CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP053580	Salmonella enterica strain 94-0093 plasmid unnamed, complete sequence	0 crisprs	NA	0	0	1	0
NZ_CP053581	Salmonella enterica strain 94-0093 chromosome, complete genome	1 crisprs	DEDDh,DinG,cas3,csa3,WYL	0	1	13	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

69443 : 91872

Streptococcus_phage(75.0%)

transposase,holin,bacteriocin

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_171774006.1\|69443_69896_+\|holin	phage holin family protein	NA	NA	NA	NA
WP_171774007.1\|69892_70186_+	hypothetical protein	NA	NA	NA	NA
WP_171774008.1\|70772_72872_-	peptidase domain-containing ABC transporter	W8CYL7	Bacillus_phage	8.3e-39	28.2
WP_171774009.1\|72864_74139_-	HlyD family secretion protein	NA	NA	NA	NA
WP_171774010.1\|74352_74559_+	hypothetical protein	NA	NA	NA	NA
WP_171774011.1\|74798_76157_-\|transposase	IS1182 family transposase	A0A1X9I5T2	Streptococcus_phage	4.6e-83	39.5
WP_171774012.1\|76360_77719_-\|transposase	IS1182 family transposase	A0A1X9I5T2	Streptococcus_phage	9.4e-84	39.5
WP_171774013.1\|79206_79434_+	hypothetical protein	NA	NA	NA	NA
WP_171774014.1\|79681_80332_+\|transposase	Tn3 family transposase	NA	NA	NA	NA
WP_171774045.1\|80661_82152_+	PhoPQ-regulated protein	NA	NA	NA	NA
WP_171774015.1\|84325_84757_-	hypothetical protein	NA	NA	NA	NA
WP_080096647.1\|85166_85403_+	type II toxin-antitoxin system CcdA family antitoxin	NA	NA	NA	NA
WP_171774016.1\|85490_86033_+	colicin immunity protein Cui	NA	NA	NA	NA
WP_171774046.1\|86077_87715_-	hypothetical protein	NA	NA	NA	NA
WP_171774047.1\|87884_88268_+	Exc2 family lipoprotein	NA	NA	NA	NA
WP_171774017.1\|88722_88941_+	hypothetical protein	NA	NA	NA	NA
WP_171774018.1\|88997_89255_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA
WP_171774019.1\|89254_89683_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_171774020.1\|89698_89956_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_171774048.1\|89958_90168_-	HNH endonuclease	NA	NA	NA	NA
WP_171774021.1\|90513_91872_+\|transposase	IS1182 family transposase	A0A1X9I5T2	Streptococcus_phage	8.5e-85	39.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP053581

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP053581_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053581_1

3497625-3497831

Orphan

I-E

Consensus_repeat	Method
TATCCCCGCTGACGCGGGGAACAC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR

3 spacers

The CRISPR arrays of NZ_CP053581_1

>merge|NZ_CP053581|1|3497625-3497831|CRISPRCasFinder,PILER-CR
TATCCCCGCTGACGCGGGGAACACGCGGCAACCGCCTCTACTGATGGACTGATTTTCGGTTTATCCCCGCTGGCGCGGGGAACACTGGCTGGTCGTCGTCATCACCCGTCGGCTCCTCGGTTTATCCCCGCTGACGCGGGGAACACAGCTGAGTTCTGCTATTTGCCGCATGTTGAGCCGGTTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP053581|1|1|3497625-3497831|CRISPRCasFinder
TATCCCCGCTGACGCGGGGAACAC	GCGGCAACCGCCTCTACTGATGGACTGATTTTCGGTT
TATCCCCGCTGGCGCGGGGAACAC	TGGCTGGTCGTCGTCATCACCCGTCGGCTCCTCGGTT
TATCCCCGCTGACGCGGGGAACAC	AGCTGAGTTCTGCTATTTGCCGCATGTTGAGCCGGTT
TATCCCCGCTGGCGCGGGGAACAC

>NZ_CP053581|1|1|3497681-3497831|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACAC	TGGCTGGTCGTCGTCATCACCCGTCGGCTCCT
CGGTTTATCCCCGCTGACGCGGGGAACAC	AGCTGAGTTCTGCTATTTGCCGCATGTTGAGC
CGGTTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053581.1\|WP_000039834.1\|3491491_3492226_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP053581.1\|WP_111721927.1\|3487297_3488206_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP053581.1\|WP_171775552.1\|3490448_3491402_+\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
NZ_CP053581.1\|WP_171775556.1\|3503046_3505281_-\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP053581.1\|WP_001199956.1\|3498127_3498799_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP053581.1\|WP_171775562.1\|3506685_3509442_+\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NZ_CP053581.1\|WP_171775550.1\|3485848_3487288_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP053581.1\|WP_000036734.1\|3498934_3500233_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP053581.1\|WP_002954403.1\|3510955_3511285_-\|YqcC-family-protein	unknown	unknown	gnl\|CDD\|225640
NZ_CP053581.1\|WP_001290736.1\|3492325_3494038_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_CP053581.1\|WP_001207997.1\|3496724_3497522_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
NZ_CP053581.1\|WP_171775563.1\|3510173_3510956_-\|tRNA-pseudouridine(65)-synthase-TruC	unknown	unknown	gnl\|CDD\|182971
NZ_CP053581.1\|WP_171775554.1\|3494037_3495837_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP053581.1\|WP_171775555.1\|3502180_3502972_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP053581.1\|WP_171775549.1\|3485256_3485862_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP053581.1\|WP_171775551.1\|3488457_3489504_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP053581.1\|WP_079803137.1\|3509705_3510155_-\|flavodoxin	unknown	unknown	gnl\|CDD\|181230
NZ_CP053581.1\|WP_171775560.1\|3505332_3506628_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
NZ_CP053581.1\|WP_000108313.1\|3496272_3496635_+\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP053581.1\|WP_000210862.1\|3500315_3501953_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437

Protein	Function_ID	Function_description	E-value
NZ_CP053581.1\|WP_000039834.1\|3491491_3492226_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	3.28487e-137
NZ_CP053581.1\|WP_111721927.1\|3487297_3488206_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP053581.1\|WP_171775552.1\|3490448_3491402_+\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
NZ_CP053581.1\|WP_171775556.1\|3503046_3505281_-\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP053581.1\|WP_001199956.1\|3498127_3498799_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	2.27998e-154
NZ_CP053581.1\|WP_171775562.1\|3506685_3509442_+\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NZ_CP053581.1\|WP_171775550.1\|3485848_3487288_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP053581.1\|WP_000036734.1\|3498934_3500233_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP053581.1\|WP_002954403.1\|3510955_3511285_-\|YqcC-family-protein	gnl\|CDD\|225640	COG3098, COG3098, Uncharacterized protein conserved in bacteria [Function unknown].	1.25794e-51
NZ_CP053581.1\|WP_001290736.1\|3492325_3494038_-\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_CP053581.1\|WP_001207997.1\|3496724_3497522_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	7.9973e-103
NZ_CP053581.1\|WP_171775563.1\|3510173_3510956_-\|tRNA-pseudouridine(65)-synthase-TruC	gnl\|CDD\|182971	PRK11112, PRK11112, tRNA pseudouridine synthase C; Provisional.	0
NZ_CP053581.1\|WP_171775554.1\|3494037_3495837_-\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP053581.1\|WP_171775555.1\|3502180_3502972_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.74747e-159
NZ_CP053581.1\|WP_171775549.1\|3485256_3485862_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	2.62329e-145
NZ_CP053581.1\|WP_171775551.1\|3488457_3489504_+\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP053581.1\|WP_079803137.1\|3509705_3510155_-\|flavodoxin	gnl\|CDD\|181230	PRK08105, PRK08105, flavodoxin; Provisional.	2.65789e-103
NZ_CP053581.1\|WP_171775560.1\|3505332_3506628_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
NZ_CP053581.1\|WP_000108313.1\|3496272_3496635_+\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
NZ_CP053581.1\|WP_000210862.1\|3500315_3501953_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0

>NZ_CP053581.1|WP_001207997.1|3496724_3497522_-|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>NZ_CP053581.1|WP_000108313.1|3496272_3496635_+|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>NZ_CP053581.1|WP_171775554.1|3494037_3495837_-|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTQAPPSALFPLNPEQLARLQAATTDLTPAQLAWVSGYFWGVLNHQPGTNATVPAPAVEMPGITLISASQTGNARRVAETLRDDLIAAKLNVTLINAGDYKFKQIANEKLLVVVASTQGEGEPAEEAVALHKFLLSKKAPKLDNTAFAVFGLGDTSYEFFCQAGKDFDSRLAELGGERLLDRVDADVEYQAAAAEWRARLVEVLKARAPAAPSVQAAASGAVNDVHSSPYTKEAPLTATLAVNQKITGRESEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDADALIGLLRPLTPRLYSIASSQAEVESEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGDVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAADGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLSRIDMAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDIEAADEFLSELRVERRYQRDVY
>NZ_CP053581.1|WP_001290736.1|3492325_3494038_-|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLTDAERMKRESNFLRGTIAEDLNDGLTGGFHGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTKQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESELHAEAYEWAKKISEHLLPRTRAYAEIWLDQKKVATTDEEPILGATYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKEEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPGRPLKSGLLEIAKIHKGDFRITANQNLIIAGVPESQKAKIEKLARDHGLMNAVKPQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAELGLVGKAPGRYNVHLGGNRMGTRIPRMYRENITESEILDSVDELVGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>NZ_CP053581.1|WP_000039834.1|3491491_3492226_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNDLPKVERVMALAETNSQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQLSPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRANESAAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALEELNAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKQGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP053581.1|WP_171775552.1|3490448_3491402_+|SPI-1-type-III-secretion-system-effector-SopD
MPVTLNFGNHHNYTLNESRLSHLLSADKEKATRIGSWDKLQDHFRSERKDHALEVLYSIIHGQGRGEPGEMEVNIEDMGKIYAFKNLQHLACPAHQDLFKIKMDASQTQFLFMVGDTVISQSRIQDILNLSDNAVVESMNNEERQLFLQICEIIGSNIAWHPELLQASVSTLRKEVTSNVQIKEAVYGLVRPAEAPDHQFVEWQSSLSDDEKSMLTCINAGSFDPITQFCKIGYQEVQGEVAFCMMHPCISYLLHTYSPFAEFKETNAGFLKELNQDYKDYHKNKVFIDAILEKIYLTHERSLHIGENECSRNILLA
>NZ_CP053581.1|WP_171775551.1|3488457_3489504_+|aminopeptidase
MFSATRRFTVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFARMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGCVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKNISTHYGIRFIATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIAHHHGIAASTNPGLNPAYPEGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDIVRIMLPLVKELAKAEKTS
>NZ_CP053581.1|WP_111721927.1|3487297_3488206_-|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVSMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>NZ_CP053581.1|WP_171775550.1|3485848_3487288_-|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTSRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNSVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLPGDKHGAA
>NZ_CP053581.1|WP_171775549.1|3485256_3485862_-|adenylyl-sulfate-kinase
MARHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHHRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKELVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>NZ_CP053581.1|WP_001199956.1|3498127_3498799_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQDYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP053581.1|WP_000036734.1|3498934_3500233_-|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP053581.1|WP_000210862.1|3500315_3501953_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGAQTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAACEHQKRQAK
>NZ_CP053581.1|WP_171775555.1|3502180_3502972_-|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLNIMQRLRDPEGGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSANNSEDVLVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>NZ_CP053581.1|WP_171775556.1|3503046_3505281_-|GTP-diphosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQVEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGN
>NZ_CP053581.1|WP_171775560.1|3505332_3506628_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRVTTRQIITVKVSDLDSFGQGVARHNGKALFIPGLLPEESAEVIITEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVSIALQQRSKSAALARLMKHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIVNVEQCPVLAPQLEALLPRIRACLVSLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLERFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVVGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>NZ_CP053581.1|WP_171775562.1|3506685_3509442_+|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESVIADAKNTQNMLGYVALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMMLSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDASKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVATRLMAPEPAEFIFNPNATFDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPDSLVDLVHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTREEELEPEFLELLDEMDNVAREAKKILG
>NZ_CP053581.1|WP_079803137.1|3509705_3510155_-|flavodoxin
MAEIGIFVGTMYGNSLLVAEEAEAILARQGHSATVFEDPELSDWQQYQDKVVLVVTSTTGQGDLPDSIAPLFHSIKDTLGFQPNLRYGVIALGDSSYPNFCNGGKQFDALLQEQSAQRMGEMLLIDASEYPEPESQSNPWVENWGTLLS
>NZ_CP053581.1|WP_171775563.1|3510173_3510956_-|tRNA-pseudouridine(65)-synthase-TruC
MLEILYQDSWLVAVNKPSGWLVHRSWLDRDEKVVVMQTVRDQIGQHVFTAHRLDRPTSGVLLMGLSSEAGRRLAQQFEQHHIRKRYHAIVRGWLMDDAVLDYPLVEERDKIADKFAREDKAPQPAITQYRGLATVEMAVPTGRYPTTRYGLVELEPKTGRKHQLRRHLAHLRHPIIGDSKHGDLRQNRSAAEHFDCRRLMLHASQLELTHPFTGQPLIIQAGLDETWMQALTQFGWRGLLPDNERVEFTTASRQDESHQI
>NZ_CP053581.1|WP_002954403.1|3510955_3511285_-|YqcC-family-protein
MTTHDRVRQQLHALETLLREHRHWRLDAPQAHLFTSTQPFYMDTMEPLEWLQWVLIPRMHALLDNAQPLPEAFAVAPYYEMALAADHPQREAILAVLQDLDALFIRDKS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP053581_1	1.5\|3497771\|32\|NZ_CP053581\|PILER-CR	3497771-3497802	32	NZ_CP015255	Bacillus thuringiensis Bt18247 plasmid p15092, complete sequence	1084-1115	8	0.75

1. spacer 1.5|3497771|32|NZ_CP053581|PILER-CR matches to NZ_CP015255 (Bacillus thuringiensis Bt18247 plasmid p15092, complete sequence) position: , mismatch: 8, identity: 0.75

agctgagttctgctatttgccgcatgttgagc	CRISPR spacer
aaatgagttatgcaatttgccgcatgcagaaa	Protospacer
*. ****** *** ************. **.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

9303 : 60263

Streptococcus_phage(20.0%)

transposase,integrase

attL 4289:4305|attR 43085:43101

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4289:4305	attL	NA	NA	NA	NA
WP_171774060.1\|9303_10662_+\|transposase	IS1182 family transposase	A0A1X9I5T2	Streptococcus_phage	1.2e-83	39.7
WP_171774061.1\|11612_12275_-	aminomethyltransferase	NA	NA	NA	NA
WP_000912916.1\|14731_15046_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA
WP_001084149.1\|15038_16406_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA
WP_023186728.1\|16392_17235_+	class II fructose-bisphosphate aldolase	NA	NA	NA	NA
WP_023186727.1\|17293_17563_+	hypothetical protein	NA	NA	NA	NA
WP_171774062.1\|17586_18024_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA
WP_171774063.1\|18020_18605_+	AAA family ATPase	NA	NA	NA	NA
WP_171774064.1\|18660_18984_-	AzlD domain-containing protein	NA	NA	NA	NA
WP_076010054.1\|18983_19643_-	AzlC family ABC transporter permease	NA	NA	NA	NA
WP_079824610.1\|19725_20292_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_079804298.1\|20334_20649_-	L-rhamnose mutarotase	NA	NA	NA	NA
WP_171774065.1\|20645_21794_-	lactaldehyde reductase	NA	NA	NA	NA
WP_171774066.1\|21805_22630_-	rhamnulose-1-phosphate aldolase	NA	NA	NA	NA
WP_171774067.1\|22708_23968_-	L-rhamnose isomerase	NA	NA	NA	NA
WP_079807531.1\|23964_25434_-	rhamnulokinase	NA	NA	NA	NA
WP_171774068.1\|25757_26570_+	HTH-type transcriptional activator RhaS	NA	NA	NA	NA
WP_171774069.1\|27592_28597_-	L-rhamnose/proton symporter RhaT	NA	NA	NA	NA
WP_000122642.1\|28728_29349_+	superoxide dismutase [Mn]	Q56AR7	Bacillus_thuringiensis_phage	2.4e-63	58.4
WP_139387100.1\|29932_30334_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_001270787.1\|30485_31160_+	6-N-hydroxylaminopurine resistance protein	NA	NA	NA	NA
WP_000580433.1\|31193_32567_-	envelope stress sensor histidine kinase CpxA	W8CYF6	Bacillus_phage	1.1e-15	25.6
WP_001033731.1\|32563_33262_-	envelope stress response regulator transcription factor CpxR	Q6XM27	Feldmannia_irregularis_virus	5.3e-06	30.3
WP_001233471.1\|33412_33913_+	cell-envelope stress modulator CpxP	NA	NA	NA	NA
WP_079812501.1\|34396_34651_-\|integrase	integrase	S4TP66	Salmonella_phage	3.0e-20	82.3
WP_023994122.1\|35880_36306_+	CaiF/GrlA family transcriptional regulator	NA	NA	NA	NA
WP_171774070.1\|36302_37022_+	transcriptional regulator	NA	NA	NA	NA
WP_171774071.1\|37587_38738_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	8.9e-51	40.9
WP_171774072.1\|38782_39262_-	hypothetical protein	NA	NA	NA	NA
WP_171774073.1\|39676_39949_+	hypothetical protein	NA	NA	NA	NA
WP_167668519.1\|40169_40622_+	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_001664857.1\|40624_41428_+	peptidase C39	NA	NA	NA	NA
WP_171774074.1\|43060_43840_+	ATP-binding cassette domain-containing protein	W8CYL7	Bacillus_phage	8.7e-18	28.2
43085:43101	attR	NA	NA	NA	NA
WP_171774075.1\|44314_45514_-\|transposase	IS4 family transposase	S5FM71	Shigella_phage	7.1e-144	64.7
WP_001664859.1\|45872_46034_+	hypothetical protein	NA	NA	NA	NA
WP_000446778.1\|47461_47824_+	hypothetical protein	NA	NA	NA	NA
WP_000744305.1\|47952_48390_+	CaiF/GrlA family transcriptional regulator	NA	NA	NA	NA
WP_171774076.1\|48887_49367_+	hypothetical protein	NA	NA	NA	NA
WP_171774077.1\|49516_49732_+	hypothetical protein	NA	NA	NA	NA
WP_171774078.1\|49722_49914_+	hypothetical protein	NA	NA	NA	NA
WP_170884964.1\|50147_50294_+	hypothetical protein	NA	NA	NA	NA
WP_171774079.1\|50550_52509_+	autotransporter-associated beta strand repeat-containing protein	NA	NA	NA	NA
WP_171774080.1\|52511_54662_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_171774081.1\|54778_55531_+	EAL domain-containing protein	NA	NA	NA	NA
WP_171774082.1\|55837_56936_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	8.8e-48	42.2
WP_023186210.1\|57329_57620_+	hypothetical protein	NA	NA	NA	NA
WP_171774083.1\|58904_60263_+\|transposase	IS1182 family transposase	A0A1X9I5T2	Streptococcus_phage	1.2e-83	39.5

DBSCAN-SWA_2

1015896 : 1083232

Bacillus_phage(21.43%)

transposase,integrase,tRNA,protease

attL 1051144:1051177|attR 1054499:1054532

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000130293.1\|1015896_1017168_+\|protease	ATP-dependent protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	4.3e-131	56.5
WP_001043542.1\|1019914_1020187_+	DNA-binding protein HU-beta	A7KV42	Bacillus_phage	1.1e-20	58.4
WP_171774490.1\|1020477_1022349_+	peptidylprolyl isomerase	NA	NA	NA	NA
WP_171774491.1\|1022498_1022873_+	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA
WP_001194544.1\|1022978_1023377_+	YbgC/FadM family acyl-CoA thioesterase	NA	NA	NA	NA
WP_171774492.1\|1023484_1024180_-	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	1.0e-86	67.6
WP_171774493.1\|1024244_1025945_-	SgrR family transcriptional regulator	NA	NA	NA	NA
WP_023186862.1\|1026045_1026864_+	HMP-PP phosphatase	NA	NA	NA	NA
WP_171774494.1\|1027051_1027510_+\|transposase	IS200/IS605 family transposase	I4AZI8	Saccharomonospora_phage	2.9e-13	30.7
WP_171774495.1\|1027625_1028681_-	PLP-dependent cysteine synthase family protein	NA	NA	NA	NA
WP_000884593.1\|1028793_1029252_+	DNA-binding transcriptional regulator DecR	NA	NA	NA	NA
WP_171774496.1\|1029292_1031065_+	SmdA family multidrug ABC transporter permease/ATP-binding protein	W8CYL7	Bacillus_phage	1.2e-49	29.4
WP_171774497.1\|1031057_1032839_+	SmdB family multidrug efflux ABC transporter permease/ATP-binding protein	W8CYL7	Bacillus_phage	2.7e-38	26.9
WP_171774498.1\|1033041_1033380_+	P-II family nitrogen regulator	NA	NA	NA	NA
WP_171774499.1\|1033411_1034698_+	ammonium transporter AmtB	NA	NA	NA	NA
WP_000084181.1\|1034797_1035658_-	acyl-CoA thioesterase II	NA	NA	NA	NA
WP_000779802.1\|1035872_1036442_+	YbaY family lipoprotein	NA	NA	NA	NA
WP_000961285.1\|1036474_1036864_-	MGMT family protein	NA	NA	NA	NA
WP_171774500.1\|1037094_1038645_-	EAL domain-containing protein	NA	NA	NA	NA
WP_023182818.1\|1038868_1039129_+	type B 50S ribosomal protein L31	NA	NA	NA	NA
WP_001197749.1\|1039134_1039275_+	50S ribosomal protein L36	NA	NA	NA	NA
WP_079804469.1\|1039328_1039799_-	hypothetical protein	NA	NA	NA	NA
WP_171774501.1\|1039915_1040467_-	maltose O-acetyltransferase	NA	NA	NA	NA
WP_001280991.1\|1040646_1040865_-	hemolysin expression modulator Hha	NA	NA	NA	NA
WP_079804471.1\|1040892_1041267_-	Hha toxicity modulator TomB	NA	NA	NA	NA
WP_171774502.1\|1041764_1044914_-	efflux RND transporter permease AcrB	NA	NA	NA	NA
WP_171774503.1\|1044936_1046130_-	multidrug efflux RND transporter periplasmic adaptor subunit AcrA	NA	NA	NA	NA
WP_079968419.1\|1046271_1046925_+	multidrug efflux transporter transcriptional repressor AcrR	NA	NA	NA	NA
WP_171774504.1\|1047043_1050406_+	mechanosensitive channel MscK	NA	NA	NA	NA
1051144:1051177	attL	NA	NA	NA	NA
WP_171774039.1\|1051291_1052551_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_171774040.1\|1052544_1053459_+\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	4.3e-08	24.9
WP_171774505.1\|1053455_1054457_+\|integrase	tyrosine-type recombinase/integrase	A0A2K9VF00	Mycobacterium_phage	3.7e-05	25.9
WP_000051161.1\|1056476_1056644_-	pleiotropic regulatory protein RsmS	NA	NA	NA	NA
1054499:1054532	attR	NA	NA	NA	NA
WP_001519637.1\|1056657_1057185_-	primosomal replication protein N''	NA	NA	NA	NA
WP_171774506.1\|1057253_1057631_+	DUF454 family protein	NA	NA	NA	NA
WP_171774507.1\|1057783_1058335_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	2.9e-28	45.2
WP_171774508.1\|1058448_1060377_+	DNA polymerase III subunit gamma/tau	A0A1L2BWV7	Bacteriophage	2.3e-43	41.5
WP_000467098.1\|1060422_1060752_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
WP_171774509.1\|1060751_1061357_+	recombination protein RecR	NA	NA	NA	NA
WP_171774510.1\|1061467_1063342_+	molecular chaperone HtpG	A0A1B1ISV4	uncultured_Mediterranean_phage	2.0e-116	37.1
WP_001220237.1\|1063699_1064344_+	adenylate kinase	NA	NA	NA	NA
WP_001250078.1\|1064528_1065491_+	ferrochelatase	NA	NA	NA	NA
WP_171774511.1\|1065487_1066459_-	acetyl esterase	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	1.1e-14	27.4
WP_000671592.1\|1066611_1067916_+	inosine/guanosine kinase	NA	NA	NA	NA
WP_171774512.1\|1068038_1069715_-	Kef family K(+) transporter	NA	NA	NA	NA
WP_171774513.1\|1069929_1071150_-	MFS transporter	NA	NA	NA	NA
WP_171774514.1\|1071322_1072975_+	bifunctional UDP-sugar hydrolase/5'-nucleotidase	NA	NA	NA	NA
WP_000186618.1\|1073091_1073571_-\|tRNA	Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK	NA	NA	NA	NA
WP_171774515.1\|1073772_1074567_-	TraB/GumN family protein	NA	NA	NA	NA
WP_171774516.1\|1074705_1077207_-	copper-exporting P-type ATPase CopA	A0A218MNH6	uncultured_virus	2.8e-110	36.9
WP_079824314.1\|1077316_1077733_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA
WP_079804494.1\|1077733_1078186_-	NfeD family protein	NA	NA	NA	NA
WP_000906148.1\|1078182_1079100_-	SPFH/Band 7/PHB domain protein	NA	NA	NA	NA
WP_171774517.1\|1079246_1079924_+	iron ABC transporter ATP-binding protein FetA	G3M9Y6	Bacillus_virus	6.0e-23	33.3
WP_001002130.1\|1079910_1080690_+	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA
WP_000116060.1\|1080778_1081633_-	chaperedoxin	NA	NA	NA	NA
WP_001172801.1\|1081692_1082463_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_171774518.1\|1082617_1083232_-\|protease	multifunctional acyl-CoA thioesterase I/protease I/lysophospholipase L1	NA	NA	NA	NA

DBSCAN-SWA_3

1253580 : 1293473

Shigella_phage(65.79%)

head,protease,transposase,capsid,plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_171774592.1\|1253580_1255002_+	deoxyribodipyrimidine photo-lyase	A0A1V0SGL1	Hokovirus	3.4e-60	32.1
WP_171774593.1\|1256702_1257275_-	hypothetical protein	A0A2D1GNR8	Pseudomonas_phage	2.5e-38	55.3
WP_171774594.1\|1257439_1257688_+	helix-turn-helix domain-containing protein	A0A2D1GNH1	Pseudomonas_phage	2.3e-28	72.0
WP_171774595.1\|1257689_1259678_+\|transposase	Mu transposase C-terminal domain-containing protein	C9DGL1	Escherichia_phage	6.5e-219	57.3
WP_171774596.1\|1259750_1260674_+	AAA family ATPase	A0A0C4UQR3	Shigella_phage	1.1e-67	46.8
WP_171774597.1\|1260676_1260919_+	hypothetical protein	NA	NA	NA	NA
WP_171774598.1\|1260924_1261149_+	hypothetical protein	NA	NA	NA	NA
WP_171774599.1\|1261249_1261465_+	hypothetical protein	NA	NA	NA	NA
WP_171774600.1\|1261473_1262112_+	DUF3164 family protein	A0A2I7S9B0	Vibrio_phage	9.2e-58	55.8
WP_171774601.1\|1262201_1262750_+	DUF5420 family protein	NA	NA	NA	NA
WP_171774602.1\|1262753_1263278_+	hypothetical protein	A0A0C4UQU2	Shigella_phage	9.9e-58	63.9
WP_171774603.1\|1263277_1263796_+	hypothetical protein	C9DGM0	Escherichia_phage	1.0e-46	54.9
WP_079978978.1\|1263792_1264344_+	AsnC family protein	NA	NA	NA	NA
WP_171774604.1\|1264340_1264673_+	hypothetical protein	NA	NA	NA	NA
WP_171774605.1\|1264665_1264809_+	hypothetical protein	A0A0C4UR26	Shigella_phage	4.2e-11	92.7
WP_171774606.1\|1264810_1265131_+	hypothetical protein	A0A0C4UQR5	Shigella_phage	1.8e-06	37.8
WP_171774607.1\|1265127_1265415_+	hypothetical protein	NA	NA	NA	NA
WP_171774608.1\|1265418_1265937_+	DUF1018 domain-containing protein	A0A0C4UQU3	Shigella_phage	1.6e-23	43.7
WP_171774609.1\|1266044_1266248_+	hypothetical protein	NA	NA	NA	NA
WP_171774610.1\|1266402_1266840_+	transcriptional regulator	A0A0C4UQZ9	Shigella_phage	6.8e-20	39.4
WP_080077538.1\|1266939_1267440_+	lysozyme	I7HDJ5	Xanthomonas_virus	3.3e-26	45.0
WP_171774611.1\|1267504_1267885_+	DUF2570 family protein	NA	NA	NA	NA
WP_171774612.1\|1267901_1268087_+	hypothetical protein	Q8SBD8	Shigella_phage	7.6e-05	52.5
WP_171774613.1\|1268100_1268397_+	hypothetical protein	NA	NA	NA	NA
WP_171774614.1\|1268389_1268617_+	TraR/DksA family transcriptional regulator	NA	NA	NA	NA
WP_079952007.1\|1268597_1268906_+	DUF2730 family protein	M4M9P7	Vibrio_phage	4.1e-11	37.8
WP_171774615.1\|1268902_1269193_+	ArsR family transcriptional regulator	A0A0C4UR00	Shigella_phage	3.0e-24	60.0
WP_080187506.1\|1269195_1269777_+	DUF3486 family protein	A0A0C4UQU5	Shigella_phage	1.3e-53	61.9
WP_171774616.1\|1269776_1271474_+	hypothetical protein	A0A0C4UR29	Shigella_phage	3.2e-222	68.0
WP_171774617.1\|1271473_1273042_+	DUF935 domain-containing protein	A0A0C4UQR8	Shigella_phage	4.0e-171	58.1
WP_171774618.1\|1272989_1274357_+\|capsid	minor capsid protein	A0A0C4UQY9	Shigella_phage	9.2e-156	59.3
WP_171774619.1\|1274479_1274956_+	phage virion morphogenesis protein	A0A0C4UR01	Shigella_phage	3.1e-42	56.2
WP_171774620.1\|1275037_1276273_+\|protease	protease	A0A0C4UQU6	Shigella_phage	1.9e-83	50.4
WP_171774621.1\|1276269_1277241_+\|head	Mu-like prophage major head subunit gpT family protein	A0A0C4UQR9	Shigella_phage	1.1e-94	54.5
WP_171774622.1\|1277300_1277807_+	hypothetical protein	NA	NA	NA	NA
WP_171774623.1\|1277806_1278220_+	DUF1320 family protein	A0A0C4UR02	Shigella_phage	2.9e-28	47.1
WP_171774624.1\|1278216_1278753_+	DUF1834 family protein	A0A0C4UQU7	Shigella_phage	3.5e-42	47.7
WP_171776080.1\|1278852_1279071_+	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_171774625.1\|1279067_1280570_+\|tail	phage tail sheath subtilisin-like domain-containing protein	A0A0C4UQS0	Shigella_phage	1.9e-138	52.7
WP_171774626.1\|1280578_1280944_+\|tail	phage tail tube protein	NA	NA	NA	NA
WP_171774627.1\|1280953_1281439_+	hypothetical protein	A0A0C4UR03	Shigella_phage	9.2e-26	50.0
WP_171774628.1\|1281578_1283699_+	tape measure protein	A0A0C4UQU8	Shigella_phage	6.8e-57	31.6
WP_171774629.1\|1283682_1285065_+	DNA circularization protein	A0A0C4UR32	Shigella_phage	3.2e-55	33.1
WP_171774630.1\|1285057_1286182_+\|tail	phage tail protein	A0A0C4UQS1	Shigella_phage	7.2e-90	46.5
WP_171774631.1\|1286174_1286804_+\|plate	phage baseplate assembly protein V	A0A0C4UQZ3	Shigella_phage	1.5e-44	46.6
WP_171774632.1\|1286796_1287234_+	phage GP46 family protein	A0A0C4UR04	Shigella_phage	3.5e-40	54.5
WP_171774633.1\|1287234_1288317_+\|plate	baseplate J/gp47 family protein	A0A0C4UQU9	Shigella_phage	2.2e-96	52.1
WP_171774634.1\|1288307_1288868_+	YmfQ family protein	C9DGQ7	Escherichia_phage	1.6e-45	48.9
WP_171774635.1\|1288877_1290116_+\|tail	tail fiber protein	A0A0M3ULH6	Salmonella_phage	1.2e-37	68.4
WP_171774636.1\|1290115_1290865_+	DUF4376 domain-containing protein	A0A0M4RTP2	Salmonella_phage	7.8e-48	75.2
WP_171774637.1\|1290851_1292357_+\|tail	prophage tail fiber N-terminal domain-containing protein	NA	NA	NA	NA
WP_171774638.1\|1292371_1292968_+	DUF4376 domain-containing protein	Q9MCI9	Enterobacteria_phage	1.8e-31	54.3
WP_171774639.1\|1293077_1293473_+	DUF1353 domain-containing protein	I1TQ41	Pseudomonas_phage	3.0e-14	38.2

DBSCAN-SWA_4

1724383 : 1773555

Enterobacterial_phage(15.38%)

bacteriocin,protease,transposase,holin,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_171774818.1\|1724383_1725742_+\|transposase	IS1182 family transposase	A0A1X9I5T2	Streptococcus_phage	1.4e-84	39.9
WP_171774819.1\|1725969_1726935_-	L,D-transpeptidase family protein	NA	NA	NA	NA
WP_171774820.1\|1727082_1730529_-	transcription-repair coupling factor	NA	NA	NA	NA
WP_171774821.1\|1730866_1732066_+	lipoprotein-releasing ABC transporter permease subunit LolC	NA	NA	NA	NA
WP_171774822.1\|1732058_1732760_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	G9BWD6	Planktothrix_phage	1.2e-34	40.3
WP_002950930.1\|1732759_1734004_+	lipoprotein-releasing ABC transporter permease subunit LolE	NA	NA	NA	NA
WP_000291340.1\|1734032_1734944_+	N-acetylglucosamine kinase	NA	NA	NA	NA
WP_171774823.1\|1734962_1735784_+	NAD-dependent protein deacylase	A0A2I7S9Y2	Vibrio_phage	3.6e-22	34.0
WP_171774824.1\|1735869_1736916_-	spermidine/putrescine ABC transporter substrate-binding protein PotD	NA	NA	NA	NA
WP_000580299.1\|1736940_1737720_-	spermidine/putrescine ABC transporter permease PotC	NA	NA	NA	NA
WP_171774825.1\|1738035_1739046_-	SPI-2 type III secretion system effector SifA	NA	NA	NA	NA
WP_000799391.1\|1739374_1740238_-	spermidine/putrescine ABC transporter permease PotB	Q6GZ02	Mycoplasma_phage	2.0e-10	26.2
WP_171774826.1\|1740221_1741358_-	spermidine/putrescine ABC transporter ATP-binding protein PotA	G3M9Y6	Bacillus_virus	2.1e-28	34.0
WP_171774827.1\|1741608_1742835_+	peptidase T	NA	NA	NA	NA
WP_171774828.1\|1742940_1744062_-	cupin domain-containing protein	NA	NA	NA	NA
WP_171774829.1\|1744142_1745606_-	two-component system sensor histidine kinase PhoQ	NA	NA	NA	NA
WP_001537766.1\|1745605_1746277_-	two-component system response regulator PhoP	NA	NA	NA	NA
WP_171774830.1\|1746403_1747774_-	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	8.5e-109	45.3
WP_001519653.1\|1747777_1748419_-	high frequency lysogenization protein HflD	NA	NA	NA	NA
WP_171774831.1\|1748505_1749612_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_076735712.1\|1749665_1750127_-	NUDIX hydrolase	NA	NA	NA	NA
WP_000825956.1\|1750138_1750468_-	DUF1311 domain-containing protein	NA	NA	NA	NA
WP_171774832.1\|1750464_1751130_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_000444466.1\|1751301_1752552_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	6.7e-20	92.6
WP_171774833.1\|1752932_1753769_+\|bacteriocin	lipid II-degrading bacteriocin	NA	NA	NA	NA
WP_000444203.1\|1753805_1754147_-	hypothetical protein	NA	NA	NA	NA
WP_001294873.1\|1754392_1754782_+\|holin	phage holin family protein	K7PHB9	Enterobacterial_phage	4.8e-41	72.5
WP_171774834.1\|1754768_1755050_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	1.1e-34	77.4
WP_171774835.1\|1755049_1755664_+	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	5.1e-106	91.7
WP_000636436.1\|1755660_1756203_+	DUF2514 family protein	NA	NA	NA	NA
WP_171774836.1\|1758946_1760071_+	type III secretion system effector SopF	NA	NA	NA	NA
WP_171774071.1\|1760686_1761836_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	8.9e-51	40.9
WP_171776087.1\|1761868_1764079_+	type III secretion system effector E3 ubiquitin transferase SspH2	Q9MBL9	Phage_Gifsy-2	1.1e-46	74.6
WP_171774837.1\|1765873_1768138_+	type III secretion system effector E3 ubiquitin transferase SspH2	Q9MBL9	Phage_Gifsy-2	5.6e-57	77.1
WP_079803529.1\|1772607_1773555_-\|protease	omptin family outer membrane protease	NA	NA	NA	NA

DBSCAN-SWA_5

2096098 : 2182501

Shigella_phage(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_171774249.1\|2096098_2097249_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	8.9e-51	40.9
WP_171774975.1\|2097309_2097627_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	1.5e-08	60.0
WP_171776099.1\|2098868_2099255_+	hypothetical protein	NA	NA	NA	NA
WP_171774976.1\|2099769_2100306_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_171774977.1\|2100384_2102349_+	U32 family peptidase	Q6DW11	Phage_TP	2.3e-22	27.3
WP_000494238.1\|2102349_2102580_-	DUF2554 family protein	NA	NA	NA	NA
WP_001250587.1\|2102738_2102864_-	DUF2474 domain-containing protein	NA	NA	NA	NA
WP_171774978.1\|2102863_2103874_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_171774979.1\|2105545_2106523_-	SPI-2 type III secretion system effector SifB	NA	NA	NA	NA
WP_000714394.1\|2106957_2107335_+	hypothetical protein	NA	NA	NA	NA
WP_024134760.1\|2107840_2108602_+	M15 family metallopeptidase	NA	NA	NA	NA
WP_000760683.1\|2108745_2110155_+	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_171774980.1\|2110305_2111730_+	aminobutyraldehyde dehydrogenase	NA	NA	NA	NA
WP_079803968.1\|2111831_2111927_-	stress response membrane protein YncL	NA	NA	NA	NA
WP_139386339.1\|2112112_2112286_+	GhoT/OrtT family toxin	NA	NA	NA	NA
WP_171774981.1\|2112328_2114473_-	virulence effector SrfC	NA	NA	NA	NA
WP_171774982.1\|2114469_2117451_-	virulence factor SrfB	NA	NA	NA	NA
WP_171774983.1\|2117455_2118781_-	ssrAB-activated protein	NA	NA	NA	NA
WP_000018720.1\|2119004_2119238_+	DUF2526 family protein	NA	NA	NA	NA
WP_000155374.1\|2119692_2120208_-	L-methionine sulfoximine/L-methionine sulfone acetyltransferase	NA	NA	NA	NA
WP_171774984.1\|2120397_2121468_+	NADP-dependent oxidoreductase	NA	NA	NA	NA
WP_171774985.1\|2121803_2122469_+	colanic acid/biofilm transcriptional regulator McbR	NA	NA	NA	NA
WP_171774986.1\|2122515_2124636_-	TonB-dependent receptor	A0A1B0VCF0	Salmonella_phage	1.5e-133	65.3
WP_171774987.1\|2124900_2125962_+	YncE family protein	NA	NA	NA	NA
WP_023187514.1\|2126106_2126328_+	YgdI/YgdR family lipoprotein	NA	NA	NA	NA
WP_171774988.1\|2126404_2127898_-	L-asparagine permease	NA	NA	NA	NA
WP_171774989.1\|2128305_2129127_+	effector protein steA	NA	NA	NA	NA
WP_171774990.1\|2129550_2130396_+	N-hydroxyarylamine O-acetyltransferase	NA	NA	NA	NA
WP_171774991.1\|2130486_2131065_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_023197455.1\|2131182_2132670_+	methyl viologen efflux MFS transporter SmvA	NA	NA	NA	NA
WP_077905442.1\|2132694_2133075_-	GFA family protein	NA	NA	NA	NA
WP_000769035.1\|2133218_2134307_-	porin OmpD	Q1MVN1	Enterobacteria_phage	4.0e-154	75.1
WP_000203794.1\|2134829_2135711_-	aromatic amino acid efflux DMT transporter YddG	NA	NA	NA	NA
WP_171774992.1\|2136001_2139049_+	formate dehydrogenase-N subunit alpha	NA	NA	NA	NA
WP_000061599.1\|2139062_2139947_+	formate dehydrogenase subunit beta	NA	NA	NA	NA
WP_171774993.1\|2139939_2140596_+	formate dehydrogenase-N subunit gamma	NA	NA	NA	NA
WP_171774994.1\|2141975_2143673_-	NAD-dependent malic enzyme	NA	NA	NA	NA
WP_000841559.1\|2143849_2143993_-	stationary-phase-induced ribosome-associated protein	NA	NA	NA	NA
WP_000495700.1\|2144087_2144303_-	biofilm-dependent modulation protein	NA	NA	NA	NA
WP_079824282.1\|2144819_2145251_+	OsmC family protein	NA	NA	NA	NA
WP_001032161.1\|2145600_2145930_+	acid-activated periplasmic chaperone HdeB	NA	NA	NA	NA
WP_000698598.1\|2146072_2146858_+	OBAP family protein	NA	NA	NA	NA
WP_171774995.1\|2146985_2148770_+	malto-oligosyltrehalose trehalohydrolase	NA	NA	NA	NA
WP_171774996.1\|2148766_2151295_+	malto-oligosyltrehalose synthase	NA	NA	NA	NA
WP_171774997.1\|2151349_2153425_+	glycogen debranching protein GlgX	NA	NA	NA	NA
WP_171774998.1\|2153538_2154741_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
WP_171774999.1\|2156099_2156705_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_102025837.1\|2157042_2158142_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.5e-47	42.2
WP_171775000.1\|2158086_2158917_-	ATP-binding protein	U5N3V8	Enterobacteria_phage	1.3e-24	31.2
WP_171775001.1\|2158931_2160473_-\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	7.5e-130	46.3
WP_171775002.1\|2161787_2163029_-	RHS repeat-associated core domain-containing protein	B6SD27	Bacteriophage	6.2e-26	44.6
WP_171775003.1\|2163080_2166821_-	RHS repeat protein	A0A1W5K0N1	Bacteriophage	6.2e-146	30.9
WP_171775004.1\|2172799_2173096_+	hypothetical protein	NA	NA	NA	NA
WP_171774249.1\|2173449_2174600_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	8.9e-51	40.9
WP_171775005.1\|2177913_2180850_-	RHS repeat protein	NA	NA	NA	NA
WP_171775006.1\|2181333_2182501_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	4.1e-144	90.4

DBSCAN-SWA_6

2611827 : 2666079

Escherichia_phage(35.71%)

tail,transposase,integrase,plate

attL 2621593:2621610|attR 2646496:2646513

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_171775172.1\|2611827_2612868_-\|transposase	IS481 family transposase	A0A077SLK2	Escherichia_phage	2.4e-180	86.4
WP_171776104.1\|2613311_2613851_+	DUF4102 domain-containing protein	Q7M297	Enterobacteria_phage	1.4e-22	37.3
WP_171775173.1\|2614246_2614513_+	hypothetical protein	NA	NA	NA	NA
WP_000661532.1\|2614706_2614913_-	hypothetical protein	NA	NA	NA	NA
WP_171775174.1\|2615413_2616880_+	C69 family dipeptidase	NA	NA	NA	NA
WP_171775175.1\|2617786_2619241_+	AMP nucleosidase	NA	NA	NA	NA
2621593:2621610	attL	NA	NA	NA	NA
WP_171775176.1\|2621889_2622408_+	hypothetical protein	NA	NA	NA	NA
WP_171775177.1\|2622412_2623300_+	DUF4868 domain-containing protein	NA	NA	NA	NA
WP_171775178.1\|2623557_2624919_-	DNA double-strand break repair nuclease NurA	NA	NA	NA	NA
WP_171775179.1\|2624921_2627009_-	ATP-binding protein	NA	NA	NA	NA
WP_171775180.1\|2627057_2628029_-	DNA adenine methylase	NA	NA	NA	NA
WP_171775181.1\|2628237_2629119_-\|integrase	integrase domain-containing protein	NA	NA	NA	NA
WP_171775182.1\|2629920_2630124_-	hypothetical protein	NA	NA	NA	NA
WP_171775183.1\|2630136_2630826_-	hypothetical protein	NA	NA	NA	NA
WP_077918418.1\|2630917_2631031_-	ash family protein	NA	NA	NA	NA
WP_171775184.1\|2631341_2632277_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_171775185.1\|2632393_2633365_+	transporter substrate-binding domain-containing protein	A0A1B1IT51	uncultured_Mediterranean_phage	9.5e-38	29.7
WP_125744385.1\|2633394_2634285_+	hypothetical protein	NA	NA	NA	NA
WP_171776105.1\|2634341_2635076_+	2OG-Fe dioxygenase family protein	NA	NA	NA	NA
WP_171775186.1\|2635075_2635798_+	SDR family oxidoreductase	A0A0M4JSW6	Mollivirus	1.4e-06	29.6
WP_171775187.1\|2635844_2637101_+	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_125744393.1\|2637121_2638363_+	MFS transporter	NA	NA	NA	NA
WP_171775188.1\|2638465_2639728_-\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	4.5e-72	40.0
WP_079805423.1\|2640128_2641580_+	EmmdR/YeeO family multidrug/toxin efflux MATE transporter	NA	NA	NA	NA
WP_171775189.1\|2641955_2643218_+\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	4.5e-72	39.7
WP_023186591.1\|2643827_2643962_+	ash family protein	NA	NA	NA	NA
WP_171774052.1\|2644013_2644181_+	hypothetical protein	NA	NA	NA	NA
WP_171775190.1\|2650372_2651302_-	L,D-transpeptidase	NA	NA	NA	NA
2646496:2646513	attR	NA	NA	NA	NA
WP_000450405.1\|2652626_2652962_-	DUF496 family protein	NA	NA	NA	NA
WP_171775191.1\|2653205_2654264_-	FUSC family protein	NA	NA	NA	NA
WP_079804755.1\|2654382_2654850_-	DNA gyrase inhibitor SbmC	NA	NA	NA	NA
WP_171775192.1\|2654995_2656168_-	serine-type D-Ala-D-Ala carboxypeptidase DacD	B6DZZ7	Stx2-converting_phage	5.8e-199	87.4
WP_002953912.1\|2656291_2657056_-	thiosulfate reductase cytochrome B subunit	NA	NA	NA	NA
WP_171775193.1\|2657052_2657631_-	thiosulfate reductase electron transport protein PhsB	A0A077SL61	Escherichia_phage	8.7e-23	37.6
WP_171775194.1\|2657645_2659922_-	thiosulfate reductase PhsA	NA	NA	NA	NA
WP_171775195.1\|2660523_2660790_+	hypothetical protein	A0A0M3ULK3	Salmonella_phage	2.0e-35	85.2
WP_024138909.1\|2660805_2660997_-	DUF2767 family protein	A0A0M4R5C3	Salmonella_phage	5.8e-16	97.7
WP_171776106.1\|2661105_2661540_-	hypothetical protein	NA	NA	NA	NA
WP_171775196.1\|2661895_2662489_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	3.2e-97	91.6
WP_171775197.1\|2662488_2664246_-\|tail	tail fiber protein	A0A0U2SAV1	Escherichia_phage	1.1e-89	69.1
WP_000729406.1\|2664242_2664869_-	hypothetical protein	A0A0U2RK03	Escherichia_phage	3.3e-92	71.6
WP_171775198.1\|2664852_2666079_-\|plate	baseplate J/gp47 family protein	A0A0U2RJZ0	Escherichia_phage	4.9e-148	63.9

DBSCAN-SWA_7

2676092 : 2705260

Salmonella_phage(44.12%)

terminase,holin,integrase

attL 2678710:2678726|attR 2712035:2712051

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001110973.1\|2676092_2677124_-	DUF2184 domain-containing protein	A0A0U2QQI2	Escherichia_phage	1.1e-73	45.8
WP_171775202.1\|2677141_2678014_-	hypothetical protein	NA	NA	NA	NA
WP_171775203.1\|2678034_2679609_-	NUDIX domain-containing protein	Q6UJ14	Burkholderia_virus	1.7e-20	48.6
2678710:2678726	attL	NA	NA	NA	NA
WP_070794085.1\|2679609_2680485_-	hypothetical protein	A0A0U2I1R8	Escherichia_phage	1.8e-56	45.8
WP_015406013.1\|2680456_2681887_-	DUF1073 domain-containing protein	A0A0U2S5X9	Escherichia_phage	2.0e-92	38.1
WP_171775204.1\|2681886_2683158_-	hypothetical protein	H9YPE5	environmental_Halophage	8.6e-15	30.9
WP_171775205.1\|2683147_2684119_-\|terminase	terminase small subunit	I6NV32	Burkholderia_virus	1.7e-23	32.8
WP_058108913.1\|2684215_2684431_-	hypothetical protein	NA	NA	NA	NA
WP_171775206.1\|2684546_2684960_-	hypothetical protein	NA	NA	NA	NA
WP_171775207.1\|2684949_2685501_-	DUF2514 domain-containing protein	NA	NA	NA	NA
WP_171775208.1\|2685497_2686124_-	glycoside hydrolase family 19 protein	Q858F0	Salmonella_phage	1.1e-92	80.2
WP_085429533.1\|2686126_2686468_-\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	1.3e-45	80.4
WP_171775209.1\|2686743_2687430_+	PipA/GogA/GtgA family type III secretion system effector	Q9MBM0	Phage_Gifsy-2	3.3e-130	97.8
WP_171775210.1\|2687558_2688131_-	ORF6N domain-containing protein	A0A2R2Z302	Escherichia_phage	1.2e-45	77.7
WP_171775211.1\|2688392_2689070_-	antiterminator	I6PDF8	Cronobacter_phage	5.2e-59	51.3
WP_000801757.1\|2689066_2689207_-	YlcG family protein	A0A0M5M7B2	Salmonella_phage	7.2e-08	78.9
WP_171775212.1\|2689203_2689815_-	recombination protein NinG	A0A0M4RU10	Salmonella_phage	4.6e-91	98.0
WP_171775213.1\|2690023_2690620_-	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	2.0e-54	50.8
WP_014343878.1\|2690654_2690903_-	hypothetical protein	A0A0U2C0C8	Salmonella_phage	1.6e-42	100.0
WP_171775214.1\|2691019_2691253_-	DinI family protein	H6WRY5	Salmonella_phage	8.0e-36	97.4
WP_171775215.1\|2692566_2693280_-	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	3.3e-48	54.2
WP_171775216.1\|2693283_2693634_-	hypothetical protein	U5PWL3	Acinetobacter_phage	1.7e-05	33.7
WP_171775217.1\|2693614_2693971_-	hypothetical protein	H6WRY0	Salmonella_phage	1.2e-43	82.9
WP_171775218.1\|2693967_2694483_-	DUF262 domain-containing protein	A0A2H4FWH2	Salmonella_phage	4.5e-95	97.1
WP_171775219.1\|2694479_2694833_-	hypothetical protein	Q858D1	Salmonella_phage	3.2e-12	62.8
WP_171775220.1\|2694846_2695542_-	phage replication protein	G8C7U6	Escherichia_phage	2.9e-57	46.7
WP_171775221.1\|2695538_2696375_-	replication protein	K7PGT1	Enterobacteria_phage	6.4e-51	51.5
WP_074421601.1\|2696466_2696841_-	hypothetical protein	S4TTD7	Salmonella_phage	3.3e-63	98.4
WP_000992434.1\|2696806_2697043_-	helix-turn-helix domain-containing protein	A0A0M4QX15	Salmonella_phage	9.0e-27	73.1
WP_001230958.1\|2697147_2697543_+	helix-turn-helix domain-containing protein	K7PM35	Enterobacteria_phage	2.7e-47	72.5
WP_046093611.1\|2697693_2698251_+	hypothetical protein	NA	NA	NA	NA
WP_046093612.1\|2698247_2699000_+	DUF1828 domain-containing protein	NA	NA	NA	NA
WP_171775222.1\|2699024_2699231_-	hypothetical protein	K7P7I0	Enterobacteria_phage	3.7e-16	66.2
WP_001528648.1\|2699482_2699725_+	cell division protein FtsZ	G8C7T2	Escherichia_phage	1.7e-12	48.4
WP_000995352.1\|2699810_2700107_+	host-nuclease inhibitor protein Gam	A0A0M5M5Z9	Salmonella_phage	1.1e-48	100.0
WP_024153581.1\|2700112_2700616_+	hypothetical protein	A0A0F7L7F5	uncultured_marine_virus	8.4e-14	31.5
WP_171775223.1\|2700612_2701236_+	YqaJ viral recombinase family protein	S0A2A9	Cellulophaga_phage	8.7e-45	48.1
WP_171775224.1\|2701232_2703485_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1B0V7P0	Salmonella_phage	3.6e-205	48.9
WP_171776108.1\|2703490_2703730_+	DUF4060 family protein	S4TR31	Salmonella_phage	2.2e-36	96.2
WP_171775225.1\|2704078_2705260_-\|integrase	site-specific integrase	A0A0M4QX09	Salmonella_phage	6.4e-214	91.1
2712035:2712051	attR	NA	NA	NA	NA

DBSCAN-SWA_8

2802445 : 2810999

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000195344.1\|2802445_2804479_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	4.7e-55	27.6
WP_171775271.1\|2804719_2805178_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	7.6e-54	73.2
WP_079823559.1\|2805302_2805773_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.2e-70	85.3
WP_079804826.1\|2805824_2806544_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_079804830.1\|2806540_2808226_-	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	1.2e-274	90.2
WP_171775272.1\|2808448_2809189_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	3.9e-100	87.6
WP_001234242.1\|2809248_2809356_+	protein YohO	NA	NA	NA	NA
WP_171775273.1\|2809336_2810068_-	ABC transporter permease	NA	NA	NA	NA
WP_171775274.1\|2810051_2810999_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	6.4e-23	30.3

DBSCAN-SWA_9

3052428 : 3168656

114

Enterobacteria_phage(50.0%)

head,protease,portal,transposase,holin,capsid,plate,lysis,tail,terminase,integrase,tRNA

attL 3089980:3089997|attR 3147818:3147835

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_171775369.1\|3052428_3053367_-\|protease	omptin family outer membrane protease	NA	NA	NA	NA
WP_171775370.1\|3053958_3054201_-	YfdY family protein	NA	NA	NA	NA
WP_000484431.1\|3054722_3055643_+	kdo(2)-lipid IV(A) palmitoleoyltransferase	A0A1W6JP29	Morganella_phage	1.1e-75	53.5
WP_010723117.1\|3056045_3056117_+	membrane protein YpdK	NA	NA	NA	NA
WP_171774494.1\|3056238_3056697_-\|transposase	IS200/IS605 family transposase	I4AZI8	Saccharomonospora_phage	2.9e-13	30.7
WP_000763118.1\|3056877_3058116_-	alanine transaminase	NA	NA	NA	NA
WP_171775371.1\|3058836_3059802_-	glucokinase	NA	NA	NA	NA
WP_171775372.1\|3060006_3061242_+	ion channel protein	NA	NA	NA	NA
WP_171775373.1\|3063093_3064092_+	L-glyceraldehyde 3-phosphate reductase	NA	NA	NA	NA
WP_000490089.1\|3064205_3064532_+	DUF2502 domain-containing protein	NA	NA	NA	NA
WP_171776115.1\|3064592_3065834_-	Nramp family divalent metal transporter	NA	NA	NA	NA
WP_079805313.1\|3066174_3067377_+	nucleoside permease NupC	NA	NA	NA	NA
WP_079805311.1\|3070235_3070598_+	putative DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_079805310.1\|3070599_3070992_+	putative DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_171775374.1\|3071045_3072461_-\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
WP_001109835.1\|3073305_3074232_-	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	1.4e-09	25.7
WP_002954172.1\|3074321_3075320_+	bile acid:sodium symporter	NA	NA	NA	NA
WP_002954173.1\|3075316_3075535_-	DUF3820 family protein	NA	NA	NA	NA
WP_171775375.1\|3075536_3077552_-	NAD-dependent DNA ligase LigA	A0A0K2QQN8	Ralstonia_phage	4.2e-149	43.3
WP_171775376.1\|3077623_3078607_-	cell division protein ZipA	NA	NA	NA	NA
WP_023186751.1\|3078836_3079598_+	sulfate transporter CysZ	NA	NA	NA	NA
WP_000036904.1\|3079761_3080733_+	cysteine synthase A	A0A1X9I5F1	Streptococcus_phage	7.4e-75	51.0
WP_000487600.1\|3081116_3081374_+	phosphocarrier protein Hpr	NA	NA	NA	NA
WP_171775377.1\|3081422_3083150_+	phosphoenolpyruvate-protein phosphotransferase PtsI	A0A1V0SGR7	Hokovirus	7.4e-17	31.1
WP_000522253.1\|3083190_3083700_+	PTS glucose transporter subunit IIA	NA	NA	NA	NA
WP_000844541.1\|3083862_3084102_-	hypothetical protein	NA	NA	NA	NA
WP_171775378.1\|3084098_3084965_-	pyridoxine/pyridoxal/pyridoxamine kinase	NA	NA	NA	NA
WP_171775379.1\|3085047_3086340_+	transcriptional regulator PtsJ	NA	NA	NA	NA
WP_171775380.1\|3086354_3087071_+	type 1 glutamine amidotransferase	NA	NA	NA	NA
WP_171775381.1\|3087154_3088066_-	cysteine synthase CysM	A0A1X9I5F1	Streptococcus_phage	6.5e-57	41.8
WP_171775382.1\|3088186_3089284_-	sulfate/thiosulfate ABC transporter ATP-binding protein CysA	G3M9Y6	Bacillus_virus	1.8e-24	32.2
WP_001018855.1\|3089273_3090149_-	sulfate/thiosulfate ABC transporter permease CysW	NA	NA	NA	NA
3089980:3089997	attL	NA	NA	NA	NA
WP_071650596.1\|3090148_3090982_-	sulfate/thiosulfate ABC transporter permease CysT	NA	NA	NA	NA
WP_171775383.1\|3090981_3091998_-	thiosulfate/sulfate ABC transporter substrate-binding protein CysP	NA	NA	NA	NA
WP_171775384.1\|3092157_3092949_-	SDR family oxidoreductase UcpA	Q06VL0	Trichoplusia_ni_ascovirus	1.2e-17	30.6
WP_171775385.1\|3093186_3094086_-	Dyp-type peroxidase	S4VVJ7	Pandoravirus	2.2e-25	33.3
WP_171775386.1\|3094199_3095207_-\|integrase	tyrosine-type recombinase/integrase	A0A0A7NQ69	Enterobacteria_phage	1.6e-149	75.2
WP_171775387.1\|3095270_3095573_-	helix-turn-helix transcriptional regulator	A0A0A7NPW3	Enterobacteria_phage	2.5e-37	82.8
WP_171775388.1\|3095678_3096086_+	hypothetical protein	A0A0A7NPS5	Enterobacteria_phage	5.5e-40	61.7
WP_171775389.1\|3096082_3096241_-	hypothetical protein	NA	NA	NA	NA
WP_171775390.1\|3096667_3096862_+	LapA family protein	NA	NA	NA	NA
WP_088137047.1\|3096831_3097023_+	hypothetical protein	NA	NA	NA	NA
WP_171775391.1\|3097098_3097539_+	hypothetical protein	NA	NA	NA	NA
WP_001624306.1\|3097610_3097793_+	hypothetical protein	NA	NA	NA	NA
WP_024154177.1\|3097780_3098311_+	hypothetical protein	NA	NA	NA	NA
WP_130559554.1\|3098313_3098586_+	hypothetical protein	NA	NA	NA	NA
WP_079958161.1\|3098582_3099512_+	DNA adenine methylase	A0A0M4QWR0	Salmonella_phage	1.9e-64	49.5
WP_171775392.1\|3099508_3100069_+	Myb-like DNA-binding domain-containing protein	NA	NA	NA	NA
WP_171775393.1\|3100065_3100989_+	DNA cytosine methyltransferase	A0A0M3ULA1	Salmonella_phage	3.2e-120	65.8
WP_171775394.1\|3100985_3103457_+	replication endonuclease	A0A0M4RTM8	Salmonella_phage	5.9e-169	46.4
WP_071692095.1\|3103449_3103857_+	hypothetical protein	NA	NA	NA	NA
WP_171775395.1\|3103910_3104084_-	hypothetical protein	NA	NA	NA	NA
WP_170817460.1\|3104108_3104261_-	hypothetical protein	NA	NA	NA	NA
WP_094146523.1\|3104414_3104759_-	hypothetical protein	NA	NA	NA	NA
WP_139146139.1\|3104751_3105054_-	hypothetical protein	NA	NA	NA	NA
WP_171775396.1\|3105552_3105735_+	hypothetical protein	NA	NA	NA	NA
WP_071692093.1\|3106205_3107255_-\|portal	phage portal protein	A0A0A7NPT9	Enterobacteria_phage	5.6e-153	73.9
WP_171775397.1\|3107254_3108988_-	helix-turn-helix domain-containing protein	A0A0A7NV54	Enterobacteria_phage	1.7e-263	75.0
WP_071624435.1\|3109144_3109981_+\|capsid	GPO family capsid scaffolding protein	A0A0A7NRY7	Enterobacteria_phage	4.4e-100	65.8
WP_171775398.1\|3110004_3111090_+\|capsid	phage major capsid protein, P2 family	A0A0A7NQ82	Enterobacteria_phage	1.7e-136	68.4
WP_171775399.1\|3111136_3111970_+\|terminase	terminase	A0A0A7NPX9	Enterobacteria_phage	1.1e-90	66.7
WP_001624329.1\|3112067_3112562_+\|head	head completion/stabilization protein	A0A0A7NPU2	Enterobacteria_phage	3.8e-51	59.5
WP_000864914.1\|3112561_3112762_+\|tail	tail protein X	A0A0A7NV57	Enterobacteria_phage	1.3e-21	80.0
WP_024144919.1\|3112791_3113130_+\|holin	phage holin, lambda family	NA	NA	NA	NA
WP_171775400.1\|3113126_3113570_+	lysozyme	A0A075B8L0	Enterobacteria_phage	7.3e-46	64.6
WP_079892729.1\|3113576_3114068_+\|lysis	lysis protein	A0A2L1IV55	Escherichia_phage	9.1e-21	42.6
WP_171775401.1\|3114526_3115162_+	phage virion morphogenesis protein	A0A0A7NV60	Enterobacteria_phage	3.8e-64	58.9
WP_023170300.1\|3115158_3115749_+\|plate	phage baseplate assembly protein V	A0A0A7NRZ3	Enterobacteria_phage	2.8e-69	69.4
WP_079892726.1\|3115745_3116114_+	GPW/gp25 family protein	A0A0A7NQ90	Enterobacteria_phage	8.0e-38	68.7
WP_023170302.1\|3116100_3116997_+\|plate	baseplate J/gp47 family protein	A0A0A7NPY5	Enterobacteria_phage	6.8e-107	68.8
WP_023170303.1\|3116989_3117517_+\|tail	phage tail protein I	A0A0A7NPV1	Enterobacteria_phage	5.8e-58	62.5
WP_171775402.1\|3117522_3119226_+\|tail	phage tail protein	A0A0M3ULF6	Salmonella_phage	7.3e-118	50.5
WP_171775403.1\|3119225_3119948_+	DUF4376 domain-containing protein	A0A0M4RTP2	Salmonella_phage	2.0e-45	71.8
WP_023170306.1\|3120057_3120432_+	DUF1353 domain-containing protein	I1TQ41	Pseudomonas_phage	4.8e-14	36.5
WP_000980424.1\|3120451_3120940_-\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	1.5e-71	79.5
WP_171775404.1\|3120953_3123914_-\|tail	phage tail tape measure protein	A0A0A7NRZ9	Enterobacteria_phage	1.4e-257	51.9
WP_001627826.1\|3123900_3124059_-\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	2.4e-15	79.6
WP_171775405.1\|3124064_3124421_-\|tail	phage tail protein	A0A0A7NPZ0	Enterobacteria_phage	1.3e-16	55.1
WP_000115856.1\|3124463_3124976_-\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	7.6e-63	68.0
WP_045900664.1\|3124976_3126164_-\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	4.8e-185	81.7
WP_171775406.1\|3126322_3127453_+	phage late control D family protein	A0A0A7NQ97	Enterobacteria_phage	8.1e-158	77.6
WP_024144913.1\|3127498_3127759_+	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_023170313.1\|3127992_3128133_+	type I toxin-antitoxin system Hok family toxin	S5M7Q0	Escherichia_phage	5.7e-13	73.9
WP_171775407.1\|3128418_3128994_-	RpoE-regulated lipoprotein	NA	NA	NA	NA
WP_171775408.1\|3129055_3129505_-	DUF2919 domain-containing protein	NA	NA	NA	NA
WP_000406008.1\|3129491_3129917_-	GNAT family acetyltransferase	NA	NA	NA	NA
WP_000102880.1\|3130129_3130999_+	N-acetylmuramoyl-L-alanine amidase AmiA	A0A0N9SGH1	Paenibacillus_phage	2.8e-17	31.9
WP_171775409.1\|3131001_3131901_+	oxygen-dependent coproporphyrinogen oxidase	NA	NA	NA	NA
WP_171775410.1\|3132420_3133662_+	anaerobic sulfatase maturase	NA	NA	NA	NA
WP_171775411.1\|3133705_3135358_-	sulfatase-like hydrolase/transferase	A0A2P0VMN7	Tetraselmis_virus	4.0e-44	29.2
WP_171775412.1\|3135815_3138095_-	NADP-dependent oxaloacetate-decarboxylating malate dehydrogenase	NA	NA	NA	NA
WP_002954199.1\|3138366_3139317_+	transaldolase	A0A127KNC6	Cyanophage	4.8e-10	30.3
WP_000087325.1\|3139337_3141338_+	transketolase	NA	NA	NA	NA
WP_000700635.1\|3141400_3141631_-	hypothetical protein	NA	NA	NA	NA
WP_001270670.1\|3141758_3142802_-	DUF1176 domain-containing protein	NA	NA	NA	NA
WP_000084033.1\|3142926_3143502_-	GDP-mannose pyrophosphatase NudK	NA	NA	NA	NA
WP_171775413.1\|3145452_3147414_-	formate-dependent uric acid utilization protein AegA	NA	NA	NA	NA
WP_000216815.1\|3147578_3149279_+	nitrate/nitrite two-component system sensor histidine kinase NarQ	NA	NA	NA	NA
3147818:3147835	attR	NA	NA	NA	NA
WP_171775414.1\|3149463_3152577_+	multidrug efflux RND transporter permease AcrD	NA	NA	NA	NA
WP_001386977.1\|3152678_3152738_-	protein YpfM	NA	NA	NA	NA
WP_171775415.1\|3153151_3153508_+	ArsC family reductase	NA	NA	NA	NA
WP_171775416.1\|3153511_3154639_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA
WP_000383839.1\|3154666_3154867_+	YpfN family protein	NA	NA	NA	NA
WP_171775417.1\|3154893_3156912_-\|tRNA	tRNA cytosine(34) acetyltransferase TmcA	NA	NA	NA	NA
WP_001267523.1\|3156927_3157791_-	neutral zinc metallopeptidase	NA	NA	NA	NA
WP_079804421.1\|3157921_3158635_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4R1E8	Synechococcus_phage	9.1e-38	37.5
WP_000331875.1\|3158809_3159844_-	outer membrane protein assembly factor BamC	NA	NA	NA	NA
WP_000494016.1\|3159860_3160739_-	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
WP_072158636.1\|3160818_3161457_+	glycine cleavage system transcriptional repressor	NA	NA	NA	NA
WP_001068686.1\|3161456_3161927_+	thioredoxin-dependent thiol peroxidase	NA	NA	NA	NA
WP_171775418.1\|3161973_3163113_-	glycerate kinase	W6LM47	Streptococcus_phage	1.4e-45	40.1
WP_171775419.1\|3164453_3165641_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000892060.1\|3165917_3166985_-	AI-2E family transporter	NA	NA	NA	NA
WP_171775420.1\|3167192_3168656_+\|protease	beta-barrel assembly-enhancing protease	NA	NA	NA	NA

DBSCAN-SWA_10

3304816 : 3316333

Escherichia_phage(37.5%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001518569.1\|3304816_3305299_+	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	5.2e-29	47.4
WP_171775471.1\|3307470_3307695_+	DinI family protein	K7PKM2	Enterobacterial_phage	2.9e-27	86.3
WP_171776116.1\|3308405_3309218_+	cytolethal distending toxin subunit B family protein	A5LH53	Enterobacteria_phage	1.4e-63	49.8
WP_126487378.1\|3309365_3309731_+	DUF1353 domain-containing protein	I1TQ41	Pseudomonas_phage	9.4e-15	38.2
WP_126487377.1\|3309909_3310452_-	glycoside hydrolase family 108 protein	A0A0U2S643	Escherichia_phage	1.4e-70	65.4
WP_126487376.1\|3310648_3311380_-	pertussis-like toxin subunit ArtA	A0A0U2KD26	Escherichia_phage	1.6e-61	52.4
WP_171775472.1\|3311395_3311812_-	subtilase cytotoxin subunit B	NA	NA	NA	NA
WP_171776117.1\|3311930_3312362_-	subtilase cytotoxin subunit B	A0A0U2KD34	Escherichia_phage	9.1e-17	38.5
WP_171774082.1\|3315233_3316333_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	8.8e-48	42.2

DBSCAN-SWA_11

3588212 : 3596363

Escherichia_phage(16.67%)

integrase,tRNA

attL 3590726:3590739|attR 3597516:3597529

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_171775624.1\|3588212_3588794_-	ORF6N domain-containing protein	A0A1B5FPC0	Escherichia_phage	2.3e-31	50.8
WP_171775626.1\|3588786_3589344_-	transporter	A0A1W6JPH8	Morganella_phage	3.3e-51	57.5
WP_171775627.1\|3589336_3590137_-	antA/AntB antirepressor family protein	A0A0R6PJV6	Moraxella_phage	8.4e-24	42.4
WP_079850022.1\|3590257_3590458_-	AlpA family transcriptional regulator	NA	NA	NA	NA
WP_171775629.1\|3590675_3591110_-	hypothetical protein	NA	NA	NA	NA
3590726:3590739	attL	NA	NA	NA	NA
WP_171775630.1\|3591141_3591519_-	hypothetical protein	NA	NA	NA	NA
WP_171775631.1\|3591648_3592863_-\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	3.7e-140	61.4
WP_079803200.1\|3593179_3593938_-	peptidoglycan DD-metalloendopeptidase family protein	I2E8W3	Clostridium_phage	1.2e-11	39.5
WP_171775632.1\|3594202_3594751_+	isopentenyl-diphosphate Delta-isomerase	NA	NA	NA	NA
WP_000003339.1\|3594845_3596363_-\|tRNA	lysine--tRNA ligase	A0A1V0SAC0	Catovirus	4.8e-89	37.1
3597516:3597529	attR	NA	NA	NA	NA

DBSCAN-SWA_12

3640419 : 3705405

Geobacillus_virus(12.5%)

head,protease,transposase,integrase,tRNA

attL 3636250:3636266|attR 3691883:3691899

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3636250:3636266	attL	NA	NA	NA	NA
WP_079803249.1\|3640419_3640917_+\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA
WP_171775650.1\|3641011_3641719_+	deoxyribonuclease I	NA	NA	NA	NA
WP_085335133.1\|3641793_3642525_+	16S rRNA (uracil(1498)-N(3))-methyltransferase	NA	NA	NA	NA
WP_002954461.1\|3642544_3643492_+	glutathione synthase	NA	NA	NA	NA
WP_001285491.1\|3644266_3644683_+	Holliday junction resolvase RuvX	NA	NA	NA	NA
WP_000098330.1\|3644730_3645417_-	IclR family transcriptional regulator	NA	NA	NA	NA
WP_171775651.1\|3645547_3646528_-	type IV pilus twitching motility protein PilT	NA	NA	NA	NA
WP_079803254.1\|3646545_3647250_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_171775652.1\|3647268_3647835_+	YggT family protein	NA	NA	NA	NA
WP_171775653.1\|3647831_3648122_+	YggU family protein	NA	NA	NA	NA
WP_171775654.1\|3648129_3648723_+	XTP/dITP diphosphatase	NA	NA	NA	NA
WP_171775655.1\|3648715_3649852_+	radical SAM family heme chaperone HemW	NA	NA	NA	NA
WP_171775656.1\|3649967_3651014_-	L-asparaginase 2	NA	NA	NA	NA
WP_000984835.1\|3651202_3651922_-	DUF2884 domain-containing protein	NA	NA	NA	NA
WP_001107574.1\|3651971_3652298_-	YggL family protein	NA	NA	NA	NA
WP_171775657.1\|3652297_3653017_-\|tRNA	tRNA (guanosine(46)-N7)-methyltransferase TrmB	NA	NA	NA	NA
WP_171775658.1\|3653171_3654224_+	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_000091706.1\|3654251_3654527_+	oxidative damage protection protein	NA	NA	NA	NA
WP_000976290.1\|3654639_3655725_+	membrane-bound lytic murein transglycosylase MltC	A0A0H3V0Q1	Geobacillus_virus	5.8e-12	39.0
WP_171775659.1\|3656845_3658981_-	ornithine decarboxylase	NA	NA	NA	NA
WP_171775660.1\|3659405_3660113_+	DUF554 domain-containing protein	NA	NA	NA	NA
WP_171775661.1\|3660455_3661676_+\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	2.3e-73	41.2
WP_171775662.1\|3662321_3662513_-	toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_171775663.1\|3662648_3662816_+	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	1.4e-05	55.3
WP_171774053.1\|3662739_3663129_+	hypothetical protein	NA	NA	NA	NA
WP_171775664.1\|3663542_3664388_+	hypothetical protein	NA	NA	NA	NA
WP_171775665.1\|3664512_3665427_+\|head	Mu-like prophage major head subunit gpT family protein	L7P7Y9	Pseudomonas_phage	8.0e-71	44.3
WP_171775666.1\|3665507_3666083_+	hypothetical protein	NA	NA	NA	NA
WP_080077193.1\|3666097_3666457_+	hypothetical protein	NA	NA	NA	NA
WP_171775667.1\|3667295_3667571_+	hypothetical protein	NA	NA	NA	NA
WP_171775668.1\|3668035_3668365_+	DUF3742 family protein	NA	NA	NA	NA
WP_171775669.1\|3668398_3669892_-	conjugal transfer protein TraG N-terminal domain-containing protein	NA	NA	NA	NA
WP_171776127.1\|3670131_3671019_-\|integrase	integrase domain-containing protein	NA	NA	NA	NA
WP_171775670.1\|3671555_3671861_-	hypothetical protein	NA	NA	NA	NA
WP_171775671.1\|3671841_3672045_-	hypothetical protein	NA	NA	NA	NA
WP_171775672.1\|3674396_3675140_-	4'-phosphopantetheinyl transferase superfamily protein	NA	NA	NA	NA
WP_057394553.1\|3675262_3675742_-	OsmC family protein	NA	NA	NA	NA
WP_171775673.1\|3675765_3676818_-	peptidase C45	NA	NA	NA	NA
WP_171775674.1\|3676814_3677429_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_171775675.1\|3677431_3677716_-	acyl carrier protein	NA	NA	NA	NA
WP_171775676.1\|3677705_3679223_-	AMP-binding protein	A0A1V0SBX8	Catovirus	5.3e-19	24.5
WP_171775677.1\|3679219_3682474_-	amino acid adenylation domain-containing protein	A0A2K9KZV5	Tupanvirus	2.0e-52	25.8
WP_171775678.1\|3682470_3684720_-\|tRNA	class I tRNA ligase family protein	NA	NA	NA	NA
WP_171775679.1\|3684732_3685773_-	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_171775680.1\|3685804_3687160_-	SidA/IucD/PvdA family monooxygenase	NA	NA	NA	NA
WP_171775681.1\|3687218_3688487_-	MFS transporter	NA	NA	NA	NA
WP_171775682.1\|3688479_3689802_-	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_171775683.1\|3689811_3690960_-	cytochrome P450	NA	NA	NA	NA
WP_171775684.1\|3690956_3692150_-	acyl-CoA dehydrogenase family protein	NA	NA	NA	NA
3691883:3691899	attR	NA	NA	NA	NA
WP_171775685.1\|3692181_3694371_-	iron-containing redox enzyme family protein	NA	NA	NA	NA
WP_171775686.1\|3694370_3695303_-	3-oxoacyl-ACP synthase	NA	NA	NA	NA
WP_171776128.1\|3695296_3696163_-	isocitrate lyase/phosphoenolpyruvate mutase family protein	NA	NA	NA	NA
WP_171775687.1\|3696186_3696996_-	thioesterase	NA	NA	NA	NA
WP_171775688.1\|3697699_3698878_-	SfnB family sulfur acquisition oxidoreductase	NA	NA	NA	NA
WP_057394592.1\|3699163_3699868_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_171775689.1\|3699871_3700768_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_171775690.1\|3702152_3702764_-	hypothetical protein	NA	NA	NA	NA
WP_171775691.1\|3703365_3703482_+\|transposase	transposase	Q9MCT5	Escherichia_phage	2.1e-05	64.7
WP_171774249.1\|3704255_3705405_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	8.9e-51	40.9

DBSCAN-SWA_13

3826144 : 3875722

Salmonella_phage(67.35%)

head,portal,transposase,capsid,plate,lysis,tail,terminase,integrase,tRNA

attL 3827566:3827580|attR 3873221:3873235

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_079803328.1\|3826144_3827158_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	1.2e-107	58.6
WP_001144069.1\|3827385_3827601_+	30S ribosomal protein S21	NA	NA	NA	NA
3827566:3827580	attL	NA	NA	NA	NA
WP_079803329.1\|3827798_3829544_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	2.1e-72	38.4
WP_001519776.1\|3829693_3831541_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	8.4e-35	33.7
WP_171775744.1\|3831730_3833089_-\|transposase	IS1182 family transposase	A0A1X9I5T2	Streptococcus_phage	3.2e-84	39.7
WP_171775745.1\|3833499_3834006_+	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
WP_171775746.1\|3834192_3835551_+\|transposase	IS1182 family transposase	A0A1X9I5T2	Streptococcus_phage	1.2e-83	39.5
WP_058215518.1\|3835725_3835944_-	ogr/Delta-like zinc finger family protein	Q53ZE7	Salmonella_virus	4.9e-27	76.4
WP_171775747.1\|3836011_3837112_-	phage late control D family protein	E5G6Q3	Salmonella_phage	9.3e-191	95.4
WP_000980407.1\|3837108_3837594_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	2.7e-65	97.7
WP_171776130.1\|3837590_3840131_-\|tail	phage tail tape measure protein	E5FFG5	Burkholderia_phage	2.7e-108	45.2
WP_000763315.1\|3840357_3840477_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	1.2e-14	94.9
WP_032233623.1\|3840491_3840794_-\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	1.5e-42	94.9
WP_171775748.1\|3840848_3841364_-\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	9.6e-90	97.1
WP_171775749.1\|3841373_3842546_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	2.7e-212	94.4
WP_171775750.1\|3842580_3843186_-	recombinase family protein	A0A0F7LA37	Escherichia_phage	1.2e-78	79.5
WP_171774054.1\|3843215_3843623_+	hypothetical protein	U5P0I1	Shigella_phage	4.4e-05	34.7
WP_171775751.1\|3843625_3844051_+\|tail	tail fiber assembly protein	A0A0M4S6V4	Salmonella_phage	4.3e-27	75.3
WP_171776131.1\|3844022_3844211_-\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	8.2e-07	83.3
WP_171775752.1\|3844277_3845483_-	acyltransferase	A0A088CPR9	Enterobacteria_phage	1.8e-22	27.4
WP_171776132.1\|3845604_3846036_-\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	2.2e-39	53.5
WP_171775753.1\|3847450_3848056_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	4.9e-117	99.0
WP_171775754.1\|3848048_3848957_-\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	2.8e-156	98.0
WP_021293751.1\|3848943_3849303_-	GPW/gp25 family protein	A0A1S6KZZ4	Salmonella_phage	2.1e-59	100.0
WP_171775755.1\|3849299_3849878_-\|plate	phage baseplate assembly protein V	A0A1S6KZX7	Salmonella_phage	6.3e-106	96.9
WP_000343950.1\|3849946_3850393_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	1.9e-65	89.0
WP_001039964.1\|3850385_3850817_-\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	4.0e-73	95.1
WP_171775756.1\|3850912_3851341_-\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	5.8e-64	94.3
WP_000871620.1\|3851337_3851712_-	hypothetical protein	NA	NA	NA	NA
WP_001069891.1\|3851716_3852226_-	lysozyme	A0A1S6KZY9	Salmonella_phage	1.6e-92	97.0
WP_000171565.1\|3852206_3852422_-	hypothetical protein	E5G6N0	Salmonella_phage	5.9e-33	100.0
WP_171775757.1\|3852458_3852629_-\|tail	tail protein X	E5G6M9	Salmonella_phage	1.3e-27	100.0
WP_171775758.1\|3852628_3853093_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	3.2e-84	97.4
WP_171775759.1\|3853186_3853837_-	hypothetical protein	A0A1S6KZX1	Salmonella_phage	7.1e-114	99.1
WP_000730753.1\|3853840_3854905_-\|capsid	phage major capsid protein, P2 family	A0A1S6KZZ3	Salmonella_phage	9.3e-196	99.2
WP_171775760.1\|3854921_3855755_-\|capsid	GPO family capsid scaffolding protein	E5G6M5	Salmonella_phage	1.0e-128	98.9
WP_001098444.1\|3855897_3857664_+\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	97.3
WP_171775761.1\|3857663_3858698_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	1.9e-190	94.8
WP_171775762.1\|3858735_3859407_-	HNH endonuclease	NA	NA	NA	NA
WP_171775763.1\|3859399_3860638_-	ATP-binding protein	NA	NA	NA	NA
WP_001749760.1\|3860955_3861144_-	hypothetical protein	E5G6M0	Salmonella_phage	5.7e-24	91.7
WP_023220912.1\|3861266_3861509_+	hypothetical protein	NA	NA	NA	NA
WP_171775764.1\|3861528_3863949_-	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	94.2
WP_171775765.1\|3863945_3864956_-	phosphoadenosine phosphosulfate reductase family protein	B7SYG0	Stenotrophomonas_phage	3.5e-67	43.2
WP_171775766.1\|3864952_3865798_-	DNA adenine methylase	A0A1S6L011	Salmonella_phage	1.2e-129	81.1
WP_171776133.1\|3865794_3865992_-	hypothetical protein	A5X9G6	Aeromonas_virus	1.6e-13	63.3
WP_171775767.1\|3866486_3867071_-	3'-5' exonuclease	A0A1S6L012	Salmonella_phage	3.6e-85	77.7
WP_097362822.1\|3867067_3867295_-	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	1.3e-35	94.7
WP_001244238.1\|3867294_3867528_-	DUF2732 family protein	A0A1S6L021	Salmonella_phage	2.9e-33	98.7
WP_171775768.1\|3867595_3867928_-	DUF5347 domain-containing protein	A0A1S6L019	Salmonella_phage	3.1e-49	99.0
WP_171775769.1\|3867881_3867995_-	DUF2724 domain-containing protein	A0A1S6L005	Salmonella_phage	1.4e-14	97.2
WP_078086251.1\|3868002_3868512_-	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	4.7e-89	99.4
WP_171775770.1\|3868546_3868783_-	regulator	NA	NA	NA	NA
WP_171776134.1\|3868883_3869507_+	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	4.1e-34	38.6
WP_171775771.1\|3869518_3870412_+	NAD-dependent DNA ligase	NA	NA	NA	NA
WP_058215579.1\|3870415_3871501_+\|integrase	tyrosine-type recombinase/integrase	F1BUS9	Erwinia_phage	2.4e-122	61.7
WP_171775772.1\|3872029_3872290_-	hypothetical protein	NA	NA	NA	NA
WP_171775773.1\|3872513_3873281_-	siderophore-interacting protein	NA	NA	NA	NA
3873221:3873235	attR	NA	NA	NA	NA
WP_086118809.1\|3873512_3874160_+	PadR family transcriptional regulator	NA	NA	NA	NA
WP_000478453.1\|3874156_3875722_-	MCP four helix bundle domain-containing protein	A0A2H4J162	uncultured_Caudovirales_phage	1.4e-11	28.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP053580

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP053581

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection