CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP040010	TM7 phylum sp. oral taxon 488 strain CM003 chromosome, complete genome	2 crisprs	cas2,cas1,cas9,DEDDh	0	7	0	0

1. NZ_CP040010

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040010_1

• CRISPR_ID: NZ_CP040010_1
• CRISPR_location: 170896-170971
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP040010_1

Consensus_repeat	Method
ACGGAACCGTCAATGGTGATGTCTA	CRISPRCasFinder

spacers of NZ_CP040010_1

>1.1|170921|26|NZ_CP040010|CRISPRCasFinder
CTGTGTGGCTCAAGACGTTTTCATCA

CRISPR arrays and Neighbor proteins around NZ_CP040010_1

CRISPR arrays

The CRISPR arrays of NZ_CP040010_1

>merge|NZ_CP040010|1|170896-170971|CRISPRCasFinder
ACGGAACCGTCAATGGTGATGTCTACTGTGTGGCTCAAGACGTTTTCATCAACGGAACCGTCAATGGTGATGTTAT

>NZ_CP040010|1|1|170896-170971|CRISPRCasFinder
ACGGAACCGTCAATGGTGATGTCTA	CTGTGTGGCTCAAGACGTTTTCATCA
ACGGAACCGTCAATGGTGATGTTAT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040010.1|WP_138059371.1|172236_172482_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040010.1|WP_171270293.1|166849_167689_+|glutamate-racemase	unknown	unknown	gnl|CDD|234851
NZ_CP040010.1|WP_162322320.1|161920_162685_+|type-I-methionyl-aminopeptidase	unknown	unknown	gnl|CDD|238519
NZ_CP040010.1|WP_171270299.1|177804_178956_+|trypsin-like-peptidase-domain-containing-protein	unknown	unknown	gnl|CDD|273938
NZ_CP040010.1|WP_171270296.1|172945_173710_+|ParA-family-protein	unknown	unknown	gnl|CDD|379293
NZ_CP040010.1|WP_138059370.1|171922_172093_+|PspC-domain-containing-protein	unknown	unknown	gnl|CDD|377200
NZ_CP040010.1|WP_171270292.1|165967_166576_+|vitamin-K-epoxide-reductase-family-protein	unknown	unknown	gnl|CDD|240605
NZ_CP040010.1|WP_171270287.1|160906_161362_+|GatB/YqeY-domain-containing-protein	unknown	unknown	gnl|CDD|370480
NZ_CP040010.1|WP_138059364.1|165252_165702_+|transcriptional-repressor-NrdR	unknown	unknown	gnl|CDD|234774
NZ_CP040010.1|WP_171270291.1|165708_165984_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040010.1|WP_171270294.1|167772_170649_+|isoleucine--tRNA-ligase	unknown	unknown	gnl|CDD|235681
NZ_CP040010.1|WP_138059372.1|172550_172856_+|50S-ribosomal-protein-L21	unknown	unknown	gnl|CDD|376395
NZ_CP040010.1|WP_171270300.1|178948_179770_-|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	unknown	unknown	gnl|CDD|274634
NZ_CP040010.1|WP_171270290.1|164033_165227_+|cell-division-protein-FtsZ	unknown	unknown	gnl|CDD|236468
NZ_CP040010.1|WP_171270289.1|162720_163956_+|cell-division-protein-FtsA	unknown	unknown	gnl|CDD|223918
NZ_CP040010.1|WP_138059375.1|174596_175205_-|signal-peptidase-I	unknown	unknown	gnl|CDD|274044
NZ_CP040010.1|WP_171270288.1|161381_161933_+|nucleoside-monophosphate-kinase	unknown	unknown	gnl|CDD|234711
NZ_CP040010.1|WP_171270297.1|173699_174587_+|ParB/RepB/Spo0J-family-partition-protein	unknown	unknown	gnl|CDD|275105
NZ_CP040010.1|WP_138059377.1|176990_177776_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040010.1|WP_171270298.1|175301_176969_+|LCP-family-protein	unknown	unknown	gnl|CDD|224235

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP040010.1|WP_171270293.1|166849_167689_+|glutamate-racemase	gnl|CDD|234851	PRK00865, PRK00865, glutamate racemase; Provisional.	1.12153e-82
NZ_CP040010.1|WP_162322320.1|161920_162685_+|type-I-methionyl-aminopeptidase	gnl|CDD|238519	cd01086, MetAP1, Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.	7.88561e-94
NZ_CP040010.1|WP_171270299.1|177804_178956_+|trypsin-like-peptidase-domain-containing-protein	gnl|CDD|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	1.80666e-92
NZ_CP040010.1|WP_171270296.1|172945_173710_+|ParA-family-protein	gnl|CDD|379293	pfam13614, AAA_31, AAA domain. This family includes a wide variety of AAA domains including some that have lost essential nucleotide binding residues in the P-loop.	5.08746e-82
NZ_CP040010.1|WP_138059370.1|171922_172093_+|PspC-domain-containing-protein	gnl|CDD|377200	pfam04024, PspC, PspC domain. This family includes Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.	3.23473e-19
NZ_CP040010.1|WP_171270292.1|165967_166576_+|vitamin-K-epoxide-reductase-family-protein	gnl|CDD|240605	cd12922, VKOR_5, Vitamin K epoxide reductase family in bacteria. This family includes vitamin K epoxide reductase (VKOR) mostly present in actinobacteria. VKOR (also named VKORC1) is an integral membrane protein that catalyzes the reduction of vitamin K 2,3-epoxide and vitamin K to vitamin K hydroquinone, an essential co-factor subsequently used in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes. All homologs of VKOR contain an active site CXXC motif, which is switched between reduced and disulfide-bonded states during the reaction cycle. In some bacterial homologs, the VKOR domain is fused with domains of the thioredoxin family of oxidoreductases which may function as redox partners in initiating the reduction cascade.	5.35055e-39
NZ_CP040010.1|WP_171270287.1|160906_161362_+|GatB/YqeY-domain-containing-protein	gnl|CDD|370480	pfam09424, YqeY, Yqey-like protein. The function of this domain found in the YqeY protein is uncertain.	9.47148e-41
NZ_CP040010.1|WP_171270294.1|167772_170649_+|isoleucine--tRNA-ligase	gnl|CDD|235681	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed.	0
NZ_CP040010.1|WP_138059372.1|172550_172856_+|50S-ribosomal-protein-L21	gnl|CDD|376395	pfam00829, Ribosomal_L21p, Ribosomal prokaryotic L21 protein.	2.08365e-25
NZ_CP040010.1|WP_171270300.1|178948_179770_-|peptide-chain-release-factor-N(5)-glutamine-methyltransferase	gnl|CDD|274634	TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. [Protein fate, Protein modification and repair].	2.77035e-75
NZ_CP040010.1|WP_138059364.1|165252_165702_+|transcriptional-repressor-NrdR	gnl|CDD|234774	PRK00464, nrdR, transcriptional repressor NrdR.	1.34004e-53
NZ_CP040010.1|WP_171270289.1|162720_163956_+|cell-division-protein-FtsA	gnl|CDD|223918	COG0849, ftsA, Cell division ATPase FtsA [Cell division and chromosome partitioning].	5.15802e-105
NZ_CP040010.1|WP_138059375.1|174596_175205_-|signal-peptidase-I	gnl|CDD|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	2.44234e-29
NZ_CP040010.1|WP_171270288.1|161381_161933_+|nucleoside-monophosphate-kinase	gnl|CDD|234711	PRK00279, adk, adenylate kinase; Reviewed.	4.14528e-37
NZ_CP040010.1|WP_171270297.1|173699_174587_+|ParB/RepB/Spo0J-family-partition-protein	gnl|CDD|275105	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein. This model describes nucleoid occlusion protein, a close homolog to ParB chromosome partitioning proteins including Spo0J in Bacillus subtilis. Its gene often is located near the gene for the Spo0J ortholog. This protein bind a specific DNA sequence and blocks cytokinesis from happening until chromosome segregation is complete.	4.54822e-65
NZ_CP040010.1|WP_171270290.1|164033_165227_+|cell-division-protein-FtsZ	gnl|CDD|236468	PRK09330, PRK09330, cell division protein FtsZ; Validated.	0
NZ_CP040010.1|WP_171270298.1|175301_176969_+|LCP-family-protein	gnl|CDD|224235	COG1316, LytR, Transcriptional regulator [Transcription].	1.634e-29

Protein sequences

>NZ_CP040010.1|WP_171270294.1|167772_170649_+|isoleucine--tRNA-ligase
MKFQANSRRRALEYEKDWAKRWSKDKTFEKSVKQRPADRQWVFYDGPPFLTGTPHHGHLLVSTVKDAMGRFHTMRGQRVERRWGWDCHGLPAEVFVEKQLGIANKKEIGTKISIEDYVRECRTAMVKTGTEWEDTIDRLGRWVEFKGAYKTMDKEFMESVWWAFKTLYEKGKIYEGEKILVYCTKDATPISKSEVAMENSYQMDTDPSVFVYFKLEDCDEYMLAWTTTPWTLPANTSVAINPEAEYSLIEHGDKKFYVASKALSRVMQDAKHQPLDYTVIKKIKGSELIGRRYEPLFINRGPEAHRVLSAEFVTTDDGTGIVHQAPAYGEDDYELCKANGVPVESIVDGNGNYTEGPWLGRNIWEVNKEIAKSLVEEGRALKIEYIRHEYPHCHRCGTKLMYRAHPSWFMDIQSQKDEMLKANEETRWTPDNLRTGRFKNIIEQAPDWNLSRDRYWATPIPVWKGVRNDGTELVKVIGSYKEFAELTGRELDDYHLPEVINVTFELDGVTMRHIGKVLDCWFESGSMSFAQFHYPFENKEKFEKSFPADFIIEAIDQTRGWFYSLMAVNVGLFGRAPWKNLICTGFINAADGKKMSKKLKNYTDPMELMDQYSADSFRMLMLSSPLTNGENFALVDKDVGNIARKLSMIWNMYDFFTMYAEVDGWEFDSKRPFTLYPDDLSNPLDKWIVSRVHELAGEIDRHMEAYDLQGATRPIVPFLDDASNWYVRRSRRRFWKSEDDNDKSDAYRTLHYVLLKLSVILAPFVPFLAEELYQKLGGGEESVHLLSWPTNYAVDESEIERMRIAREIINEGLSQRASVGIKVRQPIPSLTYTYKKLDSYYEQIIAEEVNVKQVAHRCSDDCEVQLDVTLTPELKREGLAREVVRFVQNARKSAGLNVDDRIELSLTTDDDELTQAIDEHAGAIRQETLAIILDSIKDGYEVVALVEGKSLNITLKKA
>NZ_CP040010.1|WP_171270293.1|166849_167689_+|glutamate-racemase
MANDRDCTDSLRLAARGVGSSPDLAIGVLDSGIGGLNVLRELVRILPNERYVYYADEKNAPYGEKPEGIVKSLVDDAVEFMVDLGVKAVVIACNTATSVAIDELRAKYSVPIIGMEPAIKPALMTDKRVLLMATPVTIRSGRLKKLLNKSGEADRVDLLEAPRLVEFAEASVFDSTEVKQYIRELLQGYDLSAYSSLVLGCSHFSFFKSVFRSIFPENIQIFDGSCGTADNLKAVLLRNSLCGNSGLSVEYCYSGEILCDKAEIKRLDRLCGISTEEGE
>NZ_CP040010.1|WP_171270292.1|165967_166576_+|vitamin-K-epoxide-reductase-family-protein
MPRKTEITDKQRRTIYSILLAGSLLGTLASLVLSHEAIVLAREANAVLSCDLNSVVSCGTVARHASAYIFGIPNSFIGMLAMPVFVTIAVAGISGTIFPRWFLKAAQLGAIFSLLCLGWMFYVSYVVIGALCPWCLVMDVAFLLIVYALIRYNALTDNLFLKGRVEVFIKNIVQKNYDAFIFLSIAVLAISAIILKYGSQLF
>NZ_CP040010.1|WP_171270291.1|165708_165984_+|hypothetical-protein
MRVVVVTKAQTDYARTVETFLEDFSRQTGRVLEVLDPETPEGESFCRAHDILQYPSVVALGNVGGMEAVQHIWSGALLPTINEVNYYASQN
>NZ_CP040010.1|WP_138059364.1|165252_165702_+|transcriptional-repressor-NrdR
MAHNYKIGDSRVLESRESADGITIRRRRETMDGKYRFTTYERIEHPNLAVIKQGGSRELFDREKLAGAIRRSVGKFFKSEIEIEEIINHVEERLYGLGENEIPSAQIGEFVLDELAAKNEVAYVRFASVFHKFKTLDDFVKILEQRRKG
>NZ_CP040010.1|WP_171270290.1|164033_165227_+|cell-division-protein-FtsZ
MPEVKPSEIQTFASIKVVGVGGAGGSAVNRMKDAGLVGVQFIAMNTDAQALHNSKADIKIHLGHNTTNGLGAGADPSVGEAAARESIDEIRDAIEGADMVFVTIGAGGGTGSGAGHVVAEVARDLGILCVGVATKPFSFEGEKRRTNAEWAIAQLGKQVDTLITIPNDRLLQTIDRRTPLLETFKIADDVLRQGVQGISELITEHGLINLDFADVKAIMSNAGSALMGIGRASGDGRAAQAAQQAIESPLIEVSIDGAKGVLFNVTGGYDMSMSEIQEAAEIITSAVSPDANIIFGATLKPELEDELIITVIATGFDSAYFHQQAAEFDKTSDEEKSIDTIDNAVQSIDMDLSHAEAAEHFASETTNDIWNQPTEDEDDDTPAFLRRRKKHNSTDEL
>NZ_CP040010.1|WP_171270289.1|162720_163956_+|cell-division-protein-FtsA
MQEQSRYAVGIDVGTTMIRCVVGHVDPATGTPTIVGVGQAPNTGMRKGTVANLSGPAHAIDQALLEAERMSGHQVDDATVSINGSHITSTKTDGMIAVGMADHEINDEDLGRIEEVATTGKLPANRKILEVVPFSYTLDGQGGIKDPIGMSGTRLEISANVISAMAPYVSNLQKAAEMATVSTNEIIPSVTASAKAVLGESQIESGVAVIDIGGSTTGVAVFEEGDLQYVGVVPMGGINITNDLAIGLKTDPEVAEKVKLKYAVAVGRTDNESVSIEQDKETLSFMTRDIDEIVEARLEEIFESVNRELKKAGRAGRLPSGVVLVGGTSNIKGIAEFAKKQLGVAARVGKATGFGGVADDIDKPQYATAVGLMLIDAERTAVSKNKQPSKGGGAIKGAGGVFSNFLKRFKS
>NZ_CP040010.1|WP_162322320.1|161920_162685_+|type-I-methionyl-aminopeptidase
MSGLITGEKTPEQIQAMREGGKILAQIFDDIRGYVRSGLTEQDIDKFVDTKIKEYGASATYKTSEVNFPGAICISTNEEIVHGVPSSYVLRKGDVVSFDLVITYKDMKTDSAFTMVVDEQPKGAVKHLLSATERSLYAGIDAIKGPVYTGDIGAAIERVLKDAKLGIVRELVGHGVGLKMHMPPDIPNYGRKGTGVLLKPGDTIAIEPMATLGGEGIIELDDGWTYATRDDSLAAHFEHTVLITESGAEIITKA
>NZ_CP040010.1|WP_171270288.1|161381_161933_+|nucleoside-monophosphate-kinase
MILLFGPTGAGKSMQGQMLAVRQGWKWLSTGEMLRQSTDPEVIETLRSGELVSDELTYHVFESAVQDARDKKYPNIIIDGFPRTKEQAAWLDQYMEEMNEKIDVVVVLEVPEAEIMARLEKRHRMEDTPETIARRMTIYRQKMYPVLGTFAEAGVKIVHLDGTGTAGEVHDRIFDEVTAACQG
>NZ_CP040010.1|WP_171270287.1|160906_161362_+|GatB/YqeY-domain-containing-protein
MTLKERINDEMKAALLGGNRFAGEVLRNLKAAILNEEVATGRRNEGLDDSGVEKVVAREVKKRTESAKIYRDNGRPELAEPEEREIEVLKVYLPTQLTEDELTTLVEQKIAELDVSGSQTIGQVIGAIKAEVGNKADGATLANIVKNTLSK
>NZ_CP040010.1|WP_138059370.1|171922_172093_+|PspC-domain-containing-protein
MKKLYRSRKDRKIAGVCGGIGEYLGIDPTILRVIFLVCWAAVLYFLLCLVIPEEGK
>NZ_CP040010.1|WP_138059371.1|172236_172482_+|hypothetical-protein
MLKLNRSHNFSISFPAHSGRKLAFSPVRSEHDELIQAIEASRGEACWQLTSTPDVRQLDEFWTGVTEDLRKDPSWFSFADD
>NZ_CP040010.1|WP_138059372.1|172550_172856_+|50S-ribosomal-protein-L21
MKAVVKIGGKQYLVAEKETLMVDLLPEGTKELDLDALLVIDGDKTTVGAPLVKGVKVKAKVVDEKVAGKKVRVIRYKSKKRVNTQTGHRQKYSRIQIVSIK
>NZ_CP040010.1|WP_171270296.1|172945_173710_+|ParA-family-protein
MTHIIAVTNQKGGVGKTTSSINIAYYLSKFGNRTLLIDFDPQGNATSGLGIDKQGLDFTMAEVILGKKKLAEVIVDTEFKNLRIAPATPTLANTEVELAQAEHRFSRLKYAVQALQTEYDYIIIDCPPSLSLLTVNALIVARYVLLPVQAEFYALEGLGQLLETMKLVRQKLNPTLDLVGVLATMVDNRTSLSSQVLAEIQKHFPGKVFQNTIPRNVRLAEAPSHGLPIGVYDRFSKGARAYKAVAKEVTERVS
>NZ_CP040010.1|WP_171270297.1|173699_174587_+|ParB/RepB/Spo0J-family-partition-protein
MSAKRGGLGRGLESLIPTEVLDESFDPTAEQDEQISDLRHIKLSEIVADPNQPRRTFDEASLEELSASIKEHGILQPIVVVPHEGKYMIVAGERRFRAAMRAGMEKIPALVRTLSNQHRLELSLIENLQRRDLNPLETATAYLKLRDQFNLTLDQIGQRVGGKSVAAISNTLRLLRLPASVRAALADGRLREGQVRPLINLDSDLIEAVLPRIIAEEWSARAVEQYVSSVKKMQSAKRLGEKPPVEHPYANSIARIEKRFSVPVRITTTARGSGQVVLSFKNDDEFQRIAKLLEK
>NZ_CP040010.1|WP_138059375.1|174596_175205_-|signal-peptidase-I
MEASFLTRHPRAKDAISLLIFISLVFIGTIIINTYIFRSFAVSGHSMDHTLADKDRLIVNRIPITQAQLANKTYMPKRGEIIVFKNPRYVPGMADEYIVKRVIALPGERVTVKDGVLTVYNNDHPDGYQPDEEWRKDGVGPQSPVSGDVDTTVPDQTVFVSGDNRIGQHSFDSRSGLGMIPTFDIIGPVVMRIYPFTSIRWF
>NZ_CP040010.1|WP_171270298.1|175301_176969_+|LCP-family-protein
MTKKHAIDGFVPRRSPGVVGEAHNRGELKLPHLDTSVGLQRRIPVHHSAMPVHVPRPSSEGNGLAPTKSDKHGLTRADIDDSLKQIDNDDQQSSKKSRRSKRGGEKSRRRRIIKRIVLFLILVILLIGGWIGVKALMASKSVFKGDIFGLIQQKELKKDANGRSNILIFGTSEDDEGGNHPGAALTDSIMVLSISQSKKDAFMVSLPRDLWVSYKEGCSAGYQFKLNELFNCTSAGGSNKDAGAKALMGKAKEVTGLDVQYHIHVNYTVVRQTVDAVGGITVKVESSDPRGILDRNFDWKCNYKCHYVKYANGEVAQMDGEHALAFMRARNAQGGYGLAGGNFDRERNQQKVIVALREKALSAGTLSNPAKVTGLIDALGNNMSTDFDTSEIRTLLSLASDIKSSAITSISLDKDGESVMTTANHNGVSIVRPSKGLFDYSDVTSYIKREINADAATREKAKIAVLNGSGVAGQAQIAADKLSDMGFIVSVVSNAPEGKYGRREVYQRDDKSMSATRAKLASMYGSEPKTGLSKFGVSADIDFVIVIGEADTKAQ
>NZ_CP040010.1|WP_138059377.1|176990_177776_+|hypothetical-protein
MDLLRSHKRRSRLSEAVYILLNIGLAVTLFAIVRVVQTPWLALVLVLLSKWRALAVRPRFWFANLVANMVDIIVGVSAVILLYAADGQIWLQVAMTVLHVVWLLFIKPRSKRAYMAAQAGIAVFLGVTSLSMVSYAWDATFFVLGMWVIGYVAARHVLGSYSEPHTTLYSLVTGFVFAEFGWIGFHWLMAYQPGVGFGSVKMSQLAVFATLFALVAERAYASYHRYGKVRTSEVILPIILTVSIMIAMYVLAVIKGVDALL
>NZ_CP040010.1|WP_171270299.1|177804_178956_+|trypsin-like-peptidase-domain-containing-protein
MNKNHQSVDNRVKQVVWIVVIAGVLILGATVTAGMYLYTRVNNTSISERNRPKHDGNLASTSDEALISRVVDAASPSVVSIMTNVSTRTMFGAAQQQAAGTGVVVSADGYILTNKHVVSGATAVTIVMSDGTIYEKVSLVGVDPLNDIAYLKIDGAKGLKPASLGDSSTVRVGQGVIAIGNALGQYQNTVSSGIISGKGRPVNAGSENGSTSESLSDLLQTDAAINPGNSGGPLLNRSGQVIGINTAVAANAEGIGFAIPINAVKGTLASVISGKGVQRSYIGLRYVPVTPAIAKRFNLPVKQGAYVVSDGATSAVETGGPADKAGISEKDIITKINGASVGEAGGVSTLIGAYAPGETVTVTYLRGGSERTTKVTLATYRAN
>NZ_CP040010.1|WP_171270300.1|178948_179770_-|peptide-chain-release-factor-N(5)-glutamine-methyltransferase
MSKTYPIRIWLRDAAEQLASVGIPSALLDAEIILAHTLRKSRTWLHAHGDETINIRDLEIANARLDLRLDRTPIAYIIGHKEFYSRLFKVTPSVLIPRPESEAIIALLKQYVPQKATRLIDIGTGSGCLGITAKLELPRLSVTLTDISRHALSVARHNASALRAYVVTCRSDLLSDIPGVFDIIIANLPYVDRSWDRSPETNIEPAIALFAEQNGLSLISQLITQLRGRLTPGGLLILEADPVQHDTILQLCQKVHLAHIATDGYAIAFKQTN

Crispr_ID: NZ_CP040010_2

• CRISPR_ID: NZ_CP040010_2
• CRISPR_location: 263458-264285
• CRISPR_type: TypeII
• Repeat_type: NA
• Spacer_info: 12 spacers
• Cas_protein_info: csn2,cas2,cas1,cas9

Consensus repeat of NZ_CP040010_2

Consensus_repeat	Method
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	PILER-CR
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	CRISPRCasFinder
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	CRT

spacers of NZ_CP040010_2

>2.1|263494|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT
CGAAGAAGCCAGCATCCTTTGCAATAAACT
>2.2|263560|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT
GGTGACTACAGGCGAGCCTTTTATTCGCAA
>2.3|263626|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT
CCTCTGCGATAAGTGTATAAGTGTCTCTAC
>2.4|263692|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT
ACGTGGTCTGAGGGTAAGTATCCCTGCACA
>2.5|263758|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT
CACCACCAAATGACATCATGAGATTATGGA
>2.6|263824|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT
TACCCGACAACTTGATATCACGCTTCAGCC
>2.7|263890|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT
ACTGATCACGGGCGTTTTCACGCTTTTCAA
>2.8|263956|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT
TGCTACTTTTATTTCTCAAAACTTTACTAG
>2.9|264022|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT
AAACCGGTCAGTGTATACTTACTGTCAATA
>2.10|264088|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT
TCCGTTTTCAGTCGATGATGATTACGACAC
>2.11|264154|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT
ACGTGGTCTGAGGGTAAGTATCCCTGCACA
>2.12|264220|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT
ACTCCTCCTTGATTACTTTCTTGATAAACC

CRISPR arrays and Neighbor proteins around NZ_CP040010_2

CRISPR arrays

The CRISPR arrays of NZ_CP040010_2

>merge|NZ_CP040010|2|263458-264285|PILER-CR,CRISPRCasFinder,CRT
GTTTCAGTACCATTCAATATAACACTACTGTAAAACCGAAGAAGCCAGCATCCTTTGCAATAAACTGTTTCAGTACCATTCAATATAACACTACTGTAAAACGGTGACTACAGGCGAGCCTTTTATTCGCAAGTTTCAGTACCATTCAATATAACACTACTGTAAAACCCTCTGCGATAAGTGTATAAGTGTCTCTACGTTTCAGTACCATTCAATATAACACTACTGTAAAACACGTGGTCTGAGGGTAAGTATCCCTGCACAGTTTCAGTACCATTCAATATAACACTACTGTAAAACCACCACCAAATGACATCATGAGATTATGGAGTTTCAGTACCATTCAATATAACACTACTGTAAAACTACCCGACAACTTGATATCACGCTTCAGCCGTTTCAGTACCATTCAATATAACACTACTGTAAAACACTGATCACGGGCGTTTTCACGCTTTTCAAGTTTCAGTACCATTCAATATAACACTACTGTAAAACTGCTACTTTTATTTCTCAAAACTTTACTAGGTTTCAGTACCATTCAATATAACACTACTGTAAAACAAACCGGTCAGTGTATACTTACTGTCAATAGTTTCAGTACCATTCAATATAACACTACTGTAAAACTCCGTTTTCAGTCGATGATGATTACGACACGTTTCAGTACCATTCAATATAACACTACTGTAAAACACGTGGTCTGAGGGTAAGTATCCCTGCACAGTTTCAGTACCATTCAATATAACACTACTGTAAAACACTCCTCCTTGATTACTTTCTTGATAAACCGTTTCAGTACCATTCAATATAACACTACTGTAAAAC

>NZ_CP040010|2|1|263458-264285|PILER-CR
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	CGAAGAAGCCAGCATCCTTTGCAATAAACT
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	GGTGACTACAGGCGAGCCTTTTATTCGCAA
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	CCTCTGCGATAAGTGTATAAGTGTCTCTAC
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	ACGTGGTCTGAGGGTAAGTATCCCTGCACA
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	CACCACCAAATGACATCATGAGATTATGGA
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	TACCCGACAACTTGATATCACGCTTCAGCC
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	ACTGATCACGGGCGTTTTCACGCTTTTCAA
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	TGCTACTTTTATTTCTCAAAACTTTACTAG
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	AAACCGGTCAGTGTATACTTACTGTCAATA
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	TCCGTTTTCAGTCGATGATGATTACGACAC
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	ACGTGGTCTGAGGGTAAGTATCCCTGCACA
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	ACTCCTCCTTGATTACTTTCTTGATAAACC
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC

>NZ_CP040010|2|2|263458-264285|CRISPRCasFinder
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	CGAAGAAGCCAGCATCCTTTGCAATAAACT
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	GGTGACTACAGGCGAGCCTTTTATTCGCAA
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	CCTCTGCGATAAGTGTATAAGTGTCTCTAC
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	ACGTGGTCTGAGGGTAAGTATCCCTGCACA
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	CACCACCAAATGACATCATGAGATTATGGA
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	TACCCGACAACTTGATATCACGCTTCAGCC
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	ACTGATCACGGGCGTTTTCACGCTTTTCAA
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	TGCTACTTTTATTTCTCAAAACTTTACTAG
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	AAACCGGTCAGTGTATACTTACTGTCAATA
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	TCCGTTTTCAGTCGATGATGATTACGACAC
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	ACGTGGTCTGAGGGTAAGTATCCCTGCACA
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	ACTCCTCCTTGATTACTTTCTTGATAAACC
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC

>NZ_CP040010|2|1|263458-264285|CRT
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	CGAAGAAGCCAGCATCCTTTGCAATAAACT
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	GGTGACTACAGGCGAGCCTTTTATTCGCAA
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	CCTCTGCGATAAGTGTATAAGTGTCTCTAC
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	ACGTGGTCTGAGGGTAAGTATCCCTGCACA
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	CACCACCAAATGACATCATGAGATTATGGA
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	TACCCGACAACTTGATATCACGCTTCAGCC
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	ACTGATCACGGGCGTTTTCACGCTTTTCAA
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	TGCTACTTTTATTTCTCAAAACTTTACTAG
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	AAACCGGTCAGTGTATACTTACTGTCAATA
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	TCCGTTTTCAGTCGATGATGATTACGACAC
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	ACGTGGTCTGAGGGTAAGTATCCCTGCACA
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC	ACTCCTCCTTGATTACTTTCTTGATAAACC
GTTTCAGTACCATTCAATATAACACTACTGTAAAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040010.1|WP_162371774.1|264339_265029_-|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd09644_csn2_CAS-II-A	gnl|CDD|213407
NZ_CP040010.1|WP_162371769.1|251049_252207_+|glycosyltransferase	unknown	unknown	gnl|CDD|234825
NZ_CP040010.1|WP_171270369.1|273478_274567_-|hypothetical-protein	unknown	unknown	gnl|CDD|223642
NZ_CP040010.1|WP_171270367.1|268983_270252_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	mkCas0193_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl|CDD|374653
NZ_CP040010.1|WP_171270371.1|277429_277714_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP040010.1|WP_171270359.1|246983_248735_+|penicillin-binding-protein-2	unknown	unknown	gnl|CDD|223839
NZ_CP040010.1|WP_171270372.1|278129_278555_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP040010.1|WP_171270357.1|243787_244798_+|YvcK-family-protein	unknown	unknown	gnl|CDD|376670
NZ_CP040010.1|WP_171270365.1|265348_266227_-|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl|CDD|187851
NZ_CP040010.1|WP_171270370.1|274975_277318_-|type-I-DNA-topoisomerase	unknown	unknown	gnl|CDD|236048
NZ_CP040010.1|WP_171270362.1|254590_262018_+|InlB-B-repeat-containing-protein	unknown	unknown	gnl|CDD|308794
NZ_CP040010.1|WP_171270364.1|265025_265346_-|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl|CDD|226043
NZ_CP040010.1|WP_171270358.1|245520_246411_+|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase-RsmH	unknown	unknown	gnl|CDD|234597
NZ_CP040010.1|WP_171270363.1|262078_262660_-|NUDIX-hydrolase	unknown	unknown	gnl|CDD|239217
NZ_CP040010.1|WP_162371767.1|248754_249801_+|phospho-N-acetylmuramoyl-pentapeptide--transferase	unknown	unknown	gnl|CDD|133462
NZ_CP040010.1|WP_171270366.1|266230_268873_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	mkCas0193_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl|CDD|273840
NZ_CP040010.1|WP_171270368.1|270531_273354_-|ATP-binding-protein	unknown	unknown	gnl|CDD|223510
NZ_CP040010.1|WP_171270361.1|252244_253195_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040010.1|WP_138059444.1|246620_246971_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP040010.1|WP_171270360.1|249803_251123_+|FtsW/RodA/SpoVE-family-cell-cycle-protein	unknown	unknown	gnl|CDD|223843

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_CP040010.1|WP_162371774.1|264339_265029_-|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd09644_csn2_CAS-II-A	1.9e-32	107.2	15.7
NZ_CP040010.1|WP_171270366.1|266230_268873_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	mkCas0193_cas9_CAS-II-A:CAS-II-B:CAS-II-C	1.4e-182	604.2	33.7
NZ_CP040010.1|WP_171270364.1|265025_265346_-|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	5.5e-36	118.1	1.5
NZ_CP040010.1|WP_171270367.1|268983_270252_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	mkCas0193_cas9_CAS-II-A:CAS-II-B:CAS-II-C	3e-92	304.9	13.6
NZ_CP040010.1|WP_171270365.1|265348_266227_-|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	5.1e-94	309.2	2.4

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP040010.1|WP_162371774.1|264339_265029_-|type-II-A-CRISPR-associated-protein-Csn2	gnl|CDD|213407	cd09644, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	3.56289e-20
NZ_CP040010.1|WP_162371769.1|251049_252207_+|glycosyltransferase	gnl|CDD|234825	PRK00726, murG, undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional.	9.3667e-95
NZ_CP040010.1|WP_171270369.1|273478_274567_-|hypothetical-protein	gnl|CDD|223642	COG0568, RpoD, DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) [Transcription].	4.44283e-10
NZ_CP040010.1|WP_171270367.1|268983_270252_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl|CDD|374653	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9. The REC lobe of Cas9 - the CRISPR-associated endonuclease Cas9 - includes the REC1 and REC2 domains. REC1 forms an elongated, alpha-helical structure consisting of 25 alpha helices and two beta-sheets, whereas REC2 inserted within REC1 adopts a six-helix bundle structure. The REC lobe and the NUC lobe of Cas9 fold to present a positively charged groove at their interface which accommodates the negatively charged sgRNA:target DNA heteroduplex. CRISPR (clustered regularly interspaced short palindromic repeat)-Cas system occurs naturally in bacteria as a defense against invasion by phages or other mobile genetic elements. Cas9 is targeted to specific genomic locations by sgRNAs or single guide RNAs, in order to complex with invading DNA in order to cleave it and render it inactive.	9.04203e-36
NZ_CP040010.1|WP_171270364.1|265025_265346_-|CRISPR-associated-endonuclease-Cas2	gnl|CDD|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.36697e-29
NZ_CP040010.1|WP_171270357.1|243787_244798_+|YvcK-family-protein	gnl|CDD|376670	pfam01933, UPF0052, Uncharacterized protein family UPF0052.	4.83292e-105
NZ_CP040010.1|WP_171270365.1|265348_266227_-|type-II-CRISPR-associated-endonuclease-Cas1	gnl|CDD|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	4.72705e-107
NZ_CP040010.1|WP_171270370.1|274975_277318_-|type-I-DNA-topoisomerase	gnl|CDD|236048	PRK07561, PRK07561, DNA topoisomerase I subunit omega; Validated.	0
NZ_CP040010.1|WP_171270362.1|254590_262018_+|InlB-B-repeat-containing-protein	gnl|CDD|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	1.78834e-36
NZ_CP040010.1|WP_171270358.1|245520_246411_+|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase-RsmH	gnl|CDD|234597	PRK00050, PRK00050, 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH.	4.96273e-116
NZ_CP040010.1|WP_171270363.1|262078_262660_-|NUDIX-hydrolase	gnl|CDD|239217	cd02883, Nudix_Hydrolase, Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzymes. Substrate specificity is used to define child families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required. This superfamily consists of at least nine families: IPP (isopentenyl diphosphate) isomerase, ADP ribose pyrophosphatase, mutT pyrophosphohydrolase, coenzyme-A pyrophosphatase, MTH1-7,8-dihydro-8-oxoguanine-triphosphatase, diadenosine tetraphosphate hydrolase, NADH pyrophosphatase, GDP-mannose hydrolase and the c-terminal portion of the mutY adenine glycosylase.	3.94576e-18
NZ_CP040010.1|WP_162371767.1|248754_249801_+|phospho-N-acetylmuramoyl-pentapeptide--transferase	gnl|CDD|133462	cd06852, GT_MraY, Phospho-N-acetylmuramoyl-pentapeptide-transferase (mraY) is an enzyme responsible for the formation of the first lipid intermediate in the synthesis of bacterial cell wall peptidoglycan. It catalyzes the formation of undecaprenyl-pyrophosphoryl-N-acetylmuramoyl-pentapeptide from UDP-MurNAc-pentapeptide and undecaprenyl-phosphate. It is an integral membrane protein with possibly ten transmembrane domains.	4.88237e-82
NZ_CP040010.1|WP_171270366.1|266230_268873_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl|CDD|273840	TIGR01865, conserved_hypothetical_protein, CRISPR subtype II/NMENI RNA-guided endonuclease Cas9/Csn1. CRISPR loci appear to be mobile elements with a wide host range. This model represents a protein found only in CRISPR-containing species, near other CRISPR-associated proteins (cas), as part of the NMENI subtype of CRISPR/Cas locus. The species range so far for this protein is animal pathogens and commensals only.	5.93486e-110
NZ_CP040010.1|WP_171270368.1|270531_273354_-|ATP-binding-protein	gnl|CDD|223510	COG0433, COG0433, HerA helicase [Replication, recombination, and repair].	3.91164e-07
NZ_CP040010.1|WP_171270359.1|246983_248735_+|penicillin-binding-protein-2	gnl|CDD|223839	COG0768, FtsI, Cell division protein FtsI/penicillin-binding protein 2 [Cell envelope biogenesis, outer membrane].	3.68625e-104
NZ_CP040010.1|WP_171270360.1|249803_251123_+|FtsW/RodA/SpoVE-family-cell-cycle-protein	gnl|CDD|223843	COG0772, FtsW, Bacterial cell division membrane protein [Cell division and chromosome partitioning].	3.57317e-78

Protein sequences

>NZ_CP040010.1|WP_171270363.1|262078_262660_-|NUDIX-hydrolase
MTHSHSNPNIEIPKHLKEIAHISDDNFNIPPIHHNERPITRFGSRGIVLNDNDEIAVIHKKAKNEYKLPGGGIDSGEGPREAFRRECREELGCSVTITNELGIAIEYKSQENFQQVSFVYEAKVTGQPYRNSLTYKETAEGAECVWLQKIEALKRIRGSLNNLKASSYDSVYRTKFMVLRDAQILEHYIKTTK
>NZ_CP040010.1|WP_171270362.1|254590_262018_+|InlB-B-repeat-containing-protein
MRIMQKTRRLLLASAIAVVTVGVLVTQYFVASQLAKADAINSTDFVMTIDTRKGTGNTFTVPTIGGGYNYTLVCGNGVVLTGQTGNATCSYATAGVYKVRIAGAFPRIYFDYRGDRFKVISIDQWGTNEWQNMEHAFDGAENLDVKATDKPRMGRVVSLAYMFRDAKSLKGEGADWQWDTKNVESLNSTFSGARQFNQNISSWNTSKVTDMDNTFTNAYEFNQPIQSWDVSKVNTMVAVLAYAKKFNQPIGEWNTTQLTDALLALAGAERFDQSLAHWDVRRLTDADRLLDGVKISTPNYDATLTSWQAQAVRGNVKLGGGNSNYCVAEAKRNDLIATKSWIITDAGKDCTAYTVTAVDYTGVTDVDENTTTGTVLGRLNSTDAVNSPQSDFTYTLDCAGAQNSLVAIDGNAIKLAQSPDYEQNTTLEICVRATNKAGKTFDKHLTISVNNLYSVSYNANGADAGAPPASTGETLHSGDSVSVEANTNGLAKTGHSFTGWNTAPNGAGTPYAPGANFHLTGDITLYAQWQVNNYTLHFDSKGGSNVPDQTVAFGAKATTPTAPTKTGHTFAGWYKEAGLVNAWNFATDTMPASDTTLYAKWTVNQYKIHYDANTGTGGATPDTVSNYDTTVQIANNGFTKTGHSFTGWNTAPNGAGTPYAPGANFHLTGDITLYAQWQVNNYTLHFDSKGGSNVPDQTVAFGAKATTPTAPTKTGHTFAGWYKEAGLVNAWNFATDTMPASDTTLYAKWTVNQYKIHYDANTGTGGATPDTVSNYDTTVQIANNGFTKTGHSFTGWNTAPNGAGTPYAPGANFHLTGDITLYAQWQVNNYTLHFDSKGGSNVPDQTVAFGAKATTPTAPTKTGHTFAGWYKEAGLVNAWNFATDTMPASDTTLYAKWTVNQYKIHYDANTGTGGATPDTVSNYDTTVQIANNGFTKTGHSFTGWNTAPNGAGTPYAPGANFHLTGDITLYAQWQVNNYTLHFDSKGGSNVPDQTVAFGAKATTPTAPTKTGHTFAGWYKEAGLVNAWNFATDTMPASDTTLYAKWTVNQYKIHYDANTGTGGATPDTVSNYDTTVQIANNGFTKTGHSFTGWNTAPNGAGTPYAPGANFHLTGDITLYAQWQVNNYTLHFDSKGGSNVPDQTVAFGAKATTPTAPTKTGHTFAGWYKEAGLVNAWNFATDTMPASDTTLYAKWTVNQYKIHYDANTGTGGATPDTVSNYDTTVQIANNGFTKTGHSFTGWNTAPNGAGTPYAPGANFHLTGDITLYAQWQVNNYTLHFDSKGGSNVPDQTVAFGAKATTPTAPTKTGHTFAGWYKEAGLVNAWNFATDTMPASDTTLYAKWTVNQYKIHYDANTGTGGATPDTVSNYDTTVQIANNGFTKTGHSFTGWNTAPNGAGTPYAPGANFHLTGDITLYAQWQVNNYTLHFDSKGGSNVPDQTVAFGAKATTPTAPTKTGHTFAGWYKEAGLVNAWNFATDTMPASDTTLYAKWTVNQYKIHYDANTGTGGATPDTVSNYDTTVQIANNGFTKTGHSFTGWNTAPNGAGTPYAPGANFHLTGDITLYAQWQVNNYTLHFDSKGGSNVPDQTVAFGAKATTPTAPTKTGHTFAGWYKEAGLVNAWNFATDTMPASDTTLYAKWTVNQYKIHYDANTGTGGATPDTVSNYDTTVQIANNGFTKTGHSFTGWNTAPNGAGTPYAPGANFHLTGDITLYAQWQVNNYTLHFDSKGGSNVPDQTVAFGAKATTPTAPTKTGHTFAGWYKEAGLVNAWNFATDTMPASDTTLYAKWTVNQYKIHYDANTGTGGATPDTVSNYDTTVQIANNGFTKTGHSFTGWNTAPNGAGTPYAPGANFHLTGDITLYAQWQVNNYTLHFDSKGGSNVPDQTVAFGAKATTPTAPTKTGHTFAGWYKEAGLVNAWNFATDTMPASDTTLYAKWTVNQYKIHYDANTGTGGATPDTVSNYDTTVQIANNGFTKTGHSFTGWNTAPNGAGTPYAPGANFHLTGDITLYAQWQDTQPPVAPAAAPDMTATSDTGDSDSDNITNKNKPVFKLVCTEVGSTLTLYVDGAANGTVNCTNVGPVDMVSTAPLTEGNHSVTFKESDAAGNESPSSPALAVTIDTTAPAAPTVTMDPVTADNTINSVEAAGAQFIRGSVTGARPGDKARLTINGVIYEATIDATGRFSVTVPGIELVSDPDRTIDVVVTASDVAGNTTSINSSKTYNVDANVVVPPARATLKASSDTGSSDSDNITKNTRPVVTLQCISATDKLHLIVDGVEVQVANCTSAGPIEVTLPNALSDGSHTVTYSRETSAGNVSAPSMPLTLTIDTTAPTGALTTQQATVASPALSGTVNDPTATVVVTINGADYPAVVAGGIWTLPSNSIAALGDGAYTVKMKFTDIAGNVSVTQGVLTISLPSSPLTPQPPQPGGVGVATPEQNKKKSHSSLAGTGDNLYLIIGVVCLTIAAGSIGLYRLRRRVR
>NZ_CP040010.1|WP_171270361.1|252244_253195_+|hypothetical-protein
MKLLRKKQQVPARRSGLVVREGRATADSLDERYAFRRNRTLTGSLSSNVSSASEPFNELRSARVQSHDLRSHRRKLFGVWLGVSVATLLLGYLLYESIALPNVRFQEAVVVQPEDKSLYEKKIQEYLNAHFFERSRLTLNVKNLAIYLQTHGAPEVEEVSSSLSFGGLGVSTISLKVRKPVVSWKTGDVRLYVDQKGIGFEKNYYDAPTVSVLDQTGVQTRNNRILASNRFLSFMGRLIGRLAEQGYRATQVVLPEGTTRQLLMSVDGVPYPIKFSVDRPAAAQAEDAARSIRYLLASGISPTYLDVRVSGKAYYK
>NZ_CP040010.1|WP_162371769.1|251049_252207_+|glycosyltransferase
MKVLAAGGGSGGHVTPVVAVLREIKDQYPDTEIRFWCDRKFESQARRVMKHFDDSIRVDVVVSGKLRRYHHLTFIQQLIKLRTIVLPNLIDGIKVAVGAIQSFAKLIVWRPDVVFTKGGFVCLPIGFAAHMLRIPLVIHDSDAHPGLTNRILARWAFRIGTGAPLKFYSYPSSLSRYVGVPVRAEFTPYSEGDRQKVKRSLGFDSNRPLVVITGGGLGARRINMAVATMLNELMERANIVLISGEGQYDEMRALTPQNDERYQLHAFVGQGMADMLGAADVVVARAGATTILELAALAKPTILVPNGYLTGGHQLKNAAVYAEKGAVSVIDENQLEKHPDILLDEVINILSDDTRRKQMSRLFYEFAKPNAARDMATLIVSAVKK
>NZ_CP040010.1|WP_171270360.1|249803_251123_+|FtsW/RodA/SpoVE-family-cell-cycle-protein
MGVARRRDGRSTFLQGSTDVANQRRHRPDYRIVLFMGILMLLGLVVMYAIGPERANLLNRIYNTNTYTENFFVIKQVVSLAIALLAFIFMSTVPFTKLRKYGFQLVCVGLALSFLLFLLGNVAHIVPSTLGAYRWFQVGSLSFQPAEVLKLSLLIYTAAFLGKRYSEGKIDDKSATLYPILGLSGLALFIVVVIQKDMGTGLAIFSMLATMFIVSTMNWKILLKIVVVCVVLGIIALVTSPHRMERLTTFIGGDSASMTAANESDNNYHIKNAKIALGTGGLFGRGIGKSIQATGYLPEAINDSIFAIMGEIFGFIGTTIIIGLFSALLLRLLKISDRLPDMSMRLAVAGVFGWLVAHVAMNIASMIGITPLTGITLPLLSFGGTSMIFMCAALGLAFQLSRYTSHRPVQLKEATHESTSSRWGVGGSRYTRRRRSTGN
>NZ_CP040010.1|WP_162371767.1|248754_249801_+|phospho-N-acetylmuramoyl-pentapeptide--transferase
MELPPHAAIHHLTTDLNATFILSIGAFLLSMVLTPVYTYFAYRYKFWKKQRSTSTLGEKLQIFTKLHQNKFTRNIPTMAGIIGVIAISVVTLGFNWDRAQTQLPLAALIGGAAVGLLDDIINIRGQGKGVAGLRSSLKFVMIILMSLVLGWFFYAKLGYTSIHVPFVGDWQVGVWIIAIFVLVVVSTGNAVNISDGLDGLAGGLLAVSFSVFGMIALLQGHLKIAGFCFTVVGALLSYLWFNIYPARFFMGDVGSFAFGTSLGVVAMLTNTLFLLPIIGMIFVIEAGSSLIQITAKRFFGRKIFISAPIHHHLEAKGWPETKVTMRFWVIACVAGFIGLLLALTGGHI
>NZ_CP040010.1|WP_171270359.1|246983_248735_+|penicillin-binding-protein-2
MKLHFFRLSRAQYIAIITVLLMALFVVRLFHIQVIQHALYVEQADSEHIKQFTLHAKRGEIYTMDSGVPHKLVMNETVYTVWADPTMIVDKQAVVTAINKIAGGNARNDFAKYLDVKKSRYQVLATKVSRKQAQMLKKENLPGIGFDAVSQRVYPEGQLASQVLGFVDAEGKGKYGFEQANDATLRGVDGMLKTVTDVRSVPLTVSDKNIKKPAVDGKNMVLTIDRNVQARVEQALADGLARSGAKKASAIVMDPQTGKILAMANLPTYDPGKLNEIKDEDQVSNDVITHPYEVGSDVKTFTMAMGIDKGVITPGTTYNNTDSIRIEDITIKNASLGHTGDITMQKALNLSLNTGVVTVAQLLGDGSRITRGARNTIYDYFYNRFRLGQVTGVELANESAGVVISPDHVQGNAVRYSNMVFGQGMDVTMLQVASGFSAIVNGGIYHMPTVIAGSIDQDGQFKEAPLKRQFPGVISASSSATIREMVHQAHYATYNPKGDGSERYLVGGKTGTSQTIINGKYVDNQTVGTYLGYGGEKGATPSYVAMVEISAPGKNMGGGADAKPIFNEISNWMLGYLRLTPKE
>NZ_CP040010.1|WP_138059444.1|246620_246971_+|hypothetical-protein
MSYARTTQFNSRRQTNWSRNQNTVAFASAVKLGPITHTVLVALMLTILGLIYLTQATRVSGYDYAANEVANKISNLTEQKNDLEVENARLTALQSVKNSSVAKNMATPTDTRSVSE
>NZ_CP040010.1|WP_171270358.1|245520_246411_+|16S-rRNA-(cytosine(1402)-N(4))-methyltransferase-RsmH
MSIKEHPPLHVPVLLNDVLVTLDPKSGENYLDLTAGYGGHAREIFARTANYTESTLVDRDEMAQSHLTEFSKKGTQLLHADFASAAKQLVEEGRSYNLILLDLGVSSPQLDRAERGFSFTHDGPLDMRMDKRQAYTAETFVNTAKRSDIVRCIREYGEEPLSVAKRYADAIIASRPIVSTGQLADIIRQSHVGKWQKTHPATRTFQAIRIQVNDELRQVEEVMSLLPKLLKRGGRVGVISFHSLEDRIVKRYFAEQAKSGYEAELDIVTKHPISGATQDVHNPRSRSAKLRVAVKK
>NZ_CP040010.1|WP_171270357.1|243787_244798_+|YvcK-family-protein
MNEPFAPSEMKIAVIGGGTGSFMLLSALKDHTSQIAALVNMVDDGGSTGVLRDELGVLPPGDVRQCLVALSGSPRIRDLFNYRFEEGTFEGHSFGNLFLTALEKTTGSFAQAIETASDILRVNGNVIPATLDDVRLVMSWGGKSDLTLHGERVIDADHFKHDPRRATLSLDPIPTVNPMAIAAIEQADLVVIAPGDLYTSLGPLLVIDGIGDALRRTKAKVVYVCNLVTKDGQTNNFTVSDHAAEIERFGGGGFLDVVLYNNQMPSEQMLERYQTEHAYPVVIDPEALASASYEAIGGNFIGQIAEYNPVDQHIPVTRNLIRHNPVAVANTLVSLV
>NZ_CP040010.1|WP_162371774.1|264339_265029_-|type-II-A-CRISPR-associated-protein-Csn2
MNISISGFDNTLSIPDDGGIATLIVHNNLFFRRVVEDMLDIYTKREDNNRTVIYNSDHNPLNFAKDTLVITDIYSYDLANRTITAALYKNIQDNSDIDIAKLAQIEADILDVLSAINTNFSQSINYQTDISINDIMKMAHVGLEANEKNNYLDKLYGIIDSAQQLLSKRLVILINQRQLLSHCELQALLQYVQNNHFSVLFIEKNCKDKLNEENILVIDDDLYDFSTNS
>NZ_CP040010.1|WP_171270364.1|265025_265346_-|CRISPR-associated-endonuclease-Cas2
MKVRYMRMILFFDLPMVSARERKIYATFRKQLTQEGFVMMQQSVYSKLVLNSTNEKSTYDRLKKIIPDNGVIQLLTITERQFASMEYLAGEYEELSIQSTDRTVVL
>NZ_CP040010.1|WP_171270365.1|265348_266227_-|type-II-CRISPR-associated-endonuclease-Cas1
MSWRTVIVKNRCKLSYKNDYMLIISDGKEKALHISEIGTLIIENTAVNITAYLLCELARYKVKIIFCDHQRNPYSEIIPYYGAHNASKQMRRQSQWPQTNKDKIWQRIVAQKIIKQAQVVYRETSNQTSCETLMNFAASVLSGDTTNREAHAAKFYFKELFGPQFSRDSSSDINAALNYGYAILLSAFNREITAAGYSTTMGVNHCNEYNPFNLTCDLMEPFRPVVDREVYKCRSFAFDDFFKSRLIDILNHKVIILGKEQFLSNAINIYVKLFFRAMEEGSEKDLPEYELI
>NZ_CP040010.1|WP_171270366.1|266230_268873_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MIYPWNFDEIIDDEASAERFIDRMRNNCTYLPDEEVLPKNSLLYQEYEVRNELKNVTVNGERLSPDIQNRIVDELFTKELSVTYKKLIKYLYDNQIYNTDSLIISGTAKEKSFASSRKSYIDFTQKVGVAITPKNQQAIEEVIKWITLFEDKKILAKKLQKHSGIFNENQLRTILKLNYSGWGRLSRKLLDGITAHTPYGELTVIETMRRCSDNFMQITQSDQYEFKKIIDDILSVNQRADITYDDIKNLAGSPGIKRALWRSVRIVDEIVDTIGYEPKLISIEMARNEDEKVRTKSRYSQLEKMYKELYGKEYAKSDIKSQLANYKDKLDRKKYYLYFLQNGKCAYTGDPLDIENDLRDSEIDHILPRSLTKDDSLDNTVLVLRKENQRKLDDYPIAPDIQNHMRPIWTSLKNAKLMSQLKFQRLTSQKQLSEDRVAGFVNRQLVETRQITKHLARMLTEKYHDSDTEVFTIRAGMSSEYRRIHDLPKCREVNDLHHAKDAYLAAVLAQYIKIRYPKLDKAFVYGEYMKFKSKKQTNMDRSSFILASMSYDLTNKETGEIIWQSKITHDVIDRTMKYNDCLITKKTEIGDNQFYDQTIYGKNSGATMITRKANLPVDKYGGYSGRKAAYFMAIRYLKQVRNKDVFVNEIISVPTQIYTLEKTKPGSINEYIRNNYKQAKVLISKIPINQKIEHEGNEQFIVGSSEVTNAKQLKLPYNIEYAVAVALKQGIPRITITEEQAAGDDELQNKRNKQIERRDKVIDRVEKFWGIYAEKLANQYQQFGNAGPNAQSALAEYSELSLDDKIKVIGLVLRATHAGSDRVDMKGSENKPVFPELGLPNSFGRMAGKSLDPTKLTFVYESITGLHRRKLDGKSLGRDR
>NZ_CP040010.1|WP_171270367.1|268983_270252_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MKQSYSIGLDIGTNSVGWAVINESFDLRKYKHQNMWGAHLFDEAQKAATRRSFRSSRRRLARRKRRVTLIQQIFNDEIQKIDPHFYLRLSESMLHIGNKNSALELDANILFADHSFTDKSYREKYPTIYHLRSDLFHNSAKQDIRLVYLALHHIIKYRGNFLVEGGVDNVISSFDSQNLQTFMDFISADESVAKKVKAILLNRSLSRSTRKSAIIELLQPSPDNKKTISEAVGAVIGLKWNANKLFEDDSLEAKGEFSNKNYEEQRDEIATAIGDDRYGLVETLESVYQWTIFSQFIRKDSCLSDIMIEKYDAYRQDLSDLKALFHEFIPQKYKTFFHGDAAEFELYNNHKRNLDDLYKSIKKQLGEVAKDDPRYQRFEKRTELEEFLSRQRIRDNGAIPHQIHQYELEKESSTTKRSTIRS
>NZ_CP040010.1|WP_171270368.1|270531_273354_-|ATP-binding-protein
MSIIVDFINIILQWYVWLPIVAILGYMTWRNYQRVDVVRNVDSVLLMLEIPKTNDKSELAAEQMFASLHGILRDAKELKANGGYQEHLSFEIASVGGRIQFYVWTPKSLQNFVEGQIYAQYPQVQIHATDEDYVAHERHHSVVYTSEIVLTDKEFLPIKTFQSFEVDPLAGITGTLAKLEDTEEEIWIQMLIRPVRDDWHKASDAWIKSVKSGGFNLFGDGGMKWVAGLFELLWAPPEQGTGSAAEISERDKTRIAEAEKKATKLGYQVKIRLAYLGENTSDAKLRMQGIVGTFKQFNSTNLNGFKQSHDSFAKESLAKYKTRLFADRGYLMNIEEVASVFHLPHTNVETPNIVWASTKTAEPPAKLPILTGDPAHDENISAFGMTNFRGINHQFGMLRYDRSRHVYIIGQTGAGKSGLLELFALSDIFHGQGYAIIDPHGDFAINNMRFVPGSRLKDVVYFNPADTQYPLGFNPLEVTNPSQKTNISSEVIGVLKRMFGDSWGPRLEYILRYTILALLDRPETTMLDITRMLTDKKFRKETLSYCTDTVVLQFWNVEFASWTDKFQAEAIAPVLNKVGAFTANPVIRNIIGQPKSTFNIRQIMDEGKILVVNLSKGLIGEDNAGILGSFLVTKIQLAAMSRSDIPDIKDRRPFYLYVDEFQNFATDSFATILSEARKYGLNLTVANQYISQMQDSVRDAVFGNVGTMISFRVSADDSPILAKQFEPQFEPNDLLQMHNRNFIINMVINGEKAPAFSAKTLNLPPAQDDNTGRIIQHTRENYARNRQEIEEDISKRILPPENLVVKRPGPAYTPPKSPEQREAERRAKEAAILAQGKTWPISNVTPDEVNIALKEARDQKKQPSTEPKTSDQPDAPINNSNNVTEKPKKKRTRTRKRKPSGSSDTQQEPNRPRIIRESSVNDGKPSSNNPENDPTILSIR
>NZ_CP040010.1|WP_171270369.1|273478_274567_-|hypothetical-protein
MRQRERRVLPMSDTAKSDTAATLKSAVQEILKAIDQEREREIITRRFGLFERRETLEQIGELLSITRERVRQLEKAILIRLKIAADEGKIPAVHEIERLIVRDLSENGRVGRVQDVATRMVGNMPTVETKSRIAFVGELSPKLVVINENDNYYQGVGIAENGDEKKIRSSVDEIVKTIKKHGEPVDIETLHGMLNYESPSQVRALASLSKGLASLKDVWGLVKWPTVNPKNIRDKIYVILADNGKPMHFSEIAKFIKDSDFKRKDVTTQAIHNELIKDKRFVLIGRGIYALDSWGYSKGTVSDIITKVLKKAGEPLHRDEIVKRVLKSRQVKETTILLNLQSKPEFKRVAKATYTLAELETN
>NZ_CP040010.1|WP_171270370.1|274975_277318_-|type-I-DNA-topoisomerase
MKNLVIVESPAKAKTIEKYLGKDFHVLSSVGHIRSIPKKTKDGTPPIDVKNGFATTYEIDPEKKKVISELKKQVKAVGPANVWLATDEDREGEAIAWHLCEVLKLDPATTKRIVFHEITKPAIEEAIKHPRTVDMKLVEAQQARQILDRVVGFELSPVVWRKVPGGKSAGRVQSPAVRLLVEREREIEAYNTSAQFKVTAIFIHDGQELNAELKQRFDTEKEATEFLEGLVGATYTVSDITKSPSTRNPSAPFTTSTLQQEANSKLGMSSKATMTSAQKLYQEGRITYMRTDSVTLSSQAIASTADLVKRLYGIEYSHVRKFKTKSASAQEAHEAIRPTDITRESVSGNEYDQKLYDLIRRRTLASQMAPAKLENTTVTITISKTEQSSEKNKKLVFEAKGQVVVFDGFLRVYGGKDDTLLPAVSSGDTLQQYSVEARQVFSRPPARYTEGSLVKKLEELGIGRPSTYATIINTVQARGYAERGESEGTPRDVIVLQLIDGEVDREIIQEKTGSNRGKLVPTPSGELISDFLSNHFDQIVDYDFTSKVEAHFDDIATNRLARNTMLRDFYEPFHELIEGSGSIDRSTVGNSREIGVDPKTGKTILARFGRFGPMLQLGASDDSEKPQFAPMPRGAKIETVTLEQALEAFKLPRLVGQADDGQDIKANIGRFGPYIQVGKLFISIKDHDPHDIDLDTAKTLYAEKLKAEAEKNIADFGEIKVLRGRFGPYVTDGKKNAKIPKDIDPTTLTETDAKKLLDEAPAKSARGKTRRAPRRGSKKA
>NZ_CP040010.1|WP_171270371.1|277429_277714_-|hypothetical-protein
MGVRFTDTYDAEEVAARMVIICAEQQGIDPAEISLQGNIAEETELEILRILHKEEILRGTEATLRLRQAQDDARQSTERSNWLWKKIKIRQQEA
>NZ_CP040010.1|WP_171270372.1|278129_278555_-|hypothetical-protein
MSKKHRVDIKITGDMVTINSTTRLKEEHLDKIRKCPGVYNTMAVTGRYSVTILVGEAFDALETTARVVTIITKSRPDRLDIRGEHAASIRRLTFSIQLEELSRAIEKALKKSDRCRKRAGRLNKRRIKLYLKGQEIGQQEA

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP040010_2	2.12|264220|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	264220-264249	30	NC_015598	Lactobacillus kefiranofaciens ZW3 plasmid pWW1, complete sequence	74664-74693	6	0.8
NZ_CP040010_2	2.12|264220|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	264220-264249	30	MK448743	Streptococcus phage Javan371, complete genome	12095-12124	6	0.8
NZ_CP040010_2	2.1|263494|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	263494-263523	30	NZ_LN906635	Lactobacillus reuteri plasmid p53608_1, complete genome, strain ATCC 53608	61112-61141	7	0.767
NZ_CP040010_2	2.12|264220|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	264220-264249	30	MK448920	Streptococcus phage Javan372, complete genome	13147-13176	7	0.767
NZ_CP040010_2	2.1|263494|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	263494-263523	30	NZ_CP028980	Lactobacillus plantarum strain LQ80 plasmid pLQ803, complete sequence	13783-13812	8	0.733
NZ_CP040010_2	2.4|263692|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	263692-263721	30	NZ_CP041094	Klebsiella pneumoniae subsp. pneumoniae strain KPCTRSRTH01 plasmid unnamed2, complete sequence	100952-100981	8	0.733
NZ_CP040010_2	2.4|263692|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	263692-263721	30	MK649828	Klebsiella pneumoniae strain 1675479 plasmid p1675479_1, complete sequence	100509-100538	8	0.733
NZ_CP040010_2	2.5|263758|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	263758-263787	30	NZ_CP031070	Bacillus sp. JAS24-2 plasmid pl278, complete sequence	73971-74000	8	0.733
NZ_CP040010_2	2.7|263890|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	263890-263919	30	NZ_CP013524	Rhizobium phaseoli strain R744 plasmid pRphaR744b, complete sequence	150229-150258	8	0.733
NZ_CP040010_2	2.7|263890|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	263890-263919	30	NZ_CP013553	Rhizobium phaseoli strain N931 plasmid pRphaN931a, complete sequence	158863-158892	8	0.733
NZ_CP040010_2	2.7|263890|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	263890-263919	30	NZ_CP013586	Rhizobium phaseoli strain N161 plasmid pRphaN161a, complete sequence	164378-164407	8	0.733
NZ_CP040010_2	2.7|263890|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	263890-263919	30	NZ_CP013559	Rhizobium phaseoli strain N841 plasmid pRphaN841b, complete sequence	161082-161111	8	0.733
NZ_CP040010_2	2.7|263890|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	263890-263919	30	NZ_CP013528	Rhizobium phaseoli strain R723 plasmid pRphaR723a, complete sequence	159621-159650	8	0.733
NZ_CP040010_2	2.7|263890|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	263890-263919	30	NZ_CP013564	Rhizobium phaseoli strain N831 plasmid pRphaN831a, complete sequence	158863-158892	8	0.733
NZ_CP040010_2	2.7|263890|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	263890-263919	30	NZ_CP013581	Rhizobium phaseoli strain N261 plasmid pRphaN261a, complete sequence	159621-159650	8	0.733
NZ_CP040010_2	2.8|263956|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	263956-263985	30	AP013481	Uncultured Mediterranean phage uvMED DNA, complete genome, group G18, isolate: uvMED-CGR-U-MedDCM-OCT-S44-C29	15811-15840	8	0.733
NZ_CP040010_2	2.8|263956|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	263956-263985	30	LT599585	Pseudomonas veronii 1YdBTEX2 genome assembly, plasmid: PVE_plasmid	368864-368893	8	0.733
NZ_CP040010_2	2.11|264154|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	264154-264183	30	NZ_CP041094	Klebsiella pneumoniae subsp. pneumoniae strain KPCTRSRTH01 plasmid unnamed2, complete sequence	100952-100981	8	0.733
NZ_CP040010_2	2.11|264154|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	264154-264183	30	MK649828	Klebsiella pneumoniae strain 1675479 plasmid p1675479_1, complete sequence	100509-100538	8	0.733
NZ_CP040010_2	2.12|264220|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	264220-264249	30	MH538193	Bacillus phage Saddex, complete genome	133887-133916	8	0.733
NZ_CP040010_2	2.12|264220|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	264220-264249	30	MN038176	Bacillus phage Phireball, complete genome	132549-132578	8	0.733
NZ_CP040010_2	2.12|264220|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	264220-264249	30	MN693185	Marine virus AFVG_25M398, complete genome	47846-47875	8	0.733
NZ_CP040010_2	2.12|264220|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	264220-264249	30	NC_031070	Bacillus phage Nemo, complete genome	133563-133592	8	0.733
NZ_CP040010_2	2.12|264220|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	264220-264249	30	KJ489399	Bacillus phage Hakuna, complete genome	131178-131207	8	0.733
NZ_CP040010_2	2.12|264220|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	264220-264249	30	NC_031027	Bacillus phage SageFayge, complete genome	132393-132422	8	0.733
NZ_CP040010_2	2.12|264220|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	264220-264249	30	KT207918	Bacillus phage Eyuki, complete genome	132605-132634	8	0.733
NZ_CP040010_2	2.12|264220|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	264220-264249	30	MF288919	Bacillus phage AaronPhadgers, complete genome	132523-132552	8	0.733
NZ_CP040010_2	2.12|264220|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	264220-264249	30	KX349902	Bacillus phage Kida, complete genome	132625-132654	8	0.733
NZ_CP040010_2	2.12|264220|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	264220-264249	30	NC_031024	Bacillus phage Belinda, complete genome	133335-133364	8	0.733
NZ_CP040010_2	2.12|264220|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	264220-264249	30	MG763894	Bacillus phage HonestAbe, complete genome	132299-132328	8	0.733
NZ_CP040010_2	2.12|264220|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	264220-264249	30	MF288917	Bacillus phage PPIsBest, complete genome	132805-132834	8	0.733
NZ_CP040010_2	2.12|264220|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	264220-264249	30	MN038179	Bacillus phage ALPS, complete genome	132712-132741	8	0.733
NZ_CP040010_2	2.12|264220|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	264220-264249	30	KU737351	Bacillus phage NotTheCreek, complete genome	132837-132866	8	0.733
NZ_CP040010_2	2.12|264220|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	264220-264249	30	NC_031116	Bacillus phage Zuko, complete genome	133581-133610	8	0.733
NZ_CP040010_2	2.12|264220|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	264220-264249	30	MH638311	Bacillus phage OmnioDeoPrimus, complete genome	132475-132504	8	0.733
NZ_CP040010_2	2.12|264220|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	264220-264249	30	NC_031054	Bacillus phage DirtyBetty, complete genome	132594-132623	8	0.733
NZ_CP040010_2	2.12|264220|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	264220-264249	30	MF288918	Bacillus phage Bubs, complete genome	133601-133630	8	0.733
NZ_CP040010_2	2.7|263890|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	263890-263919	30	NZ_CP021032	Rhizobium sp. NXC14 plasmid pRspNXC14b, complete sequence	38209-38238	9	0.7
NZ_CP040010_2	2.7|263890|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	263890-263919	30	NC_007766	Rhizobium etli CFN 42 plasmid p42f, complete sequence	552246-552275	9	0.7
NZ_CP040010_2	2.7|263890|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	263890-263919	30	NZ_CP020911	Rhizobium etli strain NXC12 plasmid pRetNXC12e, complete sequence	836894-836923	9	0.7
NZ_CP040010_2	2.7|263890|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	263890-263919	30	NZ_CP013597	Rhizobium sp. N741 plasmid pRspN741b, complete sequence	122307-122336	9	0.7
NZ_CP040010_2	2.7|263890|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	263890-263919	30	NZ_CP013538	Rhizobium phaseoli strain R630 plasmid pRphaR630a, complete sequence	153029-153058	9	0.7
NZ_CP040010_2	2.7|263890|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	263890-263919	30	NZ_CP013501	Rhizobium esperanzae strain N561 plasmid pRspN561a, complete sequence	122673-122702	9	0.7
NZ_CP040010_2	2.7|263890|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	263890-263919	30	NZ_CP013507	Rhizobium sp. N1341 plasmid pRspN1341b, complete sequence	122307-122336	9	0.7
NZ_CP040010_2	2.7|263890|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	263890-263919	30	NZ_CP013518	Rhizobium sp. N113 plasmid pRspN113a, complete sequence	122673-122702	9	0.7
NZ_CP040010_2	2.7|263890|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	263890-263919	30	NZ_CP013491	Rhizobium sp. N6212 plasmid pRspN6212a, complete sequence	122673-122702	9	0.7
NZ_CP040010_2	2.7|263890|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	263890-263919	30	NZ_CP013513	Rhizobium sp. N1314 plasmid pRspN1314b, complete sequence	143544-143573	9	0.7
NZ_CP040010_2	2.7|263890|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	263890-263919	30	NZ_CP013496	Rhizobium sp. N621 plasmid pRspN621a, complete sequence	122673-122702	9	0.7
NZ_CP040010_2	2.7|263890|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	263890-263919	30	NZ_CP013591	Rhizobium sp. N871 plasmid pRspN871a, complete sequence	122673-122702	9	0.7
NZ_CP040010_2	2.7|263890|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	263890-263919	30	NZ_CP013603	Rhizobium sp. N731 plasmid pRspN731b, complete sequence	143544-143573	9	0.7
NZ_CP040010_2	2.7|263890|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	263890-263919	30	JF412301	EBPR siphovirus 6, partial sequence	3056-3085	9	0.7
NZ_CP040010_2	2.7|263890|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT	263890-263919	30	NC_021911	Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence	248616-248645	9	0.7

1. spacer 2.12|264220|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to NC_015598 (Lactobacillus kefiranofaciens ZW3 plasmid pWW1, complete sequence) position: , mismatch: 6, identity: 0.8

actcctccttgattactttcttgataaacc	CRISPR spacer
acgcctccttgattagtttcttgtttatca	Protospacer
** ************ ******* * * * 

2. spacer 2.12|264220|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to MK448743 (Streptococcus phage Javan371, complete genome) position: , mismatch: 6, identity: 0.8

actcctccttgattactttcttgataaacc	CRISPR spacer
agtgtttcttgattacgttcgtgataaacc	Protospacer
* * .*.********* *** *********

3. spacer 2.1|263494|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LN906635 (Lactobacillus reuteri plasmid p53608_1, complete genome, strain ATCC 53608) position: , mismatch: 7, identity: 0.767

cgaagaagccagcatcctttgcaataaact	CRISPR spacer
gccagaagccagcatcattttcaataatat	Protospacer
   ************* *** ******  *

4. spacer 2.12|264220|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to MK448920 (Streptococcus phage Javan372, complete genome) position: , mismatch: 7, identity: 0.767

actcctccttgattactttcttgataaacc	CRISPR spacer
agcgtttcttgattacgttcgtgataaacc	Protospacer
* . .*.********* *** *********

5. spacer 2.1|263494|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028980 (Lactobacillus plantarum strain LQ80 plasmid pLQ803, complete sequence) position: , mismatch: 8, identity: 0.733

cgaagaagccagcatcctttgcaataaact	CRISPR spacer
ctgagaaaccagcatcctttgcaattctgg	Protospacer
* .****.*****************     

6. spacer 2.4|263692|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041094 (Klebsiella pneumoniae subsp. pneumoniae strain KPCTRSRTH01 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

acgtggtctgagggtaagtatccctgcaca	CRISPR spacer
tgatggtgtgagtgtaagtatccctgtgaa	Protospacer
  .**** **** *************.. *

7. spacer 2.4|263692|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to MK649828 (Klebsiella pneumoniae strain 1675479 plasmid p1675479_1, complete sequence) position: , mismatch: 8, identity: 0.733

acgtggtctgagggtaagtatccctgcaca	CRISPR spacer
tgatggtgtgagtgtaagtatccctgtgaa	Protospacer
  .**** **** *************.. *

8. spacer 2.5|263758|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031070 (Bacillus sp. JAS24-2 plasmid pl278, complete sequence) position: , mismatch: 8, identity: 0.733

caccaccaaatgacatcatgagattatgga	CRISPR spacer
aaattgcaaatgatatcatgagattattaa	Protospacer
 * .  *******.************* .*

9. spacer 2.7|263890|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013524 (Rhizobium phaseoli strain R744 plasmid pRphaR744b, complete sequence) position: , mismatch: 8, identity: 0.733

actgatcacgggcgttttcacgcttttcaa	CRISPR spacer
tttcgccgcgggcgttttcacgcttctcat	Protospacer
 .* ..*.*****************.*** 

10. spacer 2.7|263890|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013553 (Rhizobium phaseoli strain N931 plasmid pRphaN931a, complete sequence) position: , mismatch: 8, identity: 0.733

actgatcacgggcgttttcacgcttttcaa	CRISPR spacer
tttcgccgcgggcgttttcacgcttctcat	Protospacer
 .* ..*.*****************.*** 

11. spacer 2.7|263890|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013586 (Rhizobium phaseoli strain N161 plasmid pRphaN161a, complete sequence) position: , mismatch: 8, identity: 0.733

actgatcacgggcgttttcacgcttttcaa	CRISPR spacer
tttcgccgcgggcgttttcacgcttctcat	Protospacer
 .* ..*.*****************.*** 

12. spacer 2.7|263890|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013559 (Rhizobium phaseoli strain N841 plasmid pRphaN841b, complete sequence) position: , mismatch: 8, identity: 0.733

actgatcacgggcgttttcacgcttttcaa	CRISPR spacer
tttcgccgcgggcgttttcacgcttctcat	Protospacer
 .* ..*.*****************.*** 

13. spacer 2.7|263890|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013528 (Rhizobium phaseoli strain R723 plasmid pRphaR723a, complete sequence) position: , mismatch: 8, identity: 0.733

actgatcacgggcgttttcacgcttttcaa	CRISPR spacer
tttcgccgcgggcgttttcacgcttctcat	Protospacer
 .* ..*.*****************.*** 

14. spacer 2.7|263890|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013564 (Rhizobium phaseoli strain N831 plasmid pRphaN831a, complete sequence) position: , mismatch: 8, identity: 0.733

actgatcacgggcgttttcacgcttttcaa	CRISPR spacer
tttcgccgcgggcgttttcacgcttctcat	Protospacer
 .* ..*.*****************.*** 

15. spacer 2.7|263890|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013581 (Rhizobium phaseoli strain N261 plasmid pRphaN261a, complete sequence) position: , mismatch: 8, identity: 0.733

actgatcacgggcgttttcacgcttttcaa	CRISPR spacer
tttcgccgcgggcgttttcacgcttctcat	Protospacer
 .* ..*.*****************.*** 

16. spacer 2.8|263956|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to AP013481 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G18, isolate: uvMED-CGR-U-MedDCM-OCT-S44-C29) position: , mismatch: 8, identity: 0.733

tgctacttttatttctcaaaactttactag	CRISPR spacer
cttttgttttatttctaaaaactttacttc	Protospacer
. .*  ********** ***********  

17. spacer 2.8|263956|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to LT599585 (Pseudomonas veronii 1YdBTEX2 genome assembly, plasmid: PVE_plasmid) position: , mismatch: 8, identity: 0.733

tgctacttttatttctcaaaactttactag	CRISPR spacer
gaatatttttatttctcaaagctttatgtg	Protospacer
 . **.**************.*****.  *

18. spacer 2.11|264154|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041094 (Klebsiella pneumoniae subsp. pneumoniae strain KPCTRSRTH01 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

acgtggtctgagggtaagtatccctgcaca	CRISPR spacer
tgatggtgtgagtgtaagtatccctgtgaa	Protospacer
  .**** **** *************.. *

19. spacer 2.11|264154|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to MK649828 (Klebsiella pneumoniae strain 1675479 plasmid p1675479_1, complete sequence) position: , mismatch: 8, identity: 0.733

acgtggtctgagggtaagtatccctgcaca	CRISPR spacer
tgatggtgtgagtgtaagtatccctgtgaa	Protospacer
  .**** **** *************.. *

20. spacer 2.12|264220|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to MH538193 (Bacillus phage Saddex, complete genome) position: , mismatch: 8, identity: 0.733

actcctccttgattactttcttgataaacc	CRISPR spacer
tgtaatccttgattgctttcttgatatcca	Protospacer
  *  *********.***********  * 

21. spacer 2.12|264220|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to MN038176 (Bacillus phage Phireball, complete genome) position: , mismatch: 8, identity: 0.733

actcctccttgattactttcttgataaacc	CRISPR spacer
tgtaatccttgattgctttcttgatatcca	Protospacer
  *  *********.***********  * 

22. spacer 2.12|264220|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to MN693185 (Marine virus AFVG_25M398, complete genome) position: , mismatch: 8, identity: 0.733

actcctccttgattactttcttgataaacc	CRISPR spacer
tttcctcctttattactttattgattataa	Protospacer
 .******** ******** ***** *   

23. spacer 2.12|264220|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to NC_031070 (Bacillus phage Nemo, complete genome) position: , mismatch: 8, identity: 0.733

actcctccttgattactttcttgataaacc	CRISPR spacer
cgtaatccttgattgctttcttgatatcca	Protospacer
  *  *********.***********  * 

24. spacer 2.12|264220|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to KJ489399 (Bacillus phage Hakuna, complete genome) position: , mismatch: 8, identity: 0.733

actcctccttgattactttcttgataaacc	CRISPR spacer
tgtaatccttgattgctttcttgatatcca	Protospacer
  *  *********.***********  * 

25. spacer 2.12|264220|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to NC_031027 (Bacillus phage SageFayge, complete genome) position: , mismatch: 8, identity: 0.733

actcctccttgattactttcttgataaacc	CRISPR spacer
tgtaatccttgattgctttcttgatatcca	Protospacer
  *  *********.***********  * 

26. spacer 2.12|264220|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to KT207918 (Bacillus phage Eyuki, complete genome) position: , mismatch: 8, identity: 0.733

actcctccttgattactttcttgataaacc	CRISPR spacer
tgtaatccttgattgctttcttgatatcca	Protospacer
  *  *********.***********  * 

27. spacer 2.12|264220|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to MF288919 (Bacillus phage AaronPhadgers, complete genome) position: , mismatch: 8, identity: 0.733

actcctccttgattactttcttgataaacc	CRISPR spacer
tgtaatccttgattgctttcttgatatcca	Protospacer
  *  *********.***********  * 

28. spacer 2.12|264220|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to KX349902 (Bacillus phage Kida, complete genome) position: , mismatch: 8, identity: 0.733

actcctccttgattactttcttgataaacc	CRISPR spacer
tgtaatccttgattgctttcttgatatcca	Protospacer
  *  *********.***********  * 

29. spacer 2.12|264220|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to NC_031024 (Bacillus phage Belinda, complete genome) position: , mismatch: 8, identity: 0.733

actcctccttgattactttcttgataaacc	CRISPR spacer
tgtaatccttgattgctttcttgatatcca	Protospacer
  *  *********.***********  * 

30. spacer 2.12|264220|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to MG763894 (Bacillus phage HonestAbe, complete genome) position: , mismatch: 8, identity: 0.733

actcctccttgattactttcttgataaacc	CRISPR spacer
tgtaatccttgattgctttcttgatatcca	Protospacer
  *  *********.***********  * 

31. spacer 2.12|264220|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to MF288917 (Bacillus phage PPIsBest, complete genome) position: , mismatch: 8, identity: 0.733

actcctccttgattactttcttgataaacc	CRISPR spacer
tgtaatccttgattgctttcttgatatcca	Protospacer
  *  *********.***********  * 

32. spacer 2.12|264220|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to MN038179 (Bacillus phage ALPS, complete genome) position: , mismatch: 8, identity: 0.733

actcctccttgattactttcttgataaacc	CRISPR spacer
tgtaatccttgattgctttcttgatatcca	Protospacer
  *  *********.***********  * 

33. spacer 2.12|264220|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to KU737351 (Bacillus phage NotTheCreek, complete genome) position: , mismatch: 8, identity: 0.733

actcctccttgattactttcttgataaacc	CRISPR spacer
tgtaatccttgattgctttcttgatatcca	Protospacer
  *  *********.***********  * 

34. spacer 2.12|264220|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to NC_031116 (Bacillus phage Zuko, complete genome) position: , mismatch: 8, identity: 0.733

actcctccttgattactttcttgataaacc	CRISPR spacer
tgtaatccttgattgctttcttgatatcca	Protospacer
  *  *********.***********  * 

35. spacer 2.12|264220|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to MH638311 (Bacillus phage OmnioDeoPrimus, complete genome) position: , mismatch: 8, identity: 0.733

actcctccttgattactttcttgataaacc	CRISPR spacer
tgtagtccttgattgctttcttgatatcca	Protospacer
  *  *********.***********  * 

36. spacer 2.12|264220|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to NC_031054 (Bacillus phage DirtyBetty, complete genome) position: , mismatch: 8, identity: 0.733

actcctccttgattactttcttgataaacc	CRISPR spacer
tgtaatccttgattgctttcttgatatcca	Protospacer
  *  *********.***********  * 

37. spacer 2.12|264220|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to MF288918 (Bacillus phage Bubs, complete genome) position: , mismatch: 8, identity: 0.733

actcctccttgattactttcttgataaacc	CRISPR spacer
cgtaatccttgattgctttcttgatatcca	Protospacer
  *  *********.***********  * 

38. spacer 2.7|263890|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021032 (Rhizobium sp. NXC14 plasmid pRspNXC14b, complete sequence) position: , mismatch: 9, identity: 0.7

actgatcacgggcgttttcacgcttttcaa	CRISPR spacer
cgccctcacgggcgctttcacgctgttcct	Protospacer
  .  *********.********* ***  

39. spacer 2.7|263890|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to NC_007766 (Rhizobium etli CFN 42 plasmid p42f, complete sequence) position: , mismatch: 9, identity: 0.7

actgatcacgggcgttttcacgcttttcaa	CRISPR spacer
cttcgcagcgggcgttttcacgcttctcat	Protospacer
 .* .. .*****************.*** 

40. spacer 2.7|263890|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020911 (Rhizobium etli strain NXC12 plasmid pRetNXC12e, complete sequence) position: , mismatch: 9, identity: 0.7

actgatcacgggcgttttcacgcttttcaa	CRISPR spacer
cttcgcagcgggcgttttcacgcttctcat	Protospacer
 .* .. .*****************.*** 

41. spacer 2.7|263890|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013597 (Rhizobium sp. N741 plasmid pRspN741b, complete sequence) position: , mismatch: 9, identity: 0.7

actgatcacgggcgttttcacgcttttcaa	CRISPR spacer
tttcgcagcgggcgttttcacgcttctcat	Protospacer
 .* .. .*****************.*** 

42. spacer 2.7|263890|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013538 (Rhizobium phaseoli strain R630 plasmid pRphaR630a, complete sequence) position: , mismatch: 9, identity: 0.7

actgatcacgggcgttttcacgcttttcaa	CRISPR spacer
tttcgcagcgggcgttttcacgcttctcat	Protospacer
 .* .. .*****************.*** 

43. spacer 2.7|263890|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013501 (Rhizobium esperanzae strain N561 plasmid pRspN561a, complete sequence) position: , mismatch: 9, identity: 0.7

actgatcacgggcgttttcacgcttttcaa	CRISPR spacer
tttcgcagcgggcgttttcacgcttctcat	Protospacer
 .* .. .*****************.*** 

44. spacer 2.7|263890|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013507 (Rhizobium sp. N1341 plasmid pRspN1341b, complete sequence) position: , mismatch: 9, identity: 0.7

actgatcacgggcgttttcacgcttttcaa	CRISPR spacer
tttcgcagcgggcgttttcacgcttctcat	Protospacer
 .* .. .*****************.*** 

45. spacer 2.7|263890|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013518 (Rhizobium sp. N113 plasmid pRspN113a, complete sequence) position: , mismatch: 9, identity: 0.7

actgatcacgggcgttttcacgcttttcaa	CRISPR spacer
tttcgcagcgggcgttttcacgcttctcat	Protospacer
 .* .. .*****************.*** 

46. spacer 2.7|263890|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013491 (Rhizobium sp. N6212 plasmid pRspN6212a, complete sequence) position: , mismatch: 9, identity: 0.7

actgatcacgggcgttttcacgcttttcaa	CRISPR spacer
tttcgcagcgggcgttttcacgcttctcat	Protospacer
 .* .. .*****************.*** 

47. spacer 2.7|263890|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013513 (Rhizobium sp. N1314 plasmid pRspN1314b, complete sequence) position: , mismatch: 9, identity: 0.7

actgatcacgggcgttttcacgcttttcaa	CRISPR spacer
tttcgcagcgggcgttttcacgcttctcat	Protospacer
 .* .. .*****************.*** 

48. spacer 2.7|263890|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013496 (Rhizobium sp. N621 plasmid pRspN621a, complete sequence) position: , mismatch: 9, identity: 0.7

actgatcacgggcgttttcacgcttttcaa	CRISPR spacer
tttcgcagcgggcgttttcacgcttctcat	Protospacer
 .* .. .*****************.*** 

49. spacer 2.7|263890|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013591 (Rhizobium sp. N871 plasmid pRspN871a, complete sequence) position: , mismatch: 9, identity: 0.7

actgatcacgggcgttttcacgcttttcaa	CRISPR spacer
tttcgcagcgggcgttttcacgcttctcat	Protospacer
 .* .. .*****************.*** 

50. spacer 2.7|263890|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013603 (Rhizobium sp. N731 plasmid pRspN731b, complete sequence) position: , mismatch: 9, identity: 0.7

actgatcacgggcgttttcacgcttttcaa	CRISPR spacer
tttcgcagcgggcgttttcacgcttctcat	Protospacer
 .* .. .*****************.*** 

51. spacer 2.7|263890|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to JF412301 (EBPR siphovirus 6, partial sequence) position: , mismatch: 9, identity: 0.7

actgatcacgggcgttttcacgcttttcaa	CRISPR spacer
cttgttcacgggcgtgttcacgcttgaggg	Protospacer
 .** ********** *********   ..

52. spacer 2.7|263890|30|NZ_CP040010|PILER-CR,CRISPRCasFinder,CRT matches to NC_021911 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1f, complete sequence) position: , mismatch: 9, identity: 0.7

actgatcacgggcgttttcacgcttttcaa	CRISPR spacer
cttcgcagcgggcgttttcacgcttctcat	Protospacer
 .* .. .*****************.***