CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP048417	Citrobacter freundii strain CitB plasmid pA_CitB, complete sequence	0 crisprs	DEDDh	2
NZ_CP048416	Citrobacter freundii strain CitB chromosome, complete genome	1 crisprs	PD-DExK,RT,csa3,cas3,DEDDh,DinG,WYL	7
NZ_CP048418	Citrobacter freundii strain CitB plasmid pB_CitB, complete sequence	0 crisprs	NA	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 87601

106

Salmonella_phage(90.53%)

terminase,tail,integrase

attL 55:71|attR 47421:47437

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001293470.1\|0_1056_+	replication protein RepA	J9Q7H0	Salmonella_phage	1.5e-185	98.0
55:71	attL	NA	NA	NA	NA
WP_004110030.1\|1624_1837_-	hypothetical protein	J9Q7S8	Salmonella_phage	8.1e-35	100.0
WP_016051670.1\|1836_2172_-	hypothetical protein	J9Q7Z5	Salmonella_phage	9.1e-57	100.0
WP_004110036.1\|2168_2348_-	hypothetical protein	J9Q6J1	Salmonella_phage	7.3e-21	98.3
WP_032666376.1\|2388_2664_-	hypothetical protein	J9Q738	Salmonella_phage	1.2e-46	96.7
WP_023180918.1\|2732_3143_-	hypothetical protein	J9Q7G9	Salmonella_phage	1.3e-76	99.3
WP_131352253.1\|3126_3498_-	DUF2591 domain-containing protein	J9Q7S7	Salmonella_phage	2.6e-68	97.6
WP_171279041.1\|4666_5002_-	hypothetical protein	J9Q7G8	Salmonella_phage	8.6e-39	100.0
WP_171279042.1\|5001_5946_-	exonuclease	J9Q7S6	Salmonella_phage	8.8e-182	99.4
WP_171279043.1\|6006_7035_-	regulator	J9Q7Z3	Salmonella_phage	1.6e-165	98.2
WP_171279044.1\|7154_7586_-	hypothetical protein	J9Q6I8	Salmonella_phage	1.2e-72	99.3
WP_171279075.1\|7758_8553_+	DUF4365 domain-containing protein	NA	NA	NA	NA
WP_171279045.1\|8640_9084_-	hypothetical protein	J9Q7S4	Salmonella_phage	4.3e-70	98.6
WP_171279046.1\|9080_12599_-	DNA polymerase III subunit alpha	J9Q7Z2	Salmonella_phage	0.0e+00	99.1
WP_022649894.1\|12779_14015_-	AAA family ATPase	J9Q733	Salmonella_phage	6.0e-239	99.8
WP_171279047.1\|14111_16484_-	porphyrin biosynthesis protein	J9Q7G6	Salmonella_phage	0.0e+00	93.3
WP_004110118.1\|16593_16806_-	hypothetical protein	NA	NA	NA	NA
WP_000224608.1\|17070_17457_+	transcriptional regulator	NA	NA	NA	NA
WP_131352232.1\|17448_18555_-\|integrase	site-specific integrase	A0A1P8DTG6	Proteus_phage	4.3e-26	32.6
WP_131352229.1\|18727_19144_-	type II toxin-antitoxin system YafO family toxin	NA	NA	NA	NA
WP_006812569.1\|19134_19659_-	hypothetical protein	NA	NA	NA	NA
WP_131381271.1\|19755_20001_-	GrxA family glutaredoxin	A0A2I7SAE2	Vibrio_phage	1.0e-12	44.9
WP_131381270.1\|20000_20366_-	hypothetical protein	K7PH35	Enterobacteria_phage	2.3e-37	67.2
WP_131381267.1\|20381_20585_-	hypothetical protein	A0A0B6VT64	Edwardsiella_phage	3.4e-06	49.2
WP_045339937.1\|20595_21369_-	phosphate starvation-inducible protein PhoH	W8D063	Erwinia_phage	3.8e-90	65.5
WP_131381275.1\|21491_22043_-	hypothetical protein	NA	NA	NA	NA
WP_131381265.1\|22317_22872_-	hypothetical protein	NA	NA	NA	NA
WP_131381262.1\|22950_23679_-	hypothetical protein	NA	NA	NA	NA
WP_023180935.1\|25249_25555_-	hypothetical protein	J9Q7S1	Salmonella_phage	5.4e-48	98.0
WP_165500192.1\|25703_25916_-	hypothetical protein	J9Q6I3	Salmonella_phage	4.9e-32	98.6
WP_131381258.1\|26075_27398_-	DNA ligase	J9Q7G5	Salmonella_phage	8.1e-258	99.1
WP_022649966.1\|27432_27909_-	hypothetical protein	J9Q7R9	Salmonella_phage	2.2e-80	98.7
WP_171279048.1\|27989_28784_-	hypothetical protein	J9Q7Z0	Salmonella_phage	2.4e-140	96.2
WP_000209842.1\|28966_30019_+	hypothetical protein	J9Q6F5	Salmonella_phage	1.9e-92	56.7
WP_171279076.1\|30020_31136_-	DNA primase	J9Q720	Salmonella_phage	5.1e-213	96.5
WP_131352205.1\|31292_32633_-	AAA family ATPase	J9Q7G4	Salmonella_phage	1.1e-246	99.6
WP_171279049.1\|32693_33419_-	hypothetical protein	J9Q7R8	Salmonella_phage	1.6e-138	98.3
WP_171279050.1\|33611_34370_-	DUF2971 domain-containing protein	J9Q7Y9	Salmonella_phage	1.1e-145	97.2
WP_060458854.1\|34479_34890_-	hypothetical protein	J9Q6F2	Salmonella_phage	2.0e-66	95.6
WP_060458853.1\|34879_35524_-	hypothetical protein	J9Q719	Salmonella_phage	1.6e-89	95.8
WP_171279077.1\|35525_35879_-	hypothetical protein	J9Q7G3	Salmonella_phage	4.9e-45	99.0
WP_000161333.1\|35884_36550_-	AAA family ATPase	J9Q7R7	Salmonella_phage	8.0e-113	95.0
WP_016582626.1\|36970_37240_+	DUF1778 domain-containing protein	NA	NA	NA	NA
WP_171279078.1\|37264_37768_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_171279051.1\|37796_38003_-	hypothetical protein	J9Q7G2	Salmonella_phage	3.1e-23	78.5
WP_000147960.1\|37953_38205_-	hypothetical protein	J9Q7R6	Salmonella_phage	1.9e-30	89.2
WP_171279052.1\|38206_38899_-	hypothetical protein	J9Q7Y7	Salmonella_phage	5.0e-126	95.7
WP_000064173.1\|38912_39236_-	hypothetical protein	J9Q6E7	Salmonella_phage	1.4e-46	92.5
WP_171279053.1\|39422_40007_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	2.4e-73	68.0
WP_171279079.1\|42593_43172_-	DUF4376 domain-containing protein	Q9LA61	Enterobacterial_phage	1.6e-24	36.1
WP_171279054.1\|43228_47860_-	DUF1983 domain-containing protein	J9Q713	Salmonella_phage	0.0e+00	88.7
47421:47437	attR	NA	NA	NA	NA
WP_023316017.1\|47881_48469_-\|tail	tail assembly protein	J9Q7F8	Salmonella_phage	1.9e-102	92.3
WP_071692144.1\|48456_49254_-	C40 family peptidase	J9Q7R4	Salmonella_phage	4.1e-156	96.2
WP_016051624.1\|49246_49945_-\|tail	phage minor tail protein L	J9Q7Y5	Salmonella_phage	3.7e-137	100.0
WP_000440566.1\|50034_50370_-\|tail	phage tail protein	J9Q6E1	Salmonella_phage	5.7e-59	97.3
WP_171279055.1\|50411_54995_-	tape measure protein	J9Q712	Salmonella_phage	0.0e+00	91.3
WP_000952684.1\|55002_55227_-	hypothetical protein	J9Q7F7	Salmonella_phage	4.2e-34	100.0
WP_000163862.1\|55352_55670_-	hypothetical protein	J9Q7R3	Salmonella_phage	6.0e-50	98.1
WP_045339234.1\|55729_56476_-	Ig domain-containing protein	J9Q7Y4	Salmonella_phage	3.1e-129	98.8
WP_000469441.1\|56550_56934_-	hypothetical protein	J9Q6D8	Salmonella_phage	1.7e-67	100.0
WP_000523626.1\|56935_57409_-	hypothetical protein	J9Q711	Salmonella_phage	2.3e-82	100.0
WP_001027662.1\|57399_57744_-	hypothetical protein	J9Q7F6	Salmonella_phage	1.9e-57	100.0
WP_000057119.1\|57841_58675_-	hypothetical protein	J9Q7R2	Salmonella_phage	2.6e-153	100.0
WP_000801184.1\|58674_59109_-	hypothetical protein	J9Q7Y3	Salmonella_phage	2.1e-74	100.0
WP_001115046.1\|59152_60076_-	Ig domain-containing protein	J9Q6D6	Salmonella_phage	3.3e-157	100.0
WP_001130336.1\|60150_61026_-	hypothetical protein	J9Q710	Salmonella_phage	3.8e-163	100.0
WP_171279056.1\|61052_61949_-	hypothetical protein	J9Q7F4	Salmonella_phage	9.3e-149	99.0
WP_171279057.1\|61971_63546_-	hypothetical protein	J9Q7R1	Salmonella_phage	1.6e-300	99.0
WP_002211787.1\|63579_64836_-\|terminase	terminase	J9Q7Y2	Salmonella_phage	1.8e-251	100.0
WP_171279058.1\|64838_65480_-	DNA-binding protein	J9Q6D4	Salmonella_phage	2.8e-107	97.7
WP_000176291.1\|65675_65942_-	hypothetical protein	J9Q757	Salmonella_phage	1.3e-42	100.0
WP_002211789.1\|65951_66842_-	hypothetical protein	J9Q7I6	Salmonella_phage	6.2e-169	99.7
WP_001113021.1\|66847_67102_-	hypothetical protein	J9Q7U0	Salmonella_phage	4.1e-41	98.8
WP_016051719.1\|67094_67733_-	ATP-binding cassette domain-containing protein	J9Q807	Salmonella_phage	3.8e-112	100.0
WP_000164561.1\|67729_68398_-	ParB N-terminal domain-containing protein	J9Q6L1	Salmonella_phage	1.1e-114	99.5
WP_032634983.1\|68397_69096_-	ParB N-terminal domain-containing protein	J9Q756	Salmonella_phage	2.5e-125	99.1
WP_006812522.1\|69160_70720_+	DEAD/DEAH box helicase	J9Q7I4	Salmonella_phage	4.4e-295	99.6
WP_001291547.1\|70722_71001_+	hypothetical protein	J9Q7T9	Salmonella_phage	3.4e-41	98.9
WP_000683475.1\|71060_71483_+	hypothetical protein	J9Q806	Salmonella_phage	8.2e-63	85.7
WP_006812523.1\|71487_72015_+	transcriptional regulator	J9Q6L0	Salmonella_phage	2.6e-82	99.3
WP_000072873.1\|72337_72988_+	hypothetical protein	J9Q754	Salmonella_phage	1.4e-114	100.0
WP_016051712.1\|73038_73242_+	hypothetical protein	J9Q7I3	Salmonella_phage	1.3e-29	100.0
WP_105625582.1\|73892_74375_-	hypothetical protein	J9Q805	Salmonella_phage	1.2e-86	96.9
WP_171279059.1\|74580_74862_-	ABC transporter	J9Q753	Salmonella_phage	5.0e-48	97.8
WP_071692159.1\|75061_75373_-	hypothetical protein	J9Q7T7	Salmonella_phage	2.1e-47	96.1
WP_160859106.1\|75513_75729_-	hypothetical protein	J9Q804	Salmonella_phage	4.1e-34	97.2
WP_131381296.1\|75736_75958_-	hypothetical protein	J9Q6K7	Salmonella_phage	1.2e-33	95.8
WP_059305651.1\|76103_76346_+	hypothetical protein	J9Q751	Salmonella_phage	4.0e-38	95.0
WP_080112974.1\|77757_78960_-	hypothetical protein	J9Q803	Salmonella_phage	4.0e-171	75.9
WP_080112975.1\|78999_79185_-	hypothetical protein	J9Q6K5	Salmonella_phage	3.4e-21	81.7
WP_171279080.1\|79194_79512_-	hypothetical protein	J9Q750	Salmonella_phage	1.3e-57	93.3
WP_046340552.1\|79511_79748_-	hypothetical protein	J9Q7H8	Salmonella_phage	4.6e-39	96.2
WP_047722265.1\|79833_80100_-	hypothetical protein	J9Q7T5	Salmonella_phage	4.0e-31	70.5
WP_050194520.1\|80288_80492_+	putative selenium delivery protein YdfZ	J9Q802	Salmonella_phage	1.7e-29	95.5
WP_050194521.1\|80552_80840_-	hypothetical protein	A5VWB2	Enterobacteria_phage	1.3e-27	58.8
WP_171279060.1\|80836_81145_-	hypothetical protein	A0A1B5FPC7	Escherichia_phage	2.3e-14	56.9
WP_171279061.1\|81156_81660_-	hypothetical protein	J9Q748	Salmonella_phage	1.7e-83	85.7
WP_171279062.1\|81656_82298_-	HD domain-containing protein	J9Q7H7	Salmonella_phage	1.6e-113	98.6
WP_042863528.1\|82389_82761_-	hypothetical protein	J9Q7T4	Salmonella_phage	7.2e-63	99.2
WP_171279063.1\|82763_83045_-	hypothetical protein	J9Q801	Salmonella_phage	9.3e-47	97.8
WP_171279064.1\|83041_83731_-	hypothetical protein	J9Q6K2	Salmonella_phage	2.8e-121	96.1
WP_171279065.1\|83789_85475_-	DUF4942 domain-containing protein	J9Q747	Salmonella_phage	0.0e+00	98.8
WP_171279066.1\|85692_86136_+	hypothetical protein	NA	NA	NA	NA
WP_171279067.1\|86230_86791_-	hypothetical protein	J9Q7H6	Salmonella_phage	3.5e-93	98.4
WP_000872126.1\|86908_87097_-	hypothetical protein	J9Q800	Salmonella_phage	1.2e-26	100.0
WP_171279068.1\|87106_87601_-	hypothetical protein	J9Q6J9	Salmonella_phage	1.6e-78	95.7

DBSCAN-SWA_2

92424 : 109603

Salmonella_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000262979.1\|92424_92655_-	hypothetical protein	J9Q7H5	Salmonella_phage	2.1e-36	100.0
WP_004109976.1\|92857_93451_-	phage N-6-adenine-methyltransferase	J9Q7T2	Salmonella_phage	2.1e-112	100.0
WP_168979032.1\|93636_94479_-	hypothetical protein	J9Q7Z9	Salmonella_phage	5.8e-108	92.9
WP_171279069.1\|94607_95165_-	3'-5' exonuclease	J9Q6J8	Salmonella_phage	1.2e-101	98.9
WP_000564632.1\|95174_95594_-	hypothetical protein	J9Q743	Salmonella_phage	2.9e-68	98.6
WP_000386471.1\|95657_96302_-	AAA family ATPase	J9Q7H4	Salmonella_phage	5.2e-117	100.0
WP_171279070.1\|96301_96778_-	dihydrofolate reductase	J9Q7T1	Salmonella_phage	8.9e-90	99.4
WP_160859100.1\|96774_97170_-	hypothetical protein	J9Q7Z8	Salmonella_phage	3.9e-67	96.9
WP_072105598.1\|97189_98293_-	thymidylate synthase	J9Q6J6	Salmonella_phage	5.2e-218	98.9
WP_131352132.1\|98482_99352_-	phosphoribosyl-ATP pyrophosphohydrolase	J9Q742	Salmonella_phage	7.9e-161	98.6
WP_023180908.1\|99434_100577_-	ribonucleotide-diphosphate reductase subunit beta	J9Q7H3	Salmonella_phage	2.2e-219	99.7
WP_171279071.1\|100684_103000_-	ribonucleoside-diphosphate reductase subunit alpha	J9Q7T0	Salmonella_phage	0.0e+00	99.5
WP_002214145.1\|103077_103647_-	hypothetical protein	J9Q7Z7	Salmonella_phage	5.8e-104	100.0
WP_171279072.1\|103657_104404_-	hypothetical protein	J9Q6J5	Salmonella_phage	9.9e-136	98.0
WP_171279073.1\|104393_106310_-	AAA family ATPase	J9Q741	Salmonella_phage	0.0e+00	99.1
WP_000174806.1\|106539_107625_-	exonuclease SbcCD subunit D	J9Q7S9	Salmonella_phage	2.7e-206	98.9
WP_000832167.1\|107853_108357_+	hypothetical protein	J9Q7Z6	Salmonella_phage	5.5e-90	98.2
WP_171279074.1\|108388_108883_-	GNAT family N-acetyltransferase	J9Q6J3	Salmonella_phage	3.3e-87	97.0
WP_022649908.1\|108958_109603_-	hypothetical protein	J9Q739	Salmonella_phage	2.2e-123	99.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP048416

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP048416_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP048416_1

4425843-4425956

Orphan

Consensus_repeat	Method
GTAGGCCTGATAAGCGTAGCGCCATCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP048416_1

>merge|NZ_CP048416|1|4425843-4425956|CRISPRCasFinder
GTAGGCCTGATAAGCGTAGCGCCATCAGGCAGATCTTTCGCCGGATGCGGCGCAAACACCTTATCCGGCCTACAACGTGCTACCCCGTAGGCCTGATAAGCGCAGCGCCATCAG

>NZ_CP048416|1|1|4425843-4425956|CRISPRCasFinder
GTAGGCCTGATAAGCGTAGCGCCATCAG	GCAGATCTTTCGCCGGATGCGGCGCAAACACCTTATCCGGCCTACAACGTGCTACCCC
GTAGGCCTGATAAGCGCAGCGCCATCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP048416.1\|WP_003844732.1\|4424288_4425179_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176129
NZ_CP048416.1\|WP_003826645.1\|4418893_4420852_+\|acetate--CoA-ligase	unknown	unknown	gnl\|CDD\|234677
NZ_CP048416.1\|WP_003031731.1\|4430389_4430713_+\|superoxide-response-transcriptional-regulator-SoxS	unknown	unknown	gnl\|CDD\|182314
NZ_CP048416.1\|WP_129622416.1\|4423094_4423784_-\|LrgB-family-protein	unknown	unknown	gnl\|CDD\|224265
NZ_CP048416.1\|WP_048216949.1\|4427770_4429120_-\|guanine/hypoxanthine-transporter-GhxP	unknown	unknown	gnl\|CDD\|225161
NZ_CP048416.1\|WP_048216947.1\|4415744_4416416_-\|cytochrome-c-nitrite-reductase-Fe-S-protein	unknown	unknown	gnl\|CDD\|274451
NZ_CP048416.1\|WP_003031750.1\|4421088_4421403_+\|DUF485-domain-containing-protein	unknown	unknown	gnl\|CDD\|225704
NZ_CP048416.1\|WP_129622412.1\|4433220_4435530_-\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	unknown	unknown	gnl\|CDD\|273608
NZ_CP048416.1\|WP_003031747.1\|4421399_4423049_+\|cation/acetate-symporter-ActP	unknown	unknown	gnl\|CDD\|236495
NZ_CP048416.1\|WP_003031720.1\|4436788_4439611_+\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NZ_CP048416.1\|WP_048216948.1\|4425249_4425741_-\|transposase	unknown	unknown	gnl\|CDD\|224854
NZ_CP048416.1\|WP_003031737.1\|4425966_4427613_-\|Na+/H+-antiporter	unknown	unknown	gnl\|CDD\|129911
NZ_CP048416.1\|WP_003031719.1\|4439726_4440083_-\|MmcQ/YjbR-family-DNA-binding-protein	unknown	unknown	gnl\|CDD\|225197
NZ_CP048416.1\|WP_003031727.1\|4432855_4433137_+\|YjcB-family-protein	unknown	unknown	gnl\|CDD\|374240
NZ_CP048416.1\|WP_003031758.1\|4416412_4416979_-\|cytochrome-c-nitrite-reductase-pentaheme-subunit	unknown	unknown	gnl\|CDD\|183264
NZ_CP048416.1\|WP_003841054.1\|4430715_4432302_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|227279
NZ_CP048416.1\|WP_003031742.1\|4423776_4424187_-\|CidA/LrgA-family-protein	unknown	unknown	gnl\|CDD\|224298
NZ_CP048416.1\|WP_046671365.1\|4436012_4436537_-\|single-stranded-DNA-binding-protein-SSB1	unknown	unknown	gnl\|CDD\|236362
NZ_CP048416.1\|WP_003841065.1\|4417023_4418460_-\|ammonia-forming-nitrite-reductase-cytochrome-c552-subunit	unknown	unknown	gnl\|CDD\|236854
NZ_CP048416.1\|WP_003031733.1\|4429844_4430303_-\|redox-sensitive-transcriptional-activator-SoxR	unknown	unknown	gnl\|CDD\|184964

Protein	Function_ID	Function_description	E-value
NZ_CP048416.1\|WP_003844732.1\|4424288_4425179_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176129	cd08438, PBP2_CidR, The C-terminal substrate binding domain of LysR-like transcriptional regulator CidR, contains the type 2 periplasmic binding fold. This CD includes the substrate binding domain of CidR which positively up-regulates the expression of cidABC operon in the presence of acetic acid produced by the metabolism of excess glucose. The CidR affects the control of murein hydrolase activity by enhancing cidABC expression in the presence of acetic acid. Thus, up-regulation of cidABC expression results in increased murein hydrolase activity. This substrate binding domain has significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	3.97704e-89
NZ_CP048416.1\|WP_003826645.1\|4418893_4420852_+\|acetate--CoA-ligase	gnl\|CDD\|234677	PRK00174, PRK00174, acetyl-CoA synthetase; Provisional.	0
NZ_CP048416.1\|WP_003031731.1\|4430389_4430713_+\|superoxide-response-transcriptional-regulator-SoxS	gnl\|CDD\|182314	PRK10219, PRK10219, superoxide response transcriptional regulator SoxS.	9.05826e-64
NZ_CP048416.1\|WP_129622416.1\|4423094_4423784_-\|LrgB-family-protein	gnl\|CDD\|224265	COG1346, LrgB, Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane].	1.56351e-87
NZ_CP048416.1\|WP_048216949.1\|4427770_4429120_-\|guanine/hypoxanthine-transporter-GhxP	gnl\|CDD\|225161	COG2252, COG2252, Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism].	4.06629e-144
NZ_CP048416.1\|WP_048216947.1\|4415744_4416416_-\|cytochrome-c-nitrite-reductase-Fe-S-protein	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	3.10014e-143
NZ_CP048416.1\|WP_003031750.1\|4421088_4421403_+\|DUF485-domain-containing-protein	gnl\|CDD\|225704	COG3162, COG3162, Predicted membrane protein [Function unknown].	2.6138e-50
NZ_CP048416.1\|WP_129622412.1\|4433220_4435530_-\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	gnl\|CDD\|273608	TIGR01414, Contains:_AIDA-I_translocator, outer membrane autotransporter barrel domain. A number of Gram-negative bacterial proteins, mostly found in pathogens and associated with virulence, contain a conserved C-terminal domain that integrates into the outer membrane and enables the N-terminal region to be delivered across the membrane. This C-terminal autotransporter domain is about 400 amino acids in length and includes the aromatic amino acid-rich OMP signal, typically ending with a Phe or Trp residue, at the extreme C-terminus. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	2.36196e-43
NZ_CP048416.1\|WP_003031747.1\|4421399_4423049_+\|cation/acetate-symporter-ActP	gnl\|CDD\|236495	PRK09395, actP, cation/acetate symporter ActP.	0
NZ_CP048416.1\|WP_003031720.1\|4436788_4439611_+\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NZ_CP048416.1\|WP_048216948.1\|4425249_4425741_-\|transposase	gnl\|CDD\|224854	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	7.10764e-37
NZ_CP048416.1\|WP_003031737.1\|4425966_4427613_-\|Na+/H+-antiporter	gnl\|CDD\|129911	TIGR00831, Putative_Na+/H+_exchanger_Rv2287/MT2345/Mb2309., Na+/H+ antiporter, bacterial form. The Monovalent Cation:Proton Antiporter-1 (CPA1) Family (TC 2.A.36) The CPA1 family is a large family of proteins derived from Gram-positive and Gram-negative bacteria, blue green bacteria, yeast, plants and animals. Transporters from eukaryotes have been functionally characterized, and all of these catalyze Na+:H+ exchange. Their primary physiological functions may be in (1) cytoplasmic pH regulation, extruding the H+ generated during metabolism, and (2) salt tolerance (in plants), due to Na+ uptake into vacuoles. This model is specific for the bacterial members of this family. [Transport and binding proteins, Cations and iron carrying compounds].	0
NZ_CP048416.1\|WP_003031719.1\|4439726_4440083_-\|MmcQ/YjbR-family-DNA-binding-protein	gnl\|CDD\|225197	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown].	5.53082e-49
NZ_CP048416.1\|WP_003031727.1\|4432855_4433137_+\|YjcB-family-protein	gnl\|CDD\|374240	pfam15940, YjcB, Family of unknown function. This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length.	2.63994e-40
NZ_CP048416.1\|WP_003031758.1\|4416412_4416979_-\|cytochrome-c-nitrite-reductase-pentaheme-subunit	gnl\|CDD\|183264	PRK11659, PRK11659, cytochrome c nitrite reductase pentaheme subunit; Provisional.	5.17591e-111
NZ_CP048416.1\|WP_003841054.1\|4430715_4432302_-\|EAL-domain-containing-protein	gnl\|CDD\|227279	COG4943, COG4943, Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms].	0
NZ_CP048416.1\|WP_003031742.1\|4423776_4424187_-\|CidA/LrgA-family-protein	gnl\|CDD\|224298	COG1380, COG1380, Putative effector of murein hydrolase LrgA [General function prediction only].	6.27345e-34
NZ_CP048416.1\|WP_046671365.1\|4436012_4436537_-\|single-stranded-DNA-binding-protein-SSB1	gnl\|CDD\|236362	PRK09010, PRK09010, single-stranded DNA-binding protein; Provisional.	1.35146e-114
NZ_CP048416.1\|WP_003841065.1\|4417023_4418460_-\|ammonia-forming-nitrite-reductase-cytochrome-c552-subunit	gnl\|CDD\|236854	PRK11125, nrfA, ammonia-forming cytochrome c nitrite reductase.	0
NZ_CP048416.1\|WP_003031733.1\|4429844_4430303_-\|redox-sensitive-transcriptional-activator-SoxR	gnl\|CDD\|184964	PRK15002, PRK15002, redox-sensitive transcriptional activator SoxR.	6.63854e-107

>NZ_CP048416.1|WP_048216948.1|4425249_4425741_-|transposase
MSNYRRNYINGGTWFFTVNLQDRRSQLLISKIDRLRCAISAVQKMKPFYINAWVVLPEHMHCIWTLPDNDADFSSRWREIKKHFTRSLSARHIWQPRFWEHTIRDEHDYRQHVDYIYINPVKHGWVKQVQTWPFSTFHRDVRRGLFPQNWAGEIMDFNMGERA
>NZ_CP048416.1|WP_003844732.1|4424288_4425179_+|LysR-family-transcriptional-regulator
MDIRTLRYFVEVVRQQSFTRAAEKLFVTQPTISKMLKNLEDELNCTLLIRDGRRLLLTDTGQVVFERGLAILAEFRQLEAELSDINHLNRGVLRLGIPPMVGMLMAGPISLFRQRYPGVELKVSEFGGLTVQQAVMNGDLDVAMTALPVEEESGLATLPLFSHPLCVLVPRSGQWTTCESISPEALAEHPLLIYNEDFALSRQLLELFSQHNVKPRIAVRSGQWDFLAAMVQAGVGIAILPEPICQRLDKQTLRWIPLESDLRWQLGMIWREGVYLSHSAQAWLKCCEGFWLPQAS
>NZ_CP048416.1|WP_003031742.1|4423776_4424187_-|CidA/LrgA-family-protein
MAVAISRVTPAVIHRLQIPVQVLLYAGLFVFAQYLVSWLHLPLPANLVGMVLMLALIVCRVIPLNWIRAGARWLLAEMLLFFVPAVVAVVNYTQLLLVDGWRIFAVIAISTLMVLGATAWVVDKVYRYEMSRLNRE
>NZ_CP048416.1|WP_129622416.1|4423094_4423784_-|LrgB-family-protein
MSNFQLSVLCLVITLGIYFANKRLYRRFRKLPLMPLVLTPALLVLMLVFGHISWQNYIGESHWLLWLLGPATIAFAVPVYDNLAVIKRRWMSLTAGVVTATLVAVTSSVWLARLFMLPDEIQRSLAVRSVTTPFALAAAEPLGGQPDLVALFVVVTGVFGMAVGDVLFLRLSIREGMAKGAGFGAASHGAGTARSYELGQQEGVVASLVMMLSGVVMVLVAPLVARLMF
>NZ_CP048416.1|WP_003031747.1|4421399_4423049_+|cation/acetate-symporter-ActP
MKRVLTALAATLPFAANAADAISGAVQRQPTNWQAIVMFLIFVIFTLGITYWASKRVRSRNDYYTAGGNITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIYSLGFLVGWPIILFLIAERLRNLGRYTFADVASYRLKQGPIRILSACGSLVVVALYLIAQMVGAGKLIELLFGLNYHIAVVLVGVLMMMYVLFGGMLATTWVQIIKAVLLLFGASFMAFMVMKHVGFSFNNLFTEAMAVHPKGSAIMSPGGLVKDPISALSLGLGLMFGTAGLPHILMRFFTVSDAREARKSVFYATGFMGYFYILTFIIGFGAIMLVGANPEYKDAAGALIGGNNMAAVHLANAVGGNLFLGFISAVAFATILAVVAGLTLAGASAVSHDLYANVFRKGATEREELKVSKITVLVLGVIAILLGVLFENQNIAFMVGLAFAIAASCNFPIILLSMYWSRLTTRGAMLGGWLGLLTAVVLMILGPTIWVQILGHEKAIFPYEYPALFSISIAFLGIWFFSATDNSEEGNREREQFRAQFIRSQTGYGVEQGRAH
>NZ_CP048416.1|WP_003031750.1|4421088_4421403_+|DUF485-domain-containing-protein
MNDQIYQRIEDSARFRELVEKRQRFATILSIIMLAVYISFILLIAFAPGWLGTPLHAGTSVTRGIPIGVGVILISFILTGIYIWRANGEFDRLNNAVLHEVKAS
>NZ_CP048416.1|WP_003826645.1|4418893_4420852_+|acetate--CoA-ligase
MSQIHKHAIPANIADRCLINPEQYAEKYQQSVNEPDTFWGEQGKILDWIKPYSQVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHLQANGDRTAIIWEGDDATQSKNITYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSVIFGGFSPEAVAGRIIDSNSRLVITADEGVRAGRAIPLKKNVDDALKNPNVKTVEHVVVLKRTGGKTEWQEGRDLWWSDLIEKASSEHQPEEMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHQGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMSQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINPEAWEWYWKKIGNEKCPVVDTWWQTETGGFMITPLPGATELKAGSATRPFFGVQPAIVDNEGNPLEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVSHPKIAEAAVVGIPHNIKGQAIYAYVTLNHGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGDTSNLGDTSTLADPGVVEKLLEEKQAIAMPS
>NZ_CP048416.1|WP_003841065.1|4417023_4418460_-|ammonia-forming-nitrite-reductase-cytochrome-c552-subunit
MARIKSRVRRFFSLLVPLLFITAVHAEQTPVPAKTVTVEAKNEVFAPQHPDQYLSWKATSEQSAREDALAEDPRLVILWAGYPFSRDYNKPRGHAYAVTDVRETLRTGAPKTAEDGPLPMACWSCKSPDVARLIQKDGEDGYFHGKWARGGPEIVNNLGCGDCHNTASPDFAKGKPELTLSRPYAERAMETIGKPFEKAGRFDQQSMVCGQCHVEYYFDGKNKAVKFPWDDGMKVENMEKYYDTIAFSDWTNSLSKTPMLKAQHPEYETWSAGIHGKNNVTCIDCHMPKVQNAEGKIYTDHKIGNPFDNFAQTCANCHTQDKASLQKVVAERKQAIHDLKIKVEDQLVRAHFEAKAAWDAGATEAEMKPILEDIRHAQWRWDLSIASHGIHMHAPEEGLRMLGSAMDKAADARTKLVRLLATKGITHEIPLPDISTKEKAQAAIGLNMQQINAEKQDFIKTVIPQWEDQARKNGLLSQ
>NZ_CP048416.1|WP_003031758.1|4416412_4416979_-|cytochrome-c-nitrite-reductase-pentaheme-subunit
MSVLRSLLTAGVLASGLLWSLSGITATPTPQESDQRWTVTQQRNPDAACLDCHKPDTEGMHGKHAEAINPNNKLPVTCTNCHGQPSPNHREGVKDVMRFNEPMYNVEQQNSVCMSCHLPEQLQKAFWPHDVHVTKVACASCHSLHPKQDTMQTLSDKGRIKICVDCHSDQRNNPNFNPASVPLLKEHP
>NZ_CP048416.1|WP_048216947.1|4415744_4416416_-|cytochrome-c-nitrite-reductase-Fe-S-protein
MSCSRRQFITGVGALVAVSGTAGLVVAKTLNINGVRYGMVHDESLCIGCTACMDACREVNNVPEGVSRLTIIRSEPQGTFPDVKYRFFRHSCQHCDHAPCVDVCPTGASYRDAASGIVDVNPDLCVGCQYCIAACPYRVRFIHPVSKTADKCDFCRKTNLKAGKQPACVESCPTKALTFGNLDDPNSDISRLLQQKTTYRYKLALGTKPKVYRVPFKFGEVSQ
>NZ_CP048416.1|WP_003031737.1|4425966_4427613_-|Na+/H+-antiporter
MEIFFTILIMTLVVSLSGVFTRVLPFQLPLPLMQIAIGALLAWPTFGLHVEFDPELFLVLFIPPLLFADGWKTPTREFLEHGREIFGLALALVLVTVVGIGFMIYWLVPGIPLIPAFALAAVLSPTDAVALSGIVGEGRIPKKIMGILQGEALMNDASGLVSLKFAVAVAMGTMVFTVGGATLEFFKVAIGGILAGFVVSWLYGRSLRFLSRWGGDEPATQIVLLFLLPFASYLIAEHIGVSGILAAVAAGMTITRSGVMRRAPLAMRLRANSTWAMLEFVFNGMVFLLLGLQLPGILESSLAAAEVDPNVEIWMLFTDIVLIYVALMLVRFGWLWTMKKFSLRFLKKKPMEFGSWTTREILIASFAGVRGAITLAGVLSIPLLLPDGSGFPARYELIFLAAGVILFSLFVGVVMLPILLQHLEVADHSQQQKEERIARAATAEVAIVAIQKMEERLAADTEENIDNQLLTEVSSRVIGNLRRRADGRNDVESSMQEENLERRFRLAALRSERAELYHLRATREISNETLQKLLHDLDLLEALLIENQ
>NZ_CP048416.1|WP_048216949.1|4427770_4429120_-|guanine/hypoxanthine-transporter-GhxP
MSTPSARTGGSLDAWFKISLRGSTVRQEVVAGLTTFLAMVYSVIVVPGMLGKAGFPPAAVFVATCLVAGIGSIVMGLWANLPLAIGCAISLTAFTAFSLVLGQHISVPVALGAVFLMGVLFTIISATGIRSWILRNLPQGVAHGTGIGIGLFLLLIAANGVGLVIKNPLDGLPVALGDFDTFPVIMSLVGLAVIIGLEKLKVPGGILLTIIGISIVGLISDPAVHFSGIFAMPSLSDENGNSLIGSLDIMGALNPIVLPSVLALVMTAVFDATGTIRAVAGQANLLDKDGQIIDGGKALTTDSLSSVFSGLVGAAPAAVYIESAAGTAAGGKTGLTAITVGVLFLLILFLSPLSYLVPVYATAPALMYVGLLMLSNVAKIDFADFVDAMAGLVTAVFIVLTCNIVTGIMIGFATLVIGRLVSGEWRKLNIGTVVIAIALVAFYAGGWAI
>NZ_CP048416.1|WP_003031733.1|4429844_4430303_-|redox-sensitive-transcriptional-activator-SoxR
MEKKLPRIKALLTPGEVAKRSGVAVSTLHFYESKGLISSMRNSGNQRRYKRDVLRYVAIIKIAQRIGIPLATIGDALGVLPEGHSLSAKEWKQLSSQWREELDRRIHTLVSLRDELDGCIGCGCLSRSDCPLRNPGDQLGEQGTGARLLEDD
>NZ_CP048416.1|WP_003031731.1|4430389_4430713_+|superoxide-response-transcriptional-regulator-SoxS
MSHQQIIQTLIEWIDEHIDQPLNIEAVAKKSGYSKWYLQRMFRTVTRQTLGDYIRQRRLLLAAVELRTTERPIFDIAMDLGYVSQQTFSRVFRREFDRTPSDYRHRL
>NZ_CP048416.1|WP_003841054.1|4430715_4432302_-|EAL-domain-containing-protein
MNHSARRKLLKLLGTFMVVLLPVVLALWFAQIRAMSETRNQLRSFAQLVLNKTELVILQADLARDMAQLYQGKMCTPAHQKSMLNIIRGRLYISELIYAQGDHFLCSTSMVPPVTYIMPTADYKRTPDIAIYYYRDTPFFAGYRMTYMQRGNYVAVINPLSYSEVMSDDPDLSWGVYDTVTDTFFSASEAANIAQFAPLVRGEASTFQQDDRFYTIVHSEKRPIAIIVSTSDNRVSQIFYHEAALTIPFGIICSILILLMWWRTRQEYLSPRRLLKRAIKKRQLCLHYQPIIDIKNGQCVGAEALLRWPGCKGEVMSPTEFIPLAEKEGMIERITDYVVEEVFNDLGYFLSAHPQLYISINLSASDFHSSRLIALINDKNREYSVAAQQIKVEVTERGFIDVHKMTPVIQAFRKAGYEVAFDDFGTGYSNLHNLSALNVDILKIDKSFISTLSTNSTSHLIAEHIIEMAQSLHLKTIAEGVETKEQIEWLLERGVQYCQGWYFAKALPSQEFMHWIQRSPAILTQSGQ
>NZ_CP048416.1|WP_003031727.1|4432855_4433137_+|YjcB-family-protein
MATITTGVVLLRWQLLSAVLMFLASTLNIRFRKSDYIGLAVISSGLGLVFACWFATGLLGITLVDMSTIWKNIETVMVDVMSHTPPDWPMVLN
>NZ_CP048416.1|WP_129622412.1|4433220_4435530_-|autotransporter-outer-membrane-beta-barrel-domain-containing-protein
MYHRKINPKAIIPFALSFTAAQLVCAGFASAKNYELNYIDVNGGQEGIIIQDTIADDKSYDITVNIDNPVRGEGNGLEVKIGSITKAQAGDYQIGNYNVNISGTTQQEHRAGLAFFGLSAEGQDTNVTVDNFSLKNTFLIGSKYTHNNTALYTGSGADITVNGNVYIRSEVEHSNEGKDATLANNGVYARGAGSTITANGGDVYINTYASNFKELLENNSGYPDGSSKSDAVSAKDGGVVNINQSGEHKVNLLGNIDFGDKIYANTSQMNITLNGAESFWHGHEANFLETASGKWAGDLNLTLMNNAYWIPDGKDAQVSAITLQDGGTINLHGFNLHTNQSINETVKIHDLKGNNGIFLIDVNTNKTDEQRRNGSDFIEVVKSSTGGTHAIEALNINKLSNLQEDIWVADAASNVTFAAYDKIDITNEYVYDYKPLLRSDIREGDPVSQYGTNWYITGVSTKASAGSNTAIANTGLNYAAATARLEIDSLNKRLGELRQNQQQNGLWIRYKGGEMESDNGSYFKNLYSFWQLGYDNKEEGEQSVWTRGIAAHYMRGNADFTYGTGDNKSYGGSLYAAWNRPEKQDYLDLVLKYSRHESDFNYRNVYGNMGVADSSTWSISASAEYGREFSLGESSFIEPQAQLVYTRLDEARYTTSSGLRVRQNDIDSVIGRVGLRGGYRFEERPDSDIYVKLDLLHEFAGDRDVTVWGKDASMTVREGGSDSWINYGIGTNIHLTQNNNSRLYVDLERSAGGDIDMNWQVNAGFRMEW
>NZ_CP048416.1|WP_046671365.1|4436012_4436537_-|single-stranded-DNA-binding-protein-SSB1
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYIEGQLRTRKWTDQSGVEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQQQGGWGQPQQPQGGNQFSGGGQSRPQQSAPAAPSNEPPMDFDDDIPF
>NZ_CP048416.1|WP_003031720.1|4436788_4439611_+|excinuclease-ABC-subunit-UvrA
MDKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCPDHDVPLAAQTVSQMVDNVLSQPEGKRLMLLAPVIKERKGEHTKTLENLAGQGYIRARIDGEVCDLSDPPKLELQKKHTIEVVIDRFKVRDDLTQRLAESFETALELSGGTAVVADMDDPKAEELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQNPELSLAGGAIRGWDRRNFYYFQMLKSLAEHYKFDVEAPWASLSPTVHKVVLYGSGKENIEFKYMNDRGDTSVRRHPFEGVLHNMERRYKETESSAVREELAKFISNRPCASCEGTRLRREARHVFVENTPLPAISDMSIGHAMDFFNNLKLAGQRAKIAEKILKEIGDRLKFLVNVGLNYLTLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLGTLIHLRNLGNTVIVVEHDEDAIRAADHVIDIGPGAGVHGGQVVAEGTLDDIMAVPESLTGQYMSGKRKIEVPKQRVAADPEKVLKLTGARGNNLKDVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQTALNGATLAEPAPYRDVQGLEHFDKVIDIDQSPIGRTPRSNPATYTGVFTPVRELFAGVPESRARGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIKYKGKTIHEVLDMTIEEAREFFDAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKLARELSKRGTGQTLYILDEPTTGLHFADIQQLLDVLHQLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEILVSGTPETVAECEASHTARFLKPLL
>NZ_CP048416.1|WP_003031719.1|4439726_4440083_-|MmcQ/YjbR-family-DNA-binding-protein
MTNSELLQYCMAKMGAEQSVHSDWKATQIKVEDVLFAMVKEVEERPAVSLKTSPELAELLRQQHSDVRPSRHLNKAHWSTVYLDGSLPDSQIYYLVDASYQQAVNTLPADKRRILTQP

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

789645 : 795876

Escherichia_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_035897520.1\|789645_790350_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	5.3e-139	99.6
WP_052439643.1\|790855_793297_+	molybdopterin-dependent oxidoreductase	A0A077SK27	Escherichia_phage	0.0e+00	94.7
WP_040031387.1\|793310_793937_+	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	4.9e-120	92.3
WP_040031386.1\|793929_794703_+	dimethyl sulfoxide reductase anchor subunit	A0A077SK59	Escherichia_phage	3.0e-103	78.7
WP_040031385.1\|794746_795343_+	molecular chaperone	A0A077SLS7	Escherichia_phage	6.1e-80	72.0
WP_072040969.1\|795339_795876_+	4Fe-4S binding protein	A0A077SLP0	Escherichia_phage	5.0e-65	67.2

DBSCAN-SWA_2

1728814 : 1737233

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032936681.1\|1728814_1729762_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	2.9e-07	25.6
WP_032936682.1\|1729745_1730477_+	ABC transporter permease	NA	NA	NA	NA
WP_003027354.1\|1730457_1730565_-	protein YohO	NA	NA	NA	NA
WP_003844381.1\|1730616_1731348_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	1.8e-105	93.5
WP_003027348.1\|1731573_1733259_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	6.7e-281	91.6
WP_003840155.1\|1733255_1733975_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_003027346.1\|1734021_1734492_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	4.9e-64	76.9
WP_003840158.1\|1734534_1734993_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	5.1e-50	68.0
WP_003844377.1\|1735199_1737233_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	4.0e-54	27.6

DBSCAN-SWA_3

1775496 : 1785074

Bacillus_phage(28.57%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003840216.1\|1775496_1777443_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	2.4e-40	41.8
WP_003036813.1\|1777517_1777742_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	3.6e-17	62.7
WP_003036810.1\|1778065_1778386_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	3.5e-13	45.7
WP_003036804.1\|1778416_1780693_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.4e-164	42.1
WP_003844346.1\|1780962_1782324_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	4.1e-204	92.9
WP_003841759.1\|1782483_1782816_-	YegP family protein	NA	NA	NA	NA
WP_003036797.1\|1782951_1783674_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	9.2e-30	32.7
WP_003844344.1\|1783670_1785074_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	5.0e-32	29.2

DBSCAN-SWA_4

1836262 : 1843887

Enterobacteria_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003844299.1\|1836262_1836805_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	3.3e-56	60.7
WP_003844298.1\|1836821_1837910_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	4.1e-98	52.0
WP_044701929.1\|1837909_1838809_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	3.0e-30	36.0
WP_044701931.1\|1838847_1839720_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.7e-107	65.2
WP_048217349.1\|1840052_1841459_+	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	2.3e-37	28.5
WP_044701934.1\|1841657_1842824_+	UDP-glucose 6-dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	1.5e-114	55.0
WP_048217350.1\|1842882_1843887_-	NAD-dependent epimerase	A0A0K0KW07	Prochlorococcus_phage	6.6e-18	32.2

DBSCAN-SWA_5

2695167 : 2705205

Brazilian_cedratvirus(28.57%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_048216527.1\|2695167_2695947_+	heme ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	5.1e-10	26.8
WP_048216528.1\|2695943_2697386_-	YdiU family protein	A0A075BSJ0	Microcystis_phage	7.7e-52	35.3
WP_003836643.1\|2697447_2698161_-	EAL domain-containing protein	NA	NA	NA	NA
WP_003836644.1\|2698477_2698942_-	C40 family peptidase	A0A1V0DZX6	Clostridioides_phage	3.5e-14	38.2
WP_003030567.1\|2699019_2699769_-	vitamin B12 ABC transporter ATP-binding protein BtuD	A0A2R8FG22	Brazilian_cedratvirus	9.3e-09	30.3
WP_171278984.1\|2699768_2700320_-	glutathione peroxidase	NA	NA	NA	NA
WP_003832584.1\|2700380_2701361_-	vitamin B12 ABC transporter permease BtuC	A0A2H4IY97	uncultured_Caudovirales_phage	6.7e-15	24.8
WP_003030571.1\|2701514_2701814_-	integration host factor subunit alpha	A0A0H3UZA0	Geobacillus_virus	7.2e-13	40.0
WP_003030574.1\|2701818_2704206_-\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_048216529.1\|2704221_2705205_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2K9L3A8	Tupanvirus	1.4e-33	38.5

DBSCAN-SWA_6

2798587 : 2805613

uncultured_Caudovirales_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_171278987.1\|2798587_2799082_-	outer membrane beta-barrel protein	A0A1B0VBR9	Salmonella_phage	3.4e-07	34.2
WP_075261942.1\|2799590_2799803_-	isocitrate dehydrogenase	Q77Z09	Phage_21	1.9e-20	88.9
WP_003030760.1\|2800046_2800472_-	glutaredoxin-dependent arsenate reductase	A0A2H4J8T1	uncultured_Caudovirales_phage	7.3e-51	70.7
WP_032936140.1\|2800484_2801774_-	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	4.2e-166	70.2
WP_003030762.1\|2801818_2802139_-	transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	3.2e-19	44.8
WP_003840850.1\|2803300_2803543_+	DinI family protein	Q6UAW0	Klebsiella_phage	1.5e-29	77.9
WP_003030767.1\|2803717_2804227_+	VTT domain-containing protein	NA	NA	NA	NA
WP_003841892.1\|2804362_2805613_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.9e-22	96.3

DBSCAN-SWA_7

4180406 : 4190409

Enterobacteria_phage(71.43%)

capsid,integrase

attL 4172204:4172220|attR 4193578:4193594

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4172204:4172220	attL	NA	NA	NA	NA
WP_171279015.1\|4180406_4181285_-	site-specific DNA-methyltransferase	S4VTY0	Pandoravirus	5.3e-96	60.3
WP_171279016.1\|4181379_4183713_-	toprim domain-containing protein	Q7M2A8	Enterobacteria_phage	0.0e+00	82.9
WP_171279017.1\|4183727_4184048_-	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_001216597.1\|4184044_4184272_-	hypothetical protein	NA	NA	NA	NA
WP_171279018.1\|4184268_4184820_-	ash family protein	Q7M2A7	Enterobacteria_phage	2.4e-38	76.9
WP_000556587.1\|4184816_4185083_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	2.6e-30	71.6
WP_171279019.1\|4185620_4186364_+\|capsid	capsid protein	NA	NA	NA	NA
WP_171279020.1\|4186367_4186607_+	ogr/Delta-like zinc finger family protein	Q7M294	Enterobacteria_phage	1.8e-19	60.8
WP_171279021.1\|4186622_4187189_+	Polarity suppression protein	Q7M2A1	Enterobacteria_phage	1.1e-59	64.9
WP_171279022.1\|4187588_4188515_+	hypothetical protein	NA	NA	NA	NA
WP_171279023.1\|4189131_4190409_-\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	1.3e-74	40.0
4193578:4193594	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP048417

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP048416

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection