CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP053395	Helicobacter pylori strain HP1352 plasmid unnamed, complete sequence	0 crisprs	c2c9_V-U4	0	0	0	0
NZ_CP053394	Helicobacter pylori strain HP1352 chromosome, complete genome	4 crisprs	c2c9_V-U4,cas3,cas14j	0	4	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP053394_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053394_1

235950-236097

TypeV-U4

Consensus_repeat	Method
TTTTAACTTTGATTGTTTGGTTTGGTTGTTTGAGATTTGTTGTAA	CRISPRCasFinder

1 spacers

c2c9_V-U4

The CRISPR arrays of NZ_CP053394_1

>merge|NZ_CP053394|1|235950-236097|CRISPRCasFinder
TTTTAACTTTGATTGTTTGGTTTGGTTGTTTGAGATTTGTTGTAATAAAGCGGTTTTAAAAGAAATGAGGTTGTTTGAATAGGGGTAGTTACAAAAAAGGGTTTTTTAACTTTGATTGTTTGGTTTGGTTGTTTGAGATTTGTTTGTA

>NZ_CP053394|1|1|235950-236097|CRISPRCasFinder
TTTTAACTTTGATTGTTTGGTTTGGTTGTTTGAGATTTGTTGTAA	TAAAGCGGTTTTAAAAGAAATGAGGTTGTTTGAATAGGGGTAGTTACAAAAAAGGGTT
TTTTAACTTTGATTGTTTGGTTTGGTTGTTTGAGATTTGTTTGTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053394.1\|WP_001272690.1\|224032_224314_+\|TrbC/VirB2-family-protein	unknown	unknown	gnl\|CDD\|368210
NZ_CP053394.1\|WP_001916851.1\|244699_244975_+\|ATP-dependent-Clp-protease-adaptor-ClpS	unknown	unknown	gnl\|CDD\|225038
NZ_CP053394.1\|WP_000584951.1\|224313_224577_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053394.1\|WP_001917638.1\|224578_226942_+\|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase	unknown	unknown	gnl\|CDD\|273346
NZ_CP053394.1\|WP_000117355.1\|238437_239718_-\|citrate-synthase	unknown	unknown	gnl\|CDD\|180164
NZ_CP053394.1\|WP_001916856.1\|241262_241790_+\|DUF1523-family-protein	unknown	unknown	gnl\|CDD\|369397
NZ_CP053394.1\|WP_001917699.1\|236887_238147_+\|transposase	c2c9_V-U4	-	gnl\|CDD\|223747
NZ_CP053394.1\|WP_001917637.1\|223060_223888_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053394.1\|WP_001916849.1\|247183_247537_+\|aspartate-1-decarboxylase	unknown	unknown	gnl\|CDD\|376751
NZ_CP053394.1\|WP_000323979.1\|239917_241195_+\|isocitrate-dehydrogenase-(NADP(+))	unknown	unknown	gnl\|CDD\|180792
NZ_CP053394.1\|WP_171407232.1\|233619_235686_-\|outer-membrane-beta-barrel-protein	unknown	unknown	gnl\|CDD\|375731
NZ_CP053394.1\|WP_001917639.1\|227248_228589_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225559
NZ_CP053394.1\|WP_001917642.1\|230872_231445_-\|lipid-A-1-phosphatase-LpxE	unknown	unknown	gnl\|CDD\|181978
NZ_CP053394.1\|WP_001916850.1\|244974_247194_+\|ATP-dependent-Clp-protease-ATP-binding-subunit	unknown	unknown	gnl\|CDD\|223616
NZ_CP053394.1\|WP_001916855.1\|241766_242423_-\|dethiobiotin-synthase	unknown	unknown	gnl\|CDD\|223210
NZ_CP053394.1\|WP_001917643.1\|231455_233021_-\|phosphoethanolamine--lipid-A-transferase-EptA	unknown	unknown	gnl\|CDD\|236581
NZ_CP053394.1\|WP_001917641.1\|229646_230864_+\|carboxynorspermidine-decarboxylase	unknown	unknown	gnl\|CDD\|273414
NZ_CP053394.1\|WP_001916854.1\|242426_244157_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053394.1\|WP_001917640.1\|228684_229650_+\|chemotaxis-protein-CheV	unknown	unknown	gnl\|CDD\|223905
NZ_CP053394.1\|WP_025449289.1\|236259_236913_+\|IS607-family-transposase	unknown	unknown	gnl\|CDD\|239738

Protein	Function_ID	Function_description	E-value
NZ_CP053394.1\|WP_001916851.1\|244699_244975_+\|ATP-dependent-Clp-protease-adaptor-ClpS	gnl\|CDD\|225038	COG2127, COG2127, Uncharacterized conserved protein [Function unknown].	2.91807e-34
NZ_CP053394.1\|WP_001272690.1\|224032_224314_+\|TrbC/VirB2-family-protein	gnl\|CDD\|368210	pfam04956, TrbC, TrbC/VIRB2 family. Conjugal transfer protein, TrbC has been identified as a subunit of the pilus precursor in bacteria. The protein undergoes three processing steps before gaining its mature cyclic structure. This family also contains several VIRB2 type IV secretion proteins. The virB2 gene encodes a putative type IV secretion system and is known to be a pathogenicity factor in Bartonella species.	0.00550849
NZ_CP053394.1\|WP_001917638.1\|224578_226942_+\|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase	gnl\|CDD\|273346	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).	0
NZ_CP053394.1\|WP_000117355.1\|238437_239718_-\|citrate-synthase	gnl\|CDD\|180164	PRK05614, gltA, citrate synthase.	0
NZ_CP053394.1\|WP_001916856.1\|241262_241790_+\|DUF1523-family-protein	gnl\|CDD\|369397	pfam07509, DUF1523, Protein of unknown function (DUF1523).	8.97769e-67
NZ_CP053394.1\|WP_001917699.1\|236887_238147_+\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	4.73632e-43
NZ_CP053394.1\|WP_001916849.1\|247183_247537_+\|aspartate-1-decarboxylase	gnl\|CDD\|376751	pfam02261, Asp_decarbox, Aspartate decarboxylase. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme aspartate decarboxylase EC:4.1.1.11 which requires a pyruvoyl group for its activity. It is synthesized initially as a proenzyme which is then proteolytically cleaved to an alpha (C-terminal) and beta (N-terminal) subunit and a pyruvoyl group. This family contains both chains of aspartate decarboxylase.	8.90071e-63
NZ_CP053394.1\|WP_000323979.1\|239917_241195_+\|isocitrate-dehydrogenase-(NADP(+))	gnl\|CDD\|180792	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed.	0
NZ_CP053394.1\|WP_171407232.1\|233619_235686_-\|outer-membrane-beta-barrel-protein	gnl\|CDD\|375731	pfam18304, SabA_adhesion, SabA N-terminal extracellular adhesion domain. This is the N-terminal extracellular adhesion domain of Sialic acid binding adhesin (SabA) present in Helicobacter pylori. The N-terminal domain of SabA functions as a sugar-binding adhesion domain with conserved disulfide bonds. Notably, these amino acid residues are not only conserved among SabA orthologs but also between SabA and BabA.	8.52614e-85
NZ_CP053394.1\|WP_001917639.1\|227248_228589_+\|hypothetical-protein	gnl\|CDD\|225559	COG3014, COG3014, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP053394.1\|WP_001917642.1\|230872_231445_-\|lipid-A-1-phosphatase-LpxE	gnl\|CDD\|181978	PRK09597, PRK09597, lipid A 1-phosphatase LpxE.	1.79987e-120
NZ_CP053394.1\|WP_001916850.1\|244974_247194_+\|ATP-dependent-Clp-protease-ATP-binding-subunit	gnl\|CDD\|223616	COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP053394.1\|WP_001916855.1\|241766_242423_-\|dethiobiotin-synthase	gnl\|CDD\|223210	COG0132, BioD, Dethiobiotin synthetase [Coenzyme metabolism].	6.73291e-60
NZ_CP053394.1\|WP_001917643.1\|231455_233021_-\|phosphoethanolamine--lipid-A-transferase-EptA	gnl\|CDD\|236581	PRK09598, PRK09598, phosphoethanolamine--lipid A transferase EptA.	0
NZ_CP053394.1\|WP_001917641.1\|229646_230864_+\|carboxynorspermidine-decarboxylase	gnl\|CDD\|273414	TIGR01047, carboxynorspermidine_decarboxylase, carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus. [Central intermediary metabolism, Polyamine biosynthesis].	0
NZ_CP053394.1\|WP_001917640.1\|228684_229650_+\|chemotaxis-protein-CheV	gnl\|CDD\|223905	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms].	5.12025e-36
NZ_CP053394.1\|WP_025449289.1\|236259_236913_+\|IS607-family-transposase	gnl\|CDD\|239738	cd03769, SR_IS607_transposase_like, Serine Recombinase (SR) family, IS607-like transposase subfamily, catalytic domain; members contain a DNA binding domain with homology to MerR/SoxR located N-terminal to the catalytic domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. This subfamily is composed of proteins that catalyze the transposition of insertion sequence (IS) elements such as IS607 from Helicobacter and IS1535 from Mycobacterium, and similar proteins from other bacteria and several archaeal species. IS elements are DNA segments that move to new sites in prokaryotic and eukaryotic genomes causing insertion mutations and gene rearrangements.	1.04405e-64

>NZ_CP053394.1|WP_171407232.1|233619_235686_-|outer-membrane-beta-barrel-protein
MKKKFLSLTLGSLLVSTLSAEDNGFFVSAGYQIGESSQMVKNTKGIQDLSDSYERLNNLLTSYSALNTLIRQSADSNAINNARTNLNASAKNLINDKTNSPAYQAVLLALNAVVGFWNSIAWNVQCGGYTEANGTKTTGSETFNNQPGHSSDHITCGGSGLDPYKAGISGPLSIENFKKLNEAYQIIQTAFKGNPKEGLPVLSNTNTTMEVKIITKNNKNSDSQNQNTKNVTNNAHNLLTQAQTIMNVLTQNCPWVNNRNGELGGASWSIKKGGNVCEIFDTEISAIQDVIKNAEIVVEQSKIVAANAQNQHNLDTGKTFNPYKDANFAQSMFANARAQAEILNRAQAMVKDLETIPQTFRDEFLASCYKPYNGGTYGTPLGTVTKDTFATGCAYVGETLTSLKDSIAHFGTQAEQIHNAQNLAYTLANFSGQYKKLGEHYDSITAAISSLPDAQSLQNVVSKKTNPNSPQGIQDNYYIDSNIHSQVQSRTQELGSNPFRRAGLIAASTTNNGAMNGIGFQVGYKQFFGKNKRWGARYYGFVDYNHTYNKSQFFNASSDVWTYGVGSDLLVNFINDKATKHNKISFGAFGGIQLAGTSWLNSQFVNLANVNNYYKAKINTSNFQFLFNLGLRTNLARNKRRGADHSAQHGMELGVKIPTINTNYYSLLGTTLQYRRLYSVYLNYVFAY
>NZ_CP053394.1|WP_001917643.1|231455_233021_-|phosphoethanolamine--lipid-A-transferase-EptA
MASLFHLKFLKPLSCLQAGLLYSLIFGVLYHFPLFAYVYKESNQVSFIAMIIIVLFCVNGALFLTLGLISVYLMRLSAIVFSWLNSIAFYFISAYGVFLNKSMMSNVLNTNTHELLGFLSVKLFIVIVVFGVLPGYVIYKIPLKNSSKKAPFLAILALVFIFIASALANAKNWLWFDKHAKFIGGLILPFAYSVNAFRVSALKFFAPTIKPLPLFSPNRSHSFVVLVIGESARKHNYALYGYKKPTTPKLSKRLENHELTLFNATSCATYTTASLECILDSSFKNNAYDNLPTYLTKAGIKVFWYSANDGEKNVKVTSYLKNYELIQKCPNCEAIAPYDESLLYNLPDLLKEHSNENVLLILHLAGSHGPNYDNKVPLNFRVFKPYCSSADLSSCSKESLINAYDNTIFYNDYLLDKIISMLKNAKQPALMIYLSDHGESLGEGAYYLHGIPKSIAPKEQYEIPFIVYANDLFKEKHSIIQTQTPIHQNVVFHSILGVFLDFKNPSAVYRPSLDLLKHKKE
>NZ_CP053394.1|WP_001917642.1|230872_231445_-|lipid-A-1-phosphatase-LpxE
MKRFLFKQKFCESLPKSFSKTLLALSLGLILSGIFAPFPKVPKQHSVPLVFHFTEHYARFIPTILSVAIPLIQRDAIGLFQIANASVATTILTHTTKRALNNVTINNQRLGERPYGGNFNMPSGHSSMVGLAVVFLMCRYSFKKYWWLLPLVPLTMLARIYLDMHTIGAVLAGLGIGMLCVSLFTSPKKS
>NZ_CP053394.1|WP_001917641.1|229646_230864_+|carboxynorspermidine-decarboxylase
MKKYSAIPTPCYVLESERLEKNAKILEIVRQQSGAKVLLALKGYAFWREFEVLRQKLNGCCASGLYEAKLAFEEFGGRESQKEICVYSPAFKEAEMSAILPLATSIIFNSFYQYATYKDRILDKNKQLENLGLSPIKMGLRINPLYSEVTPAIYNPCSKVSRLGITPSEFEKGVKEHGLEGVSGLHFHTHCEQNADALCRTLEHVERHFKPYLENMEWVNFGGGHHITRSDYDVNLLIQTIKDFKERYHNIEVILEPGEAIGWQCGFLIASVIDIVQNDQEIAVLDASFSAHMPDCLEMPYRPSILKVSVENDEELVEVEKGENQGAFSYFLGGPTCLAGDFMGSFSFETPLKRGDKIVFQDMLHYTIVKNNSFNGVPLPSLARLDQQGFKILKNFSYEDYKNRN
>NZ_CP053394.1|WP_001917640.1|228684_229650_+|chemotaxis-protein-CheV
MADSLAGIDQVTNLHKNNELQLLCFRLGKNKDLYAVNVFKIREVVKYHGNLTIISHENNSLVEGLIIIRELTIPLIDMKKWFYYDSQNKNKDLRPYRIEKEKGEDDIVMICEFSRWTIGVRIYEADRILSKKWTEMEQSAGLGGSAGNNKLVSRTRYFDGRLVQVVDIEKMLIDVFPWIEDEKHSDLETLSKIHSNQCVLLADDSPSVLKTMQMILDKLGVKHIDFINGKTLLEHLFNPTTDVNSIGLIITDLEMPEASGFEVIKQVKNNPLTSKIPIVVNSSMSGSSNEDMARSLKADDFISKSNPKDIQRVVKQFLESA
>NZ_CP053394.1|WP_001917639.1|227248_228589_+|hypothetical-protein
MDLEHFNTLYYEESPKQAYEYSKQFTKKKKNALLWDLQNGLSALYARDYETSLGVLDQAEQRFDKTQSAFTRGAGYMGATMINDNVRAYGGNIYEGVLINYYKAIDYMLLNDSAKARVQFNRANERQRRAKEFYYEEVQKAIKEIDSSKKHNINMERSRVEVSEILNNTYSNLDKYEAYQGLLNPAVSYLSGLFYALDGDKNKGLGYLNEAYGISQSPFVAKDLVFFKNPNRSHFTWIIIEDGKEPQKSEFKIDVPIFMIDSVYNVSVALPKLEKGEAFYQNFTLKDGEKVTPFDTLASIDAVVASEFRKQLPYIITRAILSATFKVGMQAVANYYLGFVGGLVTSLYSGVSTFADTRNTSIFAHKIYLMRIKNKAFENYEVQADSIDAFSFSLKPCKRSLESPKVIDARELLSGFVTAPQIFCSNRHNILYVRSFKNGFVLNRLK
>NZ_CP053394.1|WP_001917638.1|224578_226942_+|VirB4-family-type-IV-secretion/conjugal-transfer-ATPase
MLEKLLSAVKQKVSNYFLGVLPKSYSMSEENNILGLYDEHFLLTKNENLVGILRLEGVSYTHLSTEQLQDLFTERQMALDSLEKVVARLVVKRRKIDYKQNIQSDSKYLQAILNQFENKEVYENQYFLVLESTHSLQGVLEHKKKSLMHANRENFKDILSYKAHFLQETLKSLEIQLKNYAPKLLSSKEVLNFYAEYINGFDLPLKPLVGGYLSDSYIASSVTFEKDYFIQESFNQKTYNRLIGIKAYESERITSIAIGALLYQETPLDIIFSIEPMSVNKTLSFLKERAKFSMSNLVKNELLEYQELVKTKRLSMQKFALNILIKAPSLEDLDAQTSLVLGLLFKENLVGVIETFGLKGGYFSFFPERIHLNHRLRFLTSKALACLMVFERQNLGFKANSWGNSPLSVFKNLDYSPFLFNFHNQEVSHNNAKEIARVNGHTLIIGATGSGKSTLISFLMMSTLKYQNMRLLAFDRMQGLYSFTKFFKGHYHDGQSFSINPFCLEPNLQNLEFLQSFFLSMLDLAPSRDKEALEDMNAIFSAIKSLYETLYPKDFSLLDFKETLKRTSSNQLSLSLEPYLNNPLFNALNDAFNSSAFLNVINLDAITQNPKDLGLLAYYLFYKILEESRKNDSGFLVFLDEFKSYVENDLLNTKINALITQARKANGVVVLALQDIYQLSGVKNAHSFLSNMGTLILYPQKNARELKHHFNVPLSETEISFLENTPLYARQVLVKNLGNGSSNMIDVSLEGLGRYLKIFNSDSSHVNKVKALQKDYPTEWREKLLKS
>NZ_CP053394.1|WP_000584951.1|224313_224577_+|hypothetical-protein
MIILSASVKNLREISVKEKFLWLNAKSYLISVFAPFILLPWIDLLSAFLLYLGFLALFSALEFFDEDIADIIVAKSKIKTKTKCYRA
>NZ_CP053394.1|WP_001272690.1|224032_224314_+|TrbC/VirB2-family-protein
MSAHFLKIVFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFFKAPSLANWFMGIF
>NZ_CP053394.1|WP_001917637.1|223060_223888_+|hypothetical-protein
MQEFLGFGVVGNFAGHLEQAGESHSFINMKSEEKDAPKGLFPFYIPYENCYLGRCCIDNHKIILPSDPHLRVQAEPEIALECDVKYDEKHFVTKLVPNFFMAFNDASVRNLDATKLSQKKNFSPASKGMGKKLPIDRFAYGGVCNNFSIASFLKYDNVWRIYGENSKLLKYEFFYQKLLDWIKDQLNHQQDGDSLEALRPFLERHNFPTKMIFAIGATPYMPFAQEHFLQKGDEVVIVAYNHLQYSFEKIQSLLEEDALQAKEHTNLSYVYQIVE
>NZ_CP053394.1|WP_025449289.1|236259_236913_+|IS607-family-transposase
MNKRMLSIGQASKLLGVTIQTLRNWDKKDLLKPDELTKGGERRYKLESLRRINKGVVFNQDELKTIAYARVSSHDQQDDLIRQVQVLELYCAKCGFNYEVIQDLGSGMNYYKKGLTKLLNLILDNQVKRLVLTHKDRLLRFGAELVFSICEAKGVEVVIINKGDENVRFEEESAKDVLEIITVFSARLYGSRSKKNKKLLDEMQEVITNNVSYLNHA
>NZ_CP053394.1|WP_001917699.1|236887_238147_+|transposase
MSAISITHKIALKPNNKHITYFKKAFGCARFAYNWGLAKWKENYQLGIKTNHLQLKKEFNALKKSQFNFVYEVTKYATQQPFIHLNLAFNKFFRDLKKGLVSYPKFKKKREFQGSFYIGGDQIKIIQTANTDYLKIPNLPPIKLTEKLRFQGKINNATITQKGDHFYVSISCGVDESEYKRTHKIQESHNKLGVDIGIKSFVSLSNGLNIYAPKPLDKLTRKLVRISRQLSKKIHPKTKGDKTKKSNNYLKHSKKLTHLHEKIANIRLDFLHKLTSSLIRHSNLFCLENLKVKNMFKNHRLAKSLSDVSMSVFNTLLEYKAKYSNKEILRADTYYPSSKTCSNCQKVKQDLKLKDRIYQCLECGFELDRDINAAINLLKHLVGRVTAEFMPTDLTALLNDLSKNRLATSKVELGIQQKS
>NZ_CP053394.1|WP_000117355.1|238437_239718_-|citrate-synthase
MSVTLINNENNERYEFEMIECTRGPKAVDFSKLFETTGFFSYDPGYSSTAGCQSKISYINGKKGELYYRGHRIEDLVAKYKYVDVCKLLLTGELPKNQDESLEFELELRHRSFVHESLLNMFSAFPSNAHPMAKLSSGVSILSTLYSTHQNMHTEEDYQTMARRIVAKIPTLAAICYRNEVGAPIIYPDIARSYVENILFMLRGYPYSRLKHTTQGEVEITPLEVEAFDKILTLHADHGQNASSTTVRNVASTGVHPYAAISAGISALWGHLHGGANEKVLLQLEEIGDVKNVDKYIARVKDKNDSFKLMGFGHRVYKSYDPRAKILKGLKDELHQKGVKMDERLSEIAAKVEEIALKDEYFIERNLYPNVDFYSGTILRALKIPVRFFTPVFVIGRTVGWCAQLLEHVKSPQARITRPRQVYVGD
>NZ_CP053394.1|WP_000323979.1|239917_241195_+|isocitrate-dehydrogenase-(NADP(+))
MAYNPKILQKPKEGEEITIKDNKLHVPNHPIIPFIEGDGIGSDITPAMIKVVDSAVQKAYKGEKKIAWYEVFVGEKCYQKFKDHKELSPEEQWLLPDTIEAINHYKVSIKGPLTTPIGEGFRSLNVALRQKMDLYVCLRPVRWYGSPSPVKEPQKVDMVIFRENSEDIYAGIEWQEGSTEAKKLIHFLQNELKVKKIRFPESSGIGVKPISKEGTERLVRKAIEYAIDNDKPSVTFVHKGNIMKYTEGAFMKWGYALAQKEFNAQVIDKGPWCSLKNPKTGKEIIIKDMIADAFLQQILLRPSEYSVIATMNLNGDYISDALAAMVGGIGIAPGANLNDTVGMFEATHGTAPKYAGLDKVNPGSIILSAEMMLRHMGWVEAADLIVSAMEKAIKSKKVTYDFARLMDGAKEVKCSEFASVMIENM
>NZ_CP053394.1|WP_001916856.1|241262_241790_+|DUF1523-family-protein
MIKFVRNVVLFILTAIFLALMLLVSYCMPHYSAAVISGVEVKRMNENENTPNNKEVKTLARDVYFVQTYDPKDQKSVTVYRNEDTRFGFPFYFKFNSADISALAQSLVNQQVEVQYYGWRINLFNMFPNVIFLKPLKENADISKPIFSWILYALLLGGFFISVRSVCALFKSKAH
>NZ_CP053394.1|WP_001916855.1|241766_242423_-|dethiobiotin-synthase
MLFISATNTNAGKTTCARLLAKYCNACGVKTILLKPIETGANDAINHSSDAHLFLQDNRLLDRSLTLKDISFYRYHKASAPLIAQQEEDPNAPIDTNDLIQRLQNFTKTYDLVIVEGAGGLCVPITLEENMLDFALQLKAKILVISHDNLGLINDCLLNDFLLKSHQLDYKIAINLRENNAAFHSVSLPYIELFNKRSNNPIVIFQQSLKELMSFALK
>NZ_CP053394.1|WP_001916854.1|242426_244157_-|hypothetical-protein
MLLNYDFLEFVDEPQRNTSLTASIDKALADKKLARQNKPSVRVLGKAMPLSKFLDAVGDEISRLKREQNTETIKGSTIESASLNSILKKIKSGLPFGTISAFRPFKPVFEKDFTEKQQKALISAYKSGFDPKNADKVAQYWQNKPTKIDLHKPIKTKDFFKGNTNIYRTLRNLFGQKFMDSYIAPKSETTMKDFMSSDKFVKKYRYTQKDNMKRTRQLKSLLDSKRHFLGYIQVIGYWKEDLKDDLIPDKETSFFVFTNEPSSTFDLASYLLLLARLFNQAAICYCDNAKTDKVELVSALPNDFGDVWAKFTDITFTIPLIQSITRLHNKVYTFFEKKNMENYGVSFEELSTTKLKAMGMPKDIEGFNIPCKAYIEHHIKTSIHSSLGVERNYPGRTFDMDKIQQYELQAIKRLDLQRCSKSKSFKASYNHNIKVNNLVKALRQGKKASRTLIAKVLANTIDTDAGYCFISDLATQLNNISPRLSKSIVTAIEQVQGLRLTYALIDKVSYNSLHNILSFIFDIDNPLNDQVFEELVIEVPREALKNVKLPQIKNVLTAQIFDGAYQFRGNGYKFKG
>NZ_CP053394.1|WP_001916851.1|244699_244975_+|ATP-dependent-Clp-protease-adaptor-ClpS
MKMYNIPTPTMAQVIMVDDPITTAEFVISALRDFFDKPLEEAKALTSSIHRDGCGVCGVYPYDIARHRAAWVRDKARALEFPLKLLVEEIK
>NZ_CP053394.1|WP_001916850.1|244974_247194_+|ATP-dependent-Clp-protease-ATP-binding-subunit
MAKFNQDLNEVLNQALNLALDLNHALCTTEHVLLVILEHESGEKIIGALERDDYDKIKQILKDYLLQYVPLKSDPAKMPARSFVLLRMLKRMYASAFESVGVEELLILMLDHPDCYASKLMDSFGIARLYSNPALLDLDNHGIPNDTNEEAPKNTPLKKYAKNLSALAQDNALDPVIGREEEILRVIEILGRRKKNNPLLIGEAGVGKTSIAEALALKIAQKEVPEFLQEYEVHSLDLALMVAGAKYRGDFEKRLKKTLKEIQENGRIILFIDEIHTLLGAGSSNAGSLDAANILKPVLTDGSLKCLGATTFEEYRSVFEKDKAFNRRFSVIKVEEPSKEACYLILKKIAPLYEEHHQVRYDESVFKACVDLTSDYMHDKFLPDKAIELLDEVGSRKKISPKKGKKIGVDDVKETLALKLKIPKMRLSSDKKALLRNLEKSLKNKIFAQAEAISLVSNAIKIQHCGLSAKNKPVGSFLFVGPSGVGKTELAKELALNLNLHFERFDMSEYKEAHSVAKLIGSPSGYVGFEQGGLLVNAIKKHPHCLLLLDEIEKAHSNVYDLLLQVMDNATLSDNLGNQASFKHVILIMTSNVGSKDKDTLGFFSAKNTKYDRAVKELLTPELRSRIDAIVPFNALSLEDFERIVSVELDKLKALALEQDIALKFHKEVLKFIVQKSYQTTLGAREIKKIIHHEIKTKLSDILLLQSLKKPCKIACLLEKNQLVLKEIKCAQKVKENDF
>NZ_CP053394.1|WP_001916849.1|247183_247537_+|aspartate-1-decarboxylase
MTFEMLYSKIHRATITDANLNYIGSITIDEDLAKFAKLREGMKVEIVDVNNGERFRTYVILGKKRGEICVNGAAARKVAIGDVVIILAYASMNEDEINAHKPCIVLVDEKNEILEKG

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Crispr_ID: NZ_CP053394_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053394_2

335365-335451

Orphan

Consensus_repeat	Method
TTGTTTTTCTTGTTCTAGTTCTAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP053394_2

>merge|NZ_CP053394|2|335365-335451|CRISPRCasFinder
TTGTTTTTCTTGTTCTAGTTCTATCCCACTCTTGTTCGCTCTATCCCTAGCGTTTTCAACTTCCTTTTTTTCTTGTTCTAGTTCTAT

>NZ_CP053394|2|2|335365-335451|CRISPRCasFinder
TTGTTTTTCTTGTTCTAGTTCTAT	CCCACTCTTGTTCGCTCTATCCCTAGCGTTTTCAACTTC
CTTTTTTTCTTGTTCTAGTTCTAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053394.1\|WP_001264161.1\|341450_341801_+\|50S-ribosomal-protein-L20	unknown	unknown	gnl\|CDD\|179959
NZ_CP053394.1\|WP_001916771.1\|338734_340573_+\|threonine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237050
NZ_CP053394.1\|WP_000750179.1\|342000_342861_+\|outer-membrane-protein	unknown	unknown	gnl\|CDD\|280099
NZ_CP053394.1\|WP_171407235.1\|343216_343648_+\|DUF1104-domain-containing-protein	unknown	unknown	gnl\|CDD\|368949
NZ_CP053394.1\|WP_001916777.1\|327542_327839_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053394.1\|WP_001916782.1\|322622_323216_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053394.1\|WP_001916772.1\|335935_338374_-\|pyruvate,-water-dikinase	unknown	unknown	gnl\|CDD\|235809
NZ_CP053394.1\|WP_001916776.1\|327864_329748_-\|motility-associated-factor-glycosyltransferase-family-protein	unknown	unknown	gnl\|CDD\|225324
NZ_CP053394.1\|WP_001916779.1\|325842_326673_-\|HrcA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|235174
NZ_CP053394.1\|WP_000010021.1\|329810_331355_-\|flagellin-B	unknown	unknown	gnl\|CDD\|237440
NZ_CP053394.1\|WP_001916781.1\|323374_325237_-\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
NZ_CP053394.1\|WP_001916767.1\|345834_347202_-\|L-serine-ammonia-lyase	unknown	unknown	gnl\|CDD\|273233
NZ_CP053394.1\|WP_001916778.1\|326883_327522_+\|class-II-aldolase/adducin-family-protein	unknown	unknown	gnl\|CDD\|180279
NZ_CP053394.1\|WP_001916774.1\|333723_334650_+\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|223803
NZ_CP053394.1\|WP_001916770.1\|340569_341181_+\|translation-initiation-factor-IF-3	unknown	unknown	gnl\|CDD\|129272
NZ_CP053394.1\|WP_001916768.1\|344062_344923_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053394.1\|WP_001916780.1\|325267_325843_-\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|184538
NZ_CP053394.1\|WP_001916775.1\|331520_333731_+\|type-I-DNA-topoisomerase	unknown	unknown	gnl\|CDD\|235516
NZ_CP053394.1\|WP_001125542.1\|341161_341356_+\|50S-ribosomal-protein-L35	unknown	unknown	gnl\|CDD\|234676
NZ_CP053394.1\|WP_001916766.1\|347201_348443_-\|HAAAP-family-serine/threonine-permease	unknown	unknown	gnl\|CDD\|273283

Protein	Function_ID	Function_description	E-value
NZ_CP053394.1\|WP_001264161.1\|341450_341801_+\|50S-ribosomal-protein-L20	gnl\|CDD\|179959	PRK05185, rplT, 50S ribosomal protein L20; Provisional.	6.59743e-61
NZ_CP053394.1\|WP_171407235.1\|343216_343648_+\|DUF1104-domain-containing-protein	gnl\|CDD\|368949	pfam06518, DUF1104, Protein of unknown function (DUF1104). This family consists of several hypothetical proteins of unknown function which appear to be found largely in Helicobacter pylori.	2.55194e-24
NZ_CP053394.1\|WP_000750179.1\|342000_342861_+\|outer-membrane-protein	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	2.57986e-49
NZ_CP053394.1\|WP_001916771.1\|338734_340573_+\|threonine--tRNA-ligase	gnl\|CDD\|237050	PRK12305, thrS, threonyl-tRNA synthetase; Reviewed.	0
NZ_CP053394.1\|WP_001916776.1\|327864_329748_-\|motility-associated-factor-glycosyltransferase-family-protein	gnl\|CDD\|225324	COG2604, COG2604, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP053394.1\|WP_001916779.1\|325842_326673_-\|HrcA-family-transcriptional-regulator	gnl\|CDD\|235174	PRK03911, PRK03911, HrcA family transcriptional regulator.	8.85155e-121
NZ_CP053394.1\|WP_001916781.1\|323374_325237_-\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NZ_CP053394.1\|WP_000010021.1\|329810_331355_-\|flagellin-B	gnl\|CDD\|237440	PRK13588, PRK13588, flagellin B; Provisional.	0
NZ_CP053394.1\|WP_001916767.1\|345834_347202_-\|L-serine-ammonia-lyase	gnl\|CDD\|273233	TIGR00720, hypothetical_protein_NEICINOT_00681, L-serine dehydratase, iron-sulfur-dependent, single chain form. This enzyme is also called serine deaminase and L-serine dehydratase 1. L-serine ammonia-lyase converts serine into pyruvate in the gluconeogenesis pathway from serine. This enzyme is comprised of a single chain in Escherichia coli, Mycobacterium tuberculosis, and several other species, but has separate alpha and beta chains in Bacillus subtilis and related species. The beta and alpha chains are homologous to the N-terminal and C-terminal regions, respectively, but are rather deeply branched in a UPGMA tree. This enzyme requires iron and dithiothreitol for activation in vitro, and is a predicted 4Fe-4S protein. Escherichia coli Pseudomonas aeruginosa have two copies of this protein. [Energy metabolism, Amino acids and amines, Energy metabolism, Glycolysis/gluconeogenesis].	0
NZ_CP053394.1\|WP_001916778.1\|326883_327522_+\|class-II-aldolase/adducin-family-protein	gnl\|CDD\|180279	PRK05834, PRK05834, hypothetical protein; Provisional.	1.71736e-109
NZ_CP053394.1\|WP_001916774.1\|333723_334650_+\|radical-SAM-protein	gnl\|CDD\|223803	COG0731, COG0731, Fe-S oxidoreductases [Energy production and conversion].	1.38063e-86
NZ_CP053394.1\|WP_001916770.1\|340569_341181_+\|translation-initiation-factor-IF-3	gnl\|CDD\|129272	TIGR00168, Translation_initiation_factor_IF-3, translation initiation factor IF-3. infC uses abnormal initiation codons such as AUA, AUC, and CUG which render its expression particularly sensitive to excess of its gene product IF-3 thereby regulating its own expression [Protein synthesis, Translation factors].	3.08152e-74
NZ_CP053394.1\|WP_001916772.1\|335935_338374_-\|pyruvate,-water-dikinase	gnl\|CDD\|235809	PRK06464, PRK06464, phosphoenolpyruvate synthase; Validated.	0
NZ_CP053394.1\|WP_001916780.1\|325267_325843_-\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|184538	PRK14149, PRK14149, heat shock protein GrpE; Provisional.	7.74468e-104
NZ_CP053394.1\|WP_001916775.1\|331520_333731_+\|type-I-DNA-topoisomerase	gnl\|CDD\|235516	PRK05582, PRK05582, type I DNA topoisomerase.	0
NZ_CP053394.1\|WP_001125542.1\|341161_341356_+\|50S-ribosomal-protein-L35	gnl\|CDD\|234676	PRK00172, rpmI, 50S ribosomal protein L35; Reviewed.	1.81419e-15
NZ_CP053394.1\|WP_001916766.1\|347201_348443_-\|HAAAP-family-serine/threonine-permease	gnl\|CDD\|273283	TIGR00814, membrane_transport_protein_YhjV, serine transporter. The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family- serine/threonine subfamily (TC 2.A.42.2) The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.//added GO terms, none avaialbelf or ser/thr specifically [SS 2/6/05] [Transport and binding proteins, Amino acids, peptides and amines].	1.20785e-176

>NZ_CP053394.1|WP_001916774.1|333723_334650_+|radical-SAM-protein
MAKENLPIVFGPVLSRRFGKSLGVDLSPSKKQCNYNCIYCELGKAKPIERMEEVIEVKTLISAIQNALNNLTTPIDVLTITANGEPTLYPHLLELIQSIKPFLKGVKTLILSNGSLFYEPKVQQALKEFDIVKFSLDAIDLKAFERVDKPYSKDINKILEGILSFSQIYQGQLVAEVLLIKGVNDSANNLKLIADFLKKINTARVDLSTIDRPSSFKAPKLSEDELLKCSLFFEGLCVSLPKRSTDQAKKLISCGIDELLALISRRPLSAEEAPLILDPNAFRHLETLLNHKQITIKKVGSLEFYCAF
>NZ_CP053394.1|WP_001916775.1|331520_333731_+|type-I-DNA-topoisomerase
MKHLIIVESPAKAKTIKNFLDKNYEVIASKGHVRDLSKFALGIKIDETGFTPNYVVDKDHKELVKQIIELSKKASITYIATDEDREGEAIGYHVACLIGGKLESYPRIVFHEITQNAILNALKTPRQIDMSKVNAQQARRFLDRIVGFKLSSLISSKITKGLSAGRVQSAALKLVIDREREIKAFKPLTYFTLDAYFEPHLEAQLISYKGNKLKAQELIDEKKAQEIKNELEKESYTISSIVKKSKKSPTPPPFMTSTLQQSASSLLGFSPTKTMSIAQKLYEGVATPQGVMGVITYMRTDSLNIAKEALEEARNKILKDYGKDYLPPKAKVYSSKNKNAQEAHEAIRPTSIILEPNALKDYLKPEELKLYTLIYKRFLASQMQDAFFESQSVVVACEKGEFKASGRKLLFDGYYKILGNDDKDKLLPNLKENDPIKLEKLESNAHVTEPPARYSEASLIKVLESLGIGRPSTYAPTISLLQNRDYIKVEKKQISALESTFKVIEVLEKHFEEIVDSKFSASLEEELDNIAQNKADYQQVLKDFYYPFMDKIEAGKKNIISQKVHEKTGQSCPKCGGELVKKNSRYGEFIACNNYPKCKYVKQTENANDGANQELCEKCGGEMVQKFSRNGAFLACNNYPECKNTKSLKNTPNANEIIEGVKCPECGGDIALKRSRKGSFYGCNNYPKCNFLSNHKPINKRCEKCHYLMSERIYRKKKAHECIQCKERVFLEEDDG
>NZ_CP053394.1|WP_000010021.1|329810_331355_-|flagellin-B
MSFRINTNIAALTSHAVGVQNNRDLSSSLEKLSSGLRINKAADDSSGMAIADSLRSQSANLGQAIRNANDAIGMVQTADKAMDEQIKILDTIKTKAVQAAQDGQTLESRRALQSDIQRLLEELDNIANTTSFNGQQMLSGSFSNKEFQIGAYSNTTVKASIGSTSSDKIGHVRMETSSFSGEGMLASAAAQNLTEVGLNFKQVNGVNDYKIETVRISTSAGTGIGALSEIINRFSNTLGVRASYNVMATGGTPVQSGTVRELTINGVEIGTVNDVHKNDADGRLTNAINSVKDRTGVEASLDIQGRINLHSIDGRAISVHAASASGQVFGGGNFAGISGTQHAVIGRLTLTRTDARDIIVSGVNFSHVGFHSAQGVAEYTVNLRAVRGIFDANVASAAGANANGAQAETNSQGIGAGVTSLKGAMIVMDMADSARTQLDKIRSDMGSVQMELVTTINNISVTQVNVKAAESQIRDVDFAEESANFSKYNILAQSGSFAMAQANAVQQNVLRLLQ
>NZ_CP053394.1|WP_001916776.1|327864_329748_-|motility-associated-factor-glycosyltransferase-family-protein
MDIYQKNLQALFKKDPLLFAQLKATKENKKYEVFLGNDSANFNLLDKETNTPLFEKSPLDSSLELYKNSEIYMLYPYLYYFGLGNGVFYRLLLGNENLKRLVVIEPEIEVIFIVLNLLDFSTEILENRLILLHASFCNYNMIASLFDMDKKSRLYARMYDLKLFNAYYERYSHQMIGINQHFTRALEHGAISVGNDAKDALIGIKQHAANLPEVIKSPSLVDFVSALKNRDTAIIVSTGPSLNKQLPLLKEIAPYATLFCIDASFPILARAGIKPDIVLSLERVDLTAKFYEETPLDFQEGVIFALTSIVHKRLIQAVKKGVKQFSFRPFGYTNLFDLHQYGYVGIGMSAANMAYELVVHSRFKRCVFIGQDLSFSQSGNSHASGAIYGDREIKPKKDKDKIFIEKYGGNGEVETTLVWKLFLEFFEKDIFNTPYKLEVINATEGGARIKGTKEMPFKEVCEKIDKSKPKPPINLIYPTQSEQAKNLKIARQKCEEIIQYANEKKTQVEEAFLKVAEFLEKVEKLHEEKKLDELDFKELENLSAEIDNIKELFDDKRFNSYFMDAIQSYIFHQELHIAEIVCKKTSNEDELRAKQLEYIYVHKYWLFSLAGGMDCVIEAIKMALKEW
>NZ_CP053394.1|WP_001916777.1|327542_327839_+|hypothetical-protein
MTINTHYTPNFTQLQTLNNINNDATIKDRNQVEQDLQQSNIQDGFSQDNAQNAPDFDRLQALNTINNDGEIKDKSQVAKNLVDGENIPEIYSSLDTYA
>NZ_CP053394.1|WP_001916778.1|326883_327522_+|class-II-aldolase/adducin-family-protein
MINMNTHTRGIDSNLIHSLKSISLSMFRKGFFGLYQGSISARIGANQFVINKRNAVFDQLNENTLLVLHDKIDYRWKEASLDSPIHASVYREFLDAKFIAYARPPYSLAYSLRHNRLLPRDYLGYRSLGEEISIFNPKDYDSWQERADTEILRQLQESKKYFVFIKGCGIFAYHRELSKLMEVFDLIENSCKVLRLGDLMDYCYNDDPRLSV
>NZ_CP053394.1|WP_001916779.1|325842_326673_-|HrcA-family-transcriptional-regulator
MVIDEIFQIMMLRRIKVGSDLNKKESLLDAFVKTYLQILEPISSKRLKELANLKISCATIRNYFQILSKEGMLYQAHSSGARLPTFKAFENYWQKSLRFEVLRVNEKRLKSASENFGLFTLLKKPSLERLERVIECEKRFLILDFLAFSCTLGYSVKMEKFLLELVGRSVKEVRSIAASVNALSLARQLERLEYSNTQITRFNLMGLKTLLNSPLFFDILGGKVLERLKKPLCFIEPDCMLVTRPIEFQNKRMQLLCVGKLECDYEGFFQTISKEE
>NZ_CP053394.1|WP_001916780.1|325267_325843_-|nucleotide-exchange-factor-GrpE
MKDEHNQEHDHLSQKEPESCKKACACNEQQGEEMQEASEKECEIKEDFELKYQEMREKYLRVHADFENVKKRLERDKSMALEYAYEKIALDLLPVIDALLGAHRSAIEVDKESALTKGLELTMEKLHEVLARHGIEGIECLEEFDPNFHNAIMQVKSEEKENGKIVQVLQQGYKYKGRVLRPAMVSIAKND
>NZ_CP053394.1|WP_001916781.1|323374_325237_-|molecular-chaperone-DnaK
MGKVIGIDLGTTNSAMAVYEGNEAKIIANKEGKNTTPSIVAFTDKGEILVGESAKRQAVTNPEKTIYSIKRIMGLMFNEDKAKEAEKRLPYKIVDRNGACAIEISGKVYTPQEISAKILMKLKEDAESYLGESVTEAVITVPAYFNDSQRKATKEAGTIAGLNVLRIINEPTSAALAYGLDKKESEKIMVYDLGGGTFDVTVLETGDNVVEVLATGGDAFLGGDDFDNRVIDFLASEFKSETGIEIKNDVMALQRLKEAAENAKKELSSAMETEINLPFITADATGPKHLVKKLTRAKFESLTEDLVEETISKIESVIKDAGLTKNEISEVVMVGGSTRIPKVQERVKAFINKELNKSVNPDEVVAVGASIQGGVLKGDVKDVLLLDVTPLSLGIETLGGVMTKVIDRGTTIPAKKSQVFSTAEDNQPAVSIMVLQGERELARDNKSLGKFDLQGIAPAPRGVPQIEVTFDIDANGILTVSAQDKNTGKSQEIKISGSSGLSDSEIEKMVKDAELHKEEDARKKEVIEARNHADSLAHQTQKSLDEHKANLNESDANEIQNAINALKECVKNDNATKTELEDKTKLLVQAAQKLGEAMANKNNAEQPKKKDDDVIDAEVE
>NZ_CP053394.1|WP_001916782.1|322622_323216_+|hypothetical-protein
MKKIEWNEEQRKAFQDLLREFVASIDAKAQEGKQTGKTPTNPKYASYQRGLNKFLAPWGYACKISPGSHGRLSYKPSIAFCRQDILGEGFVNREKPTPTKGFYIWFAYYWCEHYREHENVKKFDLCIGRSREKDGEKECQKCLAYDKIVIENACYRKLYDDLESDLESITDYFLHLINEFNQIPTACFELEPSSASH
>NZ_CP053394.1|WP_001916772.1|335935_338374_-|pyruvate,-water-dikinase
MRYIKFFKELNNKNVNLVGGKNASIGEMFQELVPIGIKVPDGFAITSEAYWYLLEQGGAKQKIIELLENVDATEIDVLKIRSKQIRELIFGTPFPSDLRDEIFQAYEILSQQYNMKEADVAVRSSATAEDLPDASFAGQQDTYLNIKGKTELIHYIKSCLASLFTDRAISYRASRGFDHLKVALSVGVQKMVRADKGSAGVMFSIDTETGFKDAVFITSAWGLGENVVGGTINPDEFYVFKPTLEQNKRPIIKRQLGNKTQKMVYAPRGSEHPTRNIKTTKKEWQSFSLSDEDVLILAKYAIEIEKHYSKEAKQYRPMDIEWAKDGDSGEIFIVQARPETVQSQKTKEESQVFEKFKFKNPNEKKEIILQGRAIGSKIGSGKVRIINDLEHMNSFKEGEILVTDNTDPDWEPCMKKASAVITNRGGRTCHAAIVAREIGVPAIVGVSGATDSLYTGMEITVSCAEGEEGYVYAGIYEHEIERVELSNMQETQTKIYINIGNPEKAFSFSQLPNHGVGLARMEMIILNQIKAHPLALVDLHHKKSVKEKNEIENLMAGYANPKDFFVKKIAEGIGMISAAFYPKPVIVRTSDFKSNEYMRMLGGSSYEPNEENPMLGYRGASRYYSESYNEAFSWECEALALVREEMGLTNMKVMIPFLRTIEEGKKVLEILRKNNLESGKNGLEIYIMCELPVNVILADDFLSLFDGFSIGSNDLTQLTLGVDRDSELVSHVFDERNEAMLKMFKKAIEACKRHNKYCGICGQAPSDYPEVTEFLVKEGITSISLNPDSVIPTWNAVAKLEKELKDHGLTAH
>NZ_CP053394.1|WP_001916771.1|338734_340573_+|threonine--tRNA-ligase
MSAELIAVYKDEQIIDLESAKVLGLSDGIKALKGTEPIYFDDSPLALEVIRHSCAHLLAQSLKALYPDAKFFVGPVVEEGFYYDFKTASKISEEDLPKIEAKMKEFAKSKLAITKEVLTREQALERFKGDELKHAVMSKISGDIFGVYKQGEFEDLCKGPHLPNTRFLNHFKLTKLAGAYLGGDENNEMLIRIYGIAFATKEGLKDYLFQIEEAKKRDHRKLGVELGLFSFDDEIGAGLPLWLPKGARLRKRIEDLLSKALLLRGYEPVKGPEILKSDVWKISGHYDNYKENMYFTTIDEQEYGIKPMNCVGHIKVYQSALHSYRDLPLRFYEYGVVHRHEKSGVLHGLLRVREFTQDDAHIFCSFEQIQSEVSAILDFTHKIMQAFGFSYEMELSTRPTKSIGDDEVWEKATNALKEALKEHRIDYKIDEGGGAFYGPKIDIKITDALRRKWQCGTIQVDMNLPERFKLAFTNECNHAEQPVMIHRAILGSFERFIAILSEHFGGNFPFFVAPTQIALIPINEEHHVFALKLKEALKKRDIFVEVLDKNDSLNKKVRLAEKQKIPMILVLGNEEVETEILSIRDREKQAQYKMPLKEFLNMVESKMQEVSF
>NZ_CP053394.1|WP_001916770.1|340569_341181_+|translation-initiation-factor-IF-3
MSRNEVLLNGDINFKEVRCVGDDGEVYGIISSKEAFNIAQNLGLDLVLISASAKPPVCKVMDYNKFRYQNEKKIKEAKKKQKQIEIKEIKLSTQIAQNDINYKVKHAREFIESNKHVKFKVVLKGRESQNSKAGLDVLFRVQTMMQDLANPEKEPKTEGRFVSWMFVPKAKEAPKNEKKTKENNPPFNRINLMKGENHAKNED
>NZ_CP053394.1|WP_001125542.1|341161_341356_+|50S-ribosomal-protein-L35
MPKMKTNRGASKRFKVKKNLIKRGSAFKSHILTKKSPKRKANLNAPKHVHHTNAHSVMSLLCRA
>NZ_CP053394.1|WP_001264161.1|341450_341801_+|50S-ribosomal-protein-L20
MRVKTGVVRRRRHKKVLKLARGFYSGRRKHFRKAKEQLERSMYYAFRDRKQKKREFRSLWVVRINAACRMHETSYSRFMHALKVANIELDRKVLADMAMNDMQAFKSVLESVKEHL
>NZ_CP053394.1|WP_000750179.1|342000_342861_+|outer-membrane-protein
MKKSVIVGAISLAMTSLLSAETPKQEKAIKTSPTKKGERNAAFIGIDYQLGMLSTTAQNCSHGNCNGNQSGAYGSNTPNMPTASNPTGGLTHGALGTRGYKGLSNQQYAINGFGFVVGYKHFFKKAPQFGMRYYGFFDFASSYYKYYTYNDYGMRDARKGSQSFMFGYGAGTDVLFNPAIFNRENLHFGFFLGVAIGGTSWGPTNYYFKDLAEEYRGSFHPSNFQVLVNGGIRLGTKHQGFEIGLKIQTIRNNYYTASADNVPEGVTYKFTFHRPYAFYWRYIVSF
>NZ_CP053394.1|WP_171407235.1|343216_343648_+|DUF1104-domain-containing-protein
MKKLAVSLLFTGTFLGLFLNASDFKSMDNKQLLEQAGKVAPSEVPEFRAEVNKRLQAMKEEERKNYKADFKKAMDKNLASLSQEDRNKRKKEILEVIANKKKTMTMKEYREEGLDLHDCTCEGPFHDHEKKGKKGKKPSHHKH
>NZ_CP053394.1|WP_001916768.1|344062_344923_+|hypothetical-protein
MKRILFFLAATTFLLRAETDSATINTTVDPNVMFSESSTGNVKKDRKRVLKSMVNLEKERVKNFNQYSETKMSKGDLSAFGAFFKGSLESCVEQKVCYYEHKDGKVSFVVNDREKFYKHVLKDLGTELSLPLFNWLYKGSDFGALHEQFGDMYDGYIKYLISMVRTSQKEKARKVDAVVLKKMEEQAEKDTKAAFQKRSSGELESHTDSPEFISSSKRTQNASNSDLDSMTNANTLKETASKEPETSSKKEKKPKKKRRLSKKEKQQQALQQEFEKQISDSSKSEK
>NZ_CP053394.1|WP_001916767.1|345834_347202_-|L-serine-ammonia-lyase
MASFSILSIFKIGVGPSSSHTIGPMEAGARFCGLLKGILEQVERVQITLHGSLALTGKGHLSDEAVLIGLHGIYANELDITTKKALLHEALENKVLKLANQHHIPFDYAKDLIFDNKPLARHQNALILKAFNAKNEVLKEETYYSVGGGFVYTEKELDNLSKESENESVAYDFSSAKELLELCQKHQKSIAEIVRLRENALKNHPDATMAKIYHAMLECYHNGANSKERYLPGSLKVTRLAPSVKTRLEKHPTSGKDPLALIDYISLYARAIAEENASGGKVVTAPTNGACAVVPSVLLYAKNHLFENLSQKAINDFLLTSAAIGYLYKKNASLSGAEAGCQAEIGVASSMAAGGLAYLCQATTQQVLIASEIAMEHHLGLTCDPVGGLVQIPCIERNVLGAIKAISASKLALEDEYKPKVSLDEVIATMYATGKDMNEKYKETSLGGLAKTLKC
>NZ_CP053394.1|WP_001916766.1|347201_348443_-|HAAAP-family-serine/threonine-permease
MAQEKAVPRDPKKLNLFDLRWIASLFGTAVGAGILFLPIRAGGHGIWAIVVMSAIIFPLTYLGHRALAYFIGSKDKEDITMVVRSHFGAQWGFLITLLYFLAIYPICLAYGVGITNVFDHFFTNQLHLAPFHRGLLAVALVSLMMLVMVFNATIVTRICNALVYPLCLILLLFSLYLIPYWQGGNLFVVPSFKEFVLAIWLTLPVLVFSFNHSPIISTFTQNVGKEYGAFKEYKLNQIELGTSLMLLGFVMFFVFSCVMCLSADDFAKAREQNIPILSYFANTLNNPLINYAGPVVAFLAIFSSFFGHYYGAKEGLEGIIIQSLKLKKASKTLSISVTIFLWLTITLVAYINPNILDFIENLGGPIIALILFVMPMIAFYSVSSLKRFRNFKVDIFVFVFGSLTALSVFLGLF

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Crispr_ID: NZ_CP053394_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053394_3

1118483-1118634

Orphan

I-B

Consensus_repeat	Method
TTTGAAAACAGCAGTTTCAATCAAGGCACTTATAATTTTAATAACA	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP053394_3

>merge|NZ_CP053394|3|1118483-1118634|PILER-CR
AGCTTCAATCAAGGCACTTATAATTTTAGTAACAGCGCAAGTTCAAGCTTTGATAATAGTAGTTTCAATCAAGGGACTTATCACTTTAATAGCGCCCAATCCACTTTTGAAAACAGCAATTTCAATCAAGGCACTTATAATTTTAATGACAA

>NZ_CP053394|3|1|1118483-1118634|PILER-CR
AGCTTCAATCAAGGCACTTATAATTTTAGTAACAGCGCAAGTTCAAGC	TTTGATAATAGTAG
TTTCAATCAAGGGACTTATCACTTTAATAGCGCCCAATCCACTTTTGA	AAACAGCAATTTC
AATCAAGGCACTTATAATTTTAATGACAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053394.1\|WP_171407224.1\|1111678_1111825_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053394.1\|WP_001917291.1\|1133205_1133808_+\|6-pyruvoyl-tetrahydropterin-synthase-family-protein	unknown	unknown	gnl\|CDD\|223792
NZ_CP053394.1\|WP_001916699.1\|1112001_1112433_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376519
NZ_CP053394.1\|WP_001916700.1\|1112437_1115695_-\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NZ_CP053394.1\|WP_001916696.1\|1107605_1109150_-\|outer-membrane-beta-barrel-protein-HofG	unknown	unknown	gnl\|CDD\|334957
NZ_CP053394.1\|WP_000041790.1\|1132544_1133204_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053394.1\|WP_000722448.1\|1131744_1132548_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP053394.1\|WP_001917292.1\|1133810_1134566_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|223675
NZ_CP053394.1\|WP_001916692.1\|1101012_1103040_+\|ATP-dependent-helicase	unknown	unknown	gnl\|CDD\|223288
NZ_CP053394.1\|WP_000426949.1\|1130278_1130821_+\|GTP-cyclohydrolase-I-FolE	unknown	unknown	gnl\|CDD\|129173
NZ_CP053394.1\|WP_001917288.1\|1128213_1129359_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|272903
NZ_CP053394.1\|WP_171407245.1\|1129327_1130278_+\|zinc-metalloprotease-HtpX	unknown	unknown	gnl\|CDD\|235081
NZ_CP053394.1\|WP_001917287.1\|1127267_1127474_-\|4-oxalocrotonate-tautomerase-family-protein	unknown	unknown	gnl\|CDD\|129125
NZ_CP053394.1\|WP_001916691.1\|1099869_1101009_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|223897
NZ_CP053394.1\|WP_001099624.1\|1127635_1128217_+\|recombination-protein-RecR	unknown	unknown	gnl\|CDD\|273176
NZ_CP053394.1\|WP_001917290.1\|1130836_1131748_+\|polyprenyl-synthetase-family-protein	unknown	unknown	gnl\|CDD\|223220
NZ_CP053394.1\|WP_001916701.1\|1116629_1117628_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|273675
NZ_CP053394.1\|WP_001240236.1\|1115793_1116486_-\|Bax-inhibitor-1/YccA-family-protein	unknown	unknown	gnl\|CDD\|198414
NZ_CP053394.1\|WP_001916694.1\|1103581_1105120_+\|Hop-family-adhesin-AlpA	unknown	unknown	gnl\|CDD\|280099
NZ_CP053394.1\|WP_001916695.1\|1105141_1106761_+\|Hop-family-adhesin-AlpB	unknown	unknown	gnl\|CDD\|280099

Protein	Function_ID	Function_description	E-value
NZ_CP053394.1\|WP_001917291.1\|1133205_1133808_+\|6-pyruvoyl-tetrahydropterin-synthase-family-protein	gnl\|CDD\|223792	COG0720, COG0720, 6-pyruvoyl-tetrahydropterin synthase [Coenzyme metabolism].	8.24992e-21
NZ_CP053394.1\|WP_001916699.1\|1112001_1112433_-\|hypothetical-protein	gnl\|CDD\|376519	pfam01300, Sua5_yciO_yrdC, Telomere recombination. This domain has been shown to bind preferentially to dsRNA. The domain is found in SUA5 as well as HypF and YrdC. It has also been shown to be required for telomere recombniation in yeast.	8.54502e-05
NZ_CP053394.1\|WP_001240236.1\|1115793_1116486_-\|Bax-inhibitor-1/YccA-family-protein	gnl\|CDD\|198414	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins. This family is comprised of bacterial relatives of the mammalian members of the BAX inhibitor (BI)-1 like family of small transmembrane proteins, which have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well-characterized oncogene, or by inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. In plants, BI-1 like proteins play a role in pathogen resistance. A characterized prokaryotic member, Escherichia coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.	2.86566e-52
NZ_CP053394.1\|WP_001916700.1\|1112437_1115695_-\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NZ_CP053394.1\|WP_001916696.1\|1107605_1109150_-\|outer-membrane-beta-barrel-protein-HofG	gnl\|CDD\|334957	pfam02521, HP_OMP_2, Putative outer membrane protein. This family consists of putative outer membrane proteins from Helicobacter pylori (campylobacter pylori).	3.73154e-178
NZ_CP053394.1\|WP_000722448.1\|1131744_1132548_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	5.23927e-126
NZ_CP053394.1\|WP_001917292.1\|1133810_1134566_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|223675	COG0602, NrdG, Organic radical activating enzymes [Posttranslational modification, protein turnover, chaperones].	2.29645e-44
NZ_CP053394.1\|WP_001916692.1\|1101012_1103040_+\|ATP-dependent-helicase	gnl\|CDD\|223288	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair].	2.69851e-134
NZ_CP053394.1\|WP_000426949.1\|1130278_1130821_+\|GTP-cyclohydrolase-I-FolE	gnl\|CDD\|129173	TIGR00063, GTP_cyclohydrolase_1, GTP cyclohydrolase I. alternate names: Punch (Drosophila),GTP cyclohydrolase I (EC 3.5.4.16) catalyzes the biosynthesis of formic acid and dihydroneopterin triphosphate from GTP. This reaction is the first step in the biosynthesis of tetrahydrofolate in prokaryotes, of tetrahydrobiopterin in vertebrates, and of pteridine-containing pigments in insects. [Biosynthesis of cofactors, prosthetic groups, and carriers, Folic acid].	1.19934e-105
NZ_CP053394.1\|WP_001917288.1\|1128213_1129359_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|272903	TIGR00094, tRNA_pseudouridine_synthase_D, tRNA pseudouridine synthase, TruD family. an EGAD loading error caused one member to be called surE, but that's an adjacent gene. MJ11364 is a strong partial match from 50 to 230 aa. [Protein synthesis, tRNA and rRNA base modification].	1.95955e-142
NZ_CP053394.1\|WP_171407245.1\|1129327_1130278_+\|zinc-metalloprotease-HtpX	gnl\|CDD\|235081	PRK02870, PRK02870, heat shock protein HtpX; Provisional.	0
NZ_CP053394.1\|WP_001917287.1\|1127267_1127474_-\|4-oxalocrotonate-tautomerase-family-protein	gnl\|CDD\|129125	TIGR00013, Probable_tautomerase_K2, 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function. [Energy metabolism, Other].	7.52114e-26
NZ_CP053394.1\|WP_001099624.1\|1127635_1128217_+\|recombination-protein-RecR	gnl\|CDD\|273176	TIGR00615, Recombination_protein_RecR, recombination protein RecR. All proteins in this family for which functions are known are involved in the initiation of recombination and recombinational repair. RecF is also required. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair].	9.68647e-98
NZ_CP053394.1\|WP_001917290.1\|1130836_1131748_+\|polyprenyl-synthetase-family-protein	gnl\|CDD\|223220	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism].	1.23112e-76
NZ_CP053394.1\|WP_001916701.1\|1116629_1117628_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|273675	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I. This model represents glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilize NAD (EC 1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In some species, NAD- and NADP- utilizing forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively. Two Pfam models cover the two functional domains of this protein; pfam00044 represents the N-terminal NAD(P)-binding domain and pfam02800 represents the C-terminal catalytic domain. An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria. This enzyme is described by TIGR001532. These sequences generally score between trusted and noise to this GAPDH model due to the close evolutionary relationship. There exists the possiblity that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to posess a limited E4PD activity as well as a robust GAPDH activity). There are a great number of sequences in the databases which score between trusted and noise to this model, nearly all of them due to fragmentary sequences. It seems that study of this gene has been carried out in many species utilizing PCR probes which exclude the extreme ends of the consenses used to define this model. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. [Energy metabolism, Glycolysis/gluconeogenesis].	7.40094e-161
NZ_CP053394.1\|WP_001916691.1\|1099869_1101009_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|223897	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair].	3.71306e-53
NZ_CP053394.1\|WP_001916694.1\|1103581_1105120_+\|Hop-family-adhesin-AlpA	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	1.19301e-54
NZ_CP053394.1\|WP_001916695.1\|1105141_1106761_+\|Hop-family-adhesin-AlpB	gnl\|CDD\|280099	pfam01856, HP_OMP, Helicobacter outer membrane protein. This family seems confined to Helicobacter. It is predicted to be an outer membrane protein based on its pattern of alternating hydrophobic amino acids similar to porins.	2.28259e-53

>NZ_CP053394.1|WP_001916701.1|1116629_1117628_+|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MKIFINGFGRIGRCVLRAILERNDTNPKLEVIGINDPANWEILAYLLEHDSVHGLLFKEVHYSNGKLIIGSLEIPVFNSIKDLKGVDVIIECSGKFLEPKTLENYLLLGAKKVLLSAPFMGEYDEKQYPTLVYGVNHSLYQNQAIVSNASCTTNAIAPICAILDKAFNIKEGMLTTIHSYTSDQKLIDLAHPLDKRRSRAAASNIIPTTTKAALALHKVLPNLKNKMHGHSVRVPSLDVSMIDLSLFLEKKAFKDPINDLLIEASKGVLKGVLEIDLKERVSSDFISNPHSVIIAPDLTFTLENMVKIMGWYDNEWGYSNRLVDMAQFMYHY
>NZ_CP053394.1|WP_001240236.1|1115793_1116486_-|Bax-inhibitor-1/YccA-family-protein
MALYDRANSHNAYAEDSLLHESELVGFVKTTYKFFAGSLLLATIGALLGLMNFQAVVQYKWVFFIAEIAAFFGLMFSKSKPGLNLFMLFAFTSLSGVTLVPLLGMVIAKAGLGAIWQALGMTTIVFGLMSVYALKTKNDLANMGKMLFIALIVVVVCSLINLFLGSPMFQVVIAGASAILFSLYIAYDTQNIVKGMYDSPIDAAVSLYLDFLNVFISILQIIGIFSDRDK
>NZ_CP053394.1|WP_001916700.1|1112437_1115695_-|carbamoyl-phosphate-synthase-large-subunit
MPKRTDISSILLIGSGPIVIGQACEFDYSGTQSCKTLKSLGYRVILINSNPATVMTDPEFSHKTYIQPITGENIAAIIKKEKIDAILPTMGGQTALNAVMQMHQKGMLEGVELLGAKIEAIKKGEDRQAFKEAMLKIGMDLPKGRYAYSELEALEAINEIGFPAIIRASFTLAGGGSGVAYNIEEFQELAKNALDASPINEILIEESLLGWKEYEMEVIRDSKDNCIIVCCIENIDPMGVHTGDSITIAPSLTLTDKEYQRMRDASFAILREIGVDTGGSNVQFAIHPETLRMVVIEMNPRVSRSSALASKATGFPIAKVATMLAVGFSLDEIQNDITNTPASFEPSLDYIVVKIPRFAFEKFAGVSSTLGTSMKSIGEVMAIGGNFLEALQKALCSLENNWLGFESLSKDLEMIKKEIRRPNFKRLLYIADAFRLGVSVDEVFELCQIDRWFLSQIQKLVKAEESINSSVLTDAKKLRELKNLGFSDARIAAKIKENDNLEVSPFEVELARMHLQIAPHFEEVDTCAAEFLSLTPYLYSTYAPNPLPPIENKQEKQEKKILIIGSGPNRIGQGIEFDYCCVHASFALKDLNIKSVMLNCNPETVSTDYDTSDTLYFEPIHFECVKSIIQRERVDGIIVHFGGQTPLKLAKDLAKMQAPIIGTPFKVIDIAEDREKFSLFLKELDIKQPENGMAKSIDEAYSIANVIGFPIIVRPSYVLGGQHMQILENIEELRHYLESVTHALEISPKNPLLIDKFLEKAVELDVDVICDKKEVYIAGILQHIEEAGIHSGDSACFIPSTLNPEILDEIERVSAKIALHLGVVGLLNIQFAVYENSLYLIEVNPRASRTVPFLSKALGVPLAKVATRVMVLEDLKEALKFYDKKNIVEYSKGVYKPKMPHFVALKEAVFPFNKLYGSDLILGPEMKSTGEVMGIARSLGLAFFKAQTACFNPIKNKGLIFVSIKDKDKEEACVLMKRLVQLGFELCATEGTHKALEKAGVKSLKVLKISEGRPNIMDLMMNGEISMAINTSDHKSQDDAKLIRTSVLKNHVSYFTTLSAIEVLLLALEESSQKDELLALQDYLK
>NZ_CP053394.1|WP_001916699.1|1112001_1112433_-|hypothetical-protein
MALVYLVQSDTTIGLLSKDSEKLNALKKRPKNQSVLIESADFSTLKSLVRAPNAFKNLIRRSAKTTFIYPNSKAVRVIRGRHGDFLKRFKTLYSTSANLTQCAYDKEIASNLADAIVSDERGLFESSSSKIFRLYKDKKVRIR
>NZ_CP053394.1|WP_171407224.1|1111678_1111825_-|hypothetical-protein
MNDKRFRKYCSFSIFLSLLGMFELEAKEEEKEEKKTERKKKERPTHSR
>NZ_CP053394.1|WP_001916696.1|1107605_1109150_-|outer-membrane-beta-barrel-protein-HofG
MKQEKYFLTSSLSLLSFLLCPAEAFDYRFSGRVENFSKIGFNNSQINTKKGIYPTESFIDIVTLAQVKVNLLPKGTENHRLSVSLGGAIAAIPYDKTKNYINQANGKVFGSIVENFIGGYHGYFFNKYLGPAYAGTSQSASYHARPYVVDTAFLRYDYKDVFGFKAGRYEANIDFMSGSNQGWEVYYQPYKTETQRLRFWWWSSFGRGLAFNSWIYEFFATVPYLKKGGNPNNSNDFINYGWHGITTTYSYKGLDAQFFYYFAPKTYNAPGFKLVYDTNRSFENVGFRSQSMIMTTFPLYYRGWYNPETNTYSLEDSTPHGSLLGRNGVTLNIRQVFWWDNFNWSIGFYNTFGNSDAFLGSHTMPRGNNTSYIANEISITTRHAGMIGYDFWDNTAYDGLADAITNANTFTFYTSVGGIHKRFAWHVFGRVSHANKNALGQVGRANEYSVQLNASYAFTESVLLNFRITYYGARINKGYQAGYFGAPKFNNPDGDFNANYQDRSYMMTNLTLKF
>NZ_CP053394.1|WP_001916695.1|1105141_1106761_+|Hop-family-adhesin-AlpB
MKQNLKPFKMIKENLMTQSQKVRFLAPLSLALSLSFNPVGAEEDGGFMTFGYELGQVVQQVKNPGKIKAEELAGLLNSNTTNNTNINIAGTGGNVAGTLGNLFMNQLGNLIDLYPTLNTSNIHLCGATNNGSSGAGATTTATTATTATTGSTSNSSCFQGNLSLYNEMVSSIKTLSQDLKNNIFQGNNNTTSTNLSNQLSELNTASVYLTYMNSFLNANNQAGGIFQNNTNQAYGNGVTAQQIAYVLKQASITMGPSGDSGAAGAFLDAALAQHVFNSANAGNDLSAKEFTSLVQNIVNTSQNALTLANNANISNSTGYQVSYGGNIDQARSTQLLNNTTNTLAKVAALNNELKANPWLGNFAAGNSSQVNAFNGFITKIGYKQFFGENKNVGLRYYGFFSYNGAGVGNGPTYNQVNLLTYGVGTDVLYNVFSRSFGSRSLNAGFFGGIQLAGDTYISTLRNSPQLANRPTATKFQFLFDLGLRMNFGILKKDLKSHNQHSIEIGVQIPTIYNTYYKAGGAEVKYFRPYSVYWVYGYAF
>NZ_CP053394.1|WP_001916694.1|1103581_1105120_+|Hop-family-adhesin-AlpA
MIKKNRTLFLSLALCASISYAEDDGGFFTVGYQLGQVMQDVQNPGGTKRDELARELNADVTNNILNNNTGGNVAGALSNAFSQYLYSLLGAYPTKLNSKDVSANALLSGAVGSGTCAAAGTAGGNSLNTQSACTAAGYYWLPSLTDRILSTIGSQTNYGTNTNFPNMQQQLTYLNAANVFFNAMNKALEAKNGTSGATGSGGQTYSQQAIKYLQGQQTILNNAANLLKQDELLLEAFNSAVAANIGNKEFNSAVFTGLVQGIIDQSQSVYNELTKNTISGSAVNSAEININQANAVQGRASQLPNALYNVQVTLDKINALNNQVRSMPYLPQFRAGNSRSTNILNGFYTKIGYKQFFGKKRNIGLRYYGFFSYNGASVGFRSTQNNVGLYTYGVGTDVLYNIFSRSYQNRSVDMGFFSGIQLAGETFQSTLRDDPNVKLHGKINNTHFQFLFDFGMRMNFGKLDGKSNRHNQHTVEFGVVVPTIYNTYYKSAGTTVKYFRPYSVYWSYGYSF
>NZ_CP053394.1|WP_001916692.1|1101012_1103040_+|ATP-dependent-helicase
MLETLQLNPEQLKAVKALKGYNLVIASAGTGKTSTIVGRILYLLDNGIKPEEILLLTFTNKASNEMIARVAKYFKSSSKIEAGTFHAVAYRYLKEHYPNLSLKQPKELRKLLESIVDTKNAIDDDKKPYTSQHLYALYSLYTNALKQEDFSAWLSHKSPEHTPYAALYENILEEFENTKKKHNYIDYNDLLLLFKKAMLERPSPYKEVLCDEFQDTNPLQESILDAINPPSLFCVGDYDQSIYAFNGADISIISNFTQKYKNARVFTLTKNYRSSKEILDLANQVIQRNERIYPKNLEVVKSGKFNKPTLLNYNDNIAQCQDIAKRIVMRKDFKEVAVIFRNNASADQLEAALRSYNVPSKRKGSASFFESKEVALALDICALLFNPKDIMAAIHILSYISDIGSNTAKDIHEALMLLGNGDLKSALIQPNKEAKIYTKKKEITSMGLFEEIFALENSSRFNSVIDKAFYSHPVLMHPKISLNGAKTLSDFFILYTKAPTHSPSALIKHILESAFFQTFKTRLLKERSKNKDGSYNEFKKLQAQKRFNEKMDLLSSLAKNYQNLGRFLNGTLIGSNEATQGCGVNLLSVHASKGLEFKDVYIIDLMEGRFPNHKLMNTGGGIEEERRLFYVAITRAKENLWLSYAKNELRENAKPKEHKPSVFLYEAGLLKPDLK
>NZ_CP053394.1|WP_001916691.1|1099869_1101009_+|class-I-SAM-dependent-methyltransferase
MHQLDIKTLGQVFTPKKIVDFMLTLKHNQGSVLEPSAGDGSFLKRLKKAVGIEIDPKICPKNALCMDFFDYPLENQFDTIIGNPPYVKHKDIAPSAKEKLHYSLFDERSNLYLFFIEKAIRHLKPKGELIFITPRDFLKSTSSVKLNEWIYKEGTITHFFELGDQKIFPNAMPNCVIFRFCKGNFSRITNDGLQFLCKKGILYFLNQSYTQKLSEVFKVKVGAVSGCDKIFKNEKYGNLEFVTSITKRTNVLEKMVFVNKPNDYLLQHKDSLMQRKIKKFNENNWYKWGRMHHISPKKRIYVNTKTRQKNPFFIHQCPNYDGSILALFPYNQNLDLQNLCDKLNAINWQELGFVCDGRFLFSQRSLENALLPKDFLNLG
>NZ_CP053394.1|WP_001917287.1|1127267_1127474_-|4-oxalocrotonate-tautomerase-family-protein
MPFINIKLVPENGGPTSEQKQQLIEGVSDLMVKVLNKNKASIVVIIDEVDSNNYGLGGESVHHLRQKN
>NZ_CP053394.1|WP_001099624.1|1127635_1128217_+|recombination-protein-RecR
MNTYKNSLNHFLNLVDCLEKIPNVGKKSAFKMAYHLGLENPYLALKITHALENALENLKTCTSCNALSESEVCEICSDESRQNSQLCMVLHPRDVFILEDLKDFLGRYYVLNSIEEVDFNALEKRLIEENIKEIIFAFPPTLANDSLMLYIEDKLQHFHLTFTKIAQGVPTGVNFENIDSVSLSRAFNSRIKA
>NZ_CP053394.1|WP_001917288.1|1128213_1129359_+|tRNA-pseudouridine(13)-synthase-TruD
MNLNFMPLLHAYNHASIDFHFNSSARDFCVHEVPLYEFSNTGEHAVIQVRKSGLSTLEMLQIFSQILGVKIAELGYAGLKDKNALTTQFISLPKKYAPLLEKNTSNFQERNLKILSLNYHHNKIKLGHLKGNRFFMRFKKMTPLNAQKTKQVLEQIAQFGMPNYFGSQRFGKFNDNHKEGLKILQNQTKFAHQKLNAFLISSYQSYLFNALLSKRLEISKIISAFSLKENLEFFKQKNLSVDSNTLKALKNQAHPFKILEGDVMCHYPYGKFFDALELEKEGERFLKKEAVPTGLLDGKKALYAKNLSLEIEKEFQHNLLNSHAKTLGSRRFFWVFAENVTSQYIKEKAQFELGFYLPKGSYASALLKEIKHEKGENNDEF
>NZ_CP053394.1|WP_171407245.1|1129327_1130278_+|zinc-metalloprotease-HtpX
MRKEKIMTNFEKIIAQNRLKTNAVLATYCVIFAFIGLLVDVIRINANDLGIALFKLMTFQIFPTITIIMFLAAFVVIVICIQNFSSIMLSGDEYKLIDKSKVLSSKENQIHRLLLELLEEANLHFEPKLYIINAPYMNAFASGWNESNSLIALTSALIERLDKDELKAVIAHELSHIRHNDIRLTMCVGILSNIMLLVANFSVYFFMGNRKNSGANLARMILLFLQIVLPFLTLILQMYLSRTREYMADSGAAFLMHDNKPMIRALQKISNDYANNDYKGIDQNSTRSAAYLFNAEMFSTHPSIKNRIQSLRRRVI
>NZ_CP053394.1|WP_000426949.1|1130278_1130821_+|GTP-cyclohydrolase-I-FolE
MENFFNQFFENIGEDKNREGLKETPKRVQELWKFLYKGYKEDPKVALKSAYFQGVCDEMIVAQNIEFYSTCEHHLLPFLGNISLGYIPKEKIVGISAIAKLIEIYSKRLQIQERLTTQIAETFDEIIEPRGVIVVCEAKHLCMSMQGVQKQNAIIKTSVLRGLFKKDPKTRAEFMQLLKS
>NZ_CP053394.1|WP_001917290.1|1130836_1131748_+|polyprenyl-synthetase-family-protein
MNNPNLSFYYNECERFESFLNHHHLHLESFHPYLEKAFFEMVLNGGKRFRPKLFLAVLCALVGQKDYSNQQTEYFKIALSIECLHTYSLIHDDLPCMDNAALRRNHPTLHAKYDETTAVLIGDALNTYSFELLSSSLLESHIIVELIKILSVNGGIKGMVLGQALDCYFENTPLNLEQLTFLHEHKTAKLISASLMMGLVASGIKDEELFKWLQDFGLKMGLCFQVLDDIIDVTQDEKESGKTTHLDSAKNSFVNLLGLEKASGYAQTLKTDVLNDLNLLKPAYPLLQENLNALLNTLFKGKT
>NZ_CP053394.1|WP_000722448.1|1131744_1132548_+|5'/3'-nucleotidase-SurE
MKKILLTNDDGYHAKGIKALEQALEEMAEIYVVAPKHEKSACSQCITITAPLRAEKIKGKEGRHYRIDDGTPSDCVYLAINELFKHVCFDLVISGINLGSNMGEDTIYSGTVAGAIEGTIQGVPSIAISQILSNKNKNTPLSFDLAQKIIQDLVQNIFTKGYPLKGRKLLNVNVPNCSLQEYKGERITPKGYRLYKKEVHKRTDPKNESYFWLGLHPLEWQKRENEDRLSDFDAIASNHASITPLNLDLTSYDDLKSLESWHEGMLK
>NZ_CP053394.1|WP_000041790.1|1132544_1133204_+|hypothetical-protein
MSKNHRLAFLGLIVGVFFFFNACQHRLHMGYYSEVTGDYLFNYNSTIVVAYDRSDAMTSYYINVIVYELQKLGFYNVFTQAEFPLDKAKNVIYARIVRNISAVPFYQYNYQLIDQVNKPCYFLGGQFYCSQTPTDYYAINGFSEQILMSANSHFILDWYDVVLQKRVLYVDGSVSGRTCGYQMLYRDLIKSTIKRIDFNRPERYYYNLRLPLYQPCYRQ
>NZ_CP053394.1|WP_001917291.1|1133205_1133808_+|6-pyruvoyl-tetrahydropterin-synthase-family-protein
MVIRRLYKFCASHVVRNCSSLKCAQNIHGHNYEVEVFIETNRLDSANMALDFGLMQQEMQVFIESFDHAHHFWDKESDEFQRFIENHCVRYVKCSFNLSAEGYALMFLYYLTRILQKSVFSNNEGELKVSSVRVHETKNGYAESFLKDLENPHFKSLVHNYCVSFSQGIQNLWHDKDFFNKIISDKKQCFFHAKPLHQIP
>NZ_CP053394.1|WP_001917292.1|1133810_1134566_+|7-carboxy-7-deazaguanine-synthase-QueE
MKLPVVESFFSLQGEGKRIGKPSLFLRLGGCNLSCKGFNCKTILNDEILTGCDSLYAVHPKFKTSWDYYNDPKPLIERLEDLAPNYKHFDFILTGGEPSLYFNNPILISVLEHFYRQKIPLFVESNGSIFFEFSPILKELHFTLSVKLSFSLEEESKRINLKALQNILNNAKSAHFKFVLESQNAAQSIIEIQNLLKQLSLKNNEIFLMPLGTTNKELDKNLKTLAPLAIKHGFRLSDRLHIRLWDNQKGF

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Crispr_ID: NZ_CP053394_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053394_4

1475963-1476235

Orphan

Consensus_repeat	Method
AAAAAGAAAGTTTAAAAAAAAGA	CRISPRCasFinder

5 spacers

The CRISPR arrays of NZ_CP053394_4

>merge|NZ_CP053394|4|1475963-1476235|CRISPRCasFinder
AAAACTAAAGATTAAAAAGCGAAAGTAGTGGGGATTGGCAAAAAGAAAAAGATCAAACCCCCCAAAAAAAAGAGTTTAAAAACGAAAGGCTTCAAAAAAGAAAGTTTAAAAAAAAGAGCTTTAAAAAAGAAATCCCTTTAAAAAGAAAGTTCAAAAAAGAAATCTCTTAAAAAGAAAGTTTAAAAAAAAGAAAGTTTAAAAAAAGAGAATTCAAAAACAAAGGCTTCAAAAAAATTAAACCCCTCCAAAAAAAAAGAAAAGCTTCAAAAGAAA

>NZ_CP053394|4|3|1475963-1476235|CRISPRCasFinder
AAAACTAAAGATTAAAAAGCGAA	AGTAGTGGGGATTGGCAAAAAGAAAAAGATCAAACCCCC
CAAAAAAAAGAGTTTAAAAACGA	AAGGCTTCAAAAAAGAAAGTTT
AAAAAAAAGAGCTTTAAAAAAGA	AATCCCTTTAAAAAGAAAGTTC
AAAAAAGAAATCTCTTAAAAAGA	AAGTTTAAAAAAAAGAAAGTTTAA
AAAAAGAGAATTCAAAAACAAAG	GCTTCAAAAAAATTAAACCCCTCCAAAA
AAAAAGAAAAGCTTCAAAAGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053394.1\|WP_025449274.1\|1476273_1478355_-\|Hop-family-adhesin-BabB	unknown	unknown	gnl\|CDD\|375731
NZ_CP053394.1\|WP_001917376.1\|1472577_1475121_-\|alanine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234701
NZ_CP053394.1\|WP_001917375.1\|1472003_1472576_-\|septum-formation-inhibitor-Maf	unknown	unknown	gnl\|CDD\|179732
NZ_CP053394.1\|WP_001917164.1\|1479781_1480210_-\|30S-ribosomal-protein-S6	unknown	unknown	gnl\|CDD\|179034
NZ_CP053394.1\|WP_000468322.1\|1475239_1475470_+\|YdcH-family-protein	unknown	unknown	gnl\|CDD\|225397
NZ_CP053394.1\|WP_001917372.1\|1467377_1468625_+\|glycosyltransferase-family-39-protein	unknown	unknown	gnl\|CDD\|379080
NZ_CP053394.1\|WP_001917369.1\|1465621_1466083_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053394.1\|WP_001917165.1\|1480362_1481385_-\|DNA-polymerase-III-subunit-delta	unknown	unknown	gnl\|CDD\|236276
NZ_CP053394.1\|WP_001917368.1\|1464453_1465596_+\|dihydropteroate-synthase	unknown	unknown	gnl\|CDD\|273657
NZ_CP053394.1\|WP_001917371.1\|1466477_1467374_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|307170
NZ_CP053394.1\|WP_001917373.1\|1469254_1470382_+\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|223579
NZ_CP053394.1\|WP_001917374.1\|1470547_1471552_+\|formamidase	unknown	unknown	gnl\|CDD\|183950
NZ_CP053394.1\|WP_001917163.1\|1479226_1479772_-\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|236275
NZ_CP053394.1\|WP_001917166.1\|1481374_1483309_-\|VacB/RNase-II-family-3'-5'-exoribonuclease	unknown	unknown	gnl\|CDD\|223631
NZ_CP053394.1\|WP_001917169.1\|1484107_1484698_-\|SH3-domain-containing-protein	unknown	unknown	gnl\|CDD\|214600
NZ_CP053394.1\|WP_000440196.1\|1478946_1479204_-\|30S-ribosomal-protein-S18	unknown	unknown	gnl\|CDD\|178997
NZ_CP053394.1\|WP_001917167.1\|1483308_1484100_-\|shikimate-dehydrogenase	unknown	unknown	gnl\|CDD\|161904
NZ_CP053394.1\|WP_001917171.1\|1485749_1487537_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173862
NZ_CP053394.1\|WP_001237418.1\|1468703_1469255_+\|DUF507-family-protein	unknown	unknown	gnl\|CDD\|225502
NZ_CP053394.1\|WP_001917170.1\|1484706_1485753_-\|microcin-C-ABC-transporter-permease-YejB	unknown	unknown	gnl\|CDD\|226642

Protein	Function_ID	Function_description	E-value
NZ_CP053394.1\|WP_025449274.1\|1476273_1478355_-\|Hop-family-adhesin-BabB	gnl\|CDD\|375731	pfam18304, SabA_adhesion, SabA N-terminal extracellular adhesion domain. This is the N-terminal extracellular adhesion domain of Sialic acid binding adhesin (SabA) present in Helicobacter pylori. The N-terminal domain of SabA functions as a sugar-binding adhesion domain with conserved disulfide bonds. Notably, these amino acid residues are not only conserved among SabA orthologs but also between SabA and BabA.	2.56997e-96
NZ_CP053394.1\|WP_001917376.1\|1472577_1475121_-\|alanine--tRNA-ligase	gnl\|CDD\|234701	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.	0
NZ_CP053394.1\|WP_001917375.1\|1472003_1472576_-\|septum-formation-inhibitor-Maf	gnl\|CDD\|179732	PRK04056, PRK04056, septum formation inhibitor Maf.	5.78142e-96
NZ_CP053394.1\|WP_001917164.1\|1479781_1480210_-\|30S-ribosomal-protein-S6	gnl\|CDD\|179034	PRK00453, rpsF, 30S ribosomal protein S6; Reviewed.	1.09252e-41
NZ_CP053394.1\|WP_000468322.1\|1475239_1475470_+\|YdcH-family-protein	gnl\|CDD\|225397	COG2841, COG2841, Uncharacterized protein conserved in bacteria [Function unknown].	4.94958e-24
NZ_CP053394.1\|WP_001917372.1\|1467377_1468625_+\|glycosyltransferase-family-39-protein	gnl\|CDD\|379080	pfam13231, PMT_2, Dolichyl-phosphate-mannose-protein mannosyltransferase. This family contains members that are not captured by pfam02366.	6.3821e-05
NZ_CP053394.1\|WP_001917163.1\|1479226_1479772_-\|single-stranded-DNA-binding-protein	gnl\|CDD\|236275	PRK08486, PRK08486, single-stranded DNA-binding protein; Provisional.	1.40678e-109
NZ_CP053394.1\|WP_001917165.1\|1480362_1481385_-\|DNA-polymerase-III-subunit-delta	gnl\|CDD\|236276	PRK08487, PRK08487, DNA polymerase III subunit delta; Validated.	5.64518e-128
NZ_CP053394.1\|WP_001917368.1\|1464453_1465596_+\|dihydropteroate-synthase	gnl\|CDD\|273657	TIGR01496, Dihydropteroate_synthase, dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by model TIGR00284. [Biosynthesis of cofactors, prosthetic groups, and carriers, Folic acid].	6.13069e-124
NZ_CP053394.1\|WP_001917371.1\|1466477_1467374_+\|DMT-family-transporter	gnl\|CDD\|307170	pfam00892, EamA, EamA-like transporter family. This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Members of this family usually carry 5+5 transmembrane domains, and this domain attempts to model five of these.	2.69373e-13
NZ_CP053394.1\|WP_001917373.1\|1469254_1470382_+\|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|223579	COG0505, CarA, Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism].	0
NZ_CP053394.1\|WP_001917374.1\|1470547_1471552_+\|formamidase	gnl\|CDD\|183950	PRK13287, amiF, formamidase; Provisional.	0
NZ_CP053394.1\|WP_001917166.1\|1481374_1483309_-\|VacB/RNase-II-family-3'-5'-exoribonuclease	gnl\|CDD\|223631	COG0557, VacB, Exoribonuclease R [Transcription].	9.75427e-134
NZ_CP053394.1\|WP_001917169.1\|1484107_1484698_-\|SH3-domain-containing-protein	gnl\|CDD\|214600	smart00287, SH3b, Bacterial SH3 domain homologues.	1.04731e-12
NZ_CP053394.1\|WP_000440196.1\|1478946_1479204_-\|30S-ribosomal-protein-S18	gnl\|CDD\|178997	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed.	2.41298e-32
NZ_CP053394.1\|WP_001917167.1\|1483308_1484100_-\|shikimate-dehydrogenase	gnl\|CDD\|161904	TIGR00507, Shikimate_dehydrogenase, shikimate dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. [Amino acid biosynthesis, Aromatic amino acid family].	3.86106e-109
NZ_CP053394.1\|WP_001917171.1\|1485749_1487537_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173862	cd08497, PBP2_NikA_DppA_OppA_like_14, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NZ_CP053394.1\|WP_001237418.1\|1468703_1469255_+\|DUF507-family-protein	gnl\|CDD\|225502	COG2952, COG2952, Uncharacterized protein conserved in bacteria [Function unknown].	5.26568e-81
NZ_CP053394.1\|WP_001917170.1\|1484706_1485753_-\|microcin-C-ABC-transporter-permease-YejB	gnl\|CDD\|226642	COG4174, COG4174, ABC-type uncharacterized transport system, permease component [General function prediction only].	0

>NZ_CP053394.1|WP_000468322.1|1475239_1475470_+|YdcH-family-protein
MFHEFRDEISVLKANNPHFDKIFEKHNQLDDDIKTAEQQNASDAEISHMKKQKLKLKDEIHGMIIEYREKQKSERA
>NZ_CP053394.1|WP_001917376.1|1472577_1475121_-|alanine--tRNA-ligase
MDIRNEFLQFFQNKGHAVYPSMPLVPNDATLLFTNAGMVQFKDIFTGMVPRPSIPRATSSQLCMRAGGKHNDLENVGYTARHHTLFEMLGNFSFGDYFKEEAILFAWEFVTKNLGFKPKDLYISVHEKDDEAVKLWEKFVPFDRIKKMGDKDNFWQMGDSGPCGPCSEIYIDQGEKHFKGSEDYFGGEGDRFLEIWNLVFMQYERSNDGVLSPLPKPSIDTGMGLERVQALLEHKLNNFDSSLFAPLMEEISELTSLDYASEFQPSFRVVADHARAVAFLLAQGVHFNKEGRGYVLRRILRRALRHGYLMGLKEAFLYKVVGVVCEQFSNTHAYLKESKEMVMKECFEEEERFLETLESGMELFNLSLTHLNENKIFDGKIAFKLYDTFGFPLDLTNDMLRSHGACVDMQGFESCMQEQVKRSKASWKGKQNNADFSAILNAYAPNEFVGYETTECLAKVLGFFDSDFKEITEANPNQEVWVLLERTPFYAEGGGAIGDRGTLFKDNEEAAIVSDTKNFFGLNFSLLEIKKPLKKDDQVIAQVSDERLEIAKHHSATHLLQSALREVLGSHVSQAGSLVESKRLRFDFSHPKALNDEELEKVEDLVNAQIFKHLTSQVEHMPLNQAKDKGALALFSEKYAENVRVVSFKEASIELCGGIHVENTGLIGGFRIVKESGVSSGVRRIEAVCGKAFYQLAKEENKELKNAKTLLKNNDVIAGINKLKESVKNSQKAPVSVDLPVEKIHGVNLVVGVVEQGDIKEMIDRLKSKHERLLAMVFKKENERITLACGVKNAPIKANVWANEVAQILGGKGGGRGDFASAGGKDIENLQAALNLAKNTALKALEG
>NZ_CP053394.1|WP_001917375.1|1472003_1472576_-|septum-formation-inhibitor-Maf
MGLILGSQSSARANLLKEHGIEFEQKALYFDEENLKTTDPREFVYLACKGKLEKAKELLANNCVIVVADSVVSVGNRMQRKAQNKREALEFLKRQNGNEIEVLTCSALISPKLEWLDLSVFRARLKAFDFSEIEKYLESGLWQESAGCVRLEGFHKPYIKSSSKNLSVGLGLNVEGLLGVLKLGAKLSLL
>NZ_CP053394.1|WP_001917374.1|1470547_1471552_+|formamidase
MGSIGSMGKPIEGFLVAAIQFPVPIVNSRKDIDHNIESIIRTLHATKAGYPGVELIIFPEYSTQGLNTAKWLSEEFLLDVPGKETELYAQACKEAKVYGVFSIMERNPDSNKNPYNTAIIIDPQGKIVLKYRKLFPWNPIEPWYPGDLGMPVCEGPGGSKLAVCICHDGMIPELAREAAYKGCNVYIRISGYSTQVNDQWILTNRSNAWHNLMYTVSVNLAGYDNVFYYFGEGQICNFDGTTLVQGHRNPWEIVTGEIYPKMADNARLSWGLENNIYNLGHRGYVAKPGGEHDAGLTYIKDLAAGKYKLPWEDHMKIKDGSIYGYPTTGGRFGK
>NZ_CP053394.1|WP_001917373.1|1469254_1470382_+|glutamine-hydrolyzing-carbamoyl-phosphate-synthase-small-subunit
MISLYLENGLFLQAQSFGASGTQAGELVFNTSMSGYQEVISDPSYKGQFVVFSMPEIGVVGTNFKDDESFFSCAGILARHYNEFFSNSRADFSLSAYLKERGVLGICGVDTRSLIKTLRHHGCLMMVASTIEHDKNKLEEILKNAPKISHSPLVSSVSTPKIITHQRATFDFKTLDYKPFDEKTSHKIIAVLDFGAKGNILNELQNVGLKALIYPHHTKANELIKAYEKKEISGIFLSNGPGDPLSLQQEIEEIKQLINAKIPMFGICLGHQLLSIAQGYPTYKLKFGHHGSNHPVKNLKTNAVEITAQNHNYCVPEEIEEIAIITHRNLFDNTIEGVRYKNAPIISVQHHPESSPGPKESRYIFKEFVELLKGF
>NZ_CP053394.1|WP_001237418.1|1468703_1469255_+|DUF507-family-protein
MRLKLTHINHISHKIANDFIHSKLLELKAPRELLCELIEGILEKSVKKENAIDEQARELLEENTDEIEFMRMDERQLFWMIKRQIAQKEGFHLFWEERCNDLSHQILNKILDEDLIMFSVSENLIRNLIYKSIDTYSKAYESIENEVHEKIKHYKRKLPVGSDEYELVFERLYEEELRRKGFL
>NZ_CP053394.1|WP_001917372.1|1467377_1468625_+|glycosyltransferase-family-39-protein
MQLSPLQSALLYFSYFIYPEKKTRSFDLSDLVFIIMVFLVLALGLLMSGEISISYNEAKDFFYSSAWFVQIAQKSAAILGQNDLALRLPFLIAHLINMFLFYLIGRKILKKPKDALYVVLTYALLPGVNLFAILLAKSVLVLSLELLVSYLYIKTQKIPYLTLSACAFLDGAFIPLLLGVFAYALRKRYFKSAIFALVVLIVNTALFSESFNKGLPSGYFIDTCLELMLLYSPLFFLYYPYTIYKALFDKKPSLLAFMSASGWLFPLLLSMRQEIDLKTFAPLALIGLPLFIKSVLNSLRVRLKEFRGQYYLRVFSLYLLMLTETLFLWGSKISGANEKLLNRHFLAKEVATALQLRGIHQIRTNDKQLALRLQFYGIKEGGRLRLINTKISKKRPDITIIYADKILQSYSLVRH
>NZ_CP053394.1|WP_001917371.1|1466477_1467374_+|DMT-family-transporter
MRNTILFGVSMILLANLCFGIMSAFVKITADYFSPMENVFYRSITMTLLLLLIYPFKPYRLKSYKQGGFKKLAFRVVVGGLAMLAFFYNIEKISLATATAFSQCAPIYTVLLSPLLLKEKLKRSALISACIGLVGVVLISDPSVENVGPVEIFMGILSGIFVSLAYITLRDLREYYDKQAVILAFAFGMSLLGLIGMFIDIPFLSTGIHIPRKEDILWISLIGISGTLGQYFLTYAYMNAPAGIIAPIEYTRIVWGLLFGLYLGDQFLDLKSSLGVALILCSGLLIALPALLKELKKI
>NZ_CP053394.1|WP_001917369.1|1465621_1466083_-|hypothetical-protein
MAVSSINQFDSNLYGLLNAKSAPKEDLAPIESTEKVEREKKDAPTENLPFNPDKRETYGFLVLELMSDREYEAFLRATAGMDESQKRLAAQSLYSLTDFYNGKFSKEVENAPKQPINGLHKKAFQTFNATNHNAFLQRYQNAYNNPSSMDVTL
>NZ_CP053394.1|WP_001917368.1|1464453_1465596_+|dihydropteroate-synthase
MTVKRLNPDALKNALLKTGSEKSAQTHMHKKGVSFVFEIQHLPLSATLILKQEAISVGGDFATPRDCILAKEPFYDGVLVVSASQLERLIVKCHSQPFGLKNLAQELKSHLKSQKPNTPQIMAILNLTPDSFYEKSRFDSKKALEEIYQLLEKGITLIDIGAASSRPESEIIDPKIEQDRLKEVLLEIKSQKLYQCAKFSIDTYHATTAQMALEHHFSILNDVSGFNSIKMLEVARDYKPTCILMHAQKTPKDMQENVFYHNLFDEMDRFFKEKLEVLEKYALQDIILDIGFGFAKLKEHNLALIKHLSHFLKFKKPLLVGASRKNTIGLITGREVQNRLAGTLSLHLMALQNGASILRVHDIDEHIDLIKVFKSLEETN
>NZ_CP053394.1|WP_025449274.1|1476273_1478355_-|Hop-family-adhesin-BabB
MLHAEDDGFYMSAGYQIGEAAQMVTNTKGIQQLSDNYEKLNNLLNNYSTLNTLIKLSADPSAINDARDNLGSSSRNLLDVKTNSPAYQAVLLALNAAVGLWQVTSYAFTACGPGSNESANGGIQTFNNVPGQNTTTITCNSYYEPGHGGPISTENYAIINKAYQIIQKALTANGSNGDGVPVLSNTTTKLDFTIQGDKRTGAKPNEKLIYPWSHGKAISTSWNGGEQTSTSESINTENNAQELLKQASIIITTLNEACPNFQNGGSGYWQGISGNGTMCGMFKNEISAIQGMIANAQEAVAQAKIVSENAQNQNNLDTGKPFNPYTDAGFAQSMLKNAQAQAEILNQAEQVVKNFEKIPKNFVSDSLGVCYEVQGGERRGTNPGQVTSNTWGAGCAYVQETITNLTNSIAHFGTQAEQIQQAENIADTLVNFKSRYSELGNTYNSITTALSKVPNAQSLQNVVSKKNNPYSPQGIETNYYLNQNSYNQIQTINQELGRNPFRKVGIVSSQTNNGAMNGIGIQVGYKQFFGQKRKWGARYYGFFDYNHAFIKSSFFNSASDVWTYGFGADALYNFINDKATNFLGKNNKLSVGLFGGIALAGTSWLNSEYVNLATMNNVYNAKMNVANFQFLFNMGVRMNLARSKKKGSDHAAQHGIELGLKIPTINTNYYSFMGAELKYRRLYSVYLNYVFAY
>NZ_CP053394.1|WP_000440196.1|1478946_1479204_-|30S-ribosomal-protein-S18
MERKRYSKRYCKYTEAKISFIDYKDLDMLKHTLSERYKIMPRRLTGNSKKWQERVEVAIKRARHMALIPYIVDRKKVVDSPFKQH
>NZ_CP053394.1|WP_001917163.1|1479226_1479772_-|single-stranded-DNA-binding-protein
MFNKVIMVGRLTRNVELKYLPSGSAAATIGLATSRRFKKQDGTLGEEVCFIDARLFGRTAEIANQYLSKGSSVLIEGRLTYESWMDQTGKKNSRHTITADSLQFMDKKSDNPQANAMQDSIMHEGFNNAYPANHNAPSQDPFSQAPSYAQNAYAKENLQAQPSKYQNSVPEINIDEEEIPF
>NZ_CP053394.1|WP_001917164.1|1479781_1480210_-|30S-ribosomal-protein-S6
MRHYETMFILKPTLVEEEIKSKIEFYKEVITKHHGVIETSLDMGMRNLAYEIKKHKRGYYYVAYFKAEPSMILELERLYRINEDVLRFIVIKYESKKEVEAWHALVDRANKKPSHAKEKHEKTEHTHSNHTEEAESVGSHSE
>NZ_CP053394.1|WP_001917165.1|1480362_1481385_-|DNA-polymerase-III-subunit-delta
MYRKDLDNYLKQHLPKAVFLYGEFDFFIHYYIQTISSLFKCDNPDMETSLFYASDYEKGQIATLLEQDSLFGGSSLVVLKLDFALHKKFKENDINLFLKALERPSHNRLIIGLYNSKSDTTKYKYTSEIIVKFFQKSPLKDEAIHARFFTPKTWESLKFLQERANFLHLDISSHLLNALFETNNEDLSISFNDLDKLAILNTPITLEDIQELSSNAGDMDLQKLILGLFLKKSVLDIYDYLLKEGKKDADILRGLERYFYQLFLFFAHIKTTGLMDAKEVLGYAPPKEIAENYAKNALRLKEAGYKRVFEIFRLWHIQSMQGQKELGFLYLTPIQKIINP
>NZ_CP053394.1|WP_001917166.1|1481374_1483309_-|VacB/RNase-II-family-3'-5'-exoribonuclease
MQGFLRSLFFGVKKIPKRFAPLIEKGVLKEALQLKKECYFLKEGFDIGRIERAENKAFFISLAKNYPKDPLIKNLPPSFKTDALILCQIECSKKRPLAFFKAALLNADHTMIAYLAKEKNQIVAIPFKESFKKPISLKHSQRSLLELPRHCVVKIDLKKREISEILGVLEDPLIDENLSLSLFDRVKDFSKDCLSLAQHYAQLKASDFKDRINYSHIPFITIDPKDAKDFDDAIFYDQEKRVLFVAVADVSEFVPKHSSLDKEARVRGFSVYFPNSVYPMLPLSLSQGACSLKAFEKRLALVYEIPLDNLKNARLSQGVIEVRANCTYEEINHFLSTNQSSLDKDLQQSLLGFLEVALKLKKERLKKGFNFNSFENKLYLNEEGRIEKIEAEKESGAYTLIEEAMLLANQSSARLLDEHFHNKGIYRTHKEPSLEQQKRLYAKLFDYEIMRPKNMGFFPFLEHALKIAKEKSIEREVSRLIIKSQNLALYSPMQESHFGLGFASYTHFTSPIRRYSDLALHRLLKELLFHQAKGCSYLLEETPELCSELNALQKKAALIERDFIKRKFARLALEFLEKEFLGVVLEVKDWVVVGLKEFIGLKVLIKTNKVFKPLEKVRVTITHADLILGQVRGEITERIKEHVS
>NZ_CP053394.1|WP_001917167.1|1483308_1484100_-|shikimate-dehydrogenase
MKLKSFGVFGNPIKHSKSPLIHNACFLTFQKKLGFLGHYHPILLPLESHIKNEFLHLGLSGANVTLPFKERAFQVCDKIKGIALECSSVNTLVLENDELVGYNTDALGFWLSLGGESYQSALILGSGGSAKALACGLKKQGLQVSVLNRSSRGLDFFQRLGCDCFMDPPKSAFDLIINATSASLNNELPLNKEVLKGYFKEGKLAYDLAYGFLTPFLSLAKELEIPFQDGKDMLIYQAALSFEKFSASQIPYSKAFEVMRSVF
>NZ_CP053394.1|WP_001917169.1|1484107_1484698_-|SH3-domain-containing-protein
MKTEMKSSLKLFMRPLLVVLAFMLLYALAHAALGFYVKKDSAPIGQNVEKTETERQNSALSPKQEEANTATTATEENPTKDTVPPLDTAAQKQETKQEVKQEQEKENEPKQDSVSPVQNNQKTPTTSTMGKKPLEYKVAVSGVNVRTFPSTKGKIIGSLAKNKSVKVLEIQNDWAEIEFSNKTKGYVFLKLLKKAE
>NZ_CP053394.1|WP_001917170.1|1484706_1485753_-|microcin-C-ABC-transporter-permease-YejB
MIAYILKRLLLIIPTLLAIMTINFFLIQSAPGGPIEQMMAKINNTQSKEIQGVVKDRAYRGSQGLESDLLENLKKLYGFDRPIGERYLLMLKKYVQFDFGESFYRQIKVVDLIKEKLPVSISLGLFSTLLIYLISIPLGIFKAKRNNEPLDVLSSVVIIVANAIPAFLFAVVLIVFFAGGNYWHWFPLKGLVSDNFESLSALGKIKDYLWHITLPVLCISLGGFASLTLLVKNSFLDEMGKLYVVSAKAKGCSVGRIFYAHVFRNAILLVVAGFPQAFLGMFFSSSLLIEIVFSLDGLGLLGYESIVSRDYPVVFGSLYIFTLLGLIASLISDLLCVVIDPRIDFEKR
>NZ_CP053394.1|WP_001917171.1|1485749_1487537_-|ABC-transporter-substrate-binding-protein
MVFKILGLWLGVFCFLEATPYLYLGEEPKYKDNFTHFEYANPNARKGGVLRNDAIGTFDSLNPFALKGTKAEGLDLIYDTLMVQSLDEPFAEYPLIAKDAEVAKDNSYVIFTIDKRARFSNNAPILASDVKFSFDTIMKLGSPIYRQYYQDVKKAVILDKHHVKFIFKTTENKELPLILGQLQIFSKKAFQKDYFTKNPLLIPVSSGPYVIASFDVGKKITYQRNPNYWARNLPSRKGQFNFDEIKFEYYKDETIALQAFLGGAYDWRIETTAKVWARGYVGKAMDNKKITKYLIAHKMPSGMQGFFFNTRREIFKDKRVREALFYAFDFEWANKNLFFSQYKRTTSFFSNSVYASPILPSPEEKILLAPYEKSLDERVFKEPYVVPRTDGPDVLGYNLRENLKYAQKLLESAGFSYKNMRLVDKNNKPFSFTLLLNSPAFERLALAFAKNLRVLGIEMKIQRVDLSQYVNRVKSYDFDMIVGVIGQSSFPGNEQRFYFGSLSAKEKGTRNYAGISSKAVDDLIEKIINAKDYKEQLAATQAMDRVLLWGFYVIPHFYLPNYRIAAYNYIGMPEISPSYGFSPYLWWVKKERGPK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP053394_4	4.2\|1476048\|22\|NZ_CP053394\|CRISPRCasFinder	1476048-1476069	22	KF148616	Campylobacter phage CP8, complete genome	75524-75545	2	0.909
NZ_CP053394_4	4.2\|1476048\|22\|NZ_CP053394\|CRISPRCasFinder	1476048-1476069	22	NC_016562	Campylobacter phage CPX, complete genome	75291-75312	2	0.909
NZ_CP053394_4	4.2\|1476048\|22\|NZ_CP053394\|CRISPRCasFinder	1476048-1476069	22	JX569801	Campylobacter phage CP30A, complete genome	122586-122607	2	0.909
NZ_CP053394_4	4.2\|1476048\|22\|NZ_CP053394\|CRISPRCasFinder	1476048-1476069	22	NC_042112	Campylobacter phage CP81, complete genome	52789-52810	2	0.909
NZ_CP053394_4	4.3\|1476093\|22\|NZ_CP053394\|CRISPRCasFinder	1476093-1476114	22	NZ_CP028284	Enterococcus faecalis strain FDAARGOS_324 plasmid unnamed2, complete sequence	58713-58734	2	0.909
NZ_CP053394_4	4.3\|1476093\|22\|NZ_CP053394\|CRISPRCasFinder	1476093-1476114	22	NZ_CP040897	Enterococcus faecalis strain HA-1 plasmid punnamed	58540-58561	2	0.909
NZ_CP053394_4	4.3\|1476093\|22\|NZ_CP053394\|CRISPRCasFinder	1476093-1476114	22	NZ_CP046109	Enterococcus faecalis strain 133170041-3 plasmid pAD1, complete sequence	25334-25355	2	0.909
NZ_CP053394_4	4.3\|1476093\|22\|NZ_CP053394\|CRISPRCasFinder	1476093-1476114	22	NZ_CP028837	Enterococcus faecalis strain FC plasmid unnamed2, complete sequence	30169-30190	2	0.909
NZ_CP053394_4	4.3\|1476093\|22\|NZ_CP053394\|CRISPRCasFinder	1476093-1476114	22	NC_011642	Enterococcus faecalis plasmid pMG2200, complete sequence	1809-1830	2	0.909
NZ_CP053394_4	4.3\|1476093\|22\|NZ_CP053394\|CRISPRCasFinder	1476093-1476114	22	NZ_CP042215	Enterococcus faecalis strain L15 plasmid pL15-A, complete sequence	55517-55538	2	0.909
NZ_CP053394_4	4.4\|1476138\|24\|NZ_CP053394\|CRISPRCasFinder	1476138-1476161	24	NZ_CP028161	Lactococcus lactis subsp. lactis strain 14B4 plasmid p14B4, complete sequence	47228-47251	3	0.875
NZ_CP053394_4	4.4\|1476138\|24\|NZ_CP053394\|CRISPRCasFinder	1476138-1476161	24	NZ_CP040096	Pantoea sp. SO10 plasmid unnamed1, complete sequence	409858-409881	3	0.875
NZ_CP053394_4	4.4\|1476138\|24\|NZ_CP053394\|CRISPRCasFinder	1476138-1476161	24	KT895374	Bacillus phage vB_BpuM-BpSp, complete genome	210928-210951	3	0.875
NZ_CP053394_4	4.4\|1476138\|24\|NZ_CP053394\|CRISPRCasFinder	1476138-1476161	24	NZ_CP024382	Borrelia miyamotoi strain Izh-14 plasmid pIzh14-7	10926-10949	4	0.833
NZ_CP053394_4	4.5\|1476185\|28\|NZ_CP053394\|CRISPRCasFinder	1476185-1476212	28	MH572304	Microviridae sp. isolate SD_SC_17, complete genome	3307-3334	7	0.75

1. spacer 4.2|1476048|22|NZ_CP053394|CRISPRCasFinder matches to KF148616 (Campylobacter phage CP8, complete genome) position: , mismatch: 2, identity: 0.909

aaggcttcaaaaaagaaagttt	CRISPR spacer
aaggcttcaaaagagaaagtta	Protospacer
************.********

2. spacer 4.2|1476048|22|NZ_CP053394|CRISPRCasFinder matches to NC_016562 (Campylobacter phage CPX, complete genome) position: , mismatch: 2, identity: 0.909

aaggcttcaaaaaagaaagttt	CRISPR spacer
aaggcttcaaaagagaaagtta	Protospacer
************.********

3. spacer 4.2|1476048|22|NZ_CP053394|CRISPRCasFinder matches to JX569801 (Campylobacter phage CP30A, complete genome) position: , mismatch: 2, identity: 0.909

aaggcttcaaaaaagaaagttt	CRISPR spacer
aaggcttcaaaagagaaagtta	Protospacer
************.********

4. spacer 4.2|1476048|22|NZ_CP053394|CRISPRCasFinder matches to NC_042112 (Campylobacter phage CP81, complete genome) position: , mismatch: 2, identity: 0.909

aaggcttcaaaaaagaaagttt	CRISPR spacer
aaggcttcaaaagagaaagtta	Protospacer
************.********

5. spacer 4.3|1476093|22|NZ_CP053394|CRISPRCasFinder matches to NZ_CP028284 (Enterococcus faecalis strain FDAARGOS_324 plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.909

aatccctttaaaaagaaagttc	CRISPR spacer
aatccatttaaaaagaaagtta	Protospacer
***** ***************

6. spacer 4.3|1476093|22|NZ_CP053394|CRISPRCasFinder matches to NZ_CP040897 (Enterococcus faecalis strain HA-1 plasmid punnamed) position: , mismatch: 2, identity: 0.909

aatccctttaaaaagaaagttc	CRISPR spacer
aatccatttaaaaagaaagtta	Protospacer
***** ***************

7. spacer 4.3|1476093|22|NZ_CP053394|CRISPRCasFinder matches to NZ_CP046109 (Enterococcus faecalis strain 133170041-3 plasmid pAD1, complete sequence) position: , mismatch: 2, identity: 0.909

aatccctttaaaaagaaagttc	CRISPR spacer
aatccatttaaaaagaaagtta	Protospacer
***** ***************

8. spacer 4.3|1476093|22|NZ_CP053394|CRISPRCasFinder matches to NZ_CP028837 (Enterococcus faecalis strain FC plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.909

aatccctttaaaaagaaagttc	CRISPR spacer
aatccatttaaaaagaaagtta	Protospacer
***** ***************

9. spacer 4.3|1476093|22|NZ_CP053394|CRISPRCasFinder matches to NC_011642 (Enterococcus faecalis plasmid pMG2200, complete sequence) position: , mismatch: 2, identity: 0.909

aatccctttaaaaagaaagttc	CRISPR spacer
aatccatttaaaaagaaagtta	Protospacer
***** ***************

10. spacer 4.3|1476093|22|NZ_CP053394|CRISPRCasFinder matches to NZ_CP042215 (Enterococcus faecalis strain L15 plasmid pL15-A, complete sequence) position: , mismatch: 2, identity: 0.909

aatccctttaaaaagaaagttc	CRISPR spacer
aatccatttaaaaagaaagtta	Protospacer
***** ***************

11. spacer 4.4|1476138|24|NZ_CP053394|CRISPRCasFinder matches to NZ_CP028161 (Lactococcus lactis subsp. lactis strain 14B4 plasmid p14B4, complete sequence) position: , mismatch: 3, identity: 0.875

aagtttaaaaaaaagaaagtttaa	CRISPR spacer
aagtttatgaaaaagaaagtttat	Protospacer
******* .**************

12. spacer 4.4|1476138|24|NZ_CP053394|CRISPRCasFinder matches to NZ_CP040096 (Pantoea sp. SO10 plasmid unnamed1, complete sequence) position: , mismatch: 3, identity: 0.875

aagtttaaaaaaaagaaagtttaa	CRISPR spacer
cagtttaaaaaaaagcaagttgaa	Protospacer
 ************** ***** **

13. spacer 4.4|1476138|24|NZ_CP053394|CRISPRCasFinder matches to KT895374 (Bacillus phage vB_BpuM-BpSp, complete genome) position: , mismatch: 3, identity: 0.875

aagtttaaaaaaaagaaagtttaa	CRISPR spacer
tagtataaaaaaaataaagtttaa	Protospacer
 *** ********* *********

14. spacer 4.4|1476138|24|NZ_CP053394|CRISPRCasFinder matches to NZ_CP024382 (Borrelia miyamotoi strain Izh-14 plasmid pIzh14-7) position: , mismatch: 4, identity: 0.833

aagtttaaaaaaaagaaagtttaa	CRISPR spacer
ccgtttaaaaaaaagaaagattag	Protospacer
  ***************** ***.

15. spacer 4.5|1476185|28|NZ_CP053394|CRISPRCasFinder matches to MH572304 (Microviridae sp. isolate SD_SC_17, complete genome) position: , mismatch: 7, identity: 0.75

gcttcaaaaaaattaaacccctccaaaa	CRISPR spacer
tattcaaaagaattaaacccctctggca	Protospacer
  *******.*************... *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

468702 : 477657

Enterobacteria_phage(33.33%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001917567.1\|468702_469965_+	exodeoxyribonuclease VII large subunit	A0A1V0SD82	Indivirus	2.5e-38	37.4
WP_025449280.1\|469983_471138_-	site-specific DNA-methyltransferase	Q1MVP0	Enterobacteria_phage	1.2e-23	27.0
WP_001917565.1\|471148_471391_-	hypothetical protein	NA	NA	NA	NA
WP_100228325.1\|471706_472231_+	restriction endonuclease	NA	NA	NA	NA
WP_171407237.1\|472227_472497_+	DNA methyltransferase	A0A0N9PB81	Sulfolobus_monocaudavirus	1.1e-07	48.1
WP_001917699.1\|472519_473779_-\|transposase	transposase	A0A1S5RFS3	Helicobacter_phage	7.0e-235	97.6
WP_025449289.1\|473753_474407_-\|transposase	IS607 family transposase	A0A1S5RGS9	Helicobacter_phage	1.1e-114	98.2
WP_001917560.1\|475086_477657_+	AAA family ATPase	H6X3M6	Enterobacteria_phage	1.6e-113	34.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP053394

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection