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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP053229 Enterocloster bolteae strain CBBP-2 chromosome, complete genome 9 crisprs RT,cas3,csa3,DEDDh,DinG,WYL,cas2,cas1,cas4,cas7,cas8c,cas5,PD-DExK 2 7 15 1
NZ_CP053230 Enterocloster bolteae strain CBBP-2 plasmid pCbo51, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP053229
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP053229_1 636618-637583 Orphan NA
14 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP053229_2 2979374-2979691 Orphan NA
7 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP053229_3 3047844-3047979 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP053229_4 3101976-3102183 Orphan NA
3 spacers
WYL,RT

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP053229_5 3347521-3347816 Orphan NA
6 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP053229_6 4884588-4885895 TypeI NA
19 spacers
cas2,cas1,cas4,cas7,cas8c,cas5,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP053229_7 4974281-4974356 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP053229_8 5078702-5078805 Unclear NA
1 spacers
cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP053229_9 5195492-5195591 Orphan NA
1 spacers
DEDDh

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP053229_6 6.4|4884824|34|NZ_CP053229|CRISPRCasFinder,CRT,PILER-CR 4884824-4884857 34 NZ_CP053229.1 3918023-3918056 0 1.0
NZ_CP053229_6 6.13|4885427|34|NZ_CP053229|CRISPRCasFinder,CRT,PILER-CR 4885427-4885460 34 NZ_CP053229.1 3921072-3921105 0 1.0

1. spacer 6.4|4884824|34|NZ_CP053229|CRISPRCasFinder,CRT,PILER-CR matches to position: 3918023-3918056, mismatch: 0, identity: 1.0

tccagtagattcaagagccggccaaactcctcct	CRISPR spacer
tccagtagattcaagagccggccaaactcctcct	Protospacer
**********************************

2. spacer 6.13|4885427|34|NZ_CP053229|CRISPRCasFinder,CRT,PILER-CR matches to position: 3921072-3921105, mismatch: 0, identity: 1.0

tgaattggaggcgcgattaaaactctgtatagaa	CRISPR spacer
tgaattggaggcgcgattaaaactctgtatagaa	Protospacer
**********************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP053229_7 7.1|4974305|28|NZ_CP053229|CRISPRCasFinder 4974305-4974332 28 NZ_CP015327 Bacillus filamentosus strain Hbe603 plasmid pBEH5, complete sequence 5437-5464 5 0.821
NZ_CP053229_5 5.5|3347727|30|NZ_CP053229|CRT 3347727-3347756 30 AY190604 Halovirus HF1, complete genome 57968-57997 9 0.7
NZ_CP053229_5 5.5|3347727|30|NZ_CP053229|CRT 3347727-3347756 30 NC_003345 Halorubrum phage HF2, complete genome 59739-59768 9 0.7
NZ_CP053229_5 5.5|3347727|30|NZ_CP053229|CRT 3347727-3347756 30 MN901520 Halorubrum coriense virus Hardycor2, complete genome 17908-17937 9 0.7
NZ_CP053229_6 6.5|4884891|34|NZ_CP053229|CRISPRCasFinder,CRT,PILER-CR 4884891-4884924 34 MK483107 Vibrio phage vB_VpP_BA6, complete genome 41951-41984 9 0.735
NZ_CP053229_1 1.4|636850|34|NZ_CP053229|PILER-CR,CRISPRCasFinder,CRT 636850-636883 34 NZ_CP032533 Bacillus megaterium NCT-2 plasmid pNCT2_5, complete sequence 3026-3059 10 0.706
NZ_CP053229_1 1.11|637319|33|NZ_CP053229|PILER-CR,CRISPRCasFinder,CRT 637319-637351 33 NZ_CP039632 Pseudomonas veronii strain Pvy plasmid unnamed, complete sequence 53782-53814 10 0.697
NZ_CP053229_1 1.11|637319|33|NZ_CP053229|PILER-CR,CRISPRCasFinder,CRT 637319-637351 33 NZ_CP007510 Pseudomonas stutzeri strain 19SMN4 plasmid pLIB119, complete plasmid 55529-55561 10 0.697
NZ_CP053229_6 6.7|4885024|33|NZ_CP053229|CRISPRCasFinder,CRT,PILER-CR 4885024-4885056 33 NC_013792 Bacillus pseudofirmus OF4 plasmid pBpOF4-01, complete sequence 126308-126340 10 0.697
NZ_CP053229_1 1.6|636985|34|NZ_CP053229|PILER-CR,CRISPRCasFinder,CRT 636985-637018 34 NZ_CP025472 Enterococcus mundtii strain Pe161 plasmid pPe16101, complete sequence 324-357 11 0.676
NZ_CP053229_1 1.6|636985|34|NZ_CP053229|PILER-CR,CRISPRCasFinder,CRT 636985-637018 34 NZ_CP029067 Enterococcus mundtii strain Pe103 plasmid pPe10301, complete sequence 21371-21404 11 0.676

1. spacer 7.1|4974305|28|NZ_CP053229|CRISPRCasFinder matches to NZ_CP015327 (Bacillus filamentosus strain Hbe603 plasmid pBEH5, complete sequence) position: , mismatch: 5, identity: 0.821

tgattccctatctgtcctgtttccctat	CRISPR spacer
acattccttatatgtcctgtttccctgt	Protospacer
  *****.*** **************.*

2. spacer 5.5|3347727|30|NZ_CP053229|CRT matches to AY190604 (Halovirus HF1, complete genome) position: , mismatch: 9, identity: 0.7

aaccgccctggccgcggttattgtcgcggt	CRISPR spacer
ggtgatgctggccccggttattgacgcggt	Protospacer
... .. ****** ********* ******

3. spacer 5.5|3347727|30|NZ_CP053229|CRT matches to NC_003345 (Halorubrum phage HF2, complete genome) position: , mismatch: 9, identity: 0.7

aaccgccctggccgcggttattgtcgcggt	CRISPR spacer
ggtgatgctggccccggttattgacgcggt	Protospacer
... .. ****** ********* ******

4. spacer 5.5|3347727|30|NZ_CP053229|CRT matches to MN901520 (Halorubrum coriense virus Hardycor2, complete genome) position: , mismatch: 9, identity: 0.7

aaccgccctggccgcggttattgtcgcggt	CRISPR spacer
ggggatgctggccccggttattgacgcggt	Protospacer
..  .. ****** ********* ******

5. spacer 6.5|4884891|34|NZ_CP053229|CRISPRCasFinder,CRT,PILER-CR matches to MK483107 (Vibrio phage vB_VpP_BA6, complete genome) position: , mismatch: 9, identity: 0.735

ccagcagctgcttgcacagcagagggaacaaaac	CRISPR spacer
ccagcagctgcttctacagcagagcttactgaga	Protospacer
************* .*********   ** .*. 

6. spacer 1.4|636850|34|NZ_CP053229|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032533 (Bacillus megaterium NCT-2 plasmid pNCT2_5, complete sequence) position: , mismatch: 10, identity: 0.706

taatgtatcccctatcatggagaaaagcgaaaaa	CRISPR spacer
gtagaagggccttatcatggataaaagcgaaaaa	Protospacer
  * . .  **.********* ************

7. spacer 1.11|637319|33|NZ_CP053229|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039632 (Pseudomonas veronii strain Pvy plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.697

ttcttaaattccttggccatcccttccataaac	CRISPR spacer
gctcccacctccttggccatcacttcgataaac	Protospacer
 .... * .************ **** ******

8. spacer 1.11|637319|33|NZ_CP053229|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007510 (Pseudomonas stutzeri strain 19SMN4 plasmid pLIB119, complete plasmid) position: , mismatch: 10, identity: 0.697

ttcttaaattccttggccatcccttccataaac	CRISPR spacer
gctcccacctccttggccatcacttcgataaac	Protospacer
 .... * .************ **** ******

9. spacer 6.7|4885024|33|NZ_CP053229|CRISPRCasFinder,CRT,PILER-CR matches to NC_013792 (Bacillus pseudofirmus OF4 plasmid pBpOF4-01, complete sequence) position: , mismatch: 10, identity: 0.697

caatctttaaatcggtttgcatctgaaaatgtg	CRISPR spacer
atactcctaaagcggtttgcatttgaaaatggt	Protospacer
  *....**** **********.********  

10. spacer 1.6|636985|34|NZ_CP053229|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025472 (Enterococcus mundtii strain Pe161 plasmid pPe16101, complete sequence) position: , mismatch: 11, identity: 0.676

gggtgtgaaatagtcaatcggctttttggtaacc	CRISPR spacer
ttctaaaaaatagtcgatcggctttttcgtataa	Protospacer
   *. .********.*********** ***   

11. spacer 1.6|636985|34|NZ_CP053229|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029067 (Enterococcus mundtii strain Pe103 plasmid pPe10301, complete sequence) position: , mismatch: 11, identity: 0.676

gggtgtgaaatagtcaatcggctttttggtaacc	CRISPR spacer
ttctaaaaaatagtcgatcggctttttcgtataa	Protospacer
   *. .********.*********** ***   

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 237717 : 300262 88 Clostridium_phage(43.33%) capsid,tail,portal,holin,terminase,transposase,coat,plate NA
DBSCAN-SWA_2 1180444 : 1256851 108 Faecalibacterium_phage(39.22%) capsid,portal,protease,integrase,terminase,tail,head,plate attL 1202041:1202060|attR 1203852:1203871
DBSCAN-SWA_3 1548909 : 1567365 27 Clostridium_phage(21.43%) terminase,integrase attL 1541888:1541902|attR 1563960:1563974
DBSCAN-SWA_4 3856127 : 3904738 52 Feldmannia_irregularis_virus(12.5%) capsid,holin,protease,transposase,tail NA
DBSCAN-SWA_5 3911264 : 3924994 21 Paenibacillus_phage(36.36%) NA NA
DBSCAN-SWA_6 3990983 : 3999653 7 Staphylococcus_phage(50.0%) transposase NA
DBSCAN-SWA_7 4166943 : 4195789 42 Clostridium_phage(45.45%) capsid,holin,terminase,integrase attL 4179755:4179773|attR 4190322:4190340
DBSCAN-SWA_8 4200179 : 4211487 14 Clostridium_phage(25.0%) NA NA
DBSCAN-SWA_9 5451436 : 5476708 22 Faecalibacterium_phage(26.32%) portal,protease,terminase,tail,head NA
DBSCAN-SWA_10 5480587 : 5498581 25 Faecalibacterium_phage(46.67%) tRNA NA
DBSCAN-SWA_11 5578598 : 5598340 30 Faecalibacterium_phage(31.25%) tRNA NA
DBSCAN-SWA_12 5610822 : 5638191 23 Faecalibacterium_phage(27.78%) portal,protease,terminase,tail,head NA
DBSCAN-SWA_13 5946102 : 5962425 17 Streptococcus_phage(91.67%) NA NA
DBSCAN-SWA_14 6092429 : 6143282 40 Erysipelothrix_phage(30.77%) transposase,integrase,tRNA attL 6089811:6089826|attR 6108120:6108135
DBSCAN-SWA_15 6286553 : 6294557 8 Streptococcus_phage(33.33%) integrase attL 6288059:6288073|attR 6304245:6304259
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Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP053229.1|WP_118024433.1|3923255_3923456_+|hypothetical-protein 3923255_3923456_+ 66 aa aa NA NA NA 3911264-3924994 yes