CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP053286	Serratia marcescens strain FZSF02 chromosome, complete genome	3 crisprs	DEDDh,cas1,cas3f,cas8f,cas5f,cas7f,cas6f,WYL,DinG,csa3,cas3,RT	0	27	9	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP053286_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053286_1

468616-468943

TypeI-F

I-F

Consensus_repeat	Method
GTTCACTGCCGTACAGGCAGCTTAGAAA	PILER-CR
GTTCACTGCCGTACAGGCAGCTTAGAAA	CRISPRCasFinder
GTTCACTGCCGTACAGGCAGCTTAGAAA	CRT

5 spacers

cas1,cas3f,cas8f,cas5f,cas7f,cas6f

The CRISPR arrays of NZ_CP053286_1

>merge|NZ_CP053286|1|468616-468943|PILER-CR,CRISPRCasFinder,CRT
GTTCACTGCCGTACAGGCAGCTTAGAAAGATTCGAACTTGCGTCCGCCGGCCTCGTCGATGTTCACTGCCGTACAGGCAGCTTAGAAAAATAGATGGCCCAGTGACTGATGAAACTCTGGGTTCACTGCCGTACAGGCAGCTTAGAAAAAGTCGCGCTACTGCGCAAGCACCTCGAAGACGTTCACTGCCGTACAGGCAGCTTAGAAAGTCTCCGTCGGCAACGGTTCCCATCGGATTTTGTTCACTGCCGTACAGGCAGCTTAGAAATTTTCGACCATGTTCACGGTATCGACTTCGATGTTCACTGCCGTACAGGCAGATCTAATG

>NZ_CP053286|1|1|468616-468883|PILER-CR
GTTCACTGCCGTACAGGCAGCTTAGAAA	GATTCGAACTTGCGTCCGCCGGCCTCGTCGAT
GTTCACTGCCGTACAGGCAGCTTAGAAA	AATAGATGGCCCAGTGACTGATGAAACTCTGG
GTTCACTGCCGTACAGGCAGCTTAGAAA	AAGTCGCGCTACTGCGCAAGCACCTCGAAGAC
GTTCACTGCCGTACAGGCAGCTTAGAAA	GTCTCCGTCGGCAACGGTTCCCATCGGATTTT
GTTCACTGCCGTACAGGCAGCTTAGAAA

>NZ_CP053286|1|1|468616-468943|CRISPRCasFinder
GTTCACTGCCGTACAGGCAGCTTAGAAA	GATTCGAACTTGCGTCCGCCGGCCTCGTCGAT
GTTCACTGCCGTACAGGCAGCTTAGAAA	AATAGATGGCCCAGTGACTGATGAAACTCTGG
GTTCACTGCCGTACAGGCAGCTTAGAAA	AAGTCGCGCTACTGCGCAAGCACCTCGAAGAC
GTTCACTGCCGTACAGGCAGCTTAGAAA	GTCTCCGTCGGCAACGGTTCCCATCGGATTTT
GTTCACTGCCGTACAGGCAGCTTAGAAA	TTTTCGACCATGTTCACGGTATCGACTTCGAT
GTTCACTGCCGTACAGGCAGATCTAATG

>NZ_CP053286|1|1|468616-468943|CRT
GTTCACTGCCGTACAGGCAGCTTAGAAA	GATTCGAACTTGCGTCCGCCGGCCTCGTCGAT
GTTCACTGCCGTACAGGCAGCTTAGAAA	AATAGATGGCCCAGTGACTGATGAAACTCTGG
GTTCACTGCCGTACAGGCAGCTTAGAAA	AAGTCGCGCTACTGCGCAAGCACCTCGAAGAC
GTTCACTGCCGTACAGGCAGCTTAGAAA	GTCTCCGTCGGCAACGGTTCCCATCGGATTTT
GTTCACTGCCGTACAGGCAGCTTAGAAA	TTTTCGACCATGTTCACGGTATCGACTTCGAT
GTTCACTGCCGTACAGGCAGATCTAATG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053286.1\|WP_171402856.1\|481260_481815_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|378224
NZ_CP053286.1\|WP_099032700.1\|460355_460436_+\|protein-YrbN	unknown	unknown	gnl\|CDD\|380282
NZ_CP053286.1\|WP_021504239.1\|471122_471650_+\|SCP2-domain-containing-protein	unknown	unknown	gnl\|CDD\|225696
NZ_CP053286.1\|WP_171402846.1\|457087_459226_+\|polyribonucleotide-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|236995
NZ_CP053286.1\|WP_044029869.1\|466180_467335_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
NZ_CP053286.1\|WP_015376422.1\|469874_470870_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|223896
NZ_CP053286.1\|WP_171402854.1\|479280_480246_+\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	cd09676_cas5f_CAS-I-F	gnl\|CDD\|378221
NZ_CP053286.1\|WP_004933486.1\|463705_463945_+\|sulfurtransferase-like-selenium-metabolism-protein-YedF	unknown	unknown	gnl\|CDD\|236822
NZ_CP053286.1\|WP_171402849.1\|468984_469863_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|237968
NZ_CP053286.1\|WP_004933488.1\|462494_463709_+\|selenium-metabolism-membrane-protein-YedE/FdhT	unknown	unknown	gnl\|CDD\|236845
NZ_CP053286.1\|WP_004933495.1\|459354_460239_+\|lipoprotein-NlpI	unknown	unknown	gnl\|CDD\|236875
NZ_CP053286.1\|WP_171402852.1\|474297_477573_+\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|274201
NZ_CP053286.1\|WP_171402850.1\|471643_472147_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|225695
NZ_CP053286.1\|WP_171402853.1\|477946_479284_+\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	pfam09611_cas8f_CAS-I-F	gnl\|CDD\|187866
NZ_CP053286.1\|WP_004933479.1\|465227_466199_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|235136
NZ_CP053286.1\|WP_171402847.1\|460425_462348_+\|DEAD/DEAH-family-ATP-dependent-RNA-helicase	unknown	unknown	gnl\|CDD\|236941
NZ_CP053286.1\|WP_033633542.1\|463982_464996_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182505
NZ_CP053286.1\|WP_171402848.1\|467331_468474_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
NZ_CP053286.1\|WP_171402851.1\|473320_474301_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NZ_CP053286.1\|WP_171402855.1\|480258_481251_+\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222

Protein	Function_ID	Function_description	E-value
NZ_CP053286.1\|WP_171402856.1\|481260_481815_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|378224	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	2.68346e-91
NZ_CP053286.1\|WP_099032700.1\|460355_460436_+\|protein-YrbN	gnl\|CDD\|380282	NF033440, small_YrbN, protein YrbN. YrbN, a small protein of only 26 amino acids, is found in at least these genera: Escherichia, Salmonella, Enterobacter, Klebsiella, and Yersinia. It is known to be expressed in E. coli.	3.42773e-08
NZ_CP053286.1\|WP_021504239.1\|471122_471650_+\|SCP2-domain-containing-protein	gnl\|CDD\|225696	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism].	1.71415e-71
NZ_CP053286.1\|WP_171402846.1\|457087_459226_+\|polyribonucleotide-nucleotidyltransferase	gnl\|CDD\|236995	PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase; Provisional.	0
NZ_CP053286.1\|WP_044029869.1\|466180_467335_+\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	1.24788e-20
NZ_CP053286.1\|WP_015376422.1\|469874_470870_-\|U32-family-peptidase	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	4.80562e-116
NZ_CP053286.1\|WP_171402854.1\|479280_480246_+\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	8.73708e-141
NZ_CP053286.1\|WP_004933486.1\|463705_463945_+\|sulfurtransferase-like-selenium-metabolism-protein-YedF	gnl\|CDD\|236822	PRK11018, PRK11018, putative sulfurtransferase YedF.	1.54908e-49
NZ_CP053286.1\|WP_171402849.1\|468984_469863_-\|U32-family-peptidase	gnl\|CDD\|237968	PRK15447, PRK15447, putative protease; Provisional.	0
NZ_CP053286.1\|WP_004933488.1\|462494_463709_+\|selenium-metabolism-membrane-protein-YedE/FdhT	gnl\|CDD\|236845	PRK11099, PRK11099, putative inner membrane protein; Provisional.	0
NZ_CP053286.1\|WP_004933495.1\|459354_460239_+\|lipoprotein-NlpI	gnl\|CDD\|236875	PRK11189, PRK11189, lipoprotein NlpI; Provisional.	0
NZ_CP053286.1\|WP_171402852.1\|474297_477573_+\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0
NZ_CP053286.1\|WP_171402850.1\|471643_472147_+\|N-acetyltransferase	gnl\|CDD\|225695	COG3153, COG3153, Predicted acetyltransferase [General function prediction only].	4.63087e-57
NZ_CP053286.1\|WP_171402853.1\|477946_479284_+\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|187866	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins; Predicted subunit of the Cascade complex; signature gene for I-F subtype; also known as Csy1 family.	0
NZ_CP053286.1\|WP_004933479.1\|465227_466199_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|235136	PRK03598, PRK03598, putative efflux pump membrane fusion protein; Provisional.	5.61559e-40
NZ_CP053286.1\|WP_171402847.1\|460425_462348_+\|DEAD/DEAH-family-ATP-dependent-RNA-helicase	gnl\|CDD\|236941	PRK11634, PRK11634, ATP-dependent RNA helicase DeaD; Provisional.	0
NZ_CP053286.1\|WP_033633542.1\|463982_464996_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|182505	PRK10508, PRK10508, luciferase-like monooxygenase.	0
NZ_CP053286.1\|WP_171402848.1\|467331_468474_+\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	1.18808e-23
NZ_CP053286.1\|WP_171402851.1\|473320_474301_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	0
NZ_CP053286.1\|WP_171402855.1\|480258_481251_+\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0

>NZ_CP053286.1|WP_171402848.1|467331_468474_+|ABC-transporter-permease
MKLYWQTFVKVLLGMLERPVWLMLILSLCIMSLVYANRTVWDLPVGVVDQDHSTASRQLIRQLDATSKIAIETYDSLEQAQRDLSWRKLFAVIIMPVDLEKKILSGQNIVVPVYGDATNRLANGQIQQDVVAAYQQLLTQYNNGLLLRSGFSERQAQILLTPILGQTLDVFNPGISFAAIIFPGLLVMLLQHSLLIACIRVNIAMKSMPGGKAPLAAHLGGLTALLPIWLFLSIVLFVLWPWVLGYRQTANIAELLLLTFPFLLAVLGLGKLVTECLRSVEMIYLTLAFITTPIFYLSGTIWPLQSMPAWVRAISYSIPSTWGTKAIAGVNQMGLSLNEVWGDVMMMLILGVVYTLLGFGVGFLRNSVALRGMFRKRRAS
>NZ_CP053286.1|WP_044029869.1|466180_467335_+|ABC-transporter-permease
MAMERVRAGWRCFSHAFDKECRVAFRSPVVHWLSWIFPLILFALISSNFSEGTLLDLPVSVVDSDHSPLSKSLTRRLDAGSHAHVEAYGGGLPESLSRLRSAQDYALLYIPPDFEANALSGKQPSVVMYYNALFYGAGLYSTQDFGGLMNEINASTRSIIATEMGKTLPPLADVTLSYGSLFNASGSYIYYQQFAATIHLLQLFAVTCMIYVLARSKSLLQAKPFSLALLGKLAPYTLCFTTLLMVEIAALVGIFDARVSGNPLFMLMIGLFYVMAAQSIGLLLYTFTGSTITAYSLIGILVSIAMTFSGMAVPELSMPLPARIISNIEPLTHALYAMFDVFLRQVHASAIFSVCALLAVYPLVAALLVRNRLPARLAKEGNAG
>NZ_CP053286.1|WP_004933479.1|465227_466199_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MKKKTLFTLLLMMVAIALAILFRAHNQDLLLQGEVDAPEVIVASKAKGRVVERLIERGDDVKSGQLIIQLDSPELMAQLRSAQATRDEAKAQLELSLHGTREESIRNLRANLAQAEAQYRNAQNDYNRNLSVAGKGYISKSELDASRRSRDTAFQQVQAAKANLDEGINGDRVEQRQQYAAALRAAEENLLQIQAQSDDLQVKAPVDGEVGPIPAEVGELLNAGSPLVTLIRVPDAYFVFNLREDILAHVRKGDKVKLRVPALKDKMIDTEVRYIAPLGDYATKRATRATGDFDLKTFEVRLYPSQPVDGLRPGMSTLWQWKE
>NZ_CP053286.1|WP_033633542.1|463982_464996_-|LLM-class-flavin-dependent-oxidoreductase
MTEHTAVPLSVLDLSPIPQGAKARDAFHCSLDLAQHAERWGYQRYWLAEHHNMTGIGSAATSVLLGYLAAGTQSIRLGSGGVMLPNHAPLVIAEQFGTLESLYPGRIDLGLGRAPGTDQRTMMALRRHLSGDVDTFPRDVQELQNYFCDAQPGQPVQAVPGQGLHVPLWLLGSSLYSAQLAAQLGLPFAFASHFAPDMLFQALQLYRENFKPSKQLAQPHAMVCVNVIAADSDRDARFLFSSMQQQFINLRRGSPGPLPPPVDNIHALWTAGEQYGVEQALRMSIVGDEKTVRHGLQTLLRETDADEIMVNGQIFDHQARLRSFEIVAGVKGDIVKG
>NZ_CP053286.1|WP_004933486.1|463705_463945_+|sulfurtransferase-like-selenium-metabolism-protein-YedF
MKETTIVPDYRLDMLGEPCPYPAVATLEAMPQLKPGEILEVISDCPQSINNIPLDARNHGYKVLDIQQDGPTIRYLIQR
>NZ_CP053286.1|WP_004933488.1|462494_463709_+|selenium-metabolism-membrane-protein-YedE/FdhT
MSWQQFKSQYLVRFWAPLPAVIAAGILSTYYFGMTGTFWAVTGEFTRWGGHVLQWFGLHPEQWGYFKVIGLQGTPLERIDGRMIIGMFAGCIAAALWANNIKLRQPQHRIRIVQALLGGIIAGFGARLAMGCNLAAFFTGIPQFSLHAWFFALATAAGSYFGAKFTLLPMFRIPVKLQKVKAAAPLTQKPEQARRRFRLGMAIFGLAVAWSLWTLFDAPKLGIAMLFGIGFGLLIERAQICFTSAFRDLWITGRTHMAKAIIIGMAVSAIGIFSYVQLGVAPKIMWAGPNAVLGGLLFGFGIVLAGGCETGWMYRAVEGQVHYWWVGLGNIIGATLLAYYWDDLAPALATDYDKINLLDTFGPIGGLLVTYLLLALAFAAMLWWEKRFFRARPEAQVVNLRSMP
>NZ_CP053286.1|WP_171402847.1|460425_462348_+|DEAD/DEAH-family-ATP-dependent-RNA-helicase
MTTEFETSFADLGLSAPIISALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLQADLKAPQILVLAPTRELAVQVAEAMTDFSKHMNGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLNLSNLSGLVLDEADEMLRMGFIEDVETIMAEIPAEHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWSVYGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYSSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGERRLAKFAAKVQQQLESSDLDLYRALLTKLQPEEELDMETLAAALLKMAQGERPLILPPDPVFKPRQRREFNDRDDRRGERGDRRDSRDGDRPRRERRDVGEMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEILNHFTRTRILNKPMNMQLLGDAQPFERRERRDGGNGGERRGNGRPFNGERREGGPRRSFGERREGGNGGERRGGNYNRDGKPAPRRDDGAPAAPRRRFGDA
>NZ_CP053286.1|WP_099032700.1|460355_460436_+|protein-YrbN
MKMTENFLDELCRLAAIINEARVHDD
>NZ_CP053286.1|WP_004933495.1|459354_460239_+|lipoprotein-NlpI
MKPFLRWCYVATALMLAGCSNHDWRKDEVLAIPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYARLNRGIALYYGGRFPLAQDDLQAFYQDDPNDPFRSLWLYLVEREIDPKKAEVALQQRYDKADRGQWGWNIVEFYLGKISEKTLMERLKADATDNTSLAEHLSETDFYLGKHYLSLGDKDTASALFKLTVSNNVHNFVEHRYALLELALLGQEQDDLSESDQQ
>NZ_CP053286.1|WP_171402846.1|457087_459226_+|polyribonucleotide-nucleotidyltransferase
MLTPIIRKFQYGQHTVTIETGMMARQATAAVMVSMDDTAVFVTVVGQKKAKPGQSFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLTSRLIDRPIRPLFPDSFLNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQYVLNPTTDELKESRLDLVVAGTAGAVLMVESEADVLSEDQMLGAVVFGHDQQQVVIENINALVAEAGKPKWDWQAPAVNEALHARVAELAEARLGDAYHITEKQERYAQVDAIKDSVVETLLAQDETLDAGEIQDILGNLEKNVVRSRVLRGEPRIDGREKDMIRGLDVRTGVLPRTHGSALFTRGETQALVTATLGTARDAQNLDELMGEKTDSFLFHYNFPPYSVGETGMVGSPKRREIGHGRLAKRGVLAMMPKPEDFPYTVRVVSEITESNGSSSMASVCGASLALMDAGVPIKAAVAGIAMGLVKEADNYVVLSDILGDEDHLGDMDFKVAGSRDGITALQMDIKIEGITREIMQVALNQAKGARLHILGVMEQAISTPRGDISEFAPRIHTIRINPDKIKDVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKFAIRRIEEITAEIEVGRIYQGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQGRVRLSIKEAMAPEAGSPAPEAGSPAPEAE
>NZ_CP053286.1|WP_171402849.1|468984_469863_-|U32-family-peptidase
MKYALGPVLYYWPKNDIATFYQQAADSSADIIYLGESVCAKRREMKVGDWLALAREIAHNGKQVVLSTLALLQAPSELNELKRYVENGEFLFEANDLGAVNMAAERGLPFVAGHALNCYNAYTLRLLRRQGMIRWCMPVELSRDWLANLLTQCDELGFRHDFEVEVLSYGHLPLAYSARCFTARSENRGKDECETCCIKYPQGRMMRSQEQQQVFVLNGIQTMSGYCYNLGNELPNMQGLVDIVRLSPQGAETLAQIDAFRANERGEQPLALTDHADCNGYWRRVAGLELVG
>NZ_CP053286.1|WP_015376422.1|469874_470870_-|U32-family-peptidase
MELLCPAGNLPALKAAVDNGADAVYIGLKDDTNARHFAGLNFTEKKLQEAVDYVHRHGRKLHIAINTFAHPDGYARWQRAVDMAAQLGADALILADLAMLEYAAQRYPQLERHVSVQASATNEEAIRFYQRNFEVGRVVLPRVLSMHQVKQLARTSPVPLEVFAFGSLCIMAEGRCYLSSYLTGESPNTVGACSPARFVRWQQTPQGMESRLNDVLIDRYQDHENAGYPTLCKGRYLVDDVRYHALEEPTSLNTLELLPELLAANIASVKIEGRQRSPAYVSQVARVWRQAIDRCQADPAAYRADAAWMETLGAMSEGTQTTLGAYHRKWQ
>NZ_CP053286.1|WP_021504239.1|471122_471650_+|SCP2-domain-containing-protein
MTVLEQLRARLVRQGPSLLRIPLKFTPFALQRQLLQQVLSWQFRQALADGDLEFLESRWLKIEVRDLALHWFMTVENDKLVVSQHAEADVSFSGDANDLILIAARKQDPDTLFFQRRLQIEGDTELGLYVKNLMDAIELESMPAPLRMGLLQLADFVEAGLQEGTASASRVAVSC
>NZ_CP053286.1|WP_171402850.1|471643_472147_+|N-acetyltransferase
MLIRVEIPVDAAGIDALLRRAFGRDDEADLVQQLREDGLLTLGVVATDDEGGVVGYAAFSPVDVAGEDRQWVALAPLAVDESLRRQGLAEKLVYEGLDSLNEFSYAAVVVVGDPAYYGRFGFKPAAAYGLHCRWPDTESAFQVYPLAEDALNGVSGEVAFSAPFNRF
>NZ_CP053286.1|WP_171402851.1|473320_474301_+|type-I-F-CRISPR-associated-endonuclease-Cas1
MKNTLSPSELKTILHSKRANLYYLQYCRVLVNGGRVEYVTDEGKQSLYWNIPIANTTAIMLGTGTSVTQAAMREFARAGVLVGFCGGGGTPLFAANEVEVAVSWLTPQSEYRPTEYLQNWVSFWFDEAKRLEAARVFQQVRIEQIKRHWLGARMQREDGFVLNEERLLALVERYQSKLSESATHNELMLQEAVMTKALYKLAAEAVSYGDFIRAKRGGGSDLANRFLDHGNYLAYGLAATATWVTGLPHGLAVLHGKTRRGGLVFDVADLIKDALILPQAFIAAMAGEEEQDFRQRCLNGFQRADALDLMIDTLQETALRLGAGTS
>NZ_CP053286.1|WP_171402852.1|474297_477573_+|type-I-F-CRISPR-associated-helicase-Cas3
MNILLISQCNKFALTQTRKILDQFAERKGDRTWQTAITLQGLDTLRRALRKTARRNTAVACHWIRGANQTDLLWVVGNPRRFNVQGTVPTNSTARDVLKSQDENHWHSAEAMALMAGIAGLFHDFGKANALFQAGLIQAGAKRFQPYRHEWISLRLFQAFVGQRQDKQWLAALAEITAEDEPALLQRLYRDRQGMSESPFKTLPPLAQVIGWLIVAHHRLPAYPRQDDAERYRDTPDFACSGSWLENQLNACWNSTNQDHSDWEPKDFAQVWQFPQGTPLRSALWCAKAQKLAKRAQQLGSLVQFGNLGQQFAVHLARLALMLADHVYSAGPAVTDWQAPGYAAWANTDRQTGQRKQQLDEHNIGVGQGALLLGRLLPHVRKTLPAITRHKGFKRRSAHERYRWQDKAYDVAAALRQRSVKQGFFGVNMASTGCGKTFANARIMYALADEQEGCRFSIALGLRTLTLQTGDALRDRLHLQDDDLAVMIGSTAVQQLHKTPVSDVGSVSAEALFAEHQYVRYDGSLDDGRLSRWLAQDSRLHKLISAPVLVSTIDYLIPATEGVRGGRQIAPMLRLLTADLVLDEPDDFDIADLPALCRLVNWAGMLGTRVLLSSATLPPALVQALFNAYCTGRREYQRSCSEPGTPLNVCCAWFDEHGAVSAEIDKASMFLDEHTRFVTQRIGKLEQLMPLRQAELLPVVVAGRQKEEVLEAVGACLHSAIIQLHQHHCQQHTSGKTVSIGLIRMANIDPLVAVAQCLMQLAPPAGYRIHYCIYHSQHPLAMRSHIERRLDATLTRHQPEALWEVEEIKRAVACDDESNHLFVVLASPVAEVGRDWDLDWAIAEPSSMRSLIQLAGRIQRHRQQPPVTPNLLILNKNIKALRERNNEGLAYCRPGFESRHFRLASHDLQALLLPQQYQFPSAIPRIRERQGASKGPLFENLVDLEHRRLWETLLGTQKTTESAALWWRYPLSWNAEMQRRYPFRQSAKETQYYLSLEEDEESMVFVNRDTGPSGSKQSGDFDYPGLALADGNSLWMDNDYPQLYRRLADTLGMEFAQISERFGEINLRELDEDDTDTWRFHPALGVFRALK
>NZ_CP053286.1|WP_171402853.1|477946_479284_+|type-I-F-CRISPR-associated-protein-Csy1
MPQQGLASFIVTYIEGRREPKLEAFDKDAQKKLAAATEAEQGVLQQQLAQERRELEQRYEVRAWLTDAAVRAGQISLVTHAAKYTHSDAKGSSVYGEGEGDERYLSTAALPKPAVDAVGNAAALDVAKLLQTEHQGDSLLACLQRQDHSALAELAENAEQLEQWVLGFSQALINKQPSSHKLAKQIYFPVEDGYHLLSPLFSSSLAQALHDRLLHVRFSDETKEVNQARRAGQWHPLQLTYFPQTAVMNMGGTKPQNISYLNSARGGRVWLLPCTPPEWQSLDKPPYGCKSIFDRRGPFSYLVRGVVVQLRHFLLEVQERDNTVALRRRRQAAIDQIIGMLFNVAADIQREEWRGWSHNERCELKPAQQLWLDPYRAKDDELFCAEREKEEWQAEIADDFAVWLNRQLSIEPMNMGMVERREWRTAPLFRQRLRELEDALAEDLK
>NZ_CP053286.1|WP_171402854.1|479280_480246_+|type-I-F-CRISPR-associated-protein-Csy2
MSHVIVLRHLQVENANAVAGLTYGFPAISHFLGYVHALSRKLQASHGLILGGCGVICHRRQVHAHSSGRDYQFALTRNPLTKEAKTAAFNEEGRMHMTVSLVIECTGEIANGDIGLDQLQEHLYRLCQTQKLAGGSITRLRGVSVRGYPQQPDDVRRLVCRLLPGFALLDRSELLQQHFTALKQYRPQAEMLDAWLDFAALKMQAVPTHQDKTPEVGDKADWEYVGKPQPGYLVPLMTGYQRISPLYPAGEVLNARDASTPFCFAEAVYGVGEWCGLHRIHDLSALFWRYQTTDNGYYCRTPSAVIPQDDESADSIYLDDF
>NZ_CP053286.1|WP_171402855.1|480258_481251_+|type-I-F-CRISPR-associated-protein-Csy3
MAKSTIKTASVLAFERKLANSDAIMLAGEWGTDSWQPIGIKEKAVRGTISNRLKNAITSDPAKLDAEIQKPNLQTVDVAALPQNADTLKVAFTLRVLGNLAMPSVCNDQDYQNALQAVIEGYIAEHGFGALAARYAENLANGRFLWRNRVGAEKIVVRVTGSKTWEFNAHDYSLREFSQPKGALGELAAEIERGLAGESFALFNVEAFVRLGNGQEIFPSQELVLDSNSKKSKLLYQVEGVAAMHSQKVGNALRTIDTWHSQADSLGAIAVEPYGSVTSRGIACRQPKEKMDFYTLLDRWVIKEEKPSVEQQHYVMAVLIRGGVFGEKGE
>NZ_CP053286.1|WP_171402856.1|481260_481815_+|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDHYQDVRVLPDPEFSEPTLLSALFAKLHRALAAYGKGDIGISFPQMQRTPGAILRLHGSHDALTALGGFDWIKGLRDYANVSPIQTVPAETAFRTVSRVQVKSSVERIRRRAVNKGWLTEEQARERIPMANEQRTSLPFITLKSLSTGQHFRLFLKQGQLQEKPTPGVFSFYGLSASATVPWF

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Crispr_ID: NZ_CP053286_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053286_2

472492-473120

TypeI-F

I-F

Consensus_repeat	Method
GTGCACTGCCGTACAGGCAGCTTAGAAA	PILER-CR
GTGCACTGCCGTACAGGCAGCTTAGAAA	CRISPRCasFinder
GTGCACTGCCGTACAGGCAGCTTAGAAA	CRT

10 spacers

cas1,cas3f,cas8f,cas5f,cas7f,cas6f

The CRISPR arrays of NZ_CP053286_2

>merge|NZ_CP053286|2|472492-473120|PILER-CR,CRISPRCasFinder,CRT
GTGCACTGCCGTACAGGCAGCTTAGAAATGGAACAAGACCGAGGCCGACGGGCGTTATGTGTGCACTGCCGTACAGGCAGCTTAGAAAAGGGGCTGATTACAACGCTGAAAAAGCGTAAGGTGCACTGCCGTACAGGCAGCTTAGAAATTCCTCTGGCACGGTTCGAGCGACGGTATATCGTGCACTGCCGTACAGGCAGCTTAGAAATTGCGTTCCCTTTCCGCCTGGCGATTACGTGCGTGCACTGCCGTACAGGCAGCTTAGAAAATCCCCAGCGGCGAGTTCAATATCTCGCAAAAGTGCACTGCCGTACAGGCAGCTTAGAAAAGAAACTCACCTTGCTTGCGGTATTTGCGCTGGTGCACTGCCGTACAGGCAGCTTAGAAACAGCCGTCGTAATGCGGCAACAGCTGCTTTTTGTGCACTGCCGTACAGGCAGCTTAGAAATGGCAAAAAAAATCCTGCCTCAATTCCCCGATGTGCACTGCCGCACAGGCAGCTTAGAAACCAGTCGTGCCAGCAGTTGTAGCCGTTGTTCCAGTGCACTGCCGTACAGGCAGCTTAGAAATTGTCCTCGAACGGTATCAGCCCGGATACGCGGTGCACTGCCGTACAGGCAGAATATAGA

>NZ_CP053286|2|2|472492-473060|PILER-CR
GTGCACTGCCGTACAGGCAGCTTAGAAA	TGGAACAAGACCGAGGCCGACGGGCGTTATGT
GTGCACTGCCGTACAGGCAGCTTAGAAA	AGGGGCTGATTACAACGCTGAAAAAGCGTAAG
GTGCACTGCCGTACAGGCAGCTTAGAAA	TTCCTCTGGCACGGTTCGAGCGACGGTATATC
GTGCACTGCCGTACAGGCAGCTTAGAAA	TTGCGTTCCCTTTCCGCCTGGCGATTACGTGC
GTGCACTGCCGTACAGGCAGCTTAGAAA	ATCCCCAGCGGCGAGTTCAATATCTCGCAAAA
GTGCACTGCCGTACAGGCAGCTTAGAAA	AGAAACTCACCTTGCTTGCGGTATTTGCGCTG
GTGCACTGCCGTACAGGCAGCTTAGAAA	CAGCCGTCGTAATGCGGCAACAGCTGCTTTTT
GTGCACTGCCGTACAGGCAGCTTAGAAA	TGGCAAAAAAAATCCTGCCTCAATTCCCCGAT
GTGCACTGCCGCACAGGCAGCTTAGAAA	CCAGTCGTGCCAGCAGTTGTAGCCGTTGTTCCA
GTGCACTGCCGTACAGGCAGCTTAGAAA

>NZ_CP053286|2|2|472492-473120|CRISPRCasFinder
GTGCACTGCCGTACAGGCAGCTTAGAAA	TGGAACAAGACCGAGGCCGACGGGCGTTATGT
GTGCACTGCCGTACAGGCAGCTTAGAAA	AGGGGCTGATTACAACGCTGAAAAAGCGTAAG
GTGCACTGCCGTACAGGCAGCTTAGAAA	TTCCTCTGGCACGGTTCGAGCGACGGTATATC
GTGCACTGCCGTACAGGCAGCTTAGAAA	TTGCGTTCCCTTTCCGCCTGGCGATTACGTGC
GTGCACTGCCGTACAGGCAGCTTAGAAA	ATCCCCAGCGGCGAGTTCAATATCTCGCAAAA
GTGCACTGCCGTACAGGCAGCTTAGAAA	AGAAACTCACCTTGCTTGCGGTATTTGCGCTG
GTGCACTGCCGTACAGGCAGCTTAGAAA	CAGCCGTCGTAATGCGGCAACAGCTGCTTTTT
GTGCACTGCCGTACAGGCAGCTTAGAAA	TGGCAAAAAAAATCCTGCCTCAATTCCCCGAT
GTGCACTGCCGCACAGGCAGCTTAGAAA	CCAGTCGTGCCAGCAGTTGTAGCCGTTGTTCCA
GTGCACTGCCGTACAGGCAGCTTAGAAA	TTGTCCTCGAACGGTATCAGCCCGGATACGCG
GTGCACTGCCGTACAGGCAGAATATAGA

>NZ_CP053286|2|2|472492-473120|CRT
GTGCACTGCCGTACAGGCAGCTTAGAAA	TGGAACAAGACCGAGGCCGACGGGCGTTATGT
GTGCACTGCCGTACAGGCAGCTTAGAAA	AGGGGCTGATTACAACGCTGAAAAAGCGTAAG
GTGCACTGCCGTACAGGCAGCTTAGAAA	TTCCTCTGGCACGGTTCGAGCGACGGTATATC
GTGCACTGCCGTACAGGCAGCTTAGAAA	TTGCGTTCCCTTTCCGCCTGGCGATTACGTGC
GTGCACTGCCGTACAGGCAGCTTAGAAA	ATCCCCAGCGGCGAGTTCAATATCTCGCAAAA
GTGCACTGCCGTACAGGCAGCTTAGAAA	AGAAACTCACCTTGCTTGCGGTATTTGCGCTG
GTGCACTGCCGTACAGGCAGCTTAGAAA	CAGCCGTCGTAATGCGGCAACAGCTGCTTTTT
GTGCACTGCCGTACAGGCAGCTTAGAAA	TGGCAAAAAAAATCCTGCCTCAATTCCCCGAT
GTGCACTGCCGCACAGGCAGCTTAGAAA	CCAGTCGTGCCAGCAGTTGTAGCCGTTGTTCCA
GTGCACTGCCGTACAGGCAGCTTAGAAA	TTGTCCTCGAACGGTATCAGCCCGGATACGCG
GTGCACTGCCGTACAGGCAGAATATAGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053286.1\|WP_171402859.1\|485326_486109_-\|phosphonate-metabolism-protein-PhnP	unknown	unknown	gnl\|CDD\|183052
NZ_CP053286.1\|WP_021504239.1\|471122_471650_+\|SCP2-domain-containing-protein	unknown	unknown	gnl\|CDD\|225696
NZ_CP053286.1\|WP_171402857.1\|484272_484707_+\|YhbP-family-protein	unknown	unknown	gnl\|CDD\|235127
NZ_CP053286.1\|WP_171402856.1\|481260_481815_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|378224
NZ_CP053286.1\|WP_044029869.1\|466180_467335_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
NZ_CP053286.1\|WP_171402858.1\|484737_485370_+\|NAD(P)H-binding-protein	unknown	unknown	gnl\|CDD\|187560
NZ_CP053286.1\|WP_015376422.1\|469874_470870_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|223896
NZ_CP053286.1\|WP_171402854.1\|479280_480246_+\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	cd09676_cas5f_CAS-I-F	gnl\|CDD\|378221
NZ_CP053286.1\|WP_171402851.1\|473320_474301_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NZ_CP053286.1\|WP_171404661.1\|483749_484010_-\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|178979
NZ_CP053286.1\|WP_171402849.1\|468984_469863_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|237968
NZ_CP053286.1\|WP_004933488.1\|462494_463709_+\|selenium-metabolism-membrane-protein-YedE/FdhT	unknown	unknown	gnl\|CDD\|236845
NZ_CP053286.1\|WP_171402852.1\|474297_477573_+\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|274201
NZ_CP053286.1\|WP_171402850.1\|471643_472147_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|225695
NZ_CP053286.1\|WP_171402853.1\|477946_479284_+\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	pfam09611_cas8f_CAS-I-F	gnl\|CDD\|187866
NZ_CP053286.1\|WP_004933479.1\|465227_466199_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|235136
NZ_CP053286.1\|WP_171402848.1\|467331_468474_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|378925
NZ_CP053286.1\|WP_033633542.1\|463982_464996_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182505
NZ_CP053286.1\|WP_004933486.1\|463705_463945_+\|sulfurtransferase-like-selenium-metabolism-protein-YedF	unknown	unknown	gnl\|CDD\|236822
NZ_CP053286.1\|WP_171402855.1\|480258_481251_+\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222

Protein	Function_ID	Function_description	E-value
NZ_CP053286.1\|WP_171402859.1\|485326_486109_-\|phosphonate-metabolism-protein-PhnP	gnl\|CDD\|183052	PRK11244, phnP, carbon-phosphorus lyase complex accessory protein; Provisional.	8.66299e-152
NZ_CP053286.1\|WP_021504239.1\|471122_471650_+\|SCP2-domain-containing-protein	gnl\|CDD\|225696	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism].	1.71415e-71
NZ_CP053286.1\|WP_171402857.1\|484272_484707_+\|YhbP-family-protein	gnl\|CDD\|235127	PRK03467, PRK03467, hypothetical protein; Provisional.	4.32435e-88
NZ_CP053286.1\|WP_171402856.1\|481260_481815_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|378224	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	2.68346e-91
NZ_CP053286.1\|WP_044029869.1\|466180_467335_+\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	1.24788e-20
NZ_CP053286.1\|WP_171402858.1\|484737_485370_+\|NAD(P)H-binding-protein	gnl\|CDD\|187560	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs. Atypical SDRs in this subgroup include CC3 (also known as TIP30) which is implicated in tumor suppression. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine rich NAD(P)-binding motif that resembles the extended SDRs, and have an active site triad of the SDRs (YXXXK and upstream Ser), although the upstream Asn of the usual SDR active site is substituted with Asp. For CC3, the Tyr of the triad is displaced compared to the usual SDRs and the protein is monomeric, both these observations suggest that the usual SDR catalytic activity is not present. NADP appears to serve an important role as a ligand, and may be important in the interaction with other macromolecules. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	2.72144e-67
NZ_CP053286.1\|WP_015376422.1\|469874_470870_-\|U32-family-peptidase	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	4.80562e-116
NZ_CP053286.1\|WP_171402854.1\|479280_480246_+\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	8.73708e-141
NZ_CP053286.1\|WP_171402851.1\|473320_474301_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	0
NZ_CP053286.1\|WP_171404661.1\|483749_484010_-\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|178979	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated.	1.29767e-32
NZ_CP053286.1\|WP_171402849.1\|468984_469863_-\|U32-family-peptidase	gnl\|CDD\|237968	PRK15447, PRK15447, putative protease; Provisional.	0
NZ_CP053286.1\|WP_004933488.1\|462494_463709_+\|selenium-metabolism-membrane-protein-YedE/FdhT	gnl\|CDD\|236845	PRK11099, PRK11099, putative inner membrane protein; Provisional.	0
NZ_CP053286.1\|WP_171402852.1\|474297_477573_+\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0
NZ_CP053286.1\|WP_171402850.1\|471643_472147_+\|N-acetyltransferase	gnl\|CDD\|225695	COG3153, COG3153, Predicted acetyltransferase [General function prediction only].	4.63087e-57
NZ_CP053286.1\|WP_171402853.1\|477946_479284_+\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|187866	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins; Predicted subunit of the Cascade complex; signature gene for I-F subtype; also known as Csy1 family.	0
NZ_CP053286.1\|WP_004933479.1\|465227_466199_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|235136	PRK03598, PRK03598, putative efflux pump membrane fusion protein; Provisional.	5.61559e-40
NZ_CP053286.1\|WP_171402848.1\|467331_468474_+\|ABC-transporter-permease	gnl\|CDD\|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	1.18808e-23
NZ_CP053286.1\|WP_033633542.1\|463982_464996_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|182505	PRK10508, PRK10508, luciferase-like monooxygenase.	0
NZ_CP053286.1\|WP_004933486.1\|463705_463945_+\|sulfurtransferase-like-selenium-metabolism-protein-YedF	gnl\|CDD\|236822	PRK11018, PRK11018, putative sulfurtransferase YedF.	1.54908e-49
NZ_CP053286.1\|WP_171402855.1\|480258_481251_+\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0

>NZ_CP053286.1|WP_171402850.1|471643_472147_+|N-acetyltransferase
MLIRVEIPVDAAGIDALLRRAFGRDDEADLVQQLREDGLLTLGVVATDDEGGVVGYAAFSPVDVAGEDRQWVALAPLAVDESLRRQGLAEKLVYEGLDSLNEFSYAAVVVVGDPAYYGRFGFKPAAAYGLHCRWPDTESAFQVYPLAEDALNGVSGEVAFSAPFNRF
>NZ_CP053286.1|WP_021504239.1|471122_471650_+|SCP2-domain-containing-protein
MTVLEQLRARLVRQGPSLLRIPLKFTPFALQRQLLQQVLSWQFRQALADGDLEFLESRWLKIEVRDLALHWFMTVENDKLVVSQHAEADVSFSGDANDLILIAARKQDPDTLFFQRRLQIEGDTELGLYVKNLMDAIELESMPAPLRMGLLQLADFVEAGLQEGTASASRVAVSC
>NZ_CP053286.1|WP_015376422.1|469874_470870_-|U32-family-peptidase
MELLCPAGNLPALKAAVDNGADAVYIGLKDDTNARHFAGLNFTEKKLQEAVDYVHRHGRKLHIAINTFAHPDGYARWQRAVDMAAQLGADALILADLAMLEYAAQRYPQLERHVSVQASATNEEAIRFYQRNFEVGRVVLPRVLSMHQVKQLARTSPVPLEVFAFGSLCIMAEGRCYLSSYLTGESPNTVGACSPARFVRWQQTPQGMESRLNDVLIDRYQDHENAGYPTLCKGRYLVDDVRYHALEEPTSLNTLELLPELLAANIASVKIEGRQRSPAYVSQVARVWRQAIDRCQADPAAYRADAAWMETLGAMSEGTQTTLGAYHRKWQ
>NZ_CP053286.1|WP_171402849.1|468984_469863_-|U32-family-peptidase
MKYALGPVLYYWPKNDIATFYQQAADSSADIIYLGESVCAKRREMKVGDWLALAREIAHNGKQVVLSTLALLQAPSELNELKRYVENGEFLFEANDLGAVNMAAERGLPFVAGHALNCYNAYTLRLLRRQGMIRWCMPVELSRDWLANLLTQCDELGFRHDFEVEVLSYGHLPLAYSARCFTARSENRGKDECETCCIKYPQGRMMRSQEQQQVFVLNGIQTMSGYCYNLGNELPNMQGLVDIVRLSPQGAETLAQIDAFRANERGEQPLALTDHADCNGYWRRVAGLELVG
>NZ_CP053286.1|WP_171402848.1|467331_468474_+|ABC-transporter-permease
MKLYWQTFVKVLLGMLERPVWLMLILSLCIMSLVYANRTVWDLPVGVVDQDHSTASRQLIRQLDATSKIAIETYDSLEQAQRDLSWRKLFAVIIMPVDLEKKILSGQNIVVPVYGDATNRLANGQIQQDVVAAYQQLLTQYNNGLLLRSGFSERQAQILLTPILGQTLDVFNPGISFAAIIFPGLLVMLLQHSLLIACIRVNIAMKSMPGGKAPLAAHLGGLTALLPIWLFLSIVLFVLWPWVLGYRQTANIAELLLLTFPFLLAVLGLGKLVTECLRSVEMIYLTLAFITTPIFYLSGTIWPLQSMPAWVRAISYSIPSTWGTKAIAGVNQMGLSLNEVWGDVMMMLILGVVYTLLGFGVGFLRNSVALRGMFRKRRAS
>NZ_CP053286.1|WP_044029869.1|466180_467335_+|ABC-transporter-permease
MAMERVRAGWRCFSHAFDKECRVAFRSPVVHWLSWIFPLILFALISSNFSEGTLLDLPVSVVDSDHSPLSKSLTRRLDAGSHAHVEAYGGGLPESLSRLRSAQDYALLYIPPDFEANALSGKQPSVVMYYNALFYGAGLYSTQDFGGLMNEINASTRSIIATEMGKTLPPLADVTLSYGSLFNASGSYIYYQQFAATIHLLQLFAVTCMIYVLARSKSLLQAKPFSLALLGKLAPYTLCFTTLLMVEIAALVGIFDARVSGNPLFMLMIGLFYVMAAQSIGLLLYTFTGSTITAYSLIGILVSIAMTFSGMAVPELSMPLPARIISNIEPLTHALYAMFDVFLRQVHASAIFSVCALLAVYPLVAALLVRNRLPARLAKEGNAG
>NZ_CP053286.1|WP_004933479.1|465227_466199_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MKKKTLFTLLLMMVAIALAILFRAHNQDLLLQGEVDAPEVIVASKAKGRVVERLIERGDDVKSGQLIIQLDSPELMAQLRSAQATRDEAKAQLELSLHGTREESIRNLRANLAQAEAQYRNAQNDYNRNLSVAGKGYISKSELDASRRSRDTAFQQVQAAKANLDEGINGDRVEQRQQYAAALRAAEENLLQIQAQSDDLQVKAPVDGEVGPIPAEVGELLNAGSPLVTLIRVPDAYFVFNLREDILAHVRKGDKVKLRVPALKDKMIDTEVRYIAPLGDYATKRATRATGDFDLKTFEVRLYPSQPVDGLRPGMSTLWQWKE
>NZ_CP053286.1|WP_033633542.1|463982_464996_-|LLM-class-flavin-dependent-oxidoreductase
MTEHTAVPLSVLDLSPIPQGAKARDAFHCSLDLAQHAERWGYQRYWLAEHHNMTGIGSAATSVLLGYLAAGTQSIRLGSGGVMLPNHAPLVIAEQFGTLESLYPGRIDLGLGRAPGTDQRTMMALRRHLSGDVDTFPRDVQELQNYFCDAQPGQPVQAVPGQGLHVPLWLLGSSLYSAQLAAQLGLPFAFASHFAPDMLFQALQLYRENFKPSKQLAQPHAMVCVNVIAADSDRDARFLFSSMQQQFINLRRGSPGPLPPPVDNIHALWTAGEQYGVEQALRMSIVGDEKTVRHGLQTLLRETDADEIMVNGQIFDHQARLRSFEIVAGVKGDIVKG
>NZ_CP053286.1|WP_004933486.1|463705_463945_+|sulfurtransferase-like-selenium-metabolism-protein-YedF
MKETTIVPDYRLDMLGEPCPYPAVATLEAMPQLKPGEILEVISDCPQSINNIPLDARNHGYKVLDIQQDGPTIRYLIQR
>NZ_CP053286.1|WP_004933488.1|462494_463709_+|selenium-metabolism-membrane-protein-YedE/FdhT
MSWQQFKSQYLVRFWAPLPAVIAAGILSTYYFGMTGTFWAVTGEFTRWGGHVLQWFGLHPEQWGYFKVIGLQGTPLERIDGRMIIGMFAGCIAAALWANNIKLRQPQHRIRIVQALLGGIIAGFGARLAMGCNLAAFFTGIPQFSLHAWFFALATAAGSYFGAKFTLLPMFRIPVKLQKVKAAAPLTQKPEQARRRFRLGMAIFGLAVAWSLWTLFDAPKLGIAMLFGIGFGLLIERAQICFTSAFRDLWITGRTHMAKAIIIGMAVSAIGIFSYVQLGVAPKIMWAGPNAVLGGLLFGFGIVLAGGCETGWMYRAVEGQVHYWWVGLGNIIGATLLAYYWDDLAPALATDYDKINLLDTFGPIGGLLVTYLLLALAFAAMLWWEKRFFRARPEAQVVNLRSMP
>NZ_CP053286.1|WP_171402851.1|473320_474301_+|type-I-F-CRISPR-associated-endonuclease-Cas1
MKNTLSPSELKTILHSKRANLYYLQYCRVLVNGGRVEYVTDEGKQSLYWNIPIANTTAIMLGTGTSVTQAAMREFARAGVLVGFCGGGGTPLFAANEVEVAVSWLTPQSEYRPTEYLQNWVSFWFDEAKRLEAARVFQQVRIEQIKRHWLGARMQREDGFVLNEERLLALVERYQSKLSESATHNELMLQEAVMTKALYKLAAEAVSYGDFIRAKRGGGSDLANRFLDHGNYLAYGLAATATWVTGLPHGLAVLHGKTRRGGLVFDVADLIKDALILPQAFIAAMAGEEEQDFRQRCLNGFQRADALDLMIDTLQETALRLGAGTS
>NZ_CP053286.1|WP_171402852.1|474297_477573_+|type-I-F-CRISPR-associated-helicase-Cas3
MNILLISQCNKFALTQTRKILDQFAERKGDRTWQTAITLQGLDTLRRALRKTARRNTAVACHWIRGANQTDLLWVVGNPRRFNVQGTVPTNSTARDVLKSQDENHWHSAEAMALMAGIAGLFHDFGKANALFQAGLIQAGAKRFQPYRHEWISLRLFQAFVGQRQDKQWLAALAEITAEDEPALLQRLYRDRQGMSESPFKTLPPLAQVIGWLIVAHHRLPAYPRQDDAERYRDTPDFACSGSWLENQLNACWNSTNQDHSDWEPKDFAQVWQFPQGTPLRSALWCAKAQKLAKRAQQLGSLVQFGNLGQQFAVHLARLALMLADHVYSAGPAVTDWQAPGYAAWANTDRQTGQRKQQLDEHNIGVGQGALLLGRLLPHVRKTLPAITRHKGFKRRSAHERYRWQDKAYDVAAALRQRSVKQGFFGVNMASTGCGKTFANARIMYALADEQEGCRFSIALGLRTLTLQTGDALRDRLHLQDDDLAVMIGSTAVQQLHKTPVSDVGSVSAEALFAEHQYVRYDGSLDDGRLSRWLAQDSRLHKLISAPVLVSTIDYLIPATEGVRGGRQIAPMLRLLTADLVLDEPDDFDIADLPALCRLVNWAGMLGTRVLLSSATLPPALVQALFNAYCTGRREYQRSCSEPGTPLNVCCAWFDEHGAVSAEIDKASMFLDEHTRFVTQRIGKLEQLMPLRQAELLPVVVAGRQKEEVLEAVGACLHSAIIQLHQHHCQQHTSGKTVSIGLIRMANIDPLVAVAQCLMQLAPPAGYRIHYCIYHSQHPLAMRSHIERRLDATLTRHQPEALWEVEEIKRAVACDDESNHLFVVLASPVAEVGRDWDLDWAIAEPSSMRSLIQLAGRIQRHRQQPPVTPNLLILNKNIKALRERNNEGLAYCRPGFESRHFRLASHDLQALLLPQQYQFPSAIPRIRERQGASKGPLFENLVDLEHRRLWETLLGTQKTTESAALWWRYPLSWNAEMQRRYPFRQSAKETQYYLSLEEDEESMVFVNRDTGPSGSKQSGDFDYPGLALADGNSLWMDNDYPQLYRRLADTLGMEFAQISERFGEINLRELDEDDTDTWRFHPALGVFRALK
>NZ_CP053286.1|WP_171402853.1|477946_479284_+|type-I-F-CRISPR-associated-protein-Csy1
MPQQGLASFIVTYIEGRREPKLEAFDKDAQKKLAAATEAEQGVLQQQLAQERRELEQRYEVRAWLTDAAVRAGQISLVTHAAKYTHSDAKGSSVYGEGEGDERYLSTAALPKPAVDAVGNAAALDVAKLLQTEHQGDSLLACLQRQDHSALAELAENAEQLEQWVLGFSQALINKQPSSHKLAKQIYFPVEDGYHLLSPLFSSSLAQALHDRLLHVRFSDETKEVNQARRAGQWHPLQLTYFPQTAVMNMGGTKPQNISYLNSARGGRVWLLPCTPPEWQSLDKPPYGCKSIFDRRGPFSYLVRGVVVQLRHFLLEVQERDNTVALRRRRQAAIDQIIGMLFNVAADIQREEWRGWSHNERCELKPAQQLWLDPYRAKDDELFCAEREKEEWQAEIADDFAVWLNRQLSIEPMNMGMVERREWRTAPLFRQRLRELEDALAEDLK
>NZ_CP053286.1|WP_171402854.1|479280_480246_+|type-I-F-CRISPR-associated-protein-Csy2
MSHVIVLRHLQVENANAVAGLTYGFPAISHFLGYVHALSRKLQASHGLILGGCGVICHRRQVHAHSSGRDYQFALTRNPLTKEAKTAAFNEEGRMHMTVSLVIECTGEIANGDIGLDQLQEHLYRLCQTQKLAGGSITRLRGVSVRGYPQQPDDVRRLVCRLLPGFALLDRSELLQQHFTALKQYRPQAEMLDAWLDFAALKMQAVPTHQDKTPEVGDKADWEYVGKPQPGYLVPLMTGYQRISPLYPAGEVLNARDASTPFCFAEAVYGVGEWCGLHRIHDLSALFWRYQTTDNGYYCRTPSAVIPQDDESADSIYLDDF
>NZ_CP053286.1|WP_171402855.1|480258_481251_+|type-I-F-CRISPR-associated-protein-Csy3
MAKSTIKTASVLAFERKLANSDAIMLAGEWGTDSWQPIGIKEKAVRGTISNRLKNAITSDPAKLDAEIQKPNLQTVDVAALPQNADTLKVAFTLRVLGNLAMPSVCNDQDYQNALQAVIEGYIAEHGFGALAARYAENLANGRFLWRNRVGAEKIVVRVTGSKTWEFNAHDYSLREFSQPKGALGELAAEIERGLAGESFALFNVEAFVRLGNGQEIFPSQELVLDSNSKKSKLLYQVEGVAAMHSQKVGNALRTIDTWHSQADSLGAIAVEPYGSVTSRGIACRQPKEKMDFYTLLDRWVIKEEKPSVEQQHYVMAVLIRGGVFGEKGE
>NZ_CP053286.1|WP_171402856.1|481260_481815_+|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDHYQDVRVLPDPEFSEPTLLSALFAKLHRALAAYGKGDIGISFPQMQRTPGAILRLHGSHDALTALGGFDWIKGLRDYANVSPIQTVPAETAFRTVSRVQVKSSVERIRRRAVNKGWLTEEQARERIPMANEQRTSLPFITLKSLSTGQHFRLFLKQGQLQEKPTPGVFSFYGLSASATVPWF
>NZ_CP053286.1|WP_171404661.1|483749_484010_-|GIY-YIG-nuclease-family-protein
MTTPVWHLYMLRLPSGMLYTGITTDVARRMAEHQAGKGELTLAFHCPAGDRSTALRLEYRVKQLSKIQKERLVSHPPLSLEYLLPG
>NZ_CP053286.1|WP_171402857.1|484272_484707_+|YhbP-family-protein
MGTDLEHIRLFIGKQHVLTLCAGDGLDMWCANCFYVFDAATMALWLMTEPHTRHGGLMLNNGRVVGTIAPKPKSIALIRGVQYRAEAVLLSGEEAEAARARYCKRFPIARAMKASVWRLDLHEVKMTDNTLGFGKKLHWARSIL
>NZ_CP053286.1|WP_171402858.1|484737_485370_+|NAD(P)H-binding-protein
MARALLVGATGLVGRELLQLLQSDPQITAIVAPTRTPLPPHGKLTNPVGDALFELLSSLQQPVDLVFCCLGTTRRAAGSADAFRYVDYQLVVESALTGRRLGAQHCLVVSALGANAHSTFLYNRTKGEMEQALREQHWPRLTLVRPSMLVGDRPAPRLMERLTLPLFRLLPGKWRAVAAKDVAQTLLQQAFTPGEGVRVLESDRLHCYRD
>NZ_CP053286.1|WP_171402859.1|485326_486109_-|phosphonate-metabolism-protein-PhnP
MQLTFLGTGGAQQVPVFGCDCPICQRARREPAFRRRACSAMLNYQGETTLLDAGLPALERRFSAGQIQRFLLTHYHMDHVQGLFPLRWGCGNSIPVYGPPDEQGCDDLFKHPGILAFQPPLAPFATVELGGMRITPLPLQHSKLTHGYLIQAAGAALAYLTDTVGLPPATAGYLQNVALDLLVLDCSLPPQPQAPRNHNDLTRAQETQRLLQPKRTLLTHISHHLDLWLLDHELPAGLELAFDHLSVSLGSSATGPTPAP

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Crispr_ID: NZ_CP053286_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053286_3

481947-483721

TypeI-F

I-F

Consensus_repeat	Method
GTTCACTGCCGTATAGGCAGCTTAGAAA	PILER-CR
GTTCACTGCCGTATAGGCAGCTTAGAAA	CRISPRCasFinder
GTTCACTGCCGTATAGGCAGCTTAGAAA	CRT

29 spacers

cas6f,cas7f,cas5f,cas8f,cas3f,cas1

The CRISPR arrays of NZ_CP053286_3

>merge|NZ_CP053286|3|481947-483721|PILER-CR,CRISPRCasFinder,CRT
GTTCACTGCCGTATAGGCAGCTTAGAAACGGGAATGTCTGGATATTCCAGTGAAAGAAATCGTTCACTGCCGTATAGGCAGCTTAGAAATCGCCGCATCCCCATCGTTGATTACGACGAACGTTCACTGCCGTATAGGCAGCTTAGAAAATCGGCAGCGCGGAAGGTGGCGACAAAATCCTGTTCACTGCCGTATAGGCAGCTTAGAAAGCACTGGCGAAAGCGTTGATCGTTGATTTCGAGTTCACTGCCGTATAGGCAGCTTAGAAACCAAAACAGAAACGAGAAATCAAACACAACGCGTTCACTGCCGTATAGGCAGCTTAGAAAAAGGGCTACATCTGACGGTCAGGGTAAGCTTAGTTCACTGCCGTATAGGCAGCTTAGAAAAGCCCGTCAATGTTACGCCGCAGTCATATATCGTTCACTGCCGTATAGGCAGCTTAGAAAACCGGCTTTTGCGCCGACATACCGCACTGTCGGGAGTCATGTTCACTGCCGTATAGGCAGCTTAGAAATGCTGAATTGTCTGAAAATGGATACCAGAAACGTTCACTGCCGTATAGGCAGCTTAGAAAATGAACGGATATTTTCGTGCATAGGCATTATGGTTCACTGCCGTATAGGCAGCTTAGAAAATGAGCACGTTCACCTCGGGCATGGCGTCCGGGTTCACTGCCGTATAGGCAGCTTAGAAATTCTTCAGCTCAACTTTCGCCGCGGCGACTTTGTTCACTGCCGTATAGGCAGCTTAGAAAATAAAGCGCAACCCGTCGCGCTTTATCAGCTAGTTCACTGCCGTATAGGCAGCTTAGAAATCCAGCGAGTTATCCAGCATCAGGCTCACCGTGTTCACTGCCGTATAGGCAGCTTAGAAAAGCCGCTTTCCGGCTGGCAGGTGCTGGCGCAGGTTCACTGCCGTATAGGCAGCTTAGAAAGTCCACGGTCAGCTTGAAGTAAGTACACTCGGGTTCACTGCCGTATAGGCAGCTTAGAAATGATTCAGGAGTCGCTGTTTGAATACGACAACGTTCACTGCCGTATAGGCAGCTTAGAAAAGCGCAGGATTGATTATGCGCGGAATAATCCTGTTCACTGCCGTATAGGCAGCTTAGAAAAGTGAAAACAACACTCAGGCCTATATTGATGCGTTCACTGCCGCATAGGCAGCTTAGAAATAAATCGGAGCAGGTTGCGCGTTGTGGAAACTGTTCACTGCCGCATAGGCAGCTTAGAAACGGTTCTCTCCCTGCCGGTCCAGCTCGTCCTCGTTCACTGCCGCATAGGCAGCTTAGAAATGGGGGCGGGGAACGCGCAAGGCCAGGAACCCGTTCACTGCCGCATAGGCAGCTTAGAAAGACTACGAAAGCTATCTGCTGTGCGATATCAAGTTCACTGCCGCATAGGCAGCTTAGAAATGGCTAACCAGGAGGCGCAGCCGGTGGCATGGGTTCACTGCCGCATAGGCAGCTTAGAAATTTAAAAGGCATAAACTATACTCCCTGCATAGTTCACTGCCGTATAGGCAGCTTAGAAAAAGGCCTTTGGCTAATGGCAGCTTTTGGATTGGTTCACTGCCGTACAGGCAGCTTAGAAAATGGGAATGATGCCAAAATTTGCCAGCCCGGCGTTCACTACCGTATGGGCGCTTAGAAATGGTCGACGGCAAGCAGGTCTCGGCATTTACCGTTCACTGCCGTATAGGCAGCTTAGAAATAACCAGCGGCGCTGTTAGGATGGTTGGTGGTGTTCACTGCCGTACAAGCAGTTTGAAAT

>NZ_CP053286|3|3|481947-483482|PILER-CR
GTTCACTGCCGTATAGGCAGCTTAGAAA	CGGGAATGTCTGGATATTCCAGTGAAAGAAATC
GTTCACTGCCGTATAGGCAGCTTAGAAA	TCGCCGCATCCCCATCGTTGATTACGACGAAC
GTTCACTGCCGTATAGGCAGCTTAGAAA	ATCGGCAGCGCGGAAGGTGGCGACAAAATCCT
GTTCACTGCCGTATAGGCAGCTTAGAAA	GCACTGGCGAAAGCGTTGATCGTTGATTTCGA
GTTCACTGCCGTATAGGCAGCTTAGAAA	CCAAAACAGAAACGAGAAATCAAACACAACGC
GTTCACTGCCGTATAGGCAGCTTAGAAA	AAGGGCTACATCTGACGGTCAGGGTAAGCTTA
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGCCCGTCAATGTTACGCCGCAGTCATATATC
GTTCACTGCCGTATAGGCAGCTTAGAAA	ACCGGCTTTTGCGCCGACATACCGCACTGTCGGGAGTCAT
GTTCACTGCCGTATAGGCAGCTTAGAAA	TGCTGAATTGTCTGAAAATGGATACCAGAAAC
GTTCACTGCCGTATAGGCAGCTTAGAAA	ATGAACGGATATTTTCGTGCATAGGCATTATG
GTTCACTGCCGTATAGGCAGCTTAGAAA	ATGAGCACGTTCACCTCGGGCATGGCGTCCGG
GTTCACTGCCGTATAGGCAGCTTAGAAA	TTCTTCAGCTCAACTTTCGCCGCGGCGACTTT
GTTCACTGCCGTATAGGCAGCTTAGAAA	ATAAAGCGCAACCCGTCGCGCTTTATCAGCTA
GTTCACTGCCGTATAGGCAGCTTAGAAA	TCCAGCGAGTTATCCAGCATCAGGCTCACCGT
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGCCGCTTTCCGGCTGGCAGGTGCTGGCGCAG
GTTCACTGCCGTATAGGCAGCTTAGAAA	GTCCACGGTCAGCTTGAAGTAAGTACACTCGG
GTTCACTGCCGTATAGGCAGCTTAGAAA	TGATTCAGGAGTCGCTGTTTGAATACGACAAC
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGCGCAGGATTGATTATGCGCGGAATAATCCT
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGTGAAAACAACACTCAGGCCTATATTGATGC
GTTCACTGCCGCATAGGCAGCTTAGAAA	TAAATCGGAGCAGGTTGCGCGTTGTGGAAACT
GTTCACTGCCGCATAGGCAGCTTAGAAA	CGGTTCTCTCCCTGCCGGTCCAGCTCGTCCTC
GTTCACTGCCGCATAGGCAGCTTAGAAA	TGGGGGCGGGGAACGCGCAAGGCCAGGAACCC
GTTCACTGCCGCATAGGCAGCTTAGAAA	GACTACGAAAGCTATCTGCTGTGCGATATCAA
GTTCACTGCCGCATAGGCAGCTTAGAAA	TGGCTAACCAGGAGGCGCAGCCGGTGGCATGG
GTTCACTGCCGCATAGGCAGCTTAGAAA	TTTAAAAGGCATAAACTATACTCCCTGCATA
GTTCACTGCCGTATAGGCAGCTTAGAAA

>NZ_CP053286|3|3|481947-483721|CRISPRCasFinder
GTTCACTGCCGTATAGGCAGCTTAGAAA	CGGGAATGTCTGGATATTCCAGTGAAAGAAATC
GTTCACTGCCGTATAGGCAGCTTAGAAA	TCGCCGCATCCCCATCGTTGATTACGACGAAC
GTTCACTGCCGTATAGGCAGCTTAGAAA	ATCGGCAGCGCGGAAGGTGGCGACAAAATCCT
GTTCACTGCCGTATAGGCAGCTTAGAAA	GCACTGGCGAAAGCGTTGATCGTTGATTTCGA
GTTCACTGCCGTATAGGCAGCTTAGAAA	CCAAAACAGAAACGAGAAATCAAACACAACGC
GTTCACTGCCGTATAGGCAGCTTAGAAA	AAGGGCTACATCTGACGGTCAGGGTAAGCTTA
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGCCCGTCAATGTTACGCCGCAGTCATATATC
GTTCACTGCCGTATAGGCAGCTTAGAAA	ACCGGCTTTTGCGCCGACATACCGCACTGTCGGGAGTCAT
GTTCACTGCCGTATAGGCAGCTTAGAAA	TGCTGAATTGTCTGAAAATGGATACCAGAAAC
GTTCACTGCCGTATAGGCAGCTTAGAAA	ATGAACGGATATTTTCGTGCATAGGCATTATG
GTTCACTGCCGTATAGGCAGCTTAGAAA	ATGAGCACGTTCACCTCGGGCATGGCGTCCGG
GTTCACTGCCGTATAGGCAGCTTAGAAA	TTCTTCAGCTCAACTTTCGCCGCGGCGACTTT
GTTCACTGCCGTATAGGCAGCTTAGAAA	ATAAAGCGCAACCCGTCGCGCTTTATCAGCTA
GTTCACTGCCGTATAGGCAGCTTAGAAA	TCCAGCGAGTTATCCAGCATCAGGCTCACCGT
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGCCGCTTTCCGGCTGGCAGGTGCTGGCGCAG
GTTCACTGCCGTATAGGCAGCTTAGAAA	GTCCACGGTCAGCTTGAAGTAAGTACACTCGG
GTTCACTGCCGTATAGGCAGCTTAGAAA	TGATTCAGGAGTCGCTGTTTGAATACGACAAC
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGCGCAGGATTGATTATGCGCGGAATAATCCT
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGTGAAAACAACACTCAGGCCTATATTGATGC
GTTCACTGCCGCATAGGCAGCTTAGAAA	TAAATCGGAGCAGGTTGCGCGTTGTGGAAACT
GTTCACTGCCGCATAGGCAGCTTAGAAA	CGGTTCTCTCCCTGCCGGTCCAGCTCGTCCTC
GTTCACTGCCGCATAGGCAGCTTAGAAA	TGGGGGCGGGGAACGCGCAAGGCCAGGAACCC
GTTCACTGCCGCATAGGCAGCTTAGAAA	GACTACGAAAGCTATCTGCTGTGCGATATCAA
GTTCACTGCCGCATAGGCAGCTTAGAAA	TGGCTAACCAGGAGGCGCAGCCGGTGGCATGG
GTTCACTGCCGCATAGGCAGCTTAGAAA	TTTAAAAGGCATAAACTATACTCCCTGCATA
GTTCACTGCCGTATAGGCAGCTTAGAAA	AAGGCCTTTGGCTAATGGCAGCTTTTGGATTG
GTTCACTGCCGTACAGGCAGCTTAGAAA	ATGGGAATGATGCCAAAATTTGCCAGCCCGGC
GTTCACTACCGTATGGGCGCTTAGAAAT	GGTCGACGGCAAGCAGGTCTCGGCATTTACC
GTTCACTGCCGTATAGGCAGCTTAGAAA	TAACCAGCGGCGCTGTTAGGATGGTTGGTGGT
GTTCACTGCCGTACAAGCAGTTTGAAAT

>NZ_CP053286|3|3|481947-483721|CRT
GTTCACTGCCGTATAGGCAGCTTAGAAA	CGGGAATGTCTGGATATTCCAGTGAAAGAAATC
GTTCACTGCCGTATAGGCAGCTTAGAAA	TCGCCGCATCCCCATCGTTGATTACGACGAAC
GTTCACTGCCGTATAGGCAGCTTAGAAA	ATCGGCAGCGCGGAAGGTGGCGACAAAATCCT
GTTCACTGCCGTATAGGCAGCTTAGAAA	GCACTGGCGAAAGCGTTGATCGTTGATTTCGA
GTTCACTGCCGTATAGGCAGCTTAGAAA	CCAAAACAGAAACGAGAAATCAAACACAACGC
GTTCACTGCCGTATAGGCAGCTTAGAAA	AAGGGCTACATCTGACGGTCAGGGTAAGCTTA
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGCCCGTCAATGTTACGCCGCAGTCATATATC
GTTCACTGCCGTATAGGCAGCTTAGAAA	ACCGGCTTTTGCGCCGACATACCGCACTGTCGGGAGTCAT
GTTCACTGCCGTATAGGCAGCTTAGAAA	TGCTGAATTGTCTGAAAATGGATACCAGAAAC
GTTCACTGCCGTATAGGCAGCTTAGAAA	ATGAACGGATATTTTCGTGCATAGGCATTATG
GTTCACTGCCGTATAGGCAGCTTAGAAA	ATGAGCACGTTCACCTCGGGCATGGCGTCCGG
GTTCACTGCCGTATAGGCAGCTTAGAAA	TTCTTCAGCTCAACTTTCGCCGCGGCGACTTT
GTTCACTGCCGTATAGGCAGCTTAGAAA	ATAAAGCGCAACCCGTCGCGCTTTATCAGCTA
GTTCACTGCCGTATAGGCAGCTTAGAAA	TCCAGCGAGTTATCCAGCATCAGGCTCACCGT
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGCCGCTTTCCGGCTGGCAGGTGCTGGCGCAG
GTTCACTGCCGTATAGGCAGCTTAGAAA	GTCCACGGTCAGCTTGAAGTAAGTACACTCGG
GTTCACTGCCGTATAGGCAGCTTAGAAA	TGATTCAGGAGTCGCTGTTTGAATACGACAAC
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGCGCAGGATTGATTATGCGCGGAATAATCCT
GTTCACTGCCGTATAGGCAGCTTAGAAA	AGTGAAAACAACACTCAGGCCTATATTGATGC
GTTCACTGCCGCATAGGCAGCTTAGAAA	TAAATCGGAGCAGGTTGCGCGTTGTGGAAACT
GTTCACTGCCGCATAGGCAGCTTAGAAA	CGGTTCTCTCCCTGCCGGTCCAGCTCGTCCTC
GTTCACTGCCGCATAGGCAGCTTAGAAA	TGGGGGCGGGGAACGCGCAAGGCCAGGAACCC
GTTCACTGCCGCATAGGCAGCTTAGAAA	GACTACGAAAGCTATCTGCTGTGCGATATCAA
GTTCACTGCCGCATAGGCAGCTTAGAAA	TGGCTAACCAGGAGGCGCAGCCGGTGGCATGG
GTTCACTGCCGCATAGGCAGCTTAGAAA	TTTAAAAGGCATAAACTATACTCCCTGCATA
GTTCACTGCCGTATAGGCAGCTTAGAAA	AAGGCCTTTGGCTAATGGCAGCTTTTGGATTG
GTTCACTGCCGTACAGGCAGCTTAGAAA	ATGGGAATGATGCCAAAATTTGCCAGCCCGGC
GTTCACTACCGTATGGGCGCTTAGAAAT	GGTCGACGGCAAGCAGGTCTCGGCATTTACC
GTTCACTGCCGTATAGGCAGCTTAGAAA	TAACCAGCGGCGCTGTTAGGATGGTTGGTGGT
GTTCACTGCCGTACAAGCAGTTTGAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053286.1\|WP_004933428.1\|487289_488426_-\|alpha-D-ribose-1-methylphosphonate-5-triphosphate-diphosphatase	unknown	unknown	gnl\|CDD\|237967
NZ_CP053286.1\|WP_171402861.1\|489146_489935_-\|phosphonate-C-P-lyase-system-protein-PhnK	unknown	unknown	gnl\|CDD\|183280
NZ_CP053286.1\|WP_015376431.1\|486121_486724_-\|phosphonate-metabolism-protein	unknown	unknown	gnl\|CDD\|132351
NZ_CP053286.1\|WP_021504239.1\|471122_471650_+\|SCP2-domain-containing-protein	unknown	unknown	gnl\|CDD\|225696
NZ_CP053286.1\|WP_171402857.1\|484272_484707_+\|YhbP-family-protein	unknown	unknown	gnl\|CDD\|235127
NZ_CP053286.1\|WP_171402856.1\|481260_481815_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|378224
NZ_CP053286.1\|WP_171402858.1\|484737_485370_+\|NAD(P)H-binding-protein	unknown	unknown	gnl\|CDD\|187560
NZ_CP053286.1\|WP_015376422.1\|469874_470870_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|223896
NZ_CP053286.1\|WP_171402854.1\|479280_480246_+\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	cd09676_cas5f_CAS-I-F	gnl\|CDD\|378221
NZ_CP053286.1\|WP_171402851.1\|473320_474301_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|132676
NZ_CP053286.1\|WP_171404661.1\|483749_484010_-\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|178979
NZ_CP053286.1\|WP_171402849.1\|468984_469863_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|237968
NZ_CP053286.1\|WP_004933420.1\|489934_490795_-\|alpha-D-ribose-1-methylphosphonate-5-phosphate-C-P-lyase-PhnJ	unknown	unknown	gnl\|CDD\|226154
NZ_CP053286.1\|WP_171402852.1\|474297_477573_+\|type-I-F-CRISPR-associated-helicase-Cas3	cas3f	cd09673_cas3f_CAS-I-F	gnl\|CDD\|274201
NZ_CP053286.1\|WP_171402850.1\|471643_472147_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|225695
NZ_CP053286.1\|WP_171402860.1\|486720_487290_-\|ribose-1,5-bisphosphokinase	unknown	unknown	gnl\|CDD\|236648
NZ_CP053286.1\|WP_171402853.1\|477946_479284_+\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	pfam09611_cas8f_CAS-I-F	gnl\|CDD\|187866
NZ_CP053286.1\|WP_047729228.1\|488425_489130_-\|phosphonate-C-P-lyase-system-protein-PhnL	unknown	unknown	gnl\|CDD\|227118
NZ_CP053286.1\|WP_171402859.1\|485326_486109_-\|phosphonate-metabolism-protein-PhnP	unknown	unknown	gnl\|CDD\|183052
NZ_CP053286.1\|WP_171402855.1\|480258_481251_+\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222

Protein	Function_ID	Function_description	E-value
NZ_CP053286.1\|WP_004933428.1\|487289_488426_-\|alpha-D-ribose-1-methylphosphonate-5-triphosphate-diphosphatase	gnl\|CDD\|237967	PRK15446, PRK15446, phosphonate metabolism protein PhnM; Provisional.	0
NZ_CP053286.1\|WP_171402861.1\|489146_489935_-\|phosphonate-C-P-lyase-system-protein-PhnK	gnl\|CDD\|183280	PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional.	0
NZ_CP053286.1\|WP_015376431.1\|486121_486724_-\|phosphonate-metabolism-protein	gnl\|CDD\|132351	TIGR03308, phn_thr-fam, phosphonate metabolism protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.	8.18181e-85
NZ_CP053286.1\|WP_021504239.1\|471122_471650_+\|SCP2-domain-containing-protein	gnl\|CDD\|225696	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism].	1.71415e-71
NZ_CP053286.1\|WP_171402857.1\|484272_484707_+\|YhbP-family-protein	gnl\|CDD\|235127	PRK03467, PRK03467, hypothetical protein; Provisional.	4.32435e-88
NZ_CP053286.1\|WP_171402856.1\|481260_481815_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|378224	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	2.68346e-91
NZ_CP053286.1\|WP_171402858.1\|484737_485370_+\|NAD(P)H-binding-protein	gnl\|CDD\|187560	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs. Atypical SDRs in this subgroup include CC3 (also known as TIP30) which is implicated in tumor suppression. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine rich NAD(P)-binding motif that resembles the extended SDRs, and have an active site triad of the SDRs (YXXXK and upstream Ser), although the upstream Asn of the usual SDR active site is substituted with Asp. For CC3, the Tyr of the triad is displaced compared to the usual SDRs and the protein is monomeric, both these observations suggest that the usual SDR catalytic activity is not present. NADP appears to serve an important role as a ligand, and may be important in the interaction with other macromolecules. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	2.72144e-67
NZ_CP053286.1\|WP_015376422.1\|469874_470870_-\|U32-family-peptidase	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	4.80562e-116
NZ_CP053286.1\|WP_171402854.1\|479280_480246_+\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	8.73708e-141
NZ_CP053286.1\|WP_171402851.1\|473320_474301_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|132676	TIGR03637, cas1_YPEST, CRISPR-associated endonuclease Cas1, subtype I-F/YPEST. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the YPEST subtype of CRISPR/Cas system.	0
NZ_CP053286.1\|WP_171404661.1\|483749_484010_-\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|178979	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated.	1.29767e-32
NZ_CP053286.1\|WP_171402849.1\|468984_469863_-\|U32-family-peptidase	gnl\|CDD\|237968	PRK15447, PRK15447, putative protease; Provisional.	0
NZ_CP053286.1\|WP_004933420.1\|489934_490795_-\|alpha-D-ribose-1-methylphosphonate-5-phosphate-C-P-lyase-PhnJ	gnl\|CDD\|226154	COG3627, PhnJ, Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism].	0
NZ_CP053286.1\|WP_171402852.1\|474297_477573_+\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0
NZ_CP053286.1\|WP_171402850.1\|471643_472147_+\|N-acetyltransferase	gnl\|CDD\|225695	COG3153, COG3153, Predicted acetyltransferase [General function prediction only].	4.63087e-57
NZ_CP053286.1\|WP_171402860.1\|486720_487290_-\|ribose-1,5-bisphosphokinase	gnl\|CDD\|236648	PRK10078, PRK10078, ribose 1,5-bisphosphokinase; Provisional.	1.27342e-99
NZ_CP053286.1\|WP_171402853.1\|477946_479284_+\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|187866	cd09735, Csy1_I-F, CRISPR/Cas system-associated protein Csy1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins; Predicted subunit of the Cascade complex; signature gene for I-F subtype; also known as Csy1 family.	0
NZ_CP053286.1\|WP_047729228.1\|488425_489130_-\|phosphonate-C-P-lyase-system-protein-PhnL	gnl\|CDD\|227118	COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism].	2.71753e-141
NZ_CP053286.1\|WP_171402859.1\|485326_486109_-\|phosphonate-metabolism-protein-PhnP	gnl\|CDD\|183052	PRK11244, phnP, carbon-phosphorus lyase complex accessory protein; Provisional.	8.66299e-152
NZ_CP053286.1\|WP_171402855.1\|480258_481251_+\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0

>NZ_CP053286.1|WP_171402856.1|481260_481815_+|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDHYQDVRVLPDPEFSEPTLLSALFAKLHRALAAYGKGDIGISFPQMQRTPGAILRLHGSHDALTALGGFDWIKGLRDYANVSPIQTVPAETAFRTVSRVQVKSSVERIRRRAVNKGWLTEEQARERIPMANEQRTSLPFITLKSLSTGQHFRLFLKQGQLQEKPTPGVFSFYGLSASATVPWF
>NZ_CP053286.1|WP_171402855.1|480258_481251_+|type-I-F-CRISPR-associated-protein-Csy3
MAKSTIKTASVLAFERKLANSDAIMLAGEWGTDSWQPIGIKEKAVRGTISNRLKNAITSDPAKLDAEIQKPNLQTVDVAALPQNADTLKVAFTLRVLGNLAMPSVCNDQDYQNALQAVIEGYIAEHGFGALAARYAENLANGRFLWRNRVGAEKIVVRVTGSKTWEFNAHDYSLREFSQPKGALGELAAEIERGLAGESFALFNVEAFVRLGNGQEIFPSQELVLDSNSKKSKLLYQVEGVAAMHSQKVGNALRTIDTWHSQADSLGAIAVEPYGSVTSRGIACRQPKEKMDFYTLLDRWVIKEEKPSVEQQHYVMAVLIRGGVFGEKGE
>NZ_CP053286.1|WP_171402854.1|479280_480246_+|type-I-F-CRISPR-associated-protein-Csy2
MSHVIVLRHLQVENANAVAGLTYGFPAISHFLGYVHALSRKLQASHGLILGGCGVICHRRQVHAHSSGRDYQFALTRNPLTKEAKTAAFNEEGRMHMTVSLVIECTGEIANGDIGLDQLQEHLYRLCQTQKLAGGSITRLRGVSVRGYPQQPDDVRRLVCRLLPGFALLDRSELLQQHFTALKQYRPQAEMLDAWLDFAALKMQAVPTHQDKTPEVGDKADWEYVGKPQPGYLVPLMTGYQRISPLYPAGEVLNARDASTPFCFAEAVYGVGEWCGLHRIHDLSALFWRYQTTDNGYYCRTPSAVIPQDDESADSIYLDDF
>NZ_CP053286.1|WP_171402853.1|477946_479284_+|type-I-F-CRISPR-associated-protein-Csy1
MPQQGLASFIVTYIEGRREPKLEAFDKDAQKKLAAATEAEQGVLQQQLAQERRELEQRYEVRAWLTDAAVRAGQISLVTHAAKYTHSDAKGSSVYGEGEGDERYLSTAALPKPAVDAVGNAAALDVAKLLQTEHQGDSLLACLQRQDHSALAELAENAEQLEQWVLGFSQALINKQPSSHKLAKQIYFPVEDGYHLLSPLFSSSLAQALHDRLLHVRFSDETKEVNQARRAGQWHPLQLTYFPQTAVMNMGGTKPQNISYLNSARGGRVWLLPCTPPEWQSLDKPPYGCKSIFDRRGPFSYLVRGVVVQLRHFLLEVQERDNTVALRRRRQAAIDQIIGMLFNVAADIQREEWRGWSHNERCELKPAQQLWLDPYRAKDDELFCAEREKEEWQAEIADDFAVWLNRQLSIEPMNMGMVERREWRTAPLFRQRLRELEDALAEDLK
>NZ_CP053286.1|WP_171402852.1|474297_477573_+|type-I-F-CRISPR-associated-helicase-Cas3
MNILLISQCNKFALTQTRKILDQFAERKGDRTWQTAITLQGLDTLRRALRKTARRNTAVACHWIRGANQTDLLWVVGNPRRFNVQGTVPTNSTARDVLKSQDENHWHSAEAMALMAGIAGLFHDFGKANALFQAGLIQAGAKRFQPYRHEWISLRLFQAFVGQRQDKQWLAALAEITAEDEPALLQRLYRDRQGMSESPFKTLPPLAQVIGWLIVAHHRLPAYPRQDDAERYRDTPDFACSGSWLENQLNACWNSTNQDHSDWEPKDFAQVWQFPQGTPLRSALWCAKAQKLAKRAQQLGSLVQFGNLGQQFAVHLARLALMLADHVYSAGPAVTDWQAPGYAAWANTDRQTGQRKQQLDEHNIGVGQGALLLGRLLPHVRKTLPAITRHKGFKRRSAHERYRWQDKAYDVAAALRQRSVKQGFFGVNMASTGCGKTFANARIMYALADEQEGCRFSIALGLRTLTLQTGDALRDRLHLQDDDLAVMIGSTAVQQLHKTPVSDVGSVSAEALFAEHQYVRYDGSLDDGRLSRWLAQDSRLHKLISAPVLVSTIDYLIPATEGVRGGRQIAPMLRLLTADLVLDEPDDFDIADLPALCRLVNWAGMLGTRVLLSSATLPPALVQALFNAYCTGRREYQRSCSEPGTPLNVCCAWFDEHGAVSAEIDKASMFLDEHTRFVTQRIGKLEQLMPLRQAELLPVVVAGRQKEEVLEAVGACLHSAIIQLHQHHCQQHTSGKTVSIGLIRMANIDPLVAVAQCLMQLAPPAGYRIHYCIYHSQHPLAMRSHIERRLDATLTRHQPEALWEVEEIKRAVACDDESNHLFVVLASPVAEVGRDWDLDWAIAEPSSMRSLIQLAGRIQRHRQQPPVTPNLLILNKNIKALRERNNEGLAYCRPGFESRHFRLASHDLQALLLPQQYQFPSAIPRIRERQGASKGPLFENLVDLEHRRLWETLLGTQKTTESAALWWRYPLSWNAEMQRRYPFRQSAKETQYYLSLEEDEESMVFVNRDTGPSGSKQSGDFDYPGLALADGNSLWMDNDYPQLYRRLADTLGMEFAQISERFGEINLRELDEDDTDTWRFHPALGVFRALK
>NZ_CP053286.1|WP_171402851.1|473320_474301_+|type-I-F-CRISPR-associated-endonuclease-Cas1
MKNTLSPSELKTILHSKRANLYYLQYCRVLVNGGRVEYVTDEGKQSLYWNIPIANTTAIMLGTGTSVTQAAMREFARAGVLVGFCGGGGTPLFAANEVEVAVSWLTPQSEYRPTEYLQNWVSFWFDEAKRLEAARVFQQVRIEQIKRHWLGARMQREDGFVLNEERLLALVERYQSKLSESATHNELMLQEAVMTKALYKLAAEAVSYGDFIRAKRGGGSDLANRFLDHGNYLAYGLAATATWVTGLPHGLAVLHGKTRRGGLVFDVADLIKDALILPQAFIAAMAGEEEQDFRQRCLNGFQRADALDLMIDTLQETALRLGAGTS
>NZ_CP053286.1|WP_171402850.1|471643_472147_+|N-acetyltransferase
MLIRVEIPVDAAGIDALLRRAFGRDDEADLVQQLREDGLLTLGVVATDDEGGVVGYAAFSPVDVAGEDRQWVALAPLAVDESLRRQGLAEKLVYEGLDSLNEFSYAAVVVVGDPAYYGRFGFKPAAAYGLHCRWPDTESAFQVYPLAEDALNGVSGEVAFSAPFNRF
>NZ_CP053286.1|WP_021504239.1|471122_471650_+|SCP2-domain-containing-protein
MTVLEQLRARLVRQGPSLLRIPLKFTPFALQRQLLQQVLSWQFRQALADGDLEFLESRWLKIEVRDLALHWFMTVENDKLVVSQHAEADVSFSGDANDLILIAARKQDPDTLFFQRRLQIEGDTELGLYVKNLMDAIELESMPAPLRMGLLQLADFVEAGLQEGTASASRVAVSC
>NZ_CP053286.1|WP_015376422.1|469874_470870_-|U32-family-peptidase
MELLCPAGNLPALKAAVDNGADAVYIGLKDDTNARHFAGLNFTEKKLQEAVDYVHRHGRKLHIAINTFAHPDGYARWQRAVDMAAQLGADALILADLAMLEYAAQRYPQLERHVSVQASATNEEAIRFYQRNFEVGRVVLPRVLSMHQVKQLARTSPVPLEVFAFGSLCIMAEGRCYLSSYLTGESPNTVGACSPARFVRWQQTPQGMESRLNDVLIDRYQDHENAGYPTLCKGRYLVDDVRYHALEEPTSLNTLELLPELLAANIASVKIEGRQRSPAYVSQVARVWRQAIDRCQADPAAYRADAAWMETLGAMSEGTQTTLGAYHRKWQ
>NZ_CP053286.1|WP_171402849.1|468984_469863_-|U32-family-peptidase
MKYALGPVLYYWPKNDIATFYQQAADSSADIIYLGESVCAKRREMKVGDWLALAREIAHNGKQVVLSTLALLQAPSELNELKRYVENGEFLFEANDLGAVNMAAERGLPFVAGHALNCYNAYTLRLLRRQGMIRWCMPVELSRDWLANLLTQCDELGFRHDFEVEVLSYGHLPLAYSARCFTARSENRGKDECETCCIKYPQGRMMRSQEQQQVFVLNGIQTMSGYCYNLGNELPNMQGLVDIVRLSPQGAETLAQIDAFRANERGEQPLALTDHADCNGYWRRVAGLELVG
>NZ_CP053286.1|WP_171404661.1|483749_484010_-|GIY-YIG-nuclease-family-protein
MTTPVWHLYMLRLPSGMLYTGITTDVARRMAEHQAGKGELTLAFHCPAGDRSTALRLEYRVKQLSKIQKERLVSHPPLSLEYLLPG
>NZ_CP053286.1|WP_171402857.1|484272_484707_+|YhbP-family-protein
MGTDLEHIRLFIGKQHVLTLCAGDGLDMWCANCFYVFDAATMALWLMTEPHTRHGGLMLNNGRVVGTIAPKPKSIALIRGVQYRAEAVLLSGEEAEAARARYCKRFPIARAMKASVWRLDLHEVKMTDNTLGFGKKLHWARSIL
>NZ_CP053286.1|WP_171402858.1|484737_485370_+|NAD(P)H-binding-protein
MARALLVGATGLVGRELLQLLQSDPQITAIVAPTRTPLPPHGKLTNPVGDALFELLSSLQQPVDLVFCCLGTTRRAAGSADAFRYVDYQLVVESALTGRRLGAQHCLVVSALGANAHSTFLYNRTKGEMEQALREQHWPRLTLVRPSMLVGDRPAPRLMERLTLPLFRLLPGKWRAVAAKDVAQTLLQQAFTPGEGVRVLESDRLHCYRD
>NZ_CP053286.1|WP_171402859.1|485326_486109_-|phosphonate-metabolism-protein-PhnP
MQLTFLGTGGAQQVPVFGCDCPICQRARREPAFRRRACSAMLNYQGETTLLDAGLPALERRFSAGQIQRFLLTHYHMDHVQGLFPLRWGCGNSIPVYGPPDEQGCDDLFKHPGILAFQPPLAPFATVELGGMRITPLPLQHSKLTHGYLIQAAGAALAYLTDTVGLPPATAGYLQNVALDLLVLDCSLPPQPQAPRNHNDLTRAQETQRLLQPKRTLLTHISHHLDLWLLDHELPAGLELAFDHLSVSLGSSATGPTPAP
>NZ_CP053286.1|WP_015376431.1|486121_486724_-|phosphonate-metabolism-protein
MNDFAQPKIGDNVTLNRTRLGQYVHLADDAILEEVEMGDYSYTAGHNQIFYATIGKFVSIASYARINPGNHPTYQRIAQHHFTYRASEYGLGEDDAAFFDWRREHHVTVGHDVWIGHNAILMPGVSVGNGAVIGSAAVVTKDVEPYSIVAGVAAKKIGMRFDDALIERIERSQWWHWDHATLQARLADFRDINRFAQKYL
>NZ_CP053286.1|WP_171402860.1|486720_487290_-|ribose-1,5-bisphosphokinase
MARLIYLMGPSGAGKDSLLAALRADADRAPLVAHRYITRPADAGCENHVALSEPEFLRRRAKGLFALDWQAHQQRYAFGIEVDLWLLQGIDVAVNGSRAHLPQAQQRYGAQLLPVCLQVSAAILRQRLQDRGRESAEQIEQRLARAAEYQQSLPAGCRVLHNDGPLDDTLAALLALLPTSTRQTQDATP
>NZ_CP053286.1|WP_004933428.1|487289_488426_-|alpha-D-ribose-1-methylphosphonate-5-triphosphate-diphosphatase
MIVNNVKLVLDDQVVQGSLEMQDGVIRSFADGPSRLPQALDGDGGWLLPGLIELHTDNLDKFFTPRPNVDWPAHSAMSSHDALMVANGITTVLDAVAIGDVRDGGHRLENLQKMIDAVIHSQRAGVNRAEHRLHLRCELPHESTLPLFEQLMDKPGVSLVSLMDHSPGQRQFASREKYREYYQGKYHLNDQQMSEYEEQQVALSARWAAPNREAIAAHCRARRISLASHDDATAAHVAESCALGSAIAEFPTTEAAARASHQQGLQVLMGAPNIVRGGSHSGNVAAHHLAALGVLDILSSDYYPASLLDAAFRLAADERNAYDLPQAVRMITRNPARALDLQDRGTIAEGLRADLVLARPHGEHVYVQNVWRQGRQVF
>NZ_CP053286.1|WP_047729228.1|488425_489130_-|phosphonate-C-P-lyase-system-protein-PhnL
MTMQIRVEHLSKTFVLHQQYGTRLPVLHDANLTVHGGECVVLHGHSGSGKSTLLRSLYANYLPDSGHIWINHQGDWLDMVSADARQILAVRRHTLGWVSQFLRVIPRISALEVVMQPLLEQGVERAECRERAEALLAALNVPQRLWPLAPSTFSGGEQQRVNIARGFIVDYPILLLDEPTASLDSRNSAAVVQLIERAKARGAAIVGIFHDEGVRQQVADRLYDMQAPQALEAL
>NZ_CP053286.1|WP_171402861.1|489146_489935_-|phosphonate-C-P-lyase-system-protein-PhnK
MTSTPLSTTPLLSVNRLTHLYAPGKGFSDVSFDIYPGEVLGIVGESGSGKTTLLKSISARLAPQRGQILYRPQADQEHDLYAMAESDRRRLLRTDWGVVHQHPIDGLRPQVSAGGNIGERLMAIGQRHYGDIRRQAGQWLEDVEIPLSRLDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRNLVVEMQLAAVIVTHDLGVARLLAHRLLVMKQGEVVESGLTDRVLDDPHHPYTQLLVSSVLS
>NZ_CP053286.1|WP_004933420.1|489934_490795_-|alpha-D-ribose-1-methylphosphonate-5-phosphate-C-P-lyase-PhnJ
MSEVLTGYNLGYLDEQTKRMIRRAILKAVAIPGYQVPFGGREMPMPYGWGTGGIQLTASVIGRADVLKVIDQGADDTTNAVSIRRFFQRVAGVETTERTPEATLIQTRHRIPETALREDQILIYQVPIPEPLRFIEPRETETRKMHALEEYGVMQVKLYEDIARYGHIATTYAYPVKVNDRYVMDPSPIPKFDNPKMHMMPALQLFGAGREKRIYALPPFTKVESLDFDDHPFSVQQWDEPCALCGSRHSYLDEVVLDDRGNRMFVCSDTDYCRQQLAQSSQEAQH

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP053286_1	1.4\|468824\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	468824-468855	32	NZ_CP018921	Serratia marcescens strain UMH7 plasmid unnamed4, complete sequence	6085-6116	0	1.0
NZ_CP053286_3	3.3\|482096\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	482096-482127	32	MH553517	Serratia phage Scapp, complete genome	39256-39287	1	0.969
NZ_CP053286_3	3.4\|482156\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	482156-482187	32	MH553517	Serratia phage Scapp, complete genome	39876-39907	1	0.969
NZ_CP053286_3	3.17\|482944\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	482944-482975	32	MN855649	Myoviridae sp. isolate 327, complete genome	1890-1921	2	0.938
NZ_CP053286_2	2.6\|472820\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	472820-472851	32	MN855647	Bacteriophage sp. isolate 262, complete genome	7687-7718	3	0.906
NZ_CP053286_3	3.15\|482824\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	482824-482855	32	NZ_CP029232	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence	1501313-1501344	5	0.844
NZ_CP053286_3	3.18\|483004\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	483004-483035	32	NZ_CP044185	Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403	31514-31545	5	0.844
NZ_CP053286_3	3.18\|483004\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	483004-483035	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	5583-5614	5	0.844
NZ_CP053286_3	3.18\|483004\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	483004-483035	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	43568-43599	5	0.844
NZ_CP053286_3	3.18\|483004\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	483004-483035	32	NZ_CP054718	Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence	109560-109591	5	0.844
NZ_CP053286_1	1.1\|468644\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	468644-468675	32	NZ_CP010057	Hymenobacter sp. DG25B plasmid, complete sequence	46084-46115	6	0.812
NZ_CP053286_2	2.5\|472760\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	472760-472791	32	NZ_CP022669	Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR4, complete sequence	86127-86158	6	0.812
NZ_CP053286_3	3.14\|482764\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	482764-482795	32	HM480106	Synechococcus phage S-CBS1, complete genome	26379-26410	6	0.812
NZ_CP053286_3	3.15\|482824\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	482824-482855	32	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	563854-563885	6	0.812
NZ_CP053286_3	3.15\|482824\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	482824-482855	32	NZ_CP015419	Rhodovulum sulfidophilum DSM 1374 plasmid unnamed1, complete sequence	22816-22847	6	0.812
NZ_CP053286_3	3.15\|482824\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	482824-482855	32	NZ_CP015422	Rhodovulum sulfidophilum strain SNK001 plasmid, complete sequence	22716-22747	6	0.812
NZ_CP053286_3	3.15\|482824\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	482824-482855	32	NZ_AP014802	Rhodovulum sulfidophilum plasmid Plasmid2 DNA, complete genome, strain: DSM 2351	95826-95857	6	0.812
NZ_CP053286_3	3.24\|483364\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	483364-483395	32	KC460990	Serratia phage Eta, complete genome	16715-16746	6	0.812
NZ_CP053286_3	3.27\|483543\|32\|NZ_CP053286\|CRISPRCasFinder,CRT	483543-483574	32	NZ_CP032678	Pseudomonas sp. Leaf58 plasmid pBASL58, complete sequence	534247-534278	6	0.812
NZ_CP053286_3	3.28\|483603\|31\|NZ_CP053286\|CRISPRCasFinder,CRT	483603-483633	31	NC_013860	Azospirillum sp. B510 plasmid pAB510f, complete sequence	22500-22530	6	0.806
NZ_CP053286_1	1.1\|468644\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	468644-468675	32	NZ_CP040937	Hymenobacter sp. DG01 plasmid unnamed, complete sequence	15929-15960	7	0.781
NZ_CP053286_2	2.9\|473000\|33\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	473000-473032	33	NZ_CP021525	Acetobacter ascendens strain SRCM101447 plasmid pAP1447-1	222267-222299	7	0.788
NZ_CP053286_2	2.9\|473000\|33\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	473000-473032	33	NC_017130	Acetobacter pasteurianus IFO 3283-26 plasmid pAPA26-013, complete sequence	131562-131594	7	0.788
NZ_CP053286_2	2.9\|473000\|33\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	473000-473032	33	NC_017134	Acetobacter pasteurianus IFO 3283-32 plasmid pAPA32-012, complete sequence	131586-131618	7	0.788
NZ_CP053286_2	2.9\|473000\|33\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	473000-473032	33	NC_017101	Acetobacter pasteurianus IFO 3283-03 plasmid pAPA03-010, complete sequence	131570-131602	7	0.788
NZ_CP053286_2	2.9\|473000\|33\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	473000-473032	33	NC_013210	Acetobacter pasteurianus IFO 3283-01 plasmid pAPA01-011, complete sequence	131942-131974	7	0.788
NZ_CP053286_2	2.9\|473000\|33\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	473000-473032	33	NC_017136	Acetobacter pasteurianus IFO 3283-12 plasmid pAPA12-014, complete sequence	131554-131586	7	0.788
NZ_CP053286_3	3.3\|482096\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	482096-482127	32	NZ_CP021815	Sinorhizobium meliloti strain M270 plasmid accessoryA, complete sequence	247072-247103	7	0.781
NZ_CP053286_3	3.11\|482584\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	482584-482615	32	NC_008043	Ruegeria sp. TM1040 megaplasmid, complete sequence	456324-456355	7	0.781
NZ_CP053286_3	3.11\|482584\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	482584-482615	32	NZ_CP025432	Paracoccus zhejiangensis strain J6 plasmid pPZ02, complete sequence	31881-31912	7	0.781
NZ_CP053286_3	3.15\|482824\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	482824-482855	32	NZ_CP042265	Litoreibacter sp. LN3S51 plasmid unnamed4, complete sequence	380484-380515	7	0.781
NZ_CP053286_3	3.16\|482884\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	482884-482915	32	NC_041880	Pseudomonas phage phiPMW, complete genome	65111-65142	7	0.781
NZ_CP053286_3	3.28\|483603\|31\|NZ_CP053286\|CRISPRCasFinder,CRT	483603-483633	31	NZ_CP024310	Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence	1666635-1666665	7	0.774
NZ_CP053286_3	3.28\|483603\|31\|NZ_CP053286\|CRISPRCasFinder,CRT	483603-483633	31	NZ_CP023064	Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence	1469191-1469221	7	0.774
NZ_CP053286_3	3.28\|483603\|31\|NZ_CP053286\|CRISPRCasFinder,CRT	483603-483633	31	MK433261	Gordonia phage Msay19, complete genome	53333-53363	7	0.774
NZ_CP053286_3	3.28\|483603\|31\|NZ_CP053286\|CRISPRCasFinder,CRT	483603-483633	31	MG757155	Gordonia phage Boneham, complete genome	53044-53074	7	0.774
NZ_CP053286_3	3.28\|483603\|31\|NZ_CP053286\|CRISPRCasFinder,CRT	483603-483633	31	NC_048820	Gordonia phage Jellybones, complete genome	52719-52749	7	0.774
NZ_CP053286_3	3.28\|483603\|31\|NZ_CP053286\|CRISPRCasFinder,CRT	483603-483633	31	MK433263	Gordonia phage FelixAlejandro, complete genome	53447-53477	7	0.774
NZ_CP053286_3	3.28\|483603\|31\|NZ_CP053286\|CRISPRCasFinder,CRT	483603-483633	31	MG757152	Gordonia phage Adgers, complete genome	51479-51509	7	0.774
NZ_CP053286_3	3.28\|483603\|31\|NZ_CP053286\|CRISPRCasFinder,CRT	483603-483633	31	MK359302	Gordonia phage Sombrero, complete genome	51320-51350	7	0.774
NZ_CP053286_3	3.28\|483603\|31\|NZ_CP053286\|CRISPRCasFinder,CRT	483603-483633	31	NC_047892	Gordonia phage BirksAndSocks, complete genome	53143-53173	7	0.774
NZ_CP053286_3	3.28\|483603\|31\|NZ_CP053286\|CRISPRCasFinder,CRT	483603-483633	31	MK433267	Gordonia phage Butterball, complete genome	53049-53079	7	0.774
NZ_CP053286_1	1.3\|468764\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	468764-468795	32	NZ_AP014810	Methylorubrum populi strain P-1M plasmid pMPPM01, complete sequence	47913-47944	8	0.75
NZ_CP053286_3	3.12\|482644\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	482644-482675	32	NZ_CP049244	Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence	430214-430245	8	0.75
NZ_CP053286_3	3.15\|482824\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	482824-482855	32	NZ_CP023071	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence	548527-548558	8	0.75
NZ_CP053286_3	3.15\|482824\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	482824-482855	32	NZ_CP012632	Escherichia coli strain SF-173 plasmid pSF-173-1, complete sequence	20013-20044	8	0.75
NZ_CP053286_3	3.15\|482824\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	482824-482855	32	NZ_CP012498	Escherichia coli strain 06-00048 plasmid pCFSAN004178P_02, complete sequence	95722-95753	8	0.75
NZ_CP053286_3	3.15\|482824\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	482824-482855	32	NZ_CP030197	Salmonella enterica strain SA20051401 plasmid pSA20051401.1, complete sequence	96556-96587	8	0.75
NZ_CP053286_3	3.15\|482824\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	482824-482855	32	NZ_CP027237	Actinomyces sp. oral taxon 897 strain F0631 plasmid unnamed1, complete sequence	392-423	8	0.75
NZ_CP053286_3	3.15\|482824\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	482824-482855	32	NZ_CP023389	Escherichia coli strain 1105 plasmid p74, complete sequence	35060-35091	8	0.75
NZ_CP053286_3	3.15\|482824\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	482824-482855	32	NZ_CP030177	Salmonella enterica subsp. enterica serovar Milwaukee str. SA19950795 plasmid pIncFII.2, complete sequence	83683-83714	8	0.75
NZ_CP053286_3	3.15\|482824\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	482824-482855	32	CP052261	Klebsiella pneumoniae strain E16KP0290 plasmid pE16KP0290-3, complete sequence	26109-26140	8	0.75
NZ_CP053286_3	3.20\|483124\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	483124-483155	32	JQ182730	Enterobacteria phage mEp237, complete genome	36341-36372	8	0.75
NZ_CP053286_3	3.20\|483124\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	483124-483155	32	NZ_CP022288	Bacillus subtilis strain SX01705 plasmid pSX01705-1, complete sequence	28978-29009	8	0.75
NZ_CP053286_3	3.20\|483124\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	483124-483155	32	NZ_CP035229	Bacillus licheniformis strain SRCM103529 plasmid unnamed1, complete sequence	72377-72408	8	0.75
NZ_CP053286_3	3.21\|483184\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	483184-483215	32	CP042595	Streptomyces albogriseolus strain LBX-2 plasmid pSALBX2, complete sequence	164829-164860	8	0.75
NZ_CP053286_3	3.22\|483244\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	483244-483275	32	NC_014310	Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence	1917602-1917633	8	0.75
NZ_CP053286_3	3.24\|483364\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	483364-483395	32	MT843275	Serratia phage vB_SspM_BZS1, complete genome	28569-28600	8	0.75
NZ_CP053286_3	3.24\|483364\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	483364-483395	32	NC_048758	Serratia phage Parlo, complete genome	17194-17225	8	0.75
NZ_CP053286_3	3.24\|483364\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	483364-483395	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	5097465-5097496	8	0.75
NZ_CP053286_3	3.24\|483364\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	483364-483395	32	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	910043-910074	8	0.75
NZ_CP053286_3	3.24\|483364\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	483364-483395	32	NZ_CP007794	Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence	1726268-1726299	8	0.75
NZ_CP053286_3	3.28\|483603\|31\|NZ_CP053286\|CRISPRCasFinder,CRT	483603-483633	31	NC_007974	Cupriavidus metallidurans CH34 megaplasmid, complete sequence	2195917-2195947	8	0.742
NZ_CP053286_3	3.28\|483603\|31\|NZ_CP053286\|CRISPRCasFinder,CRT	483603-483633	31	NZ_CP046333	Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3	1431388-1431418	8	0.742
NZ_CP053286_2	2.1\|472520\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	472520-472551	32	NC_016654	Rhodococcus phage REQ3, complete genome	32328-32359	9	0.719
NZ_CP053286_2	2.1\|472520\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	472520-472551	32	NC_016585	Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence	1004581-1004612	9	0.719
NZ_CP053286_2	2.2\|472580\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	472580-472611	32	NZ_CP017672	Providencia rettgeri strain RB151 plasmid pRB151-NDM, complete sequence	5411-5442	9	0.719
NZ_CP053286_3	3.3\|482096\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	482096-482127	32	NZ_CP024314	Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence	2357315-2357346	9	0.719
NZ_CP053286_3	3.10\|482524\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	482524-482555	32	NZ_CP010826	Thermus aquaticus Y51MC23 plasmid pTA78, complete sequence	57474-57505	9	0.719
NZ_CP053286_3	3.19\|483064\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	483064-483095	32	FN436269	Acaryochloris phage A-HIS2, complete genome	37591-37622	9	0.719
NZ_CP053286_3	3.21\|483184\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	483184-483215	32	MK977695	Gordonia phage Pupper, complete genome	77245-77276	9	0.719
NZ_CP053286_3	3.21\|483184\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	483184-483215	32	NZ_CP046163	Vibrio sp. THAF191c plasmid pTHAF191c_b, complete sequence	1029217-1029248	9	0.719
NZ_CP053286_3	3.21\|483184\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	483184-483215	32	NZ_CP015867	Streptomyces parvulus strain 2297 plasmid pSPA1, complete sequence	193116-193147	9	0.719
NZ_CP053286_3	3.21\|483184\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	483184-483215	32	NZ_CP046066	Vibrio sp. THAF191d plasmid pTHAF191d_b, complete sequence	1212603-1212634	9	0.719
NZ_CP053286_3	3.21\|483184\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	483184-483215	32	NZ_LR699555	Paraburkholderia sp. Msb3 isolate PDMSB31 plasmid pI	182240-182271	9	0.719
NZ_CP053286_3	3.21\|483184\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	483184-483215	32	NZ_CP045356	Vibrio sp. THAF64 plasmid pTHAF64_a, complete sequence	547300-547331	9	0.719
NZ_CP053286_3	3.28\|483603\|31\|NZ_CP053286\|CRISPRCasFinder,CRT	483603-483633	31	NZ_CP022991	Paraburkholderia aromaticivorans strain BN5 plasmid pBN1, complete sequence	458893-458923	9	0.71
NZ_CP053286_3	3.28\|483603\|31\|NZ_CP053286\|CRISPRCasFinder,CRT	483603-483633	31	NZ_CP021071	Mesorhizobium sp. WSM1497 plasmid pWSM1497, complete sequence	330305-330335	9	0.71
NZ_CP053286_3	3.28\|483603\|31\|NZ_CP053286\|CRISPRCasFinder,CRT	483603-483633	31	NZ_CP021071	Mesorhizobium sp. WSM1497 plasmid pWSM1497, complete sequence	330713-330743	9	0.71
NZ_CP053286_3	3.28\|483603\|31\|NZ_CP053286\|CRISPRCasFinder,CRT	483603-483633	31	NZ_CP015322	Mesorhizobium amorphae CCNWGS0123 plasmid pM0123d, complete sequence	917446-917476	9	0.71
NZ_CP053286_1	1.1\|468644\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	468644-468675	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	4746448-4746479	10	0.688
NZ_CP053286_1	1.3\|468764\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	468764-468795	32	NZ_HG938354	Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence	952144-952175	10	0.688
NZ_CP053286_2	2.4\|472700\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	472700-472731	32	NZ_CP013482	Pandoraea apista strain DSM 16535 plasmid pPA35, complete sequence	52245-52276	10	0.688
NZ_CP053286_3	3.3\|482096\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	482096-482127	32	NZ_CP007517	Rubrobacter radiotolerans strain RSPS-4 plasmid 3, complete sequence	18193-18224	10	0.688
NZ_CP053286_3	3.3\|482096\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	482096-482127	32	NZ_CP022775	Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence	1294667-1294698	10	0.688
NZ_CP053286_3	3.3\|482096\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	482096-482127	32	NZ_CP022764	Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence	1294804-1294835	10	0.688
NZ_CP053286_3	3.3\|482096\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	482096-482127	32	NZ_CP022797	Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence	1294787-1294818	10	0.688
NZ_CP053286_3	3.3\|482096\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	482096-482127	32	NZ_CP022758	Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence	1294776-1294807	10	0.688
NZ_CP053286_3	3.4\|482156\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	482156-482187	32	NZ_CP029446	Serratia marcescens strain CAV1761 plasmid pKPC_CAV1761, complete sequence	13452-13483	10	0.688
NZ_CP053286_3	3.4\|482156\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	482156-482187	32	NZ_CP029429	Klebsiella quasipneumoniae strain CAV2018 plasmid pKPC_CAV2018-63, complete sequence	48415-48446	10	0.688
NZ_CP053286_3	3.4\|482156\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	482156-482187	32	NZ_CP011639	Serratia marcescens strain CAV1492 plasmid pKPC_CAV1492, complete sequence	4343-4374	10	0.688
NZ_CP053286_3	3.4\|482156\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	482156-482187	32	NC_019899	Klebsiella pneumoniae strain BK31567 plasmid pBK31567, complete sequence	4343-4374	10	0.688
NZ_CP053286_3	3.4\|482156\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	482156-482187	32	NZ_CP029439	Klebsiella quasipneumoniae strain CAV1947 plasmid pKPC_CAV1947-56, complete sequence	15119-15150	10	0.688
NZ_CP053286_3	3.9\|482464\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	482464-482495	32	NZ_CP023302	Lactobacillus plantarum strain pc-26 plasmid p.pc-2601, complete sequence	2709-2740	10	0.688
NZ_CP053286_3	3.11\|482584\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	482584-482615	32	NZ_KM017071	Sphingomonas sp. JE1 plasmid pJE1, complete sequence	185747-185778	10	0.688
NZ_CP053286_3	3.16\|482884\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	482884-482915	32	NZ_CP031358	Erythrobacter aureus strain YH-07 plasmid unnamed, complete sequence	401040-401071	10	0.688
NZ_CP053286_3	3.20\|483124\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	483124-483155	32	NZ_CP015322	Mesorhizobium amorphae CCNWGS0123 plasmid pM0123d, complete sequence	817731-817762	10	0.688
NZ_CP053286_3	3.21\|483184\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	483184-483215	32	KY365739	Streptomyces phage BabyGotBac, complete genome	37032-37063	10	0.688
NZ_CP053286_3	3.21\|483184\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	483184-483215	32	MH178382	Streptomyces phage Salete, complete genome	37029-37060	10	0.688
NZ_CP053286_3	3.21\|483184\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	483184-483215	32	KU189325	Streptomyces phage Maih, complete genome	37031-37062	10	0.688
NZ_CP053286_3	3.21\|483184\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	483184-483215	32	MH178381	Streptomyces phage BayC, complete genome	37029-37060	10	0.688
NZ_CP053286_3	3.21\|483184\|32\|NZ_CP053286\|PILER-CR,CRISPRCasFinder,CRT	483184-483215	32	KP876466	Streptomyces phage TP1604, complete genome	37035-37066	10	0.688

1. spacer 1.4|468824|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018921 (Serratia marcescens strain UMH7 plasmid unnamed4, complete sequence) position: , mismatch: 0, identity: 1.0

gtctccgtcggcaacggttcccatcggatttt	CRISPR spacer
gtctccgtcggcaacggttcccatcggatttt	Protospacer
********************************

2. spacer 3.3|482096|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to MH553517 (Serratia phage Scapp, complete genome) position: , mismatch: 1, identity: 0.969

atcggcagcgcggaaggtggcgacaaaatcct	CRISPR spacer
atcggcagcgcggaaggcggcgacaaaatcct	Protospacer
*****************.**************

3. spacer 3.4|482156|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to MH553517 (Serratia phage Scapp, complete genome) position: , mismatch: 1, identity: 0.969

gcactggcgaaagcgttgatcgttgatttcga	CRISPR spacer
gcgctggcgaaagcgttgatcgttgatttcga	Protospacer
**.*****************************

4. spacer 3.17|482944|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to MN855649 (Myoviridae sp. isolate 327, complete genome) position: , mismatch: 2, identity: 0.938

tgattcaggagtcgctgtttgaatacgacaac	CRISPR spacer
tgattcaggagtcgctgtttgagtacgacaag	Protospacer
**********************.********

5. spacer 2.6|472820|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to MN855647 (Bacteriophage sp. isolate 262, complete genome) position: , mismatch: 3, identity: 0.906

agaaactcaccttgcttgcggtatttgcgctg	CRISPR spacer
agatactcaccttgctttcggtatttgcgccg	Protospacer
*** ************* ************.*

6. spacer 3.15|482824|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029232 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence) position: , mismatch: 5, identity: 0.844

agccgctttccggctggcaggtgctggcgcag--	CRISPR spacer
agccgctttccggctggcaagggc--gcacagcc	Protospacer
*******************.* **  **.***

7. spacer 3.18|483004|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044185 (Salmonella enterica subsp. enterica strain AR-0403 plasmid pAR-0403) position: , mismatch: 5, identity: 0.844

-agcgcaggattgattatgcgcggaataatcct	CRISPR spacer
aggcgc-ggattgactatgcgcgtaataatcca	Protospacer
 .**** *******.******** ********

8. spacer 3.18|483004|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.844

-agcgcaggattgattatgcgcggaataatcct	CRISPR spacer
aggcgc-ggattgactatgcgcgtaataatcca	Protospacer
 .**** *******.******** ********

9. spacer 3.18|483004|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.844

-agcgcaggattgattatgcgcggaataatcct	CRISPR spacer
aggcgc-ggattgactatgcgcgtaataatcca	Protospacer
 .**** *******.******** ********

10. spacer 3.18|483004|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.844

-agcgcaggattgattatgcgcggaataatcct	CRISPR spacer
aggcgc-ggattgactatgcgcgtaataatcca	Protospacer
 .**** *******.******** ********

11. spacer 1.1|468644|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010057 (Hymenobacter sp. DG25B plasmid, complete sequence) position: , mismatch: 6, identity: 0.812

gattcgaacttgcgtccgccggcctcgtcgat	CRISPR spacer
tgctcgaacttgcgcccgccggcctcgttgtt	Protospacer
 ..***********.*************.* *

12. spacer 2.5|472760|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022669 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR4, complete sequence) position: , mismatch: 6, identity: 0.812

atccccagcggcgagttcaatatct-cgcaaaa	CRISPR spacer
cgccccggcggcgagttcaatctctgcgccaa-	Protospacer
  ****.************** *** *** **

13. spacer 3.14|482764|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to HM480106 (Synechococcus phage S-CBS1, complete genome) position: , mismatch: 6, identity: 0.812

tccagcgagttatccagcatcaggctcaccgt-	CRISPR spacer
accagcgagtcatccagcagcaggc-cgccatc	Protospacer
 *********.******** ***** *.**.*

14. spacer 3.15|482824|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 6, identity: 0.812

agccgctttccggctggcaggtgctggcgcag--	CRISPR spacer
agccgctttccggctggcaagggc--acacagtc	Protospacer
*******************.* **  .*.***

15. spacer 3.15|482824|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015419 (Rhodovulum sulfidophilum DSM 1374 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.812

--agccgctttccggctggcaggtgctggcgcag	CRISPR spacer
tcagcca--ttccggcgggcaggcgctggcgctg	Protospacer
  ****.  ******* ******.******** *

16. spacer 3.15|482824|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015422 (Rhodovulum sulfidophilum strain SNK001 plasmid, complete sequence) position: , mismatch: 6, identity: 0.812

--agccgctttccggctggcaggtgctggcgcag	CRISPR spacer
tcagcca--ttccggcgggcaggcgctggcgctg	Protospacer
  ****.  ******* ******.******** *

17. spacer 3.15|482824|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014802 (Rhodovulum sulfidophilum plasmid Plasmid2 DNA, complete genome, strain: DSM 2351) position: , mismatch: 6, identity: 0.812

--agccgctttccggctggcaggtgctggcgcag	CRISPR spacer
tcagcca--ttccggcgggcaggcgctggcgctg	Protospacer
  ****.  ******* ******.******** *

18. spacer 3.24|483364|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to KC460990 (Serratia phage Eta, complete genome) position: , mismatch: 6, identity: 0.812

tggctaaccaggaggcgcagccggtggcatgg	CRISPR spacer
tgactaaccgggaggcgcagccggcgatgtgg	Protospacer
**.******.**************.*...***

19. spacer 3.27|483543|32|NZ_CP053286|CRISPRCasFinder,CRT matches to NZ_CP032678 (Pseudomonas sp. Leaf58 plasmid pBASL58, complete sequence) position: , mismatch: 6, identity: 0.812

atgggaatgatgccaaaatttgccagcccggc	CRISPR spacer
ttgggaatgaggccaaaatttgcctgcccaag	Protospacer
 ********* ************* ****..

20. spacer 3.28|483603|31|NZ_CP053286|CRISPRCasFinder,CRT matches to NC_013860 (Azospirillum sp. B510 plasmid pAB510f, complete sequence) position: , mismatch: 6, identity: 0.806

ggtcgacggcaagcaggtctcggcatttacc---	CRISPR spacer
ggtcgacggcaagccggcctcgg---tcaccgtg	Protospacer
************** **.*****   *.***

21. spacer 1.1|468644|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040937 (Hymenobacter sp. DG01 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.781

gattcgaacttgcgtccgccggcctcgtcgat	CRISPR spacer
tgctcgaacttgcggccgccggcctcattgtt	Protospacer
 ..*********** ***********.*.* *

22. spacer 2.9|473000|33|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021525 (Acetobacter ascendens strain SRCM101447 plasmid pAP1447-1) position: , mismatch: 7, identity: 0.788

ccagtcgtgccagcagttgtagccgttgttcca	CRISPR spacer
acacacatgccagcagatgtagccgctgttcta	Protospacer
 **  *.********* ********.*****.*

23. spacer 2.9|473000|33|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NC_017130 (Acetobacter pasteurianus IFO 3283-26 plasmid pAPA26-013, complete sequence) position: , mismatch: 7, identity: 0.788

ccagtcgtgccagcagttgtagccgttgttcca	CRISPR spacer
acacacatgccagcagatgtagccgctgttcta	Protospacer
 **  *.********* ********.*****.*

24. spacer 2.9|473000|33|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NC_017134 (Acetobacter pasteurianus IFO 3283-32 plasmid pAPA32-012, complete sequence) position: , mismatch: 7, identity: 0.788

ccagtcgtgccagcagttgtagccgttgttcca	CRISPR spacer
acacacatgccagcagatgtagccgctgttcta	Protospacer
 **  *.********* ********.*****.*

25. spacer 2.9|473000|33|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NC_017101 (Acetobacter pasteurianus IFO 3283-03 plasmid pAPA03-010, complete sequence) position: , mismatch: 7, identity: 0.788

ccagtcgtgccagcagttgtagccgttgttcca	CRISPR spacer
acacacatgccagcagatgtagccgctgttcta	Protospacer
 **  *.********* ********.*****.*

26. spacer 2.9|473000|33|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NC_013210 (Acetobacter pasteurianus IFO 3283-01 plasmid pAPA01-011, complete sequence) position: , mismatch: 7, identity: 0.788

ccagtcgtgccagcagttgtagccgttgttcca	CRISPR spacer
acacacatgccagcagatgtagccgctgttcta	Protospacer
 **  *.********* ********.*****.*

27. spacer 2.9|473000|33|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NC_017136 (Acetobacter pasteurianus IFO 3283-12 plasmid pAPA12-014, complete sequence) position: , mismatch: 7, identity: 0.788

ccagtcgtgccagcagttgtagccgttgttcca	CRISPR spacer
acacacatgccagcagatgtagccgctgttcta	Protospacer
 **  *.********* ********.*****.*

28. spacer 3.3|482096|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021815 (Sinorhizobium meliloti strain M270 plasmid accessoryA, complete sequence) position: , mismatch: 7, identity: 0.781

atcggcagcgcggaaggtggcgacaaaatcct	CRISPR spacer
atcggcggcgtggaaggtggcgaatacattcg	Protospacer
******.***.************  * **.*

29. spacer 3.11|482584|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NC_008043 (Ruegeria sp. TM1040 megaplasmid, complete sequence) position: , mismatch: 7, identity: 0.781

atgagcacgttcacctcgggcatgg---cgtccgg	CRISPR spacer
tcgagcccgttcacctcgggcatggacatgtc---	Protospacer
 .**** ******************   .***

30. spacer 3.11|482584|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025432 (Paracoccus zhejiangensis strain J6 plasmid pPZ02, complete sequence) position: , mismatch: 7, identity: 0.781

atgagcacgttcacctcgggcatggcgtccgg	CRISPR spacer
aacacctcgttcacctcgggcgtgccgtccag	Protospacer
*  * * **************.** *****.*

31. spacer 3.15|482824|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042265 (Litoreibacter sp. LN3S51 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.781

agccgctttccggctggcaggtgctg-gcgcag	CRISPR spacer
tgccgctttccagatggcaggtgccgcacgcg-	Protospacer
 **********.* **********.* .***.

32. spacer 3.16|482884|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NC_041880 (Pseudomonas phage phiPMW, complete genome) position: , mismatch: 7, identity: 0.781

gtccacgg--tcagcttgaagtaagtacactcgg	CRISPR spacer
--ccatgacttcagcttgaagcgagtacactcgt	Protospacer
  ***.*.  ***********..**********

33. spacer 3.28|483603|31|NZ_CP053286|CRISPRCasFinder,CRT matches to NZ_CP024310 (Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence) position: , mismatch: 7, identity: 0.774

ggtcgacggcaagcaggtctc-ggcatttacc	CRISPR spacer
ggtcgacggcaaggaggtcgcgggcaagcgc-	Protospacer
************* ***** * ****  ..*

34. spacer 3.28|483603|31|NZ_CP053286|CRISPRCasFinder,CRT matches to NZ_CP023064 (Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence) position: , mismatch: 7, identity: 0.774

ggtcgacggcaagcaggtctc-ggcatttacc	CRISPR spacer
ggtcgacggcaaggaggtcgcgggcaagcgc-	Protospacer
************* ***** * ****  ..*

35. spacer 3.28|483603|31|NZ_CP053286|CRISPRCasFinder,CRT matches to MK433261 (Gordonia phage Msay19, complete genome) position: , mismatch: 7, identity: 0.774

ggtcgacggcaagcaggtctcggcatttacc	CRISPR spacer
gttcaacggcaagcaggtcacggcagtcaag	Protospacer
* **.************** ***** *.*

36. spacer 3.28|483603|31|NZ_CP053286|CRISPRCasFinder,CRT matches to MG757155 (Gordonia phage Boneham, complete genome) position: , mismatch: 7, identity: 0.774

ggtcgacggcaagcaggtctcggcatttacc	CRISPR spacer
gttcaacggcaagcaggtcacggcagtcaag	Protospacer
* **.************** ***** *.*

37. spacer 3.28|483603|31|NZ_CP053286|CRISPRCasFinder,CRT matches to NC_048820 (Gordonia phage Jellybones, complete genome) position: , mismatch: 7, identity: 0.774

ggtcgacggcaagcaggtctcggcatttacc	CRISPR spacer
gttcaacggcaagcaggtcacggcagtcaag	Protospacer
* **.************** ***** *.*

38. spacer 3.28|483603|31|NZ_CP053286|CRISPRCasFinder,CRT matches to MK433263 (Gordonia phage FelixAlejandro, complete genome) position: , mismatch: 7, identity: 0.774

ggtcgacggcaagcaggtctcggcatttacc	CRISPR spacer
gttcaacggcaagcaggtcacggcagtcaag	Protospacer
* **.************** ***** *.*

39. spacer 3.28|483603|31|NZ_CP053286|CRISPRCasFinder,CRT matches to MG757152 (Gordonia phage Adgers, complete genome) position: , mismatch: 7, identity: 0.774

ggtcgacggcaagcaggtctcggcatttacc	CRISPR spacer
gttcaacggcaagcaggtcacggcagtcaag	Protospacer
* **.************** ***** *.*

40. spacer 3.28|483603|31|NZ_CP053286|CRISPRCasFinder,CRT matches to MK359302 (Gordonia phage Sombrero, complete genome) position: , mismatch: 7, identity: 0.774

ggtcgacggcaagcaggtctcggcatttacc	CRISPR spacer
gttcaacggcaagcaggtcacggcagtcaag	Protospacer
* **.************** ***** *.*

41. spacer 3.28|483603|31|NZ_CP053286|CRISPRCasFinder,CRT matches to NC_047892 (Gordonia phage BirksAndSocks, complete genome) position: , mismatch: 7, identity: 0.774

ggtcgacggcaagcaggtctcggcatttacc	CRISPR spacer
gttcaacggcaagcaggtcacggcagtcaag	Protospacer
* **.************** ***** *.*

42. spacer 3.28|483603|31|NZ_CP053286|CRISPRCasFinder,CRT matches to MK433267 (Gordonia phage Butterball, complete genome) position: , mismatch: 7, identity: 0.774

ggtcgacggcaagcaggtctcggcatttacc	CRISPR spacer
gttcaacggcaagcaggtcacggcagtcaag	Protospacer
* **.************** ***** *.*

43. spacer 1.3|468764|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014810 (Methylorubrum populi strain P-1M plasmid pMPPM01, complete sequence) position: , mismatch: 8, identity: 0.75

aagtcgcgctactgcgcaagcacctcgaagac	CRISPR spacer
acatggcgctgctgcgcgagcacctcgacgga	Protospacer
* .* *****.******.********** *.

44. spacer 3.12|482644|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049244 (Rhizobium pseudoryzae strain DSM 19479 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

ttcttcag----ctcaactttcgccgcggcgacttt	CRISPR spacer
----tcaaggccgtcaactttcgcggcggcggcttt	Protospacer
    ***.     *********** ******.****

45. spacer 3.15|482824|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 8, identity: 0.75

agccgctttccggctggcaggtgctggcgcag	CRISPR spacer
agccgctttccggctggcaagggcacacagtg	Protospacer
*******************.* **  .*.  *

46. spacer 3.15|482824|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012632 (Escherichia coli strain SF-173 plasmid pSF-173-1, complete sequence) position: , mismatch: 8, identity: 0.75

agccgctttccggctggcaggtgctggcgcag	CRISPR spacer
ggcccgactccgactggcagctgctggcgcac	Protospacer
.***   .****.******* **********

47. spacer 3.15|482824|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012498 (Escherichia coli strain 06-00048 plasmid pCFSAN004178P_02, complete sequence) position: , mismatch: 8, identity: 0.75

agccgctttccggctggcaggtgctggcgcag	CRISPR spacer
ggcccgactccgactggcagctgctggcgcac	Protospacer
.***   .****.******* **********

48. spacer 3.15|482824|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030197 (Salmonella enterica strain SA20051401 plasmid pSA20051401.1, complete sequence) position: , mismatch: 8, identity: 0.75

agccgctttccggctggcaggtgctggcgcag	CRISPR spacer
ggcccgactccgactggcagctgctggcgcac	Protospacer
.***   .****.******* **********

49. spacer 3.15|482824|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027237 (Actinomyces sp. oral taxon 897 strain F0631 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

agccgctttccggctggcaggtgctggcgcag	CRISPR spacer
accagggagccagctggcaggtgctcgcgcag	Protospacer
* * *    **.************* ******

50. spacer 3.15|482824|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023389 (Escherichia coli strain 1105 plasmid p74, complete sequence) position: , mismatch: 8, identity: 0.75

agccgctttccggctggcaggtgctggcgcag	CRISPR spacer
ggcccgactccgactggcagctgctggcgcac	Protospacer
.***   .****.******* **********

51. spacer 3.15|482824|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030177 (Salmonella enterica subsp. enterica serovar Milwaukee str. SA19950795 plasmid pIncFII.2, complete sequence) position: , mismatch: 8, identity: 0.75

agccgctttccggctggcaggtgctggcgcag	CRISPR spacer
ggcccgactccgactggcagctgctggcgcac	Protospacer
.***   .****.******* **********

52. spacer 3.15|482824|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to CP052261 (Klebsiella pneumoniae strain E16KP0290 plasmid pE16KP0290-3, complete sequence) position: , mismatch: 8, identity: 0.75

agccgctttccggctggcaggtgctggcgcag	CRISPR spacer
ggcccgactccgactggcagctgctggcgcac	Protospacer
.***   .****.******* **********

53. spacer 3.20|483124|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to JQ182730 (Enterobacteria phage mEp237, complete genome) position: , mismatch: 8, identity: 0.75

taaatcggagcaggttgcgcgttgtggaaact	CRISPR spacer
gaaggacaagcaggttgcgcgttgtggcaacg	Protospacer
 **.   .******************* ***

54. spacer 3.20|483124|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022288 (Bacillus subtilis strain SX01705 plasmid pSX01705-1, complete sequence) position: , mismatch: 8, identity: 0.75

taaatcggagcaggttgcgcgttgtggaaact	CRISPR spacer
aaaggctaagcaggttgagcgctgtggaaacg	Protospacer
 **. * .********* ***.*********

55. spacer 3.20|483124|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035229 (Bacillus licheniformis strain SRCM103529 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

taaatcggagcaggttgcgcgttgtggaaact	CRISPR spacer
aaaggctaagcaggttgagcgctgtggaaacg	Protospacer
 **. * .********* ***.*********

56. spacer 3.21|483184|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to CP042595 (Streptomyces albogriseolus strain LBX-2 plasmid pSALBX2, complete sequence) position: , mismatch: 8, identity: 0.75

cggttctctccctgccggtccagctcgtcctc	CRISPR spacer
tcgccggcgccctgccggtccagctcgtcgtc	Protospacer
. *..  * ******************** **

57. spacer 3.22|483244|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NC_014310 (Ralstonia solanacearum PSI07 plasmid mpPSI07, complete sequence) position: , mismatch: 8, identity: 0.75

tgggggcggggaacgcgcaaggccaggaaccc	CRISPR spacer
cggtcgcggtgaccgcgcaaggccaggacggc	Protospacer
.**  **** ** ***************   *

58. spacer 3.24|483364|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to MT843275 (Serratia phage vB_SspM_BZS1, complete genome) position: , mismatch: 8, identity: 0.75

tggctaaccaggaggcgcagccggtggcatgg	CRISPR spacer
cggctaaccgggaggcgcagccggtgtatcaa	Protospacer
.********.****************   ...

59. spacer 3.24|483364|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NC_048758 (Serratia phage Parlo, complete genome) position: , mismatch: 8, identity: 0.75

tggctaaccaggaggcgcagccggtggcatgg	CRISPR spacer
tggctaaccgggaggcacagccggtgtatcaa	Protospacer
*********.******.*********   ...

60. spacer 3.24|483364|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 8, identity: 0.75

tggctaaccaggaggcgcagccggtggcatgg	CRISPR spacer
cgaagaaccaggaggcgctggcggtggcacgc	Protospacer
.*.  ************* * ********.*

61. spacer 3.24|483364|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.75

tggctaaccaggaggcgcagccggtggcatgg	CRISPR spacer
tgttcaaccaggaggcgcagccgtcggctacg	Protospacer
** ..****************** .***   *

62. spacer 3.24|483364|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007794 (Azospirillum brasilense strain Az39 plasmid AbAZ39_p1, complete sequence) position: , mismatch: 8, identity: 0.75

tggctaaccaggaggcgcagccggtggcatgg	CRISPR spacer
tgttcaaccaggaggcgcagccgtcggctacg	Protospacer
** ..****************** .***   *

63. spacer 3.28|483603|31|NZ_CP053286|CRISPRCasFinder,CRT matches to NC_007974 (Cupriavidus metallidurans CH34 megaplasmid, complete sequence) position: , mismatch: 8, identity: 0.742

ggtcgacggcaagcaggtctcggcatttacc	CRISPR spacer
cgtcgacgccaagcaggtcgcggcgcgtgcg	Protospacer
 ******* ********** ****.. *.*

64. spacer 3.28|483603|31|NZ_CP053286|CRISPRCasFinder,CRT matches to NZ_CP046333 (Cupriavidus metallidurans strain FDAARGOS_675 plasmid unnamed3) position: , mismatch: 8, identity: 0.742

ggtcgacggcaagcaggtctcggcatttacc	CRISPR spacer
cgtcgacgccaagcaggtcgcggcgcgtgcg	Protospacer
 ******* ********** ****.. *.*

65. spacer 2.1|472520|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NC_016654 (Rhodococcus phage REQ3, complete genome) position: , mismatch: 9, identity: 0.719

tggaacaagaccgaggccgacgggcgttatgt	CRISPR spacer
aagatcaagaccgaggccgacgagcgtctcac	Protospacer
 .** *****************.****. ...

66. spacer 2.1|472520|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NC_016585 (Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence) position: , mismatch: 9, identity: 0.719

tggaacaagaccgaggccgacgggcgttatgt	CRISPR spacer
accatccagaccggcgccgacgggcgttattc	Protospacer
   * * ******. *************** .

67. spacer 2.2|472580|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017672 (Providencia rettgeri strain RB151 plasmid pRB151-NDM, complete sequence) position: , mismatch: 9, identity: 0.719

aggggctgattacaacgctgaaaaagcgtaag	CRISPR spacer
aaaatttcattacaacgctgaataagagtaat	Protospacer
*... .* ************** *** ****

68. spacer 3.3|482096|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024314 (Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence) position: , mismatch: 9, identity: 0.719

atcggcagcgcggaaggtggcgacaaaatcct	CRISPR spacer
atcggcagcccggaaggcggcgatcaagagac	Protospacer
********* *******.*****. **.   .

69. spacer 3.10|482524|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010826 (Thermus aquaticus Y51MC23 plasmid pTA78, complete sequence) position: , mismatch: 9, identity: 0.719

atgaacggatattttcgtgcataggcattatg	CRISPR spacer
gcatacggatagtttagtgcataggcacttgg	Protospacer
... ******* *** ***********.*  *

70. spacer 3.19|483064|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to FN436269 (Acaryochloris phage A-HIS2, complete genome) position: , mismatch: 9, identity: 0.719

agtgaaaacaacactcaggcctatattgatgc	CRISPR spacer
gactcagataaccctcaggcccatattgatgc	Protospacer
...  *.*.*** ********.**********

71. spacer 3.21|483184|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to MK977695 (Gordonia phage Pupper, complete genome) position: , mismatch: 9, identity: 0.719

cggttctctccctgccggtccagctcgtcctc	CRISPR spacer
gagccctctgcctgccggtcctgctcgtcgaa	Protospacer
 .*..**** *********** *******

72. spacer 3.21|483184|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046163 (Vibrio sp. THAF191c plasmid pTHAF191c_b, complete sequence) position: , mismatch: 9, identity: 0.719

cggttctctccctgccggtccagctcgtcctc	CRISPR spacer
gcgccttctcccagccagtccagctcgtcatt	Protospacer
  *...****** ***.************ *.

73. spacer 3.21|483184|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015867 (Streptomyces parvulus strain 2297 plasmid pSPA1, complete sequence) position: , mismatch: 9, identity: 0.719

cggttctctccctgccggtccagctcgtcctc	CRISPR spacer
tcgccggcgccctgccggtcgagttcgtcctc	Protospacer
. *..  * *********** **.********

74. spacer 3.21|483184|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046066 (Vibrio sp. THAF191d plasmid pTHAF191d_b, complete sequence) position: , mismatch: 9, identity: 0.719

cggttctctccctgccggtccagctcgtcctc	CRISPR spacer
gcgccttctcccagccagtccagctcgtcatt	Protospacer
  *...****** ***.************ *.

75. spacer 3.21|483184|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR699555 (Paraburkholderia sp. Msb3 isolate PDMSB31 plasmid pI) position: , mismatch: 9, identity: 0.719

cggttctctccctgccggtccagctcgtcctc	CRISPR spacer
tgccgcgctccctgccggaccagttcgtccag	Protospacer
.* . * *********** ****.******

76. spacer 3.21|483184|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045356 (Vibrio sp. THAF64 plasmid pTHAF64_a, complete sequence) position: , mismatch: 9, identity: 0.719

cggttctctccctgccggtccagctcgtcctc	CRISPR spacer
gcgccttctcccagccagtccagctcgtcatt	Protospacer
  *...****** ***.************ *.

77. spacer 3.28|483603|31|NZ_CP053286|CRISPRCasFinder,CRT matches to NZ_CP022991 (Paraburkholderia aromaticivorans strain BN5 plasmid pBN1, complete sequence) position: , mismatch: 9, identity: 0.71

ggtcgacggcaagcaggtctcggcatttacc	CRISPR spacer
cgtcgacggcacgccggtctcggcacgcgag	Protospacer
 ********** ** **********. ..

78. spacer 3.28|483603|31|NZ_CP053286|CRISPRCasFinder,CRT matches to NZ_CP021071 (Mesorhizobium sp. WSM1497 plasmid pWSM1497, complete sequence) position: , mismatch: 9, identity: 0.71

ggtcgacggcaagcaggtctcggcatttacc	CRISPR spacer
ggtcgacggcaagcgggtctcgcaggccggc	Protospacer
**************.*******  . ... *

79. spacer 3.28|483603|31|NZ_CP053286|CRISPRCasFinder,CRT matches to NZ_CP021071 (Mesorhizobium sp. WSM1497 plasmid pWSM1497, complete sequence) position: , mismatch: 9, identity: 0.71

ggtcgacggcaagcaggtctcggcatttacc	CRISPR spacer
ggtcgacggcaagcgggtctcgcaggccggc	Protospacer
**************.*******  . ... *

80. spacer 3.28|483603|31|NZ_CP053286|CRISPRCasFinder,CRT matches to NZ_CP015322 (Mesorhizobium amorphae CCNWGS0123 plasmid pM0123d, complete sequence) position: , mismatch: 9, identity: 0.71

ggtcgacggcaagcaggtctcggcatttacc	CRISPR spacer
catcgacggcaagcaggtggcggcaactgtt	Protospacer
 .****************  ***** .*...

81. spacer 1.1|468644|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 10, identity: 0.688

gattcgaacttgcgtccgccggcctcgtcgat	CRISPR spacer
tgcatgaacatgcgtccgcccgcctcgtgcac	Protospacer
 .. .**** ********** *******  *.

82. spacer 1.3|468764|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_HG938354 (Neorhizobium galegae bv. orientalis str. HAMBI 540 plasmid pHAMBI540a, complete sequence) position: , mismatch: 10, identity: 0.688

aagtcgcgctactgcgcaagcacctcgaagac	CRISPR spacer
gccaggcgctgctgcgcaagcagctcgactat	Protospacer
.    *****.*********** *****  *.

83. spacer 2.4|472700|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013482 (Pandoraea apista strain DSM 16535 plasmid pPA35, complete sequence) position: , mismatch: 10, identity: 0.688

ttgcgttccctttccgcctggcgattacgtgc	CRISPR spacer
ccgttcgaccttgccgcctggcgattgcgtgg	Protospacer
..*. .  **** *************.****

84. spacer 3.3|482096|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007517 (Rubrobacter radiotolerans strain RSPS-4 plasmid 3, complete sequence) position: , mismatch: 10, identity: 0.688

atcggcagcgcggaaggtggcgacaaaatcct	CRISPR spacer
ggcggcagcgcggacggcggcgacaaggcttc	Protospacer
. ************ **.********......

85. spacer 3.3|482096|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022775 (Ralstonia solanacearum strain T12 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

atcggcagcgcggaaggtggcgacaaaatcct	CRISPR spacer
atcggcagcggggaagctggcgaaactgctgc	Protospacer
********** ***** ****** *  ... .

86. spacer 3.3|482096|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022764 (Ralstonia solanacearum strain T82 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

atcggcagcgcggaaggtggcgacaaaatcct	CRISPR spacer
atcggcagcggggaagctggcgaaactgctgc	Protospacer
********** ***** ****** *  ... .

87. spacer 3.3|482096|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022797 (Ralstonia solanacearum strain SL2312 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

atcggcagcgcggaaggtggcgacaaaatcct	CRISPR spacer
atcggcagcggggaagctggcgaaactgctgc	Protospacer
********** ***** ****** *  ... .

88. spacer 3.3|482096|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022758 (Ralstonia solanacearum strain T101 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

atcggcagcgcggaaggtggcgacaaaatcct	CRISPR spacer
atcggcagcggggaagctggcgaaactgctgc	Protospacer
********** ***** ****** *  ... .

89. spacer 3.4|482156|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029446 (Serratia marcescens strain CAV1761 plasmid pKPC_CAV1761, complete sequence) position: , mismatch: 10, identity: 0.688

gcactggcgaaagcgttgatcgttgatttcga	CRISPR spacer
tcactggcgaatgcgttaatcgtttccagtgc	Protospacer
 ********** *****.******  .  .*

90. spacer 3.4|482156|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029429 (Klebsiella quasipneumoniae strain CAV2018 plasmid pKPC_CAV2018-63, complete sequence) position: , mismatch: 10, identity: 0.688

gcactggcgaaagcgttgatcgttgatttcga	CRISPR spacer
tcactggcgaatgcgttaatcgtttccagtgc	Protospacer
 ********** *****.******  .  .*

91. spacer 3.4|482156|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011639 (Serratia marcescens strain CAV1492 plasmid pKPC_CAV1492, complete sequence) position: , mismatch: 10, identity: 0.688

gcactggcgaaagcgttgatcgttgatttcga	CRISPR spacer
tcactggcgaatgcgttaatcgtttccagtgc	Protospacer
 ********** *****.******  .  .*

92. spacer 3.4|482156|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NC_019899 (Klebsiella pneumoniae strain BK31567 plasmid pBK31567, complete sequence) position: , mismatch: 10, identity: 0.688

gcactggcgaaagcgttgatcgttgatttcga	CRISPR spacer
tcactggcgaatgcgttaatcgtttccagtgc	Protospacer
 ********** *****.******  .  .*

93. spacer 3.4|482156|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029439 (Klebsiella quasipneumoniae strain CAV1947 plasmid pKPC_CAV1947-56, complete sequence) position: , mismatch: 10, identity: 0.688

gcactggcgaaagcgttgatcgttgatttcga	CRISPR spacer
tcactggcgaatgcgttaatcgtttccagtgc	Protospacer
 ********** *****.******  .  .*

94. spacer 3.9|482464|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023302 (Lactobacillus plantarum strain pc-26 plasmid p.pc-2601, complete sequence) position: , mismatch: 10, identity: 0.688

tgctgaattgtctgaaaatggataccagaaac	CRISPR spacer
ctttgaattgtctgtaaatgaatacctagcaa	Protospacer
. .*********** *****.***** .. *

95. spacer 3.11|482584|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KM017071 (Sphingomonas sp. JE1 plasmid pJE1, complete sequence) position: , mismatch: 10, identity: 0.688

atgagcacgttcacctcgggcatggcgtccgg	CRISPR spacer
gaagagacgttcaactcgcgcatggcgtcggt	Protospacer
. ... ******* **** ********** *

96. spacer 3.16|482884|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031358 (Erythrobacter aureus strain YH-07 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

gtccacggtcagcttgaagtaagtacactcgg	CRISPR spacer
caatctggtcagcttgaagtaagtggactggt	Protospacer
   . .******************. *** *

97. spacer 3.20|483124|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015322 (Mesorhizobium amorphae CCNWGS0123 plasmid pM0123d, complete sequence) position: , mismatch: 10, identity: 0.688

taaatcggagcaggttgcgcgttgtggaaact	CRISPR spacer
cgctacggagcagcttgcccgttgtggaacgc	Protospacer
..   ******** **** **********  .

98. spacer 3.21|483184|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to KY365739 (Streptomyces phage BabyGotBac, complete genome) position: , mismatch: 10, identity: 0.688

cggttctctccctgccggtccagctcgtcctc	CRISPR spacer
tgcggtcctgcctgccggtccagctggtccgg	Protospacer
.*   ..** *************** ****

99. spacer 3.21|483184|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to MH178382 (Streptomyces phage Salete, complete genome) position: , mismatch: 10, identity: 0.688

cggttctctccctgccggtccagctcgtcctc	CRISPR spacer
tgcggtcctgcctgccggtccagctggtccgg	Protospacer
.*   ..** *************** ****

100. spacer 3.21|483184|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to KU189325 (Streptomyces phage Maih, complete genome) position: , mismatch: 10, identity: 0.688

cggttctctccctgccggtccagctcgtcctc	CRISPR spacer
tgcggtcctgcctgccggtccagctggtccgg	Protospacer
.*   ..** *************** ****

101. spacer 3.21|483184|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to MH178381 (Streptomyces phage BayC, complete genome) position: , mismatch: 10, identity: 0.688

cggttctctccctgccggtccagctcgtcctc	CRISPR spacer
tgcggtcctgcctgccggtccagctggtccgg	Protospacer
.*   ..** *************** ****

102. spacer 3.21|483184|32|NZ_CP053286|PILER-CR,CRISPRCasFinder,CRT matches to KP876466 (Streptomyces phage TP1604, complete genome) position: , mismatch: 10, identity: 0.688

cggttctctccctgccggtccagctcgtcctc	CRISPR spacer
tgcggtcctgcctgccggtccagctggtccgg	Protospacer
.*   ..** *************** ****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

849761 : 862326

uncultured_Mediterranean_phage(22.22%)

integrase,transposase

attL 854082:854095|attR 859623:859636

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_033631815.1\|849761_850523_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	3.3e-54	46.7
WP_044029655.1\|850516_851143_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.7e-33	48.8
WP_015376692.1\|851468_852467_+	murein hydrolase activator NlpD	D7RWE0	Brochothrix_phage	8.0e-08	38.6
WP_004932578.1\|852521_853520_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	1.2e-32	37.6
WP_171402988.1\|853599_856161_-	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.5e-26	19.9
854082:854095	attL	NA	NA	NA	NA
WP_171402989.1\|856320_857772_+\|integrase	integrase	A0A0R6PGY7	Moraxella_phage	2.1e-20	26.6
WP_171402699.1\|857785_857938_+	hypothetical protein	NA	NA	NA	NA
WP_171402891.1\|858007_859036_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.4e-68	43.7
WP_171402890.1\|859032_859824_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	2.1e-75	55.8
859623:859636	attR	NA	NA	NA	NA
WP_171402990.1\|860496_862326_-	NACHT domain-containing protein	X5JAK5	Clostridium_phage	4.5e-33	25.2

DBSCAN-SWA_2

963974 : 970604

Streptococcus_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_015376738.1\|963974_965078_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	2.6e-60	43.4
WP_171403028.1\|965087_966341_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	8.0e-98	48.4
WP_016929262.1\|967477_967711_+	hypothetical protein	A0A192Y6D5	Salmonella_phage	4.9e-17	55.8
WP_171403029.1\|967730_968168_-	hypothetical protein	NA	NA	NA	NA
WP_171403030.1\|968220_969813_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.9e-185	65.4
WP_171403031.1\|969843_970194_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.1e-40	66.4
WP_171403032.1\|970190_970604_-\|transposase	transposase	Q6H9S5	Enterobacteria_phage	1.1e-32	78.6

DBSCAN-SWA_3

1394739 : 1444313

Enterobacteria_phage(21.62%)

head,portal,tail,capsid,terminase,tRNA,holin,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_164095272.1\|1394739_1395672_+\|tRNA	tRNA dihydrouridine(16) synthase DusC	NA	NA	NA	NA
WP_033642249.1\|1395713_1395980_-	hypothetical protein	NA	NA	NA	NA
WP_015377028.1\|1396226_1397273_-	ferric ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.4e-31	36.3
WP_171403172.1\|1397284_1399363_-	iron ABC transporter permease	NA	NA	NA	NA
WP_015377030.1\|1399430_1400462_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_171403173.1\|1400458_1401763_-	MFS transporter family glucose-6-phosphate receptor UhpC	NA	NA	NA	NA
WP_171403174.1\|1401847_1403389_-	MASE1 domain-containing protein	NA	NA	NA	NA
WP_171403175.1\|1403388_1404018_-	response regulator transcription factor	NA	NA	NA	NA
WP_171403176.1\|1406192_1406438_-	excisionase family protein	A0A286S2A4	Klebsiella_phage	1.1e-27	72.4
WP_171403177.1\|1406636_1407020_-	hypothetical protein	NA	NA	NA	NA
WP_171403178.1\|1408438_1408780_-	hypothetical protein	NA	NA	NA	NA
WP_171403179.1\|1408789_1409098_-	hypothetical protein	NA	NA	NA	NA
WP_171403180.1\|1409100_1409481_-	hypothetical protein	NA	NA	NA	NA
WP_128868794.1\|1409480_1409666_-	hypothetical protein	NA	NA	NA	NA
WP_171403181.1\|1409684_1409879_-	hypothetical protein	NA	NA	NA	NA
WP_171403182.1\|1409875_1410787_-	phosphoadenosine phosphosulfate reductase family protein	S4TN48	Salmonella_phage	8.6e-142	76.6
WP_171403183.1\|1410786_1411407_-	hypothetical protein	NA	NA	NA	NA
WP_171403184.1\|1411403_1411931_-	hypothetical protein	NA	NA	NA	NA
WP_171403185.1\|1411914_1412754_-	chromosome partitioning protein ParB	K7PKM7	Enterobacterial_phage	1.2e-73	55.6
WP_154582428.1\|1412757_1412901_-	hypothetical protein	NA	NA	NA	NA
WP_171403186.1\|1413524_1413719_-	hypothetical protein	NA	NA	NA	NA
WP_171403187.1\|1413736_1413895_-	DUF1391 family protein	M4QQ57	Salicola_phage	6.5e-05	50.0
WP_151429266.1\|1414246_1414645_-	helix-turn-helix domain-containing protein	Q37946	Enterobacteria_phage	1.3e-20	57.5
WP_171403188.1\|1414762_1414999_+	helix-turn-helix transcriptional regulator	A0A0M4RTV8	Salmonella_phage	2.5e-21	71.2
WP_171403189.1\|1414991_1415303_+	hypothetical protein	NA	NA	NA	NA
WP_171403190.1\|1415323_1415896_+	hypothetical protein	Q7Y5X0	Haemophilus_phage	3.2e-17	46.3
WP_171404671.1\|1416221_1416377_+	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_171403191.1\|1416373_1416757_+	HNH endonuclease	G8EYC9	Synechococcus_phage	9.6e-10	47.6
WP_171403192.1\|1416753_1417797_+	conserved phage C-terminal domain-containing protein	K4NZ18	Pseudomonas_phage	2.7e-30	38.5
WP_171403193.1\|1417793_1418201_+	hypothetical protein	A0A2H4FUS3	Salmonella_phage	9.8e-05	49.2
WP_171403194.1\|1418197_1419034_+	antitermination protein	K7PKS8	Enterobacteria_phage	4.5e-52	40.5
WP_171403195.1\|1419442_1419931_+	ImmA/IrrE family metallo-endopeptidase	A0A142KB62	Gordonia_phage	1.9e-26	42.0
WP_171403196.1\|1421054_1421549_+	HNH endonuclease	A0A1W6DY33	Salmonella_phage	1.4e-42	54.9
WP_081274826.1\|1422295_1422475_-	hypothetical protein	A0A192Y6A8	Salmonella_phage	3.7e-17	66.1
WP_171403197.1\|1422608_1422965_+\|holin	phage holin family protein	NA	NA	NA	NA
WP_171403198.1\|1422954_1423350_+	M15 family metallopeptidase	E7C9S9	Salmonella_phage	3.8e-38	61.8
WP_154871518.1\|1423346_1423895_+	hypothetical protein	H9C185	Pectobacterium_phage	1.5e-24	43.8
WP_171404672.1\|1424266_1424461_+	hypothetical protein	K7PHC3	Enterobacterial_phage	4.1e-17	73.8
WP_171403199.1\|1424584_1424866_+	hypothetical protein	G8C7W3	Escherichia_phage	2.1e-38	84.9
WP_171403200.1\|1424945_1425242_+	hypothetical protein	NA	NA	NA	NA
WP_171403201.1\|1425306_1425636_+	HNH endonuclease	A0A2I6PIG1	Escherichia_phage	3.5e-37	64.9
WP_047574388.1\|1425760_1426228_+\|terminase	phage terminase small subunit P27 family	Q9B019	Phage_GMSE-1	3.1e-47	60.8
WP_171403202.1\|1426178_1427924_+\|terminase	terminase large subunit	M4QNU0	Tetraselmis_viridis_virus	2.5e-137	43.0
WP_049301604.1\|1427923_1429228_+\|portal	phage portal protein	K7PJU5	Enterobacteria_phage	1.3e-207	80.9
WP_033655091.1\|1429240_1430092_+\|protease	Clp protease ClpP	K7PH05	Enterobacteria_phage	8.4e-123	79.8
WP_171403203.1\|1430107_1431328_+\|capsid	phage major capsid protein	K7PM57	Enterobacteria_phage	1.4e-179	80.0
WP_171403204.1\|1431714_1432041_+\|head,tail	phage gp6-like head-tail connector protein	K7PKT4	Enterobacteria_phage	8.9e-33	56.5
WP_171403205.1\|1432037_1432376_+\|head	phage head closure protein	Q7Y406	Yersinia_phage	3.4e-19	50.0
WP_076740629.1\|1432362_1432752_+	hypothetical protein	Q6UAX2	Klebsiella_phage	6.9e-32	51.9
WP_076740630.1\|1432748_1433153_+	HK97 gp10 family phage protein	Q6UAX1	Klebsiella_phage	1.7e-41	67.4
WP_033655098.1\|1433187_1433643_+	hypothetical protein	Q7Y403	Yersinia_phage	8.0e-56	73.5
WP_075206170.1\|1433639_1433903_+	immunoglobulin domain-containing protein	Q7Y402	Yersinia_phage	1.1e-17	58.1
WP_049301618.1\|1433912_1434272_+	hypothetical protein	NA	NA	NA	NA
WP_171403206.1\|1434504_1437453_+\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	1.9e-44	28.4
WP_060559914.1\|1437452_1437791_+\|tail	phage tail protein	K7PKL8	Enterobacterial_phage	1.6e-32	55.5
WP_171404673.1\|1437800_1438553_+\|tail	phage minor tail protein L	K7PGX3	Enterobacteria_phage	2.0e-99	66.8
WP_047574432.1\|1438561_1439266_+	C40 family peptidase	K7PGR2	Enterobacteria_phage	6.1e-111	77.0
WP_150130715.1\|1439303_1439642_+	hypothetical protein	NA	NA	NA	NA
WP_171403207.1\|1439696_1440311_+\|tail	tail assembly protein	F1C572	Cronobacter_phage	1.9e-52	55.3
WP_171403208.1\|1440332_1440620_+	hypothetical protein	NA	NA	NA	NA
WP_171403209.1\|1440634_1440934_-	hypothetical protein	NA	NA	NA	NA
WP_171403210.1\|1441106_1444313_+	host specificity protein J	F1C571	Cronobacter_phage	0.0e+00	64.0

DBSCAN-SWA_4

2065722 : 2113597

Pectobacterium_phage(54.05%)

head,integrase,plate,terminase,holin

attL 2065621:2065644|attR 2114984:2115007

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2065621:2065644	attL	NA	NA	NA	NA
WP_171403419.1\|2065722_2066805_-\|integrase	phage integrase Arm DNA-binding domain-containing protein	A0A2H4IYC8	uncultured_Caudovirales_phage	5.3e-98	49.3
WP_171403420.1\|2066779_2067052_-	excisionase	A0A2H4J5E1	uncultured_Caudovirales_phage	3.4e-09	37.2
WP_060444327.1\|2067127_2067631_-	siphovirus Gp157 family protein	H9C156	Pectobacterium_phage	1.5e-34	50.9
WP_171403421.1\|2067627_2069754_-	hypothetical protein	H9C157	Pectobacterium_phage	1.6e-101	35.6
WP_171403422.1\|2069768_2070089_-	hypothetical protein	NA	NA	NA	NA
WP_171403423.1\|2070183_2070621_-	hypothetical protein	A0A2H4JG91	uncultured_Caudovirales_phage	1.9e-14	50.8
WP_171403424.1\|2070753_2071065_-	hypothetical protein	NA	NA	NA	NA
WP_116286447.1\|2071077_2071251_-	DUF1482 family protein	NA	NA	NA	NA
WP_171403425.1\|2071273_2071471_-	hypothetical protein	NA	NA	NA	NA
WP_171403426.1\|2071733_2072141_-	helix-turn-helix domain-containing protein	K7PHG0	Enterobacteria_phage	2.0e-05	29.4
WP_116286445.1\|2072244_2072481_+	helix-turn-helix domain-containing protein	H6WRX5	Salmonella_phage	1.6e-15	47.9
WP_033638075.1\|2072500_2072965_+	hypothetical protein	NA	NA	NA	NA
WP_072270890.1\|2072979_2073210_+	hypothetical protein	NA	NA	NA	NA
WP_154870763.1\|2074184_2074583_+	hypothetical protein	A0A2P1JUB0	Erwinia_phage	2.1e-39	56.5
WP_171403427.1\|2074598_2075024_+	hypothetical protein	NA	NA	NA	NA
WP_171403428.1\|2075034_2076645_+	DUF4942 domain-containing protein	A0A059VA49	Pseudomonas_phage	2.3e-169	56.8
WP_171403429.1\|2076648_2077476_+	chromosome partitioning protein ParB	K7PKM7	Enterobacterial_phage	5.2e-61	46.5
WP_171403430.1\|2077472_2077880_+	hypothetical protein	NA	NA	NA	NA
WP_171403431.1\|2077872_2078097_+	hypothetical protein	NA	NA	NA	NA
WP_171403432.1\|2078325_2079432_+	AAA family ATPase	R4TQL5	Phaeocystis_globosa_virus	4.1e-21	33.0
WP_171403433.1\|2079438_2081697_+	S8 family serine peptidase	NA	NA	NA	NA
WP_171403434.1\|2082187_2082784_+	DUF1367 family protein	H9C173	Pectobacterium_phage	6.8e-55	53.0
WP_033638080.1\|2082780_2083068_+	DUF1364 domain-containing protein	A0A220NRL6	Escherichia_phage	1.1e-31	67.4
WP_072022393.1\|2083064_2083430_+	antitermination protein	A0A0P0ZCW0	Stx2-converting_phage	2.7e-38	63.1
WP_171403435.1\|2084700_2085294_-	hypothetical protein	NA	NA	NA	NA
WP_072022394.1\|2085290_2086007_-	hypothetical protein	NA	NA	NA	NA
WP_171403436.1\|2086645_2087002_+\|holin	phage holin family protein	NA	NA	NA	NA
WP_171403437.1\|2086991_2087384_+	M15 family metallopeptidase	S4TRL9	Salmonella_phage	4.1e-48	71.7
WP_171403438.1\|2087380_2087767_+	DUF2570 family protein	NA	NA	NA	NA
WP_171403439.1\|2088055_2088397_+	hypothetical protein	NA	NA	NA	NA
WP_171403440.1\|2088785_2089295_+	ParB N-terminal domain-containing protein	A0A0R6PD10	Moraxella_phage	1.5e-34	48.4
WP_171403441.1\|2089291_2089906_+	protein Mom	C9E2P8	Enterococcus_phage	6.3e-64	61.1
WP_171403442.1\|2089908_2090166_+	hypothetical protein	NA	NA	NA	NA
WP_171403443.1\|2090173_2091169_+\|terminase	terminase small subunit	A0A0U2RXW9	Escherichia_phage	1.1e-60	49.8
WP_171403444.1\|2091168_2092809_+\|terminase	phage terminase large subunit	H9C191	Pectobacterium_phage	2.2e-268	80.3
WP_060559438.1\|2092811_2094212_+	DUF1073 domain-containing protein	H9C192	Pectobacterium_phage	2.5e-180	66.8
WP_171404694.1\|2094261_2095014_+\|head	phage head morphogenesis protein	H9C193	Pectobacterium_phage	5.2e-100	74.3
WP_171403445.1\|2095022_2096207_+	DUF2213 domain-containing protein	H9C194	Pectobacterium_phage	5.6e-101	65.3
WP_060559442.1\|2096885_2097824_+	DUF2184 domain-containing protein	H9C196	Pectobacterium_phage	3.0e-129	72.4
WP_060559444.1\|2097826_2098138_+	hypothetical protein	NA	NA	NA	NA
WP_060559446.1\|2098200_2098623_+	DUF4054 domain-containing protein	H9C198	Pectobacterium_phage	1.1e-46	68.1
WP_171403446.1\|2098619_2099087_+	hypothetical protein	H9C199	Pectobacterium_phage	1.8e-63	79.4
WP_060559450.1\|2099089_2099509_+	hypothetical protein	H9C1A0	Pectobacterium_phage	4.2e-43	61.3
WP_171403447.1\|2099505_2100042_+	hypothetical protein	H9C1A1	Pectobacterium_phage	1.0e-46	56.7
WP_171403448.1\|2100048_2101305_+	DUF3383 family protein	H9C1A2	Pectobacterium_phage	9.7e-136	58.1
WP_060559457.1\|2101312_2101717_+	hypothetical protein	H9C1A3	Pectobacterium_phage	1.8e-51	73.9
WP_171403449.1\|2101716_2101980_+	hypothetical protein	NA	NA	NA	NA
WP_171403450.1\|2101992_2102382_+	hypothetical protein	H9C1A4	Pectobacterium_phage	5.1e-35	55.0
WP_171403451.1\|2102635_2103187_+	hypothetical protein	NA	NA	NA	NA
WP_171403452.1\|2103266_2104937_+	glycoside hydrolase family 104 protein	H9C1A7	Pectobacterium_phage	2.5e-94	40.3
WP_060559466.1\|2105910_2106807_+	hypothetical protein	NA	NA	NA	NA
WP_171403453.1\|2106803_2107406_+	hypothetical protein	H9C1B1	Pectobacterium_phage	1.6e-56	52.3
WP_060559472.1\|2107421_2107769_+	hypothetical protein	H9C1B2	Pectobacterium_phage	7.8e-35	63.5
WP_171403454.1\|2107768_2108974_+\|plate	baseplate J/gp47 family protein	H9C1B3	Pectobacterium_phage	2.0e-130	58.2
WP_171403455.1\|2108966_2109827_+	DUF2612 domain-containing protein	H9C1B4	Pectobacterium_phage	2.5e-74	51.6
WP_171403456.1\|2109839_2110838_+	collagen-like protein	A0A1S6UAI5	Serratia_phage	1.3e-05	26.6
WP_171404695.1\|2111005_2111545_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_171403457.1\|2111614_2113597_+	Ig-like domain-containing protein	A0A0K1YA92	Cronobacter_phage	2.2e-49	39.2
2114984:2115007	attR	NA	NA	NA	NA

DBSCAN-SWA_5

2261417 : 2298621

Moraxella_phage(25.0%)

coat,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_021505510.1\|2261417_2262350_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_004931512.1\|2262370_2264791_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_171403513.1\|2264858_2265623_-	molecular chaperone	NA	NA	NA	NA
WP_171403514.1\|2265647_2266196_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_033633239.1\|2266201_2266705_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_015377665.1\|2266707_2267247_-\|coat	spore coat protein U domain-containing protein	NA	NA	NA	NA
WP_171403515.1\|2267521_2268958_-	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
WP_171403516.1\|2269060_2271691_-	MCE family protein	NA	NA	NA	NA
WP_171403517.1\|2271659_2272907_-	membrane integrity lipid transport subunit YebS	NA	NA	NA	NA
WP_088381512.1\|2273162_2273660_+	GAF domain-containing protein	NA	NA	NA	NA
WP_171403518.1\|2273756_2274467_+	RNA chaperone ProQ	NA	NA	NA	NA
WP_088381513.1\|2274486_2276535_+	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	1.5e-85	33.9
WP_171403519.1\|2276604_2277450_-	DMT family transporter	NA	NA	NA	NA
WP_171403520.1\|2277446_2278754_-	opine metallophore biosynthesis dehydrogenase	NA	NA	NA	NA
WP_171403521.1\|2278746_2279544_-	nicotianamine synthase	NA	NA	NA	NA
WP_171403522.1\|2279531_2280317_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	6.7e-10	28.4
WP_171403523.1\|2280313_2281354_-	iron ABC transporter permease	NA	NA	NA	NA
WP_121976571.1\|2281356_2282448_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004931482.1\|2282816_2283701_+\|protease	protease HtpX	NA	NA	NA	NA
WP_044031371.1\|2283985_2284693_+	hypothetical protein	NA	NA	NA	NA
WP_171403524.1\|2284772_2286167_-	MFS transporter	NA	NA	NA	NA
WP_015377677.1\|2286397_2287189_+	DNA-binding transcriptional regulator KdgR	NA	NA	NA	NA
WP_171403525.1\|2288033_2288897_-	2-aminoethylphosphonate ABC transporter permease subunit	NA	NA	NA	NA
WP_171403526.1\|2288898_2290035_-	2-aminoethylphosphonate ABC transport system ATP-binding subunit PhnT	G3M9Y6	Bacillus_virus	9.7e-26	33.7
WP_004931467.1\|2290031_2291042_-	2-aminoethylphosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_171403527.1\|2291219_2291939_-	phosphonate utilization transcriptional regulator PhnR	NA	NA	NA	NA
WP_171403528.1\|2292093_2293197_+	2-aminoethylphosphonate--pyruvate transaminase	NA	NA	NA	NA
WP_171403529.1\|2293206_2294016_+	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA
WP_004931458.1\|2294079_2295471_-	L-cystine transporter	NA	NA	NA	NA
WP_004931456.1\|2295652_2296201_-	metal-dependent hydrolase	A0A127AVX7	Bacillus_phage	1.4e-06	35.1
WP_048323136.1\|2296610_2297276_-	hexitol phosphatase HxpB	NA	NA	NA	NA
WP_171403530.1\|2297340_2298621_-\|protease	protease	NA	NA	NA	NA

DBSCAN-SWA_6

3596065 : 3641896

Salmonella_phage(37.78%)

head,portal,tail,integrase,capsid,plate,terminase,transposase,holin,protease

attL 3594655:3594702|attR 3638732:3638779

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3594655:3594702	attL	NA	NA	NA	NA
WP_171404007.1\|3596065_3596476_+	type II toxin-antitoxin system HicB family antitoxin	Q775F5	Haemophilus_virus	1.1e-35	51.5
WP_171404008.1\|3596533_3597568_-	acyltransferase	A0A2H4JA46	uncultured_Caudovirales_phage	4.0e-10	33.5
WP_171404009.1\|3597608_3597821_-	hypothetical protein	NA	NA	NA	NA
WP_171404010.1\|3599087_3599675_-	DUF2313 domain-containing protein	A0A192Y5V3	Salmonella_phage	3.4e-91	77.9
WP_171404011.1\|3599678_3600752_-\|plate	baseplate J/gp47 family protein	A0A192Y6E4	Salmonella_phage	7.8e-150	72.1
WP_171404746.1\|3600744_3601158_-	phage GP46 family protein	A0A192Y6D0	Salmonella_phage	1.4e-51	70.8
WP_171404012.1\|3601157_3601694_-\|plate	phage baseplate assembly protein	U5P081	Shigella_phage	6.8e-38	51.7
WP_171404013.1\|3601693_3602764_-\|plate	baseplate protein	U5P0H6	Shigella_phage	4.4e-145	69.9
WP_171404014.1\|3602760_3604062_-	DNA circularization N-terminal domain-containing protein	U5P4I0	Shigella_phage	8.2e-146	60.0
WP_171404015.1\|3604097_3606005_-\|tail	phage tail tape measure protein	U5P420	Shigella_phage	9.8e-180	56.1
WP_055312938.1\|3606089_3606413_-\|tail	phage tail assembly protein	Q8HAC3	Salmonella_phage	3.3e-27	58.9
WP_025303576.1\|3606409_3606766_-\|tail	phage tail tube protein	Q8W622	Enterobacteria_phage	7.2e-52	82.2
WP_151523078.1\|3606765_3608283_-\|tail	phage tail sheath subtilisin-like domain-containing protein	Q8HAC5	Salmonella_phage	1.1e-194	70.1
WP_171404016.1\|3608279_3608453_-	DUF2635 domain-containing protein	A0A1C9II04	Salmonella_phage	4.6e-12	61.8
WP_171404017.1\|3608456_3609017_-	hypothetical protein	Q8HAC7	Salmonella_phage	3.9e-84	81.7
WP_055312932.1\|3609013_3609532_-	hypothetical protein	Q8HAC8	Salmonella_phage	5.0e-78	84.1
WP_055312929.1\|3609503_3609914_-\|head	phage head closure protein	A0A192Y6C2	Salmonella_phage	3.0e-46	69.9
WP_025303580.1\|3609910_3610234_-\|head,tail	phage gp6-like head-tail connector protein	S5FKK6	Shigella_phage	3.2e-35	65.1
WP_171404018.1\|3610314_3611553_-\|capsid	phage major capsid protein	Q8SBH8	Shigella_phage	1.5e-189	83.2
WP_049193565.1\|3611562_3612162_-\|head,protease	HK97 family phage prohead protease	Q8SBH9	Shigella_phage	1.4e-87	79.9
WP_048796487.1\|3612154_3613381_-\|portal	phage portal protein	A0A1W6JP33	Morganella_phage	1.4e-195	80.2
WP_025303584.1\|3613370_3613532_-	hypothetical protein	NA	NA	NA	NA
WP_049193569.1\|3613528_3615262_-\|terminase	terminase large subunit	Q8HAD6	Salmonella_phage	7.5e-304	85.2
WP_048796489.1\|3615258_3615753_-\|terminase	phage terminase small subunit P27 family	U5P067	Shigella_phage	3.6e-78	85.4
WP_025303587.1\|3615848_3616205_-	HNH endonuclease	S5FKR6	Shigella_phage	3.9e-50	76.3
WP_171404019.1\|3616185_3616548_-	hypothetical protein	NA	NA	NA	NA
WP_171404020.1\|3616544_3617174_-	methyltransferase domain-containing protein	A0A2H4PI74	Pseudomonas_phage	2.6e-44	46.9
WP_171404021.1\|3617148_3618018_-	hypothetical protein	B5WZS7	Pseudomonas_phage	1.7e-70	47.0
WP_171404022.1\|3618001_3618547_-	HNH endonuclease	A0A2H4J5T2	uncultured_Caudovirales_phage	2.6e-21	37.5
WP_101453884.1\|3619303_3619498_-	hypothetical protein	K7PHC3	Enterobacterial_phage	6.9e-17	72.1
WP_171404023.1\|3619650_3620043_-	DUF2570 family protein	NA	NA	NA	NA
WP_171404024.1\|3620039_3620432_-	M15 family metallopeptidase	A0A0A7NQ86	Enterobacteria_phage	4.3e-50	73.1
WP_171404025.1\|3620421_3620778_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_151523087.1\|3622097_3622919_-	antitermination protein	A0A1B5FPA5	Escherichia_phage	3.1e-50	38.5
WP_171404026.1\|3622915_3623953_-	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	3.2e-84	46.9
WP_171404027.1\|3623949_3624489_-	phage N-6-adenine-methyltransferase	A0A1W6JP96	Morganella_phage	3.7e-60	62.6
WP_171404028.1\|3624485_3624728_-	hypothetical protein	A0A1W6JP32	Morganella_phage	1.6e-07	38.8
WP_171404029.1\|3624724_3625738_-	conserved phage C-terminal domain-containing protein	U5P0A0	Shigella_phage	1.2e-32	60.9
WP_171404030.1\|3625734_3625914_-	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_171404747.1\|3625915_3626554_-	phage antirepressor KilAC domain-containing protein	A0A2I7R827	Vibrio_phage	1.4e-53	55.9
WP_171404031.1\|3626776_3627325_-	DNA-binding protein	A0A1C9II13	Salmonella_phage	5.9e-53	57.6
WP_171404032.1\|3627694_3628165_+	hypothetical protein	NA	NA	NA	NA
WP_156865523.1\|3628380_3628605_-	helix-turn-helix domain-containing protein	A0A2H4FNF3	Salmonella_phage	5.8e-07	51.7
WP_171404033.1\|3628744_3629308_+	helix-turn-helix domain-containing protein	K7P850	Enterobacteria_phage	4.2e-06	26.8
WP_171404034.1\|3630272_3630494_-	hypothetical protein	NA	NA	NA	NA
WP_171402890.1\|3630628_3631420_-	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	2.1e-75	55.8
WP_171402891.1\|3631416_3632445_-\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.4e-68	43.7
WP_049193629.1\|3633425_3633797_+	hypothetical protein	Q8HAA1	Salmonella_phage	2.1e-46	74.0
WP_171404035.1\|3633851_3634673_+	YfdQ family protein	A0A192Y6E5	Salmonella_phage	6.0e-94	62.9
WP_171404036.1\|3634755_3635289_+	HD family hydrolase	A0A192Y8M4	Salmonella_phage	2.2e-57	61.4
WP_171404037.1\|3635290_3635599_+	hypothetical protein	NA	NA	NA	NA
WP_171404038.1\|3636380_3636554_+	hypothetical protein	NA	NA	NA	NA
WP_171404039.1\|3636546_3637128_+	3'-5' exoribonuclease	A0A192Y6E0	Salmonella_phage	2.2e-66	66.7
WP_071826138.1\|3637172_3637391_+	hypothetical protein	NA	NA	NA	NA
WP_025303613.1\|3637390_3638590_+\|integrase	site-specific integrase	A0A2H4J1K3	uncultured_Caudovirales_phage	7.6e-29	30.0
WP_171404040.1\|3638824_3641896_-	tetrathionate reductase subunit TtrA	A0A077SK27	Escherichia_phage	3.2e-07	27.1
3638732:3638779	attR	NA	NA	NA	NA

DBSCAN-SWA_7

4005343 : 4038323

Salmonella_phage(24.24%)

tail,terminase,integrase

attL 4028566:4028580|attR 4044507:4044521

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_171404166.1\|4005343_4008733_-	hypothetical protein	A0A1E1GEP2	Vibrio_phage	2.2e-182	35.5
WP_171404754.1\|4008732_4011489_-	hypothetical protein	A0A193GYI3	Enterobacter_phage	7.2e-99	40.0
WP_171404167.1\|4011498_4012068_-	hypothetical protein	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	6.1e-29	47.9
WP_171404168.1\|4012060_4012534_-	hypothetical protein	Q858G2	Salmonella_phage	1.2e-51	64.7
WP_171404169.1\|4012533_4015035_-	hypothetical protein	A0A0F6TJD3	Escherichia_coli_O157_typing_phage	5.2e-306	61.3
WP_171404170.1\|4015034_4015643_-	hypothetical protein	A0A0F6TJN5	Escherichia_coli_O157_typing_phage	5.0e-61	60.9
WP_171404171.1\|4015642_4015966_-	hypothetical protein	T1SBJ0	Salmonella_phage	1.6e-21	54.9
WP_065404214.1\|4016005_4016284_-	hypothetical protein	NA	NA	NA	NA
WP_171404172.1\|4016300_4016747_-	hypothetical protein	A0A193GYT9	Enterobacter_phage	4.2e-33	59.9
WP_104874763.1\|4016800_4017784_-	hypothetical protein	A0A0F6TJQ9	Escherichia_coli_O157_typing_phage	3.5e-141	74.3
WP_171404173.1\|4017790_4018507_-	peptidase	Q2A089	Sodalis_phage	5.5e-43	69.8
WP_053091965.1\|4018517_4018784_-	hypothetical protein	V5KSC6	Escherichia_phage	8.9e-23	89.6
WP_171404755.1\|4018749_4019046_-	hypothetical protein	Q2A090	Sodalis_phage	2.4e-29	72.9
WP_171404174.1\|4019045_4020731_-\|tail	phage tail protein	T1S9Z7	Salmonella_phage	7.3e-187	58.5
WP_171404175.1\|4021028_4021292_+	hypothetical protein	NA	NA	NA	NA
WP_171404176.1\|4021317_4022790_-\|terminase	terminase	G9L6B8	Escherichia_phage	1.8e-234	77.6
WP_171404177.1\|4022786_4023338_-\|terminase	terminase small subunit	Q858H4	Salmonella_phage	2.2e-55	59.7
WP_171404178.1\|4023444_4023831_-	hypothetical protein	H9C172	Pectobacterium_phage	1.3e-11	35.1
WP_171404179.1\|4023823_4024504_-	hypothetical protein	R9W0X9	Serratia_phage	1.6e-44	49.6
WP_171404180.1\|4024513_4024822_-	hypothetical protein	NA	NA	NA	NA
WP_171404181.1\|4024827_4025151_-	hypothetical protein	NA	NA	NA	NA
WP_171404182.1\|4025140_4025329_-	hypothetical protein	NA	NA	NA	NA
WP_171404183.1\|4025325_4025526_-	hypothetical protein	R9VYJ0	Serratia_phage	1.1e-30	92.4
WP_171404184.1\|4025537_4026569_-	phosphoadenosine phosphosulfate reductase family protein	B7SYG0	Stenotrophomonas_phage	4.6e-67	44.3
WP_171404185.1\|4026568_4027201_-	hypothetical protein	A0A077KCB2	Edwardsiella_phage	4.4e-60	51.8
WP_171404186.1\|4027197_4027731_-	hypothetical protein	J9Q748	Salmonella_phage	1.8e-62	65.1
WP_049234891.1\|4028166_4028379_-	TraR/DksA C4-type zinc finger protein	A2I309	Vibrio_virus	2.9e-08	56.8
WP_171404187.1\|4028381_4028852_-	hypothetical protein	A0A193GYM2	Enterobacter_phage	2.8e-59	74.8
4028566:4028580	attL	NA	NA	NA	NA
WP_171404188.1\|4029061_4029622_-	replication protein	A0A0U2JGJ0	Escherichia_phage	2.1e-21	37.0
WP_033632341.1\|4030483_4030690_-	hypothetical protein	A0A193GYW4	Enterobacter_phage	2.5e-09	45.0
WP_171404189.1\|4030833_4031052_-	hypothetical protein	Q858D6	Salmonella_phage	1.9e-15	58.0
WP_171404190.1\|4031200_4031797_+	helix-turn-helix transcriptional regulator	G9L6A6	Escherichia_phage	8.1e-48	51.3
WP_072270178.1\|4032071_4032224_+	DUF2985 domain-containing protein	T1SA20	Salmonella_phage	1.6e-05	50.0
WP_171404191.1\|4032220_4033267_+	hypothetical protein	M9P0E1	Enterobacteria_phage	3.0e-37	59.5
WP_049234883.1\|4033274_4033580_+	hypothetical protein	NA	NA	NA	NA
WP_171404192.1\|4033579_4034401_+	PD-(D/E)XK nuclease-like domain-containing protein	A0A193GYK2	Enterobacter_phage	1.6e-126	79.0
WP_171404193.1\|4034397_4035276_+	recombinase RecT	G9L6A2	Escherichia_phage	2.6e-119	73.6
WP_049234879.1\|4035316_4035568_+	AlpA family phage regulatory protein	A0A0F6TJ45	Escherichia_coli_O157_typing_phage	8.4e-15	54.7
WP_171404194.1\|4035682_4036183_+	hypothetical protein	NA	NA	NA	NA
WP_171404195.1\|4036832_4037117_+	hypothetical protein	NA	NA	NA	NA
WP_171404196.1\|4037120_4038323_-\|integrase	tyrosine-type recombinase/integrase	T1S9J3	Salmonella_phage	6.2e-156	69.3
4044507:4044521	attR	NA	NA	NA	NA

DBSCAN-SWA_8

4510191 : 4557699

Escherichia_phage(25.0%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004937462.1\|4510191_4510704_+\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA
WP_015379043.1\|4510805_4511501_+	deoxyribonuclease I	NA	NA	NA	NA
WP_015379044.1\|4511570_4512302_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_171404361.1\|4512312_4513263_+	glutathione synthase	NA	NA	NA	NA
WP_004937452.1\|4513396_4513960_+	YqgE/AlgH family protein	NA	NA	NA	NA
WP_015379046.1\|4513959_4514382_+	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_171404362.1\|4514378_4515401_-	type IV pilus twitching motility protein PilT	NA	NA	NA	NA
WP_171404364.1\|4515421_4516129_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_171404366.1\|4516148_4516970_+	pyrroline-5-carboxylate reductase	NA	NA	NA	NA
WP_103086314.1\|4517001_4517556_+	YggT family protein	NA	NA	NA	NA
WP_171404367.1\|4517552_4517846_+	YggU family protein	NA	NA	NA	NA
WP_016930092.1\|4517986_4518580_+	XTP/dITP diphosphatase	NA	NA	NA	NA
WP_171404368.1\|4518572_4519715_+	radical SAM family heme chaperone HemW	NA	NA	NA	NA
WP_025304253.1\|4519752_4520001_-	DUF2442 domain-containing protein	NA	NA	NA	NA
WP_171404370.1\|4520090_4520813_-	DUF2884 domain-containing protein	NA	NA	NA	NA
WP_047575480.1\|4520843_4521767_-	glutaminase B	NA	NA	NA	NA
WP_019456098.1\|4521862_4522189_-	YggL family protein	NA	NA	NA	NA
WP_004937410.1\|4522188_4522908_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_021504756.1\|4523040_4524186_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_004937404.1\|4524182_4524455_+	oxidative damage protection protein	NA	NA	NA	NA
WP_033644661.1\|4524518_4525595_+	membrane-bound lytic murein transglycosylase MltC	NA	NA	NA	NA
WP_171404764.1\|4525643_4527809_-	ornithine decarboxylase SpeF	NA	NA	NA	NA
WP_171404371.1\|4528785_4529031_+	DUF4102 domain-containing protein	I6R0M2	Salmonella_phage	3.0e-17	58.7
WP_171404372.1\|4529504_4530242_+	class I SAM-dependent methyltransferase	A0A1X9I6N4	Streptococcus_phage	1.7e-07	28.7
WP_171404373.1\|4530306_4531347_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_171404374.1\|4531370_4532744_+	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_171404765.1\|4532973_4533534_+	recombinase family protein	A0A1W5LU24	Ralstonia_phage	1.2e-32	43.2
WP_171404375.1\|4533517_4535179_+\|transposase	transposase family protein	NA	NA	NA	NA
WP_171404376.1\|4535111_4536134_+	AAA family ATPase	NA	NA	NA	NA
WP_171404377.1\|4536289_4536757_-	hypothetical protein	NA	NA	NA	NA
WP_004929861.1\|4537648_4537936_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A2H4JBF4	uncultured_Caudovirales_phage	3.4e-20	49.5
WP_038883487.1\|4537932_4538184_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_171404378.1\|4538279_4538720_-	dehydrogenase	NA	NA	NA	NA
WP_171404379.1\|4539325_4540090_-	plasmid SOS inhibition protein A	NA	NA	NA	NA
WP_171404380.1\|4540086_4540551_-	conjugation system SOS inhibitor PsiB	NA	NA	NA	NA
WP_171404381.1\|4540593_4542639_-	ParB/RepB/Spo0J family partition protein	NA	NA	NA	NA
WP_171404382.1\|4543157_4543661_-	antirestriction protein	A0A1S5R3R9	Pseudomonas_phage	1.3e-06	29.9
WP_171404383.1\|4544011_4544248_-	hypothetical protein	NA	NA	NA	NA
WP_171404384.1\|4544302_4544707_-	hypothetical protein	NA	NA	NA	NA
WP_171404385.1\|4544720_4544813_-	hypothetical protein	NA	NA	NA	NA
WP_129993891.1\|4545058_4545301_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_171404386.1\|4545696_4546101_-	plasmid partitioning/stability family protein	NA	NA	NA	NA
WP_129993888.1\|4546103_4547078_-	StbA family protein	A0A222YXF2	Escherichia_phage	5.3e-73	45.4
WP_171404387.1\|4547336_4547678_-	DUF3085 domain-containing protein	NA	NA	NA	NA
WP_171404388.1\|4547724_4548228_-	hypothetical protein	NA	NA	NA	NA
WP_171404389.1\|4548683_4549454_-	N-6 DNA methylase	NA	NA	NA	NA
WP_171402891.1\|4549687_4550716_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.4e-68	43.7
WP_171402890.1\|4550712_4551504_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	2.1e-75	55.8
WP_171404390.1\|4553003_4553513_-	RNA-directed DNA polymerase	NA	NA	NA	NA
WP_171403030.1\|4553573_4555166_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.9e-185	65.4
WP_171403031.1\|4555196_4555547_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.1e-40	66.4
WP_171403032.1\|4555543_4555957_-\|transposase	transposase	Q6H9S5	Enterobacteria_phage	1.1e-32	78.6
WP_171403030.1\|4556106_4557699_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.9e-185	65.4

DBSCAN-SWA_9

5014504 : 5088321

Shigella_phage(28.57%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_082997486.1\|5014504_5015341_+\|protease	rhomboid family intramembrane serine protease GlpG	NA	NA	NA	NA
WP_004930797.1\|5015392_5016151_+	DeoR/GlpR family transcriptional regulator	NA	NA	NA	NA
WP_171404514.1\|5016398_5017907_+	glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_031300290.1\|5017966_5020414_-	glycogen phosphorylase	A0A140XAG6	Dickeya_phage	9.4e-34	84.5
WP_044030024.1\|5020555_5021986_-	glycogen synthase GlgA	NA	NA	NA	NA
WP_004930810.1\|5022121_5023399_-	glucose-1-phosphate adenylyltransferase	NA	NA	NA	NA
WP_033645309.1\|5023414_5025397_-	glycogen debranching protein GlgX	NA	NA	NA	NA
WP_075684686.1\|5025393_5027580_-	1,4-alpha-glucan branching enzyme	NA	NA	NA	NA
WP_171404515.1\|5028023_5029127_-	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_004930825.1\|5029319_5029913_+	YhgN family NAAT transporter	NA	NA	NA	NA
WP_171404516.1\|5029943_5030471_-	gluconokinase	NA	NA	NA	NA
WP_171404517.1\|5030582_5031899_-	gluconate transporter	NA	NA	NA	NA
WP_004930833.1\|5032239_5033235_-	gluconate operon transcriptional repressor GntR	NA	NA	NA	NA
WP_004930835.1\|5033527_5034223_-	pirin family protein	NA	NA	NA	NA
WP_049186507.1\|5034612_5035128_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_171404518.1\|5036360_5037257_-	myo-inosose-2 dehydratase	NA	NA	NA	NA
WP_004930845.1\|5037316_5038201_-	sugar phosphate isomerase/epimerase	NA	NA	NA	NA
WP_171404519.1\|5038240_5039254_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_171404520.1\|5039289_5041230_-	3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing)	NA	NA	NA	NA
WP_171404521.1\|5041778_5043710_+	5-dehydro-2-deoxygluconokinase	NA	NA	NA	NA
WP_004930856.1\|5043913_5044750_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_131165336.1\|5045145_5045415_-	hypothetical protein	NA	NA	NA	NA
WP_154871820.1\|5045590_5046412_-	5-deoxy-glucuronate isomerase	NA	NA	NA	NA
WP_099981731.1\|5046489_5047995_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_049186517.1\|5048551_5049994_+	sugar porter family MFS transporter	NA	NA	NA	NA
WP_171404522.1\|5050026_5050863_+	TIM barrel protein	NA	NA	NA	NA
WP_004930878.1\|5050898_5051672_-	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA
WP_042785526.1\|5051658_5052336_-	iron ABC transporter ATP-binding protein FetA	G3M9Y6	Bacillus_virus	1.3e-22	32.4
WP_033645326.1\|5052525_5052813_-	hypothetical protein	NA	NA	NA	NA
WP_171404523.1\|5052850_5053978_-	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_171404524.1\|5053980_5054394_-	hypothetical protein	NA	NA	NA	NA
WP_019455211.1\|5055152_5055683_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_171404525.1\|5055774_5056326_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_171404526.1\|5056397_5058899_+	fimbria/pilus outer membrane usher protein	NA	NA	NA	NA
WP_171404774.1\|5058980_5059670_+	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_033645333.1\|5059681_5060293_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_171404527.1\|5060307_5061312_+	fimbrial protein	NA	NA	NA	NA
WP_171404528.1\|5061330_5061870_+	type 1 fimbrial protein	NA	NA	NA	NA
WP_171404529.1\|5061972_5062596_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_171404530.1\|5063094_5064267_+	hypothetical protein	NA	NA	NA	NA
WP_171404531.1\|5064950_5065220_-	hypothetical protein	F1C5A5	Cronobacter_phage	7.6e-14	59.3
WP_171404532.1\|5065280_5066457_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	3.6e-100	56.6
WP_171404533.1\|5066852_5068154_-	T3SS effector OspC family protein	NA	NA	NA	NA
WP_171404534.1\|5069509_5070952_-	IpaD/SipD/SspD family type III secretion system needle tip protein	NA	NA	NA	NA
WP_171404535.1\|5071650_5072133_+	hypothetical protein	NA	NA	NA	NA
WP_171404536.1\|5072973_5073282_-\|transposase	transposase	NA	NA	NA	NA
WP_171404537.1\|5073683_5074406_+	hypothetical protein	NA	NA	NA	NA
WP_171404538.1\|5075314_5076528_-\|transposase	IS3 family transposase	Q716C2	Shigella_phage	3.4e-101	58.1
WP_171404539.1\|5076642_5077437_-	hypothetical protein	NA	NA	NA	NA
WP_171404540.1\|5077443_5078430_-\|transposase	transposase	NA	NA	NA	NA
WP_171404541.1\|5078452_5078992_-	fimbrial protein	NA	NA	NA	NA
WP_171404542.1\|5078996_5079524_-	type 1 fimbrial protein	NA	NA	NA	NA
WP_171404775.1\|5079570_5080296_-	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_171404543.1\|5080359_5082852_-	fimbria/pilus outer membrane usher protein	NA	NA	NA	NA
WP_171404544.1\|5082959_5083484_-	type 1 fimbrial protein	NA	NA	NA	NA
WP_171404545.1\|5084515_5084869_+	hypothetical protein	NA	NA	NA	NA
WP_171404776.1\|5086545_5086728_+	DUF1364 family protein	A0A1Y0SX23	Pseudomonas_phage	2.2e-09	61.2
WP_171402705.1\|5086744_5086999_+	hypothetical protein	NA	NA	NA	NA
WP_171402891.1\|5087292_5088321_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	1.4e-68	43.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP053286

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection