CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP053252	Escherichia coli strain SCU-204 plasmid pSCU-204-2, complete sequence	1 crisprs	NA	1	1
NZ_CP053251	Escherichia coli strain SCU-204 chromosome, complete genome	4 crisprs	WYL,RT,DEDDh,cas14j,DinG,cas3,csa3	2	13
NZ_CP053255	Escherichia coli strain SCU-204 plasmid pSCU-204-4, complete sequence	0 crisprs	NA	0	0
NZ_CP053253	Escherichia coli strain SCU-204 plasmid pSCU-204-1, complete sequence	0 crisprs	RT	0	0
NZ_CP053254	Escherichia coli strain SCU-204 plasmid pSCU-204-3, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP053252_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053252_1

2094-2189

Orphan

Consensus_repeat	Method
TATAGATTTATATAATTATATAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP053252_1

>merge|NZ_CP053252|1|2094-2189|CRISPRCasFinder
TATATGATTATAGATTTATATAATTATATAAAACGCTTTTCATCAGCCAAAAAGTTGGTTATGCTTACCTCGTTCTATAAATATAGATTTATAGAA

>NZ_CP053252|1|1|2094-2189|CRISPRCasFinder
TATATGATTATAGATTTATATAA	TTATATAAAACGCTTTTCATCAGCCAAAAAGTTGGTTATGCTTACCTCGT
TCTATAAATATAGATTTATAGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053252.1\|WP_001673380.1\|7217_7502_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053252.1\|WP_000156167.1\|2220_2874_+\|ParA-family-protein	unknown	unknown	gnl\|CDD\|349760
NZ_CP053252.1\|WP_089591621.1\|6233_6506_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|274805
NZ_CP053252.1\|WP_000061763.1\|6569_6950_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053252.1\|WP_000730008.1\|2917_3166_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053252.1\|WP_000839976.1\|946_1603_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|197775
NZ_CP053252.1\|WP_167787531.1\|3991_4186_+\|ash-family-protein	unknown	unknown	unknown
NZ_CP053252.1\|WP_004105259.1\|4296_4488_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053252.1\|WP_171274533.1\|7535_7835_-\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|372700
NZ_CP053252.1\|WP_004105266.1\|1695_2070_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053252.1\|WP_001523091.1\|276_771_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053252.1\|WP_171274532.1\|4484_5627_+\|ORF6N-domain-containing-protein	unknown	unknown	gnl\|CDD\|378443
NZ_CP053252.1\|WP_000269912.1\|7834_8182_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|227028

Protein	Function_ID	Function_description	E-value
NZ_CP053252.1\|WP_000839976.1\|946_1603_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|197775	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins.	1.99894e-10
NZ_CP053252.1\|WP_000156167.1\|2220_2874_+\|ParA-family-protein	gnl\|CDD\|349760	cd02042, ParAB_family, partition proteins ParAB family. ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.	2.44742e-15
NZ_CP053252.1\|WP_171274533.1\|7535_7835_-\|XRE-family-transcriptional-regulator	gnl\|CDD\|372700	pfam13744, HTH_37, Helix-turn-helix domain. Members of this family contains a DNA-binding helix-turn-helix domain.	5.11313e-09
NZ_CP053252.1\|WP_089591621.1\|6233_6506_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|274805	TIGR03830, transcriptional_regulator_XRE_family, putative zinc finger/helix-turn-helix protein, YgiT family. This model describes a family of predicted regulatory proteins with a conserved zinc finger/HTH architecture. The amino-terminal region contains a novel domain, featuring two CXXC motifs and occuring in a number of small bacterial proteins as well as in the present family. The carboxyl-terminal region consists of a helix-turn-helix domain, modeled by pfam01381. The predicted function is DNA binding and transcriptional regulation.	1.06207e-06
NZ_CP053252.1\|WP_171274532.1\|4484_5627_+\|ORF6N-domain-containing-protein	gnl\|CDD\|378443	pfam10543, ORF6N, ORF6N domain. This domain was identified by Iyer and colleagues.	2.5471e-18
NZ_CP053252.1\|WP_000269912.1\|7834_8182_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|227028	COG4683, COG4683, Uncharacterized protein conserved in bacteria [Function unknown].	3.22993e-62

>NZ_CP053252.1|WP_004105266.1|1695_2070_+|hypothetical-protein
MELHTANKNETLITAGIEIQALNIAIECMLCQIIDNEKDIDWIESILHLASEQKVCLKTALQYDVPAVSKLCQPLMAYNRAIISVCLMILDETPPLSDRSEAALTLSRKQRQLANQLISTIADL
>NZ_CP053252.1|WP_000839976.1|946_1603_+|helix-turn-helix-domain-containing-protein
MKSNDENIKKEIGLRIQTLRKQSGMTAGDLQQVTGIGLSTLQNYEAGLRQPSIPAIKKIAHALKASAPYIACLTDNPFPPQNTNAPVIPGLVAIKNDIASHAGEKPVLAIEQEILRSKNINPSSLSVLQSNDELMSPTISPGSQVLINTDDTEIHEGIYALEDRNGLVVLRHCRVIPGDNAVMLSTERDAEMNTKHLNNEEFKRYKVLGRVVSVVNWL
>NZ_CP053252.1|WP_001523091.1|276_771_-|hypothetical-protein
MTFQEWVDENGGQIGVARKFGFTSSLIGAWYRFERFPRADNLTLLVAYSEGRINVQQWAADFAERQRQRSDGTSVRQNKIKGNLPVNCLSRLKAVFSELGMPAERCNLRGPRFIARWKHSHVTVSEVRDAITVLELKNKDSSDIELIHKEISNARRSALGRLEE
>NZ_CP053252.1|WP_000156167.1|2220_2874_+|ParA-family-protein
MTISVGIFNGKGGVTKSTIARALAVAYAKAGWNVCLIDMDVLNGTVTRWVQRRMANNIEPAIAAQPCGTPSQVQKIIESEVYDLVIVDGGAYASESVPKLSEFLDMVILPTRFSTDDLETTVNTAHGIVKKGVPIKKICMVFSGAAENEADYIEAQEYLANTPYFVVDKYIPHKPALSKAQDKGLSLIECSYVAPRKKADDVIQGIINQLEALTTAA
>NZ_CP053252.1|WP_000730008.1|2917_3166_+|hypothetical-protein
MAAPSKPPKKNSKGVPPSIEQPQVFDPTETPTRTKSGGAQMAFNVDPEFKREYKTFASSMDMSLKEVLTKSFELLKAQYNQK
>NZ_CP053252.1|WP_167787531.1|3991_4186_+|ash-family-protein
MWLSLLKSCRIDMNAPLVDTFRAVAKSTVGIGTPIIIMAHTALAVFLCVKHCYTQIMVGRAGES
>NZ_CP053252.1|WP_004105259.1|4296_4488_+|hypothetical-protein
MTNLPHDYYVNLVKILLKKASYADKFRLTEIIEREAMRIASNDNAVSDAKISLVTKVVMGGAK
>NZ_CP053252.1|WP_171274532.1|4484_5627_+|ORF6N-domain-containing-protein
MKTLPTVNTLQPILHNQIPVITTELLAKLYGCSVECLHRNHHRNKSRFTEGKHFIVVKGTDLQSLKISLRDFQTIANNVRKLILWTERGAARHAKMLETDQAWDVFERLEDCYFNQNAQTAATVTVSPNNAREVVDTLNAKPMFYIKVCNNEPLTTSADVAQAFSTTNNSIVMAIDALRIPRTAAARHFFKEQRPLEGSDREITIYRMTKDGFTLLMESIDGPGVKDIKLAYIEAFNAISSVLKTQYERDLAKRLYQEKTIIRAATEHNRLLTEPNYRKELIKEFDKATGKTKAALNLPAMTQENVISALLLDLLRNARALISFDENLNPQLKLLPPTGKVVDQADHNSILSVLDANLPAKTLQDLIKTCADKLAQKSRQ
>NZ_CP053252.1|WP_089591621.1|6233_6506_-|helix-turn-helix-domain-containing-protein
MTGYELKLWRRGMNWTQERAAEEFGISLATYKRYEKGEPPRVIEMAIRVLSFDDMVKDLSHLDKDAILLSLQTLVWEKVKVSSELEQGIK
>NZ_CP053252.1|WP_000061763.1|6569_6950_-|hypothetical-protein
MSMIKIRKNAFLKIQTILAGSVGVICRSSSSRIDDGYDDEYRVSSCDEALTWLKENQERAQVYLETENGNQMLRISGRYGFETTFMAYFNQAYFDKELAWYTDRMSKSEPAPITPPNNKPFLFLVK
>NZ_CP053252.1|WP_001673380.1|7217_7502_+|hypothetical-protein
MAKPKSEIDAIRALTEVTIKGFEQVAQALVDMREAQGKVARATYNGLTSSGKSRYVASLVEEVGSQAEVSRMLNITPGRVSQLMKSEKNRKNGK
>NZ_CP053252.1|WP_171274533.1|7535_7835_-|XRE-family-transcriptional-regulator
MRTLDEVIASRSPESQTRIKEMADEMILEVGLQMMREELQLSQKQVAEAMGISQPAVTKLEQRGNDLKLATLKRYVEAMGGKLSLDVELPTGKRVAFHV
>NZ_CP053252.1|WP_000269912.1|7834_8182_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MWTVLFSQRFDDWLNEQEDALQEKVLADLKKLQVYGPELPRPYADTVKGSRYKNMKELRVQFSGRPIRAFYAFDPIRRAIVLCAGDKSNDKRFYEKLVRIAEDEFAAHLNTLESK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP053252_1	1.1\|2117\|50\|NZ_CP053252\|CRISPRCasFinder	2117-2166	50	NZ_CP048340	Escherichia coli strain 142 plasmid p142_C, complete sequence	6214-6263	0	1.0
NZ_CP053252_1	1.1\|2117\|50\|NZ_CP053252\|CRISPRCasFinder	2117-2166	50	CP053252	Escherichia coli strain SCU-204 plasmid pSCU-204-5, complete sequence	22928-22977	0	1.0
NZ_CP053252_1	1.1\|2117\|50\|NZ_CP053252\|CRISPRCasFinder	2117-2166	50	NZ_LR130559	Escherichia coli strain MS14385 isolate MS14385 plasmid 5	38317-38366	0	1.0
NZ_CP053252_1	1.1\|2117\|50\|NZ_CP053252\|CRISPRCasFinder	2117-2166	50	NZ_CP042622	Escherichia coli strain NCYU-26-73 plasmid pNCYU-26-73-7, complete sequence	45874-45923	0	1.0
NZ_CP053252_1	1.1\|2117\|50\|NZ_CP053252\|CRISPRCasFinder	2117-2166	50	NZ_CP020497	Escherichia coli strain 103 plasmid unnamed2, complete sequence	41364-41413	1	0.98
NZ_CP053252_1	1.1\|2117\|50\|NZ_CP053252\|CRISPRCasFinder	2117-2166	50	NZ_LT985302	Escherichia coli strain ECOR 39 genome assembly, plasmid: RCS82_pI	15771-15820	1	0.98
NZ_CP053252_1	1.1\|2117\|50\|NZ_CP053252\|CRISPRCasFinder	2117-2166	50	AP019710	Escherichia coli O145:H28 122715 plasmid pO145_122715_2 DNA, complete genome	8553-8602	1	0.98
NZ_CP053252_1	1.1\|2117\|50\|NZ_CP053252\|CRISPRCasFinder	2117-2166	50	NZ_CP009861	Escherichia coli strain ECONIH1 plasmid pECO-b75, complete sequence	6459-6508	1	0.98
NZ_CP053252_1	1.1\|2117\|50\|NZ_CP053252\|CRISPRCasFinder	2117-2166	50	NZ_CP032259	Escherichia coli strain AR_0067 plasmid unnamed2, complete sequence	29357-29406	1	0.98
NZ_CP053252_1	1.1\|2117\|50\|NZ_CP053252\|CRISPRCasFinder	2117-2166	50	NZ_CP020518	Escherichia coli strain 222 plasmid unnamed2, complete sequence	9207-9256	1	0.98
NZ_CP053252_1	1.1\|2117\|50\|NZ_CP053252\|CRISPRCasFinder	2117-2166	50	NZ_CP024865	Escherichia coli strain AR_0015 plasmid unitig_3_pilon, complete sequence	18879-18928	1	0.98
NZ_CP053252_1	1.1\|2117\|50\|NZ_CP053252\|CRISPRCasFinder	2117-2166	50	NZ_CP023368	Escherichia coli strain 1428 plasmid p48, complete sequence	8663-8712	2	0.96
NZ_CP053252_1	1.1\|2117\|50\|NZ_CP053252\|CRISPRCasFinder	2117-2166	50	CP025877	Escherichia coli strain 503458 plasmid p503458_49, complete sequence	13912-13961	3	0.94
NZ_CP053252_1	1.1\|2117\|50\|NZ_CP053252\|CRISPRCasFinder	2117-2166	50	NZ_CP037450	Escherichia coli strain ATCC 25922 plasmid unnamed, complete sequence	11300-11349	3	0.94

1. spacer 1.1|2117|50|NZ_CP053252|CRISPRCasFinder matches to NZ_CP048340 (Escherichia coli strain 142 plasmid p142_C, complete sequence) position: , mismatch: 0, identity: 1.0

ttatataaaacgcttttcatcagccaaaaagttggttatgcttacctcgt	CRISPR spacer
ttatataaaacgcttttcatcagccaaaaagttggttatgcttacctcgt	Protospacer
**************************************************

2. spacer 1.1|2117|50|NZ_CP053252|CRISPRCasFinder matches to CP053252 (Escherichia coli strain SCU-204 plasmid pSCU-204-5, complete sequence) position: , mismatch: 0, identity: 1.0

ttatataaaacgcttttcatcagccaaaaagttggttatgcttacctcgt	CRISPR spacer
ttatataaaacgcttttcatcagccaaaaagttggttatgcttacctcgt	Protospacer
**************************************************

3. spacer 1.1|2117|50|NZ_CP053252|CRISPRCasFinder matches to NZ_LR130559 (Escherichia coli strain MS14385 isolate MS14385 plasmid 5) position: , mismatch: 0, identity: 1.0

ttatataaaacgcttttcatcagccaaaaagttggttatgcttacctcgt	CRISPR spacer
ttatataaaacgcttttcatcagccaaaaagttggttatgcttacctcgt	Protospacer
**************************************************

4. spacer 1.1|2117|50|NZ_CP053252|CRISPRCasFinder matches to NZ_CP042622 (Escherichia coli strain NCYU-26-73 plasmid pNCYU-26-73-7, complete sequence) position: , mismatch: 0, identity: 1.0

ttatataaaacgcttttcatcagccaaaaagttggttatgcttacctcgt	CRISPR spacer
ttatataaaacgcttttcatcagccaaaaagttggttatgcttacctcgt	Protospacer
**************************************************

5. spacer 1.1|2117|50|NZ_CP053252|CRISPRCasFinder matches to NZ_CP020497 (Escherichia coli strain 103 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.98

ttatataaaacgcttttcatcagccaaaaagttggttatgcttacctcgt	CRISPR spacer
ttatataaaacgcttttcatccgccaaaaagttggttatgcttacctcgt	Protospacer
********************* ****************************

6. spacer 1.1|2117|50|NZ_CP053252|CRISPRCasFinder matches to NZ_LT985302 (Escherichia coli strain ECOR 39 genome assembly, plasmid: RCS82_pI) position: , mismatch: 1, identity: 0.98

ttatataaaacgcttttcatcagccaaaaagttggttatgcttacctcgt	CRISPR spacer
ttatataaaacgcttttcatccgccaaaaagttggttatgcttacctcgt	Protospacer
********************* ****************************

7. spacer 1.1|2117|50|NZ_CP053252|CRISPRCasFinder matches to AP019710 (Escherichia coli O145:H28 122715 plasmid pO145_122715_2 DNA, complete genome) position: , mismatch: 1, identity: 0.98

ttatataaaacgcttttcatcagccaaaaagttggttatgcttacctcgt	CRISPR spacer
ttatataaaacgcttttcatccgccaaaaagttggttatgcttacctcgt	Protospacer
********************* ****************************

8. spacer 1.1|2117|50|NZ_CP053252|CRISPRCasFinder matches to NZ_CP009861 (Escherichia coli strain ECONIH1 plasmid pECO-b75, complete sequence) position: , mismatch: 1, identity: 0.98

ttatataaaacgcttttcatcagccaaaaagttggttatgcttacctcgt	CRISPR spacer
ttatataaaacgcttttcatccgccaaaaagttggttatgcttacctcgt	Protospacer
********************* ****************************

9. spacer 1.1|2117|50|NZ_CP053252|CRISPRCasFinder matches to NZ_CP032259 (Escherichia coli strain AR_0067 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.98

ttatataaaacgcttttcatcagccaaaaagttggttatgcttacctcgt	CRISPR spacer
ttatataaaacgcttttcatccgccaaaaagttggttatgcttacctcgt	Protospacer
********************* ****************************

10. spacer 1.1|2117|50|NZ_CP053252|CRISPRCasFinder matches to NZ_CP020518 (Escherichia coli strain 222 plasmid unnamed2, complete sequence) position: , mismatch: 1, identity: 0.98

ttatataaaacgcttttcatcagccaaaaagttggttatgcttacctcgt	CRISPR spacer
ttatataaaacgcttttcatccgccaaaaagttggttatgcttacctcgt	Protospacer
********************* ****************************

11. spacer 1.1|2117|50|NZ_CP053252|CRISPRCasFinder matches to NZ_CP024865 (Escherichia coli strain AR_0015 plasmid unitig_3_pilon, complete sequence) position: , mismatch: 1, identity: 0.98

ttatataaaacgcttttcatcagccaaaaagttggttatgcttacctcgt	CRISPR spacer
ttatataaaacgcttttcatccgccaaaaagttggttatgcttacctcgt	Protospacer
********************* ****************************

12. spacer 1.1|2117|50|NZ_CP053252|CRISPRCasFinder matches to NZ_CP023368 (Escherichia coli strain 1428 plasmid p48, complete sequence) position: , mismatch: 2, identity: 0.96

ttatataaaacgcttttcatcagccaaaaagttggttatgcttacctcgt	CRISPR spacer
ttatataaaacgcttttcatccgccaaaaagttggttatgcttacctcat	Protospacer
********************* **************************.*

13. spacer 1.1|2117|50|NZ_CP053252|CRISPRCasFinder matches to CP025877 (Escherichia coli strain 503458 plasmid p503458_49, complete sequence) position: , mismatch: 3, identity: 0.94

ttatataaaacgcttttcatcagccaaaaagttggttatgcttacctcgt	CRISPR spacer
ttatataaaacacttttcatccgccaaaaagttggttatgcttacctcat	Protospacer
***********.********* **************************.*

14. spacer 1.1|2117|50|NZ_CP053252|CRISPRCasFinder matches to NZ_CP037450 (Escherichia coli strain ATCC 25922 plasmid unnamed, complete sequence) position: , mismatch: 3, identity: 0.94

ttatataaaacgcttttcatcagccaaaaagttggttatgcttacctcgt	CRISPR spacer
ttatataaaacacttttcatccgccaaaaagttggttatgcttacctcat	Protospacer
***********.********* **************************.*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

11615 : 46430

Vibrio_phage(40.0%)

protease,portal,plate,capsid,holin,tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001523080.1\|11615_12233_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	3.5e-86	80.9
WP_094316868.1\|12232_15079_-\|tail	tail fiber protein	Q858V4	Yersinia_virus	2.7e-173	47.0
WP_023908964.1\|15109_15691_-\|tail	phage tail protein I	A0A0C5AJ63	Bacteriophage	3.6e-16	40.0
WP_001705026.1\|15683_16808_-\|plate	baseplate J/gp47 family protein	A0A0C5AEG2	Bacteriophage	4.9e-86	44.2
WP_001523074.1\|16804_17125_-	hypothetical protein	NA	NA	NA	NA
WP_000635200.1\|17121_17589_-\|tail	phage tail protein	NA	NA	NA	NA
WP_001523073.1\|17585_18206_-\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	1.0e-29	51.6
WP_001705025.1\|18208_19210_-	phage late control D family protein	A0A067ZG47	Vibrio_phage	1.3e-69	42.5
WP_001523070.1\|19410_22203_-\|tail	phage tail tape measure protein	A0A097P6S4	Vibrio_phage	4.8e-18	39.6
WP_000450805.1\|22357_22639_-\|tail	phage tail assembly protein	A0A0C5AEP1	Bacteriophage	1.0e-05	37.4
WP_001706256.1\|22648_23170_-\|tail	phage major tail tube protein	A0A067ZJA9	Vibrio_phage	3.4e-50	57.2
WP_001706255.1\|23186_24650_-	hypothetical protein	A0A059WKP9	Vibrio_phage	1.4e-146	53.6
WP_001523067.1\|24649_24940_-	hypothetical protein	NA	NA	NA	NA
WP_000609134.1\|24940_25426_-	hypothetical protein	A0A067ZIL8	Vibrio_phage	3.0e-16	37.4
WP_001083980.1\|25422_25767_-	hypothetical protein	NA	NA	NA	NA
WP_001523066.1\|25766_26159_-	hypothetical protein	NA	NA	NA	NA
WP_001523065.1\|26159_27203_-\|capsid	major capsid protein	A0A059WRQ2	Vibrio_phage	8.8e-74	47.9
WP_001523063.1\|27223_27607_-	hypothetical protein	NA	NA	NA	NA
WP_171274535.1\|27616_28681_-\|protease	Clp protease ClpP	A0A067ZG37	Vibrio_phage	5.1e-77	48.0
WP_001022885.1\|28673_30248_-\|portal	phage portal protein	A0A067ZJA4	Vibrio_phage	1.2e-191	65.7
WP_001523057.1\|30244_30484_-	hypothetical protein	A0A067ZJ01	Vibrio_phage	6.8e-14	52.0
WP_001019009.1\|32358_32910_-	hypothetical protein	K4ICN8	Acidithiobacillus_phage	1.7e-07	29.4
WP_001185429.1\|32909_33500_-	ParB N-terminal domain-containing protein	A0A067ZI74	Vibrio_phage	1.6e-40	58.5
WP_171274536.1\|34056_34752_-	hypothetical protein	A0A1W6JTE1	Pseudomonas_phage	6.4e-28	34.2
WP_016238701.1\|34792_36166_-	ParB N-terminal domain-containing protein	NA	NA	NA	NA
WP_001523051.1\|36165_36789_-	ParB N-terminal domain-containing protein	A0A0E3JS81	Verrucomicrobia_phage	1.5e-33	43.2
WP_001523049.1\|37023_37434_-	hypothetical protein	Q8W634	Enterobacteria_phage	4.7e-39	78.6
WP_001141358.1\|37822_38122_-	hypothetical protein	NA	NA	NA	NA
WP_001222808.1\|38196_38394_-	hypothetical protein	NA	NA	NA	NA
WP_000867916.1\|38393_38663_-	hypothetical protein	NA	NA	NA	NA
WP_171274534.1\|38775_39369_-	S-adenosylmethionine-binding protein	G9L699	Escherichia_phage	1.4e-79	76.8
WP_000147212.1\|40045_40324_-	hypothetical protein	G8C7W1	Escherichia_phage	4.0e-18	52.8
WP_032154025.1\|40320_40866_-	glycoside hydrolase family 108 protein	A0A0U2S643	Escherichia_phage	1.5e-88	84.0
WP_000254764.1\|40849_41146_-\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	2.3e-27	63.7
WP_001271967.1\|41132_41528_-	membrane protein	K7PHB9	Enterobacterial_phage	6.1e-52	82.3
WP_023908961.1\|41906_42623_-	ead/Ea22-like family protein	A0A0F6TJR7	Escherichia_coli_O157_typing_phage	1.5e-69	92.6
WP_001705006.1\|42615_42960_-	hypothetical protein	NA	NA	NA	NA
WP_032154033.1\|42962_43574_-	phage family protein	M1F3E2	Salmonella_phage	2.3e-42	45.9
WP_001706266.1\|43570_43729_-	hypothetical protein	NA	NA	NA	NA
WP_001521425.1\|43758_44124_-	hypothetical protein	A0A2R2Z313	Escherichia_phage	3.1e-10	55.9
WP_000823235.1\|44120_44402_-	hypothetical protein	NA	NA	NA	NA
WP_016240767.1\|44479_45547_-	DUF3560 domain-containing protein	NA	NA	NA	NA
WP_001250512.1\|45716_46094_-	hypothetical protein	A0A2I7R3L8	Vibrio_phage	6.3e-06	35.1
WP_001270825.1\|46097_46430_-	DUF1064 domain-containing protein	A8ASP7	Listeria_phage	2.9e-15	39.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP053251

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP053251_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053251_1

639034-639166

Orphan

Consensus_repeat	Method
ACGCTGCCGCGTCTTATCGGGCCTACAAAAGTTCTGAACCGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP053251_1

>merge|NZ_CP053251|1|639034-639166|CRISPRCasFinder
ACGCTGCCGCGTCTTATCGGGCCTACAAAAGTTCTGAACCGTGGGCCGGATAAGGCGTTCACGCCGTATCCGGCATACAGTGCCCGATGCGACGCTGCCGCGTCTTATCGGGCCTACAAAAGTTCTGAACCGT

>NZ_CP053251|1|1|639034-639166|CRISPRCasFinder
ACGCTGCCGCGTCTTATCGGGCCTACAAAAGTTCTGAACCGT	GGGCCGGATAAGGCGTTCACGCCGTATCCGGCATACAGTGCCCGATGCG
ACGCTGCCGCGTCTTATCGGGCCTACAAAAGTTCTGAACCGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053251.1\|WP_001065498.1\|653842_654829_+\|stress-response-kinase-SrkA	unknown	unknown	gnl\|CDD\|236974
NZ_CP053251.1\|WP_001295263.1\|653496_653766_+\|YihD-family-protein	unknown	unknown	gnl\|CDD\|368826
NZ_CP053251.1\|WP_001192400.1\|636037_636526_-\|transcription/translation-regulatory-transformer-protein-RfaH	unknown	unknown	gnl\|CDD\|181611
NZ_CP053251.1\|WP_001305365.1\|631328_631934_+\|ubiquinone-biosynthesis-protein-UbiJ	unknown	unknown	gnl\|CDD\|225706
NZ_CP053251.1\|WP_000853963.1\|646204_646750_+\|menaquinone-dependent-protoporphyrinogen-IX-dehydrogenase	unknown	unknown	gnl\|CDD\|182966
NZ_CP053251.1\|WP_001295260.1\|633649_633919_+\|Sec-independent-protein-translocase-subunit-TatA	unknown	unknown	gnl\|CDD\|179592
NZ_CP053251.1\|WP_001540251.1\|636692_638186_+\|4-hydroxy-3-polyprenylbenzoate-decarboxylase	unknown	unknown	gnl\|CDD\|236796
NZ_CP053251.1\|WP_000725354.1\|654845_655472_+\|thiol:disulfide-interchange-protein-DsbA	unknown	unknown	gnl\|CDD\|182863
NZ_CP053251.1\|WP_001052191.1\|652842_653427_-\|molybdenum-cofactor-guanylyltransferase-MobA	unknown	unknown	gnl\|CDD\|234725
NZ_CP053251.1\|WP_000459600.1\|633922_634438_+\|Sec-independent-protein-translocase-subunit-TatB	unknown	unknown	gnl\|CDD\|179334
NZ_CP053251.1\|WP_001540253.1\|640377_642567_-\|fatty-acid-oxidation-complex-subunit-alpha-FadB	unknown	unknown	gnl\|CDD\|183293
NZ_CP053251.1\|WP_000209826.1\|638231_638933_+\|NAD(P)H-flavin-reductase	unknown	unknown	gnl\|CDD\|236142
NZ_CP053251.1\|WP_000187545.1\|631930_633571_+\|ubiquinone-biosynthesis-regulatory-protein-kinase-UbiB	unknown	unknown	gnl\|CDD\|235310
NZ_CP053251.1\|WP_000227959.1\|630559_631315_+\|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE	unknown	unknown	gnl\|CDD\|234689
NZ_CP053251.1\|WP_000907613.1\|652333_652861_-\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|236750
NZ_CP053251.1\|WP_000109949.1\|634440_635217_+\|Sec-independent-protein-translocase-subunit-TatC	unknown	unknown	gnl\|CDD\|182840
NZ_CP053251.1\|WP_001540252.1\|639204_640368_-\|acetyl-CoA-C-acyltransferase-FadA	unknown	unknown	gnl\|CDD\|181592
NZ_CP053251.1\|WP_001540254.1\|642756_644088_+\|Xaa-Pro-dipeptidase	unknown	unknown	gnl\|CDD\|237444
NZ_CP053251.1\|WP_001298607.1\|635258_636041_+\|3'-5'-ssDNA/RNA-exonuclease-TatD	unknown	unknown	gnl\|CDD\|182449
NZ_CP053251.1\|WP_000545665.1\|644741_646193_+\|Trk-system-potassium-transporter-TrkH	unknown	unknown	gnl\|CDD\|182698

Protein	Function_ID	Function_description	E-value
NZ_CP053251.1\|WP_001065498.1\|653842_654829_+\|stress-response-kinase-SrkA	gnl\|CDD\|236974	PRK11768, PRK11768, serine/threonine protein kinase.	0
NZ_CP053251.1\|WP_001295263.1\|653496_653766_+\|YihD-family-protein	gnl\|CDD\|368826	pfam06288, DUF1040, Protein of unknown function (DUF1040). This family consists of several bacterial YihD proteins of unknown function.	4.97051e-53
NZ_CP053251.1\|WP_001192400.1\|636037_636526_-\|transcription/translation-regulatory-transformer-protein-RfaH	gnl\|CDD\|181611	PRK09014, rfaH, transcription/translation regulatory transformer protein RfaH.	7.04858e-121
NZ_CP053251.1\|WP_001305365.1\|631328_631934_+\|ubiquinone-biosynthesis-protein-UbiJ	gnl\|CDD\|225706	COG3165, COG3165, Uncharacterized protein conserved in bacteria [Function unknown].	1.44088e-93
NZ_CP053251.1\|WP_000853963.1\|646204_646750_+\|menaquinone-dependent-protoporphyrinogen-IX-dehydrogenase	gnl\|CDD\|182966	PRK11104, hemG, menaquinone-dependent protoporphyrinogen IX dehydrogenase.	6.96931e-127
NZ_CP053251.1\|WP_001295260.1\|633649_633919_+\|Sec-independent-protein-translocase-subunit-TatA	gnl\|CDD\|179592	PRK03554, tatA, Sec-independent protein translocase subunit TatA.	6.75664e-44
NZ_CP053251.1\|WP_001540251.1\|636692_638186_+\|4-hydroxy-3-polyprenylbenzoate-decarboxylase	gnl\|CDD\|236796	PRK10922, PRK10922, 4-hydroxy-3-polyprenylbenzoate decarboxylase.	0
NZ_CP053251.1\|WP_000725354.1\|654845_655472_+\|thiol:disulfide-interchange-protein-DsbA	gnl\|CDD\|182863	PRK10954, PRK10954, thiol:disulfide interchange protein DsbA.	1.16227e-144
NZ_CP053251.1\|WP_001052191.1\|652842_653427_-\|molybdenum-cofactor-guanylyltransferase-MobA	gnl\|CDD\|234725	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed.	4.97316e-99
NZ_CP053251.1\|WP_000459600.1\|633922_634438_+\|Sec-independent-protein-translocase-subunit-TatB	gnl\|CDD\|179334	PRK01770, PRK01770, Sec-independent protein translocase subunit TatB.	4.56825e-89
NZ_CP053251.1\|WP_001540253.1\|640377_642567_-\|fatty-acid-oxidation-complex-subunit-alpha-FadB	gnl\|CDD\|183293	PRK11730, fadB, fatty acid oxidation complex subunit alpha FadB.	0
NZ_CP053251.1\|WP_000209826.1\|638231_638933_+\|NAD(P)H-flavin-reductase	gnl\|CDD\|236142	PRK08051, fre, FMN reductase; Validated.	4.73079e-172
NZ_CP053251.1\|WP_000187545.1\|631930_633571_+\|ubiquinone-biosynthesis-regulatory-protein-kinase-UbiB	gnl\|CDD\|235310	PRK04750, ubiB, putative ubiquinone biosynthesis protein UbiB; Reviewed.	0
NZ_CP053251.1\|WP_000227959.1\|630559_631315_+\|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE	gnl\|CDD\|234689	PRK00216, ubiE, bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE.	1.2623e-150
NZ_CP053251.1\|WP_000907613.1\|652333_652861_-\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	gnl\|CDD\|236750	PRK10751, PRK10751, molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional.	1.11706e-122
NZ_CP053251.1\|WP_000109949.1\|634440_635217_+\|Sec-independent-protein-translocase-subunit-TatC	gnl\|CDD\|182840	PRK10921, PRK10921, Sec-independent protein translocase subunit TatC.	0
NZ_CP053251.1\|WP_001540252.1\|639204_640368_-\|acetyl-CoA-C-acyltransferase-FadA	gnl\|CDD\|181592	PRK08947, fadA, 3-ketoacyl-CoA thiolase; Reviewed.	0
NZ_CP053251.1\|WP_001540254.1\|642756_644088_+\|Xaa-Pro-dipeptidase	gnl\|CDD\|237444	PRK13607, PRK13607, proline dipeptidase; Provisional.	0
NZ_CP053251.1\|WP_001298607.1\|635258_636041_+\|3'-5'-ssDNA/RNA-exonuclease-TatD	gnl\|CDD\|182449	PRK10425, PRK10425, 3'-5' ssDNA/RNA exonuclease TatD.	0
NZ_CP053251.1\|WP_000545665.1\|644741_646193_+\|Trk-system-potassium-transporter-TrkH	gnl\|CDD\|182698	PRK10750, PRK10750, Trk system potassium transporter TrkH.	0

>NZ_CP053251.1|WP_000209826.1|638231_638933_+|NAD(P)H-flavin-reductase
MTTLSCKVTSVEAITDTVYRVRIVPDAAFSFRAGQYLMVVMDERDKRPFSMASTPDEKGFIELHIGASEINLYAKAVMDRILKDHQIVVDIPHGEAWLRDDEERPMILIAGGTGFSYARSILLTALARNPNRDITIYWGGREEQHLYDLCELEALSLKHPGLQVVPVVEQPEAGWRGRTGTVLTAVLQDHGTLAEHDIYIAGRFEMAKIARDLFCSERNAREDRLFGDAFAFI
>NZ_CP053251.1|WP_001540251.1|636692_638186_+|4-hydroxy-3-polyprenylbenzoate-decarboxylase
MDAMKYNDLRDFLTLLEQQGELKRVTLPVDPHLEITEIADRTLRAGGPALLFENPKGYSMPVLCNLFGTPKRVAMGMGQEDVSALREVGKLLAFLKEPEPPKGFRDLFDKLPQFKQVLNMPTKRLRGAPCQQKIVSGDDVDLNRIPIMTCWSEDAAPLITWGLTVTRGPHKERQNLGIYRQQLIGKNKLIMRWLSHRGGALDYQEWCAAHPGERFPVSVALGADPATILGAVTPVPDTLSEYAFAGLLRGTKTEVVKCISNDLEVPASAEIVLEGYIEQGETAPEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGVALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTIKKQYAGHAKRVMMGVWSFLRQFMYTKFVIVCDDDVNARDWNDVIWAITTRMDPARDTVLVENTPIDYLDFASPVSGLGSKMGLDATNKWPGETQREWGRPIKKDPDVVAHIDAIWDELAIFNNGKSA
>NZ_CP053251.1|WP_001192400.1|636037_636526_-|transcription/translation-regulatory-transformer-protein-RfaH
MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPSTPYPGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL
>NZ_CP053251.1|WP_001298607.1|635258_636041_+|3'-5'-ssDNA/RNA-exonuclease-TatD
MFDIGVNLTSSQFAKDRDDVVARAFDAGVNGLLITGTNLRESQQAQKLARQYSSCWSTAGVHPHDSSQWQAVTEEAIIELAAQPEVVAIGECGLDFNRNFSTPEEQELAFVAQLRIAAELNMPVFMHCRDAHERFMTLLEPWLDKLPGAVLHCFTGTREEMQACVARGIYIGITGWVCDERRGLELRELLPLIPAEKLLIETDAPYLLPRDLTPKPSSRRNEPAHLPHILQRIAHWRGEDAAWLAATTDANVKTLFGIAF
>NZ_CP053251.1|WP_000109949.1|634440_635217_+|Sec-independent-protein-translocase-subunit-TatC
MSVEDTQPLITHLIELRKRLLNCIISVIVIFLCLVYFANDIYHLVSAPLIKQLPQGSTMIATDVASPFFTPIKLTFMVSLILSAPVILYQVWAFIAPALYKHERRLVVPLLVSSSLLFYIGMAFAYFVVFPLAFGFLANTAPEGVQVSTDIASYLSFVMALFMAFGVSFEVPVAIVLLCWMGITSPEDLRKKRPYVLVGAFVVGMLLTPPDVFSQTLLAIPMYCLFEIGVFFSRFYVGKGRNREEENDAEAESEKTEE
>NZ_CP053251.1|WP_000459600.1|633922_634438_+|Sec-independent-protein-translocase-subunit-TatB
MFDIGFSELLLVFIIGLVVLGPQRLPVAVKTVAGWIRALRSLATTVQNELTQELKLQEFQDSLKKVEKASLTNLTPELKASMDELRQAAESMKRSYVANDPEKASDEAHTIHNPVVKDNETAHEGVTPAAAQTQASSPEQKPETTPEPVVKPAADAEPKTAAPSPSSSDKP
>NZ_CP053251.1|WP_001295260.1|633649_633919_+|Sec-independent-protein-translocase-subunit-TatA
MGGISIWQLLIIAVIVVLLFGTKKLGSIGSDLGASIKGFKKAMSDDEPKQDKTSQDADFTAKTIADKQADTNQEQAKTEDAKRHDKEQV
>NZ_CP053251.1|WP_000187545.1|631930_633571_+|ubiquinone-biosynthesis-regulatory-protein-kinase-UbiB
MTPGEVRRLYFIIRTFLSYGLDELIPKMRITLPLRLWRYSLFWMPNRHKDKPLGERLRLALQELGPVWIKFGQMLSTRRDLFPPHIADQLALLQDKVAPFDGKLAKQQIEAAMGGLPVEAWFDDFEIKPLASASIAQVHTARLKSNGKEVVIKVIRPDILPVIKADLKLIYRLARWVPRLLPDGRRLRPTEVVREYEKTLIDELNLLRESANAIQLRRNFEDSPMLYIPEVYPDYCSEGMMVMERIYGIPVSDVATLEKNGTNMKLLAERGVQVFFTQVFRDSFFHADMHPGNIFVSYEHPENPKYIGIDCGIVGSLNKEDKRYLAENFIAFFNRDYRKVAELHVDSGWVPPDTNVEEFEFAIRTVCEPIFEKPLAEISFGHVLLNLFNTARRFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFLESWIKDQVGIPALVRAFKEKAPFWVEKMPELPELVYDSLRQGKYLQHSVDKIARELQSNHVRQGQSRYFLGIGATLVLSGTFLLVSRPEWGLMPGWLMAGGLIAWFVGWRKTR
>NZ_CP053251.1|WP_001305365.1|631328_631934_+|ubiquinone-biosynthesis-protein-UbiJ
MPFKPLVTAGIESLLNTFLYRSPALKTARSRLLGKVLRVEVKGFSTSLILVFSERQVDVLGEWAGDADCTVIAYASVLPKLRDRQQLAALIRSGELEVQGDIQVVQNFVALADLAEFDPAELLAPYTGDIAAEGISKALRGGAKFLHHGIKRQQCYVAEAITEEWRMAPGPLEVAWFAEETAAVERAVDALTKRLEKLEAK
>NZ_CP053251.1|WP_000227959.1|630559_631315_+|bifunctional-demethylmenaquinone-methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol-methylase-UbiE
MVDKSQETTHFGFQTVAKEQKADMVAHVFHSVASKYDVMNDLMSFGIHRLWKRFTIDCSGVRRGQTVLDLAGGTGDLTAKFSRLVGETGKVVLADINESMLKMGREKLRNIGVIGNVEYVQANAEALPFPDNTFDCITISFGLRNVTDKDKALRSMYRVLKPGGRLLVLEFSKPIIEPLSKAYDAYSFHVLPRIGSLVANDADSYRYLAESIRMHPDQDTLKTMMQDAGFESVDYYNLTAGVVALHRGYKF
>NZ_CP053251.1|WP_001540252.1|639204_640368_-|acetyl-CoA-C-acyltransferase-FadA
MEQVVIVDAIRTPMGRSKGGAFRNVRAEDLSAHLMRSLLARNPALEAAALDDIYWGCVQQTLEQGFNIARNAALLAEVPHSVPAVTVNRLCGSSMQALHDAARMIMTGDAQACLVGGVEHMGHVPMSHGVDFHPGLSRNVAKAAGMMGLTAEMLARMHGISREMQDAFAARSHARAWAATQSGAFKNEIIPTSGHDADGVLKQFNYDEVIRPETTVEALTTLRPAFDPVSGTVTAGTSSALSDGAAAMLVMSESRARELGLKPRARVRSMAVVGCDPSIMGYGPVPASKLALKKAGLSASDIGVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMEHKDVQFGLATMCIGLGQGIATVFERV
>NZ_CP053251.1|WP_001540253.1|640377_642567_-|fatty-acid-oxidation-complex-subunit-alpha-FadB
MLYKGDTLYLDWLEDGIAELVFDAPGSVNKLDTATVASLGEAIGVLEQQSDLKGLLLRSNKAAFIVGADITEFLSLFLVPEEQLSQWLHFANSVFNRLEDLPVPTIAAVNGYALGGGCECVLATDYRLATPDLRIGLPETKLGIMPGFGGSVRMPRMLGADSALEIIAAGKDVGADQALKIGLVDGVVKAEKLVEGAMAILRQAINGDLDWKAKRQPKLEPLKLSKIEAAMSFTIAKGMVAQTAGKHYPAPITAVKTIEAAARFGREEALNLENKSFVPLAHTNEARALVGIFLNDQYVKGKAKKLTKDVETPKQAAVLGAGIMGGGIAYQSAWKGVPVVMKDINDKSLTLGMTEAAKLLNKQLERGKIDGLKLAGVISTIHPTLDYAGFDRVDVVVEAVVENPKVKKAVLAETEQKVRPDTVLASNTSTIPISELANALERPENFCGMHFFNPVHRMPLVEIIRGEKSSDETIAKVVAWASKMGKTPIVVNDCPGFFVNRVLFPYFAGFSQLLRDGADFRKIDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAAGFPQRMQKDYRDAIDALFNANRFGQKNGLGFWRYKEDSKGKPKKEEDAAVDDLLAEVSQPKRDFSEEEIIARMMIPMVNEVVRCLEEGIIATPAEADMALVYGLGFPPFHGGAFRWLDTLGSAKYLDMAQQYQHLGPLYEVPEGLRNKARHNEQYYPPVEPARPVGDLKTA
>NZ_CP053251.1|WP_001540254.1|642756_644088_+|Xaa-Pro-dipeptidase
MESLASLYKNHIATLQERTRDALARFKLDALLIHSGELFNVFLDDHPYPFKVNPQFKAWVPVTQVPNCWLLVDGVNKPKLWFYLPVDYWHNVEPLPNSFWTEDVEVIALPKADGIGSLLPAARGNIGYIGPVPERALQLGIEASNINPKGVIDYLHYYRSFKTEYELACMREAQKMAVNGHRAAEEAFRSGMSEFDINIAYLTATGHRDTDVPYSNIVALNEHAAVLHYTKLDHQAPEEMRSFLLDAGAEYNGYAADLTRTWSAKSDNDYAQLVKDVNDEQLALIANMKAGVSYVDYHIQFHQRIAKLLRKHQIITDMSEEAMVENDLTGPFMPHGIGHPLGLQVHDVAGFMQDDSGTHLAAPAKYPYLRCTRILQPGMVLTIEPGIYFIESLLAPWREGQFSKHFNWQKIEALKPFGGIRIEDNVVIHENNVENMTRDLKLA
>NZ_CP053251.1|WP_000545665.1|644741_646193_+|Trk-system-potassium-transporter-TrkH
MHFRAITRIVGLLVILFSGTMIIPGLVALIYRDGAGRAFTQTFFVALAIGSMLWWPNRKEKGELKSREGFLIVVLFWTVLGSVGALPFIFSESPNLTITDAFFESFSGLTTTGATTLVGLDSLPHAILFYRQMLQWFGGMGIIVLAVAILPILGVGGMQLYRAEMPGPLKDNKMRPRIAETAKTLWLIYVLLTVACALALWFAGMDAFDAIGHSFATIAIGGFSTHDASIGYFDSPTINTIIAIFLLISGCNYGLHFSLLSGRSLKVYWRDPEFRMFIGVQFSLVVICTLVLWFHNVYSSALMTINQAFFQVVSMATTAGFTTDSIARWPLFLPVLLLCSAFIGGCAGSTGGGLKVIRILLLFKQGNRELKRLVHPNAVYSIKLGNRALPERILEAVWGFFSAYALVFIVSMLAIIATGVDDFSAFASVVATLNNLGPGLGVVADNFTSMNPVAKWILIANMLFGRLEVFTLLVLFTPTFWRE
>NZ_CP053251.1|WP_000853963.1|646204_646750_+|menaquinone-dependent-protoporphyrinogen-IX-dehydrogenase
MKTLILFSTRDGQTREIASYLASELKELGIQADVANVHRIEEPQWENYDRVVIGASIRYGHYHSAFQEFVKKHATRLNSMPSAFYSVNLVARKPEKRTPQTNSYARKFLMSSQWRPDRCAVIAGALRYPRYRWYDRFMIKLIMKMSGGETDTRKEVVYTDWEQVANFAREIAHLTDKPTLK
>NZ_CP053251.1|WP_000907613.1|652333_652861_-|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B
MAGKTMIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRKAGAAQTIVASQQRWALMTETPDEEELDLHFLASRMDTSKLDLILVEGFKHEEIAKIVLFRDGAGHRPEELVIDRHVIAVASDVPLNLDVALLDINDVEGLADFVVEWMQKQDG
>NZ_CP053251.1|WP_001052191.1|652842_653427_-|molybdenum-cofactor-guanylyltransferase-MobA
MNLMTTITGVVLAGGKARRMGGVDKGLLELNGKPLWQHVADALMTQLSHVVVNANRHQEIYQVSGLKVIEDSLADYPGPLAGMLSVMQQESGEWFLFCPCDTPYIPHDLASRLNHQRKDAPVVWVHDGERDHPTIALVNRAIEPLLLEYLQAGERRVMAFMRLAGGHAVDFSDRKEAFINVNTPEELARWQEKR
>NZ_CP053251.1|WP_001295263.1|653496_653766_+|YihD-family-protein
MKCKRLNEVIELLQPAWQKEPDLNLLQFLQKLAKESGFDGELADLTDDILIYHLKMRDSAKDAVIPGLQKDYEEDFKTALLRARGVIKE
>NZ_CP053251.1|WP_001065498.1|653842_654829_+|stress-response-kinase-SrkA
MNNSAFTFQTLHPDTIMDALFEHGIRVDSGLTPLNSYENRVYQFQDEDRRRFVVKFYRPERWTADQILEEHQFALQLVNDEVPVAAPVAFNGQTLLNHQGFYFAVFPSVGGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDATLIPSGLKAAFLKATDELIAAVTAHWREDFTVLRLHGDCHAGNILWRDGPMFVDLDDARNGPAVQDLWMLLNGDKAEQRMQLETIIEAYEEFSEFDTAEIGLIEPLRAMRLVYYLAWLMRRWADPAFPKNFPWLTGEDYWLRQTVTFIEQAKVLQEPPLQLTPMY
>NZ_CP053251.1|WP_000725354.1|654845_655472_+|thiol:disulfide-interchange-protein-DsbA
MKKIWLALAGLVLAFSASAAQYEDGKQYTTLEKQVAGAPQVLEFFSFFCPHCYQFEEVLHISDNVKKKLPEGVKMTKYHVNFMGGDLGKELTQAWAVAMALGVEDKVTVPLFEGVQKTQTIRSASDIRDVFINAGIKGEEYDAAWNSFVVKSLVAQQEKAAADVQLRGVPAMFVNGKYQLNPQGMDTSNMDVFVQQYADTVKYLSEKK

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Crispr_ID: NZ_CP053251_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053251_2

1223556-1223705

Orphan

Consensus_repeat	Method
CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP053251_2

>merge|NZ_CP053251|2|1223556-1223705|CRISPRCasFinder
CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCATGCCGCATCCGACAATAACAGCATTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTTCA

>NZ_CP053251|2|2|1223556-1223705|CRISPRCasFinder
CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	TGCCGCATCCGACAATAACAGCATTGCCTGATGCGACGCTTG
CGCGTCTTATCAGGCCTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTTCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053251.1\|WP_001128336.1\|1230507_1231827_-\|gnt-II-system-L-idonate-transporter	unknown	unknown	gnl\|CDD\|129873
NZ_CP053251.1\|WP_001540570.1\|1227862_1229365_-\|DUF853-domain-containing-protein	unknown	unknown	gnl\|CDD\|283518
NZ_CP053251.1\|WP_000998695.1\|1231891_1232656_-\|gluconate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|181225
NZ_CP053251.1\|WP_000500712.1\|1212567_1213281_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|183714
NZ_CP053251.1\|WP_000896738.1\|1233927_1234491_+\|gluconokinase	unknown	unknown	gnl\|CDD\|182097
NZ_CP053251.1\|WP_000002953.1\|1217676_1218093_+\|ribonuclease-E-inhibitor-RraB	unknown	unknown	gnl\|CDD\|236876
NZ_CP053251.1\|WP_001304655.1\|1229442_1230441_-\|DNA-binding-transcriptional-regulator-IdnR	unknown	unknown	gnl\|CDD\|380489
NZ_CP053251.1\|WP_171274427.1\|1222926_1223388_-\|DNA-polymerase-III-subunit-chi	unknown	unknown	gnl\|CDD\|235581
NZ_CP053251.1\|WP_000256663.1\|1213351_1213945_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP053251.1\|WP_000584107.1\|1225519_1226620_+\|LPS-export-ABC-transporter-permease-LptF	unknown	unknown	gnl\|CDD\|185075
NZ_CP053251.1\|WP_000079674.1\|1218835_1220032_+\|DUF898-domain-containing-protein	unknown	unknown	gnl\|CDD\|226719
NZ_CP053251.1\|WP_001059398.1\|1218138_1218642_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP053251.1\|WP_000397144.1\|1223741_1225253_-\|leucyl-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
NZ_CP053251.1\|WP_000583467.1\|1214089_1214542_+\|toxin-antitoxin-biofilm-protein-TabA	unknown	unknown	gnl\|CDD\|225345
NZ_CP053251.1\|WP_001350789.1\|1234494_1235514_-\|NADPH-dependent-aldehyde-reductase-Ahr	unknown	unknown	gnl\|CDD\|176186
NZ_CP053251.1\|WP_001540564.1\|1214664_1216455_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053251.1\|WP_001295681.1\|1226619_1227702_+\|LPS-export-ABC-transporter-permease-LptG	unknown	unknown	gnl\|CDD\|237900
NZ_CP053251.1\|WP_000012907.1\|1216510_1217515_-\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|179587
NZ_CP053251.1\|WP_001197423.1\|1232679_1233711_-\|L-idonate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|182130
NZ_CP053251.1\|WP_000416379.1\|1220087_1222943_-\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582

Protein	Function_ID	Function_description	E-value
NZ_CP053251.1\|WP_001128336.1\|1230507_1231827_-\|gnt-II-system-L-idonate-transporter	gnl\|CDD\|129873	TIGR00791, Gluconate_permease, gluconate transporter. This family includes known gluconate transporters of E. coli and Bacillus species as well as an idonate transporter from E. coli. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
NZ_CP053251.1\|WP_001540570.1\|1227862_1229365_-\|DUF853-domain-containing-protein	gnl\|CDD\|283518	pfam05872, DUF853, Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. BMEI1370 is thought to be an ATPase.	0
NZ_CP053251.1\|WP_000998695.1\|1231891_1232656_-\|gluconate-5-dehydrogenase	gnl\|CDD\|181225	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional.	0
NZ_CP053251.1\|WP_000500712.1\|1212567_1213281_-\|SDR-family-oxidoreductase	gnl\|CDD\|183714	PRK12742, PRK12742, SDR family oxidoreductase.	2.19644e-150
NZ_CP053251.1\|WP_000896738.1\|1233927_1234491_+\|gluconokinase	gnl\|CDD\|182097	PRK09825, idnK, gluconokinase.	1.3617e-126
NZ_CP053251.1\|WP_000002953.1\|1217676_1218093_+\|ribonuclease-E-inhibitor-RraB	gnl\|CDD\|236876	PRK11191, PRK11191, ribonuclease E inhibitor RraB.	4.50628e-69
NZ_CP053251.1\|WP_001304655.1\|1229442_1230441_-\|DNA-binding-transcriptional-regulator-IdnR	gnl\|CDD\|380489	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding, which in turn changes the DNA binding affinity of the repressor.	1.9949e-108
NZ_CP053251.1\|WP_171274427.1\|1222926_1223388_-\|DNA-polymerase-III-subunit-chi	gnl\|CDD\|235581	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated.	3.7644e-67
NZ_CP053251.1\|WP_000256663.1\|1213351_1213945_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	6.02663e-10
NZ_CP053251.1\|WP_000584107.1\|1225519_1226620_+\|LPS-export-ABC-transporter-permease-LptF	gnl\|CDD\|185075	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional.	0
NZ_CP053251.1\|WP_000079674.1\|1218835_1220032_+\|DUF898-domain-containing-protein	gnl\|CDD\|226719	COG4269, COG4269, Predicted membrane protein [Function unknown].	2.6336e-151
NZ_CP053251.1\|WP_001059398.1\|1218138_1218642_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.01499e-18
NZ_CP053251.1\|WP_000397144.1\|1223741_1225253_-\|leucyl-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
NZ_CP053251.1\|WP_000583467.1\|1214089_1214542_+\|toxin-antitoxin-biofilm-protein-TabA	gnl\|CDD\|225345	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism].	1.042e-69
NZ_CP053251.1\|WP_001350789.1\|1234494_1235514_-\|NADPH-dependent-aldehyde-reductase-Ahr	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	1.56042e-169
NZ_CP053251.1\|WP_001295681.1\|1226619_1227702_+\|LPS-export-ABC-transporter-permease-LptG	gnl\|CDD\|237900	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional.	0
NZ_CP053251.1\|WP_000012907.1\|1216510_1217515_-\|ornithine-carbamoyltransferase	gnl\|CDD\|179587	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional.	0
NZ_CP053251.1\|WP_001197423.1\|1232679_1233711_-\|L-idonate-5-dehydrogenase	gnl\|CDD\|182130	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional.	0
NZ_CP053251.1\|WP_000416379.1\|1220087_1222943_-\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0

>NZ_CP053251.1|WP_171274427.1|1222926_1223388_-|DNA-polymerase-III-subunit-chi
MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGPRGGAPVEIAWPQKRSSSPRDILISLRTSFADFATAFTEVVDFVPYEDSLKQLARERYKAYRVAGFNLNTATCGNNGKDI
>NZ_CP053251.1|WP_000416379.1|1220087_1222943_-|valine--tRNA-ligase
MEKTYNPQDIEQPLYEHWEKQGYFKPNGDESQESFCIMIPPPNVTGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKIAAEEGKTRHDYGREAFIDKIWEWKAESGGTITRQMRRLGNSVDWERERFTMDEGLSNAVKEVFVRLYKEDLIYRGKRLVNWDPKLRTAISDLEVENRESKGSMWHIRYPLADGAKTADGKDYLVVATTRPETLLGDTGVAVNPEDPRYKDLIGKYVILPLVNRRIPIVGDEHADMEKGTGCVKITPAHDFNDYEVGKRHALPMINILTFDGDIRESAQVFDTKGNESDVYSSEIPAEFQKLERFAARKAVVAAVDALGLLEEIKPHDLTVPYGDRGGVVIEPMLTDQWYVRADVLAKPAVEAVENGDIQFVPKQYENMYFSWMRDIQDWCISRQLWWGHRIPAWYDEAGNVYVGRNEDEVRKENNLGADVALRQDEDVLDTWFSSALWTFSTLGWPENTDALRQFHPTSVMVSGFDIIFFWIARMIMMTMHFIKDENGKPQVPFHTVYMTGLIRDDEGQKMSKSKGNVIDPLDMVDGISLPELLEKRTGNMMQPQLADKIRKRTEKQFPNGIEPHGTDALRFTLAALASTGRDINWDMKRLEGYRNFCNKLWNASRFVLMNTEGQDCGFNGGEMTLSLADRWILAEFNQTIKAYREALDSFRFDIAAGILYEFTWNQFCDWYLELTKPVMNGGTDAELRGTRHTLVTVLEGLLRLAHPIIPFITETIWQRVKVLCGITADTIMLQPFPQYDASQVDEAALADTEWLKQAIVAVRNIRAEMNIAPGKPLELLLRGCSADAERRVNENRGFLQTLARLESITVLPADDKGPVSVTKIIDGAELLIPMAGLINKEDELARLAKEVAKIEGEISRIENKLANEGFVARAPEAVIAKEREKLEGYAEAKAKLIEQQAVIAAL
>NZ_CP053251.1|WP_000079674.1|1218835_1220032_+|DUF898-domain-containing-protein
MAQVINEMDVPSHSFVFHGTGERYFLICVVNVLLTIITLGIYLPWALMKCRRYLYANMEVNGQRFSYGITGGNVFFSCLVFVFFYFAILMTVSADMPLVGCVLTLSLLVLLIFMAAKGLRYQALMTSLNGVRFSFNCSMKGFWWVTFFLPILMAIGMGTVFFISTKMLHANSSSSVIISVVLMAIVGIVSIGIFNGTLYSLVMSFLWSNTSFGIHRFKVKLDTAYCIKYAILAFLALLPFLAVAGYIIFDQILNAYDSSVYANDDIENLQQFMEMQRKMIIAQLIYYFGIAVSTSYLTVSLRNHFMSNLSLNDGRIRFRSTLTYHGMLYRMCALVVISGITGGLAYPLLKIWMIDWQAKNTYLLGDLDDLPLINKEEQPDKGFLASISRGIMPSLPFL
>NZ_CP053251.1|WP_001059398.1|1218138_1218642_-|GNAT-family-N-acetyltransferase
MNNIAPQSPVMRRLTLQDNPAIARVIRQVSAEYGLTADKGYTVADPNLDELYQVYSQPGHAYWVVEYEGEVVGGGGIAPLAGSESDICELQKMYFLPAIRGKGLAKKLALMAMEQAREMGFKRCYLETTAFLKEAIALYEHLGFEHIDYALGCTGHVDCEVRMLREL
>NZ_CP053251.1|WP_000002953.1|1217676_1218093_+|ribonuclease-E-inhibitor-RraB
MANPEQLEEQREETRLIIEELLEDGSDPDALYTIEHHLSADDLETLEKAAVEAFKLGYEVTDPEELEVEDGDIVICCDILSECALNADLIDAQVEQLMTLAEKFDVEYDGWGTYFEDPNGEDGDDEDFVDEDDDGVRH
>NZ_CP053251.1|WP_000012907.1|1216510_1217515_-|ornithine-carbamoyltransferase
MSGFYHKHFLKLLDFTPAELNSLLQLAAKLKADKKSGKEEAKLTGKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDVWVSMGEAKEKWAERIALLRDYQVNSKMMQLTGNPEVKFLHCLPAFHDDQTTLGKKMAEEFGLHGGMEVTDEVFESAASIVFDQAENRMHTIKAVMVATLSK
>NZ_CP053251.1|WP_001540564.1|1214664_1216455_+|hypothetical-protein
MSKISDLNYSQHITLADNFKQKNEVLDTWYVGMNDFARIAGGQNSRSNILSPRAFLEFLAKIFTLGYVDFSKRSNEAGRNMMAHIESSSYSKDTDGNEKMKFYMNNPEGERADLSKVKIEITLASVSTKGIREGHTVIIFKQSDGSTNRYEGKSFERKDDSSLHLITNKILACYQREANKEIARLLNNHQKLNNLQKLNNLQKLNNIQELNNSQELNNSQELNDSQDLNDSQDLNDSQDLNDSQELNNSQDLNNSQVSCKGSVDSTIADLLEKPLNNALLAIRNEHLLLMPHVCSESISYLLGENGILEEIDKLYESNDHGIDNHKKGNNEINDIMINLSHILIDSLDDAKVNLTPVIDSMLETFLKFPYIYDVRILEWCFNKSMQYSDDTKKIKHACSVINHINLRSDQSKIAEALFFNLDKEPYKNSPELQGLIWNKLVVYVNDFNLSNREKTYLIQRIFNNVESVFNKVPVSILVNDIFLKDFFMKNPEMINWYFPQLLNTYEGEKIYFDKLGYDFNNKESNDEIMKNQPNDVINEKINNELKLRFRMMQTILKSRVNVLPYINEQRLNKLNPPENLRIAIEKFGWNNKPITA
>NZ_CP053251.1|WP_000583467.1|1214089_1214542_+|toxin-antitoxin-biofilm-protein-TabA
MIIGNIHNLQPWLPQELRQAIEHIKAHVTAETPKGKHDIEGNRLFYLISEDMTEPHEARRAEYHARYLDIQIVLKGQEGMTFSTQPAGTPDTDWLADKDIAFLPEGVDEKTVILNEGDFVVFYPGEVHKPLCAVGAPARVRKAVVKMLMA
>NZ_CP053251.1|WP_000256663.1|1213351_1213945_+|TetR/AcrR-family-transcriptional-regulator
MVTKKQSRVPGRPRRFAPEQAVSAAKVLFHQKGFDAVSVAEVTDYLGINPPSLYAAFGNKAGLFSRVLNEYVGTEAIPLADILRDDRPVGECLAEVLKEAARRYSQNGGCAGCMVLEGIHSHDPQARDIAVQYYHAAETAIYDYIARRHPQSAQCVTDFMSTVMSGLSAKAREGHSIEQLCATAALAGEAIKTILKE
>NZ_CP053251.1|WP_000500712.1|1212567_1213281_-|SDR-family-oxidoreductase
MGAFTGKTVLILGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQETGATAVFTDSADRDAVIDVVRKSGALDILVVNAGIGVFGDALELNADDIDRLFKINIHAPYHASVEAARQMPEGGRILIIGSVNGDRMPVAGMAAYAASKSALQGMARGLARDFGPRGITINVVQPGPIDTDANPANGPMRDMLHSFMAIKRHGQPEEVAGMVAWLAGPEASFVTGAMHTIDGAFGA
>NZ_CP053251.1|WP_000397144.1|1223741_1225253_-|leucyl-aminopeptidase
MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFNVPTRRELTSGERAIQHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFEPEAVIDVATLTGACVIALGHHITGLMANHNPLAHELIAASEQSGDRAWRLPLGDEYQEQLESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAGTAWRSGKAKGATGRPVALLAQFLLNRAGFNGEE
>NZ_CP053251.1|WP_000584107.1|1225519_1226620_+|LPS-export-ABC-transporter-permease-LptF
MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAINVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLWDTVPVRRLRASFSRKGAV
>NZ_CP053251.1|WP_001295681.1|1226619_1227702_+|LPS-export-ABC-transporter-permease-LptG
MQPFGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLHNYVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRKS
>NZ_CP053251.1|WP_001540570.1|1227862_1229365_-|DUF853-domain-containing-protein
MSKPLLIARTLDTELFLLPGMANRHGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVKGDLTGVAAEGTASEKLLARLKNIGVNDWQPHTNPVVVWDIFGEKGHPVRATVSDLGPLLLARLLNLNDVQSGVLNIIFRIADDQGLLLLDFKDLRAITQYIGDNAKSFQNQYGNISSASVGAIQRGLLSLEQQGAAHFFGEPMLDIKDWMRTDANGKGVINILRAEKLYQMPKLYAASLLWMLSELYEQLPEAGDLEKPKLVFFFDEAHLLFNDAPQVLLDKIEQVIRLIRSKGVGVWFVSQNPSDIPDNVLGQLGNRVQHALRAFTPKDQKAVKAAAQTMRANPTFDTEKAIQELGTGEALISFLDAKGSPSVVERAMVIAPCSRMGPVTEDERNGLINHSPVYGKYEDDVDRESAYEMLQKGFQASIEQQNNTPAKGKEVAVDDGILGGLKDILFGTTGPRGGKKDGVVQTMAKSAARQVTNQIVRGMLGSLLGGRRR
>NZ_CP053251.1|WP_001304655.1|1229442_1230441_-|DNA-binding-transcriptional-regulator-IdnR
MRNHRISLQDIATLAGVTKMTVSRYIRSPKKVAKETGERIAKIMEEINYIPNRAPGMLLNAQSYTLGILIPSFQNQLFADILAGIESVTSVHNYQTLIANYNYDRDSEEESVINLLSYNIDGIILSEKYHTIRTVKFLRSATIPVVELMDVQGERLDMEVGFDNRQAAFDMVCTMLDKRVRRKILYLGSKDDTRDEQRYQGYCDAMMLHNLSPLRMNPRAISSIHLGMQLMRDALSANPDLDGVFCTNDDIAMGALLLCRERNLAVPEQISIAGFHGLEIGRQMIPSLASVITPRFDIGRMAAQMLLSKIKNNDHNHNTVDLGYQIYHGNTL
>NZ_CP053251.1|WP_001128336.1|1230507_1231827_-|gnt-II-system-L-idonate-transporter
MPLIIIAAGVALLLILMIGFKVNGFIALVLVAAVVGFAEGMDAQAVLHSIQNGIGSTLGGLAMILGFGAMLGKLISDTGAAQRIATTLIATFGKKRVQWALVITGLVVGLAMFFEVGFVLLLPLVFTIVASSGLPLLYVGVPMVAALSVTHCFLPPHPGPTAIATIFEANLGTTLLYGFIITIPTVIVAGPLFSKLLTRFEKAPPEGLFNPHLFSEEEMPSFWNSIFAAVIPVILMAIAAVCEITLPKTNTVRLFFEFVGNPAVALFIAIVIAIFTLGRRNGRTIEQIMDIIGDSIGAIAMIVFIIAGGGAFKQVLVDSGVGQYISHLMTGTTLSPLLMCWTVAALLRIALGSATVAAITTAGVVLPIINVTHADPALMVLATGAGSVIASHVNDPGFWLFKGYFNLTVGETLRTWTVMETLISIMGLLGVLAINAVLH
>NZ_CP053251.1|WP_000998695.1|1231891_1232656_-|gluconate-5-dehydrogenase
MNDLFSLAGKNILITGSAQGIGFLLATGLGKYGAQIIINDITAERAELAVEKLHQEGIQAVAAPFNVTHKHEIDAAVEHIEKDIGPIDVLVNNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVTRHMVERKAGKVINICSMQSELGRDTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVEDEAFTAWLCKRTPAARWGDPQELIGAAVFLSSKASDFVNGHLLFVDGGMLVAV
>NZ_CP053251.1|WP_001197423.1|1232679_1233711_-|L-idonate-5-dehydrogenase
MQVKTQSCVVAGKKTVAVTEQTIDWNNNGTLVQITRGGICGSDLHYYQEGKVGNFMIKAPMVLGHEVIGKVIHSDSSKLHEGQTVAINPSKPCGHCKYCIEHNENQCTEMRFFGSAMYFPHVDGGFTRYKMVETSQCVPYPAKADEKVMAFAEPLAVAIHAAHQAGELQGKRVFISGVGPIGCLIVSAVKTLGAAEIVCADVSPRSLSLGKEMGADVLVNPQNDDMDHWKAEKGYFDVSFEVSGHPSSVNTCLEVTRARGVMVQVGMGGAMAEFPMMTLIGKEISLKGSFRFTSEFNTAVSWLANGVINPLPLLSAEYPFTDLEEALRFAGDKTQAAKVQLVF
>NZ_CP053251.1|WP_000896738.1|1233927_1234491_+|gluconokinase
MAGESFILMGVSGSGKTLIGSKVAALLSAKFIDGDDLHPAKNIDKMSQGIPLSDEDRLPWLERLNDASYSLYKKNETGFIVCSSLKKQYRDILRKGSPHVHFLWLDGDYETILARMQRRAGHFMPVALLKSQFEALERPQADEQDIVRIDINHDIANVTEQCRQAVLAIRQNRICAKEGSASDQRCE
>NZ_CP053251.1|WP_001350789.1|1234494_1235514_-|NADPH-dependent-aldehyde-reductase-Ahr
MSMIKSYAAKEAGGELEVYEYDPGELRPQDVEVQVDYCGICHSDLSMIDNEWGFSQYPLVAGHEVIGRVVALGSAAQDKGLQVGQRVGIGWTARSCGHCDACISGNQINCEQGAVPTIMNRGGFAEKLRADWQWVIPLPENIDIESAGPLLCGGITVFKPLLMHHITATSRVGVIGIGGLGHIAIKLLHAMGCEVTAFSSNPAKEQEVLAMGADKVVNSRDPQALKTLAGQFDLIINTVNVSLDWQPYFEALTYGGNFHTVGAVLTPLPVPAFTLIAGDRSVSGSATGTPYELRKLMRFAARSKVAPTTELFPMSKINDAIQHVRDGKARYRVVLKADF

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Crispr_ID: NZ_CP053251_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053251_3

2363962-2364109

Orphan

I-F

Consensus_repeat	Method
GTTCACTGCCGTACAGGCAGCTTAGAAA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP053251_3

>merge|NZ_CP053251|3|2363962-2364109|CRISPRCasFinder
GTTCACTGCCGTACAGGCAGCTTAGAAAGCACACGTCGAGCTGGTGGGGATTAATGCTGGGTTCACTGCCGTACAGGCAGCTTAGAAATTGCCGCGGATCCTGTCTGCCAATAATGACAAGTTCACTGCCGTACAGGCAGATAAAATG

>NZ_CP053251|3|3|2363962-2364109|CRISPRCasFinder
GTTCACTGCCGTACAGGCAGCTTAGAAA	GCACACGTCGAGCTGGTGGGGATTAATGCTGG
GTTCACTGCCGTACAGGCAGCTTAGAAA	TTGCCGCGGATCCTGTCTGCCAATAATGACAA
GTTCACTGCCGTACAGGCAGATAAAATG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053251.1\|WP_000458842.1\|2350544_2352197_-\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391
NZ_CP053251.1\|WP_001675097.1\|2371488_2375478_+\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|236669
NZ_CP053251.1\|WP_001295343.1\|2375636_2376248_+\|outer-membrane-lipoprotein-chaperone-LolA	unknown	unknown	gnl\|CDD\|129638
NZ_CP053251.1\|WP_001043558.1\|2367461_2369228_-\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	unknown	unknown	gnl\|CDD\|236870
NZ_CP053251.1\|WP_000537432.1\|2369350_2370316_-\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
NZ_CP053251.1\|WP_001298299.1\|2353560_2354256_-\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453
NZ_CP053251.1\|WP_000599809.1\|2354681_2356340_+\|ATP-dependent-endonuclease	unknown	unknown	gnl\|CDD\|226121
NZ_CP053251.1\|WP_000228473.1\|2370859_2371354_+\|leucine-responsive-transcriptional-regulator-Lrp	unknown	unknown	gnl\|CDD\|183009
NZ_CP053251.1\|WP_001538509.1\|2361472_2363749_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NZ_CP053251.1\|WP_171274452.1\|2358555_2360502_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	unknown	unknown	gnl\|CDD\|182528
NZ_CP053251.1\|WP_000067755.1\|2376258_2377602_+\|replication-associated-recombination-protein-RarA	unknown	unknown	gnl\|CDD\|237355
NZ_CP053251.1\|WP_000410785.1\|2360574_2360799_-\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|77494
NZ_CP053251.1\|WP_001538508.1\|2361121_2361442_+\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_CP053251.1\|WP_001241673.1\|2364993_2365698_-\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
NZ_CP053251.1\|WP_001040187.1\|2364490_2364709_-\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
NZ_CP053251.1\|WP_000491135.1\|2352340_2353240_-\|L-lysine-exporter-LysO	unknown	unknown	gnl\|CDD\|225287
NZ_CP053251.1\|WP_001202199.1\|2365739_2367461_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl\|CDD\|236865
NZ_CP053251.1\|WP_000886683.1\|2377692_2378985_+\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
NZ_CP053251.1\|WP_001351020.1\|2356336_2357293_-\|DUF535-domain-containing-protein	unknown	unknown	gnl\|CDD\|225537
NZ_CP053251.1\|WP_000746478.1\|2357443_2358559_+\|macrolide-transporter-subunit-MacA	unknown	unknown	gnl\|CDD\|183211

Protein	Function_ID	Function_description	E-value
NZ_CP053251.1\|WP_000458842.1\|2350544_2352197_-\|hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
NZ_CP053251.1\|WP_001675097.1\|2371488_2375478_+\|DNA-translocase-FtsK	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
NZ_CP053251.1\|WP_001295343.1\|2375636_2376248_+\|outer-membrane-lipoprotein-chaperone-LolA	gnl\|CDD\|129638	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself. [Protein fate, Protein and peptide secretion and trafficking].	1.48786e-125
NZ_CP053251.1\|WP_001043558.1\|2367461_2369228_-\|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP053251.1\|WP_000537432.1\|2369350_2370316_-\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0
NZ_CP053251.1\|WP_001298299.1\|2353560_2354256_-\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	2.04944e-144
NZ_CP053251.1\|WP_000599809.1\|2354681_2356340_+\|ATP-dependent-endonuclease	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
NZ_CP053251.1\|WP_000228473.1\|2370859_2371354_+\|leucine-responsive-transcriptional-regulator-Lrp	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	5.32926e-117
NZ_CP053251.1\|WP_001538509.1\|2361472_2363749_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NZ_CP053251.1\|WP_171274452.1\|2358555_2360502_+\|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
NZ_CP053251.1\|WP_000067755.1\|2376258_2377602_+\|replication-associated-recombination-protein-RarA	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
NZ_CP053251.1\|WP_000410785.1\|2360574_2360799_-\|cold-shock-like-protein-CspD	gnl\|CDD\|77494	PRK09937, PRK09937, cold shock-like protein CspD.	1.48016e-47
NZ_CP053251.1\|WP_001538508.1\|2361121_2361442_+\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	1.16092e-48
NZ_CP053251.1\|WP_001241673.1\|2364993_2365698_-\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	1.60016e-139
NZ_CP053251.1\|WP_001040187.1\|2364490_2364709_-\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	8.41354e-49
NZ_CP053251.1\|WP_000491135.1\|2352340_2353240_-\|L-lysine-exporter-LysO	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	1.20561e-117
NZ_CP053251.1\|WP_001202199.1\|2365739_2367461_-\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
NZ_CP053251.1\|WP_000886683.1\|2377692_2378985_+\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NZ_CP053251.1\|WP_001351020.1\|2356336_2357293_-\|DUF535-domain-containing-protein	gnl\|CDD\|225537	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown].	3.43529e-131
NZ_CP053251.1\|WP_000746478.1\|2357443_2358559_+\|macrolide-transporter-subunit-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0

>NZ_CP053251.1|WP_001538509.1|2361472_2363749_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPNSEEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTLYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNELTYGFQSAQKHKAEAAH
>NZ_CP053251.1|WP_001538508.1|2361121_2361442_+|ATP-dependent-Clp-protease-adapter-ClpS
MGKTNDWLDFDQLAEEKVRDALKPPSIYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA
>NZ_CP053251.1|WP_000410785.1|2360574_2360799_-|cold-shock-like-protein-CspD
MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNHASVIVPVEVEAAVA
>NZ_CP053251.1|WP_171274452.1|2358555_2360502_+|macrolide-ABC-transporter-ATP-binding-protein/permease-MacB
MTPLLELKDIRRSYPAGDEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKATSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAEQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRTEYYPAQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAVEKVNATGGTEPVVNTASGWRQFVSGFNEALTMAWRALAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRSIGTNIIDVYPGKDFGDDDPQYQQALKYDDLIAIQKQPWVASATPAVSQNLRLRYNNVDVAASANGVSGDYFNVYGMTFSEGNTFNQEQLNGRAQVVVLDSNTRRQLFPHKADVVGEVILVGNMPARVIGVAEEKQSMFGSSKVLRVWLPYSTMSGRVMGQSWLNSITVRVKEGFDSAEAEQQLTRLLSLRHGKKDFFTWNMDGVLKTVEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTRVIGIRMAVGARASDVLQQFLIEAVLVCLVGGALGITLSLLIAFTLQLFLPGWEIGFSPLALLLAFLCSTVTGILFGWLPARNAARLDPVDALARE
>NZ_CP053251.1|WP_000746478.1|2357443_2358559_+|macrolide-transporter-subunit-MacA
MKKRKTVKKRYVIAMVIVIAGLITLWRILNAPVPTYQTLIVRPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTPEKINDAIFYYARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEVVIGEAKPGAAQ
>NZ_CP053251.1|WP_001351020.1|2356336_2357293_-|DUF535-domain-containing-protein
MNMSQLTERTFTPSESLSSLSLFLSLARGQCRPGKFWHRRSFRQKFLLRSLIMPRLSVEWMNELSHWPNLNVLLTRQPRLPVRLHRPYLAANLSRKQLLEALRYHYALLRGCMSAEEFSLYLNTPGLQLAKLEGKNGEQFTLELTMMISMDKEGDSTILFRNSEGIPLAELTFTLCEYQGKRTMFIGGLQGAKWEIPHQEIQNATKACHGLFPKRLVMEAACLFAQRLQVEQIIAVSNETHIYRSLRYRDKEGKIHADYNAFWESVGGVCDAERHYRLPAQIARKEIAEIASKKRAEYRRRYEMLDAIQPQMATMFCS
>NZ_CP053251.1|WP_000599809.1|2354681_2356340_+|ATP-dependent-endonuclease
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPESDLYHFERDDFWFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLEACWTPCTDGYHRIFYRLEGESAEDGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRLRDARFMRRIRNGTVPNVPNVEVTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRASNEQRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQAKGTLRLDKDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVEHVCRLVRESSRVAAWRLGPSGLSTEDSRRISFHIRFNRPSSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREAEREHLTALPALDMEHFMYRQGFSDVFHRVAQIPENVPMNLRKVISKAIHRSSKPDLAIEVAMEAGRRGVDSVPTLLKKMFSRVLWLARGRAD
>NZ_CP053251.1|WP_001298299.1|2353560_2354256_-|aquaporin-Z
MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKRD
>NZ_CP053251.1|WP_000491135.1|2352340_2353240_-|L-lysine-exporter-LysO
MFSGLLIILVPLIVGYLIPLRQKAALRVINQLLSWMVYLILFFMGISLAFLDNLASNLLAILHYSAVSITVILLCNIAALMWLERGLPWRNHHHQEKLPSRIAMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQIVLNRRGMIVAVVVVASSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGFILSLLVPILIAFFSA
>NZ_CP053251.1|WP_000458842.1|2350544_2352197_-|hydroxylamine-reductase
MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIATLQGLSAWAVKAREYGIINHDVDSFAPRAFFSTLTNVNFDSPRIVGYAREAIALREALKAQCLAVDANARVDNPMADLQLMSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPADMNALLECSMEIGQMNFKVMSILDAGETGKYGHPTPTQVNVKATAGKCILISGHDLKDLYNLLEQTEGTGVNVYTHGEMLPAHGYPELRKFKHLVGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGAYDDRIWTRSIVGWPGVRHLDGEDFSAVIAQAQQMAGFPYSEIPHLITVGFGRQTLLGAADTLIDLVSREKLRHIFLLGGCDGARGERHYFTDFATSVPDDCLILTLACGKYRFNKLEFGDIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVKNIVTGPTAPGFLTPDLLAVLNEKFGLRSITTVEEDMKQLLSA
>NZ_CP053251.1|WP_001040187.1|2364490_2364709_-|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>NZ_CP053251.1|WP_001241673.1|2364993_2365698_-|leucyl/phenylalanyl-tRNA--protein-transferase
MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGCASDREEGTWITRGVVEAYHRLHELGHAHSIEVWREDELVGGMYGVAQGTLFCGESMFSRMENASKTALLVFCDEFIRHGGKLIDCQVLNDHTASLGACEIPRRDYLNYLNQMRLGRLPNNFWVPRCLFSPQE
>NZ_CP053251.1|WP_001202199.1|2365739_2367461_-|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MRALLPYLALYKRHKWMLSLGIVLAIVTLLASIGLLTLSGWFLSASAVAGVAGLYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARYRQGELLNRVVADVDTLDHLYLRVISPLVGAFVVIMVVTIGLSFLDFTLAFTLGGIMLLTLFLMPPLFYRAGKSTGQNLTHLRGQYRQQLTAWLQGQAELTIFGASDRYRTQLENTEIQWLEAQRRQSELTALSQAIMLLIGALAVILMLWMASGGVGGNAQPGALIALFVFCALAAFEALAPVTGAFQHLGQVIASAVRITDLTDQKPEVTFPDTQTRVADRVSLTLRDVQFTYPEQSQQALKGIYLQVNAGEHIAILGRTGCGKSTLLQLLTRAWDPQQGEILLNDSPIASLNEAALRQTISVVPQRVHLFSATLRDNLLLASPGSSDEALAEILRRVGLEKLLEDAGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLVLLDEPTEGLDATTESQILELLAEMMCEKTVLMVTHRLRGLSRFQQIIVMDNGQIIEQGTHAELLTRQGRYYQFKQGL
>NZ_CP053251.1|WP_001043558.1|2367461_2369228_-|cysteine/glutathione-ABC-transporter-permease/ATP-binding-protein-CydD
MNKSRQKELTRWLKQQSVISQRWLNISRLLGFVSGILIIAQAWFMARILQHMIMENIPREALLLPFTLLFLTFVLRAWVVWLRERVGYHAGQHIRFAIRRQVLDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVSVPLLIVVAIFPSNWAAALILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIFGRGEAEIESIRSASEDFRQRTMEVLRLAFLSSGILEFFTSLSIALVAIYFGFSYLGELDFGHYDTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLAHPQRGEAELASTDPVTIEAEDLFITSPEGKTLAGPLNFTLPAGQRAVLVGRSGSGKSSLLNALSGFLSYQGSLRINGIELRDLSPESWRKHLSWVGQNPQLPAATLRDNVLLARPDASEQELQTALDNAWVSEFLPLLPQGIDTPVGDQAARLSVGQAQRVAVARALLNPCSLLLLDEPAASLDAHSEQRVMEALNAASLRQTTLMVTHQLEDLADWDVIWVMQDGQIIEQGRYAELSVAGGPFATLLAHRQEEI
>NZ_CP053251.1|WP_000537432.1|2369350_2370316_-|thioredoxin-disulfide-reductase
MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADAK
>NZ_CP053251.1|WP_000228473.1|2370859_2371354_+|leucine-responsive-transcriptional-regulator-Lrp
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>NZ_CP053251.1|WP_001675097.1|2371488_2375478_+|DNA-translocase-FtsK
MSQEYTEDKEVTLTKLSSGRRLLEALLILIVLFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQSSDEYIDYFAVSLRIIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHSSGGTIALLCVWAAGLTLFTGWSWVTIAEKLGGWILNILTFASNRTRRDDTWVDEDEYEDDEEYEDENHGKQHESRRARILRGALARRKRLAEKFINPMGRQTDAALFSGKRMDDEEEITYTARGVAADPDDVLFSGNRATQPEYDEYDPLLNGAPITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPTQPTVAWQPVPGPQTGEPVIAPAPEGYPHQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPVQQPYYAPAAEQPVQQPYYAPAPEQPVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPTRPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSGGPRPQVKEGIGPQLPRPKRIRVPTRRELASYGIKLPSQRAAEEKAREAQRNQYDSGDQYNDDEIDAMQQDELARQFAQTQQQRYGEQYQHDVPVNTEDADAAAEAELARQFAQTQQQRYSGEQPAGANPFSLDDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAQQPQYQQPQQPVAPQQQYQQPQQPVAQQPQYQQPQQPVAPQPHDTLLHPLLMRNGDSRPLHKPTTPLPSLDLLTPPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRDNPSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLGMGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGVGGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPPPFD
>NZ_CP053251.1|WP_001295343.1|2375636_2376248_+|outer-membrane-lipoprotein-chaperone-LolA
MKKIAITCALLSSLVASSVWADAASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWLKDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNGNLKQFTINVGRDGTIHQFSAVEQDDQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRK
>NZ_CP053251.1|WP_000067755.1|2376258_2377602_+|replication-associated-recombination-protein-RarA
MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEANAYAAGEVYFPPEIAQTRYYFPTNRGLEGKIGEKLAWLAEQDQNSPIKRYR
>NZ_CP053251.1|WP_000886683.1|2377692_2378985_+|serine--tRNA-ligase
MLDPNLLRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDAAKAELDALQAEIRDIALTIPNLPADEVPVGKDENDNVEVSRWGTPREFDFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEVPLTNLVRGEIIDEDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVRPEDSMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSGLAVGRTLVAVMENYQQADGRIEVPEVLRPYMNGLEYIG

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Crispr_ID: NZ_CP053251_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053251_4

3850415-3850541

Orphan

Consensus_repeat	Method
TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP053251_4

>merge|NZ_CP053251|4|3850415-3850541|CRISPRCasFinder
TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGCTCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGATTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC

>NZ_CP053251|4|4|3850415-3850541|CRISPRCasFinder
TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC	TCCGGGTGCCGGATGCAGCGTGAACGCCTTATCCGGCCTACGGCTCGGA
TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053251.1\|WP_001220077.1\|3843630_3847383_-\|AIDA-I-family-autotransporter-adhesin-YfaL/EhaC	unknown	unknown	gnl\|CDD\|182059
NZ_CP053251.1\|WP_001539144.1\|3831361_3833011_-\|DUF2300-domain-containing-protein	unknown	unknown	gnl\|CDD\|227732
NZ_CP053251.1\|WP_000012324.1\|3838169_3839858_-\|DUF2138-domain-containing-protein	unknown	unknown	gnl\|CDD\|227030
NZ_CP053251.1\|WP_001773999.1\|3853148_3854225_-\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|236859
NZ_CP053251.1\|WP_000135040.1\|3851727_3851982_+\|ferredoxin-like-diferric-tyrosyl-radical-cofactor-maintenance-protein-YfaE	unknown	unknown	gnl\|CDD\|182668
NZ_CP053251.1\|WP_171274489.1\|3855860_3857489_+\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	unknown	unknown	gnl\|CDD\|236847
NZ_CP053251.1\|WP_001075164.1\|3848078_3850364_+\|ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|181649
NZ_CP053251.1\|WP_001539145.1\|3833011_3837406_-\|alpha-2-macroglobulin-family-protein	unknown	unknown	gnl\|CDD\|225248
NZ_CP053251.1\|WP_001225879.1\|3830580_3831357_-\|YfaP-family-protein	unknown	unknown	gnl\|CDD\|227021
NZ_CP053251.1\|WP_000948731.1\|3854229_3855588_-\|glycerol-3-phosphate-transporter	unknown	unknown	gnl\|CDD\|236889
NZ_CP053251.1\|WP_000580278.1\|3827968_3829291_+\|TIGR00366-family-protein	unknown	unknown	gnl\|CDD\|280776
NZ_CP053251.1\|WP_000990765.1\|3842780_3843503_+\|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase	unknown	unknown	gnl\|CDD\|235350
NZ_CP053251.1\|WP_000150331.1\|3861041_3861263_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182167
NZ_CP053251.1\|WP_001539153.1\|3860117_3861029_+\|ISNCY-family-transposase	unknown	unknown	gnl\|CDD\|182167
NZ_CP053251.1\|WP_001773998.1\|3840006_3842634_-\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A	unknown	unknown	gnl\|CDD\|235502
NZ_CP053251.1\|WP_000301050.1\|3852035_3852686_-\|lipopolysaccharide-kinase-InaA	unknown	unknown	gnl\|CDD\|182136
NZ_CP053251.1\|WP_171274488.1\|3837549_3838173_-\|DUF1175-domain-containing-protein	unknown	unknown	gnl\|CDD\|225774
NZ_CP053251.1\|WP_000332037.1\|3850597_3851728_+\|ribonucleotide-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|181647
NZ_CP053251.1\|WP_001774000.1\|3857478_3858738_+\|glycerol-3-phosphate-dehydrogenase-subunit-GlpB	unknown	unknown	gnl\|CDD\|225617
NZ_CP053251.1\|WP_001000377.1\|3858734_3859925_+\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C	unknown	unknown	gnl\|CDD\|132422

Protein	Function_ID	Function_description	E-value
NZ_CP053251.1\|WP_001220077.1\|3843630_3847383_-\|AIDA-I-family-autotransporter-adhesin-YfaL/EhaC	gnl\|CDD\|182059	PRK09752, PRK09752, AIDA-I family autotransporter YfaL.	0
NZ_CP053251.1\|WP_001539144.1\|3831361_3833011_-\|DUF2300-domain-containing-protein	gnl\|CDD\|227732	COG5445, COG5445, Predicted secreted protein [Function unknown].	2.83293e-126
NZ_CP053251.1\|WP_000012324.1\|3838169_3839858_-\|DUF2138-domain-containing-protein	gnl\|CDD\|227030	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP053251.1\|WP_001773999.1\|3853148_3854225_-\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|236859	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional.	0
NZ_CP053251.1\|WP_000135040.1\|3851727_3851982_+\|ferredoxin-like-diferric-tyrosyl-radical-cofactor-maintenance-protein-YfaE	gnl\|CDD\|182668	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein.	2.72138e-53
NZ_CP053251.1\|WP_171274489.1\|3855860_3857489_+\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	gnl\|CDD\|236847	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A.	0
NZ_CP053251.1\|WP_001075164.1\|3848078_3850364_+\|ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|181649	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha.	0
NZ_CP053251.1\|WP_001539145.1\|3833011_3837406_-\|alpha-2-macroglobulin-family-protein	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	0
NZ_CP053251.1\|WP_001225879.1\|3830580_3831357_-\|YfaP-family-protein	gnl\|CDD\|227021	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown].	1.05627e-152
NZ_CP053251.1\|WP_000948731.1\|3854229_3855588_-\|glycerol-3-phosphate-transporter	gnl\|CDD\|236889	PRK11273, glpT, glycerol-3-phosphate transporter.	0
NZ_CP053251.1\|WP_000580278.1\|3827968_3829291_+\|TIGR00366-family-protein	gnl\|CDD\|280776	pfam02667, SCFA_trans, Short chain fatty acid transporter. This family consists of two sequences annotated as short chain fatty acid transporters, however, there are no references giving details of experimental characterization of this function.	0
NZ_CP053251.1\|WP_000990765.1\|3842780_3843503_+\|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase	gnl\|CDD\|235350	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG.	1.65303e-171
NZ_CP053251.1\|WP_000150331.1\|3861041_3861263_+\|hypothetical-protein	gnl\|CDD\|182167	PRK09956, PRK09956, ISNCY family transposase.	1.13284e-32
NZ_CP053251.1\|WP_001539153.1\|3860117_3861029_+\|ISNCY-family-transposase	gnl\|CDD\|182167	PRK09956, PRK09956, ISNCY family transposase.	0
NZ_CP053251.1\|WP_001773998.1\|3840006_3842634_-\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
NZ_CP053251.1\|WP_000301050.1\|3852035_3852686_-\|lipopolysaccharide-kinase-InaA	gnl\|CDD\|182136	PRK09902, PRK09902, lipopolysaccharide kinase InaA.	2.86156e-158
NZ_CP053251.1\|WP_171274488.1\|3837549_3838173_-\|DUF1175-domain-containing-protein	gnl\|CDD\|225774	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown].	7.93421e-139
NZ_CP053251.1\|WP_000332037.1\|3850597_3851728_+\|ribonucleotide-diphosphate-reductase-subunit-beta	gnl\|CDD\|181647	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed.	0
NZ_CP053251.1\|WP_001774000.1\|3857478_3858738_+\|glycerol-3-phosphate-dehydrogenase-subunit-GlpB	gnl\|CDD\|225617	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism].	0
NZ_CP053251.1\|WP_001000377.1\|3858734_3859925_+\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C	gnl\|CDD\|132422	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species. [Energy metabolism, Anaerobic].	0

>NZ_CP053251.1|WP_001075164.1|3848078_3850364_+|ribonucleoside-diphosphate-reductase-subunit-alpha
MNQNLLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPALYDHVVKMVEMGKYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAINNLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDGAEDAQDDLVPSIQDDGCESGACKI
>NZ_CP053251.1|WP_001220077.1|3843630_3847383_-|AIDA-I-family-autotransporter-adhesin-YfaL/EhaC
MRIIFLRKEYLSLLPSMIASLFSANGVAAVTDSCQGYDVKASCQASRQSLSGITQDWSIADGQWLVFSDMTNNASGGAVFLQQGAEFSLLPENETGMTLFANNTVTGEYNNGGAIFAKENSTLNLTDVIFSGNVAGGYGGAIYSSGTNDTGAVDLRVTNAMFRNNIANDGKGGAIYTINNDVYLSDVIFDNNQAYTSTSYSDGDGGAIDVTDNNSDSKHPSGYTIVNNTAFTNNTAEGYGGAIYTNSVTAPYLIDISVDDSYSQNGGVLVDENNSAAGYGDGPSSAAGGFMYLGLSEVTFDIADGKTLVIGNTENDGAVDSIAGTGLITKTGSGDLVLNADNNDFTGEMQIENGEVTLGRSNSLMNVGDTHCQDDPQDCYGLTIGSIDQYQNQAELNVGSTQQTFVHALTGFQNGTLNIDAGGNVTVNQGSFAGIIEGAGQLTIAQNGSYVLAGAQSMALTGDIVVDDGAVLSLEGDAADLTALQDDPQSIVLNGGVLDLSDFSTWQSGTSYNDGLEVSGSSGTVIGSQDVVDLAGGDNLHIGGDGKDGVYVVVDASDGQVSLANNNSYLGTTQIASGTLMVSDNSQLGDTHYNRQVIFTDKQQESVMEITSDVDTRSDAAGHGRDIEMRADGEVAVDAGVDTQWGALMADSSGQHQDEGSTLTKTGAGTLELTASGTTQSAVRVEEGTLKGDVADILPYASSLWVGDGATFVTGADQDIQSIDAISSGTIDISDGTVLRLTGQDTSVALNASLFNGDGTLVNATDGVTLTGELNTNLETDSLTYLSNVTVNGNLTNTSGAVSLQNGVAGDTLTVNGDYTGGGTLLLDSELNGDDSVSDQLVMNGNTAGNTTVVVNSITGIGEPTSTGIKVVDFAADPTQFQNNAQFSLAGSGYVNMGAYDYTLVEDNNDWYLRSQEVTPPSPPDPDPTPDPDPTPDPDPTPDPEPTPAYQPVLNAKVGGYLNNLRAANQAFMMERRDHAGGDGQTLNLRVIGGDYHYTAAGQLAQHEDTSTVQLSGDLFSGRWGTDGEWMLGIVGGYSDNQGDSRSNMTGTRADNQNHGYAVGLTSSWFQHGNQKQGAWLDSWLQYAWFSNDVSEQEDGTDHYHSSGIIASLEAGYQWLPGRGVVIEPQAQVIYQGVQQDDFTAANRARVSQSQGDDIQTRLGLHSEWRTAVHVIPTLDLNYYHDPHSTEIEEDGSTISDDAVKQRGEIKVGVTGNISQRVSLRGSVAWQKGSDDFAQTAGFLSMTVKW
>NZ_CP053251.1|WP_000990765.1|3842780_3843503_+|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase
MNAEKSPVNHNVDHEEIAKFEAVASRWWDLEGEFKPLHRINPLRLGYIAERAGGLFGKKVLDVGCGGGILAESMAREGATVTGLDMGFEPLQVAKLHALESGIQVDYVQETVEEHAAKHAGQYDVVTCMEMLEHVPDPQSVVRACAQLVKPGGDVFFSTLNRNGKSWLMAVVGAEYILRMVPKGTHDVKKFIKPAELLGWVDQTSLKERHITGLHYNPITNTFKLGPGVDVNYMLHTQNK
>NZ_CP053251.1|WP_001773998.1|3840006_3842634_-|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A
MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTSEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEPEEE
>NZ_CP053251.1|WP_000012324.1|3838169_3839858_-|DUF2138-domain-containing-protein
MSGEKKAKGWRFYGLVGFGAIALLSAGVWALQYSGSGPEKTLSPLVVHNNLQIDLNEPDLFLDSDSLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIEGSIRRIVYEHDLTLKDKLFSSLLDQPAQAALWHDKQGHLSHYMVLIQRSGLSKLLEPLLFAATSDSQLSKTEISSIKINSETIPVYQLRYNGNNVLMFATYQDKILAFSSSDMLFKDDQQDTEATAIASDLLSGKKRWETRFGLEARTAEKTPVRQRIVVSARLLGFGYQRLMPSFAGVRFEMGNDGWHSFLALNDESASVDASFDFTQVWNSMPAGASFCVAVPYSHGIAEEMLSHISQENDKLNGALDGGAGLCWYEDSKLQTPLFVGQFDGTAEQAQLPGKLFTQNIGAHESKAPEGVLPVSQTQQGEAQIWRREVSSRYGQYPKAQAAQPDQLMSDYFFRVSLAMQNKTLLFSLDDTLVNNALQALNKTRPAMVDVIPTDGIVPLYINPQGMAKLLRNETLTSLPKNLEPVFYNAAQTLLMPKLDALSQQPRYVMKLAQMEPGAAWQWLPITWQPL
>NZ_CP053251.1|WP_171274488.1|3837549_3838173_-|DUF1175-domain-containing-protein
MRHGLLVLICWLYCVVAHSEMLNVEQSGLFRAWFVRIAQEQLRQGPSPRWYQQDCAGLVRFAANEALKVHDSKWLKSNGLSNQYLPPEMTLTPEQRQLAQNWNQGNGKTGPYVTAINLIQYNSQFIGEDINQALPGDMIFFDQGDAQHLMVWMGRYIIYHTGSATKTDNGMRAVSLQQLMTWKDTRWIPNDSNPNFIGIYRLNFLAR
>NZ_CP053251.1|WP_001539145.1|3833011_3837406_-|alpha-2-macroglobulin-family-protein
MRLEAPGRDYRRYQMEEYGGVDVRLYRIPDPMAFLRQQKNLHRIVVQPQYLGDGLNNTLTWLWDNWYGKSRRVMQRTFSSQSRQNVTQALPELQLGNAIIKPSRYVQNNQFSPLKKYPLVEQFRYPLWQAKPVEPQQGVKLEGASSNFISPQPGNIYIPLGKQEPGLYLVEAMVGGYRATTVVFVSDTVALSKVSGNELLVWTAGKKQGEAKPGSEILWTDGLGVMTRGVTDGSGTLQLQHISPERSYILGKDAEGGVFVSENFFYESEIYNTRLYIFTDRPLYRAGDRVDVKVMGREFHDPLHSSPIVSAPAKLSVLDANGSLLQTVNVTLDARNGGQGSFRLPENAVAGGYELRLAYRKQVYSSSFRVANYIKPHFEIGLALDKKEFKTGEAVSGKLQLLYPDGEPVKNARVQLSLRAQQLSMVGNDLRYAGRFPVSLEGSETVSDDNGHVALNLPAADKPSRYLLTVSASDGAAYRVTTTKEILIERGLAHYSLSTAAQYSNSGELVVFRYAALESSKQVPVTYEWLRLEDRTSHSGELPSGGKSFTVNFAKPGNYNLTLRDKDGLILAGLSHAVSGKGSTSHTGTVDIVADKTLYQPGETAKMLITFPEPIDEALLTLERDRVEQKSLLSHPANWLTLQRLNDTQYEARVPVSNSFAPNITFSVLYTRNGQYSFQNAGIKVAVPQLDIRVKTDKTHYQPGELVNVELTSSLKGKPVSAQLTVGVVDEMIYALQPEIAPNIGKFFYPLGRNNVRTSSSLSFISYDQALSSEPVAPGATNRSERRVKMLERPRREEVDTAAWMPSLTTDKQGKAYFTFLMPDSLTRWRITARGMNGDGLVGQGRAYLRSEKSLYMKWSMPTVYRMGDKPAAGLFIFSQQDNEPVALVTKFAGAEMRQTLTLHKGANYISLTQNIQQSGLLSAELQQNGQVQDSISTKLSFVDNSWPVEQQKNVMLGGGDNALTLPEQASNIRLQSSETPQEIFRNNLDALVDEPWGGVINTGSRLIPLSLAWRSLADHQSAAANDIRQMIQDNRLRLMQLAGPGARFTWWGEDGNGDAFLTAWAWYADWQASQALGVTQQPEYWQHMLDSYAEQADNMPLLHRALVLAWAQEMNLPCKTLLKGLDEAIARRGTKTKDFSEVDTSDINDSMILDTPESPLADAVANVLTMTLLKKAQLKSTVMPQVQQYAWDKAANSNQPLAHTVVLLNSGGDATQAAAILSGLTAEQSTIERALAMNWLAKYMATMPPVVLPAPAGAWAKHKLTGGGEDWRWVGQGVPDILSFGDELSPQNVQVRWREPAKTAQQSNIPVTVERQLYRLIPGEEEMSFTLQPVTSNEIDSDALYLDEITLTSEQDAVLRYGQVEVPLPPGADVERTTWGISVNKPNAGKQQGQLLEKARNEMGELAYMVPVKELTGTVTFRHLLRFSQKGQFVLPPARYVRSYAPAQQSVAAGSEWTGMQVK
>NZ_CP053251.1|WP_001539144.1|3831361_3833011_-|DUF2300-domain-containing-protein
MNWRRIVWLLALVTLPTLAEETPLQLVLRGAQHDQLYQMSSSGVTKVSALPDTLTTPLGSLWKLYVYAWLEDTHQPEQPYQCRGNSPEEVYCCQAGESITRDTALVRSCGLYFAPQRLHIGADMWGQYWQQRQAPAWLASLPTLKPETSVTVKSLLDSLATLPAQNKAQEVLLDVVLDEAKIGVASMLGSRVRVKTWSWFADDKQQIRQGGFAGWLTDGTPLWVTGSGTSKTVLTRYATVLNRVLPVPTQVASGQCVEVELFARYPLKKVTEEKSTTAVKPGVLNGRYRVTFANGNHMTFVSHGETTLLTVKGKLKLQSHLDREEYVARVLDREAKSTPPEAAKAMTVAIRTYLQQNADRDGDCLSIPDSSATQRVSASPATVGARTMTAWTQDLIYAGDPVHYHGSRVTEGTLSWRHATAQAGQGERYDQILAFAYPDNNLSRWGAPRSTCQLLPKAKAWLAKKMPQWRRILQGETGYNEPDVFAVCRLVSGFPYTDRQQKRLFIRNFFTLQDRLDLTHEYLHLAFDGYPTGLDENYIETLTRQLLMD
>NZ_CP053251.1|WP_001225879.1|3830580_3831357_-|YfaP-family-protein
MRKIFLPLLLVALSPVAHSEGVQEVEIDAPLSGWHPAEGEDASFSQTINYPASSVNMADDQNISAQIRGKIKNYAAAGKVQQGRLVVNGASMPQRIESDGSFARPYIFTEGSNSVQVISPDGQSRQKMQFYSTPGAGAIRARLRLVLSWDTDNTDLDLHVVTPDGEHAWYGNTVLKNSGALDMDVTTGYGPEIFAMPAPVHGRYQVYINYYGGRSETELTTAQLTLITDEGSVNEKQETFIVPMRNAGELTLVKSFDW
>NZ_CP053251.1|WP_000580278.1|3827968_3829291_+|TIGR00366-family-protein
MIGRISRFMTRFVSRWLPDPLIFAMLLTLLTFVIALWLTPQTPISMVKMWGDGFWNLLAFGMQMALIIVTGHALASSAPVKSLLRTAASAAKTPVQGVMLVTFFGSVACVINWGFGLVVGAMFAREVARRVPGSDYPLLIACAYIGFLTWGGGFSGSMPLLAATPGNPVEHIAGLIPVGDTLFSGFNIFITVALIVVMPFITRMMMPKPSDVVSIDPKLLMEEADFQKQLPKDAPPSERLEESRILTLIIGALGIAYLAMYFSEHGFNITINTVNLMFMIAGLLLHKTPMAYMRAISAAARSTAGILVQFPFYAGIQLMMEHSGLGGLITEFFINVANKDTFPVMTFFSSALINFAVPSGGGHWVIQGPFVMPAAQALGADLGKSVMAIAYGEQWMNMAQPFWALPALAIAGLGVRDIMGYCITALLFSGVIFVIGLTLF
>NZ_CP053251.1|WP_000332037.1|3850597_3851728_+|ribonucleotide-diphosphate-reductase-subunit-beta
MAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTDDLSNFQL
>NZ_CP053251.1|WP_000135040.1|3851727_3851982_+|ferredoxin-like-diferric-tyrosyl-radical-cofactor-maintenance-protein-YfaE
MARVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAKGDIEIEM
>NZ_CP053251.1|WP_000301050.1|3852035_3852686_-|lipopolysaccharide-kinase-InaA
MAVSAKYDEFNHWWATEGDWVEEPNYRRNGMSGVQCVERNGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALLVTEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMHSINRQHGCCYVRHIYVKTEGNAEAGFLDLEKSRRRLRRDKAINHDFRQLEKYLEPIPKADWEQVKAYYYAM
>NZ_CP053251.1|WP_001773999.1|3853148_3854225_-|glycerophosphodiester-phosphodiesterase
MKLTLKNLSMAIMMSTIVMGSSAMAADSNEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDNLVVLHDHYLDRVTDVADRFPDRARKDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRIKNELEPKMGMELNLVQLIAYTDWDETQQKQPDGSWVNYNYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLPEYTPDVNQLYDALYNKAGVNGLFTDFPDKAVKFLNKE
>NZ_CP053251.1|WP_000948731.1|3854229_3855588_-|glycerol-3-phosphate-transporter
MLSIFKPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQERNGG
>NZ_CP053251.1|WP_171274489.1|3855860_3857489_+|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A
MKTRDSQSSDVIIIGGGATGAGIARDCALRGLRVILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVEPTNGLFITLPEDDLSFQATFIRACEEAGINAEAIEPQQARIIEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGAVILTAHEVTGLIREGATVCGVRVRNHLTGEIQALHAPVVVNAAGIWGQHIAEYADLRIRMFPAKGSLLIMDHRINQHVINRCRKPSDADILVPGDTISLIGTTSLRIDYNEIDDNRVTAEEVDILLREGEKLAPVMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGGKLMTYRLMAEWATDAVCRKLGNTRPCTTADLALPGSQEPAEVTLRKVISLPAPLRGSAVYRHGDRTPAWLSEGRLHRSLVCECEAVTAGEVQYAVENLNVNSLLDLRRRTRVGMGTCQGELCACRAAGLLQRFNVTTSAQSIEQLSTFLNERWKGVQPIASGDALRESEFTRWVYQGLCGLEKEQKDAL
>NZ_CP053251.1|WP_001774000.1|3857478_3858738_+|glycerol-3-phosphate-dehydrogenase-subunit-GlpB
MHFDTVIMGGGLAGLLCGLQLQKHGLRCAIVTRGQSALHFSSGSLDLLSHLPDGQPVTDIHSGLESLRQQAPAHPYTLLGPQRVLDLACQAQALIAESGAQLQGSVELAHQRITPLGTLRSTWLSSPEVPVWPLPAKKICVVGISGLMDFQAHLAAASLRELDLKVETAEIELPELDVLRNNATEFRAVNIARFLDNEENWPLLLDALIPVANTCEMILMPACFGLADDKLWHWLNEKLPCSLMLLPTLPPSVLGIRLQNQLQRQFVRQGGVWMPGDEVKKVTCKNGVVNEIWTRNHADIPLRPRFAVLASGSFFSGGLVAERDGIREPILGLDVLQTATRGEWYKGDFFAPQPWQQFGVTTDEALRPSQAGQTIENLFAIGSVLGGFDPIAQGCGGGVCAVSALHAAQQIAQRAGGQQ
>NZ_CP053251.1|WP_001000377.1|3858734_3859925_+|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C
MNDTSFENCIKCTVCTTACPVSRVNPGYPGPKQAGPDGERLRLKDGALYDEALKYCINCKRCEVACPSDVKIGDIIQRARAKYDTTRPSLRNFVLSHTDLMGSVSTPFAPIVNTATSLKPVRQLLDAALKIDHRRTLPKYSFGTFRRWYRSVAAQQAQYKDQVAFFHGCFVNYNHPQLGKDLIKVLNAMGTGVQLLSKEKCCGVPLIANGFTDKARKQAITNVESIREAVGVKGIPVIATSSTCTFALRDEYPEVLNVDNKGLRDHIELATRWLWRKLDEGKTLPLKPLPLKVVYHTPCHMEKMGWTLYTLELLRKIPGLELTVLDSQCCGIAGTYGFKKENYPTSQAIGAPLFRQIEESGADLVVTDCETCKWQIEMSTSLRCEHPITLLAQALA
>NZ_CP053251.1|WP_001539153.1|3860117_3861029_+|ISNCY-family-transposase
MTESTTSSPHDAVFKTFMFTPETARDFLEIHLPEPLRKLCNLQTLRLEPTSFIEKSLRAYYSDVLWSVETSEGDGYIYCVIEHQSSAEKNMAFRLMRYATAAMQRHLDKGYDRVPLVVPLLFYHGEASPYPYSLNWLDEFDDPQLARQLYTEAFPLVDITIVPDDEIMQHRRIALLELIQKHIRDRDLIGMVDRITTLLVRGFTNDSQLQTLFNYLLQCGDTSRFTRFIQEIAERSPLQKERLMTITERLRQEGHQIGWQEGKIEGLHEQAIKIALRMLEQGFEREIVLAATQLTDADIPNCH
>NZ_CP053251.1|WP_000150331.1|3861041_3861263_+|hypothetical-protein
MTIAERLRQEGHQIGWQEGKIEGWQEGKLEGLQEGMHEQAIKIALRMLEQGIDRDQVLAATQLSEADLAANNH

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP053251_3	3.2\|2364050\|32\|NZ_CP053251\|CRISPRCasFinder	2364050-2364081	32	NC_015163	Deinococcus proteolyticus MRP plasmid pDEIPR04, complete sequence	83332-83363	8	0.75
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229083-229131	9	0.816
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229184-229232	9	0.816
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229285-229333	9	0.816
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239577-239625	9	0.816
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239678-239726	9	0.816
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239779-239827	9	0.816
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230489-230537	9	0.816
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230590-230638	9	0.816
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230691-230739	9	0.816
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211459-211507	9	0.816
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211560-211608	9	0.816
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211661-211709	9	0.816
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229386-229434	10	0.796
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239880-239928	10	0.796
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230792-230840	10	0.796
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211762-211810	10	0.796
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_CP044147	Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2	7442-7490	10	0.796
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	CP044351	Escherichia coli strain 194195 plasmid p194195_1, complete sequence	84266-84314	10	0.796
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	386508-386556	10	0.796
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	14196-14244	10	0.796
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	194003-194051	11	0.776
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	194096-194144	11	0.776
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	194282-194330	11	0.776
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	204497-204545	11	0.776
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	204590-204638	11	0.776
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	204776-204824	11	0.776
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	195331-195379	11	0.776
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	195424-195472	11	0.776
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	195610-195658	11	0.776
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	176286-176334	11	0.776
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	176379-176427	11	0.776
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	176565-176613	11	0.776
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	27282-27330	11	0.776
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	27381-27429	11	0.776
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	51834-51882	11	0.776
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_AP023209	Escherichia coli strain TUM18781 plasmid pMTY18781-4, complete sequence	19389-19437	11	0.776
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	211730-211778	12	0.755
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	211930-211978	12	0.755
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	194189-194237	12	0.755
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	222224-222272	12	0.755
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	222424-222472	12	0.755
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	204683-204731	12	0.755
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	213058-213106	12	0.755
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	213258-213306	12	0.755
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	195517-195565	12	0.755
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	194013-194061	12	0.755
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	194213-194261	12	0.755
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	176472-176520	12	0.755
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	11511-11559	12	0.755
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	397088-397136	12	0.755
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	404133-404181	12	0.755
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_AP023207	Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence	27994-28042	12	0.755
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_AP023207	Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence	31299-31347	12	0.755
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	MG065691	UNVERIFIED: Campylobacter phage A11a, complete genome	33059-33107	12	0.755
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	MG065686	UNVERIFIED: Campylobacter phage A18a, complete genome	141016-141064	12	0.755
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	MF374379	Escherichia phage DN1, complete genome	31158-31206	12	0.755
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	14105-14153	13	0.735
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	6859-6907	13	0.735
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NC_049343	Escherichia phage 500465-2, complete genome	31797-31845	13	0.735
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	MT230112	Escherichia coli strain DH5alpha plasmid pESBL112, complete sequence	94-142	13	0.735
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	82842-82890	14	0.714
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	313592-313640	14	0.714
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	MG065691	UNVERIFIED: Campylobacter phage A11a, complete genome	63889-63937	14	0.714
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	MG065686	UNVERIFIED: Campylobacter phage A18a, complete genome	110186-110234	14	0.714
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_CP053721	Escherichia coli strain CP131_Sichuan plasmid pCP131-IncHI1, complete sequence	198909-198957	14	0.714
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_CP019246	Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence	40305-40353	14	0.714
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_CP044299	Escherichia coli strain P59A plasmid pP59A-CTX-M-55, complete sequence	91418-91466	14	0.714
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	102544-102592	15	0.694
NZ_CP053251_4	4.1\|3850454\|49\|NZ_CP053251\|CRISPRCasFinder	3850454-3850502	49	NZ_CP044308	Escherichia coli strain C27A plasmid pC27A-3, complete sequence	56031-56079	15	0.694

1. spacer 3.2|2364050|32|NZ_CP053251|CRISPRCasFinder matches to NC_015163 (Deinococcus proteolyticus MRP plasmid pDEIPR04, complete sequence) position: , mismatch: 8, identity: 0.75

ttgccgcggatcctgtctgccaataatgacaa	CRISPR spacer
ctggacggcatcctgtctgccaattttgacaa	Protospacer
.**    * ***************  ******

2. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 9, identity: 0.816

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtgaacgccttatccggcctacggatggcg	Protospacer
. **. **********.************************** * * .

3. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 9, identity: 0.816

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtgaacgccttatccggcctacggatggcg	Protospacer
. **. **********.************************** * * .

4. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 9, identity: 0.816

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtgaacgccttatccggcctacgggtggcg	Protospacer
. **. **********.************************** * * .

5. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 9, identity: 0.816

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtgaacgccttatccggcctacggatggcg	Protospacer
. **. **********.************************** * * .

6. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 9, identity: 0.816

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtgaacgccttatccggcctacggatggcg	Protospacer
. **. **********.************************** * * .

7. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 9, identity: 0.816

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtgaacgccttatccggcctacgggtggcg	Protospacer
. **. **********.************************** * * .

8. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 9, identity: 0.816

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtgaacgccttatccggcctacggatggcg	Protospacer
. **. **********.************************** * * .

9. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 9, identity: 0.816

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtgaacgccttatccggcctacggatggcg	Protospacer
. **. **********.************************** * * .

10. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 9, identity: 0.816

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtgaacgccttatccggcctacgggtggcg	Protospacer
. **. **********.************************** * * .

11. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 9, identity: 0.816

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtgaacgccttatccggcctacggatggcg	Protospacer
. **. **********.************************** * * .

12. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 9, identity: 0.816

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtgaacgccttatccggcctacggatggcg	Protospacer
. **. **********.************************** * * .

13. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 9, identity: 0.816

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtgaacgccttatccggcctacgggtggcg	Protospacer
. **. **********.************************** * * .

14. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 10, identity: 0.796

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtaaacgccttatccggcctacggatggcg	Protospacer
. **. **********.****.********************* * * .

15. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 10, identity: 0.796

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtaaacgccttatccggcctacggatggcg	Protospacer
. **. **********.****.********************* * * .

16. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 10, identity: 0.796

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtaaacgccttatccggcctacggatggcg	Protospacer
. **. **********.****.********************* * * .

17. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 10, identity: 0.796

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacgactgccggatgcggcgtaaacgccttatccggcctacggatggcg	Protospacer
. **. **********.****.********************* * * .

18. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 10, identity: 0.796

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacaattgccggatgcggcgtgaacgccttatccggcctacggttgagt	Protospacer
. *.. **********.**************************.* .*

19. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 10, identity: 0.796

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacaattgccggatgcggcgtgaacgccttatccggcctacggttgagt	Protospacer
. *.. **********.**************************.* .*

20. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 10, identity: 0.796

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga--	CRISPR spacer
cacaagtgccggatgcggcgtaaacgccttatccggcctacg--ccagact	Protospacer
. *..***********.****.********************  .*.**

21. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 10, identity: 0.796

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
gctggttgccggatgcggcgtgaacgccttatccggcctacattcggca	Protospacer
 *.** **********.************************. .. * *

22. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
tgttcatgccggatgcggcgtgaacgccttatccggcctacgaatggcg	Protospacer
* .  .**********.*************************. * * .

23. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccattgccggatgcggcgtgaacgccttatccggcctacgaatggcg	Protospacer
. * . **********.*************************. * * .

24. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccattgccggatgcggcgtgaacgccttatccggcctacgagtggcg	Protospacer
. * . **********.*************************. * * .

25. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
tgttcatgccggatgcggcgtgaacgccttatccggcctacgaatggcg	Protospacer
* .  .**********.*************************. * * .

26. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccattgccggatgcggcgtgaacgccttatccggcctacgaatggcg	Protospacer
. * . **********.*************************. * * .

27. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccattgccggatgcggcgtgaacgccttatccggcctacgagtggcg	Protospacer
. * . **********.*************************. * * .

28. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
tgttcatgccggatgcggcgtgaacgccttatccggcctacgaatggcg	Protospacer
* .  .**********.*************************. * * .

29. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccattgccggatgcggcgtgaacgccttatccggcctacgaatggcg	Protospacer
. * . **********.*************************. * * .

30. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccattgccggatgcggcgtgaacgccttatccggcctacgagtggcg	Protospacer
. * . **********.*************************. * * .

31. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
tgttcatgccggatgcggcgtgaacgccttatccggcctacgaatggcg	Protospacer
* .  .**********.*************************. * * .

32. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccattgccggatgcggcgtgaacgccttatccggcctacgaatggcg	Protospacer
. * . **********.*************************. * * .

33. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccattgccggatgcggcgtgaacgccttatccggcctacgagtggcg	Protospacer
. * . **********.*************************. * * .

34. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacaaccgccggatgcggcgtgaacgccttatccggcctacgggtgagc	Protospacer
. *.. .*********.************************** * .*

35. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
cacaaccgccggatgcggcgtgaacgccttatccggcctacgggtgagt	Protospacer
. *.. .*********.************************** * .*

36. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
agctggtgccggatgcggcgtaaacgccttatccggcctacaaatgcgc	Protospacer
  * ************.****.*******************.. *  *

37. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_AP023209 (Escherichia coli strain TUM18781 plasmid pMTY18781-4, complete sequence) position: , mismatch: 11, identity: 0.776

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
tgtttatgccggatgcggtgtgaacgccttatccggcctacggatggcc	Protospacer
* .  .**********.*.************************ * *

38. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
agtttatgccggatgcggcgtgaacgccttatccggcctacgtagagca	Protospacer
  .  .**********.*************************    * *

39. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
agtttatgccggatgcggcgtgaacgccttatccggcctacgtagagca	Protospacer
  .  .**********.*************************    * *

40. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccactgccggatgcggcgtggacgccttatccggcctacgagtggcg	Protospacer
. * . **********.*****.*******************. * * .

41. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
agtttatgccggatgcggcgtgaacgccttatccggcctacgtagagca	Protospacer
  .  .**********.*************************    * *

42. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
agtttatgccggatgcggcgtgaacgccttatccggcctacgtagagca	Protospacer
  .  .**********.*************************    * *

43. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccactgccggatgcggcgtggacgccttatccggcctacgagtggcg	Protospacer
. * . **********.*****.*******************. * * .

44. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
agtttatgccggatgcggcgtgaacgccttatccggcctacgtagagca	Protospacer
  .  .**********.*************************    * *

45. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
agtttatgccggatgcggcgtgaacgccttatccggcctacgtagagca	Protospacer
  .  .**********.*************************    * *

46. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccactgccggatgcggcgtggacgccttatccggcctacgagtggcg	Protospacer
. * . **********.*****.*******************. * * .

47. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
agtttatgccggatgcggcgtgaacgccttatccggcctacgtagagca	Protospacer
  .  .**********.*************************    * *

48. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
agtttatgccggatgcggcgtgaacgccttatccggcctacgtagagca	Protospacer
  .  .**********.*************************    * *

49. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccactgccggatgcggcgtggacgccttatccggcctacgagtggcg	Protospacer
. * . **********.*****.*******************. * * .

50. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
aatttttgccggatgcggcgtgaacgccttatccggcctacaacgggca	Protospacer
  .   **********.************************..*  * *

51. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga---	CRISPR spacer
cacaattgccggatgcggcgtaaacgccttatccggcctaca---tggataa	Protospacer
. *.. **********.****.*******************.   .***

52. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
ttttcttgccggatgcggcgtaaacgccttatccggcctacaggacgtg	Protospacer
*..   **********.****.*******************.*  ** .

53. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
ctcaaatgccggatgcggcgtgaacgccttatccggcctacgcacacta	Protospacer
..*...**********.*************************  .   *

54. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
agcaaatgccggatgcggcgtaaacgccttatccggcctacatttggca	Protospacer
  *...**********.****.*******************. .* * *

55. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to MG065691 (UNVERIFIED: Campylobacter phage A11a, complete genome) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
acactttgccggatgcggcgtgaacgcctgatccggcctacggtaagcc	Protospacer
 *    **********.************ *************.  *

56. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to MG065686 (UNVERIFIED: Campylobacter phage A18a, complete genome) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
acactttgccggatgcggcgtgaacgcctgatccggcctacggtaagcc	Protospacer
 *    **********.************ *************.  *

57. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to MF374379 (Escherichia phage DN1, complete genome) position: , mismatch: 12, identity: 0.755

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
tgtttatgccggatgcggcgtgaacgccttatccggcctacaaaccgcg	Protospacer
* .  .**********.************************.. .** .

58. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 13, identity: 0.735

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
gttgattgccggatgcggcgtaaacgccttatccggcctacattcggca	Protospacer
 ..*. **********.****.*******************. .. * *

59. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 13, identity: 0.735

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
ttgttttgccggatgcggcgtgaacgccttatccggcctacaaaaccat	Protospacer
*.    **********.************************..  * .

60. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NC_049343 (Escherichia phage 500465-2, complete genome) position: , mismatch: 13, identity: 0.735

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
agtgtttgccggatgcggcgtgaacgccttatccgacctacgtgtgacg	Protospacer
  .*  **********.******************.******  * . .

61. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to MT230112 (Escherichia coli strain DH5alpha plasmid pESBL112, complete sequence) position: , mismatch: 13, identity: 0.735

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
ttatgttgccggatgcggcgtaaacgccttatccggcctacaaaagcaa	Protospacer
*.  * **********.****.*******************..    .*

62. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 14, identity: 0.714

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
gtaaaatgccggatgcggcgtgaacgccttatccggcctacaaaccaag	Protospacer
 . ...**********.************************.. .*...

63. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 14, identity: 0.714

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
acaaaatgccggatgcggcgtaaacgccttatccggcctacaaaatcgt	Protospacer
 * ...**********.****.*******************..  . *

64. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to MG065691 (UNVERIFIED: Campylobacter phage A11a, complete genome) position: , mismatch: 14, identity: 0.714

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
gcttcttgccggatgcggcgtgaacgccttatccggcctacaaaatcat	Protospacer
 *.   **********.************************..  . .

65. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to MG065686 (UNVERIFIED: Campylobacter phage A18a, complete genome) position: , mismatch: 14, identity: 0.714

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
gcttcttgccggatgcggcgtgaacgccttatccggcctacaaaatcat	Protospacer
 *.   **********.************************..  . .

66. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_CP053721 (Escherichia coli strain CP131_Sichuan plasmid pCP131-IncHI1, complete sequence) position: , mismatch: 14, identity: 0.714

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
tgttcatgccggatgcggcgtgaacgccttatccagcctacaaaattgt	Protospacer
* .  .**********.*****************.******..  . *

67. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_CP019246 (Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence) position: , mismatch: 14, identity: 0.714

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
tgtttatgccggatgcggcgtaaacgccttatccggcctacaaaaagcg	Protospacer
* .  .**********.****.*******************..   * .

68. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_CP044299 (Escherichia coli strain P59A plasmid pP59A-CTX-M-55, complete sequence) position: , mismatch: 14, identity: 0.714

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
tgttcatgccggatgcggcgtgaacgccttatccagcctacaaaattgt	Protospacer
* .  .**********.*****************.******..  . *

69. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 15, identity: 0.694

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
agtcaatgccggatgcggcgtgaacgccttatccggcctacaaaagcat	Protospacer
  . ..**********.************************..    .

70. spacer 4.1|3850454|49|NZ_CP053251|CRISPRCasFinder matches to NZ_CP044308 (Escherichia coli strain C27A plasmid pC27A-3, complete sequence) position: , mismatch: 15, identity: 0.694

tccgggtgccggatgcagcgtgaacgccttatccggcctacggctcgga	CRISPR spacer
caccattgccggatgcggcgtaaacgccttatccggcctacaaaaaacg	Protospacer
. * . **********.****.*******************..   . .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

691525 : 768279

Escherichia_phage(44.19%)

integrase,lysis,capsid,terminase,tail,tRNA,plate,portal,holin,protease,head

attL 718497:718543|attR 752300:752346

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000560978.1\|691525_691963_+\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
WP_001297068.1\|692007_692949_+	fatty acid biosynthesis protein FabY	NA	NA	NA	NA
WP_001774092.1\|693012_693921_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_000356397.1\|694461_694752_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_001296612.1\|695110_695389_+	hypothetical protein	NA	NA	NA	NA
WP_001314326.1\|695784_696003_+	CopG family transcriptional regulator	NA	NA	NA	NA
WP_000027720.1\|696218_697148_-	formate dehydrogenase accessory protein FdhE	NA	NA	NA	NA
WP_000829013.1\|697144_697780_-	formate dehydrogenase cytochrome b556 subunit	NA	NA	NA	NA
WP_000331377.1\|697776_698679_-	formate dehydrogenase O subunit beta	NA	NA	NA	NA
WP_171274412.1\|698691_701742_-	formate dehydrogenase-N subunit alpha	A0A077SK27	Escherichia_phage	1.1e-07	23.8
WP_001774093.1\|701935_702769_+	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
WP_000749934.1\|703763_705158_+	carbohydrate porin	NA	NA	NA	NA
WP_000619492.1\|705198_705513_-	L-rhamnose mutarotase	NA	NA	NA	NA
WP_001540285.1\|705522_706347_-	rhamnulose-1-phosphate aldolase	NA	NA	NA	NA
WP_001540286.1\|706807_708067_-	L-rhamnose isomerase	NA	NA	NA	NA
WP_001540290.1\|709821_710658_+	HTH-type transcriptional activator RhaS	NA	NA	NA	NA
WP_001296618.1\|710641_711580_+	HTH-type transcriptional activator RhaR	NA	NA	NA	NA
WP_000063507.1\|711576_712611_-	L-rhamnose/proton symporter RhaT	NA	NA	NA	NA
WP_001298417.1\|712896_713517_+	superoxide dismutase [Mn]	Q56AR7	Bacillus_thuringiensis_phage	8.4e-64	59.8
WP_032146477.1\|713814_714759_+	2-keto-3-deoxygluconate transporter	NA	NA	NA	NA
WP_001540294.1\|714907_715582_+	6-N-hydroxylaminopurine resistance protein	NA	NA	NA	NA
WP_001033719.1\|717124_717823_-	envelope stress response regulator transcription factor CpxR	Q6XM27	Feldmannia_irregularis_virus	5.3e-06	30.3
WP_001223800.1\|717972_718473_+	cell-envelope stress modulator CpxP	NA	NA	NA	NA
718497:718543	attL	NA	NA	NA	NA
WP_000023384.1\|718658_719639_-\|integrase	tyrosine-type recombinase/integrase	U5N0A8	Enterobacteria_phage	4.7e-186	100.0
WP_001192857.1\|719708_720002_-	helix-turn-helix domain-containing protein	Q1JS45	Enterobacteria_phage	1.0e-48	100.0
WP_000453534.1\|720154_720427_+	hypothetical protein	Q1JS44	Enterobacteria_phage	1.5e-46	100.0
WP_000217670.1\|720595_721096_+	hypothetical protein	M1SV55	Escherichia_phage	2.6e-92	100.0
WP_000557703.1\|721159_721384_+	DUF2732 family protein	S4TP68	Salmonella_phage	4.7e-33	100.0
WP_001277961.1\|721383_721686_+	DUF5405 family protein	Q7Y4C1	Escherichia_virus	3.8e-46	99.0
WP_001113264.1\|721685_721910_+	TraR/DksA family transcriptional regulator	S4TRY6	Salmonella_phage	2.9e-35	100.0
WP_001774094.1\|721906_722182_+	DUF5405 family protein	S4TP00	Salmonella_phage	1.5e-44	97.8
WP_001774095.1\|722171_724448_+	replication endonuclease	A0A0F7LBQ2	Escherichia_phage	0.0e+00	97.2
WP_001774096.1\|724626_725178_+	3'-5' exoribonuclease	D4HTX2	Vibrio_phage	7.0e-38	47.0
WP_001774097.1\|725271_726831_+	hypothetical protein	NA	NA	NA	NA
WP_001774098.1\|727184_728219_-\|portal	phage portal protein	Q858W8	Yersinia_virus	1.6e-200	99.1
WP_000156861.1\|728218_729991_-\|terminase	terminase ATPase subunit family protein	A0A0F7LCK3	Escherichia_phage	0.0e+00	99.8
WP_001085948.1\|730164_731019_+\|capsid	GPO family capsid scaffolding protein	Q94MB7	Escherichia_virus	1.7e-139	89.4
WP_001774099.1\|731077_732151_+\|capsid	phage major capsid protein, P2 family	Q94MC7	Enterobacteria_phage	3.0e-202	99.7
WP_001774100.1\|732154_732898_+\|terminase	terminase endonuclease subunit	A0A0F7LDU4	Escherichia_phage	1.9e-123	98.8
WP_000988633.1\|732997_733507_+\|head	head completion/stabilization protein	U5N0S3	Enterobacteria_phage	1.1e-90	100.0
WP_000846409.1\|733506_733710_+\|tail	tail protein X	A0A0F7LCN2	Escherichia_phage	3.0e-31	100.0
WP_000123124.1\|733713_733995_+\|holin	holin	A0A0F7LDF8	Escherichia_phage	3.7e-43	100.0
WP_001144101.1\|733994_734492_+	glycoside hydrolase family 104 protein	A0A0F7LBS0	Escherichia_phage	3.1e-93	100.0
WP_171274413.1\|734506_734932_+	protein lysA	U5N096	Enterobacteria_phage	3.3e-59	97.2
WP_001774101.1\|734919_735345_+\|lysis	LysB family phage lysis regulatory protein	U5N3W5	Enterobacteria_phage	1.0e-65	95.7
WP_001300730.1\|735316_735490_+	hypothetical protein	Q7Y4E1	Escherichia_virus	5.2e-24	94.7
WP_001774102.1\|735452_735920_+\|tail	phage tail protein	Q7Y4E0	Escherichia_virus	9.7e-81	98.1
WP_001774103.1\|735912_736365_+	phage virion morphogenesis protein	A0A0F7LBV9	Escherichia_phage	6.9e-76	98.7
WP_001774104.1\|736431_737073_+\|plate	phage baseplate assembly protein V	A0A0F7LBP2	Escherichia_phage	5.4e-98	89.8
WP_001774105.1\|737069_737417_+	GPW/gp25 family protein	A0A0F7L9X3	Escherichia_phage	7.2e-57	98.3
WP_001121474.1\|737421_738330_+\|plate	baseplate assembly protein	A0A0F7LCJ3	Escherichia_phage	1.2e-162	100.0
WP_001774106.1\|738322_738853_+\|tail	phage tail protein I	Q858V5	Yersinia_virus	2.4e-99	96.6
WP_001774107.1\|738863_741593_+\|tail	phage tail protein	Q858V4	Yersinia_virus	0.0e+00	80.7
WP_001774108.1\|741596_742121_+\|tail	tail fiber assembly protein	Q858V3	Yersinia_virus	7.5e-90	93.7
WP_001774109.1\|742393_743779_+	hypothetical protein	NA	NA	NA	NA
WP_001774110.1\|744058_745105_+	DUF3800 domain-containing protein	NA	NA	NA	NA
WP_001286716.1\|745586_746777_+\|tail	phage tail sheath protein	A0A0F7LBW9	Escherichia_phage	1.6e-225	100.0
WP_001251408.1\|746789_747308_+\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	1.4e-93	100.0
WP_001774111.1\|747364_747640_+\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	6.3e-40	97.8
WP_000785970.1\|747672_747792_+\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	1.0e-15	100.0
WP_001774112.1\|747784_750232_+\|tail	phage tail tape measure protein	M1T2S3	Escherichia_phage	0.0e+00	99.1
WP_001774113.1\|750246_750726_+\|tail	phage tail protein	A0A0F7LBX3	Escherichia_phage	1.9e-84	98.7
WP_001774114.1\|750725_751889_+	phage late control D family protein	U5N3V4	Enterobacteria_phage	3.5e-204	99.0
WP_000468308.1\|751970_752189_+	prophage transcriptional regulator OgrK	A0A0F7LDQ9	Escherichia_phage	4.7e-38	100.0
WP_001076748.1\|752424_753327_+	CDF family cation-efflux transporter FieF	NA	NA	NA	NA
752300:752346	attR	NA	NA	NA	NA
WP_001318165.1\|753507_754470_+	6-phosphofructokinase	NA	NA	NA	NA
WP_000758726.1\|754789_755779_+	sulfate/thiosulfate ABC transporter substrate-binding protein Sbp	NA	NA	NA	NA
WP_001774116.1\|755885_756641_+	CDP-diacylglycerol diphosphatase	NA	NA	NA	NA
WP_001216325.1\|756695_757463_-	triose-phosphate isomerase	NA	NA	NA	NA
WP_000802217.1\|757570_758170_-	YiiQ family protein	NA	NA	NA	NA
WP_000155257.1\|758270_758711_+	DUF805 domain-containing protein	NA	NA	NA	NA
WP_000655986.1\|758922_759222_+	DUF406 domain-containing protein	NA	NA	NA	NA
WP_000323555.1\|759248_759677_+	universal stress protein UspD	NA	NA	NA	NA
WP_000796345.1\|759681_760428_-	ferredoxin--NADP(+) reductase	NA	NA	NA	NA
WP_001250644.1\|760524_761535_-	class II fructose-bisphosphatase	NA	NA	NA	NA
WP_000136804.1\|761705_763214_-	glycerol kinase GlpK	NA	NA	NA	NA
WP_000084268.1\|763236_764082_-	glycerol uptake facilitator protein GlpF	M1HWZ0	Paramecium_bursaria_Chlorella_virus	4.4e-15	28.0
WP_001296623.1\|764506_764752_+	septal ring assembly protein ZapB	NA	NA	NA	NA
WP_000872908.1\|764836_765322_-	ribonuclease E activity regulator RraA	NA	NA	NA	NA
WP_001305044.1\|765414_766341_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA
WP_001293344.1\|766407_767739_-	HslU--HslV peptidase ATPase subunit	A0A191ZC11	Erwinia_phage	1.7e-45	29.9
WP_000208242.1\|767748_768279_-\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA

DBSCAN-SWA_2

1585547 : 1660588

uncultured_Mediterranean_phage(12.5%)

plate,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000753942.1\|1585547_1586972_+\|protease	serine endoprotease DegP	A0A1B1IT49	uncultured_Mediterranean_phage	2.5e-26	28.8
WP_000929439.1\|1587126_1588284_+	DNA-binding transcriptional regulator CdaR	NA	NA	NA	NA
WP_000272188.1\|1588337_1588724_-	DUF3461 family protein	NA	NA	NA	NA
WP_001532914.1\|1588885_1589698_-	phosphodiesterase YaeI	NA	NA	NA	NA
WP_001186656.1\|1589751_1590576_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA
WP_001094534.1\|1590606_1593279_-	bifunctional uridylyltransferase/uridylyl-removing protein GlnD	NA	NA	NA	NA
WP_001018194.1\|1593340_1594135_-	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_000246882.1\|1594502_1595228_+	30S ribosomal protein S2	NA	NA	NA	NA
WP_000818114.1\|1595362_1596214_+	elongation factor Ts	NA	NA	NA	NA
WP_000224573.1\|1596360_1597086_+	UMP kinase	NA	NA	NA	NA
WP_000622418.1\|1597235_1597793_+	ribosome recycling factor	NA	NA	NA	NA
WP_000811911.1\|1597884_1599081_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_001295562.1\|1599269_1600028_+	(2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase	R9W0U9	Flavobacterium_phage	7.7e-27	44.4
WP_000922441.1\|1600040_1600898_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_001298422.1\|1600909_1602262_+\|protease	sigma E protease regulator RseP	NA	NA	NA	NA
WP_001240896.1\|1602291_1604724_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_000758956.1\|1604845_1605331_+	molecular chaperone Skp	NA	NA	NA	NA
WP_001540749.1\|1605334_1606360_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_000210739.1\|1606464_1606920_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_000565966.1\|1606923_1607712_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_000139678.1\|1607711_1608860_+	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_000569423.1\|1608856_1609453_+	ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	2.3e-26	40.0
WP_001294747.1\|1609489_1612972_+	DNA polymerase III subunit alpha	Q8W6C3	Saccharomonospora_phage	3.7e-209	36.8
WP_000055741.1\|1612984_1613944_+	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA
WP_001540752.1\|1614041_1616183_+	lysine decarboxylase LdcC	NA	NA	NA	NA
WP_000901082.1\|1616239_1616629_+	VOC family protein	NA	NA	NA	NA
WP_001773843.1\|1616693_1618007_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_000062305.1\|1618040_1618301_-	Rho-binding antiterminator	NA	NA	NA	NA
WP_000417058.1\|1618287_1618488_-	YaeP family protein	NA	NA	NA	NA
WP_001540755.1\|1618653_1619199_+	YaeQ family protein	NA	NA	NA	NA
WP_000635534.1\|1619195_1619618_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_000360465.1\|1620495_1621320_-	YaeF family permuted papain-like enzyme	NA	NA	NA	NA
WP_001260694.1\|1621372_1623091_-\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
WP_001773844.1\|1623201_1623909_-\|tRNA	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	NA	NA	NA	NA
WP_001202329.1\|1623905_1624310_-	Rcs stress response system protein RcsF	NA	NA	NA	NA
WP_000874226.1\|1624427_1625243_-	methionine ABC transporter substrate-binding lipoprotein MetQ	NA	NA	NA	NA
WP_001294595.1\|1625282_1625936_-	methionine ABC transporter permease MetI	NA	NA	NA	NA
WP_171274436.1\|1625928_1626960_-	methionine ABC transporter ATP-binding protein MetN	G9BWD6	Planktothrix_phage	5.5e-36	40.2
WP_001140167.1\|1627147_1627720_+	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	NA	NA	NA	NA
WP_000648548.1\|1634276_1635191_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_001230983.1\|1635431_1636232_+	endonuclease/exonuclease/phosphatase family protein	NA	NA	NA	NA
WP_000211705.1\|1636309_1637080_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000644685.1\|1637126_1638485_-	murein transglycosylase D	A0A2H4J9N7	uncultured_Caudovirales_phage	5.8e-09	36.0
WP_001052743.1\|1638556_1639312_-	hydroxyacylglutathione hydrolase	NA	NA	NA	NA
WP_171274437.1\|1639345_1640068_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_001308374.1\|1640599_1641331_+	DNA polymerase III subunit epsilon	A0A1X9SH08	Bradyrhizobium_phage	7.6e-40	38.6
WP_001049698.1\|1641868_1642654_+	hypothetical protein	NA	NA	NA	NA
WP_000013180.1\|1642993_1643473_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_001538289.1\|1643490_1644849_-	type VI secretion system ImpA family N-terminal domain-containing protein	NA	NA	NA	NA
WP_171274524.1\|1644859_1648345_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_001337590.1\|1648407_1649850_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_001538291.1\|1649854_1650598_-	type VI secretion system-associated protein TagO	NA	NA	NA	NA
WP_001538292.1\|1650594_1653357_-	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	6.1e-82	31.3
WP_001282178.1\|1653366_1654131_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_000224516.1\|1654135_1655482_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_001013423.1\|1655484_1656009_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_000433564.1\|1656005_1657298_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_000896714.1\|1657302_1658352_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_001538293.1\|1658315_1660157_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_000946068.1\|1660162_1660588_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

DBSCAN-SWA_3

2293804 : 2361442

Salmonella_phage(65.38%)

integrase,lysis,capsid,terminase,tail,plate,portal,protease,head

attL 2290586:2290600|attR 2300843:2300857

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2290586:2290600	attL	NA	NA	NA	NA
WP_000290933.1\|2293804_2294857_-\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	3.6e-107	57.3
WP_001321204.1\|2295043_2295235_-	hypothetical protein	A0A0R6PIH8	Moraxella_phage	4.0e-09	68.2
WP_097485749.1\|2295250_2295820_-	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	5.5e-38	42.9
WP_001247707.1\|2295945_2296167_+	hypothetical protein	NA	NA	NA	NA
WP_000460893.1\|2296199_2296709_+	phage regulatory CII family protein	E5G6L3	Salmonella_phage	5.8e-87	98.8
WP_000956182.1\|2296716_2296917_+	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	7.1e-33	98.5
WP_000963472.1\|2296880_2297222_+	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	1.3e-55	98.2
WP_053294925.1\|2297289_2297523_+	DUF2732 family protein	E5G6L6	Salmonella_phage	2.0e-31	96.1
WP_000752619.1\|2297522_2297750_+	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	3.5e-36	98.7
WP_058101138.1\|2297746_2298604_+	DNA adenine methylase	E5G6L8	Salmonella_phage	8.6e-160	96.8
WP_171274449.1\|2298600_2301015_+	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	97.5
2300843:2300857	attR	NA	NA	NA	NA
WP_001154431.1\|2301169_2301358_+	hypothetical protein	E5G6M0	Salmonella_phage	1.6e-26	96.8
WP_001217575.1\|2301368_2301602_+	DinI family protein	E5G6M1	Salmonella_phage	4.7e-36	100.0
WP_097335536.1\|2303627_2304656_-\|portal	phage portal protein	E5G6M3	Salmonella_phage	1.2e-171	88.5
WP_001098431.1\|2304655_2306422_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.7
WP_000216237.1\|2306564_2307398_+\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	2.8e-123	91.0
WP_000742511.1\|2307414_2308473_+\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	2.9e-181	93.4
WP_000059191.1\|2308476_2309127_+\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	8.7e-112	96.3
WP_000673530.1\|2309222_2309687_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	1.9e-76	89.0
WP_053294931.1\|2309686_2309890_+\|tail	tail protein X	E5G6M9	Salmonella_phage	5.2e-31	91.0
WP_000171568.1\|2309893_2310109_+	hypothetical protein	E5G6N0	Salmonella_phage	1.8e-26	80.3
WP_001069905.1\|2310089_2310602_+	lysozyme	E5G6N1	Salmonella_phage	3.1e-88	92.3
WP_000727851.1\|2310603_2310981_+	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	3.9e-16	40.0
WP_058101141.1\|2310977_2311406_+\|lysis	LysB family phage lysis regulatory protein	E5G6N2	Salmonella_phage	3.8e-47	76.6
WP_001039943.1\|2311501_2311933_+\|tail	phage tail protein	E5G6N3	Salmonella_phage	7.6e-72	93.7
WP_058101142.1\|2311925_2312369_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	2.8e-61	84.4
WP_058101143.1\|2312387_2313149_-	hypothetical protein	NA	NA	NA	NA
WP_058101144.1\|2313241_2313820_+\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	1.0e-92	84.9
WP_040091093.1\|2313816_2314176_+	GPW/gp25 family protein	A0A1S6KZZ4	Salmonella_phage	6.5e-53	89.1
WP_058101145.1\|2314162_2315071_+\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	2.7e-143	90.4
WP_058101146.1\|2315063_2315669_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	5.8e-110	92.0
WP_171274450.1\|2315665_2317066_+\|tail	phage tail protein	M1TAS6	Escherichia_phage	2.0e-161	82.5
WP_001106829.1\|2317087_2317528_+\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	2.5e-54	70.3
WP_049033594.1\|2317499_2318102_-\|tail	tail fiber assembly protein	A0A0F7LDQ5	Escherichia_phage	6.2e-96	89.5
WP_171274451.1\|2318101_2318635_-\|tail	tail fiber protein	A0A0F7LCR3	Escherichia_phage	1.1e-99	97.7
WP_058101149.1\|2318662_2319229_+	recombinase family protein	A0A0F7LA37	Escherichia_phage	1.1e-86	86.3
WP_000046120.1\|2319371_2320544_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	2.1e-204	90.3
WP_001207660.1\|2320553_2321069_+\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	2.1e-89	95.3
WP_007866361.1\|2321123_2321426_+\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	2.7e-39	88.0
WP_000763311.1\|2321440_2321560_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.8e-13	87.2
WP_001282787.1\|2321552_2324630_+\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	63.0
WP_000980413.1\|2324626_2325112_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	6.3e-67	80.6
WP_034167057.1\|2325108_2326209_+	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	2.9e-176	87.7
WP_000972391.1\|2326299_2326518_+	ogr/Delta-like zinc finger family protein	Q53ZE7	Salmonella_virus	7.5e-20	69.0
WP_147702098.1\|2326753_2328439_-	aspartate:alanine antiporter	NA	NA	NA	NA
WP_000681104.1\|2328708_2329086_+	membrane protein	NA	NA	NA	NA
WP_001195231.1\|2329115_2329373_-	glutaredoxin 1	A0A2I7SAE2	Vibrio_phage	7.8e-24	63.1
WP_001201570.1\|2329532_2329820_+	DUF1418 family protein	NA	NA	NA	NA
WP_000189165.1\|2329803_2330526_+	nitroreductase NfsA	NA	NA	NA	NA
WP_001538500.1\|2330586_2331489_+	30S ribosomal protein S6--L-glutamate ligase	I3ULC9	Synechococcus_phage	2.6e-37	34.4
WP_000203025.1\|2331576_2332053_+	YbjN domain-containing protein	NA	NA	NA	NA
WP_001538501.1\|2332402_2333515_+	spermidine/putrescine ABC transporter substrate-binding protein PotF	NA	NA	NA	NA
WP_000996007.1\|2333609_2334743_+	putrescine ABC transporter ATP-binding subunit PotG	G3M9Y6	Bacillus_virus	1.4e-29	34.0
WP_000105434.1\|2334752_2335706_+	putrescine ABC transporter permease PotH	NA	NA	NA	NA
WP_001061658.1\|2335702_2336548_+	putrescine ABC transporter permease PotI	NA	NA	NA	NA
WP_000389260.1\|2336607_2337096_+	YbjO family protein	NA	NA	NA	NA
WP_001538502.1\|2337136_2338264_+	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	A0A1X9I6F4	Streptococcus_phage	6.7e-27	27.7
WP_001467833.1\|2338292_2339024_-	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000464491.1\|2339249_2339918_-	arginine ABC transporter permease ArtM	NA	NA	NA	NA
WP_001001692.1\|2339917_2340634_-	arginine ABC transporter permease ArtQ	NA	NA	NA	NA
WP_000756575.1\|2340640_2341372_-	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000027205.1\|2341389_2342118_-	arginine ABC transporter ATP-binding protein ArtP	G9BWD6	Planktothrix_phage	6.0e-29	36.7
WP_001538503.1\|2342335_2342851_-	lipoprotein	NA	NA	NA	NA
WP_001160737.1\|2342976_2343300_+	heavy metal-binding domain-containing protein	NA	NA	NA	NA
WP_001255186.1\|2343296_2344127_+	N-acetylmuramoyl-L-alanine amidase AmiD	A0A1B0UZW5	Roseobacter_phage	5.7e-07	30.0
WP_001538504.1\|2344123_2345137_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_001538505.1\|2345235_2346666_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_000815372.1\|2347713_2349432_-	ubiquinone-dependent pyruvate dehydrogenase	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	4.0e-31	24.1
WP_000178690.1\|2349564_2350533_-	NADH oxidoreductase	NA	NA	NA	NA
WP_000458842.1\|2350544_2352197_-	hydroxylamine reductase	NA	NA	NA	NA
WP_000491135.1\|2352340_2353240_-	L-lysine exporter LysO	NA	NA	NA	NA
WP_001298299.1\|2353560_2354256_-	aquaporin Z	NA	NA	NA	NA
WP_000599809.1\|2354681_2356340_+	ATP-dependent endonuclease	NA	NA	NA	NA
WP_001351020.1\|2356336_2357293_-	DUF535 domain-containing protein	NA	NA	NA	NA
WP_000746478.1\|2357443_2358559_+	macrolide transporter subunit MacA	NA	NA	NA	NA
WP_171274452.1\|2358555_2360502_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.1e-37	40.1
WP_000410785.1\|2360574_2360799_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	2.3e-16	61.2
WP_001538508.1\|2361121_2361442_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.6e-13	44.4

DBSCAN-SWA_4

2597833 : 2682005

Enterobacteria_phage(46.15%)

integrase,lysis,transposase,terminase,capsid,tail,tRNA,portal,holin,head

attL 2594867:2594882|attR 2669005:2669020

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2594867:2594882	attL	NA	NA	NA	NA
WP_000074984.1\|2597833_2598952_-\|integrase	phage integrase Arm DNA-binding domain-containing protein	Q77Z04	Phage_21	5.9e-84	44.2
WP_000003742.1\|2598920_2599190_-	excisionase	NA	NA	NA	NA
WP_001070259.1\|2601787_2601979_-	DUF1482 family protein	NA	NA	NA	NA
WP_000854558.1\|2601975_2602164_-	cell division inhibition protein DicB	NA	NA	NA	NA
WP_001517906.1\|2602564_2602768_+	hypothetical protein	NA	NA	NA	NA
WP_001171946.1\|2602732_2602951_-	hypothetical protein	NA	NA	NA	NA
WP_000379575.1\|2603110_2603266_-	DUF1391 family protein	M4QQ57	Salicola_phage	3.0e-07	53.2
WP_001420344.1\|2603558_2603897_-	peptidase S24	H9C160	Pectobacterium_phage	2.5e-06	32.0
WP_000747951.1\|2604288_2604531_+	hypothetical protein	H9C161	Pectobacterium_phage	4.8e-07	55.8
WP_000693850.1\|2604514_2604940_+	Rha family transcriptional regulator	NA	NA	NA	NA
WP_001262390.1\|2605011_2606082_+	hypothetical protein	A0A088CD36	Shigella_phage	2.6e-52	56.6
WP_001151150.1\|2606122_2606545_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	2.6e-64	90.6
WP_000403785.1\|2606602_2606959_+	hypothetical protein	A0A2R2Z307	Escherichia_phage	1.8e-58	99.2
WP_001550964.1\|2607052_2607235_+	hypothetical protein	A0A2R2Z308	Escherichia_phage	2.4e-27	98.3
WP_000753060.1\|2607227_2607404_+	hypothetical protein	A0A2R2X2A8	Escherichia_phage	6.7e-27	94.8
WP_000813254.1\|2608323_2608479_+	type I toxin-antitoxin system toxin HokD	A0A0U2QV81	Escherichia_phage	1.5e-17	96.1
WP_023141427.1\|2608646_2608919_+	hypothetical protein	I6PCV7	Cronobacter_phage	4.2e-12	50.8
WP_001550965.1\|2608920_2609979_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.7e-88	47.7
WP_000139998.1\|2609979_2610342_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	9.6e-36	63.6
WP_001545909.1\|2610356_2611178_+	antitermination protein	K7P7B9	Enterobacteria_phage	1.8e-77	58.6
WP_000562553.1\|2612073_2612205_+	DUF3927 family protein	H6WZJ7	Escherichia_phage	3.7e-06	100.0
WP_001336019.1\|2612485_2612821_-	anti-adapter protein IraM	Q8HAJ1	Enterobacteria_phage	1.4e-44	75.7
WP_023143432.1\|2615181_2615364_+	DUF1378 family protein	S5MBZ5	Escherichia_phage	5.1e-22	85.0
WP_001538590.1\|2615401_2615647_+	DUF826 domain-containing protein	S5MW40	Escherichia_phage	8.8e-17	92.6
WP_000284506.1\|2615723_2615939_+\|holin	class II holin family protein	Q9ZWW2	Enterobacteria_phage	6.9e-34	100.0
WP_001037014.1\|2615943_2616834_+	YdfR family protein	Q08JA0	Stx2-converting_phage	2.1e-108	70.9
WP_001092866.1\|2616870_2617404_+	lysozyme	Q6H9V6	Enterobacteria_phage	6.7e-102	97.2
WP_001446668.1\|2617560_2617743_+	hypothetical protein	NA	NA	NA	NA
WP_001280932.1\|2617757_2617889_+	hypothetical protein	A0A0P0ZG36	Escherichia_phage	2.6e-07	79.1
WP_032142285.1\|2617891_2618359_+\|lysis	lysis protein	Q6H9V3	Enterobacteria_phage	6.7e-66	84.4
WP_000830178.1\|2618669_2618996_+	TonB family protein	H6WZK5	Escherichia_phage	3.7e-39	72.2
WP_001322427.1\|2619118_2619472_-	hypothetical protein	NA	NA	NA	NA
WP_001538594.1\|2619940_2620489_+\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	1.4e-57	82.0
WP_001538595.1\|2620460_2622389_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	6.1e-262	67.4
WP_000258993.1\|2622372_2622579_+\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	3.0e-10	55.4
WP_001538596.1\|2622575_2624168_+\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	8.4e-185	61.1
WP_001773874.1\|2624157_2625663_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	6.1e-100	53.3
WP_000256835.1\|2625699_2626047_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	2.9e-21	55.9
WP_000522592.1\|2626104_2627133_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.7e-114	62.2
WP_000201498.1\|2627184_2627568_+	hypothetical protein	NA	NA	NA	NA
WP_001204533.1\|2627560_2627914_+\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	1.9e-41	70.1
WP_001538599.1\|2627929_2628463_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	1.1e-56	65.1
WP_000683079.1\|2628459_2628855_+\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	1.5e-58	82.4
WP_001538600.1\|2628862_2629609_+\|tail	phage tail protein	Q687F6	Enterobacteria_phage	1.5e-123	93.4
WP_001299690.1\|2629627_2630059_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.4e-41	67.4
WP_001538601.1\|2630085_2630499_+\|tail	phage tail assembly protein T	S5MDP5	Escherichia_phage	1.6e-42	82.2
WP_001538602.1\|2630479_2633041_+\|tail	phage tail tape measure protein	A0A0K2FI43	Enterobacteria_phage	0.0e+00	90.7
WP_000847298.1\|2633037_2633367_+\|tail	phage tail protein	Q687F2	Enterobacteria_phage	4.3e-59	100.0
WP_001327694.1\|2633366_2634065_+\|tail	phage minor tail protein L	S5M7Q4	Escherichia_phage	7.6e-130	97.0
WP_001351101.1\|2634070_2634814_+\|tail	phage tail protein	Q6H9T4	Enterobacteria_phage	6.1e-146	96.4
WP_171274526.1\|2634759_2635392_+\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	3.5e-102	90.9
WP_001563808.1\|2639489_2640089_+	Ail/Lom family outer membrane beta-barrel protein	H6WZM8	Escherichia_phage	2.0e-107	95.0
WP_032154014.1\|2640153_2642220_+\|tail	prophage tail fiber N-terminal domain-containing protein	A0A1X7QGG5	Escherichia_phage	2.8e-148	62.7
WP_001204582.1\|2642216_2642495_+	hypothetical protein	A0A0E3JSQ1	Enterobacteria_phage	1.0e-21	50.5
WP_000355700.1\|2642504_2642798_+	hypothetical protein	NA	NA	NA	NA
WP_071586406.1\|2642837_2642936_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	1.2e-06	78.1
WP_000937496.1\|2643714_2643981_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	2.3e-18	78.3
WP_001538615.1\|2644212_2645076_-	spermidine/putrescine ABC transporter permease PotB	Q6GZ02	Mycoplasma_phage	5.1e-11	27.8
WP_000531578.1\|2645059_2646196_-	spermidine/putrescine ABC transporter ATP-binding protein PotA	Q6GZ03	Mycoplasma_phage	5.5e-29	39.8
WP_000359446.1\|2646445_2647672_+	peptidase T	NA	NA	NA	NA
WP_001295435.1\|2647720_2648842_-	[50S ribosomal protein L16]-arginine 3-hydroxylase	NA	NA	NA	NA
WP_000735412.1\|2648917_2650378_-	two-component system sensor histidine kinase PhoQ	NA	NA	NA	NA
WP_001265481.1\|2650377_2651049_-	two-component system response regulator PhoP	NA	NA	NA	NA
WP_171274462.1\|2651218_2652589_-	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	4.7e-107	44.6
WP_001298466.1\|2653268_2654375_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_000476093.1\|2654428_2654890_-	phosphatase NudJ	NA	NA	NA	NA
WP_001248679.1\|2654899_2655553_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_001773892.1\|2655724_2656975_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-23	100.0
WP_001556895.1\|2657411_2658929_+	AAA family ATPase	K7PHD1	Enterobacteria_phage	8.1e-145	53.0
WP_001556896.1\|2658928_2659786_+	HNH endonuclease	K7PK19	Enterobacteria_phage	8.3e-54	38.9
WP_001773870.1\|2663733_2664810_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_001538625.1\|2666040_2666742_+	replication protein P	A0A0P0ZD31	Stx2-converting_phage	1.0e-126	98.3
WP_001773871.1\|2666991_2670543_+	inverse autotransporter beta-barrel domain-containing protein	NA	NA	NA	NA
2669005:2669020	attR	NA	NA	NA	NA
WP_000700202.1\|2670579_2671623_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_072093903.1\|2671972_2672074_+	hypothetical protein	NA	NA	NA	NA
WP_001053004.1\|2672070_2672526_+	DNA base-flipping protein YbcN	I6PD71	Cronobacter_phage	1.2e-59	66.9
WP_001538627.1\|2672525_2672696_+	protein ninE	K7P7K0	Enterobacteria_phage	4.1e-13	67.9
WP_000774478.1\|2672688_2672979_+	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	6.7e-48	94.8
WP_001538628.1\|2672975_2673338_+	crossover junction endodeoxyribonuclease RusA	K7PM48	Enterobacteria_phage	2.1e-59	94.9
WP_000971095.1\|2673334_2673475_+	YlcG family protein	K7PHH3	Enterobacteria_phage	1.7e-09	72.1
WP_001204794.1\|2673560_2673944_+	antitermination protein QuuD	A0A088CD47	Shigella_phage	2.0e-55	82.5
WP_000737271.1\|2674132_2675215_-	porin OmpC	Q1MVN1	Enterobacteria_phage	1.6e-166	80.1
WP_000839596.1\|2675805_2676021_+\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	9.0e-34	100.0
WP_050575893.1\|2676200_2679611_+	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	89.9
WP_001538630.1\|2679669_2681730_+\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0E3M194	Enterobacteria_phage	3.3e-125	53.5
WP_000654168.1\|2681726_2682005_+	hypothetical protein	A0A0E3JSQ1	Enterobacteria_phage	7.6e-25	57.6

DBSCAN-SWA_5

2787826 : 2854908

Escherichia_phage(42.62%)

integrase,lysis,capsid,terminase,tail,holin,protease,head

attL 2787663:2787688|attR 2840774:2840799

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2787663:2787688	attL	NA	NA	NA	NA
WP_000113674.1\|2787826_2788957_-\|integrase	phage integrase Arm DNA-binding domain-containing protein	O21940	Phage_21	3.4e-103	51.4
WP_000113189.1\|2788934_2789183_-	excisionase	NA	NA	NA	NA
WP_001090200.1\|2791812_2792004_-	DUF1482 family protein	NA	NA	NA	NA
WP_000449191.1\|2792000_2792189_-	cell division inhibition protein DicB	NA	NA	NA	NA
WP_001351093.1\|2792589_2793027_+	hypothetical protein	NA	NA	NA	NA
WP_016238838.1\|2793004_2793325_-	hypothetical protein	NA	NA	NA	NA
WP_001304608.1\|2793327_2793567_-	hypothetical protein	NA	NA	NA	NA
WP_000379612.1\|2793726_2793882_-	DUF1391 family protein	M4QQ57	Salicola_phage	6.8e-07	51.1
WP_000753626.1\|2794135_2794597_-	helix-turn-helix domain-containing protein	A0A0U2QW76	Escherichia_phage	7.6e-78	99.3
WP_001053425.1\|2794704_2794980_+	helix-turn-helix domain-containing protein	A0A0U2S629	Escherichia_phage	1.1e-39	97.6
WP_000702041.1\|2794963_2795389_+	Rha family transcriptional regulator	NA	NA	NA	NA
WP_001262415.1\|2795460_2796501_+	hypothetical protein	A0A0U2RT81	Escherichia_phage	1.0e-98	89.8
WP_001309414.1\|2796412_2796955_+	hypothetical protein	A0A0U2JGJ0	Escherichia_phage	3.6e-79	90.2
WP_000450708.1\|2796988_2797759_+	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	1.5e-86	68.0
WP_001141099.1\|2797774_2798167_+	DUF977 family protein	A0A088CBK9	Shigella_phage	1.5e-39	63.3
WP_001266130.1\|2798163_2798460_+	DUF4406 domain-containing protein	A0A0U2SAZ1	Escherichia_phage	1.2e-47	95.8
WP_001209475.1\|2798456_2798918_+	ead/Ea22-like family protein	Q8VNQ2	Enterobacteria_phage	2.6e-38	94.0
WP_000403780.1\|2798895_2799195_+	hypothetical protein	A0A2R2Z307	Escherichia_phage	4.3e-50	100.0
WP_001224665.1\|2799347_2799530_+	hypothetical protein	A0A2R2Z308	Escherichia_phage	9.1e-27	98.3
WP_000753053.1\|2799522_2799699_+	hypothetical protein	A0A2R2X2A8	Escherichia_phage	3.3e-26	93.1
WP_001289989.1\|2799695_2800055_+	hypothetical protein	A0A076GCN9	Escherichia_phage	1.7e-37	73.5
WP_000510387.1\|2800055_2800271_+	hypothetical protein	A0A222YWK2	Escherichia_phage	2.2e-35	94.4
WP_001142588.1\|2800272_2800491_+	DUF4014 family protein	A0A1I9LJM2	Stx_converting_phage	3.6e-30	93.1
WP_000224216.1\|2800492_2800756_+	hypothetical protein	A0A2P0P958	Salmonella_phage	3.9e-31	73.6
WP_000207997.1\|2800766_2800934_+	hypothetical protein	A0A192Y6F5	Salmonella_phage	2.1e-14	89.4
WP_000350274.1\|2801041_2801275_+	hypothetical protein	A0A2R2Z2X8	Escherichia_phage	2.8e-36	100.0
WP_000967408.1\|2801509_2801722_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	1.1e-26	94.3
WP_001004956.1\|2801887_2802538_+	hypothetical protein	NA	NA	NA	NA
WP_000401168.1\|2802518_2803622_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_000687431.1\|2803779_2803953_+	hypothetical protein	A0A0U2I1S4	Escherichia_phage	6.8e-16	68.5
WP_001403449.1\|2804012_2804285_+	hypothetical protein	I6PCV7	Cronobacter_phage	1.0e-10	47.5
WP_001265091.1\|2804286_2805333_+	DUF968 domain-containing protein	U5P0K4	Shigella_phage	4.5e-110	55.0
WP_000904114.1\|2805345_2805720_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	1.1e-34	62.7
WP_000762880.1\|2805716_2806538_+	antitermination protein	K7P7B9	Enterobacteria_phage	8.5e-80	60.1
WP_000917768.1\|2806764_2806962_+	hypothetical protein	S5MQK8	Escherichia_phage	6.1e-29	100.0
WP_000935524.1\|2807112_2808171_+	site-specific DNA-methyltransferase	A0A0N7KZF8	Stx2-converting_phage	5.2e-207	98.9
WP_171274528.1\|2808592_2809069_+	tellurite resistance TerB family protein	H6WZJ6	Escherichia_phage	1.9e-63	96.4
WP_000216690.1\|2809065_2809230_+	DUF3927 family protein	H6WZJ7	Escherichia_phage	2.6e-17	100.0
WP_001304601.1\|2812292_2812475_+	DUF1378 family protein	S5MBZ5	Escherichia_phage	4.6e-23	86.7
WP_001304600.1\|2812512_2812758_+	DUF826 domain-containing protein	S5MW40	Escherichia_phage	1.1e-14	87.7
WP_000284510.1\|2812834_2813050_+\|holin	class II holin family protein	G9L6J5	Escherichia_phage	9.0e-34	100.0
WP_000731249.1\|2813054_2813405_+	YdfR family protein	Q08JA0	Stx2-converting_phage	4.0e-55	93.0
WP_000992075.1\|2813468_2814002_+	lysozyme	Q6H9V6	Enterobacteria_phage	1.4e-99	94.9
WP_000459345.1\|2814161_2814299_+	hypothetical protein	Q687G2	Enterobacteria_phage	1.3e-17	97.8
WP_001082534.1\|2814300_2814795_+\|lysis	lysis protein	Q9ZXB6	Enterobacteria_phage	1.1e-74	90.7
WP_000736383.1\|2814791_2815016_+	hypothetical protein	NA	NA	NA	NA
WP_001304598.1\|2815214_2815415_-	YlcI/YnfO family protein	H6WZK6	Escherichia_phage	1.3e-29	97.0
WP_000829186.1\|2815456_2815822_+	HNH endonuclease	B6ETE5	Enterobacteria_phage	1.7e-61	95.0
WP_000958372.1\|2816113_2816677_+\|terminase	terminase small subunit	A0A0P0ZD56	Stx2-converting_phage	3.3e-83	92.5
WP_001304597.1\|2816673_2818335_+\|terminase	terminase large subunit	B6DZ98	Enterobacteria_phage	0.0e+00	98.6
WP_000173054.1\|2818399_2820337_+\|capsid	phage major capsid protein	A0A0P0ZCT9	Stx2-converting_phage	0.0e+00	97.8
WP_001063027.1\|2820381_2820603_+	hypothetical protein	H6WZL1	Escherichia_phage	9.9e-36	98.6
WP_000125984.1\|2823129_2823456_+\|head,tail	phage gp6-like head-tail connector protein	A0A0P0ZDE0	Stx2-converting_phage	5.4e-54	100.0
WP_001007909.1\|2823468_2823819_+\|head	phage head closure protein	A0A0P0ZB28	Stx2-converting_phage	4.6e-59	99.1
WP_000573362.1\|2823815_2824262_+	HK97 gp10 family phage protein	A0A0N7KZI9	Stx2-converting_phage	5.2e-76	99.3
WP_000133388.1\|2824258_2824603_+	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	1.4e-57	100.0
WP_001275433.1\|2824668_2825382_+	immunoglobulin domain-containing protein	A0A0P0ZDV1	Stx2-converting_phage	2.3e-126	99.6
WP_000710952.1\|2825399_2825774_+\|tail	tail assembly protein	A0A0P0ZE84	Stx2-converting_phage	4.6e-65	100.0
WP_001538679.1\|2825869_2826079_+	DUF4035 domain-containing protein	H6WZM0	Escherichia_phage	2.0e-33	98.6
WP_000212987.1\|2826126_2829369_+\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	0.0e+00	89.0
WP_000807940.1\|2829361_2829703_+\|tail	phage tail protein	A0A0P0ZBQ8	Stx2-converting_phage	4.7e-61	97.3
WP_021524657.1\|2829702_2830401_+\|tail	phage minor tail protein L	H6WZM3	Escherichia_phage	1.9e-128	96.1
WP_032300536.1\|2831098_2831731_+\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	4.2e-103	91.8
WP_171274465.1\|2832074_2835767_+	DUF1983 domain-containing protein	A0A0P0ZCI5	Stx2-converting_phage	0.0e+00	85.8
WP_016238842.1\|2835834_2836434_+	Ail/Lom family outer membrane beta-barrel protein	H6WZM8	Escherichia_phage	1.0e-106	94.0
WP_171274466.1\|2837443_2838475_+\|tail	phage tail protein	A0A1X7QGG5	Escherichia_phage	6.8e-103	58.8
WP_001204581.1\|2838646_2838925_+	hypothetical protein	A0A0E3JSQ1	Enterobacteria_phage	6.0e-22	50.5
WP_000355614.1\|2838934_2839231_+	hypothetical protein	NA	NA	NA	NA
WP_001304590.1\|2839348_2839681_-	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_001304589.1\|2839866_2840319_+	VapA/VapB family virulence-associated protein	NA	NA	NA	NA
WP_001357405.1\|2840946_2841753_-	tryptophan synthase subunit alpha	NA	NA	NA	NA
2840774:2840799	attR	NA	NA	NA	NA
WP_000209513.1\|2841752_2842946_-	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_001538690.1\|2842957_2844316_-	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	A0A0P0IR83	Acinetobacter_phage	3.0e-37	41.2
WP_000763537.1\|2844319_2845915_-	bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD	A0A0N7IRD9	Acinetobacter_phage	1.7e-52	38.5
WP_001538691.1\|2845914_2847477_-	anthranilate synthase component I	NA	NA	NA	NA
WP_001700591.1\|2847568_2847613_-	trp operon leader peptide	NA	NA	NA	NA
WP_001538692.1\|2847750_2848632_+	5'-3' exoribonuclease	NA	NA	NA	NA
WP_001295575.1\|2848628_2849249_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
WP_024186832.1\|2849276_2851166_+	DUF2207 domain-containing protein	NA	NA	NA	NA
WP_001291206.1\|2851378_2852254_+	23S rRNA pseudouridine(2605) synthase RluB	NA	NA	NA	NA
WP_001278898.1\|2852293_2852884_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_000559258.1\|2852880_2853639_-	YciK family oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	9.7e-06	23.4
WP_000422063.1\|2853858_2854908_+\|protease	protease SohB	A0A2H4UUF9	Bodo_saltans_virus	1.3e-21	31.5

DBSCAN-SWA_6

3107911 : 3120664

uncultured_Caudovirales_phage(88.89%)

terminase,capsid,tail,portal,protease,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001538780.1\|3107911_3108733_+\|protease	serine protease	NA	NA	NA	NA
WP_000046661.1\|3108771_3109101_-	multidrug/spermidine efflux SMR transporter subunit MdtI	NA	NA	NA	NA
WP_001538781.1\|3109087_3109453_-	multidrug/spermidine efflux SMR transporter subunit MdtJ	NA	NA	NA	NA
WP_000133423.1\|3110727_3111009_-	hypothetical protein	NA	NA	NA	NA
WP_001560954.1\|3111022_3112684_-\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	8.9e-278	81.7
WP_000113645.1\|3112667_3113024_-\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	9.4e-52	81.4
WP_000174068.1\|3113146_3113329_-	hypothetical protein	NA	NA	NA	NA
WP_001145905.1\|3113312_3113753_-	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	2.5e-62	72.6
WP_000134109.1\|3113752_3114049_-\|head,tail	phage head-tail connector protein	A0A2H4JD08	uncultured_Caudovirales_phage	6.9e-32	64.3
WP_001020662.1\|3114045_3114384_-\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	1.7e-31	52.7
WP_000267605.1\|3114380_3115592_-\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	1.9e-189	79.5
WP_000504056.1\|3115593_3116166_-\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	3.6e-61	63.0
WP_001137337.1\|3116205_3117363_-\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	1.3e-137	64.9
WP_000233313.1\|3117650_3117923_-	PerC family transcriptional regulator	NA	NA	NA	NA
WP_000126693.1\|3117935_3118346_-	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_000557476.1\|3118342_3118621_-	hypothetical protein	NA	NA	NA	NA
WP_000761836.1\|3118909_3120664_-	DNA primase	Q7M2A8	Enterobacteria_phage	3.2e-92	40.0

DBSCAN-SWA_7

3619818 : 3626130

Enterobacteria_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001557076.1\|3619818_3620370_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	2.3e-49	57.9
WP_001681957.1\|3620374_3621253_-	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	5.6e-106	63.8
WP_001023638.1\|3621310_3622210_-	dTDP-4-dehydrorhamnose reductase	I7HXC9	Enterobacteria_phage	1.7e-28	34.8
WP_001557078.1\|3622209_3623295_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.3e-101	53.6
WP_001773992.1\|3623667_3624561_-	UTP--glucose-1-phosphate uridylyltransferase GalF	A0A127AW70	Bacillus_phage	2.3e-46	42.0
WP_001557079.1\|3624735_3626130_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	1.8e-18	31.9

DBSCAN-SWA_8

3716065 : 3725510

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001538973.1\|3716065_3717202_+	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	4.2e-162	97.4
WP_001538974.1\|3717198_3719202_+	SWIM zinc finger family protein	Q9EYF6	Enterobacteria_phage	0.0e+00	95.7
WP_001296231.1\|3719326_3719788_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	3.2e-76	99.3
WP_001295430.1\|3719828_3720299_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
WP_000598641.1\|3720345_3721065_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001538977.1\|3721061_3722747_-	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	1.6e-303	99.5
WP_001240405.1\|3722968_3723700_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	2.2e-111	99.0
WP_001216963.1\|3723759_3723867_+	protein YohO	NA	NA	NA	NA
WP_001538978.1\|3723847_3724579_-	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_001538980.1\|3724583_3725510_-	glycine betaine ABC transporter ATP binding protein YehX	F2Y1V5	Organic_Lake_phycodnavirus	2.6e-08	26.8

DBSCAN-SWA_9

4094875 : 4140488

Escherichia_phage(56.25%)

tail,holin,integrase,terminase

attL 4116206:4116223|attR 4147421:4147438

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000017558.1\|4094875_4095028_-	hypothetical protein	G9L6F3	Escherichia_phage	1.9e-17	92.0
WP_000076001.1\|4095045_4095237_+	DUF2633 family protein	G9L6F2	Escherichia_phage	7.3e-27	100.0
WP_001311989.1\|4095547_4096066_+	glycine zipper 2TM domain-containing protein	G9L6F1	Escherichia_phage	2.9e-62	99.4
WP_001774017.1\|4096081_4096621_+	DUF5384 family protein	G9L6F0	Escherichia_phage	5.1e-41	96.6
WP_000637727.1\|4096815_4097313_-	DUF2514 family protein	A0A193GYU6	Enterobacter_phage	1.0e-48	66.5
WP_032153852.1\|4097309_4097939_-	glycoside hydrolase family 19 protein	A0A0F6R8M1	Escherichia_coli_O157_typing_phage	1.7e-112	97.6
WP_016245479.1\|4097928_4098237_-\|holin	phage holin family protein	G9L6E7	Escherichia_phage	4.6e-47	94.1
WP_000009883.1\|4098223_4098628_-	hypothetical protein	G9L6E6	Escherichia_phage	3.9e-62	95.5
WP_032153853.1\|4098700_4101163_-\|tail	tail fiber domain-containing protein	O09496	Escherichia_virus	3.3e-164	48.8
WP_016245482.1\|4101359_4101617_+	hypothetical protein	A0A0F6R8M4	Escherichia_coli_O157_typing_phage	6.3e-42	97.6
WP_000993735.1\|4101934_4102591_+	phage antirepressor Ant	A0A1U9AJ93	Stx1_converting_phage	4.3e-50	52.2
WP_000708858.1\|4102662_4102824_-	hypothetical protein	G9L6D9	Escherichia_phage	2.5e-20	100.0
WP_001260052.1\|4102922_4103555_-	hypothetical protein	NA	NA	NA	NA
WP_000127505.1\|4103701_4104397_-	hypothetical protein	G9L6E2	Escherichia_phage	5.4e-128	100.0
WP_001555166.1\|4105176_4105473_-	hypothetical protein	NA	NA	NA	NA
WP_032153854.1\|4105550_4106399_-	hypothetical protein	NA	NA	NA	NA
WP_032153855.1\|4106400_4109790_-	hypothetical protein	A0A1E1GEP2	Vibrio_phage	3.4e-183	36.8
WP_032153984.1\|4109789_4112537_-	bacteriophage protein	A0A193GYI3	Enterobacter_phage	8.1e-119	43.8
WP_001555169.1\|4112536_4113103_-	hypothetical protein	A0A193GYJ4	Enterobacter_phage	1.5e-59	81.5
WP_000568023.1\|4113102_4113567_-	hypothetical protein	G9L6D1	Escherichia_phage	8.4e-85	100.0
WP_000179264.1\|4116038_4116644_-	hypothetical protein	A0A0F6TJN5	Escherichia_coli_O157_typing_phage	6.2e-112	99.5
4116206:4116223	attL	NA	NA	NA	NA
WP_000424495.1\|4116643_4116967_-	hypothetical protein	A0A0F6R8M8	Escherichia_coli_O157_typing_phage	2.6e-53	98.1
WP_032153857.1\|4117017_4117353_-	hypothetical protein	G9L6C7	Escherichia_phage	5.0e-55	99.1
WP_032153858.1\|4117363_4117801_-	hypothetical protein	G9L6C6	Escherichia_phage	5.0e-71	95.2
WP_000268715.1\|4117852_4118839_-	hypothetical protein	G9L6C5	Escherichia_phage	1.5e-187	100.0
WP_032153859.1\|4118853_4119549_-	peptidase	G9L6C4	Escherichia_phage	8.7e-94	98.3
WP_021517651.1\|4119551_4119848_-	hypothetical protein	G9L6C3	Escherichia_phage	3.7e-46	99.0
WP_000852419.1\|4119844_4121524_-\|tail	tail protein	G9L6C2	Escherichia_phage	3.6e-303	99.5
WP_000335899.1\|4121538_4121745_-	hypothetical protein	G9L6C1	Escherichia_phage	6.0e-11	100.0
WP_001600316.1\|4122447_4122870_+	hypothetical protein	NA	NA	NA	NA
WP_032153863.1\|4122913_4124389_-	hypothetical protein	A0A0F6TK57	Escherichia_coli_O157_typing_phage	2.2e-296	99.2
WP_001090112.1\|4124385_4125060_-\|terminase	terminase small subunit	Q287B7	Escherichia_phage	3.4e-119	99.6
WP_016235741.1\|4125100_4125439_-	hypothetical protein	A0A0F6TJR3	Escherichia_coli_O157_typing_phage	6.4e-58	98.2
WP_016235742.1\|4125431_4125713_-	ASCH domain-containing protein	A0A077SLL0	Escherichia_phage	1.1e-47	97.8
WP_032153864.1\|4125705_4126479_-	DUF551 domain-containing protein	K7P7E4	Enterobacteria_phage	2.0e-51	47.7
WP_000753053.1\|4126835_4127012_-	hypothetical protein	A0A2R2X2A8	Escherichia_phage	3.3e-26	93.1
WP_001224665.1\|4127004_4127187_-	hypothetical protein	A0A2R2Z308	Escherichia_phage	9.1e-27	98.3
WP_001018057.1\|4127759_4128050_-	DUF4752 family protein	A0A2I6TCB0	Escherichia_phage	1.2e-36	82.3
WP_032153869.1\|4128046_4128610_-	hypothetical protein	A0A0F6TJR7	Escherichia_coli_O157_typing_phage	9.0e-65	74.2
WP_032153870.1\|4128671_4129016_-	DUF1064 domain-containing protein	A0A0F6R8N5	Escherichia_coli_O157_typing_phage	6.9e-60	96.5
WP_000843279.1\|4129133_4129910_-	hypothetical protein	G9L6A9	Escherichia_phage	4.6e-152	100.0
WP_001282459.1\|4131054_4131285_-	hypothetical protein	G9L6A7	Escherichia_phage	2.6e-39	100.0
WP_000836290.1\|4131439_4132024_+	helix-turn-helix transcriptional regulator	A0A0F6R8L7	Escherichia_coli_O157_typing_phage	7.0e-105	100.0
WP_001198620.1\|4132177_4132330_+	hypothetical protein	G9L6A5	Escherichia_phage	5.4e-25	100.0
WP_001102251.1\|4132332_4132632_+	hypothetical protein	A0A0F6R7M4	Escherichia_coli_O157_typing_phage	4.9e-46	97.0
WP_032153871.1\|4132628_4133450_+	PD-(D/E)XK nuclease-like domain-containing protein	A0A2R9YJH7	Escherichia_phage	5.2e-162	98.5
WP_001617197.1\|4133446_4134388_+	recombinase RecT	A0A0F6TJP0	Escherichia_coli_O157_typing_phage	1.0e-177	99.7
WP_000675390.1\|4134437_4134686_+	AlpA family phage regulatory protein	A0A0F6TJ45	Escherichia_coli_O157_typing_phage	3.6e-42	100.0
WP_001550170.1\|4134843_4135095_+	PerC family transcriptional regulator	G9L6A0	Escherichia_phage	5.8e-40	95.2
WP_001617200.1\|4135734_4135929_+	DUF1382 family protein	G9L698	Escherichia_phage	1.4e-25	95.3
WP_001617201.1\|4135932_4137183_-\|integrase	site-specific integrase	A0A0F6TJM5	Escherichia_coli_O157_typing_phage	8.0e-239	99.0
WP_000138282.1\|4137375_4138953_-	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
WP_001296289.1\|4139021_4140488_-	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	8.8e-88	38.9
4147421:4147438	attR	NA	NA	NA	NA

DBSCAN-SWA_10

4275063 : 4281887

Enterobacteria_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001430678.1\|4275063_4275636_-	phage polarity suppression family protein	Q7M2A1	Enterobacteria_phage	1.4e-94	96.8
WP_001774020.1\|4275709_4276210_-	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_001392508.1\|4276206_4276941_-	hypothetical protein	Q7M2A2	Enterobacteria_phage	6.1e-130	98.8
WP_001149160.1\|4277494_4277761_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	4.9e-45	100.0
WP_171274499.1\|4277941_4278355_+	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	4.6e-50	80.3
WP_001244665.1\|4278347_4278635_+	hypothetical protein	Q7M2A0	Enterobacteria_phage	8.6e-48	97.9
WP_000459295.1\|4278627_4279083_+	hypothetical protein	Q7M298	Enterobacteria_phage	1.6e-64	99.1
WP_000856729.1\|4279218_4279539_+	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_001774022.1\|4279553_4281887_+	toprim domain-containing protein	Q7M2A8	Enterobacteria_phage	0.0e+00	98.7

DBSCAN-SWA_11

4354624 : 4361764

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001539446.1\|4354624_4357186_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	6.0e-31	20.7
WP_001141302.1\|4357291_4357948_+	protein-serine/threonine phosphatase	A0A077SLQ6	Escherichia_phage	1.1e-50	46.6
WP_001298167.1\|4357998_4358766_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	2.2e-69	57.4
WP_000847997.1\|4358961_4359870_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	1.5e-117	76.5
WP_001539448.1\|4359866_4361129_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	2.2e-135	61.4
WP_001279001.1\|4361125_4361764_+	aldolase	A0A077SK32	Escherichia_phage	2.8e-83	75.0

DBSCAN-SWA_12

4633792 : 4713988

Caulobacter_phage(20.0%)

transposase,integrase

attL 4666053:4666070|attR 4719674:4719691

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000654298.1\|4633792_4634863_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_000938200.1\|4634878_4636471_-	TraI domain-containing protein	NA	NA	NA	NA
WP_012368427.1\|4636646_4636973_-	hypothetical protein	NA	NA	NA	NA
WP_004245726.1\|4637116_4638118_-	DUF1281 domain-containing protein	NA	NA	NA	NA
WP_001038587.1\|4638202_4638502_-	hypothetical protein	NA	NA	NA	NA
WP_012368428.1\|4638511_4639486_-	DUF1738 domain-containing protein	A0A1V0EEV1	Caulobacter_phage	2.1e-45	37.5
WP_004239680.1\|4639638_4640286_-	hypothetical protein	NA	NA	NA	NA
WP_000542402.1\|4640285_4640798_-	hypothetical protein	NA	NA	NA	NA
WP_004239684.1\|4640908_4641265_-	hypothetical protein	NA	NA	NA	NA
WP_000639097.1\|4641362_4641785_-	hypothetical protein	NA	NA	NA	NA
WP_000171971.1\|4641951_4642269_-	hypothetical protein	NA	NA	NA	NA
WP_004239688.1\|4642350_4642626_-	hypothetical protein	NA	NA	NA	NA
WP_000861660.1\|4643061_4643673_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA
WP_004252296.1\|4643680_4644589_-\|integrase	integrase domain-containing protein	NA	NA	NA	NA
WP_004245739.1\|4645631_4645871_-	hypothetical protein	NA	NA	NA	NA
WP_004239694.1\|4646512_4646920_+	DUF3742 family protein	NA	NA	NA	NA
WP_000988923.1\|4646962_4648477_-	conjugal transfer protein TraG N-terminal domain-containing protein	NA	NA	NA	NA
WP_000160224.1\|4648473_4648812_-	hypothetical protein	NA	NA	NA	NA
WP_000973818.1\|4648812_4650255_-	integrating conjugative element protein	NA	NA	NA	NA
WP_036972223.1\|4650269_4651244_-	TIGR03756 family integrating conjugative element protein	NA	NA	NA	NA
WP_036972221.1\|4651240_4651681_-	TIGR03757 family integrating conjugative element protein	NA	NA	NA	NA
WP_171274507.1\|4651759_4653991_-	trimeric autotransporter adhesin TaaP	NA	NA	NA	NA
WP_004245744.1\|4656953_4657391_-	TIGR03751 family conjugal transfer lipoprotein	NA	NA	NA	NA
WP_004239705.1\|4657387_4657873_-	hypothetical protein	NA	NA	NA	NA
WP_004239706.1\|4657869_4659366_-	TIGR03752 family integrating conjugative element protein	NA	NA	NA	NA
WP_171274508.1\|4659362_4660259_-	TIGR03749 family integrating conjugative element protein	NA	NA	NA	NA
WP_000033152.1\|4660255_4660900_-	TIGR03746 family integrating conjugative element protein	NA	NA	NA	NA
WP_004239708.1\|4660892_4661309_-	TIGR03750 family conjugal transfer protein	NA	NA	NA	NA
WP_171274530.1\|4661321_4661705_-	TIGR03745 family integrating conjugative element membrane protein	NA	NA	NA	NA
WP_001070025.1\|4661731_4661971_-	TIGR03758 family integrating conjugative element protein	NA	NA	NA	NA
WP_001236300.1\|4661967_4662294_-	hypothetical protein	NA	NA	NA	NA
WP_004239713.1\|4662440_4663049_+	DUF2913 family protein	NA	NA	NA	NA
WP_000179437.1\|4663136_4663886_-	TIGR03747 family integrating conjugative element membrane protein	NA	NA	NA	NA
WP_012368437.1\|4663872_4666020_-	type IV conjugative transfer system coupling protein TraD	NA	NA	NA	NA
4666053:4666070	attL	NA	NA	NA	NA
WP_004245750.1\|4666375_4666930_-	integrating conjugative element protein	NA	NA	NA	NA
WP_004239718.1\|4666919_4667558_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA
WP_000790124.1\|4667570_4668305_-	TIGR03759 family integrating conjugative element protein	NA	NA	NA	NA
WP_000149725.1\|4668318_4669059_-	hypothetical protein	NA	NA	NA	NA
WP_004239720.1\|4669055_4669718_-	conjugal transfer protein	NA	NA	NA	NA
WP_000428182.1\|4670484_4672473_-	TonB-dependent receptor	NA	NA	NA	NA
WP_017827831.1\|4680862_4690078_+	type I polyketide synthase	D0R7J2	Paenibacillus_phage	1.0e-48	39.7
WP_000801189.1\|4690077_4691166_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_004239723.1\|4691165_4691939_+	thioesterase	NA	NA	NA	NA
WP_171274509.1\|4691957_4693724_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	4.0e-34	25.8
WP_000200567.1\|4697424_4697613_+	AlpA family transcriptional regulator	NA	NA	NA	NA
WP_004239726.1\|4698934_4699999_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_004239729.1\|4702116_4704486_-	TonB-dependent receptor	NA	NA	NA	NA
WP_004239730.1\|4706880_4707237_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_077788456.1\|4707495_4707693_+	hypothetical protein	NA	NA	NA	NA
WP_001351058.1\|4707895_4708132_-	DUF417 family protein	NA	NA	NA	NA
WP_071550302.1\|4708037_4708256_-	hypothetical protein	NA	NA	NA	NA
WP_004245764.1\|4708339_4708801_-	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_032216024.1\|4709155_4710136_-\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	3.0e-185	99.1
WP_000669584.1\|4710337_4710748_-	fimbrial protein	NA	NA	NA	NA
WP_105874332.1\|4711594_4711651_+	hypothetical protein	NA	NA	NA	NA
WP_004239731.1\|4711963_4712275_+	ornithine decarboxylase	NA	NA	NA	NA
WP_171274510.1\|4713064_4713988_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	Q2A0A7	Sodalis_phage	3.3e-56	44.3
4719674:4719691	attR	NA	NA	NA	NA

DBSCAN-SWA_13

4727507 : 4802328

Shigella_phage(28.57%)

transposase,protease,integrase,lysis

attL 4721877:4721893|attR 4762442:4762458

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4721877:4721893	attL	NA	NA	NA	NA
WP_001218869.1\|4727507_4728773_+\|integrase	integrase arm-type DNA-binding domain-containing protein	Q7M297	Enterobacteria_phage	2.1e-77	38.1
WP_001774069.1\|4731763_4732315_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_001296368.1\|4734817_4735039_+	pap operon regulatory protein PapI	NA	NA	NA	NA
WP_001513409.1\|4736906_4737020_-\|lysis	lysis protein	NA	NA	NA	NA
WP_001110186.1\|4738853_4739114_+	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_000109147.1\|4739155_4739716_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_001296373.1\|4739755_4740184_+	DUF417 family protein	NA	NA	NA	NA
WP_103103190.1\|4740892_4742120_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	1.2e-170	95.3
WP_000074477.1\|4742233_4743427_-	MFS transporter	NA	NA	NA	NA
WP_001296374.1\|4743562_4745287_+	aerobactin synthase IucA	NA	NA	NA	NA
WP_001287500.1\|4745287_4746235_+	N(6)-hydroxylysine O-acetyltransferase	NA	NA	NA	NA
WP_001015715.1\|4746234_4747977_+	aerobactin synthase IucC	NA	NA	NA	NA
WP_000750130.1\|4747973_4749251_+	NADPH-dependent L-lysine N(6)-monooxygenase	NA	NA	NA	NA
WP_171274511.1\|4749332_4751534_+	ferric aerobactin receptor IutA	NA	NA	NA	NA
WP_011076574.1\|4752084_4752228_-	hypothetical protein	NA	NA	NA	NA
WP_000266542.1\|4760861_4761077_-	hypothetical protein	NA	NA	NA	NA
WP_001521284.1\|4761080_4761449_-	hypothetical protein	NA	NA	NA	NA
WP_001296383.1\|4761739_4761982_-	hypothetical protein	NA	NA	NA	NA
WP_085949836.1\|4762614_4763827_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	4.7e-103	58.4
4762442:4762458	attR	NA	NA	NA	NA
WP_001223343.1\|4764104_4766195_-	bifunctional siderophore receptor/adhesin Iha	A0A0P0I887	Acinetobacter_phage	2.6e-08	31.5
WP_096974168.1\|4766529_4767685_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	1.8e-67	44.7
WP_000729638.1\|4767862_4768018_+	hypothetical protein	NA	NA	NA	NA
WP_001296394.1\|4768827_4769811_+	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	6.2e-37	31.7
WP_000905924.1\|4769882_4771031_+	capsule polysaccharide transporter	NA	NA	NA	NA
WP_001298258.1\|4771054_4772731_+	polysialic acid transporter KpsD	NA	NA	NA	NA
WP_000030745.1\|4772740_4773481_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA
WP_000579517.1\|4773477_4775505_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA
WP_001161835.1\|4775539_4776745_+	capsular biosynthesis protein	NA	NA	NA	NA
WP_171274512.1\|4778183_4778663_-	hypothetical protein	NA	NA	NA	NA
WP_000723250.1\|4779251_4780427_-	UDP-N-acetylglucosamine 2-epimerase (hydrolyzing)	NA	NA	NA	NA
WP_000038461.1\|4782714_4783338_-	acetyltransferase	NA	NA	NA	NA
WP_000590258.1\|4783387_4784047_-	ABC transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	2.9e-06	25.7
WP_000124301.1\|4784043_4784820_-	ABC transporter permease	NA	NA	NA	NA
WP_000942826.1\|4785878_4786415_-	GspM family type II secretion system protein YghD	NA	NA	NA	NA
WP_000097240.1\|4786416_4787595_-	type II secretion system protein GspL	NA	NA	NA	NA
WP_000633240.1\|4787591_4788569_-	type II secretion system minor pseudopilin GspK	NA	NA	NA	NA
WP_001254776.1\|4788565_4789171_-	type II secretion system minor pseudopilin GspJ	NA	NA	NA	NA
WP_000820092.1\|4789167_4789539_-	type II secretion system minor pseudopilin GspI	NA	NA	NA	NA
WP_001087296.1\|4790101_4790557_-	type II secretion system major pseudopilin GspG	NA	NA	NA	NA
WP_001173425.1\|4790573_4791797_-	type II secretion system inner membrane protein GspF	NA	NA	NA	NA
WP_000249375.1\|4791796_4793290_-	type II secretion system ATPase GspE	NA	NA	NA	NA
WP_171274513.1\|4793289_4795350_-	type II secretion system secretin GspD	NA	NA	NA	NA
WP_001305091.1\|4795379_4796339_-	type II secretion system protein GspC	NA	NA	NA	NA
WP_001305092.1\|4796356_4796767_-	type II secretion system pilot lipoprotein GspS-beta	NA	NA	NA	NA
WP_001335851.1\|4796832_4797642_-	prepilin peptidase PppA	NA	NA	NA	NA
WP_001774042.1\|4797771_4802328_-\|protease	lipoprotein metalloprotease SslE	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP053252

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP053251

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection