CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP033361	Mesorhizobium erdmanii strain NZP2014 chromosome, complete genome	2 crisprs	WYL,csa3,DinG,DEDDh,cas3,PD-DExK	0	1	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP033361_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP033361_1

3136030-3136123

Orphan

Consensus_repeat	Method
CCCAAAACCGGCGTCCACTTTTGGGCGACATGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP033361_1

>merge|NZ_CP033361|1|3136030-3136123|CRISPRCasFinder
CCCAAAACCGGCGTCCACTTTTGGGCGACATGCACTTCTTTGTTTCATGCAAGTAGTTGGCCCAAAACCGGCCTCCACTTTTGGGCGACATGCA

>NZ_CP033361|1|1|3136030-3136123|CRISPRCasFinder
CCCAAAACCGGCGTCCACTTTTGGGCGACATGCA	CTTCTTTGTTTCATGCAAGTAGTTGG
CCCAAAACCGGCCTCCACTTTTGGGCGACATGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP033361.1\|WP_064988104.1\|3149764_3155821_+\|translocation/assembly-module-TamB	unknown	unknown	gnl\|CDD\|225463
NZ_CP033361.1\|WP_027051027.1\|3157881_3158916_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
NZ_CP033361.1\|WP_064988103.1\|3147834_3149763_+\|outer-membrane-protein-assembly-factor	unknown	unknown	gnl\|CDD\|223801
NZ_CP033361.1\|WP_010910348.1\|3132758_3133208_-\|Rrf2-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224870
NZ_CP033361.1\|WP_064988106.1\|3158928_3160086_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
NZ_CP033361.1\|WP_027051011.1\|3127253_3128801_+\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP033361.1\|WP_064988095.1\|3130895_3131459_+\|gluconokinase	unknown	unknown	gnl\|CDD\|225804
NZ_CP033361.1\|WP_064988093.1\|3128797_3129778_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
NZ_CP033361.1\|WP_064988105.1\|3156072_3157731_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173868
NZ_CP033361.1\|WP_064988097.1\|3133458_3134445_-\|sulfate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|226630
NZ_CP033361.1\|WP_081293925.1\|3139160_3139892_-\|M15-family-metallopeptidase	unknown	unknown	gnl\|CDD\|350616
NZ_CP033361.1\|WP_064988096.1\|3131563_3132688_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP033361.1\|WP_064988100.1\|3137928_3138957_-\|sulfate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224529
NZ_CP033361.1\|WP_081293979.1\|3139884_3141975_-\|penicillin-binding-protein-1C	unknown	unknown	gnl\|CDD\|227289
NZ_CP033361.1\|WP_064988092.1\|3126046_3127174_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380653
NZ_CP033361.1\|WP_064988102.1\|3142073_3147554_-\|alpha-2-macroglobulin-family-protein	unknown	unknown	gnl\|CDD\|225248
NZ_CP033361.1\|WP_064988099.1\|3137000_3137852_-\|sulfate-ABC-transporter-permease-subunit-CysT	unknown	unknown	gnl\|CDD\|131194
NZ_CP033361.1\|WP_064988098.1\|3134953_3135994_-\|sulfate/molybdate-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224043
NZ_CP033361.1\|WP_171892298.1\|3134618_3134933_+\|PIN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350315
NZ_CP033361.1\|WP_155765302.1\|3129792_3130779_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|119321

Protein	Function_ID	Function_description	E-value
NZ_CP033361.1\|WP_064988104.1\|3149764_3155821_+\|translocation/assembly-module-TamB	gnl\|CDD\|225463	COG2911, COG2911, Uncharacterized protein conserved in bacteria [Function unknown].	1.63182e-152
NZ_CP033361.1\|WP_027051027.1\|3157881_3158916_+\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	4.46876e-85
NZ_CP033361.1\|WP_064988103.1\|3147834_3149763_+\|outer-membrane-protein-assembly-factor	gnl\|CDD\|223801	COG0729, COG0729, Outer membrane protein [Cell envelope biogenesis, outer membrane].	0
NZ_CP033361.1\|WP_010910348.1\|3132758_3133208_-\|Rrf2-family-transcriptional-regulator	gnl\|CDD\|224870	COG1959, COG1959, Predicted transcriptional regulator [Transcription].	3.22159e-54
NZ_CP033361.1\|WP_027051011.1\|3127253_3128801_+\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
NZ_CP033361.1\|WP_064988095.1\|3130895_3131459_+\|gluconokinase	gnl\|CDD\|225804	COG3265, GntK, Gluconate kinase [Carbohydrate transport and metabolism].	3.89407e-81
NZ_CP033361.1\|WP_064988093.1\|3128797_3129778_+\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	2.48397e-63
NZ_CP033361.1\|WP_064988105.1\|3156072_3157731_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173868	cd08503, PBP2_NikA_DppA_OppA_like_17, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	1.8046e-163
NZ_CP033361.1\|WP_064988097.1\|3133458_3134445_-\|sulfate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|226630	COG4150, CysP, ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism].	0
NZ_CP033361.1\|WP_081293925.1\|3139160_3139892_-\|M15-family-metallopeptidase	gnl\|CDD\|350616	cd14817, D-Ala-D-Ala_dipeptidase_VanX, D-Ala-D-Ala dipeptidase VanX. D-Ala-D-Ala dipeptidase (also known as D-alanyl-D-alanine dipeptidase vanX; VanX; EC 3.4.13.22) is a Zn2+-dependent enzyme that mediates resistance to the antibiotic vancomycin in Enterococci and other bacteria (both Gram-positive and Gram-negative). It is part of a gene cluster that affects cell-wall biosynthesis. The operon triggers the termination of peptidoglycan precursors by D-Ala-(R)-lactate instead of D-Ala-D-Ala dipeptides. The enzyme is stereospecific, as L-Ala-L-Ala, D-Ala-L-Ala and L-Ala-D-Ala are not substrates. It belongs in the MEROPS peptidase family M15, subfamily D.	1.91484e-95
NZ_CP033361.1\|WP_064988106.1\|3158928_3160086_+\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	6.84389e-33
NZ_CP033361.1\|WP_064988100.1\|3137928_3138957_-\|sulfate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224529	COG1613, Sbp, ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism].	0
NZ_CP033361.1\|WP_081293979.1\|3139884_3141975_-\|penicillin-binding-protein-1C	gnl\|CDD\|227289	COG4953, PbpC, Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell envelope biogenesis, outer membrane].	0
NZ_CP033361.1\|WP_064988092.1\|3126046_3127174_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|380653	cd19998, PBP1_ABC_sugar_binding-like, monosaccharide ABC transporter substrate binding protein such as CUT2. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type 1 periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.	6.94848e-141
NZ_CP033361.1\|WP_064988102.1\|3142073_3147554_-\|alpha-2-macroglobulin-family-protein	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	0
NZ_CP033361.1\|WP_064988099.1\|3137000_3137852_-\|sulfate-ABC-transporter-permease-subunit-CysT	gnl\|CDD\|131194	TIGR02139, permease_CysT, sulfate ABC transporter, permease protein CysT. This model represents CysT, one of two homologous, tandem permeases in the sulfate ABC transporter system; the other is CysW (TIGR02140). The sulfate transporter has been described in E. coli as transporting sulfate, thiosulfate, selenate, and selenite. Sulfate transporters may also transport molybdate ion if a specific molybdate transporter is not present. [Transport and binding proteins, Anions].	3.88322e-142
NZ_CP033361.1\|WP_064988098.1\|3134953_3135994_-\|sulfate/molybdate-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224043	COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism].	0
NZ_CP033361.1\|WP_171892298.1\|3134618_3134933_+\|PIN-domain-containing-protein	gnl\|CDD\|350315	cd18748, PIN_VapC4-5_FitB-like, uncharacterized subgroup of the PIN_VapC4-5_FitB-like subfamily of the PIN domain superfamily. The PIN_VapC4-5_FitB-like subfamily includes the Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of Mycobacterium tuberculosis VapC4 and VapC5 ribonuclease toxins of the VapBC toxin/antitoxin (TA) system, and Neisseria gonorrhoeae FitB toxin of the FitAB TA system. This subfamily belongs to the VapC-like family of the PIN domain nuclease superfamily. VapC is the PIN-domain ribonuclease toxin from prokaryotic VapBC toxin-antitoxin (TA) systems. VapB is a transcription factor-like protein antitoxin acting as an inhibitor. Other members of the VapC-like nuclease family include eukaryotic ribonucleases such as Smg6, ribosome assembly factor NOB1, exosome subunit Rrp44 endoribonuclease and rRNA-processing protein Fcf1. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	8.23022e-50
NZ_CP033361.1\|WP_155765302.1\|3129792_3130779_+\|ABC-transporter-permease	gnl\|CDD\|119321	cd06579, TM_PBP1_transp_AraH_like, Transmembrane subunit (TM) of Escherichia coli AraH and related proteins. E. coli AraH is the TM of a Periplasmic Binding Protein (PBP)-dependent ATP-Binding Cassette (ABC) transporter involved in the uptake of the monosaccharide arabinose. This group also contains E. coli RbsC, AlsC, and MglC, which are TMs of other monosaccharide transporters, the ribose transporter, the D-allose transporter and the galactose transporter, respectively. The D-allose transporter may also be involved in low affinity ribose transport. These transporters generally bind type 1 PBPs. PBP-dependent ABC transporters consist of a PBP, two TMs, and two cytoplasmic ABCs, and are mainly involved in importing solutes from the environment. The solute is captured by the PBP, which delivers it to a gated translocation pathway formed by the two TMs. The two ABCs bind and hydrolyze ATP and drive the transport reaction. Proteins in this subgroup have a single TM which homodimerizes to generate the transmembrane pore.	8.94034e-68

>NZ_CP033361.1|WP_064988098.1|3134953_3135994_-|sulfate/molybdate-ABC-transporter-ATP-binding-protein
MEVRVASVRKEFERFPALHDVSLDIKSGELIALLGPSGSGKTTLLRLIAGLERPTRGKIFFGDDDASQKSIQERNVGFVFQHYALFRHMTVADNIGFGPKVRHGSSRPPAQEIRRRASELLDLVQLSGLEKRYPAQLSGGQRQRVALARAMAIEPKVLLLDEPFGALDAQVRRELRRWLREIHDRTGHTTVFVTHDQEEALELADRVVVMSQGRIEQVGTADDIYDTPNSPFVYGFIGESSSLPVKVENGEIWLADRPIGLLAPHAPEGEATLYFRPHDVELLDGCSGCIAGTVAASRRVAGTRRVELEIGGERQRVEIELPVGHPAAQKSRVAFRPGRWKLFPAA
>NZ_CP033361.1|WP_171892298.1|3134618_3134933_+|PIN-domain-containing-protein
MVREGDAAVCTSIIVASELRYGCARKGSAKLRKKVEDLLAEIPVLQLDVPVDAEYGALRAELGAVGHSDLYIAAHACVLGATLVTANMGEFTRLRKLKVENWLE
>NZ_CP033361.1|WP_064988097.1|3133458_3134445_-|sulfate-ABC-transporter-substrate-binding-protein
MKRFFLATAALAGLLLASSQAWSADKLLNASYDVGRELFVQVNKAFIAGHPGVTIDQSHAGTSAQARAIAEGLGADVVTFNQVTDIDFLVKKGFVSADWQKDFADNASPFYSLPSFLVRAGNPKHIKDWNDLVRDDVQVIFPNPKTSGNARYTYLAATAYAKEAFKGDDAKVKEFITKLFNNVPIFDTGGRAATTTFVQREIGDVLITFESETRGIRKEYGDDKFEQVTPSVSLLAEFPVAIVDKVADEHGTRDLAKTYLDFLYTPEGQDILAQNGNRVRDAAVAAKYKADFPDVRLLTVEDVFGGWDKIQKEHFAAGGLLDQAYGSR
>NZ_CP033361.1|WP_010910348.1|3132758_3133208_-|Rrf2-family-transcriptional-regulator
MLTKKGKYGLKALVHLSSLPVGQLAFVNDIAVANNIPKKFLDAILGELRNAGFVQSRKGKEGGYRLARPASEIKIGHVVRVLDGPLAPIPCASRTQYQRCEDCDEATCQVRHMMLEVRQAIAEVLDNRSLAAMRDADNDDFPVELSSQI
>NZ_CP033361.1|WP_064988096.1|3131563_3132688_-|hypothetical-protein
MRLSWFAKSRKPPSAATFHTEIIADVPVPERAEDVRFFSRKLVQPGRVRRFSNQDLRESAMALFYLVVAASMPVRWWASICDRMSRLRLKRHVRKQFPAYAAATRAVLGGGLDARKLFEALLAARHRRRLQLAAHLTGFRWAPTIRLDGQEGLQAALLRGHGAIVWCDQFTSQTILGKRALHEAGVEAHQVSVNSHGVSESMFGLRFLNWPLVEVENRYLKSRIVFERDDAYQVTIRIQKILKSNGVVLMTNTIHAGSTFTEVAIGESGWTHLASAPANFAARGKAALFAMSTFETVPFREYRAVISPELLPAEAEMGRDGAKDMVLQARYILLKRDRLLEALKLFPEQMLTWSRNGRLTEASADPMTEDDPGS
>NZ_CP033361.1|WP_064988095.1|3130895_3131459_+|gluconokinase
MDEEAAQAPARVPGSVPPAIVVMGVAGCGKSAVGIALAAALGAIFIEGDRLHPPENVARMASGEPLTDQLREGWLDAIGRRIAASVGNGQSVVAACSALKRGYRERLRGFCPDIVFLYLEIDPATARERVAGRKGHFMPASLVDSQFAILEPPGTDERALTIDATRPVTDAVADATRLLARVIPGRV
>NZ_CP033361.1|WP_155765302.1|3129792_3130779_+|ABC-transporter-permease
MVGKSDGGIASRMPKFLRRADPAVLTAFACIVLLLFLGSLYSRSFLSPEYLLQQLKVASFLGVIATGMMLVILLGQIDLSVPWSVAAGAMMACAAAAYGPAGVALAIPFGILCGVLIGVVNGIGVAYLRIPSMIITLATNAVAQGLMVVYTGGFSPQDSATGAMRYVATGFAIPGVPNAVIIWALIGAAMVFVLTRTGFGRIVYGIGNRERAAYLSGIDTRRVVMIAFAASGGLSAFGGVLLAGYASKAAQSMGDAYLLPSIAAVVLGGTSILGGRGSYLGTVAGVILITLLQSILSVMQMPEAGRQIIYGVVIVAMLLLYGRAPASR
>NZ_CP033361.1|WP_064988093.1|3128797_3129778_+|ABC-transporter-permease
MKDWRYWLAEQRGTLLALGIFIVMFTIYTSNHPAGFTANVVQTAANKGVLLAFVAMAQTLVVITAGIDLSIGMIFLLTNCLASWLVVGTPMQTTLGLIAVLVVGLLCGAINGAIVIYGRLQPIVATIATGAVYYGIGLLLRPFPGGSVNEDLADALTGRVFGVVPASLVVLAAIVLVIWVPFSRSVLGRAAYAAGSSETAAYMSGVPIRRGKFAAYTLAGLLAAIGGLFLTFFTYTGDAAYASGNAYTLFSIAAVVLGGVSLFGGKGSAIGAIFGALAFRTIGDLLFVFDFDPLWQPLFQGVILLVAVSLGAFALFRVRNRLEWFL
>NZ_CP033361.1|WP_027051011.1|3127253_3128801_+|sugar-ABC-transporter-ATP-binding-protein
MDGAVPLFQMEGISKRYGGVRALEKAELSVISGSIHAVLGENGAGKSTLIKVMAGVVAPDEGRMMLDGRDVTFASPGAANKAGIVCIFQELSLIPELSVADNIVISDPPKRFGMIDRGAQRRIAEEALARAGASDIHPLALVKDLPLSRRQMVEIAKALARKPRILILDEATSALTAADVSKIFGVLKRLRSEGLALLYISHRMNEIAELADQCTVFRNGRNVASYKAGSKSDNEVVELMIGREYSHIFPPKPAAAPAGTVPVLEARKLSWADRLDNISLTVRAGEVVGLGGLDGQGQRELLLAFFGVLRGLSGEVLIDGKPVAIGSPAKARQDGIGMALIPEDRKTEGLMLPMTVRENLSFAALDRLSKGGIIDRAAEQRLIDDMVGLLAIKTAGLDIPVGALSGGNQQKVVIAKWLMRQPRIILLNDPTRGIDVGTKQEIYQLMRKLAEAGAAILFYSTDYDELIGCCDRVLVLYDGAVKRELVGAEITERALISSALNIDGKESPVGLGASA
>NZ_CP033361.1|WP_064988092.1|3126046_3127174_+|ABC-transporter-substrate-binding-protein
MIKSLVGGIVAATAFVMLNSAAMAAGPEIVKGPAAEPDCFAPWAADTQFFKFPKKAGPYRIALANGYIANTWRIQMVQTAKAYAAQKDVAAKLKEFKVVSTGEDVPAQISAINNFIDSGYDAIVVNAQNPTAFGPVIKRAKEAGVVLVAFDNILDTKDAINVNVDQKGLGALWGKWLVSHVPNGGKVLEVRGVAGTSVDTDRHNGIHEVLDASGKKWAVTEVVGKWDDGVAQKASADAIATNGPFDGVTGQGGDTGIVQAMIDAKHPFVPFGGETENGFRKFCAAHAADGLKCSSAGTGPAQVAVAIKTAIAALEGNVVPQSVKLPLAIVEDPNFKAGQDFFPDQSDNFFVGNSFPTCGINFTAQEIMGQTKADQ
>NZ_CP033361.1|WP_064988099.1|3137000_3137852_-|sulfate-ABC-transporter-permease-subunit-CysT
MTTTPAQAGWRFRQPSVIPGFGLTLGFSLAYLTLIILIPLSGLIWRSASLGWVDFWAIASDRRTINALKISFGTAFVAAAVNVVFGTLVAWVLVRYRFPGRRIVDAMVDLPFALPTAVAGIALTTLYAPNGWIGNLLMPLGIKVAYTPLGIVVALVFIGLPFVVRTVQPIMEEIDKEVEEAAATLGASRFQIITRVLFPGLAPAIITGFSLAFARGVGEYGSVIFIAGNLPYKSEIAPLLIVIRLEEYNYPAATAIAAIMLALSFVMLLVVNLVQTWSRKRYG
>NZ_CP033361.1|WP_064988100.1|3137928_3138957_-|sulfate-ABC-transporter-substrate-binding-protein
MTKPHFRKLLGALVATSVQFGTLGFAFADTTILNVSYDPTRELYKAYDEAFAAHWKAETGETVTIRQSHGGSGAQARAVIDGLDADVVTLALEGDINAIVSKSKKINPDWRKKFENNSAPYTSTIVFLVRKGNPKGIHDWSDLVKDGTQVITPNPKTSGGARWNYLAAWAYANANDGGDEAKTKEFVGKLYANAPVLDTGARGSTVTFAQKGIGDVLIGWENDAYLALDEFGADNFEIVYPPTSILAEPPVAIVDANVDARGTRKVAEAYLGWLYSKEGQTIIAKNHYRPAKPELVASADLPKTPDIKLISIDDPLFGGWKKAQPYHFGDGGIFDQIYKPAQ
>NZ_CP033361.1|WP_081293925.1|3139160_3139892_-|M15-family-metallopeptidase
MNRARQAIQRVGFCALTLATSALPAHADPLPAGFVRLADIAPSIRQDIRYAGSDNFLHRRVNGYDAPVCILTLQAAQALAGVQKTMTAKGLTLVVFDCYRPARAVADMGEWTQEGGPPDRQWYPKVRRGDLIAKGYVGELSTHSRGSTVDVAVARAGDPSVSRPACGAVDADTLDFGTGFDCFDPTSKTAHRPLGNEAAADRKLLVDAMRGAGFKNYAREWWHFTLGHEPFPSRRFDFPVSAN
>NZ_CP033361.1|WP_081293979.1|3139884_3141975_-|penicillin-binding-protein-1C
MLSRKFLRRTGIAAASLVGFAAIAVAALWELDRAFPPPLPAELTVSTEVQDRDGQLLRAFAAPDGYWRLETRLDQVDKQFVDMLVTYEDKRFWDHEGVDVLALGRAAGQLVTSGHIVSGGSTLSMQLARLIEPRESRSLGSKIKQMLRAIQIERRLSKREILERYLTLAPYGGNLEGVRAASLAYFGKEPKRLTVSEAALLVALPQLPEKRRPDRNLEIAHAARDRVLSRMVSSGLIGEREAARAALDDVSGLRRTLPALAAHAAYAMLPKAVPGQPLQLTIRKSVQEGLEKVARDAAIRLGPRLSVAMVLADSRTGDILGEVGSANFFDASRSGWIDMTKIVRSPGSTLKPFIYGLAFEQGLVAQETLIEDSPVDFGGYRPKNFDMGYQGDVSIRQALQLSLNVPAIRVLDAVGPARLTARFRQAGVNPILPINEAPGLAIGLGGVGVTLRDLVQLYTGLANGGKTHTLHDGTEPANAERTTATILNDQANWQIIDILSGVKPPEGALQRGIAYKTGTSYGYRDAWSVGFDGRYVLGVWVGRPDASAVPGLSGYVSAAPILFEGFVRSGLATVPLPGKPPGAFTPKREDLPVTLARFGAGADGLVQAAPTEPAPTIIFPPDGARVDLATNSADALPLVLKLQGGRAPFRWLANGKPLAGIDRRRTATWQPDGAGYSTLTVIDAAGRAASVKVFVE
>NZ_CP033361.1|WP_064988102.1|3142073_3147554_-|alpha-2-macroglobulin-family-protein
MTMRAARGLSILILFFFAWGTVAQAAEARRIATTDNSDYFGFDLRSDQNVTLDQCKTTCLGDPACRAFTYNTKAKWCFLKSDYNQLKPFNGAVAGKIVKIDGDPDIGAPPELAFFPNWMADQAQQYRNRLLGPAFDKPTEGMAALINSAEQAVQTGDHRSAMQKYESAVSVMPDDGKLWLNLARETLAVQPTAGTVEVSTFPMNGTSAAFNAYKLLRTTKTRADALALLGAGLDKRDLYRPALQAYEASLALVTSPAVQADYADLKARKGFRVIDHSVDADTSAPRICAQFSEDLVKTGVDYAQFVTVDNAPPKGVEAKGKQICVEGLEHGQHYDVTFRAGLPAAIGEVTAAPVVLSIYVQDRAPSARFTGDSFVLPAGARRGIPVVTVNMNAAEMKLYRIGDRSLAQLLSGYQFLHQLDGYDISNISEQMGAPVWQGQLDIVNDLNKEVTTSFPVDEALPQRKPGVYVLTAQSVNGKGDDYNSMATQWFVVSDIGLSTYTGQDGLNVFARSLGSAKPIAGAELTLVARNNEILGTATSDADGHAVFNPGLTRGDGGMVPAVLMAKQGDNDFVFLDMSKAGFDLSDRGVTGRAAPGALDVYAWTERGIYRAGEDIHVAALARDGAAKAVENLPLTFIFSRPDGVEDRRIVSDGASAGGHAVDLPLEANAMRGTWSVSIHTDPKQPAVASQMFLVEDFVPDRIEFDMKADKQEIERGETANIDIDGRFLYGAPAAGLALEGELTLSTSRDWDRFPNFSFGLADEQSAEPTVTPLTNLPVVGDDGKATFPISVDQLPSTTKLVNGKVTVRMRETGGRAIERSLNIGIRPQGHMIGIRPDFADDEVPQGGTAKFSLIAVDPAGKREALKGAQWTLVKVERNYQWYRSNNSWSYEPVTLTKSIANGQIDLSADGDATVSVPVDWGQYRLEVETSDPEGPATSYEFDAGWYVASTTTETPDGLEIALDKDNYAAGEVAKLKVSPHFAGELLINIGSDKLLKTVTATVPAGGSTVDIPVGDDWGAGAYVTATLFRPGDAQETRMPARAIGVKWLTVDPGSKKLAVTLTPPGKTTPRQQLSIPVAVAGVQPGTNAYVMVAAVDVGILNLTNYKAPDPENWFFGQRMLGMEIRDIYGRLIDGSLGTTGKLRTGGDGANMQAQGSPPTEKLVAFFSGPVQLDADGKARIDFDIPQFNGTVRVMAVAWTKEAVGHAQSDVIVRDPVVITAGLPRFLAPGDAAVMRLDVADTDGPAGDYAFSIDTTGDLSTGDKPLPQKLTLAQGKRQTLTVPLIAKTPGNASLTIKLAHADGTKVEQTLYVPVRPAQLPVTTRLVVDLKGNGGALRVDKELLAASLLDGASVSVGVSQAAAFDVPSLLMTLDRYPYGCAEQTTSRAMPLLYVNEMASGIGMESDPDLHGRIQDAIYKVLSYQSSSGSFGLWGPGSGDLWLDAYVSEFLTRAREQKYEVPALAMNQALGNLQNSLGYDQSVQDRGSEIAYALYVLARNKKASIGDLRYYADTQLEAFSSPMAVAQLAASLALYGDTQRSEATFKTALQLAKSQTDYDWYRSDYGSALRDGAAMLSLAAESKPVSTIVPELIKLVTRERAEVRWTSTQDDSWMLLAARALKEGNDSITLTVNGAPHSGGYSSQVNGSELVDSPLEIANTGKTPLQAVVTTVASPIQPLPAGGDGFTIDRTYYKLDGTEANVTEATQNERYVVVLKVTEQNSWPSRLLVTDLLPAGFEIDNPGLVSSAQLTNFFWLAQTDAAHLEFRDDRFVAAFNPADGDHDHNLTLAYVVRAVTPGTYAHPAATVEDMYRPQFSARTATGMMEIKAP
>NZ_CP033361.1|WP_064988103.1|3147834_3149763_+|outer-membrane-protein-assembly-factor
MPAHEKQMSGRNAPGRALPRALLLAVMCTSALVAESRTAAAFELFGIKLWGSSNDQDADIVDPLRYAVTLNAPDADKDLTKKLENASALKGDEDRPVSGSLGLMAKARSDREQLVAALYADARYEGVVTITIDGKPLDDLPPDAEFKGPQPIPVSINIATGPKFTLGNIRLEGDAAGLMSADYGLISGGDAGSGAVLKAEALIVRTLKEQGRPLAKVTDRQIVADHANSTLDVTLTVAAGPVAGYGATTVEGTEKVDRDFTEYMTGLKRGKQYSPQEISDARDRLLALEVFNSVTFKEADKLDADGNLPIGVQVSERKPRYFGLGGTFSNTEGLGLEGYWGHRNLFGHAEKLRIDGAISGIGSNNLSELNYNAGIMFEKPGVIGPASKFFAGVKTVLEHPDAYDHFSVKGSTGLSYELDKKQTVSAEVALDYSRITDAFGKHTYLIASVPLQYVYDNRDSRLNPTSGFRVLAYAEPSYDIMSGAAFLKLKGEGSAYQSLDTASKFVLAERVAVGSIVGTGLQNVPADRRFYSGGGGSVRGYAYQGIGPKDFNGQPIGGLSFFETSVEMRIAVTDTIGIVPFVDAGTVSTKSVPNFSDVKVGAGVGLRYVTPFGPLRIDAAVPLNRDPSDPHFGIYAGIGQAF
>NZ_CP033361.1|WP_064988104.1|3149764_3155821_+|translocation/assembly-module-TamB
MKIVWRILRIVLYTLLIVVAGVIGALVVLTKTERGRDNLAGIVSRLASNDDRKITVSGIDGIWSGNLSVDHVVLEDRQGAWLVARKVAVDWSPLALLSKSFSADRIAAERIELARLPIAGTQPPAPSGGATTLPVAIDVKQIDLPEIALGPQLAGSGIAELAAKGMLKADAAPLAVETTLAVTRHDGKQGNVDAKIHFAPGDNRLDLDLKASEPAGGIIANLLKLPDAPPVDITVSGTGPLANWNGIATFTVDGKIVTQLTGRHQLTDKGNHVEAKGDGEFAPFLPENLRPLFAGKTSFDVAGTATSAGGISIDRASIESDAIHGTATGIADPAGASDLSVQIAAKGAPVQITVGSAAQPITLAIRNATARAFGDGKAPIVDIGASLASVVAGGTQLNDLAAQIHSDGFDIQNRAGPVAVKLTAGGLKTDVATLAPLVTGKVDVDLAGSLSKDAITIDQGTMRSDALNASLTMTVALADLSMQLKMNADAVSTALPPQISSVLGDRVKFSAAATRDPQGAFAANSISLTSGSLSASGTASAQGTDIQADIKGTLGDVSVLSPMVGVPVAGGVNFSLSASGARTAPDFTVSADSDSLTASGRTVKAIKLTASGKADIASPSADVSLTGAVNDQPLDVKAALVTSEGKRSINGFLVSLGDNKVSGDLALDDKFMPLGTLTLAAPAIDQLAALAGQAVTGDINGTILFARDGEAPSVTIDAKSTSIARGEVTAKTIAVNALIANYLKAPAISGTIKADAVTAGATEISGIGVDLKRDGDWTNFTGGATIAGIPATAAGRVKIAEGTTSVEIASGEATVRGIKAAIAEASTLTIANGTTSIERLALDIGGGAVTLSGSVGQTLDLAAQFSALPAALANDFAPGLDAVGTLGGTAQVTGTPAAPQVRFDAQLAGVETSQTRQAGLGPLAVDAAGAYTLAGGVALDHATLSGEKISGKASGTINPNGASDFVLNLISSGPSLPLTVGSAASPVRIEVQSLSAKVAGESTQARLDVSAILPSVTTSPAKVDGLVLALHSDAFDLRNRAGPVSGTVSVDKVGLDNAAIAPLIAGKVTAALNARLTPNSVAIESGSLKSEALNSQVAGQVSLRDGAIDLTLSADAPSSALPAAARGMLGERARISATLKRDPNGSINVDGLKLASGGLTAQGQASLADNKVAADITGALADISPLSKDAKGAIAFALSAQGPAVAPDLSLTVNSDRLLVAEREITGLRLTATGKADAANPAANVQLTGNVAGQALQGSAVLATADGKSAINGLLLSLGKNKISGDLALDDKFVPEGTISLDLPDIGPLAALALEKAEGDVRGTIAFTRNGAAPQVAIKAATASITRGDLQAKAVSIDALIANYLAAPVISGKIRADTVTSGGTVISGINVDLKRDGDWTGFSGGATVKGIPAQAAGRVKVANGTTTIELASGQATVQGFKAAIAQASTVSIANGTTTLDRLVLNLGGGTATVTGKVGQALDINATLAKVPMSLANSFSPGLDAAGSISGTVKVTGAPASPAVAFNIDAAGVQTSQTRGAGVGAVSVSSSGTFAGKKLTFNANVSDGAGLGLKGGGTVTTAGTPALVLDFNGAVPFGILSQKLAAQGLALTGTANVNVQVRGPATSPVIGGSVSTSGARLVDARSGLAVNDLTADVSIGGGVARINRLTGTLSTRGSLSASGTVGINPAQGFPADLSIKLTDGRYTDGRVVTANLGGDLTIKGPLTSAPAIAGTVNLAKTVITVPDKLPGSLSALDVKHKNAPGAVRAQDKALRPATTSGKSGGSGLALDVTVNAPNQIFIQGRGVDAELGGSLRLTGPASSPQAVGTFTLQRGRLSILGKRLTFTDGTVGFSGSLVPYLNLTATTTTTSATVTIVVSGEATNPKFTFSSVPALPEDEVLAQLIFGRSMSNLSPLQIAQLAEAAGQLAGVGGSTSLLENLRSAIGVDDLDVTTDSQGGTAVSAGKYLNDRTYVTIQKGDKPGSGKATIDLNVGRGVKLRGEATDAGEAKGGIFYEKEY
>NZ_CP033361.1|WP_064988105.1|3156072_3157731_+|ABC-transporter-substrate-binding-protein
MTIYKSNGDSVPDHILAMAKEAKAGAVDRREFLALASVFGASTAMAYGLLGLAAPTPARAEDVKGKKGGVLKVAMSVKDPKDPRTADWSEISNAERQALEPLVKYTKEYTFAPYLLASWDINDDATEYTLHVRPGVEWNNGDKFTADDVIYNFTRWADKSAAGNSMPGRLGSLVDETTKKLRAGSVVKVDDMTVKLKLTKPDIAIIPNLCDYPGLIVHKTFDEKGANFKNCPIGTGPFELVSYDVGQKVVYKRRTTGKWWQGEAFLDGVEFIDYGTDPAATVSAFESGEVQTNHETTADYVKIIAGVGAPPSEVVTAATVVSRFNVNAKPYGDQKVRQAMALAVDNSVVLQLGYGNAGTPAENHHVAPIHPEYVELPKIKRDMAKAKQMLTEAGVIDFEHELISNDEDYHKNTTDAIAAQLREAGIKVKRTVLPSSTFWNDWTKYPFSETNWNMRPLGIQVIAIAYRTGEAWNETAYANPDFDKKVNEALGIADAEKRKVVMKDIETMLQESGIIIQPYWRKLYINIKPEVKNHSMHPTYEHDFGKVWLDQA
>NZ_CP033361.1|WP_027051027.1|3157881_3158916_+|ABC-transporter-permease
MFSFIIRRIGTILLTMLCLTLVVFFLVNLEPNLKKLAISQTEMHTSADQLESWLVNHGYRQNFFSRYGQWLGVVPKQPITDPATGKTTQRFTFCNDPTVPTFSGVLEGDFGCSTKFKTTVAAKLFPALGATGILMLCVLGVMVPVSLLVGILAGMREGSRTDRVLSVASIASTATPEYVSGVIFTVVFASWLGWLNGSAASASQGITFYNFTLPVITLAIYGIGYIARMTRASMVEVMTQQYIRTARLKGLSFRGVVVKHALRNALIAPFTVIMLQFPWLLTGVVIVEVMFRYQGFGYTLVEAAGNNDIDLLLGCSLVSVFIVLITQLISDVGYAFLNPRIRVQ
>NZ_CP033361.1|WP_064988106.1|3158928_3160086_+|ABC-transporter-permease
MQAQYIGASTIILEVLWRFWPVWVALAIVMGASFLYKKKLALYGQLFDSGVGIAGVFICLFWLFTAIFASTISPFDPLGQIPIMKDTLPGAIEPQSGLVYLFGGDKLARDVFSRMVYGSQIVLIIAPAATGFALMVGITLGLPAGYYGGKIDSILSFLANLVLAFPVILLFYLLVTPGIMDTPIPYALAGVFFLFPIIFFCVLFWTRFKNRPDRIYILLGLTLIIGGWIYLGLVFDRDPLHIVHIDPNQLNIFVAVVFASSPGVFRIVRGLVMDIKTRDYVAAAQTRGESPWYIMLWEILPNARGPLIVDACLRIGYTTILLGTLGYFGLGLAPESPDWGTAIKDASRLLRSFIHPALPPTIALMSFVLGLNLLADSLREQSMKD

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Crispr_ID: NZ_CP033361_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP033361_2

4742261-4742370

Orphan

Consensus_repeat	Method
CAATCGGCTTTCCGTCCGCTTCGCGGACCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP033361_2

>merge|NZ_CP033361|2|4742261-4742370|CRISPRCasFinder
CAATCGGCTTTCCGTCCGCTTCGCGGACCGGTTCCGGCCCTTCGCTCGCGCTCCGGGCGTTCGTCGCTCGCAAAGCCAAGCAATTGGCTTTCCGTCCGCTTCGCGGACCG

>NZ_CP033361|2|2|4742261-4742370|CRISPRCasFinder
CAATCGGCTTTCCGTCCGCTTCGCGGACCG	GTTCCGGCCCTTCGCTCGCGCTCCGGGCGTTCGTCGCTCGCAAAGCCAAG
CAATTGGCTTTCCGTCCGCTTCGCGGACCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP033361.1\|WP_064991889.1\|4749298_4749895_-\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|198314
NZ_CP033361.1\|WP_064991887.1\|4736968_4737895_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP033361.1\|WP_064991714.1\|4747301_4748066_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|236389
NZ_CP033361.1\|WP_081294299.1\|4741896_4742160_-\|DUF2934-domain-containing-protein	unknown	unknown	gnl\|CDD\|378572
NZ_CP033361.1\|WP_081294320.1\|4736162_4736612_-\|MucR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|227293
NZ_CP033361.1\|WP_027053261.1\|4738889_4739849_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182990
NZ_CP033361.1\|WP_064991711.1\|4743808_4744273_-\|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl\|CDD\|223391
NZ_CP033361.1\|WP_027053256.1\|4734044_4735922_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
NZ_CP033361.1\|WP_010915217.1\|4742451_4742874_+\|nucleoside-diphosphate-kinase	unknown	unknown	gnl\|CDD\|179085
NZ_CP033361.1\|WP_010915213.1\|4744537_4745134_-\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	unknown	unknown	gnl\|CDD\|273139
NZ_CP033361.1\|WP_064991708.1\|4740546_4741059_-\|damage-inducible-protein-DinB	unknown	unknown	gnl\|CDD\|225200
NZ_CP033361.1\|WP_064991713.1\|4745235_4747305_-\|excinuclease-ABC-subunit-UvrC	unknown	unknown	gnl\|CDD\|234792
NZ_CP033361.1\|WP_064991715.1\|4748479_4749130_+\|porin-family-protein	unknown	unknown	gnl\|CDD\|226163
NZ_CP033361.1\|WP_064991712.1\|4744278_4744536_-\|molybdopterin-converting-factor-subunit-1	unknown	unknown	gnl\|CDD\|224888
NZ_CP033361.1\|WP_064991709.1\|4741123_4741816_+\|glutathione-S-transferase-family-protein	unknown	unknown	gnl\|CDD\|198311
NZ_CP033361.1\|WP_081294300.1\|4750313_4750790_-\|histone	unknown	unknown	gnl\|CDD\|235334
NZ_CP033361.1\|WP_064991707.1\|4739878_4740505_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NZ_CP033361.1\|WP_064991706.1\|4737940_4738777_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP033361.1\|WP_064991705.1\|4736772_4736976_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP033361.1\|WP_064991710.1\|4742932_4743697_-\|YbaY-family-lipoprotein	unknown	unknown	gnl\|CDD\|225668

Protein	Function_ID	Function_description	E-value
NZ_CP033361.1\|WP_064991889.1\|4749298_4749895_-\|glutathione-S-transferase-family-protein	gnl\|CDD\|198314	cd03205, GST_C_6, C-terminal, alpha helical domain of an unknown subfamily 6 of Glutathione S-transferases. Glutathione S-transferase (GST) C-terminal domain family, unknown subfamily 6; composed of uncharacterized bacterial proteins with similarity to GSTs, including Pseudomonas fluorescens GST with a known three-dimensional structure. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GSH binds to the N-terminal domain while the hydrophobic substrate occupies a pocket in the C-terminal domain. Though the three-dimensional structure of Pseudomonas fluorescens GST has been determined, there is no information on its functional characterization.	2.72248e-39
NZ_CP033361.1\|WP_064991887.1\|4736968_4737895_-\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	5.79842e-12
NZ_CP033361.1\|WP_081294299.1\|4741896_4742160_-\|DUF2934-domain-containing-protein	gnl\|CDD\|378572	pfam11154, DUF2934, Protein of unknown function (DUF2934). This bacterial family of proteins has no known function.	7.79061e-10
NZ_CP033361.1\|WP_081294320.1\|4736162_4736612_-\|MucR-family-transcriptional-regulator	gnl\|CDD\|227293	COG4957, COG4957, Predicted transcriptional regulator [Transcription].	1.09275e-78
NZ_CP033361.1\|WP_027053261.1\|4738889_4739849_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	3.3913e-88
NZ_CP033361.1\|WP_064991711.1\|4743808_4744273_-\|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	1.38171e-58
NZ_CP033361.1\|WP_027053256.1\|4734044_4735922_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	0
NZ_CP033361.1\|WP_010915217.1\|4742451_4742874_+\|nucleoside-diphosphate-kinase	gnl\|CDD\|179085	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated.	1.72609e-86
NZ_CP033361.1\|WP_010915213.1\|4744537_4745134_-\|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase	gnl\|CDD\|273139	TIGR00560, pgsA, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. Alternate names: phosphatidylglycerophosphate synthase; glycerophosphate phosphatidyltransferase; PGP synthase. A number of related enzymes are quite similar in both sequence and catalytic activity, including Saccharamyces cerevisiae YDL142c, now known to be a cardiolipin synthase. There may be problems with incorrect transitive annotation of near homologs as authentic CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase. [Fatty acid and phospholipid metabolism, Biosynthesis].	1.64823e-43
NZ_CP033361.1\|WP_064991708.1\|4740546_4741059_-\|damage-inducible-protein-DinB	gnl\|CDD\|225200	COG2318, DinB, Uncharacterized protein conserved in bacteria [Function unknown].	2.29345e-62
NZ_CP033361.1\|WP_064991713.1\|4745235_4747305_-\|excinuclease-ABC-subunit-UvrC	gnl\|CDD\|234792	PRK00558, uvrC, excinuclease ABC subunit UvrC.	0
NZ_CP033361.1\|WP_064991715.1\|4748479_4749130_+\|porin-family-protein	gnl\|CDD\|226163	COG3637, COG3637, Opacity protein and related surface antigens [Cell envelope biogenesis, outer membrane].	5.01197e-31
NZ_CP033361.1\|WP_064991712.1\|4744278_4744536_-\|molybdopterin-converting-factor-subunit-1	gnl\|CDD\|224888	COG1977, MoaD, Molybdopterin converting factor, small subunit [Coenzyme metabolism].	3.52658e-26
NZ_CP033361.1\|WP_064991709.1\|4741123_4741816_+\|glutathione-S-transferase-family-protein	gnl\|CDD\|198311	cd03202, GST_C_etherase_LigE, C-terminal, alpha helical domain of Beta etherase LigE. Glutathione S-transferase (GST) C-terminal domain family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF. The GST fold contains an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.	6.96723e-63
NZ_CP033361.1\|WP_081294300.1\|4750313_4750790_-\|histone	gnl\|CDD\|235334	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional.	1.86893e-06
NZ_CP033361.1\|WP_064991707.1\|4739878_4740505_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	1.56691e-23
NZ_CP033361.1\|WP_064991714.1\|4747301_4748066_-\|SDR-family-oxidoreductase	gnl\|CDD\|236389	PRK09134, PRK09134, SDR family oxidoreductase.	1.15592e-144
NZ_CP033361.1\|WP_064991710.1\|4742932_4743697_-\|YbaY-family-lipoprotein	gnl\|CDD\|225668	COG3126, COG3126, Uncharacterized protein conserved in bacteria [Function unknown].	7.53341e-58

>NZ_CP033361.1|WP_081294299.1|4741896_4742160_-|DUF2934-domain-containing-protein
MTMTDDRQERIRNRAHQIWQEEGQPAGHHERHWHQAAADIEREDAGKPAKPAKKVSAAGKAKAAPKEEKPVAKASKPKTSKPKKAAK
>NZ_CP033361.1|WP_064991709.1|4741123_4741816_+|glutathione-S-transferase-family-protein
MAILLYDLVGRDESRPFSPHCWKATMALAHKGLDVSTAPTRFLEVPTIEGGASKTVPVIRDGDKVVADSFTIALYLDEAYPGRPTLFGGDGGKAMARFIERWSQLTIHPYITTAALVDLHAMQDERNAVYFRQSREQRFGKKLEDVVTARDAGLTAFRAALEPLRSMLGYQPFIGGASPLFADYIVFGALQWARVATPYQLLDDGDVVAQWFARCLDLHGGLGRKVAAAA
>NZ_CP033361.1|WP_064991708.1|4740546_4741059_-|damage-inducible-protein-DinB
MKQHFMMFAAYNQWANGRIYDAAGDLDEEEFNRDVGAFFGSLMGTLNHLLAADRIWMKRFTGEGDAPTALDAILHRGLPKLRVAREVEDRRILEWLTGLSDKALTGRFTYMTVSDMRTVSQRLAPALAHVFNHQTHHRGQAHMILTVLGRPSVTLDLAHFQRTEEGRAFA
>NZ_CP033361.1|WP_064991707.1|4739878_4740505_+|GNAT-family-N-acetyltransferase
MTAGQKIEDHRLMDIQSRQPALVGEIVELKPLHQEHSQGLLSAATDGELWNLKATVVPGPTTIDGYIATALAGRQTGTVMPYAIVLRSTGRICGSTRFWKIDRTNRKLEIGHTWLGSSVQRSGVNTEAKYLLLAHAFEVMECVRVQFTTDELNDASRAAILRIGAKQEGILRNERIMPDGRKRNSVRFSIIDSEWPDVKAMLQQKMRR
>NZ_CP033361.1|WP_027053261.1|4738889_4739849_+|LysR-family-transcriptional-regulator
MRLLSQVNLNSLKIVESAARHGNFTRAGEEQFITASAVSQRVKSLEDQLRFKIFQRGGNAVSLTPEGETYVSRVREALERIVAASMEATGQSQEHVLKISVLPTFAARWLFPRLPLFQQQHPDIVMRVSTSYATHEFTSSDFDLEIRYGDGHFNGLPADLLFREDLTPVCSRKLFHEVLGNKPVSRVTPDDLKLFTLLHSDTCTQNWQSWLGFAGASFVLSETKSIYFDSCMMSYEAANAGMGFAVANRAYMASDIRGERLVAPFAVHHPNTAGWYFVAPHKSLAARKVLLFKQWVMAEAALTQRQLDSDVRDLASEAV
>NZ_CP033361.1|WP_064991706.1|4737940_4738777_-|hypothetical-protein
MNAHTIPELRYAMSREAIIGHETAWKVSSFGVAQYLHGYDPALLAAIEEAALRLKASHAVHKHLDLTFITGADRFIPEINELLHDKLRLERLSDMMGTKLEPYPLSIVGSTVTFMNPRDGAVEWHCDGVPVTELIPLSISDPLVGGHLEIYCDDSETGRAILESGREIPRNRIMRIDHKMNYATLGQFLGVLHRTAPIRYGERVTLVLNQRSVAKPYVDDNRMFYLAADNDHDREWVDELAEDVWTNQLPAYRRFEAEHPTPAPVAETQVPGGARESW
>NZ_CP033361.1|WP_064991887.1|4736968_4737895_-|DMT-family-transporter
MVERGTRAPCRYFRLGSGSIPALVFAAGAVALWSTNALVGKSLLATHPVSQVQFLQFAGAALVFALIRFLGREAARPVAGRAAFAPLAVGFIGLVGTMVLQYVAFASMPVIEANLVAYTWPLMVAAAVIAFENPRRPGLLGLAAALGFGGVALVISGGRESNWFQGDLVGYFAAFGSALCMAFYSVVVGRLAMSPDRLLLPSSLIGVVLTFLWSAREGVAWPVGVDLALGLYLGAGPMGLGYYFWSRALKLERGGKVAVVAYLTPIASTLLLTLSGERLTATAIAGAVLVIGSCIAVGLEHSEAQDHV
>NZ_CP033361.1|WP_064991705.1|4736772_4736976_-|hypothetical-protein
MFDDNERLARQEALWLIKEFGAEAPLYAAMKAEKAIEQKDFGRCARWRRILEILADARSTKSAVSKY
>NZ_CP033361.1|WP_081294320.1|4736162_4736612_-|MucR-family-transcriptional-regulator
MSNIEDKTVIELTADIVSAYVGNNPLPASGLPDLIASVSASVRKLAGAVVVESPSLVPAVNPKKSVFPDYIICLEDGKKFKSLKRHLRTDYGLSPDDYRAKWGLPPDYPMVAPNYSATRSALAKSTGLGRKPAAPAVVAKTTKRGKATA
>NZ_CP033361.1|WP_027053256.1|4734044_4735922_-|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MLIINDLSLRMAGRLLLDHASLTLPAGTKAGLVGRNGTGKTTLFKAITGDFPSETGSINLPKNTRIGQVAQEAPGTEEPLIEIVLKADLERTALLEEEKTATDPHRIADIHMRLADIDAHSAESRAATILAGLGFDDAAQRRPASSFSGGWRMRVALAAVLFSEPDLLLLDEPTNYLDLEGTLWLENYVSKYPHTVLLISHDRDLLNRAVNSIVHLDQKKLTFWRGGYDQFERQYTEQKELQEKGRVKQEAARKHMESFVERFRAKASKARQAQSRIKALEKMKPIAAIVNDSVRPFSFPEPVKTVASPIVALNNVNVGYTEGQPILKKMTLRIDADDRIALLGANGNGKSTFAKLLSGRLKQETGTMTVAPGLKVAIFAQHQLDDLRPEENAYEHVRRLMPEAPESKVRGRVAQFGLSTEKMNTPAKDLSGGEKARLLMGLSAFEGPNLFILDEPTNHLDIDSRESLIHALNEFPGAVILISHDRHLLEATADRLWLVKDGAVNPYDGDLEDYKTLVTGVSGDRRERREADKASKADRRREAAQRRAAFEPLAKEIRATEALMDRIRKRIDGIEDELANPAIYEKDPSTATRLAKERSQLAQTLAGHEEKWLTMSAEYEEGTAE
>NZ_CP033361.1|WP_010915217.1|4742451_4742874_+|nucleoside-diphosphate-kinase
MALERTFSMIKPDATRRNLTGAITKMLEDAGLRVIASRRVWMSRREAEGFYAVHKDRPFFGELVEFMSSAPTIVQVLEGENAIARNREVMGATNPANAAEGTIRKVHALSIGENSVHGSDAPETAAQEIKYWFSDTEIVG
>NZ_CP033361.1|WP_064991710.1|4742932_4743697_-|YbaY-family-lipoprotein
MLDRLAEFFVFGLVPLVVGILAVPEQSIAAEKAVRGEVIYRERIALPPSAVLSVQLADVSLADAPARIIGEQTVKPGGQVPISFEIKFDPSVIRPQMTYALQARITVDGKLMFISDVRHQVDPLTDAPQTIMLKMVASSSEPAVSVFGQLWVVDYVDGIGAITAPQATFRVSEAGKAGGRGPCNTYFATAKVDGQAIAISDIGSTYMACAPEVMAEEKALFDALAKAASYKVEAGKLAISGKDGREILRFRAAS
>NZ_CP033361.1|WP_064991711.1|4743808_4744273_-|molybdenum-cofactor-biosynthesis-protein-MoaE
MPAALVPSVRIQRQDFDVAAEIAGLTQGRADIGAVVSFSGLCRDEQGALSALELEHYPGMAEAEIGRIATEAVRRWPLQGLTVIHRHGKIRPGENIVLVVSASAHRQAAFEAANFLMDYLKSRAPFWKKEHRVDGSVGGWVEAKEADTQAAKRW
>NZ_CP033361.1|WP_064991712.1|4744278_4744536_-|molybdopterin-converting-factor-subunit-1
MTTRLIYFAWVRERIGTSEEEVELPADIETVADLLRWLQSRGEGYEHALQYPDVIRVAINQEHVDHREKIAGAREIALFPPMTGG
>NZ_CP033361.1|WP_010915213.1|4744537_4745134_-|CDP-diacylglycerol--glycerol-3-phosphate-3-phosphatidyltransferase
MAQRAFNLPNMLTYARIIAVPLVVLCFFLEGHLKSSDFARWSALVIFLLASVTDYFDGYFARAWQQTSNIGKMLDPIADKLLVATCLLLLAADTDRHAGIAGWSLWAAIIILCREILVSGLREYLAALKVSVPVTQLAKWKTTIQMVAIAFLLAGPAGDKIFPLTTQTGLVLLWIAALVTLYTGYDYFRAGLKHIMDE
>NZ_CP033361.1|WP_064991713.1|4745235_4747305_-|excinuclease-ABC-subunit-UvrC
MSPLDHKNKARGGADDLPPEIDLEDEALEEIVEPAGPDVAFTAIDWTPHAGDAEGMVGAEVIQTLVKRLPNAPGVYRMMNAAGDVLYVGKARSLKKRVTNYAQGRFHTNRIGRMVRETSTMEFVVTRTEIEALLLEANLIKRLRPRFNVLMRDDKSFPYILLTGDHVSPGIYKHRGARSRKGDYFGPFASAGAVGRTINSLQRAFLLRSCTNSFYENRTRPCLLYQIKRCAGPCTGEISHEGYAELVAEAKDFLSGRSQKVKTEISAAMQQASQDLDFERAAIYRDRLAALSHVQSHQGINPATVDEADVFAIHQEGGQVCIQVFFFRTGQNWGNRAYFPKADPALEAAEVLGSFLAQFYDDKPTPRAILLSHGVEDQELLAEALSTRAGRKVAISVPQRGEKKDLTDNALQNAREALGRRLAETSTQGRLLAGFAETFGLAKPPVRIEVYDNSHIMGTNAVGAMVVAGPEGFVKNQYRKFNIRSTEITPGDDFGMMREVMERRFLRLLKEHGDVAVPDDAASGEASDDIEDDISGSFPAWPDVILIDGGQGQMTAVRKILSDLGIEDRVVAIGIAKGQDRDAGRERFFVRGRDSFSLPVRDPVLYFVQRLRDEVHRFAIGSHRARRKKEMVKSPLDEIAGIGPGRKRALLLAFGTAKAVSRAAVEDLVKVDGISEQVAKLVYNHFHES
>NZ_CP033361.1|WP_064991714.1|4747301_4748066_-|SDR-family-oxidoreductase
MSKATAAALVTGGAKRIGKAIVEDLASHGFAVAIHANRSRGEADALAAEVNQSGGRAAVVSADLTDMDAVSDLIGQAEAALGPISLLVNNASLFVDDSVEDFDWQAWDRHFAIHVKTPALLARNFADALPEGRDGLIVNIIDQRVWRPTPRYFSYALSKSALWTQTQMLAQALGPCIRVNAIGPGPTLKNVRQDDSDFDAQVAGLILKRGPELPEFGATIRYLWQARSVTGQMIALDGGQHLAWQTPDVTGMTE
>NZ_CP033361.1|WP_064991715.1|4748479_4749130_+|porin-family-protein
MQANLKFARPLAVALGLFALGGTAYAADVVQEEPPAPAPVAELPVASWAGPYAGLNVGYGFSGHSNAKDIGVNVGTKGFVGSVFGGYQWQQENFVYGGEAELGYNGVKGDNAGIDSKAGFEGSLRARLGYAVTPEILLYGTGGLAGRSLKIDDGVSSDRATMVGWTAGLGTDIKLTDNVFGRVEYRYTDFGSKSFDNVGKVKATDNRVTFGVGMKF
>NZ_CP033361.1|WP_064991889.1|4749298_4749895_-|glutathione-S-transferase-family-protein
MPKLLYASTSPYSSKVRMAAAYAGIAIDLVPVKTEDKPAELTGANPLGKIPVLVLDDGRSVHDSRAITQHLNRISKSALFPRNPDKRLEAEVLEALADGICDCALSMVYERRTRPEEMVYQPWLDRQWTKITAALDLLNANPPKLPKKITAGQIALRACLGYLSLRFAGKWEKGRGRLTRWAARFDEKFPELTSAIPA
>NZ_CP033361.1|WP_081294300.1|4750313_4750790_-|histone
MAKQSSKAPASKAPAKKAPAKAVAAKAATAVKKAAPAKAAAKPAAKAAPAKKPAAAKAVAKPAVKKAAPAKAAAKPAAKAAPAKKPAAKAAAKPAAKKAAPAKAAAKPAAKAAAKPAAKAAAKPAMKAAAAATKPAVKKAAAPKAKAAPAKAKAPAKK

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP033361_1	1.1\|3136064\|26\|NZ_CP033361\|CRISPRCasFinder	3136064-3136089	26	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	280709-280734	5	0.808
NZ_CP033361_1	1.1\|3136064\|26\|NZ_CP033361\|CRISPRCasFinder	3136064-3136089	26	NZ_CP050093	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b5, complete sequence	482654-482679	5	0.808
NZ_CP033361_1	1.1\|3136064\|26\|NZ_CP033361\|CRISPRCasFinder	3136064-3136089	26	NC_008384	Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11, complete sequence	641468-641493	5	0.808
NZ_CP033361_1	1.1\|3136064\|26\|NZ_CP033361\|CRISPRCasFinder	3136064-3136089	26	NZ_CP054023	Rhizobium sp. JKLM12A2 plasmid pPR12A202, complete sequence	224557-224582	5	0.808
NZ_CP033361_1	1.1\|3136064\|26\|NZ_CP033361\|CRISPRCasFinder	3136064-3136089	26	NZ_CP054033	Rhizobium sp. JKLM13E plasmid pPR13E02, complete sequence	383188-383213	5	0.808
NZ_CP033361_1	1.1\|3136064\|26\|NZ_CP033361\|CRISPRCasFinder	3136064-3136089	26	NZ_CP018230	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed2, complete sequence	440251-440276	5	0.808
NZ_CP033361_1	1.1\|3136064\|26\|NZ_CP033361\|CRISPRCasFinder	3136064-3136089	26	MH133207	Acinetobacter phage vB_AbaM_B9, complete genome	9024-9049	6	0.769

1. spacer 1.1|3136064|26|NZ_CP033361|CRISPRCasFinder matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 5, identity: 0.808

cttctttgtttcatgcaagtagttgg	CRISPR spacer
tttctttgtttcatgtaagtagtata	Protospacer
.**************.*******  .

2. spacer 1.1|3136064|26|NZ_CP033361|CRISPRCasFinder matches to NZ_CP050093 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b5, complete sequence) position: , mismatch: 5, identity: 0.808

cttctttgtttcatgcaagtagttgg	CRISPR spacer
gctctttgtttcatgcatgtcgttga	Protospacer
 .*************** ** ****.

3. spacer 1.1|3136064|26|NZ_CP033361|CRISPRCasFinder matches to NC_008384 (Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11, complete sequence) position: , mismatch: 5, identity: 0.808

cttctttgtttcatgcaagtagttgg	CRISPR spacer
gctctttgtttcatgcatgtcgttga	Protospacer
 .*************** ** ****.

4. spacer 1.1|3136064|26|NZ_CP033361|CRISPRCasFinder matches to NZ_CP054023 (Rhizobium sp. JKLM12A2 plasmid pPR12A202, complete sequence) position: , mismatch: 5, identity: 0.808

cttctttgtttcatgcaagtagttgg	CRISPR spacer
gctctttgtttcatgcatgtcgttgc	Protospacer
 .*************** ** ****

5. spacer 1.1|3136064|26|NZ_CP033361|CRISPRCasFinder matches to NZ_CP054033 (Rhizobium sp. JKLM13E plasmid pPR13E02, complete sequence) position: , mismatch: 5, identity: 0.808

cttctttgtttcatgcaagtagttgg	CRISPR spacer
gctctttgtttcatgcatgtcgttgc	Protospacer
 .*************** ** ****

6. spacer 1.1|3136064|26|NZ_CP033361|CRISPRCasFinder matches to NZ_CP018230 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.808

cttctttgtttcatgcaagtagttgg	CRISPR spacer
gctctttgtttcatgcatgtcgttga	Protospacer
 .*************** ** ****.

7. spacer 1.1|3136064|26|NZ_CP033361|CRISPRCasFinder matches to MH133207 (Acinetobacter phage vB_AbaM_B9, complete genome) position: , mismatch: 6, identity: 0.769

cttctttgtttcatgcaagtagttgg	CRISPR spacer
attctttgtttcatgcaagtacactt	Protospacer
 ********************  .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3647766 : 3656012

uncultured_Mediterranean_phage(85.71%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_051355291.1\|3647766_3648567_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	6.8e-34	34.3
WP_064988438.1\|3648563_3649331_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	6.3e-37	46.8
WP_010909892.1\|3649511_3649733_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	5.1e-08	65.9
WP_064988439.1\|3649764_3650523_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_027052142.1\|3650519_3651395_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	7.4e-50	46.3
WP_064988440.1\|3651587_3652892_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.6e-99	57.0
WP_027052140.1\|3652891_3653650_+	5'/3'-nucleotidase SurE	NA	NA	NA	NA
WP_027052139.1\|3653663_3654317_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	6.6e-19	39.8
WP_064988441.1\|3654482_3656012_+	peptidoglycan DD-metalloendopeptidase family protein	A0A2K9VGT1	Pontimonas_phage	1.6e-10	37.4

DBSCAN-SWA_2

6170207 : 6301031

Klosneuvirus(13.33%)

tRNA,transposase,integrase

attL 6208843:6208902|attR 6256959:6256976

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_064987253.1\|6170207_6170963_-\|transposase	ISAzo13 family transposase	NA	NA	NA	NA
WP_171892273.1\|6171886_6173170_+	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_064987154.1\|6175102_6175903_-	gamma-glutamyl-gamma-aminobutyrate hydrolase family protein	NA	NA	NA	NA
WP_155765409.1\|6176118_6176460_-	hypothetical protein	NA	NA	NA	NA
WP_064987156.1\|6176930_6178391_+	amidase	NA	NA	NA	NA
WP_064987157.1\|6179016_6180189_-	amidohydrolase	NA	NA	NA	NA
WP_155765410.1\|6182341_6182506_+	hypothetical protein	NA	NA	NA	NA
WP_064987159.1\|6183259_6184255_-	aldo/keto reductase	NA	NA	NA	NA
WP_064987174.1\|6184790_6186185_-	MmgE/PrpD family protein	NA	NA	NA	NA
WP_155765411.1\|6186222_6186963_-	hypothetical protein	NA	NA	NA	NA
WP_155765413.1\|6188037_6188154_+	aminopeptidase P family N-terminal domain-containing protein	NA	NA	NA	NA
WP_064987162.1\|6189549_6190497_-\|transposase	IS110 family transposase	Q75QL1	Wolbachia_phage	5.3e-25	32.0
WP_081288638.1\|6190711_6191524_+	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_081288640.1\|6191771_6192158_-	serine hydrolase	NA	NA	NA	NA
WP_064987164.1\|6192096_6192906_-	serine hydrolase	NA	NA	NA	NA
WP_064987165.1\|6193002_6194049_-	ABC transporter ATP-binding protein	F2Y302	Organic_Lake_phycodnavirus	4.2e-07	28.1
WP_064987166.1\|6194045_6195065_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.9e-21	32.6
WP_064987175.1\|6195061_6195913_-	ABC transporter permease	NA	NA	NA	NA
WP_081288644.1\|6195956_6196820_-	ABC transporter permease	NA	NA	NA	NA
WP_064987177.1\|6197791_6199447_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	9.2e-17	30.0
WP_064987168.1\|6199446_6200271_-	ABC transporter permease	NA	NA	NA	NA
WP_064987169.1\|6200281_6201241_-	ABC transporter permease	NA	NA	NA	NA
WP_064987170.1\|6201252_6202839_-	twin-arginine translocation signal domain-containing protein	NA	NA	NA	NA
WP_064987171.1\|6203418_6204849_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_064987172.1\|6204992_6206582_-	GMC family oxidoreductase N-terminal domain-containing protein	A0A1V0SI18	Klosneuvirus	1.6e-50	28.4
WP_064987173.1\|6206766_6208350_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
6208843:6208902	attL	NA	NA	NA	NA
WP_064987257.1\|6208922_6210014_+\|transposase	IS5 family transposase	NA	NA	NA	NA
6208843:6208902	attL	NA	NA	NA	NA
WP_064987258.1\|6210015_6210360_+	hypothetical protein	NA	NA	NA	NA
WP_064987211.1\|6210409_6211804_-	MmgE/PrpD family protein	NA	NA	NA	NA
WP_064987209.1\|6212776_6214366_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_081288651.1\|6214718_6215531_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_064987207.1\|6216021_6217416_-	MmgE/PrpD family protein	NA	NA	NA	NA
WP_064987206.1\|6217472_6218867_-	MmgE/PrpD family protein	NA	NA	NA	NA
WP_023671628.1\|6219387_6219849_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_064987215.1\|6220094_6221294_+	aminotransferase class V-fold PLP-dependent enzyme	NA	NA	NA	NA
WP_064987205.1\|6221326_6222472_+	M20 family metallopeptidase	NA	NA	NA	NA
WP_171892193.1\|6223615_6224107_+	hypothetical protein	NA	NA	NA	NA
WP_081288650.1\|6224066_6224711_-	hypothetical protein	NA	NA	NA	NA
WP_064987203.1\|6225043_6226126_-	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	3.1e-21	37.6
WP_171892274.1\|6226130_6226940_-	ABC transporter permease	NA	NA	NA	NA
WP_081288649.1\|6226962_6227787_-	hypothetical protein	NA	NA	NA	NA
WP_081288648.1\|6227857_6228991_-	extracellular solute-binding protein	NA	NA	NA	NA
WP_155765406.1\|6229576_6231055_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.3e-102	43.7
WP_064987200.1\|6231803_6233003_-\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_064987199.1\|6233014_6233896_-\|integrase	tyrosine-type recombinase/integrase	S5W9T9	Leptospira_phage	4.6e-31	33.0
WP_064987198.1\|6234152_6235160_-\|integrase	site-specific integrase	A0A142F2H8	Mycobacterium_phage	1.5e-09	30.9
WP_081288646.1\|6236084_6237323_-\|integrase	site-specific integrase	A0A1P8DJP1	Virus_Rctr41k	4.6e-05	29.4
WP_064987196.1\|6237425_6237581_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_064987195.1\|6237577_6238024_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_081288652.1\|6238376_6239492_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_064987193.1\|6239786_6242261_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_064987192.1\|6243168_6244350_-	M24 family metallopeptidase	NA	NA	NA	NA
WP_155765407.1\|6246191_6247571_-\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_064987257.1\|6247794_6248886_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_064987258.1\|6248887_6249232_+	hypothetical protein	NA	NA	NA	NA
6247715:6248887	attR	NA	NA	NA	NA
WP_155765407.1\|6249254_6250634_-\|transposase	IS701 family transposase	NA	NA	NA	NA
6247715:6248887	attR	NA	NA	NA	NA
WP_064987244.1\|6251161_6252565_+	aspartate aminotransferase family protein	NA	NA	NA	NA
WP_081288659.1\|6252948_6254019_+	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_064987243.1\|6254170_6255349_+	M24 family metallopeptidase	NA	NA	NA	NA
WP_155765414.1\|6255389_6256532_+	amidohydrolase	NA	NA	NA	NA
WP_064987241.1\|6256656_6257940_+	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_064987240.1\|6259252_6260422_-	aminopeptidase P family protein	NA	NA	NA	NA
WP_064987239.1\|6260486_6262265_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_081288657.1\|6262284_6263343_-	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	1.2e-22	56.5
WP_064987237.1\|6263472_6264579_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_155765407.1\|6264820_6266200_-\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_064987258.1\|6266363_6266708_-	hypothetical protein	NA	NA	NA	NA
WP_064987257.1\|6266709_6267801_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_064990667.1\|6268474_6268891_-	SET domain-containing protein-lysine N-methyltransferase	NA	NA	NA	NA
WP_081288629.1\|6269307_6270006_+	hypothetical protein	NA	NA	NA	NA
WP_064987140.1\|6270305_6272000_+	GMC family oxidoreductase N-terminal domain-containing protein	A0A1V0SI18	Klosneuvirus	2.7e-40	27.3
WP_081288628.1\|6272605_6273022_-	DUF2267 domain-containing protein	NA	NA	NA	NA
WP_064987138.1\|6273332_6274262_-	isopenicillin N synthase family oxygenase	NA	NA	NA	NA
WP_081288632.1\|6275788_6276634_-	LuxR family transcriptional regulator	A0A1I9KF49	Aeromonas_phage	3.3e-18	28.1
WP_064987136.1\|6277703_6278546_-	hypothetical protein	NA	NA	NA	NA
WP_064987135.1\|6278535_6279795_-	diaminobutyrate--2-oxoglutarate transaminase	NA	NA	NA	NA
WP_064990666.1\|6280413_6280716_+	hypothetical protein	NA	NA	NA	NA
WP_064987134.1\|6280780_6281101_+	iron-sulfur cluster assembly accessory protein	NA	NA	NA	NA
WP_064987133.1\|6281128_6281590_+	iron-sulfur cluster assembly scaffold protein	A0A218MKD1	uncultured_virus	8.0e-11	43.6
WP_064987131.1\|6281826_6282459_+	7-carboxy-7-deazaguanine synthase	NA	NA	NA	NA
WP_064987130.1\|6282455_6282809_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
WP_064987129.1\|6282813_6283551_+	7-cyano-7-deazaguanine synthase QueC	M1PKZ7	Cellulophaga_phage	1.7e-42	42.0
WP_064987128.1\|6283915_6284191_+	hypothetical protein	NA	NA	NA	NA
WP_064987127.1\|6285821_6286121_-	XRE family transcriptional regulator	NA	NA	NA	NA
WP_065005741.1\|6287035_6287224_+	hypothetical protein	NA	NA	NA	NA
WP_064987150.1\|6287922_6288936_-	1-aminocyclopropane-1-carboxylate deaminase	NA	NA	NA	NA
WP_027047789.1\|6289336_6290293_-	S8/S53 family peptidase	NA	NA	NA	NA
WP_064987149.1\|6290355_6290919_-	hypothetical protein	NA	NA	NA	NA
WP_027047788.1\|6292507_6292699_-	hypothetical protein	NA	NA	NA	NA
WP_080643871.1\|6293899_6294784_+	hypothetical protein	NA	NA	NA	NA
WP_155249162.1\|6295486_6295846_+	hypothetical protein	NA	NA	NA	NA
WP_155765398.1\|6296303_6296426_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_064987124.1\|6296545_6296869_-	exopolysaccharide repressor protein	NA	NA	NA	NA
WP_064987123.1\|6296907_6297225_-	ferredoxin III, nif-specific	NA	NA	NA	NA
WP_019863342.1\|6297221_6297425_-	hypothetical protein	NA	NA	NA	NA
WP_064987120.1\|6299030_6301031_-\|tRNA	class I tRNA ligase family protein	NA	NA	NA	NA

DBSCAN-SWA_3

6394401 : 6450632

Acidithiobacillus_phage(22.22%)

transposase,integrase

attL 6405345:6405360|attR 6452412:6452427

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_027047176.1\|6394401_6395742_-\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_064987218.1\|6395965_6396703_-	3-oxoacyl-[acyl-carrier-protein] reductase	NA	NA	NA	NA
WP_064987219.1\|6397023_6398232_-	beta-ketoacyl-[acyl-carrier-protein] synthase family protein	NA	NA	NA	NA
WP_064987220.1\|6398233_6398497_-	acyl carrier protein	NA	NA	NA	NA
WP_081288653.1\|6400962_6401412_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_081288654.1\|6403433_6403778_+	hypothetical protein	NA	NA	NA	NA
WP_081288655.1\|6403859_6404159_+	hypothetical protein	NA	NA	NA	NA
WP_027047762.1\|6404990_6405452_-\|transposase	transposase	NA	NA	NA	NA
6405345:6405360	attL	NA	NA	NA	NA
WP_064987225.1\|6406285_6407371_-	cytochrome-c peroxidase	NA	NA	NA	NA
WP_019863239.1\|6408064_6408421_+	hypothetical protein	NA	NA	NA	NA
WP_141700889.1\|6409046_6409220_+	Lar family restriction alleviation protein	NA	NA	NA	NA
WP_064987226.1\|6409715_6411131_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	5.2e-53	29.6
WP_064987227.1\|6411130_6412564_-	phosphomannomutase	NA	NA	NA	NA
WP_155765405.1\|6414585_6416094_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	1.7e-118	44.6
WP_064987230.1\|6416116_6416869_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	9.8e-59	48.4
WP_064987232.1\|6419828_6420455_-	calcium-binding protein	NA	NA	NA	NA
WP_064987235.1\|6420503_6421805_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
WP_064987236.1\|6421818_6423537_-	type I secretion system permease/ATPase	W8CYL7	Bacillus_phage	1.1e-17	22.8
WP_064990661.1\|6423828_6424677_-	hemolysin expression modulating protein	NA	NA	NA	NA
WP_155765404.1\|6427517_6428660_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_019863218.1\|6429334_6430033_+	7-cyano-7-deazaguanine synthase QueC	A0A2P1JXV3	Rhodococcus_phage	7.0e-51	48.9
WP_019863217.1\|6430032_6430389_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA
WP_064987262.1\|6430385_6431111_+	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	5.8e-32	33.3
WP_064987276.1\|6431613_6433449_+	phosphomethylpyrimidine synthase ThiC	NA	NA	NA	NA
WP_064987263.1\|6433445_6434447_+	glycine oxidase ThiO	NA	NA	NA	NA
WP_064987264.1\|6434415_6434613_+	sulfur carrier protein ThiS	NA	NA	NA	NA
WP_064987265.1\|6434614_6435388_+	thiazole synthase	NA	NA	NA	NA
WP_064987266.1\|6435384_6435990_+	thiamine phosphate synthase	NA	NA	NA	NA
WP_064987267.1\|6435980_6436751_+	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_080643865.1\|6437009_6438038_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_027047754.1\|6438164_6439274_-	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	2.5e-18	24.4
WP_019863204.1\|6442595_6442808_-	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	5.6e-12	49.2
WP_155765386.1\|6443232_6443613_-	hypothetical protein	NA	NA	NA	NA
WP_081288661.1\|6443955_6444345_-\|transposase	transposase	NA	NA	NA	NA
WP_064987272.1\|6445441_6447112_-	nodulation protein NodU	Q58MH7	Prochlorococcus_phage	2.9e-26	33.3
WP_064990758.1\|6448922_6450632_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
6452412:6452427	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP033361

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection