CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP053436	Spirosoma sp. TS118 plasmid pTS, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP053435	Spirosoma sp. TS118 chromosome, complete genome	2 crisprs	csa3,cas3,DEDDh,WYL,Cas9_archaeal	2	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP053435_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053435_1

726242-726335

Orphan

Consensus_repeat	Method
GCTGTTGCGGTCGTCGCGGTTGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP053435_1

>merge|NZ_CP053435|1|726242-726335|CRISPRCasFinder
GCTGTTGCGGTCGTCCCGATTAAAGCGAGGCCGGTCGCTATCCGGCCGATCCGAAAACCGCCGTTCGCTGCCGAACCGGTCATCGCGGTTGACC

>NZ_CP053435|1|1|726242-726335|CRISPRCasFinder
GCTGTTGCGGTCGTCCCGATTAAA	GCGAGGCCGGTCGCTATCCGGCCGATCCGAAAACCGCCGTTCGCT
GCCGAACCGGTCATCGCGGTTGACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053435.1\|WP_171738267.1\|719279_720614_+\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NZ_CP053435.1\|WP_171742048.1\|721537_721777_+\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|179197
NZ_CP053435.1\|WP_171738033.1\|720666_721418_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129
NZ_CP053435.1\|WP_171738269.1\|722591_723677_-\|glycine-cleavage-system-aminomethyltransferase-GcvT	unknown	unknown	gnl\|CDD\|234742
NZ_CP053435.1\|WP_171738277.1\|735658_736369_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053435.1\|WP_171738270.1\|724279_724921_-\|deoxyribose-phosphate-aldolase	unknown	unknown	gnl\|CDD\|188646
NZ_CP053435.1\|WP_171738265.1\|716398_717517_+\|HlyD-family-secretion-protein	unknown	unknown	gnl\|CDD\|224482
NZ_CP053435.1\|WP_171738280.1\|737168_737438_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053435.1\|WP_171738281.1\|737535_738330_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP053435.1\|WP_171738273.1\|729443_731174_+\|S41-family-peptidase	unknown	unknown	gnl\|CDD\|223864
NZ_CP053435.1\|WP_171738278.1\|736441_736840_-\|DoxX-family-protein	unknown	unknown	unknown
NZ_CP053435.1\|WP_171738276.1\|733961_735440_-\|Fe-S-cluster-assembly-protein-SufB	unknown	unknown	gnl\|CDD\|236990
NZ_CP053435.1\|WP_171738263.1\|714316_715672_-\|NAD-dependent-succinate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143418
NZ_CP053435.1\|WP_171738279.1\|736880_737147_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053435.1\|WP_171738274.1\|731225_731681_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053435.1\|WP_171738268.1\|721838_722549_-\|2-phosphosulfolactate-phosphatase	unknown	unknown	gnl\|CDD\|377205
NZ_CP053435.1\|WP_171738264.1\|715737_716223_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP053435.1\|WP_171738266.1\|717606_719211_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|129794
NZ_CP053435.1\|WP_171738272.1\|727241_729215_+\|acetoacetate--CoA-ligase	unknown	unknown	gnl\|CDD\|235134
NZ_CP053435.1\|WP_171738275.1\|731785_733666_-\|gliding-motility-associated-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|372639

Protein	Function_ID	Function_description	E-value
NZ_CP053435.1\|WP_171738267.1\|719279_720614_+\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	3.75812e-36
NZ_CP053435.1\|WP_171742048.1\|721537_721777_+\|acyl-carrier-protein	gnl\|CDD\|179197	PRK00982, acpP, acyl carrier protein; Provisional.	7.86543e-19
NZ_CP053435.1\|WP_171738033.1\|720666_721418_-\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	1.31271e-32
NZ_CP053435.1\|WP_171738269.1\|722591_723677_-\|glycine-cleavage-system-aminomethyltransferase-GcvT	gnl\|CDD\|234742	PRK00389, gcvT, glycine cleavage system aminomethyltransferase GcvT.	0
NZ_CP053435.1\|WP_171738270.1\|724279_724921_-\|deoxyribose-phosphate-aldolase	gnl\|CDD\|188646	cd00959, DeoC, 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.	2.74373e-35
NZ_CP053435.1\|WP_171738265.1\|716398_717517_+\|HlyD-family-secretion-protein	gnl\|CDD\|224482	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms].	7.75522e-74
NZ_CP053435.1\|WP_171738281.1\|737535_738330_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	4.6975e-22
NZ_CP053435.1\|WP_171738273.1\|729443_731174_+\|S41-family-peptidase	gnl\|CDD\|223864	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane].	1.75477e-96
NZ_CP053435.1\|WP_171738276.1\|733961_735440_-\|Fe-S-cluster-assembly-protein-SufB	gnl\|CDD\|236990	PRK11814, PRK11814, cysteine desulfurase activator complex subunit SufB; Provisional.	0
NZ_CP053435.1\|WP_171738263.1\|714316_715672_-\|NAD-dependent-succinate-semialdehyde-dehydrogenase	gnl\|CDD\|143418	cd07100, ALDH_SSADH1_GabD1, Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 1-like. Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde (SSA) to succinate. SSADH activity in Mycobacterium tuberculosis (Mtb) is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb GabD1 SSADH1 reportedly is an enzyme of the gamma-aminobutyrate shunt, which forms a functional link between two TCA half-cycles by converting alpha-ketoglutarate to succinate.	0
NZ_CP053435.1\|WP_171738268.1\|721838_722549_-\|2-phosphosulfolactate-phosphatase	gnl\|CDD\|377205	pfam04029, 2-ph_phosp, 2-phosphosulpholactate phosphatase. Thought to catalyze 2-phosphosulpholactate = sulpholactate + phosphate. Probable magnesium cofactor. Involved in the second step of coenzyme M biosynthesis. Inhibited by vanadate in Methanococcus jannaschii. Also known as the ComB family.	4.72905e-98
NZ_CP053435.1\|WP_171738264.1\|715737_716223_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	7.04991e-11
NZ_CP053435.1\|WP_171738266.1\|717606_719211_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.25136e-120
NZ_CP053435.1\|WP_171738272.1\|727241_729215_+\|acetoacetate--CoA-ligase	gnl\|CDD\|235134	PRK03584, PRK03584, acetoacetate--CoA ligase.	0
NZ_CP053435.1\|WP_171738275.1\|731785_733666_-\|gliding-motility-associated-C-terminal-domain-containing-protein	gnl\|CDD\|372639	pfam13585, CHU_C, C-terminal domain of CHU protein family. The function of this C-terminal domain is not known; there are several conserved tryptophan and asparagine residues.	3.28259e-28

>NZ_CP053435.1|WP_171738270.1|724279_724921_-|deoxyribose-phosphate-aldolase
MNHLFPYIERTLLHPGVTISEQYEVLDEVTQLSLAGMTVAPFWVRKFRRELGDKHPAVLATVIGYPYGYQRTEAKQLELELALKDGASEIEVVVNTSALFSSSSGWLKIELAKLVALAHAQEKLLTVILESTLLDSDQINRLIKLAADAGADFLKNATGTLQAAFTLETALQFRRDVPRSVGVKIVADGATEEQLEALVAAEVDRLSLSHRPD
>NZ_CP053435.1|WP_171738269.1|722591_723677_-|glycine-cleavage-system-aminomethyltransferase-GcvT
MSLKQVPLHHIHQQSGAKIVPFAGFEMPVRYSSDLDEHNTVRNAVGIFDVSHMGEFILKGEGALDLIQRVSANDASTLFDGKVQYSYLPNGRGGIVDDLLVYRISEVEYMLVVNASNIEKDWNWISEHNTQGVDMVNISDGMCLFAVQGPLAAKALESLTPADLEMTYYTFEKTDFAGYANVIVSATGYTGAGGFEIYVSNHQAEGVWNAIMEAGKPYGIKPIGLGARDTLRLEMGYNLYGNDITDETSPLEAGLGWVTKFTHDFIDADRLKQQKEQGVERKLVGFEMIDRGIPRGHYELTDADGTKIGEVTSGTQSPTLGKGIGLGYVPVAFSKLGSELFVKVRDKLLKAQVVKLPFVKK
>NZ_CP053435.1|WP_171738268.1|721838_722549_-|2-phosphosulfolactate-phosphatase
MKQIDVCLTPDLLHLHTTENTIVVVADVFRATSCMVTAFAHGVASIIPVATIDECRVWQERGYLAAAERNARRVDGFELDNSPFTYMDDRIRGANIAMTTTNGTLAITRSRNAVKVLVGSFLNLDAIARYLKTEPYDVLVLCAGWKGRVNLEDTLFAGALVDRLKDGFAMAEDSAIMANRLYCDGKNNLVSYMANASHIRRLQRLGIQKDITYCLQHDLYDVVPVLRGTALVSMAV
>NZ_CP053435.1|WP_171742048.1|721537_721777_+|acyl-carrier-protein
MKERVIEILKNFGISETAITDDVNFVRDLGMDSLDTVDLIMQLEQEFGVRIPDEDYSKLTTLQGVLQYLRYEQQVTVNA
>NZ_CP053435.1|WP_171738033.1|720666_721418_-|IS5-family-transposase
MRRYEITDQQWQQIAHLLPGKVGHVGRSAVDNRLFINAVIWIARSGAPWRDLPERFGPWNSVYQRFRRWAKAGVWKTVFDELQEPDLDWLMIDSTTVRAHQHAAGPKKSDPASECLGQSVGGWTTKIHAVVDALGNPMRLILSVGQRADITQAKGLLTGYETDAVLADRGYDANELIDWLTESHTQVVIPSKKNRLADRQIDENLYKERNQVERYFNKLKQYRRVATRYEKTAVSFAGFIYLSSALILLA
>NZ_CP053435.1|WP_171738267.1|719279_720614_+|TolC-family-protein
MKPTVLIIASLFAAGTVQAQNQAIQVPDDLRALVQQANANYSVLKQQQQQIQAGDLRVDIARSAMKPNVNGNASYQYLTPVAKATLPVDGVNRTIQFQPNHNVNAYVGVGQTIYDWGRTNAAVQQATGNAQILRRSLEITQQNLAYQVAAAYYSIGFLQQSLAVQDSVIKTAGANVRLLATRLQNGDALEYDVLTQQVRVKTAQNRRVEIQNQLERQIALLTYLTGNLNPTVAGAASQFNLEMAGRNITTQPYNLDGDLQSVVAGNKEVQLAQDRVRQAETDVLINQLTGRPSLSFSGSAGYRNGYLPEINTPKFNVAAGVALSVPIYAGKRYQLQNQAAQLNLNASRYAVENTNAQLRQNIAQLNADIRSNQTRLANLETQVQQARKALQIANARLRNGVITNVELQSAETGVEEAELGRLNFQYQLLLNQLELKRLLGETLF
>NZ_CP053435.1|WP_171738266.1|717606_719211_+|DHA2-family-efflux-MFS-transporter-permease-subunit
MATQTMSPPAPPMGLRRWAVVVTAISAAIIELIDTSIVNVGLTDIAGNLGVTIEDVAWVVTSYAIANVIVIPMTGFLQRYFGRKNYYIGSIILFTVASYGCGLSDSLWMLILFRFLQGVGGGALLSTSQGLMFDAFPPAQRPVASALFGMGIVLGPTLGPTLGGYIIDNYHWSWMFYINVPIGILAVFMSSTFIDKKEDEININRRAIHIDQIGILLLAVGIGSLQYVLERGEADDWFDSKTILWLSVAAIIAIPLFVWWELRGTREPVVDLRTLKNRNLTIGSILIVVVGYGLFTSVLLFPLFAQRIVGLTATKTGQLLIPGGLVTLPMFAIVGRMLAKGVSPRLIVALGYVAFGSFCFMMSTYNADASSGDFIQALIIRGIGLALVNVPLINQSVSTLEPRQLPTGIAIVNMMRQIGGAFGVAITNTYVTQRTAVHRSDLVSNLQPGDMITTERITALTQGLVARGMNAFDAVSGAYKTLDAIISRQALMLAYLDTFQLAGMFFVVTSPLLLLLKRKKVDAATAKAIADAAH
>NZ_CP053435.1|WP_171738265.1|716398_717517_+|HlyD-family-secretion-protein
MATVMTKEEITDTEEKSGLRTYLPRIIIGLVLLVGGYFGYQAFRHSQQYETTDNAQIEGNSAPVLARVAGYVQSVSVDDYANVKKGQLLVTIDPQEYDVALAQAEADYQQSLADLENARADLQNAQASARNVAQNLRVAQSNADVQASRRDKAQNDLKRDQNLYREQSLTQKQLEDSRSAADVQTRQYTANVEQISLARTSQGIAQAGIAKAQANIQKIQAVLKVKQAAIDNAKLRVGYARLTAPIDGKIGRKNVVVGQYVQPGQNLFTIVADSTFWVVANFKETQLEKMHLGQLVDIKLDAYPDLDIKGRIASLSEATGARFALLPPDNASGNFVKITQRVPVKIEIQNPEKYRNQLRAGLSVEAEVRVAD
>NZ_CP053435.1|WP_171738264.1|715737_716223_-|MarR-family-transcriptional-regulator
MIVETDKKNFDFNQFRAIRGRSIGRLLWRLKRYMDNFVEPRLHALGYTNFKMSYLMVLAHIDEGGITNNELAKRACVTKQMMSKLVSLLETDGYIHIEKNPTDSRSSVIFLNERGKELFIALRDCMQEGRDRFDAIVGHDRMELVIDTMVELVTELEKDEQ
>NZ_CP053435.1|WP_171738263.1|714316_715672_-|NAD-dependent-succinate-semialdehyde-dehydrogenase
MFSSINPYNQKKLKTYRADSPAVIERKLKQADRAFADWSALSLQERLDALRRVGEHLTANNQQLGALITSEMGKTLKEAVAEIDKCALSCHFYADHAAEFLADQTIQTEARSSFITYQPLGPVLAIMPWNFPFWQVFRFAIPGLIAGNVGLLKHAPNVFGCALAIDEVFRTCGLPEGVFQSLLIDVAPVDGLLKDRRVKAVTLTGSSRAGASVATIAGSQIKKSVLELGGSDALLVLADADLEKAAETAVRSRMQNAGQSCIAAKRFIVEKAVKKPFTELVLHYIEQIRQGDPTDDDTTMGPMARLDLADSIERQCRQSVAKGAKLLTGGNRDGCNVQPMLLHKVKPGMPAYDEETFGPLAVLIEAKNESDAVRLANLSDFGLGSAIWTEDIAKADRLARQLQVGSVFVNGLMRSDARVPFGGIKQSGFGRELSEIGLKEFVNVKTVWIEG
>NZ_CP053435.1|WP_171738272.1|727241_729215_+|acetoacetate--CoA-ligase
MPRPTLTPLYKPDQRTVDQSILKQYMNWLFIKKGLYFRDYDDLWDWSVTDLEDFWESIYQFFDVQSHTPYHEVVLKPNRSEMIGTEWFTGATLNYAEYLFRHKNDQRAALLFASERQRLVAISWDTLERQVAAVATYLRQQGVGVGDRVVSVLPNIPQAVVAFLATNAIGAVWSSCSPDFGTASIVDRFQQIEPKVLIAADGYTYNGKPIDKTEAMRELRVSLPTLQRVIWVPYLDASSKLERATLWKDVLDTPAPDGLEFEPVPFEHPIWVLYSSGTTGKPKAITHSVGGCLLEHLKVLALHQDVHVGERYFWYSTTGWMMWNFAVGSLLVGATLVLYDGAAGYPDLNVLWKLAEDARIAHFGGGAAFYLACLREGLQPGGSYKLTHLRSIGSTGSPLPPEGFRWIYDAVKPNVWLISFSGGTDVCSGFVGGNPMLPVYEGEIQCRLLGSKVEAFDENAKPVRGELGEMVILEPMPSMPIYFWNDPNNERYRKSYFTEYPGIWRHGDYIQITERNGVIISGRSDATLNRDGVRIGTSEIYSAVESLPEIADSLIVGLEQPGGRYFMPLFVVLREGFTLSDELITRIKQTLRSRFSPRHVPDAVYPIGEVPYTISGKKLETPVKKILSGMDASLATSKDTLRNPASLDQFTGFIISR
>NZ_CP053435.1|WP_171738273.1|729443_731174_+|S41-family-peptidase
MEVGQDFNHEPGGQKGTRGRIHNDKATVRLPMLLGITLAGGMLIGATFFGGAKSLNTIGRGYTKYREILQLIENNYVDTVNTDELVDYSIEKMLEKLDPHTAYMNPQDAVAARAQLEGGFDGIGVEFNIYKDTVYVVTPISGGPSETAGIMSGDKIIKVDNTPLAGSNIENSTVFKALRGKRGTDVKLTILRKGEKEPKVFTITRDRIPTYSVDAAYMVDAKTGYLKINRFSETTYDEFKTALASLKAQGMTQLLMDLRNNPGGYMDRATSIADEFIAGNKLLVYTDGKDNRYDRQTFARIAGQFEEGPLVVLVDEGSASASEIVAGALQDHDRALIVGRRSFGKGLVQMPVQLSDGSELRLTISRYYTPSGRSIQKPYLPGKEGDYEKDLELRSKRGEYYIADSIKNDPSKRFKTEHGRVVYGGGGITPDYFIPRDSSWQTNYLVQLYGKNIIREFAIEYTNDNRKKLEKLPFAEFDKAVLIDDEQMVRLVKGASAEGIKFNEKEYSRSKNYIRTQIKALVARYIYQKGNKGGLNNEYFKVMGEADDTYQKALKLFDRATKLEHGMFTYNQPERK
>NZ_CP053435.1|WP_171738274.1|731225_731681_-|hypothetical-protein
MKHVLLMLLLGSAVSAFGQASVAYYPFSSLVTVSTNADRALWLDARVQTNTLFGSLSTTLCPMVNVVRRDQVNYYTGLGVRFNPLNGLDNRDVLEGYSLHVGVRVKPIPFMPNLRVAFEIAPYSRKDFKVGNLQSFLGFAYQFSKKTEVFK
>NZ_CP053435.1|WP_171738275.1|731785_733666_-|gliding-motility-associated-C-terminal-domain-containing-protein
MAKRLWYLIGGWLALAAPSPLRADHLVGGDLTMTYLGKPGLFRITMNQYWNETNNTGDYSNDAQQEVFVFSRRTNTFMNSILLRQTHKQPVTYQNPACARANRLQTVEVRFDSLFQFDSRYTDPEGYYLVWERCCRNGSVMNIRNPAQTGFVLYLQFPPPTGETPNSSPNFTLAAGDYVCLNQAYQLNFSAQDSDGDQLTYRLVTPWAGYTNPAQRRGTVISRSSYPTVVWQDGFSDGAVIPGPAPLRIDPNTGILSLTAGQTGLFAFAVEVTESRNGHPIGVARREFQLLVTDCSKTLLSPPVITRSGQPVETVTLCDTDSATLAVPPGTDYTYQWQRDRANLPNATSATFTASVPGLYTVVKSATGGCARDTVSQPVQVIRSTATTVRFDSLLPICEPNISPIMLTASPLGGQFTGPGVTGTRFDPAIAGVGQYVLTYSGTDAAGCRFSARRTAIVQQPVRLTVPTGINLRRGDTVVLAASSSEPLATAVWSPSNGLSNAYVLRPGASPQQSQTYVLRVTTPAGCTATAEVPVTVLGGVHIPSAFSPNGDGLNDTWELKGVITLPTCEVTIFDRWGSVLFHSTGYAQPWDGTHQGKPVERGVYTYQIRLTDQPGTYRGSLTVLR
>NZ_CP053435.1|WP_171738276.1|733961_735440_-|Fe-S-cluster-assembly-protein-SufB
MSKDVEILESITNSEYKYGFETLIEADEAPAGLDEGTIRFISAKKNEPEWLLENRLKAFRLWQEMIEPHWPNVKYPKIDYQAIKYYSAPKQKKTVGSLDEIDPELLDTFNRLGISLSEQKRLTGVVDEPQGERPQVAVDAVMDSVSVATTFKKDLAERGIIFCSISEAVHEHPELVKKYMGSVVPAKDNYFAALNAAVFTDGSFCYIPKGVRCPMELSTYFRINAAGTGQFERTLIIADEGSYVSYLEGCTAPMRDENQLHAAVVELIAHANAEIKYSTVQNWYPGDKDGKGGIYNFVTKRGICDGPNAKISWTQVETGSAITWKYPSVILKGDNSIGEFYSVAVTNNMQQADTGTKMVHIGKNTKSRIVSKGISAGKSQNSYRGLVQVLKRAENARNYSQCDSLLLGDKCGAHTFPYLEVNNPSATVEHEATTSKIGEDQLFYCNQRGIPTEQAVALIINGYAKEVLNQLPMEFAVEAQKLLAISLEGSVG
>NZ_CP053435.1|WP_171738277.1|735658_736369_-|hypothetical-protein
MKSTLLLAFILLGGLFVFTACTSDSVSLQPNQPGVLYQSNFQQNSDGWEADYTDYGTQIADIQFQSAWTTLPKPLDTSRKAIMLSSMNRSDDVFMFLKRKLTGLQPNTDYKLLFDIELASSYANNSVGIGGSPGGSVFLKAGASASEPKKQLTNGFYELSIDKGNQSTGGRDVTLLGTIGAGDDVTDYKLITRSNSDNLLTARTNAQGELWLVVGTDSGYEGLTTLYYSSIRVTAR
>NZ_CP053435.1|WP_171738278.1|736441_736840_-|DoxX-family-protein
MNNLSANQLAQLVIRIGLGINMLMHGLVRLPKLKTFVAKTGAGFANTILPELLTSAFLYTLPFVELTSGILILLGGQFSKWGYFLGGLVVGALLFGTTLKEDWAGAGNQLVYVIAFYLALRGLDSSGRSHYR
>NZ_CP053435.1|WP_171738279.1|736880_737147_-|hypothetical-protein
MNSTNNHAYNPAEDENQGVLTKLAQGEEANNGVSQVEYMNPVRAQGPEPVKEEVNDSDTDANGVSNALLEAEDVANGDVEVDTGDETD
>NZ_CP053435.1|WP_171738280.1|737168_737438_-|hypothetical-protein
MVTLIDHLTPSDDVELIGSRIGRLDPDNFSNQSGAAMEDDEADEADDVTEDNGLYDEPTDEDGDPTGEHDHHQDDNYALGGHVTRSGSV
>NZ_CP053435.1|WP_171738281.1|737535_738330_+|alpha/beta-hydrolase
MRSFYLIACLLISLLTNAQTNREPLFTSFDGTKIHYDVIGEGKPVVLLHGFITNGESWKRAPVWQALADAGFRVVTLDLRGNGRSDKPHSAEAYRDDAELKDVMALMKHLGLTNYDVVGYSRGAILTAKLLTLDKQVRRAVMGGMSADFTAPDWYRRKNFFEALTRPGSHPELQGAIDYANRTGADTVVLARLQEFQPTATRAELGKIKVPLLVVNGDQDRDNGDPQSLVDAVPGSRLVVVPGNHGAAMSTPEFAKAVVEFLRN

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Crispr_ID: NZ_CP053435_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053435_2

726497-726766

Orphan

Consensus_repeat	Method
GCTGTTGCGGTCGTCGCGGTTGAA	CRISPRCasFinder

4 spacers

The CRISPR arrays of NZ_CP053435_2

>merge|NZ_CP053435|2|726497-726766|CRISPRCasFinder
ATTGTTCCGATCGTCGCGGTTGAACCGAGGGCGCGATTCCGAGTCGCTAGAACGGTTGTCGCGGTCGCCCCGGTTAAACCAGGTGCGCTGGTCAGAGTTGGTATCCCGGTCGCGGTTGGAGCGTGGCCGGTTGTTGTCGTTATTGCGGTCGTCCCGATTGAAACGTGGTCGTGATTCCGAACTGCTGTTGCGGTCGTCGCGGTTGAAGCGCGGGCGGTCACTGCGGTCATTGTCACGTGCCCCTCCGCTGTTGCGGTCGTCGCGGTTAAA

>NZ_CP053435|2|2|726497-726766|CRISPRCasFinder
ATTGTTCCGATCGTCGCGGTTGAA	CCGAGGGCGCGATTCCGAGTCGCTAGAACG
GTTGTCGCGGTCGCCCCGGTTAAA	CCAGGTGCGCTGGTCAGAGTTGGTATCCCGGTCGCGGTTGGAGCGTGGCCGGTTGTTGTC
GTTATTGCGGTCGTCCCGATTGAA	ACGTGGTCGTGATTCCGAACT
GCTGTTGCGGTCGTCGCGGTTGAA	GCGCGGGCGGTCACTGCGGTCATTGTCACGTGCCCCTCC
GCTGTTGCGGTCGTCGCGGTTAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053435.1\|WP_171738267.1\|719279_720614_+\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NZ_CP053435.1\|WP_171742048.1\|721537_721777_+\|acyl-carrier-protein	unknown	unknown	gnl\|CDD\|179197
NZ_CP053435.1\|WP_171738033.1\|720666_721418_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129
NZ_CP053435.1\|WP_171738269.1\|722591_723677_-\|glycine-cleavage-system-aminomethyltransferase-GcvT	unknown	unknown	gnl\|CDD\|234742
NZ_CP053435.1\|WP_171738277.1\|735658_736369_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053435.1\|WP_171738270.1\|724279_724921_-\|deoxyribose-phosphate-aldolase	unknown	unknown	gnl\|CDD\|188646
NZ_CP053435.1\|WP_171738265.1\|716398_717517_+\|HlyD-family-secretion-protein	unknown	unknown	gnl\|CDD\|224482
NZ_CP053435.1\|WP_171738280.1\|737168_737438_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053435.1\|WP_171738281.1\|737535_738330_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP053435.1\|WP_171738273.1\|729443_731174_+\|S41-family-peptidase	unknown	unknown	gnl\|CDD\|223864
NZ_CP053435.1\|WP_171738278.1\|736441_736840_-\|DoxX-family-protein	unknown	unknown	unknown
NZ_CP053435.1\|WP_171738276.1\|733961_735440_-\|Fe-S-cluster-assembly-protein-SufB	unknown	unknown	gnl\|CDD\|236990
NZ_CP053435.1\|WP_171738263.1\|714316_715672_-\|NAD-dependent-succinate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143418
NZ_CP053435.1\|WP_171738279.1\|736880_737147_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053435.1\|WP_171738274.1\|731225_731681_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053435.1\|WP_171738268.1\|721838_722549_-\|2-phosphosulfolactate-phosphatase	unknown	unknown	gnl\|CDD\|377205
NZ_CP053435.1\|WP_171738264.1\|715737_716223_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP053435.1\|WP_171738266.1\|717606_719211_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|129794
NZ_CP053435.1\|WP_171738272.1\|727241_729215_+\|acetoacetate--CoA-ligase	unknown	unknown	gnl\|CDD\|235134
NZ_CP053435.1\|WP_171738275.1\|731785_733666_-\|gliding-motility-associated-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|372639

Protein	Function_ID	Function_description	E-value
NZ_CP053435.1\|WP_171738267.1\|719279_720614_+\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	3.75812e-36
NZ_CP053435.1\|WP_171742048.1\|721537_721777_+\|acyl-carrier-protein	gnl\|CDD\|179197	PRK00982, acpP, acyl carrier protein; Provisional.	7.86543e-19
NZ_CP053435.1\|WP_171738033.1\|720666_721418_-\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	1.31271e-32
NZ_CP053435.1\|WP_171738269.1\|722591_723677_-\|glycine-cleavage-system-aminomethyltransferase-GcvT	gnl\|CDD\|234742	PRK00389, gcvT, glycine cleavage system aminomethyltransferase GcvT.	0
NZ_CP053435.1\|WP_171738270.1\|724279_724921_-\|deoxyribose-phosphate-aldolase	gnl\|CDD\|188646	cd00959, DeoC, 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.	2.74373e-35
NZ_CP053435.1\|WP_171738265.1\|716398_717517_+\|HlyD-family-secretion-protein	gnl\|CDD\|224482	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms].	7.75522e-74
NZ_CP053435.1\|WP_171738281.1\|737535_738330_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	4.6975e-22
NZ_CP053435.1\|WP_171738273.1\|729443_731174_+\|S41-family-peptidase	gnl\|CDD\|223864	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane].	1.75477e-96
NZ_CP053435.1\|WP_171738276.1\|733961_735440_-\|Fe-S-cluster-assembly-protein-SufB	gnl\|CDD\|236990	PRK11814, PRK11814, cysteine desulfurase activator complex subunit SufB; Provisional.	0
NZ_CP053435.1\|WP_171738263.1\|714316_715672_-\|NAD-dependent-succinate-semialdehyde-dehydrogenase	gnl\|CDD\|143418	cd07100, ALDH_SSADH1_GabD1, Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 1-like. Succinate-semialdehyde dehydrogenase 1 (SSADH1, GabD1, EC=1.2.1.16) catalyzes the NADP(+)-dependent oxidation of succinate semialdehyde (SSA) to succinate. SSADH activity in Mycobacterium tuberculosis (Mtb) is encoded by both gabD1 (Rv0234c) and gabD2 (Rv1731). The Mtb GabD1 SSADH1 reportedly is an enzyme of the gamma-aminobutyrate shunt, which forms a functional link between two TCA half-cycles by converting alpha-ketoglutarate to succinate.	0
NZ_CP053435.1\|WP_171738268.1\|721838_722549_-\|2-phosphosulfolactate-phosphatase	gnl\|CDD\|377205	pfam04029, 2-ph_phosp, 2-phosphosulpholactate phosphatase. Thought to catalyze 2-phosphosulpholactate = sulpholactate + phosphate. Probable magnesium cofactor. Involved in the second step of coenzyme M biosynthesis. Inhibited by vanadate in Methanococcus jannaschii. Also known as the ComB family.	4.72905e-98
NZ_CP053435.1\|WP_171738264.1\|715737_716223_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	7.04991e-11
NZ_CP053435.1\|WP_171738266.1\|717606_719211_+\|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.25136e-120
NZ_CP053435.1\|WP_171738272.1\|727241_729215_+\|acetoacetate--CoA-ligase	gnl\|CDD\|235134	PRK03584, PRK03584, acetoacetate--CoA ligase.	0
NZ_CP053435.1\|WP_171738275.1\|731785_733666_-\|gliding-motility-associated-C-terminal-domain-containing-protein	gnl\|CDD\|372639	pfam13585, CHU_C, C-terminal domain of CHU protein family. The function of this C-terminal domain is not known; there are several conserved tryptophan and asparagine residues.	3.28259e-28

>NZ_CP053435.1|WP_171738270.1|724279_724921_-|deoxyribose-phosphate-aldolase
MNHLFPYIERTLLHPGVTISEQYEVLDEVTQLSLAGMTVAPFWVRKFRRELGDKHPAVLATVIGYPYGYQRTEAKQLELELALKDGASEIEVVVNTSALFSSSSGWLKIELAKLVALAHAQEKLLTVILESTLLDSDQINRLIKLAADAGADFLKNATGTLQAAFTLETALQFRRDVPRSVGVKIVADGATEEQLEALVAAEVDRLSLSHRPD
>NZ_CP053435.1|WP_171738269.1|722591_723677_-|glycine-cleavage-system-aminomethyltransferase-GcvT
MSLKQVPLHHIHQQSGAKIVPFAGFEMPVRYSSDLDEHNTVRNAVGIFDVSHMGEFILKGEGALDLIQRVSANDASTLFDGKVQYSYLPNGRGGIVDDLLVYRISEVEYMLVVNASNIEKDWNWISEHNTQGVDMVNISDGMCLFAVQGPLAAKALESLTPADLEMTYYTFEKTDFAGYANVIVSATGYTGAGGFEIYVSNHQAEGVWNAIMEAGKPYGIKPIGLGARDTLRLEMGYNLYGNDITDETSPLEAGLGWVTKFTHDFIDADRLKQQKEQGVERKLVGFEMIDRGIPRGHYELTDADGTKIGEVTSGTQSPTLGKGIGLGYVPVAFSKLGSELFVKVRDKLLKAQVVKLPFVKK
>NZ_CP053435.1|WP_171738268.1|721838_722549_-|2-phosphosulfolactate-phosphatase
MKQIDVCLTPDLLHLHTTENTIVVVADVFRATSCMVTAFAHGVASIIPVATIDECRVWQERGYLAAAERNARRVDGFELDNSPFTYMDDRIRGANIAMTTTNGTLAITRSRNAVKVLVGSFLNLDAIARYLKTEPYDVLVLCAGWKGRVNLEDTLFAGALVDRLKDGFAMAEDSAIMANRLYCDGKNNLVSYMANASHIRRLQRLGIQKDITYCLQHDLYDVVPVLRGTALVSMAV
>NZ_CP053435.1|WP_171742048.1|721537_721777_+|acyl-carrier-protein
MKERVIEILKNFGISETAITDDVNFVRDLGMDSLDTVDLIMQLEQEFGVRIPDEDYSKLTTLQGVLQYLRYEQQVTVNA
>NZ_CP053435.1|WP_171738033.1|720666_721418_-|IS5-family-transposase
MRRYEITDQQWQQIAHLLPGKVGHVGRSAVDNRLFINAVIWIARSGAPWRDLPERFGPWNSVYQRFRRWAKAGVWKTVFDELQEPDLDWLMIDSTTVRAHQHAAGPKKSDPASECLGQSVGGWTTKIHAVVDALGNPMRLILSVGQRADITQAKGLLTGYETDAVLADRGYDANELIDWLTESHTQVVIPSKKNRLADRQIDENLYKERNQVERYFNKLKQYRRVATRYEKTAVSFAGFIYLSSALILLA
>NZ_CP053435.1|WP_171738267.1|719279_720614_+|TolC-family-protein
MKPTVLIIASLFAAGTVQAQNQAIQVPDDLRALVQQANANYSVLKQQQQQIQAGDLRVDIARSAMKPNVNGNASYQYLTPVAKATLPVDGVNRTIQFQPNHNVNAYVGVGQTIYDWGRTNAAVQQATGNAQILRRSLEITQQNLAYQVAAAYYSIGFLQQSLAVQDSVIKTAGANVRLLATRLQNGDALEYDVLTQQVRVKTAQNRRVEIQNQLERQIALLTYLTGNLNPTVAGAASQFNLEMAGRNITTQPYNLDGDLQSVVAGNKEVQLAQDRVRQAETDVLINQLTGRPSLSFSGSAGYRNGYLPEINTPKFNVAAGVALSVPIYAGKRYQLQNQAAQLNLNASRYAVENTNAQLRQNIAQLNADIRSNQTRLANLETQVQQARKALQIANARLRNGVITNVELQSAETGVEEAELGRLNFQYQLLLNQLELKRLLGETLF
>NZ_CP053435.1|WP_171738266.1|717606_719211_+|DHA2-family-efflux-MFS-transporter-permease-subunit
MATQTMSPPAPPMGLRRWAVVVTAISAAIIELIDTSIVNVGLTDIAGNLGVTIEDVAWVVTSYAIANVIVIPMTGFLQRYFGRKNYYIGSIILFTVASYGCGLSDSLWMLILFRFLQGVGGGALLSTSQGLMFDAFPPAQRPVASALFGMGIVLGPTLGPTLGGYIIDNYHWSWMFYINVPIGILAVFMSSTFIDKKEDEININRRAIHIDQIGILLLAVGIGSLQYVLERGEADDWFDSKTILWLSVAAIIAIPLFVWWELRGTREPVVDLRTLKNRNLTIGSILIVVVGYGLFTSVLLFPLFAQRIVGLTATKTGQLLIPGGLVTLPMFAIVGRMLAKGVSPRLIVALGYVAFGSFCFMMSTYNADASSGDFIQALIIRGIGLALVNVPLINQSVSTLEPRQLPTGIAIVNMMRQIGGAFGVAITNTYVTQRTAVHRSDLVSNLQPGDMITTERITALTQGLVARGMNAFDAVSGAYKTLDAIISRQALMLAYLDTFQLAGMFFVVTSPLLLLLKRKKVDAATAKAIADAAH
>NZ_CP053435.1|WP_171738265.1|716398_717517_+|HlyD-family-secretion-protein
MATVMTKEEITDTEEKSGLRTYLPRIIIGLVLLVGGYFGYQAFRHSQQYETTDNAQIEGNSAPVLARVAGYVQSVSVDDYANVKKGQLLVTIDPQEYDVALAQAEADYQQSLADLENARADLQNAQASARNVAQNLRVAQSNADVQASRRDKAQNDLKRDQNLYREQSLTQKQLEDSRSAADVQTRQYTANVEQISLARTSQGIAQAGIAKAQANIQKIQAVLKVKQAAIDNAKLRVGYARLTAPIDGKIGRKNVVVGQYVQPGQNLFTIVADSTFWVVANFKETQLEKMHLGQLVDIKLDAYPDLDIKGRIASLSEATGARFALLPPDNASGNFVKITQRVPVKIEIQNPEKYRNQLRAGLSVEAEVRVAD
>NZ_CP053435.1|WP_171738264.1|715737_716223_-|MarR-family-transcriptional-regulator
MIVETDKKNFDFNQFRAIRGRSIGRLLWRLKRYMDNFVEPRLHALGYTNFKMSYLMVLAHIDEGGITNNELAKRACVTKQMMSKLVSLLETDGYIHIEKNPTDSRSSVIFLNERGKELFIALRDCMQEGRDRFDAIVGHDRMELVIDTMVELVTELEKDEQ
>NZ_CP053435.1|WP_171738263.1|714316_715672_-|NAD-dependent-succinate-semialdehyde-dehydrogenase
MFSSINPYNQKKLKTYRADSPAVIERKLKQADRAFADWSALSLQERLDALRRVGEHLTANNQQLGALITSEMGKTLKEAVAEIDKCALSCHFYADHAAEFLADQTIQTEARSSFITYQPLGPVLAIMPWNFPFWQVFRFAIPGLIAGNVGLLKHAPNVFGCALAIDEVFRTCGLPEGVFQSLLIDVAPVDGLLKDRRVKAVTLTGSSRAGASVATIAGSQIKKSVLELGGSDALLVLADADLEKAAETAVRSRMQNAGQSCIAAKRFIVEKAVKKPFTELVLHYIEQIRQGDPTDDDTTMGPMARLDLADSIERQCRQSVAKGAKLLTGGNRDGCNVQPMLLHKVKPGMPAYDEETFGPLAVLIEAKNESDAVRLANLSDFGLGSAIWTEDIAKADRLARQLQVGSVFVNGLMRSDARVPFGGIKQSGFGRELSEIGLKEFVNVKTVWIEG
>NZ_CP053435.1|WP_171738272.1|727241_729215_+|acetoacetate--CoA-ligase
MPRPTLTPLYKPDQRTVDQSILKQYMNWLFIKKGLYFRDYDDLWDWSVTDLEDFWESIYQFFDVQSHTPYHEVVLKPNRSEMIGTEWFTGATLNYAEYLFRHKNDQRAALLFASERQRLVAISWDTLERQVAAVATYLRQQGVGVGDRVVSVLPNIPQAVVAFLATNAIGAVWSSCSPDFGTASIVDRFQQIEPKVLIAADGYTYNGKPIDKTEAMRELRVSLPTLQRVIWVPYLDASSKLERATLWKDVLDTPAPDGLEFEPVPFEHPIWVLYSSGTTGKPKAITHSVGGCLLEHLKVLALHQDVHVGERYFWYSTTGWMMWNFAVGSLLVGATLVLYDGAAGYPDLNVLWKLAEDARIAHFGGGAAFYLACLREGLQPGGSYKLTHLRSIGSTGSPLPPEGFRWIYDAVKPNVWLISFSGGTDVCSGFVGGNPMLPVYEGEIQCRLLGSKVEAFDENAKPVRGELGEMVILEPMPSMPIYFWNDPNNERYRKSYFTEYPGIWRHGDYIQITERNGVIISGRSDATLNRDGVRIGTSEIYSAVESLPEIADSLIVGLEQPGGRYFMPLFVVLREGFTLSDELITRIKQTLRSRFSPRHVPDAVYPIGEVPYTISGKKLETPVKKILSGMDASLATSKDTLRNPASLDQFTGFIISR
>NZ_CP053435.1|WP_171738273.1|729443_731174_+|S41-family-peptidase
MEVGQDFNHEPGGQKGTRGRIHNDKATVRLPMLLGITLAGGMLIGATFFGGAKSLNTIGRGYTKYREILQLIENNYVDTVNTDELVDYSIEKMLEKLDPHTAYMNPQDAVAARAQLEGGFDGIGVEFNIYKDTVYVVTPISGGPSETAGIMSGDKIIKVDNTPLAGSNIENSTVFKALRGKRGTDVKLTILRKGEKEPKVFTITRDRIPTYSVDAAYMVDAKTGYLKINRFSETTYDEFKTALASLKAQGMTQLLMDLRNNPGGYMDRATSIADEFIAGNKLLVYTDGKDNRYDRQTFARIAGQFEEGPLVVLVDEGSASASEIVAGALQDHDRALIVGRRSFGKGLVQMPVQLSDGSELRLTISRYYTPSGRSIQKPYLPGKEGDYEKDLELRSKRGEYYIADSIKNDPSKRFKTEHGRVVYGGGGITPDYFIPRDSSWQTNYLVQLYGKNIIREFAIEYTNDNRKKLEKLPFAEFDKAVLIDDEQMVRLVKGASAEGIKFNEKEYSRSKNYIRTQIKALVARYIYQKGNKGGLNNEYFKVMGEADDTYQKALKLFDRATKLEHGMFTYNQPERK
>NZ_CP053435.1|WP_171738274.1|731225_731681_-|hypothetical-protein
MKHVLLMLLLGSAVSAFGQASVAYYPFSSLVTVSTNADRALWLDARVQTNTLFGSLSTTLCPMVNVVRRDQVNYYTGLGVRFNPLNGLDNRDVLEGYSLHVGVRVKPIPFMPNLRVAFEIAPYSRKDFKVGNLQSFLGFAYQFSKKTEVFK
>NZ_CP053435.1|WP_171738275.1|731785_733666_-|gliding-motility-associated-C-terminal-domain-containing-protein
MAKRLWYLIGGWLALAAPSPLRADHLVGGDLTMTYLGKPGLFRITMNQYWNETNNTGDYSNDAQQEVFVFSRRTNTFMNSILLRQTHKQPVTYQNPACARANRLQTVEVRFDSLFQFDSRYTDPEGYYLVWERCCRNGSVMNIRNPAQTGFVLYLQFPPPTGETPNSSPNFTLAAGDYVCLNQAYQLNFSAQDSDGDQLTYRLVTPWAGYTNPAQRRGTVISRSSYPTVVWQDGFSDGAVIPGPAPLRIDPNTGILSLTAGQTGLFAFAVEVTESRNGHPIGVARREFQLLVTDCSKTLLSPPVITRSGQPVETVTLCDTDSATLAVPPGTDYTYQWQRDRANLPNATSATFTASVPGLYTVVKSATGGCARDTVSQPVQVIRSTATTVRFDSLLPICEPNISPIMLTASPLGGQFTGPGVTGTRFDPAIAGVGQYVLTYSGTDAAGCRFSARRTAIVQQPVRLTVPTGINLRRGDTVVLAASSSEPLATAVWSPSNGLSNAYVLRPGASPQQSQTYVLRVTTPAGCTATAEVPVTVLGGVHIPSAFSPNGDGLNDTWELKGVITLPTCEVTIFDRWGSVLFHSTGYAQPWDGTHQGKPVERGVYTYQIRLTDQPGTYRGSLTVLR
>NZ_CP053435.1|WP_171738276.1|733961_735440_-|Fe-S-cluster-assembly-protein-SufB
MSKDVEILESITNSEYKYGFETLIEADEAPAGLDEGTIRFISAKKNEPEWLLENRLKAFRLWQEMIEPHWPNVKYPKIDYQAIKYYSAPKQKKTVGSLDEIDPELLDTFNRLGISLSEQKRLTGVVDEPQGERPQVAVDAVMDSVSVATTFKKDLAERGIIFCSISEAVHEHPELVKKYMGSVVPAKDNYFAALNAAVFTDGSFCYIPKGVRCPMELSTYFRINAAGTGQFERTLIIADEGSYVSYLEGCTAPMRDENQLHAAVVELIAHANAEIKYSTVQNWYPGDKDGKGGIYNFVTKRGICDGPNAKISWTQVETGSAITWKYPSVILKGDNSIGEFYSVAVTNNMQQADTGTKMVHIGKNTKSRIVSKGISAGKSQNSYRGLVQVLKRAENARNYSQCDSLLLGDKCGAHTFPYLEVNNPSATVEHEATTSKIGEDQLFYCNQRGIPTEQAVALIINGYAKEVLNQLPMEFAVEAQKLLAISLEGSVG
>NZ_CP053435.1|WP_171738277.1|735658_736369_-|hypothetical-protein
MKSTLLLAFILLGGLFVFTACTSDSVSLQPNQPGVLYQSNFQQNSDGWEADYTDYGTQIADIQFQSAWTTLPKPLDTSRKAIMLSSMNRSDDVFMFLKRKLTGLQPNTDYKLLFDIELASSYANNSVGIGGSPGGSVFLKAGASASEPKKQLTNGFYELSIDKGNQSTGGRDVTLLGTIGAGDDVTDYKLITRSNSDNLLTARTNAQGELWLVVGTDSGYEGLTTLYYSSIRVTAR
>NZ_CP053435.1|WP_171738278.1|736441_736840_-|DoxX-family-protein
MNNLSANQLAQLVIRIGLGINMLMHGLVRLPKLKTFVAKTGAGFANTILPELLTSAFLYTLPFVELTSGILILLGGQFSKWGYFLGGLVVGALLFGTTLKEDWAGAGNQLVYVIAFYLALRGLDSSGRSHYR
>NZ_CP053435.1|WP_171738279.1|736880_737147_-|hypothetical-protein
MNSTNNHAYNPAEDENQGVLTKLAQGEEANNGVSQVEYMNPVRAQGPEPVKEEVNDSDTDANGVSNALLEAEDVANGDVEVDTGDETD
>NZ_CP053435.1|WP_171738280.1|737168_737438_-|hypothetical-protein
MVTLIDHLTPSDDVELIGSRIGRLDPDNFSNQSGAAMEDDEADEADDVTEDNGLYDEPTDEDGDPTGEHDHHQDDNYALGGHVTRSGSV
>NZ_CP053435.1|WP_171738281.1|737535_738330_+|alpha/beta-hydrolase
MRSFYLIACLLISLLTNAQTNREPLFTSFDGTKIHYDVIGEGKPVVLLHGFITNGESWKRAPVWQALADAGFRVVTLDLRGNGRSDKPHSAEAYRDDAELKDVMALMKHLGLTNYDVVGYSRGAILTAKLLTLDKQVRRAVMGGMSADFTAPDWYRRKNFFEALTRPGSHPELQGAIDYANRTGADTVVLARLQEFQPTATRAELGKIKVPLLVVNGDQDRDNGDPQSLVDAVPGSRLVVVPGNHGAAMSTPEFAKAVVEFLRN

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP053435_2	2.3\|726659\|21\|NZ_CP053435\|CRISPRCasFinder	726659-726679	21	NZ_CP053435.1	726158-726178	0	1.0
NZ_CP053435_2	2.4\|726704\|39\|NZ_CP053435\|CRISPRCasFinder	726704-726742	39	NZ_CP053435.1	726203-726241	0	1.0

1. spacer 2.3|726659|21|NZ_CP053435|CRISPRCasFinder matches to position: 726158-726178, mismatch: 0, identity: 1.0

acgtggtcgtgattccgaact	CRISPR spacer
acgtggtcgtgattccgaact	Protospacer
*********************

2. spacer 2.4|726704|39|NZ_CP053435|CRISPRCasFinder matches to position: 726203-726241, mismatch: 0, identity: 1.0

gcgcgggcggtcactgcggtcattgtcacgtgcccctcc	CRISPR spacer
gcgcgggcggtcactgcggtcattgtcacgtgcccctcc	Protospacer
***************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

452194 : 459753

Sulfolobus_monocaudavirus(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_171738070.1\|452194_453010_+	polyprenol monophosphomannose synthase	A0A0N7A8R9	Sulfolobus_monocaudavirus	2.7e-22	35.3
WP_171738071.1\|453058_453319_-	DUF167 domain-containing protein	NA	NA	NA	NA
WP_171738072.1\|453371_454274_-	NAD(P)-dependent oxidoreductase	A0A0P0YMS6	Yellowstone_lake_phycodnavirus	1.0e-09	32.9
WP_171738073.1\|454347_455049_-	peptidylprolyl isomerase	A0A076FI46	Aureococcus_anophage	7.9e-10	27.8
WP_171738074.1\|455055_455682_-	ATP-binding cassette domain-containing protein	F2Y2R6	Organic_Lake_phycodnavirus	1.6e-09	29.9
WP_171738075.1\|455862_456438_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.5e-22	35.3
WP_171738076.1\|456441_456831_+	hypothetical protein	NA	NA	NA	NA
WP_171738077.1\|456897_457128_-	DUF4834 domain-containing protein	NA	NA	NA	NA
WP_171738078.1\|457233_458772_-	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA
WP_171738079.1\|458856_459753_-	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	1.0e-06	25.6

DBSCAN-SWA_2

1570599 : 1604603

Paenibacillus_phage(14.29%)

transposase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_171738940.1\|1570599_1571976_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_171738941.1\|1572326_1573541_+	VWA domain-containing protein	NA	NA	NA	NA
WP_171738942.1\|1574101_1574863_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	3.2e-09	40.5
WP_171742085.1\|1574834_1575440_+	TIR domain-containing protein	A0A0S2MYG4	Enterococcus_phage	7.7e-54	57.1
WP_171738943.1\|1575455_1576358_+	DUF4231 domain-containing protein	NA	NA	NA	NA
WP_171738944.1\|1576538_1577318_+	hypothetical protein	Q7Y4L3	Streptococcus_phage	1.0e-10	33.3
WP_171738945.1\|1577941_1578760_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_171738946.1\|1578828_1579719_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_171738947.1\|1580244_1580445_+	DUF4177 domain-containing protein	NA	NA	NA	NA
WP_171738948.1\|1580761_1581424_-	HAD family phosphatase	A0A1D8KPI1	Synechococcus_phage	5.5e-13	31.0
WP_171738949.1\|1581481_1582705_-	MFS transporter	NA	NA	NA	NA
WP_171738950.1\|1582790_1583453_-	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA
WP_171738951.1\|1583540_1584389_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_171738952.1\|1584440_1584674_+	hypothetical protein	NA	NA	NA	NA
WP_171738953.1\|1584678_1585521_-	hypothetical protein	NA	NA	NA	NA
WP_171738954.1\|1585522_1586548_-	hypothetical protein	NA	NA	NA	NA
WP_171738955.1\|1586782_1587928_+	VCBS repeat-containing protein	NA	NA	NA	NA
WP_171738956.1\|1588008_1588416_+	hypothetical protein	NA	NA	NA	NA
WP_171738957.1\|1588616_1590119_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_171738958.1\|1590282_1591173_+	sugar phosphate isomerase/epimerase	NA	NA	NA	NA
WP_171738959.1\|1591332_1591851_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_171738960.1\|1591859_1593143_-	acetyl-CoA hydrolase/transferase family protein	NA	NA	NA	NA
WP_171742086.1\|1593284_1594691_-	beta-glucosidase	A0A0B5JD41	Pandoravirus	7.2e-55	31.6
WP_171738961.1\|1594825_1595221_-	hypothetical protein	NA	NA	NA	NA
WP_171738962.1\|1595334_1596357_-	bile acid:sodium symporter	NA	NA	NA	NA
WP_171738963.1\|1596963_1597191_+	hypothetical protein	NA	NA	NA	NA
WP_171738964.1\|1597524_1598388_+	hypothetical protein	NA	NA	NA	NA
WP_171738965.1\|1598435_1599020_+	DUF4255 domain-containing protein	NA	NA	NA	NA
WP_171738966.1\|1599016_1600108_+	hypothetical protein	NA	NA	NA	NA
WP_171738967.1\|1600113_1601529_+\|tail	phage tail sheath family protein	NA	NA	NA	NA
WP_171738968.1\|1601558_1603619_+\|tail	phage tail sheath family protein	J9PVC2	Bacillus_phage	2.1e-26	34.8
WP_171738969.1\|1603648_1604083_+\|tail	phage tail protein	A0A059XP41	uncultured_phage	2.5e-22	44.2
WP_171738970.1\|1604093_1604603_+\|tail	phage tail protein	NA	NA	NA	NA

DBSCAN-SWA_3

3834537 : 3890281

Shigella_phage(33.33%)

transposase,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_171740635.1\|3834537_3835920_-\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	NA	NA	NA	NA
WP_171742208.1\|3835971_3836994_-	DUF2236 domain-containing protein	NA	NA	NA	NA
WP_171742209.1\|3837094_3837856_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_171740636.1\|3837939_3838320_-	response regulator	Q6XM27	Feldmannia_irregularis_virus	2.6e-07	25.6
WP_171740637.1\|3838668_3839106_+	hypothetical protein	NA	NA	NA	NA
WP_171740638.1\|3839216_3842915_-	PAS domain S-box protein	A0A1V0SGX0	Hokovirus	9.8e-59	27.8
WP_171740639.1\|3843107_3843443_+	PKD domain-containing protein	NA	NA	NA	NA
WP_171740640.1\|3843449_3844499_+	hypothetical protein	NA	NA	NA	NA
WP_171740641.1\|3845522_3846941_-	WG repeat-containing protein	NA	NA	NA	NA
WP_171740642.1\|3846996_3847572_-\|protease	retroviral-like aspartic protease family protein	NA	NA	NA	NA
WP_171742210.1\|3847756_3849082_-	hypothetical protein	NA	NA	NA	NA
WP_171740643.1\|3849126_3852567_-	hypothetical protein	NA	NA	NA	NA
WP_171740644.1\|3852659_3854150_-	hypothetical protein	NA	NA	NA	NA
WP_171740645.1\|3854206_3854650_-	hypothetical protein	NA	NA	NA	NA
WP_171740646.1\|3854748_3856269_-	hypothetical protein	NA	NA	NA	NA
WP_171740647.1\|3856467_3858090_+	Ig-like domain-containing protein	NA	NA	NA	NA
WP_171740648.1\|3858144_3858627_+	hypothetical protein	NA	NA	NA	NA
WP_171740649.1\|3858716_3859208_+	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_171740650.1\|3859308_3860106_+	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_171740651.1\|3860164_3861517_+	magnesium transporter	NA	NA	NA	NA
WP_171740652.1\|3861671_3862412_+	hypothetical protein	NA	NA	NA	NA
WP_171740653.1\|3862619_3864014_+	DUF418 domain-containing protein	NA	NA	NA	NA
WP_171740654.1\|3864135_3864456_-	hypothetical protein	NA	NA	NA	NA
WP_171740655.1\|3864765_3866082_+	hypothetical protein	NA	NA	NA	NA
WP_171740656.1\|3866182_3868726_+	glycosyltransferase	NA	NA	NA	NA
WP_171740657.1\|3868803_3869145_-	hypothetical protein	NA	NA	NA	NA
WP_171740658.1\|3869253_3870648_-	hypothetical protein	NA	NA	NA	NA
WP_171742211.1\|3870901_3871252_+	hypothetical protein	NA	NA	NA	NA
WP_171740659.1\|3871283_3871682_-	Dabb family protein	NA	NA	NA	NA
WP_171740660.1\|3871717_3872965_-	C4-dicarboxylate transporter DctA	NA	NA	NA	NA
WP_171740661.1\|3872961_3874092_-	glycerate kinase	W6LM47	Streptococcus_phage	2.1e-36	39.0
WP_171740662.1\|3874088_3875432_-	GntP family permease	NA	NA	NA	NA
WP_171740663.1\|3875538_3876405_-	YitT family protein	NA	NA	NA	NA
WP_171740664.1\|3876479_3877691_+	mannonate dehydratase	NA	NA	NA	NA
WP_171740665.1\|3877720_3879169_+	glucuronate isomerase	NA	NA	NA	NA
WP_171740666.1\|3879436_3880441_+	NAD(P)/FAD-dependent oxidoreductase	A0A2K9L162	Tupanvirus	8.1e-16	26.1
WP_171740667.1\|3880470_3880791_+	(2Fe-2S)-binding protein	NA	NA	NA	NA
WP_171740668.1\|3880819_3881341_-	RidA family protein	NA	NA	NA	NA
WP_171740669.1\|3881337_3881865_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_171740670.1\|3881976_3882756_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_171740671.1\|3883874_3884660_+	toll/interleukin-1 receptor domain-containing protein	NA	NA	NA	NA
WP_171740672.1\|3884665_3887698_+	AAA family ATPase	NA	NA	NA	NA
WP_171740673.1\|3887794_3887998_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.1e-07	41.7
WP_171740674.1\|3888020_3888200_-	hypothetical protein	NA	NA	NA	NA
WP_171740675.1\|3888269_3888479_+\|transposase	transposase	NA	NA	NA	NA
WP_171740676.1\|3888566_3889457_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.5e-31	33.5
WP_171740677.1\|3889465_3889711_-	hypothetical protein	NA	NA	NA	NA
WP_171740678.1\|3889987_3890281_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_4

4940194 : 5008428

Paenibacillus_phage(33.33%)

transposase,protease,plate,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_171741443.1\|4940194_4941250_+\|tRNA	tRNA 2-selenouridine(34) synthase MnmH	NA	NA	NA	NA
WP_171742262.1\|4941250_4941838_-	hypothetical protein	NA	NA	NA	NA
WP_171741444.1\|4942023_4943097_+	peptide chain release factor 1	W8EDB3	Pseudomonas_phage	1.4e-05	44.4
WP_171741445.1\|4943379_4944459_-	DNA adenine methylase	NA	NA	NA	NA
WP_171741446.1\|4944482_4945805_-	hypothetical protein	NA	NA	NA	NA
WP_171738357.1\|4945964_4946729_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	6.6e-10	42.3
WP_171737925.1\|4947117_4947624_+\|transposase	IS1 family transposase	A0A0U2RK18	Escherichia_phage	6.9e-24	41.3
WP_171741447.1\|4947620_4948976_-	DGQHR domain-containing protein	NA	NA	NA	NA
WP_171741448.1\|4951213_4952752_-	tagaturonate reductase	NA	NA	NA	NA
WP_171741449.1\|4952914_4953937_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_171741450.1\|4954309_4954888_+	RNA polymerase sigma-70 factor	NA	NA	NA	NA
WP_171741451.1\|4955056_4956094_+	FecR domain-containing protein	NA	NA	NA	NA
WP_171742263.1\|4956357_4959615_+	TonB-dependent receptor	NA	NA	NA	NA
WP_171741452.1\|4959635_4961282_+	RagB/SusD family nutrient uptake outer membrane protein	NA	NA	NA	NA
WP_171741453.1\|4961361_4963017_+	glycoside hydrolase family 28 protein	NA	NA	NA	NA
WP_171741454.1\|4963032_4963791_+	rhamnogalacturonan acetylesterase	NA	NA	NA	NA
WP_171741455.1\|4963855_4964857_+	pectin esterase	NA	NA	NA	NA
WP_171741456.1\|4964867_4966574_+	glycosyl hydrolase 43 family protein	NA	NA	NA	NA
WP_171741457.1\|4966620_4967619_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_171741458.1\|4968058_4973470_+	T9SS type A sorting domain-containing protein	NA	NA	NA	NA
WP_171741459.1\|4973539_4974442_-	hypothetical protein	NA	NA	NA	NA
WP_171741460.1\|4974456_4975272_-	hypothetical protein	NA	NA	NA	NA
WP_171741461.1\|4975268_4976261_-	hypothetical protein	NA	NA	NA	NA
WP_171741462.1\|4976276_4977026_-	J domain-containing protein	NA	NA	NA	NA
WP_171741463.1\|4977084_4978008_-	hypothetical protein	NA	NA	NA	NA
WP_171741464.1\|4978643_4980029_+	hypothetical protein	NA	NA	NA	NA
WP_171741465.1\|4980249_4981647_-	ATP-binding protein	A0A1C9EG55	Acidianus_two-tailed_virus	8.3e-11	31.5
WP_171741466.1\|4981654_4981819_-	hypothetical protein	NA	NA	NA	NA
WP_171741467.1\|4981815_4982307_-	hypothetical protein	NA	NA	NA	NA
WP_171741468.1\|4982269_4983166_-	OmpA family protein	NA	NA	NA	NA
WP_171741469.1\|4983175_4983595_-	hypothetical protein	NA	NA	NA	NA
WP_171741470.1\|4983622_4984021_-	type VI secretion system needle protein Hcp	NA	NA	NA	NA
WP_171741471.1\|4984148_4985522_-	type VI secretion system contractile sheath protein TssC	NA	NA	NA	NA
WP_171741472.1\|4985569_4986028_-	hypothetical protein	NA	NA	NA	NA
WP_171741473.1\|4986201_4988682_-\|protease	ATP-dependent Clp protease ATP-binding subunit	K4FB40	Cronobacter_phage	1.8e-104	35.6
WP_171741474.1\|4988702_4991177_-	type VI secretion system protein TssR	NA	NA	NA	NA
WP_171741475.1\|4991173_4992058_-	PKD domain-containing protein	NA	NA	NA	NA
WP_171741476.1\|4992063_4992582_-	type VI secretion system transmembrane protein TssO	NA	NA	NA	NA
WP_171741477.1\|4992608_4993094_-	hypothetical protein	NA	NA	NA	NA
WP_171741478.1\|4993162_4994095_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_171741479.1\|4994099_4995734_-	hypothetical protein	NA	NA	NA	NA
WP_171741480.1\|4995744_4997637_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_171741481.1\|4997673_4998108_-	GPW/gp25 family protein	NA	NA	NA	NA
WP_171741482.1\|4998286_5000017_+	hypothetical protein	NA	NA	NA	NA
WP_171741483.1\|5000113_5001400_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_171741484.1\|5001552_5004372_+	RHS repeat protein	NA	NA	NA	NA
WP_171741485.1\|5004265_5005420_-	hypothetical protein	NA	NA	NA	NA
WP_171741486.1\|5005425_5006304_-	TssN family type VI secretion system protein	NA	NA	NA	NA
WP_171741487.1\|5006356_5006650_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_171741488.1\|5006720_5007119_-	LytTR family transcriptional regulator	NA	NA	NA	NA
WP_171738357.1\|5007663_5008428_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	6.6e-10	42.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP053435

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection