CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_AP023149	Klebsiella pneumoniae strain SMKP03 plasmid pSMKP03L, complete sequence	0 crisprs	DEDDh	1
NZ_AP023148	Klebsiella pneumoniae strain SMKP03	1 crisprs	DinG,csa3,WYL,cas3,DEDDh,RT	3
NZ_AP023150	Klebsiella pneumoniae strain SMKP03 plasmid pSMKP03M, complete sequence	0 crisprs	RT	2
NZ_AP023151	Klebsiella pneumoniae strain SMKP03 plasmid pSMKP03S, complete sequence	0 crisprs	DEDDh	1

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 110996

112

Salmonella_phage(90.22%)

terminase,portal,integrase,tail,transposase

attL 2452:2471|attR 100258:100277

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_014342074.1\|1549_1762_-	hypothetical protein	J9Q7S8	Salmonella_phage	4.3e-28	80.0
WP_032423093.1\|1761_2097_-	hypothetical protein	J9Q7Z5	Salmonella_phage	4.7e-37	66.7
2452:2471	attL	NA	NA	NA	NA
WP_014342076.1\|2459_2636_-	hypothetical protein	J9Q7G9	Salmonella_phage	4.7e-12	68.8
WP_064185416.1\|2806_5149_-	recombinase RecA	J9Q736	Salmonella_phage	3.3e-28	83.8
WP_019704549.1\|5151_5418_-	hypothetical protein	J9Q7G8	Salmonella_phage	1.7e-34	84.1
WP_114071251.1\|5417_6362_-	exonuclease	J9Q7S6	Salmonella_phage	4.1e-171	92.7
WP_114071252.1\|6422_7430_-	regulator	J9Q7Z3	Salmonella_phage	3.9e-143	87.6
WP_064164595.1\|7548_7980_-	hypothetical protein	J9Q6I8	Salmonella_phage	1.4e-65	91.6
WP_021313787.1\|8126_8426_-	hypothetical protein	NA	NA	NA	NA
WP_021313788.1\|8436_8856_-	hypothetical protein	A0A291AWZ9	Escherichia_phage	6.3e-47	62.6
WP_074425362.1\|9056_9482_-	hypothetical protein	J9Q7S4	Salmonella_phage	2.5e-59	83.7
WP_072196429.1\|9496_10666_-	uracil-DNA glycosylase	J9Q7Z2	Salmonella_phage	5.2e-208	92.8
WP_172879380.1\|10687_11383_-	HNH endonuclease	S5YLC4	Mycobacterium_phage	6.4e-20	37.1
WP_019704545.1\|13929_15162_-	AAA family ATPase	J9Q733	Salmonella_phage	1.3e-212	86.6
WP_172879381.1\|15258_17538_-	porphyrin biosynthesis protein	J9Q7G6	Salmonella_phage	8.8e-244	64.3
WP_014342091.1\|18140_18521_+	transcriptional regulator	NA	NA	NA	NA
WP_064279113.1\|18515_19616_-\|integrase	site-specific integrase	A0A1P8DTG6	Proteus_phage	1.2e-17	28.4
WP_021313793.1\|19965_20325_+	hypothetical protein	NA	NA	NA	NA
WP_064317491.1\|20388_20799_-	type II toxin-antitoxin system YafO family toxin	NA	NA	NA	NA
WP_032440522.1\|20808_21426_-	hypothetical protein	NA	NA	NA	NA
WP_032443559.1\|21520_21766_-	GrxA family glutaredoxin	A0A2I7SAE2	Vibrio_phage	5.3e-14	47.4
WP_021313797.1\|21762_22149_-	hypothetical protein	Q716B1	Shigella_phage	1.4e-45	71.2
WP_032440524.1\|22158_22935_-	phosphate starvation-inducible protein PhoH	W8D063	Erwinia_phage	1.7e-90	66.1
WP_064147380.1\|24244_24544_-	hypothetical protein	J9Q7S1	Salmonella_phage	4.6e-28	65.3
WP_021313107.1\|24540_24693_-	hypothetical protein	J9Q7Z1	Salmonella_phage	1.6e-16	82.0
WP_065801541.1\|24937_25405_-	hypothetical protein	J9Q7R9	Salmonella_phage	2.8e-48	62.7
WP_065801213.1\|25484_26273_-	hypothetical protein	J9Q7Z0	Salmonella_phage	2.9e-69	50.4
WP_172879382.1\|26393_27515_-	DNA primase	J9Q720	Salmonella_phage	2.4e-202	91.1
WP_032440528.1\|27661_29002_-	AAA family ATPase	J9Q7G4	Salmonella_phage	5.4e-241	96.0
WP_172879383.1\|29066_29792_-	hypothetical protein	J9Q7R8	Salmonella_phage	4.8e-127	88.4
WP_021313114.1\|29985_30744_-	DUF2971 domain-containing protein	J9Q7Y9	Salmonella_phage	1.6e-146	98.0
WP_014342115.1\|30789_31146_-	hypothetical protein	J9Q7G3	Salmonella_phage	1.4e-44	97.9
WP_021313115.1\|31151_31817_-	AAA family ATPase	J9Q7R7	Salmonella_phage	2.9e-102	83.7
WP_021313116.1\|31973_32762_-	hypothetical protein	NA	NA	NA	NA
WP_052115713.1\|32762_33104_-	hypothetical protein	A0A222YY00	Escherichia_phage	2.6e-14	41.8
WP_040212606.1\|33577_33829_-	hypothetical protein	J9Q7R6	Salmonella_phage	1.3e-23	72.3
WP_172879384.1\|33831_34524_-	hypothetical protein	J9Q7Y7	Salmonella_phage	1.0e-118	88.3
WP_004109805.1\|34537_34861_-	hypothetical protein	J9Q6E7	Salmonella_phage	2.3e-49	95.3
WP_032422978.1\|34956_36402_-\|tail	tail fiber domain-containing protein	A0A0H4TGH1	Klebsiella_phage	4.4e-39	37.5
WP_172879385.1\|36454_48625_-	DUF1983 domain-containing protein	J9Q713	Salmonella_phage	2.8e-30	59.8
WP_021313122.1\|48641_49253_-\|tail	tail assembly protein	J9Q7F8	Salmonella_phage	4.5e-78	73.9
WP_004109817.1\|49240_50038_-	C40 family peptidase	J9Q7R4	Salmonella_phage	5.4e-140	85.3
WP_004109820.1\|50030_50729_-\|tail	phage minor tail protein L	J9Q7Y5	Salmonella_phage	1.2e-122	87.4
WP_032423010.1\|50815_51151_-\|tail	phage tail protein	J9Q6E1	Salmonella_phage	2.6e-51	84.5
WP_172879386.1\|51194_55754_-	tape measure protein	J9Q712	Salmonella_phage	0.0e+00	68.7
WP_014342129.1\|55761_55986_-	hypothetical protein	J9Q7F7	Salmonella_phage	2.0e-31	93.2
WP_004109835.1\|56111_56429_-	hypothetical protein	J9Q7R3	Salmonella_phage	1.8e-46	93.3
WP_004109839.1\|56490_57237_-	Ig domain-containing protein	J9Q7Y4	Salmonella_phage	3.7e-106	83.0
WP_117027810.1\|57304_57697_-	hypothetical protein	J9Q6D8	Salmonella_phage	5.3e-48	69.0
WP_021313126.1\|57698_58172_-	hypothetical protein	J9Q711	Salmonella_phage	1.9e-76	93.6
WP_021313127.1\|58162_58507_-	hypothetical protein	J9Q7F6	Salmonella_phage	2.2e-53	92.1
WP_172879387.1\|58604_59438_-	hypothetical protein	J9Q7R2	Salmonella_phage	4.1e-130	83.0
WP_023279433.1\|59437_59872_-	hypothetical protein	J9Q7Y3	Salmonella_phage	2.9e-63	84.0
WP_148678805.1\|59919_60291_-	Ig-like domain-containing protein	J9Q6D6	Salmonella_phage	1.5e-28	70.6
WP_004109857.1\|60426_61305_-	hypothetical protein	J9Q710	Salmonella_phage	4.7e-153	94.2
WP_014342135.1\|61331_62231_-	hypothetical protein	J9Q7F4	Salmonella_phage	1.0e-123	82.6
WP_040212596.1\|62253_63828_-\|portal	phage portal protein	J9Q7R1	Salmonella_phage	6.7e-275	88.5
WP_004109863.1\|63860_65117_-\|terminase	terminase	J9Q7Y2	Salmonella_phage	9.4e-248	97.4
WP_004109866.1\|65119_65761_-	DNA-binding protein	J9Q6D4	Salmonella_phage	5.0e-96	88.2
WP_004109869.1\|65936_66203_-	hypothetical protein	J9Q757	Salmonella_phage	1.3e-37	90.9
WP_004109872.1\|66212_67103_-	hypothetical protein	J9Q7I6	Salmonella_phage	5.4e-165	97.0
WP_117027812.1\|67099_67651_-	hypothetical protein	NA	NA	NA	NA
WP_032423019.1\|67640_68282_-	ATP-binding cassette domain-containing protein	J9Q807	Salmonella_phage	6.8e-109	96.7
WP_023279438.1\|68278_68947_-	ParB N-terminal domain-containing protein	J9Q6L1	Salmonella_phage	6.6e-107	91.9
WP_172879388.1\|68946_69651_-	ParB N-terminal domain-containing protein	J9Q756	Salmonella_phage	5.7e-109	89.7
WP_172879389.1\|69710_71270_+	DEAD/DEAH box helicase	J9Q7I4	Salmonella_phage	5.8e-279	92.7
WP_021313134.1\|71272_71551_+	hypothetical protein	J9Q7T9	Salmonella_phage	6.2e-27	70.3
WP_125116973.1\|71612_72152_+	hypothetical protein	NA	NA	NA	NA
WP_142777354.1\|72304_72523_+	hypothetical protein	NA	NA	NA	NA
WP_117027815.1\|72555_73590_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_117027816.1\|73714_74341_+	hypothetical protein	NA	NA	NA	NA
WP_117027824.1\|74508_75027_+	transcriptional regulator	J9Q6L0	Salmonella_phage	5.4e-56	72.3
WP_032440491.1\|75350_76001_+	hypothetical protein	J9Q754	Salmonella_phage	1.9e-106	91.7
WP_172879390.1\|76048_76270_+	hypothetical protein	NA	NA	NA	NA
WP_108993090.1\|76907_77390_-	hypothetical protein	J9Q805	Salmonella_phage	7.2e-63	69.4
WP_080828587.1\|77607_78108_-	hypothetical protein	NA	NA	NA	NA
WP_129490138.1\|78258_78519_-	hypothetical protein	NA	NA	NA	NA
WP_021313141.1\|78533_78815_-	ABC transporter	J9Q753	Salmonella_phage	2.4e-42	84.9
WP_032440494.1\|78941_79349_-	hypothetical protein	NA	NA	NA	NA
WP_074460517.1\|79468_79768_-	hypothetical protein	J9Q7T7	Salmonella_phage	6.5e-30	69.7
WP_004109924.1\|79916_80276_-	hypothetical protein	NA	NA	NA	NA
WP_019704576.1\|81818_83045_-	hypothetical protein	J9Q803	Salmonella_phage	1.6e-119	54.2
WP_019704575.1\|83215_83533_-	hypothetical protein	J9Q750	Salmonella_phage	9.2e-43	74.3
WP_019704574.1\|84147_84894_+	NYN domain-containing protein	NA	NA	NA	NA
WP_071786700.1\|85038_85467_-	GFA family protein	NA	NA	NA	NA
WP_019704573.1\|85740_86100_-	hypothetical protein	NA	NA	NA	NA
WP_019704572.1\|86281_86545_-	hypothetical protein	J9Q7T5	Salmonella_phage	1.7e-29	70.5
WP_052449548.1\|86696_87398_-	hypothetical protein	J9Q6K2	Salmonella_phage	1.5e-77	69.2
WP_004109939.1\|87486_89172_-	DUF4942 domain-containing protein	J9Q747	Salmonella_phage	0.0e+00	98.0
WP_032443587.1\|89561_91631_+	hypothetical protein	NA	NA	NA	NA
WP_172879391.1\|91799_92294_-	hypothetical protein	J9Q6J9	Salmonella_phage	4.6e-81	97.6
WP_019704565.1\|92451_93039_-	ribonuclease HI	J9Q745	Salmonella_phage	3.4e-91	80.2
WP_032423059.1\|93617_93845_-	hypothetical protein	J9Q7H5	Salmonella_phage	7.6e-31	84.0
WP_023279507.1\|94042_94636_-	phage N-6-adenine-methyltransferase	J9Q7T2	Salmonella_phage	5.9e-99	85.3
WP_172879392.1\|94820_95654_-	hypothetical protein	J9Q7Z9	Salmonella_phage	3.3e-63	54.2
WP_032423056.1\|95779_96328_-	3'-5' exonuclease	J9Q6J8	Salmonella_phage	3.2e-75	74.4
WP_050485941.1\|96324_96906_-	hypothetical protein	A0A1B0VMI8	Pseudomonas_phage	4.2e-33	50.4
WP_023279504.1\|97128_97548_-	hypothetical protein	J9Q743	Salmonella_phage	6.5e-52	74.1
WP_040177340.1\|97611_98256_-	AAA family ATPase	J9Q7H4	Salmonella_phage	6.2e-94	77.1
WP_032440507.1\|98255_98732_-	dihydrofolate reductase	J9Q7T1	Salmonella_phage	4.9e-72	79.6
WP_072196937.1\|98728_99124_-	hypothetical protein	J9Q7Z8	Salmonella_phage	5.2e-51	75.6
WP_172879393.1\|99143_100247_-	thymidylate synthase	J9Q6J6	Salmonella_phage	5.7e-180	79.6
WP_172879394.1\|100440_101316_-	nucleoside triphosphate pyrophosphohydrolase family protein	J9Q742	Salmonella_phage	4.5e-140	84.7
100258:100277	attR	NA	NA	NA	NA
WP_119062670.1\|101394_102537_-	ribonucleotide-diphosphate reductase subunit beta	J9Q7H3	Salmonella_phage	2.2e-211	95.5
WP_119062669.1\|102667_104971_-	ribonucleoside-diphosphate reductase subunit alpha	J9Q7T0	Salmonella_phage	0.0e+00	91.1
WP_021313773.1\|105046_105616_-	hypothetical protein	J9Q7Z7	Salmonella_phage	1.1e-94	89.9
WP_072196935.1\|105625_106336_-	hypothetical protein	J9Q6J5	Salmonella_phage	6.6e-73	59.7
WP_172879395.1\|106361_108278_-	AAA family ATPase	J9Q741	Salmonella_phage	2.1e-299	84.5
WP_072196416.1\|108274_108508_-	hypothetical protein	J9Q7H1	Salmonella_phage	4.4e-18	66.1
WP_021313776.1\|108507_109593_-	metallophosphoesterase	J9Q7S9	Salmonella_phage	1.1e-183	84.8
WP_021313777.1\|109781_110276_-	GNAT family N-acetyltransferase	J9Q6J3	Salmonella_phage	1.0e-59	67.1
WP_064152227.1\|110351_110996_-	hypothetical protein	J9Q739	Salmonella_phage	4.9e-99	80.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_AP023148

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_AP023148_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP023148_1

4048847-4048986

Orphan

Consensus_repeat	Method
TGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAACCGAAGCAGCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP023148_1

>merge|NZ_AP023148|1|4048847-4048986|CRISPRCasFinder
TGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAACCGAAGCAGCAGCCCCGGCAAGCGCAGCGCCGCCGGGCACGGAGCCGCTTTATGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAGCCGAAGCAGCAG

>NZ_AP023148|1|1|4048847-4048986|CRISPRCasFinder
TGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAACCGAAGCAGCAG	CCCCGGCAAGCGCAGCGCCGCCGGGCACGGAGCCGCTTTA
TGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAGCCGAAGCAGCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP023148.1\|WP_004177335.1\|4050467_4051064_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	unknown	unknown	gnl\|CDD\|235074
NZ_AP023148.1\|WP_004145825.1\|4057038_4057620_-\|D-sedoheptulose-7-phosphate-isomerase	unknown	unknown	gnl\|CDD\|179012
NZ_AP023148.1\|WP_002889726.1\|4046715_4047771_-\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
NZ_AP023148.1\|WP_004152033.1\|4044760_4046218_+\|cytosol-nonspecific-dipeptidase	unknown	unknown	gnl\|CDD\|184986
NZ_AP023148.1\|WP_004213895.1\|4046260_4046713_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|182099
NZ_AP023148.1\|WP_172879379.1\|4040014_4041415_+\|GABA-permease	unknown	unknown	gnl\|CDD\|182297
NZ_AP023148.1\|WP_049117946.1\|4037120_4038569_+\|NADP-dependent-succinate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|183050
NZ_AP023148.1\|WP_004177336.1\|4051701_4052496_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-C	unknown	unknown	gnl\|CDD\|235423
NZ_AP023148.1\|WP_002889742.1\|4042694_4043939_-\|esterase-FrsA	unknown	unknown	gnl\|CDD\|235337
NZ_AP023148.1\|WP_004213891.1\|4041460_4042153_+\|DNA-binding-transcriptional-regulator-CsiR	unknown	unknown	gnl\|CDD\|183181
NZ_AP023148.1\|WP_002889696.1\|4056196_4056964_-\|class-II-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|372525
NZ_AP023148.1\|WP_002889720.1\|4049231_4050455_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F	unknown	unknown	gnl\|CDD\|235481
NZ_AP023148.1\|WP_002889716.1\|4051070_4051709_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D	unknown	unknown	gnl\|CDD\|236457
NZ_AP023148.1\|WP_002889733.1\|4044044_4044503_-\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236395
NZ_AP023148.1\|WP_002889722.1\|4049013_4049229_-\|(Na+)-NQR-maturation-NqrM	unknown	unknown	gnl\|CDD\|225538
NZ_AP023148.1\|WP_004191871.1\|4047930_4048791_+\|glycerophosphoryl-diester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176522
NZ_AP023148.1\|WP_002889702.1\|4053730_4055074_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-A	unknown	unknown	gnl\|CDD\|235426
NZ_AP023148.1\|WP_004177332.1\|4042238_4042637_-\|sigma-factor-binding-protein-Crl	unknown	unknown	gnl\|CDD\|182882
NZ_AP023148.1\|WP_002889699.1\|4055485_4056226_+\|murein-L,D-transpeptidase	unknown	unknown	gnl\|CDD\|225577
NZ_AP023148.1\|WP_004147186.1\|4052488_4053727_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B	unknown	unknown	gnl\|CDD\|235425

Protein	Function_ID	Function_description	E-value
NZ_AP023148.1\|WP_004177335.1\|4050467_4051064_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	gnl\|CDD\|235074	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional.	4.25239e-127
NZ_AP023148.1\|WP_004145825.1\|4057038_4057620_-\|D-sedoheptulose-7-phosphate-isomerase	gnl\|CDD\|179012	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase.	2.35176e-148
NZ_AP023148.1\|WP_002889726.1\|4046715_4047771_-\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
NZ_AP023148.1\|WP_004152033.1\|4044760_4046218_+\|cytosol-nonspecific-dipeptidase	gnl\|CDD\|184986	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional.	0
NZ_AP023148.1\|WP_004213895.1\|4046260_4046713_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|182099	PRK09831, PRK09831, GNAT family N-acetyltransferase.	1.35875e-84
NZ_AP023148.1\|WP_172879379.1\|4040014_4041415_+\|GABA-permease	gnl\|CDD\|182297	PRK10197, PRK10197, GABA permease.	0
NZ_AP023148.1\|WP_049117946.1\|4037120_4038569_+\|NADP-dependent-succinate-semialdehyde-dehydrogenase	gnl\|CDD\|183050	PRK11241, gabD, NADP-dependent succinate-semialdehyde dehydrogenase I.	0
NZ_AP023148.1\|WP_004177336.1\|4051701_4052496_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-C	gnl\|CDD\|235423	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional.	1.37213e-153
NZ_AP023148.1\|WP_002889742.1\|4042694_4043939_-\|esterase-FrsA	gnl\|CDD\|235337	PRK05077, frsA, esterase FrsA.	0
NZ_AP023148.1\|WP_004213891.1\|4041460_4042153_+\|DNA-binding-transcriptional-regulator-CsiR	gnl\|CDD\|183181	PRK11534, PRK11534, DNA-binding transcriptional regulator CsiR; Provisional.	2.66819e-151
NZ_AP023148.1\|WP_002889696.1\|4056196_4056964_-\|class-II-glutamine-amidotransferase	gnl\|CDD\|372525	pfam13230, GATase_4, Glutamine amidotransferases class-II. This family captures members that are not found in pfam00310.	1.08772e-144
NZ_AP023148.1\|WP_002889720.1\|4049231_4050455_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F	gnl\|CDD\|235481	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional.	0
NZ_AP023148.1\|WP_002889716.1\|4051070_4051709_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D	gnl\|CDD\|236457	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated.	1.0782e-142
NZ_AP023148.1\|WP_002889733.1\|4044044_4044503_-\|xanthine-phosphoribosyltransferase	gnl\|CDD\|236395	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated.	2.19173e-113
NZ_AP023148.1\|WP_002889722.1\|4049013_4049229_-\|(Na+)-NQR-maturation-NqrM	gnl\|CDD\|225538	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown].	5.41902e-29
NZ_AP023148.1\|WP_004191871.1\|4047930_4048791_+\|glycerophosphoryl-diester-phosphodiesterase	gnl\|CDD\|176522	cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.	6.30985e-129
NZ_AP023148.1\|WP_002889702.1\|4053730_4055074_-\|Na(+)-translocating-NADH-quinone-reductase-subunit-A	gnl\|CDD\|235426	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional.	0
NZ_AP023148.1\|WP_004177332.1\|4042238_4042637_-\|sigma-factor-binding-protein-Crl	gnl\|CDD\|182882	PRK10984, PRK10984, sigma factor-binding protein Crl.	3.74492e-83
NZ_AP023148.1\|WP_002889699.1\|4055485_4056226_+\|murein-L,D-transpeptidase	gnl\|CDD\|225577	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown].	1.01465e-109
NZ_AP023148.1\|WP_004147186.1\|4052488_4053727_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B	gnl\|CDD\|235425	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional.	0

>NZ_AP023148.1|WP_004191871.1|4047930_4048791_+|glycerophosphoryl-diester-phosphodiesterase
MKKILTALCLLATAGAWAAPQLIAHRGGTGDAPENTLPAIKLALENNAEAIWVTVQLSRDGVPVLYRSSDLSALTNSEGKVSSLTAAELAKVDAGWKWGGDNHPWRGKQATIPTLQSVLQQWPHTFFYIDIKSPDADPTVMGQRLLEVLKTTDSLDRVRVYSTEDRYIAALPPAIPRFVTRSETRTRLANISLSHQCQPASQRDGEQWYGLELKRKVEVVEKFTLGEGISPATLTWDKEAMDCFRSQDKAHIIFFGINSAEDYRTAIELGADGVMVDSPAQAKSWQ
>NZ_AP023148.1|WP_002889726.1|4046715_4047771_-|DNA-polymerase-IV
MRKIIHVDMDCFFAAVEMRDNPALRDIPLAIGGSRVQRGVISTANYPARKFGVRSAMPTATALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVSDSEHCHGSATLIAQEIRQTIERELRLTASAGVAPVKFLAKIASDMNKPNGQFVIAPHQVAEFVRALPLAKIPGVGKVSAAKLENMGLRTCGDVQNSDLAMLLKRFGKFGRILWERSHGIDEREIHNDRQRKSVGVERTLAEDIHEWPECEAIIENLYPELERRLAKVKPDLLIARQGIKLKFNDFQLTTQEHVWPRLNKEDLIATAHKAWDERRGGRGVRLVGLHVTLLDPQLERQLLLGI
>NZ_AP023148.1|WP_004213895.1|4046260_4046713_-|GNAT-family-N-acetyltransferase
MHIRAYRDSDLPLLCQIFLRAVRETASRDYTPGQIAAWAQVDETRWRQKLADSIGLVAMVNSQPVGFITAIGTHIDLLFVSPDRARQGIGGALIEALCVQYPAQILTVDASITAKPCFTAHGFKVVAEQRVAARGEWFINYRMEKRVALR
>NZ_AP023148.1|WP_004152033.1|4044760_4046218_+|cytosol-nonspecific-dipeptidase
MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEHIMGWAKEKGLHAERDQVGNILIRKGATAGMENRKPVALQAHLDMVPQKNNDTVHDFVKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVLADDSVAHGPLEVLLTMTEEAGMDGAFGLQANWLQADILINTDSEEEGEIYMGCAGGIDFTSNLALTREAIPAGFQSFKVTLKGLKGGHSGGDIHLGLGNANKLLSRFLAGHADELDLRLVDFNGGTLRNAIPREAYATVAVAADKADALKALVNTYQALLKNELEAKEKNLVVLVEAVDNDKAALTQASRDTFIRLLNATPNGVIRNSDVAKGVVETSLNVGVVTMTDDNVQIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEAKGAYPGWQPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYPEMDMVSIGPTITGPHSPDEQVHIESVGQYWTLLTELLKAIPAK
>NZ_AP023148.1|WP_002889733.1|4044044_4044503_-|xanthine-phosphoribosyltransferase
MSEKYVVTWDMLQIHARKLASRLLPVEQWKGIIAVSRGGLVPGALLARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIREMYPKAHFVTIFAKPAGRPLVDDYVVDIPQDTWIEQPWDMGVVFVPPIAGR
>NZ_AP023148.1|WP_002889742.1|4042694_4043939_-|esterase-FrsA
MSQANLSETLFKPRFKHPETSTLVRRFSAGKPQAMQSALSGNHVDHWYRLINRLMWIWRGVTPQEILDVQARIVMSEAERTDPELFDTVIGYRGGNWIFEWAKEAMQWQQKAGQEADPLLSGRHWLHASNLYSIAAYPHIKGDELAEQAQALANRAYEEAAQRLPGSLRELEFTIPGGSPITGFLHMPKGEGPFPTVLMCGGLDSLQTDYYNLYENYFSPLGIAMLTIDMPSIGFSSKWTLNQDTSLLHQHALRHLENVPWIDHTRVAAFGFRFGANIAVRLGYLEPQRLKAVACLGPVVHGLLVDPLHQGRVPEMYLDVLASRLGMHDASDEALRVELNRYSLKTQGLLGRRCPTPMLSGFWKDDPFSPEEESRLITSSSADGKLLEIPFNPVYRNFDHALRQIARWINHRFG
>NZ_AP023148.1|WP_004177332.1|4042238_4042637_-|sigma-factor-binding-protein-Crl
MTLPSGHLKSKLIKKFTALGPYIREEQCHDNRFFFDCLAVCVNVKPAPEKREFWGWWMEMEAQESRFTYSYQFGLFNKEGSWQAVDIGDPEVSDRLEKTLREFHERAAALLTTFNLKLEPADDFSEPVRLRA
>NZ_AP023148.1|WP_004213891.1|4041460_4042153_+|DNA-binding-transcriptional-regulator-CsiR
MTAIPQATAIDGYRWLKNDIIRGVYHPDEKLRMSLLTSRYGLGVGPLREALSQLVAERLVTVVNQKGYRVAPMSEQELLDIFDARANMEAMLVRLAIERGGDEWEAELLARAHLLNKLESCEASEHLLDEWDQRHQAFHTAIVAGCGSQYLLQMRERLFDLAARYRFIWLRTTVLSVEMLEDKHVQHQTLVDAILARDAEQASALMREHLLTPIPIIQQAMAGKLSPQAG
>NZ_AP023148.1|WP_172879379.1|4040014_4041415_+|GABA-permease
MGQLSQSQDLGAGLKSRHVTMLSIAGVIGASLFVGSSVAIAEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWFWVLVIPLEANIAAIILHSWVPGVPVWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIVLGAVAITGFYPYAEVSGISRLWDHGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPDKHIVRATNSVIWRISIFYLCSIFIVVALIPWNMPGLKSIGSYRSVLELLHIPYAKLIMDGVILLSVTSCLNSALYTASRMLYSLSRRGDAPAIMGRTNRSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKILQAQGGEIRLRMWLYPYLTWLVIAFITFVLVVMLFRPAQQLEVISTGLLALGIICAVPIMSRWKKLVLWQKLPLQNTR
>NZ_AP023148.1|WP_049117946.1|4037120_4038569_+|NADP-dependent-succinate-semialdehyde-dehydrogenase
MQLNDMTLFRQQALIDGQWRDAPNGDVIAVTNPANGEQLGSVPKMGADETREAIEAANRALPAWRALTAKERANILRRWFDLMMENQDDLARLMTLEQGKPLAEAKGEISYAASFIEWFAEEGKRIYGDTIPGHQADKRLLVIKQPIGVTAAITPWNFPAAMITRKAGPALAAGCTMVLKPASQTPFSALALAELANRAGIPAGVFNVVTGSAGAVGGELTSNPLVRKLSFTGSTEIGRQLMEQCAKDIKKVSLELGGNAPFIVFDDADLDKAVEGALASKFRNAGQTCVCANRLYVQNGVYDRFAEKLQQAVEKLRIGDGLQDGVTTGPLIDEKAVAKVEEHIADAIAKGAKVVTGGKPHALGGNFFQPTILVNVPDSAKVAKEETFGPLAPLFRFKDEADVIAQANDTEFGLAAYFYARDLSRVFRVGEALEYGIIGINTGIISTEVAPFGGVKASGLGREGSKYGIEDYLEIKYMCIGL
>NZ_AP023148.1|WP_002889722.1|4049013_4049229_-|(Na+)-NQR-maturation-NqrM
MLTVFIATFVIFALVILGMSLGYLVKRKSIQGSCGGISALGLEKVCDCPEPCDARKKRLAREAQRQQRRIL
>NZ_AP023148.1|WP_002889720.1|4049231_4050455_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F
MEIILGVVMFTLIVLVLSGLILAARSKLVNAGDVVIEINNEADKQIRTPAGDKLLNTLSSNGIFVSSACGGGGSCGQCRVTVKEGGGDILPTELSHITKRDAKAGCRLACQVAVKQNMKIELPEEIFGVKKWECEVISNDNKATFIKELKLRIPEGEVVPFRAGGYIQIECPPHKVAYADFDVPDEYRSDWDKFNLFRYVSEVKEPTLRAYSMANYPEEKGIIMLNVRIATPPPKVPDAPPGIMSSYIWSLKPGDKVTISGPFGEFFAKETDAEMVFIGGGAGMAPMRSHIFDQLKRLHSTRKISFWYGARSLREMFYDEEFEQLARDNPNFTFHVALSDPLPEDNWTGHTGFIHNVLYENYLRDHPAPEDCEFYMCGPPVMNAAVIKMLKDLGVEDENILLDDFGG
>NZ_AP023148.1|WP_004177335.1|4050467_4051064_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E
MAHYISLFVRAVFVENMALAFFLGMCTFLAVSKKVSTAFGLGVAVTVVLGLAVPINNLVYNLVLRDGALVEGVDLSFLNFITFIGVIAALVQILEMILDKYFPALYNALGIFLPLIAVNCAIFGGVSFMVQRDYNFPESIVYGFGSGIGWMLAIVAMAGIREKMKYANVPAGLRGLGITFITTGLMALGFMSFSGVQL
>NZ_AP023148.1|WP_002889716.1|4051070_4051709_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D
MAEQSDMKEVKRVLVGPLIANNPIALQVLGVCSALAVTTKLETAFVMTIAVTLVTAFSSMFISMIRHHIPNSVRIIVQMAIIASLVIVVDQLLRAFAYETSKQLSVFVGLIITNCIVMGRAEAYAMKSPPLASFMDGIGNGLGYGAILIIVGFLRELIGSGKLFGITVLETVQNGGWYQPNGLFLLAPSAFFIIGLLIWALRSWKPEQQEKE
>NZ_AP023148.1|WP_004177336.1|4051701_4052496_-|Na(+)-translocating-NADH-quinone-reductase-subunit-C
MAEKKSNDSIGKTLLVVLVLCLVCSIVVAGSAVGLKSRQQAQRALDKQRNILAVSGLMHPGMDADAVADTFAARITPRLVNLATGELLEKDPGKFNQAQALKDPQQSMALDASQDPAGIKRRSNLAEIYLVRDAQQKIEQVVLPIYGNGLWSMMYAFVALDVDGRTVKGITYYDQGETPGLGGEVENPNWRQQFVGKQVLDDNGMPALKVVKGGARAGDLHAVDGLSGATLTSNGVQHSFDFWMGELGFGPFLKKVREGELNNG
>NZ_AP023148.1|WP_004147186.1|4052488_4053727_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B
MGLKHLIEKLEPHFTHGGKLEKYYPLYEAAATIFYTPGQVTRGAAHVRDAIDLKRMMILVWFAVFPAMFWGMYNVGLQTIPALHKLYGAEQLQQAIANNWHYSVAQWLGVSFSADAGWLSMMTLGAVFFLPIYITVFIVGGFWEVLFAIVRKHEINEGFFVTSILFALIVPPTLPLWQAALGISFGVVIAKEIFGGTGRNFLNPALAGRAFLFFAYPAQISGDLVWTAADGFSGATPLSQWASGGGEALVNVATGVPVSWMDAFLGNIPGSIGEVSTLMIFIGGAIILFGRVASWRIVAGVMIGMIATATLFNVIGSDTNPMFAMPWYWHLVLGGFAFGMMFMATDPVSASFTDKGKWSYGVLIGVMCVLIRVVNPAYPEGMMLAILFANLFAPLFDYLVVQANIKRRKSRG
>NZ_AP023148.1|WP_002889702.1|4053730_4055074_-|Na(+)-translocating-NADH-quinone-reductase-subunit-A
MIKITKGLDLPIAGMPLQQISPAPAVKRVALLGEEYVGMRPAMAVKEGDRVKKGQILFEDKKIPGVCFTAPASGIVSAIHRGERRVLQSVVIDIEGNDAVAFTRYAADALAELPRDTVQQQLLASGQWTALRTRPFSKTPLPGSTPAAIFVNAMDTNPLAAEPQPIILAERAAFDAGLTVLTRLTDGKVHVCQPSGGKLGGHPLGQVCFNQFSGPHPAGLPGTHIHFLEPVSLNKQVWHLNYQDAIAIGKLFLDGELYCERIIALGGPQVTSPRLVKTTLGASLEDLLAGELQEGENRVISGSVLSGARAHGPHAFLGRFHLQVSVVKEGREKELFGWVMPGKEKFSITRTTLGHFFKRKRFHFSTDTNGGERAMVPIGNYERVMPLDILPTILLRDLLAGDTDSAQALGCLELDEEDLALCTYVCPGKYEYGPALRSVLTRIEQEG
>NZ_AP023148.1|WP_002889699.1|4055485_4056226_+|murein-L,D-transpeptidase
MRKIALFIAMLLLPCVSFAGLLSSNSPTTPVSKEYKQQLMGSPVYIEIFKEERMLDLYVKMGETYQLLDSYRICNYSGGLGPKQRQGDFKSPEGFYNVTRSQLKPDSRFYKAINIGFPNAYDRAHGYEGKYLMIHGDCVSVGCYAMTDSGIDEIFQFVTGALVFGQPSVQVSIYPFRMTNANMERHKYSYYADFWKQLKPGYDYFQQTHKPPVVSVTDGRYVVSKPLSHEVVQPQLASNYTLPETK
>NZ_AP023148.1|WP_002889696.1|4056196_4056964_-|class-II-glutamine-amidotransferase
MCELLGMSANVPTDICFSFTGLVQRGGGTGPHKDGWGITFYEGKGCRTFKDPQPSFQSPIAKLVQDYPIKSCSVVAHIRQANRGRVALENTHPFTRELWGRNWTYAHNGQLKGYKSLKTGNFHPVGETDSEKAFCWLLHRLTERYPRTPGNMLGVFKYIATLAGELREKGVFNMLLSDGRYVMAFCSTNLHWITRRAPFGVAKLLDQDVEIDFQRETTPNDVVTVIATQPLTANETWHKIMPGEWALFCLGERVV
>NZ_AP023148.1|WP_004145825.1|4057038_4057620_-|D-sedoheptulose-7-phosphate-isomerase
MYQDLIRNELNEAAETLANFLQDEANIHAIQRAAVLLADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHLSCVSNDFGYEYVFSRYVESVGRAGDVLLGISTSGNSGNVIKAIEAARAQGMKVITLTGKDGGKMAGSADVEIRVPHFGYADRIQEIHIKVIHILIMLIEKEMAKG

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1681452 : 1691357

Enterobacteria_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_172879291.1\|1681452_1682715_+	hypothetical protein	B3VD19	Klebsiella_phage	2.5e-06	26.0
WP_014343305.1\|1682981_1684388_+	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	4.7e-38	28.7
WP_014343304.1\|1684610_1685675_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.2e-105	55.0
WP_004175258.1\|1685701_1686571_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	5.7e-111	67.0
WP_021313306.1\|1686602_1687493_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	2.8e-28	34.2
WP_004175260.1\|1687507_1688062_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	1.9e-51	57.6
WP_004175261.1\|1688241_1689408_+	UDP-glucose 6-dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	4.1e-112	54.7
WP_022631332.1\|1689830_1689953_-	small membrane protein	NA	NA	NA	NA
WP_004175262.1\|1690352_1691357_-	NAD-dependent epimerase	E3T4Y8	Cafeteria_roenbergensis_virus	1.8e-31	29.5

DBSCAN-SWA_2

2615139 : 2626026

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004190234.1\|2615139_2618247_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.5
WP_004176258.1\|2618301_2619567_+	MFS transporter	NA	NA	NA	NA
WP_032431771.1\|2619597_2620686_-	AAA family ATPase	A0A077SLJ9	Escherichia_phage	1.2e-209	99.7
WP_004176262.1\|2620772_2621033_-	hypothetical protein	A0A077SK33	Escherichia_phage	5.4e-41	98.8
WP_023282555.1\|2621330_2622191_+	class A extended-spectrum beta-lactamase SHV-27	A0A077SL40	Escherichia_phage	2.9e-155	99.3
WP_002210513.1\|2622211_2622973_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_002903955.1\|2623233_2624136_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
WP_004190239.1\|2624147_2625413_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	3.9e-233	99.5
WP_002210516.1\|2625405_2626026_+	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_3

3293050 : 3302524

Brazilian_cedratvirus(16.67%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_117255209.1\|3293050_3294772_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	7.6e-14	34.8
WP_002898014.1\|3294816_3295518_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|3295871_3296090_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_002896522.1\|3296220_3298500_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
WP_002896520.1\|3298530_3298848_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_002896516.1\|3299173_3299395_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_004150848.1\|3299471_3301412_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.9e-37	40.5
WP_172879331.1\|3301408_3302524_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_AP023150

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2939 : 52380

Escherichia_phage(40.0%)

integrase,transposase

attL 23812:23871|attR 51765:52586

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004197635.1\|2939_3734_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	5.5e-52	88.7
WP_017899884.1\|3931_4948_-	hypothetical protein	NA	NA	NA	NA
WP_053389906.1\|4958_5273_-	hypothetical protein	NA	NA	NA	NA
WP_017899885.1\|5299_5695_-	hypothetical protein	NA	NA	NA	NA
WP_013023785.1\|5863_6169_-	type II toxin-antitoxin system toxin CcdB	NA	NA	NA	NA
WP_001568025.1\|6170_6389_-	type II toxin-antitoxin system antitoxin CcdA	NA	NA	NA	NA
WP_013023783.1\|7206_7497_-	hypothetical protein	NA	NA	NA	NA
WP_013023782.1\|7493_8621_-	DUF4238 domain-containing protein	NA	NA	NA	NA
WP_015344964.1\|8654_10247_-	hypothetical protein	NA	NA	NA	NA
WP_013023780.1\|10453_11233_-	hypothetical protein	NA	NA	NA	NA
WP_013023779.1\|11245_11746_-	hypothetical protein	NA	NA	NA	NA
WP_013023778.1\|12020_12284_+	hypothetical protein	NA	NA	NA	NA
WP_013023777.1\|12280_12847_+	hypothetical protein	NA	NA	NA	NA
WP_013023776.1\|12877_13372_+	hypothetical protein	NA	NA	NA	NA
WP_048337418.1\|13415_13784_+	hypothetical protein	NA	NA	NA	NA
WP_004098931.1\|13817_14021_+	hemolysin expression modulator Hha	NA	NA	NA	NA
WP_017899889.1\|14069_14327_+	hypothetical protein	NA	NA	NA	NA
WP_009653916.1\|14402_14657_+	hypothetical protein	NA	NA	NA	NA
WP_013609504.1\|14792_15569_-	DUF2971 domain-containing protein	NA	NA	NA	NA
WP_017899891.1\|15809_16133_-	hypothetical protein	NA	NA	NA	NA
WP_013023770.1\|17371_18553_+	DUF4268 domain-containing protein	NA	NA	NA	NA
WP_013023768.1\|19744_20602_-	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
WP_004171457.1\|20594_20672_-	RepA leader peptide Tap	NA	NA	NA	NA
WP_172879396.1\|20903_21173_-	replication regulatory protein RepA	NA	NA	NA	NA
WP_014343478.1\|21290_21770_-	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	2.7e-17	31.7
WP_001323889.1\|21973_23551_-	PAS domain-containing methyl-accepting chemotaxis protein	A0A1B0V854	Salmonella_phage	1.2e-95	99.4
23812:23871	attL	NA	NA	NA	NA
WP_001067855.1\|23874_24579_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000240536.1\|25334_26186_+	replication protein	NA	NA	NA	NA
WP_001043265.1\|26493_27309_+	sulfonamide-resistant dihydropteroate synthase Sul2	A0A0B5J4J5	Pandoravirus	3.5e-09	27.6
WP_001082319.1\|27369_28173_+	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA
WP_000480968.1\|28172_29009_+	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
WP_001067855.1\|29069_29774_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000018329.1\|29924_30740_+	aminoglycoside O-phosphotransferase APH(3')-Ia	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	6.1e-163	100.0
WP_001067855.1\|30929_31634_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000557454.1\|32420_33281_-	aminoglycoside N-acetyltransferase AAC(3)-IId	NA	NA	NA	NA
WP_172879397.1\|33513_34218_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	4.0e-139	99.6
WP_000845048.1\|34688_35702_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_064765190.1\|35993_36548_+	AAC(6')-Ib family aminoglycoside 6'-N-acetyltransferase	NA	NA	NA	NA
WP_001749986.1\|36644_37097_+	NAD(+)--rifampin ADP-ribosyltransferase Arr-3	NA	NA	NA	NA
WP_001749985.1\|37229_37703_+	trimethoprim-resistant dihydrofolate reductase DfrA27	G3MBI7	Bacillus_virus	1.4e-15	29.1
WP_001749984.1\|37883_38729_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA16	NA	NA	NA	NA
WP_000679427.1\|38845_39193_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|39186_40026_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000050481.1\|40430_41972_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_003833285.1\|43350_43803_+	SgcJ/EcaC family oxidoreductase	NA	NA	NA	NA
WP_065908739.1\|43844_44489_-	quinolone resistance pentapeptide repeat protein QnrB91	NA	NA	NA	NA
WP_000259031.1\|44979_45819_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000376623.1\|45946_46447_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001389365.1\|46953_47718_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_001137892.1\|48210_48795_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_000004159.1\|48794_50033_-	MFS transporter	NA	NA	NA	NA
WP_000219391.1\|50029_50935_-	Mph(A) family macrolide 2'-phosphotransferase	NA	NA	NA	NA
WP_001067855.1\|51056_51761_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000844627.1\|52137_52380_+\|transposase	transposase	NA	NA	NA	NA
51765:52586	attR	NA	NA	NA	NA

DBSCAN-SWA_2

69884 : 76964

Escherichia_phage(28.57%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001493762.1\|69884_70457_-	recombinase family protein	M9Q1K0	Clostridium_phage	3.4e-19	39.4
WP_012477564.1\|70593_71184_-	plasmid pRiA4b ORF-3 family protein	NA	NA	NA	NA
WP_077256884.1\|71234_71810_+	DUF4113 domain-containing protein	F1C5A5	Cronobacter_phage	1.6e-45	59.3
WP_000780222.1\|71956_72238_-	helix-turn-helix transcriptional regulator	A0A2I6TC97	Escherichia_phage	1.3e-08	38.0
WP_000493286.1\|72218_72548_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A088CBP5	Shigella_phage	2.4e-09	44.2
WP_048337415.1\|72783_73041_+	hypothetical protein	NA	NA	NA	NA
WP_001067858.1\|73074_73779_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_001568051.1\|74197_74428_-	hypothetical protein	NA	NA	NA	NA
WP_001568050.1\|74519_74747_-	hypothetical protein	NA	NA	NA	NA
WP_001568049.1\|75426_75747_-	hypothetical protein	NA	NA	NA	NA
WP_011977779.1\|75781_76036_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	4.0e-12	48.8
WP_001568047.1\|76223_76415_-	hypothetical protein	NA	NA	NA	NA
WP_013214014.1\|76457_76964_-	antirestriction protein ArdA	G9FHQ1	Rhodococcus_virus	1.2e-07	31.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_AP023151

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

12403 : 54475

Klebsiella_phage(86.0%)

tail,head,terminase,capsid,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_117034393.1\|12403_13534_+	DUF1983 domain-containing protein	J9Q713	Salmonella_phage	2.0e-23	44.9
WP_172879399.1\|13537_13846_+	hypothetical protein	A0A248SL87	Klebsiella_phage	4.8e-28	53.5
WP_060577940.1\|13848_14496_+	hypothetical protein	A0A248SKJ6	Klebsiella_phage	1.9e-74	58.8
WP_117022625.1\|14599_14833_+	cor protein	Q38624	Escherichia_phage	5.1e-22	59.2
WP_117022626.1\|14910_16059_+\|tail	tail fiber domain-containing protein	A0A0H4TGH1	Klebsiella_phage	2.5e-37	37.9
WP_087749700.1\|16131_17109_-	ParB/RepB/Spo0J family plasmid partition protein	Q6UAV8	Klebsiella_phage	3.4e-160	90.0
WP_023339381.1\|17111_18275_-	plasmid-partitioning protein SopA	Q6UAV7	Klebsiella_phage	2.1e-225	98.4
WP_060577966.1\|18907_20830_+	protelomerase	Q6UAV6	Klebsiella_phage	0.0e+00	93.4
WP_065519960.1\|20884_21664_-	hypothetical protein	Q6UAV5	Klebsiella_phage	9.1e-116	80.5
WP_040108080.1\|21660_21891_-	hypothetical protein	NA	NA	NA	NA
WP_032413547.1\|21887_22052_-	host cell division inhibitor Icd-like protein	Q6UAV3	Klebsiella_phage	2.8e-19	96.3
WP_100097910.1\|22580_23714_+	hypothetical protein	NA	NA	NA	NA
WP_117022623.1\|23740_24265_-	hypothetical protein	NA	NA	NA	NA
WP_048290287.1\|24364_24697_-	hypothetical protein	O64344	Escherichia_phage	2.5e-46	86.2
WP_094642885.1\|24699_25026_-	hypothetical protein	O64345	Escherichia_phage	8.9e-41	70.1
WP_048290289.1\|25012_25219_-	hypothetical protein	NA	NA	NA	NA
WP_100097911.1\|25211_29216_-	origin of replication binding family protein	A0A2I6TD01	Escherichia_phage	0.0e+00	81.4
WP_172879400.1\|29466_30075_-	helix-turn-helix domain-containing protein	Q6UAU6	Klebsiella_phage	3.8e-101	90.6
WP_032408972.1\|30155_30365_+	Cro/Cl family transcriptional regulator	Q6UAU5	Klebsiella_phage	7.7e-30	92.8
WP_110924981.1\|30354_31092_+	phage antitermination protein	Q6UAU4	Klebsiella_phage	2.8e-119	84.5
WP_172879401.1\|31503_32112_+	3'-5' exonuclease	Q6UAU3	Klebsiella_phage	1.9e-97	87.5
WP_096913198.1\|32239_32572_+	hypothetical protein	Q6UAU1	Klebsiella_phage	3.3e-43	80.9
WP_064148019.1\|32572_32866_+	hypothetical protein	Q6UAT9	Klebsiella_phage	4.7e-41	84.5
WP_071067636.1\|32862_33204_+	hypothetical protein	Q6UAT8	Klebsiella_phage	7.2e-25	81.2
WP_048292306.1\|33196_33523_+	hypothetical protein	Q6UAT7	Klebsiella_phage	1.1e-51	94.4
WP_023339395.1\|33543_33771_+	hypothetical protein	O64355	Escherichia_phage	2.8e-25	80.3
WP_023339393.1\|34122_34410_-	helix-turn-helix transcriptional regulator	Q6UAT4	Klebsiella_phage	1.7e-43	96.8
WP_023339392.1\|34409_34718_-	type II toxin-antitoxin system RelE/ParE family toxin	Q6UAT3	Klebsiella_phage	3.9e-46	94.2
WP_064388657.1\|34888_35110_+	hypothetical protein	O64358	Escherichia_phage	5.1e-32	89.0
WP_100097915.1\|35121_35349_+	winged helix-turn-helix domain-containing protein	Q6UAT1	Klebsiella_phage	4.9e-30	85.3
WP_100097916.1\|35619_36681_+	site-specific DNA-methyltransferase	Q6UAT0	Klebsiella_phage	1.1e-169	92.0
WP_100097917.1\|36739_37051_+	hypothetical protein	Q6UAS9	Klebsiella_phage	4.3e-45	90.1
WP_057172008.1\|37047_37539_+	hypothetical protein	Q6UAS8	Klebsiella_phage	1.2e-81	89.6
WP_100097918.1\|37555_38026_+	hypothetical protein	Q6UAS7	Klebsiella_phage	1.9e-60	79.5
WP_172879398.1\|38115_38271_+	hypothetical protein	Q6UAS5	Klebsiella_phage	2.0e-11	93.9
WP_100097919.1\|38279_38579_+	DUF4406 domain-containing protein	Q6UAS4	Klebsiella_phage	1.1e-50	93.9
WP_100097920.1\|38958_39321_+	HNH endonuclease	Q6UAS2	Klebsiella_phage	1.3e-61	92.5
WP_071557828.1\|39317_39641_+	hypothetical protein	NA	NA	NA	NA
WP_172879402.1\|39637_40069_+	hypothetical protein	Q6UAS0	Klebsiella_phage	1.8e-36	59.0
WP_032408957.1\|40485_40920_+\|terminase	P27 family phage terminase small subunit	Q6UAY1	Klebsiella_phage	2.4e-73	95.8
WP_032413534.1\|40954_42664_+\|terminase	terminase large subunit	Q6UAY0	Klebsiella_phage	0.0e+00	95.3
WP_032413533.1\|42836_44096_+\|portal	phage portal protein	Q6UAX8	Klebsiella_phage	8.9e-222	89.5
WP_032413532.1\|44132_45053_+	S49 family peptidase	Q6UAX7	Klebsiella_phage	4.3e-149	88.6
WP_032413531.1\|45130_46417_+\|capsid	phage major capsid protein	Q6UAX6	Klebsiella_phage	1.3e-204	83.9
WP_032413530.1\|46476_46764_+	hypothetical protein	Q6UAX5	Klebsiella_phage	2.5e-18	79.6
WP_020317538.1\|46744_47062_+\|head,tail	phage gp6-like head-tail connector protein	Q6UAX4	Klebsiella_phage	1.5e-45	89.8
WP_014228910.1\|47058_47397_+\|head,tail	head-tail adaptor protein	Q6UAX3	Klebsiella_phage	5.6e-54	91.1
WP_017880258.1\|47377_47767_+	hypothetical protein	Q6UAX2	Klebsiella_phage	9.6e-58	86.0
WP_169534379.1\|47772_48165_+	HK97 gp10 family phage protein	Q6UAX1	Klebsiella_phage	1.1e-61	93.8
WP_039814684.1\|48196_48658_+\|tail	major tail shaft subunit	Q6UAX0	Klebsiella_phage	1.0e-66	83.7
WP_014228914.1\|48715_49081_+\|tail	phage tail protein	Q6UAW8	Klebsiella_phage	1.6e-51	89.3
WP_057222645.1\|49313_52673_+\|tail	phage tail tape measure protein	Q6UAW7	Klebsiella_phage	0.0e+00	87.2
WP_017880254.1\|52672_53011_+\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	6.4e-58	89.3
WP_048290175.1\|53007_53763_+\|tail	phage minor tail protein L	Q6UAW5	Klebsiella_phage	1.6e-125	80.9
WP_117022629.1\|53764_54475_+	C40 family peptidase	Q6UAW4	Klebsiella_phage	3.9e-134	89.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_AP023149

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_AP023148

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_AP023150

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NZ_AP023151

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection