CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP033364	Mesorhizobium sp. NZP2234 chromosome, complete genome	3 crisprs	csa3,DEDDh,WYL,PD-DExK,cas3,DinG	0	2	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP033364_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP033364_1

386827-386918

Orphan

Consensus_repeat	Method
CGCCAGACCTGTCGCAACCGCCGAGCTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP033364_1

>merge|NZ_CP033364|1|386827-386918|CRISPRCasFinder
CGCCAGACCTGTCGCAACCGCCGAGCTTCGGCGATGCGCCGCCGGCCAAGCCGGCGACACCGGCGCCAGACCTCTCGCAACCGCCGAGCTTC

>NZ_CP033364|1|1|386827-386918|CRISPRCasFinder
CGCCAGACCTGTCGCAACCGCCGAGCTTC	GGCGATGCGCCGCCGGCCAAGCCGGCGACACCGG
CGCCAGACCTCTCGCAACCGCCGAGCTTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP033364.1\|WP_056569216.1\|384552_385137_+\|TRAP-transporter-small-permease-subunit	unknown	unknown	gnl\|CDD\|227011
NZ_CP033364.1\|WP_081294943.1\|382153_382687_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP033364.1\|WP_019862764.1\|374823_374973_-\|DUF3096-domain-containing-protein	unknown	unknown	gnl\|CDD\|371454
NZ_CP033364.1\|WP_056570333.1\|394835_395243_-\|DUF2000-family-protein	unknown	unknown	gnl\|CDD\|227290
NZ_CP033364.1\|WP_056569237.1\|373050_374331_-\|Re/Si-specific-NAD(P)(+)-transhydrogenase-subunit-alpha	unknown	unknown	gnl\|CDD\|240629
NZ_CP033364.1\|WP_056569231.1\|375135_375906_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP033364.1\|WP_056569210.1\|386937_387966_+\|zinc-dependent-alcohol-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|176196
NZ_CP033364.1\|WP_172371134.1\|395249_396167_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|367029
NZ_CP033364.1\|WP_056570335.1\|393752_394637_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
NZ_CP033364.1\|WP_172371132.1\|376052_378368_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|227334
NZ_CP033364.1\|WP_056570341.1\|378459_381939_-\|indolepyruvate-ferredoxin-oxidoreductase-family-protein	unknown	unknown	gnl\|CDD\|236404
NZ_CP033364.1\|WP_056569204.1\|390413_391085_-\|porin-family-protein	unknown	unknown	gnl\|CDD\|226163
NZ_CP033364.1\|WP_056569207.1\|388232_389339_-\|TRAP-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|227009
NZ_CP033364.1\|WP_056569219.1\|383439_384345_+\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223633
NZ_CP033364.1\|WP_056569234.1\|374418_374643_-\|aa3-type-cytochrome-c-oxidase-subunit-IV	unknown	unknown	gnl\|CDD\|369548
NZ_CP033364.1\|WP_056570337.1\|391201_391588_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP033364.1\|WP_056569202.1\|391671_392655_-\|2-hydroxyacid-dehydrogenase	unknown	unknown	gnl\|CDD\|240633
NZ_CP033364.1\|WP_172374962.1\|392651_393674_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_CP033364.1\|WP_056569222.1\|382679_383291_-\|CGNR-zinc-finger-domain-containing-protein	unknown	unknown	gnl\|CDD\|227803
NZ_CP033364.1\|WP_056570339.1\|389603_390377_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|224982

Protein	Function_ID	Function_description	E-value
NZ_CP033364.1\|WP_056569216.1\|384552_385137_+\|TRAP-transporter-small-permease-subunit	gnl\|CDD\|227011	COG4665, FcbT2, TRAP-type mannitol/chloroaromatic compound transport system, small permease component [Secondary metabolites biosynthesis, transport, and catabolism].	5.85267e-94
NZ_CP033364.1\|WP_056570341.1\|378459_381939_-\|indolepyruvate-ferredoxin-oxidoreductase-family-protein	gnl\|CDD\|236404	PRK09193, PRK09193, indolepyruvate ferredoxin oxidoreductase; Validated.	0
NZ_CP033364.1\|WP_019862764.1\|374823_374973_-\|DUF3096-domain-containing-protein	gnl\|CDD\|371454	pfam11295, DUF3096, Protein of unknown function (DUF3096). This family of proteins with unknown function appears to be restricted to Proteobacteria.	0.00134847
NZ_CP033364.1\|WP_056570333.1\|394835_395243_-\|DUF2000-family-protein	gnl\|CDD\|227290	COG4954, COG4954, Uncharacterized protein conserved in bacteria [Function unknown].	3.5198e-87
NZ_CP033364.1\|WP_056569237.1\|373050_374331_-\|Re/Si-specific-NAD(P)(+)-transhydrogenase-subunit-alpha	gnl\|CDD\|240629	cd05304, Rubrum_tdh, Rubrum transdehydrogenase NAD-binding and catalytic domains. Transhydrogenases found in bacterial and inner mitochondrial membranes link NAD(P)(H)-dependent redox reactions to proton translocation. The energy of the proton electrochemical gradient (delta-p), generated by the respiratory electron transport chain, is consumed by transhydrogenase in NAD(P)+ reduction. Transhydrogenase is likely involved in the regulation of the citric acid cycle. Rubrum transhydrogenase has 3 components, dI, dII, and dIII. dII spans the membrane while dI and dIII protrude on the cytoplasmic/matrix side. DI contains 2 domains in Rossmann-like folds, linked by a long alpha helix, and contains a NAD binding site. Two dI polypeptides (represented in this sub-family) spontaneously form a heterotrimer with dIII in the absence of dII. In the heterotrimer, both dI chains may bind NAD, but only one is well-ordered. dIII also binds a well-ordered NADP, but in a different orientation than a classical Rossmann domain.	0
NZ_CP033364.1\|WP_056569210.1\|386937_387966_+\|zinc-dependent-alcohol-dehydrogenase-family-protein	gnl\|CDD\|176196	cd08234, threonine_DH_like, L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.	3.67817e-165
NZ_CP033364.1\|WP_172371134.1\|395249_396167_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|367029	pfam02311, AraC_binding, AraC-like ligand binding domain. This family represents the arabinose-binding and dimerization domain of the bacterial gene regulatory protein AraC. The domain is found in conjunction with the helix-turn-helix (HTH) DNA-binding motif pfam00165. This domain is distantly related to the Cupin domain pfam00190.	9.83586e-26
NZ_CP033364.1\|WP_056570335.1\|393752_394637_-\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	4.03393e-16
NZ_CP033364.1\|WP_172371132.1\|376052_378368_-\|EAL-domain-containing-protein	gnl\|CDD\|227334	COG5001, COG5001, Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain [Signal transduction mechanisms].	1.9929e-117
NZ_CP033364.1\|WP_056569204.1\|390413_391085_-\|porin-family-protein	gnl\|CDD\|226163	COG3637, COG3637, Opacity protein and related surface antigens [Cell envelope biogenesis, outer membrane].	2.85305e-38
NZ_CP033364.1\|WP_056569207.1\|388232_389339_-\|TRAP-transporter-substrate-binding-protein	gnl\|CDD\|227009	COG4663, FcbT1, TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component [Secondary metabolites biosynthesis, transport, and catabolism].	0
NZ_CP033364.1\|WP_056569219.1\|383439_384345_+\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|223633	COG0559, LivH, Branched-chain amino acid ABC-type transport system, permease components [Amino acid transport and metabolism].	8.09445e-60
NZ_CP033364.1\|WP_056569234.1\|374418_374643_-\|aa3-type-cytochrome-c-oxidase-subunit-IV	gnl\|CDD\|369548	pfam07835, COX4_pro_2, Bacterial aa3 type cytochrome c oxidase subunit IV. Bacterial cytochrome c oxidase is found bound to the to the cell membrane, where it is involved in the generation of the transmembrane proton electrochemical gradient. It is composed of four subunits. Subunit IV consists of one transmembrane helix that does not interact directly with the other subunits, but maintains its position by indirect contacts via phospholipid molecules found in the structure. The function of subunit IV is as yet unknown.	4.79308e-08
NZ_CP033364.1\|WP_056569202.1\|391671_392655_-\|2-hydroxyacid-dehydrogenase	gnl\|CDD\|240633	cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase. Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric.	6.52713e-144
NZ_CP033364.1\|WP_172374962.1\|392651_393674_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	6.83105e-113
NZ_CP033364.1\|WP_056569222.1\|382679_383291_-\|CGNR-zinc-finger-domain-containing-protein	gnl\|CDD\|227803	COG5516, COG5516, Conserved protein containing a Zn-ribbon-like motif, possibly RNA-binding [General function prediction only].	1.50245e-78
NZ_CP033364.1\|WP_056570339.1\|389603_390377_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	gnl\|CDD\|224982	COG2071, COG2071, Predicted glutamine amidotransferases [General function prediction only].	1.95118e-114

>NZ_CP033364.1|WP_056569216.1|384552_385137_+|TRAP-transporter-small-permease-subunit
MEGPLALSRGIDRLNEFIGKSVSWLILLAILVSAANAVIRKMFDTSSNAWLELQWYLFGAAFMLAAAYTLKQNEHIRIDIVYGLFSRRVQHWIDLLGHILFLMPFVTLMVVYFVPYVSLSFHSGEMSTNAGGLIVWPAKAILLVGFFLLALQGISEIIKKIAIMRGVMDDPNPFISVHEQAELEAKALADEVRS
>NZ_CP033364.1|WP_056569219.1|383439_384345_+|branched-chain-amino-acid-ABC-transporter-permease
MLYFFQQVLNGLHSGALYALLAFGYVLTNGILHRTNLAYGALFAFCGQAMILSVAFGYQVLWLTLLASVLFGVVAAFLYAALISHVLSRSIFEPLADRSPNAIVVTTLGILLVLSEASRIAADTHDLWLPPMLAQPIVFAETSGFKATLTLIQVLDCAVVLAAVALATSAFAHSNFGRCWRAVSDDPRAAALCGVDVRGVFRRAVLLGGFCAALAGVMASLYYGNVSFGSGLVYGLKILFVTAVGGYLSPPRAAVGAAAFGMAESLWAGYFPVEWRDAWMYLFLVAMLILIGAGRDTGKVV
>NZ_CP033364.1|WP_056569222.1|382679_383291_-|CGNR-zinc-finger-domain-containing-protein
MTVAWTPHRFTGGLLALDTANTVVLRGDPQRTFDRFDDQVEIARFADAASGFRAAELGDRRLAVSSPAAIAPVVLSIREATDRLFRGAVSKGALATADLPDFLRACAEGLAGSRTEIGVPGKPFGNPSTPIAFEAALAVSALSLLRDDTIARLRICPNCTWLFVDRSRNSSRLWCDMSVCGNRQKASRHYRRRRLAAHEVKDA
>NZ_CP033364.1|WP_081294943.1|382153_382687_-|hypothetical-protein
MPRGFSRALVAGAILIAAAALGGCRDTGGEGKLFEVSGKIFVFNYRLARATYVVTLRPLQPMGEGQVAVASFQNPAGGAPLVVEQKVWPKLDKVSLESPALACIVKNKPYAIAISIKGADGTVLQTIDTTLMSTEDQSILPDRPLVIDQLYTANPDLAGHPDGKLPGEPKPDCSKAG
>NZ_CP033364.1|WP_056570341.1|378459_381939_-|indolepyruvate-ferredoxin-oxidoreductase-family-protein
MTLHDVALDDKFDLGKERIFLSGAQAVIRMLLMQRERDRRAGLNTAGFVSGYRGSPLGGLDMQLWKAKKQLAGADIVFQPGLNEELAATACWGSQQTELLGEGTHDGVFSVWYGKGPGVDRSGDVFRHANLAGSSRHGGVLALMGDDHMAESSTNAHATEFLFVDTMVPILNPAGVQEIIDYGLYGFAMSRFAGTWAAIKCVKDNIESTASVDASLERLNIVLPEFDMPPGGLNIRHEIDMLGQEERLHEYKRAAASAFIHANGLNHIVYSGGRNPKLGIITLGKSYLDVRQALEDIGIDEAAANRIGVRLFKVGCPWPLDLQHIADFARGLDAIVVVEEKRSLIEVQLRENLYGTAIQPVIVGKKDERGDWLFPAKGALDPNEIAIALGERIVKTIGPSEEISARVAKLRQFQAMLADATDIGSRTPFFCSGCPHNSSTKVPDGSIAAAGIGCHFMALWMDRNTLGFTAMGGEGAQWVGQAPFSKRDHIFQNLGDGTYNHSGTLAIRFALSSGANITYKILYNDAVAMTGGQPHEGGLTVDMIARQVRAEGVDRIAIVTDEPDKYAGKAEFPAGATIHHRDDLDLVQRELRDVKGVSILLYDQTCAAEKRRRRKRGTFPDPDKRVFINELVCEGCGDCGVQSNCVSIQPVETEFGRKRKIDQSSCNKDFSCVNGFCPSFVTVHGAKIRKAEGLAGKTDPLDGVPAPAEFPLGAEGWAAIIDGVGGTGVVTVGAVLGMAAHLESKGCGMIDMAGLAQKGGSVFTHVRIARTPDDIHAIRVSAGKADLVLGCDLVVSGAKKVLTAVREGHTIFLANTAEIMPGEFARSADFSLPIERLKKAIRTAAGEDKAHFFDATRTATSLFGNSLGANMFMLGFAFQHGGLPLSAEAVEKAIELNGEAVAMNIAAFRWGRRAAHQPDFVRGLVSQQGKAGQTAPVAQTLDEIIARRVAFLTSYQNAAYGKRYADRLAQLRAAEAKAVPGSTAVTEAAARNLFKLMAIKDEYEVARLYTDGSFAAELGKQFQSYEKLEFHLAPPLMGRRGNDGKPRKSSFGPWMMKGFQLLAALKGLRGTAFDLFGYTAERRAERQLLAQYEGDLQLVAKSLAPDKADAAVALVSVPALIRGYGHVRQATAEKALGERQRLLDRLAKASARPELQAAE
>NZ_CP033364.1|WP_172371132.1|376052_378368_-|EAL-domain-containing-protein
MGKTKTDNIPVDVYIQFVRSLFDNAHMLVIGALCHATISLMVYWRHGQPIFLVLAGALLGIGVWRYFSLRRFHRSGGEIRDAADATKWEREYILKGSLQGLLLGFFCFISIYVYSDSYAEIGALSVTMASLVTVVGRNYGSPRMVMIFAVTFVGPIAAALILRFDLPYVVLGLLIIPFMFIIKGSADHVRNVLFSAVVGHKQARQIAQRFNRALNTMSHGLVMLGPDGKVVVGNAEAARLMSLKSPDQLLGRSIHSLLLRGVAGGMLAPKDCRYIEAQLTRALREGRDRKVLVSFSNGQHFEFSAREGNQELGVITFEDVTARVETEEKIRFMARYDNLTGLPNRAYFHELVGELMASGERDRLCGLAVIDLDDFKSVNDTLGHPVGDGLIYAVAERLSAIAGQGIAVSRFGGDEFMVFFDRIEDESHLASLLDQIFADLQGEVDVAGHGLRIQASAGAVLSKVEGTDVDAMIVKADLALYKAKELGKNGWRLFEAAMDAAFRNRQLMKADLRTAVESKNLRVVYQPIVAMKTMRIASCEALCRWDHPDLGPISPGIFIPLAEEMGIISEISTFVLQAACAECAKWPDQTSVSVNLSARDFRNGDVIQKVRDALASSGLAAGRLEIEVTETALLDDKSQTRQYIEELKRLGVRIALDDFGTGYSSLSYLHKLPLDKIKIDRSFVMDVTQNPRSLELLKGVVDLTRILGLTVTIEGVETFEQLKILLHSVKPDLVQGFLFGAALSASGIETMSNVTWPFAAELQPIAKRAAP
>NZ_CP033364.1|WP_056569231.1|375135_375906_-|hypothetical-protein
MENKLLGTPVAAAAGKGKNSPSVFSDHVMDVLEHVEYRLCDGAEDLEAIYRLRYNSYLHAGMVKPDASRMVKDDFDDLPNSYRFGVFFDGALVSTIRIHYASARYPVSPSTDVFGDVLARRLATGETFVDPSRFAADLEWSSSLRVLPYVTLRLAVVACSHFKPTYCLTAIKEEHSAFYHRIFRSEQAVPPRNYPGLTVPVHLFQSKCSENMQATLDRFPFFNSTAFEQRMLFQRPNRGELAPLTILPTAKYFEAA
>NZ_CP033364.1|WP_019862764.1|374823_374973_-|DUF3096-domain-containing-protein
MHISQLALTPLISLIAGVLILIMPRLLNYIVALYLIVVGLLGLFPHLAG
>NZ_CP033364.1|WP_056569234.1|374418_374643_-|aa3-type-cytochrome-c-oxidase-subunit-IV
MADHSPTGPVELGAKMDYAEHDRTYAGFLALAKYGSLFCGALLLAMAFGFFAGGFFSALILFFLIMAAGAFILR
>NZ_CP033364.1|WP_056569237.1|373050_374331_-|Re/Si-specific-NAD(P)(+)-transhydrogenase-subunit-alpha
MGQTVFIPRELDANEPRVAASPDTVKRLAGLGFDVVVETGAGTRSRIPDEEFAKAGAAIGKASDVAKADVVLKVRRPTEAELKSYKSGAAVIAIMDPYGNDAAVAALAKAGVTAFSMEFMPRITRAQSMDVLSSQANLAGYQAVIDGASEYDRALPMMMTAAGTVPAAKVFIMGVGVAGLQAIATARRLGAVVTATDVRPAAKEQVASLGAKFLAVEDDEFKAAETAGGYAKEMSKEYQAKQAALTSEHIAKQDIVITTALIPGRPAPKLVSAAMVASMKPGSVLVDLAVERGGNVEGSEPGKVVTTANNVKIVGHLNVPGRVAASASLLYAKNLFAFLETLVDKNTKTLAINRDDDLVKATMLTDGGKVVHPAFAKADQQPRVEPAAIPATTMVADASTPAAPKKAAPRKTAASKSSSPKSKGTA
>NZ_CP033364.1|WP_056569210.1|386937_387966_+|zinc-dependent-alcohol-dehydrogenase-family-protein
MKAVRLEAVGIIALREVVKPVPGPDELLVRIEACGVCGTDRHLFHGEFPCRPPVTPGHEFSGIIEAVGNGVSGFAVGDRVTGDPNIACGRCPHCHAGRVNLCRNLNAIGIHRDGGFAEYVVLPQKQAFILPADLPPTHGAFCEPLGCCLHGIDLAAIKPGSSVIVLGGGVIGLLTVQLARLAGATTIILSTRQASRRALAEELGATATVDPTAEDVIDAISGPAGLMPGGADVVLECAGVRETVEQSMRLARAGGTVVVVGVTPQGMKAEFEPFDLLFRELKVVGSFLNPYTHRRAAELIASGAIEIERLISRQVPLEEAADVIANPPAPGEVKVLVVPGLG
>NZ_CP033364.1|WP_056569207.1|388232_389339_-|TRAP-transporter-substrate-binding-protein
MDRRSFIRKAGVTGLGAAAAATLAAPAIAQSNPKVTWRLASSFPKSLDTIYGGAEVFSKMLSEATDGNFQIQVFAAGELVPGLQAADATTAGTVEACHTVAYYYWGKDPTWALGAAVPFSLNARGMNAWHYHGGGIDLFNEFLATQGLFGLPGGNTGVQMGGWFRKEINTVADLSGLKMRIGGFAGKVVQKLGVVPQQIAGGDIYPALEKGTIDAAEWVGPYDDEKLGFYKVAPYYYYPGWWEGGPTVHLMFNKAKYEELSPTYKSLLHTAAQATDADMLQKYDYVNPAAVKRLVAGGAKLRPFSQEIMAACFEKANEVYAEMEASNAPFKKIWESIKGFRKEHYLWAQVAEYNYDTFMMVQQRNGKL
>NZ_CP033364.1|WP_056570339.1|389603_390377_+|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein
MQQPLVAISTDVRQFDNYTWHAAPQQYLEAAITGAGVFPLLVPSFGDRLDFDELLSSVDGVMVTGSKSNVHPSLYGGDASEANGPYDPARDATTLPLIRRAIERGVPLLAICRGIQELNVALGGTLGTEIQEREGSLDHRAPASDKQDERFAMHQTISIKPGSCLAGVFGAGDIKVNSLHRQAIDRLGSRLEIEAVATDGTVEAVSVKGARAFAVGVQWHPEYWVKSDSNSAKIFRAFGDAVRLHAAAKAGARAAAE
>NZ_CP033364.1|WP_056569204.1|390413_391085_-|porin-family-protein
MKSILLASAILAALPGSAFAADALSSGPAVYEWSGPYVGVQLGYGWGDVDSHDSQIGNGFSDWADSWSSNGVLGGIHLGYNQAYGSFVLGAEGDIEASGMSGSVDSEFAGNIKTKIDVQGSLRARLGYAMGPALLYATGGLAVAHFKTKYDDGGTTDDSSNTKAGWTVGAGLEYAFTQNWTTRVEYRYSDFGKFTDNPATDSGFLYPTEVKTQAVRVGFSYKF
>NZ_CP033364.1|WP_056570337.1|391201_391588_-|hypothetical-protein
MKALSVLIAAAALFGGVQMFQGGGESVAEEAVPSNTYKLVANGDEGACAVTRGAAISDGLSLLTVAPNCRRLLPGIERAKFWRDQNDGTVAFSANGIDPIVAFSVADGDGYESYAPTLPLLSLAVDGH
>NZ_CP033364.1|WP_056569202.1|391671_392655_-|2-hydroxyacid-dehydrogenase
MTRADQLQAVAILVPADFSDHAVRRIDRTFKQVRIERADPALVTEEMRRTVRGIASFAGISAAMMDALPNLELIASFGVGYDSVDVAHAAAKNIMVTNTPDVLTEEVADTAIGLLINTIRDLPRAENWLRDGSWVRKGNYPLSRLTLRARRVGIFGMGRIGRAIARRLEAFGLPVAYHNRLRVEGLSYQYHPTLKGLAEAVDTLISVAPGGASTQKAVNAEILSALGANGVFVNIGRGSTVDEAALAAALADGTIAAAGLDVFADEPNVPKALLDAPNTSLLPHVGSASEHTRRAMADLCVDNLVSWFTERRALTPVPETAHVKDRG
>NZ_CP033364.1|WP_172374962.1|392651_393674_-|LacI-family-DNA-binding-transcriptional-regulator
MAQKIKLSTIADALGVSTATVSLALRDSPLVAGSTRDRIKEHARAIGYIYNRRAASLRTSRSGIVGVVVHDIMNPFFAEILRSIESELDRSRQTFILSNHYDQLEKQRTFIDTLLQLGADGVIMSPAIGTPASDIVMAEENGLPAVLIARTVEGADVPVFRGDDAYGTGLATNHLISLGHKRIAMIGGTDQTSTGRDRYQGYVNAMEAAGLEVRPSWRIAGPRTKQAGFEAAGQFLALKDRPTAACCWNDLVAIGLMNGIARAGLVPGIDISVTGYDDLEEAAIATPALTTVWNGQREVGRRAASALLDKLNGQTVRPSQELIKPELHVRQSTGRPVERT
>NZ_CP033364.1|WP_056570335.1|393752_394637_-|DMT-family-transporter
MLATYVFFTFLDTSSKYLVLAGVSALIVAWVRFAVHVVLVGALLRGWRQPMRFRPVNLPAHVLRGVFLFGSTMCNILALRSLQLAETTSIYFFGPMVITALAGPLLGEWAGWRRWLAILAAFAGVLIITRPGVGVFGIGHLFALGSMLSNSFYVIMTRRMSATETSESLILFSALAPAVLLLPMLPFSFSLPHDGWHWFVLLMLGVFGGVGHWLLVQAYRLATTTALAPYPYSQMVWMIISGWIVFKQFPDRWTLVGAAIIVASGLYIVHREHRLRLRSRAASDVEAEALAKKL
>NZ_CP033364.1|WP_056570333.1|394835_395243_-|DUF2000-family-protein
MFDTKFAIVLREDLPVWQKLNVTAFLASGIVAQFPDIIGEPYRDRAGNLYNPLSIQPVIVLSADQATISAIQRRALERGATTSLYVEEMFSTGFDAANRAVFAEFAPEDAKVVGVALRADKKLVDKITKGARMHA
>NZ_CP033364.1|WP_172371134.1|395249_396167_+|AraC-family-transcriptional-regulator
MDHSRLSPHREAEGDDALELDRQAFEGLGRLCADAAENCIISASDPAGMERIEARFHGSAFDLHRHDTYAIGVTLQGVQTFRYRGAARQSLPGQIIVLHPDEMHDGGAGTEDGLRYRMLYLEPSLMLDCLGGASLPFLGEAVVSDDAFCATLLSALGPLQQELDELFVDDFLTQLMQSLARHAGQPAKPMARTAWRAAALARDYLTENVTRPVRSGELEAITGLDRYALSRHFRAAFSTSPHRFLVMRRLQRARRMIIAGEPLAQIAVEAGFTDQSHFNRQFKKAFGMTPGRWSSLIRDSAPAAA

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Crispr_ID: NZ_CP033364_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP033364_2

4552088-4552175

Orphan

Consensus_repeat	Method
GCAAAACCGGATTCCACTTTTGCTGATCGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP033364_2

>merge|NZ_CP033364|2|4552088-4552175|CRISPRCasFinder
GCAAAACCGGATTCCACTTTTGCTGATCGCGAACTCCTGGTTGCCGCGCGATCGAACGCAAAACCGGATTCCACTTTTGCTGATCGCG

>NZ_CP033364|2|2|4552088-4552175|CRISPRCasFinder
GCAAAACCGGATTCCACTTTTGCTGATCGCG	AACTCCTGGTTGCCGCGCGATCGAAC
GCAAAACCGGATTCCACTTTTGCTGATCGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP033364.1\|WP_027042409.1\|4546914_4547589_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225496
NZ_CP033364.1\|WP_056562298.1\|4552245_4553499_+\|tyrosine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235645
NZ_CP033364.1\|WP_056562293.1\|4550816_4551149_-\|lipid-A-disaccharide-synthase-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|226461
NZ_CP033364.1\|WP_056565414.1\|4557073_4557541_+\|peroxiredoxin	unknown	unknown	gnl\|CDD\|224146
NZ_CP033364.1\|WP_172373985.1\|4548279_4549101_-\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239483
NZ_CP033364.1\|WP_056562312.1\|4561407_4562646_-\|amidohydrolase	unknown	unknown	gnl\|CDD\|349882
NZ_CP033364.1\|WP_096445255.1\|4543804_4545322_-\|Fe-S-cluster-assembly-protein-SufB	unknown	unknown	gnl\|CDD\|236990
NZ_CP033364.1\|WP_172373986.1\|4549126_4550776_-\|glycosyltransferase-family-39-protein	unknown	unknown	gnl\|CDD\|224720
NZ_CP033364.1\|WP_172373983.1\|4545509_4546673_-\|cysteine-desulfurase	unknown	unknown	gnl\|CDD\|224029
NZ_CP033364.1\|WP_172373984.1\|4547610_4548261_+\|FMN-binding-negative-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225366
NZ_CP033364.1\|WP_172373982.1\|4543021_4543777_-\|Fe-S-cluster-assembly-ATPase-SufC	unknown	unknown	gnl\|CDD\|223473
NZ_CP033364.1\|WP_056562306.1\|4558711_4559707_-\|sterol-desaturase-family-protein	unknown	unknown	gnl\|CDD\|225546
NZ_CP033364.1\|WP_056562321.1\|4565192_4565957_+\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP033364.1\|WP_056562295.1\|4551141_4551876_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133022
NZ_CP033364.1\|WP_056562303.1\|4557572_4558715_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|227940
NZ_CP033364.1\|WP_172373987.1\|4553597_4556978_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372485
NZ_CP033364.1\|WP_056562318.1\|4564029_4565196_+\|ROK-family-protein	unknown	unknown	gnl\|CDD\|224851
NZ_CP033364.1\|WP_172373981.1\|4541727_4542996_-\|Fe-S-cluster-assembly-protein-SufD	unknown	unknown	gnl\|CDD\|223791
NZ_CP033364.1\|WP_056562309.1\|4560010_4561315_+\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|366703
NZ_CP033364.1\|WP_172373988.1\|4562632_4563811_-\|M24-family-metallopeptidase	unknown	unknown	gnl\|CDD\|274380

Protein	Function_ID	Function_description	E-value
NZ_CP033364.1\|WP_027042409.1\|4546914_4547589_+\|alpha/beta-hydrolase	gnl\|CDD\|225496	COG2945, COG2945, Predicted hydrolase of the alpha/beta superfamily [General function prediction only].	8.75563e-121
NZ_CP033364.1\|WP_056562298.1\|4552245_4553499_+\|tyrosine--tRNA-ligase	gnl\|CDD\|235645	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated.	0
NZ_CP033364.1\|WP_056562293.1\|4550816_4551149_-\|lipid-A-disaccharide-synthase-N-terminal-domain-containing-protein	gnl\|CDD\|226461	COG3952, COG3952, Predicted membrane protein [Function unknown].	8.80682e-50
NZ_CP033364.1\|WP_056565414.1\|4557073_4557541_+\|peroxiredoxin	gnl\|CDD\|224146	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones].	8.59515e-77
NZ_CP033364.1\|WP_172373985.1\|4548279_4549101_-\|phosphatase-PAP2-family-protein	gnl\|CDD\|239483	cd03389, PAP2_lipid_A_1_phosphatase, PAP2_like proteins, Lipid A 1-phosphatase subfamily. Lipid A 1-phosphatase, or LpxE from Francisella novicida selectively dephosphorylates lipid A at the 1-position. Lipid A is the membrane-anchor component of lipopolysaccharides (LPS), the major constituents of the outer membrane in many gram-negative bacteria.	1.06461e-61
NZ_CP033364.1\|WP_056562312.1\|4561407_4562646_-\|amidohydrolase	gnl\|CDD\|349882	cd03886, M20_Acy1, M20 Peptidase Aminoacylase 1 family. Peptidase M20 family, Aminoacylase 1 (ACY1; hippuricase; acylase I; amido acid deacylase; IAA-amino acid hydrolase; dehydropeptidase II; N-acyl-L-amino-acid amidohydrolase; EC 3.5.1.14) subfamily. ACY1 is the most abundant of the aminoacylases, a class of zinc binding homodimeric enzymes involved in the hydrolysis of N-acetylated proteins. It is encoded by the aminoacylase 1 gene (Acy1) on chromosome 3p21 that comprises 15 exons. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in the protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity; substrates include indoleacetic acid (IAA) N-conjugates of amino acids, N-acetyl-L-amino acids and aminobenzoylglutamate. ACY1 breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine). ACY1 appears to physically interact with Sphingosine kinase type 1 (SphK1) and may influence its physiological functions; SphK1 and its product sphingosine-1-phosphate have been shown to promote cell growth and inhibit apoptosis of tumor cells. Strong expression of the human gene and its mouse ortholog Acy1 in brain, liver, and kidney, suggest a role of the enzyme in amino acid metabolism of these organs. Defects in ACY1 are the cause of aminoacylase-1 deficiency (ACY1D), resulting in a metabolic disorder manifesting encephalopathy and psychomotor delay.	9.05612e-142
NZ_CP033364.1\|WP_096445255.1\|4543804_4545322_-\|Fe-S-cluster-assembly-protein-SufB	gnl\|CDD\|236990	PRK11814, PRK11814, cysteine desulfurase activator complex subunit SufB; Provisional.	0
NZ_CP033364.1\|WP_172373986.1\|4549126_4550776_-\|glycosyltransferase-family-39-protein	gnl\|CDD\|224720	COG1807, ArnT, 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family [Cell envelope biogenesis, outer membrane].	6.00984e-74
NZ_CP033364.1\|WP_172373983.1\|4545509_4546673_-\|cysteine-desulfurase	gnl\|CDD\|224029	COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism].	4.001e-144
NZ_CP033364.1\|WP_172373984.1\|4547610_4548261_+\|FMN-binding-negative-transcriptional-regulator	gnl\|CDD\|225366	COG2808, PaiB, Transcriptional regulator [Transcription].	1.48947e-103
NZ_CP033364.1\|WP_172373982.1\|4543021_4543777_-\|Fe-S-cluster-assembly-ATPase-SufC	gnl\|CDD\|223473	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones].	1.28346e-142
NZ_CP033364.1\|WP_056562306.1\|4558711_4559707_-\|sterol-desaturase-family-protein	gnl\|CDD\|225546	COG3000, ERG3, Sterol desaturase [Lipid metabolism].	2.15552e-43
NZ_CP033364.1\|WP_056562321.1\|4565192_4565957_+\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	1.03936e-97
NZ_CP033364.1\|WP_056562295.1\|4551141_4551876_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133022	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. The UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. This protein family belongs to Glycosyltransferase 2 superfamily.	4.80892e-46
NZ_CP033364.1\|WP_056562303.1\|4557572_4558715_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|227940	COG5653, COG5653, Protein involved in cellulose biosynthesis (CelD) [Cell envelope biogenesis, outer membrane].	3.29012e-113
NZ_CP033364.1\|WP_172373987.1\|4553597_4556978_-\|hypothetical-protein	gnl\|CDD\|372485	pfam13116, DUF3971, Protein of unknown function. Some members of this family are related to the AsmA family proteins.	3.5029e-05
NZ_CP033364.1\|WP_056562318.1\|4564029_4565196_+\|ROK-family-protein	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	9.17115e-55
NZ_CP033364.1\|WP_172373981.1\|4541727_4542996_-\|Fe-S-cluster-assembly-protein-SufD	gnl\|CDD\|223791	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones].	2.92364e-120
NZ_CP033364.1\|WP_056562309.1\|4560010_4561315_+\|M23-family-metallopeptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	1.26025e-42
NZ_CP033364.1\|WP_172373988.1\|4562632_4563811_-\|M24-family-metallopeptidase	gnl\|CDD\|274380	TIGR02993, ectoine_eutD, ectoine utilization protein EutD. Members of this family are putative peptidases or hydrolases similar to Xaa-Pro aminopeptidase (pfam00557). They belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. The exact function is unknown.	6.99899e-151

>NZ_CP033364.1|WP_056562295.1|4551141_4551876_-|glycosyltransferase-family-2-protein
MPDALISIVIPCRNEAANLPLLIDEIETAMAGRDFELIIVNDGSTDETAAVLTEQAALRSFPVRELRHQKSAGQSLSVRSGAWAARGGIVATIDGDGQNDPQYIPVLVDALRRAGPDFGAAQGQRLKRRDSKVKQLASRFANWLRNAILHDETRDTGCGLKAVHTDILRKLPFFDGTHRFVPALVIQEGYRVVHCDVVDRSRRHGKSNYGIFDRGLQGALDLGGVWWLRRRRRRMPKVEEIKRV
>NZ_CP033364.1|WP_056562293.1|4550816_4551149_-|lipid-A-disaccharide-synthase-N-terminal-domain-containing-protein
MFNVLQELATWLHQVFIKQFDAWVLLGFIAQFFFTMRFVVQWLASEKAKRSVVPVAFWFFSLFGGGLLLIYAIQRQDPVFIAGQAMGMFIYIRNLWLIANERKAAMTKVD
>NZ_CP033364.1|WP_172373986.1|4549126_4550776_-|glycosyltransferase-family-39-protein
MALNRNYIFLFLFSLVMTVSGLASLPPIDRDESRFVQATKQMAESGDYVDIRFQEASRYQKPIGIYWLQSAAVTLSGKGAEAPIWVYRTVSALGIAIAVLAIAWTGTNLFGANAGLAAGLVMAAIFATAFEGRDAKTDAMLLACCVAAQGALAQIYLSARRNEPVAGHLWWIFWIAQGAAILIKGPIAPLLSALTIAVLFAFERDGRWLSKLRIGRGLLLVVVIALPWLAAITWKSHGAFLQQAVGKDMLGKVASGEESHGLPPGFYMLTYSLFMWPFGLIAVGAGLQALNRLRDDPRLRFCLAWYIPFWLVFELIPTKLPHYVLPAYPGMALLIGWLLTLQPQDANAPLKRWQQWLWWSTAFGLAVVSLGLAAVCMGAPIYLTHTFSWWSIPAAAAALGTGYLGFSRQLQVPLPRIGATAACAGITYALLFGVIAPSLKPIWLSPAIRQAVLANKACDTTVLASARYQEPSLVFLVGTKTVLTDIGGVAEHLLADPGCALGLAPIEDEQKLNGMLSVRGKSVNRVAEIDGLNYSSGDKLSLGLYRIAQ
>NZ_CP033364.1|WP_172373985.1|4548279_4549101_-|phosphatase-PAP2-family-protein
MLVKSRPPVSGRLLGTGRRSVDNFLDTMRIVRGRFAARPARYPNMVWSVWGLGWVLLTAAAFVRLDTPAGMLRDQWSPGFVRLADFFTQFGLGGWYLIPPALLLVAANLIDWRSLSRRSLMLAYNWTCLAFLVLSAVGLSGLTVNVLKYAIGRARPLYFQDFGVLALHPFAFDARFAGFPSGHATTMGAVFGVLLLLFPRRWYMALAVTACIASTRVFVGAHYPSDTVAGFGLGCAFALACGVVFARLGFIFRPTQSGLPVRKASFRLVAPER
>NZ_CP033364.1|WP_172373984.1|4547610_4548261_+|FMN-binding-negative-transcriptional-regulator
MYEPPHFQETRPDVLHGLIRSHPLGMLISNGPDGPVADAIPFLLDAGASPNGRLRAHLAKANPHWKLIAGNPSSPVLIVFQGTDAYVTPSWYETKRETGKVVPTWNYAIVQVRGTAKVIDDQDWLAQQIADLTISQEGPREAPWAVTDAPPPFIQSQIKGIIGLEIEISEIHGKWKVSQNRPVADRAGVAQGLESETANSSDMARLVRSYGGLDSN
>NZ_CP033364.1|WP_027042409.1|4546914_4547589_+|alpha/beta-hydrolase
MPEVIFTGPAGRLEGRYQPSKEKSAPIAIVLHPHPQFGGTMNNKIVYDLFYMFQKRDFTTLRFNFRGIGRSQGEFDHGTGELSDAAAALDWVQSLHPDSKSCWVAGYSFGSWIGMQLLMRRPEIEGFISIAPQPNTYDFSFLAPCPSSGLIIHGDADKVAPPKDVQGLVDKLHTQKGITITQKTLPGANHFFANDADLLIEECADYLDRRLAGELSDPRPKRLR
>NZ_CP033364.1|WP_172373983.1|4545509_4546673_-|cysteine-desulfurase
MAVKRAYLDYNASAPLLAAAREAMVAALDVAANPSSVHAEGRAARRLIETARREVAALVNARPEHVVFTSGATEAASTLLSPDWRMGRGSVRMSRLYVCEADHPCLLNGGRFPAAQMTRIGVDADGIADLAALATALSGHDKADGLPLVAIHAANNETGVIQPIDRIAAIVKASGGILVVDAVQAAGRVSIDMSAGYADYLILSSHKIGGPKGVGAIVAAADLMMPKPLINGGGQEKGHRGGTENLAAISGFGAAACEAVAGLPTIDMVRERRDEIEAIVKMLVPDAEIFGTGAPRLANTTFFAIAGVKAETAQIAFDLAGVALSAGSACSSGKVGPSHVLKAMGYGDSLGALRVSIGPATGAEDVELFRSALAGIAARRAGKEKAA
>NZ_CP033364.1|WP_096445255.1|4543804_4545322_-|Fe-S-cluster-assembly-protein-SufB
MPAVQDTIDRVRKIDVDQYKYGFQTEIAVDKAPKGLSEDIIRFISAKKDEPSWMLEWRLEAYRRWLTLEEPTWARVHYPKIDFQDIYYYAAPKSTPGPSSLSDVDPELLKVYEKLGIPLREQEILAGVQKTDASDLEEPSDNVYKSGRVAVDAVFDSVSVVTTFKKELAQAGVIFCSISEAIREHPELVQKYLGSVVPTSDNFYATLNSAVFTDGSFVFVPKGVRCPMELSTYFRMNEKNTGQFERTLIIAEEGAYVSYLEGCTAPQRDENQLHAAVVELVALDDAEIKYSTVQNWYPGDAEGKGGIYNFVTKRGDCRGDRSKISWTQVETGSAITWKYPSCILRGDDSSGEFYSIAVSNGYQQVDSGTKMIHLGKNTSSRIISKGIAAGFSQNTYRGQVSAHRKATNARNFTNCDSLLIGDQCGAHTVPYMEAKNSTAQFEHEATTSKISEDQKFYVMQRGIPEEEAIALIVNGFVKDVIQQLPMEFAVEAQKLIGISLEGSVG
>NZ_CP033364.1|WP_172373982.1|4543021_4543777_-|Fe-S-cluster-assembly-ATPase-SufC
MLEIRNLHARIVDDGTEIIRGLNLTVKAGEVAAIMGPNGSGKSTLSYILAGREDYEVTEGDILYNGQSILEMDPAERATSGIFLAFQYPMEIPGVATMEFLKVAMNEQRKARGEEPLKIPEFLKRVKEAAASLSMDMAMLKRPLNVGFSGGEKKRAEILQMRLLEPKLCVLDETDSGLDIDALKIVSDGVNALRAPDRAFLVITHYQRLLEHIVPDSVHVLYKGQVIKSGDKSLALDLEANGYAGVIGEAA
>NZ_CP033364.1|WP_172373981.1|4541727_4542996_-|Fe-S-cluster-assembly-protein-SufD
MNMHTQPQRTPAETALIDAFGDRLSLLPGDGAVMLKRDDAIEAIKHGLPTRRVESWHYTDLRRLLNAVPDFDPAAMAKAVAPIVEGSAVLPVLNGKSDAKVPVLEGVTVQRLSEKLIDGSIAPGLDPYGADDAIGALNAAFVADGYFVDIADGTELEKPIELQNIQAGGQTHVRLPVRVGAGAKAVIVERQAGDGAALVSSVSQLVLGEGAEVTWLIVQEQPETATHLAQFKAHIGKNAKLTLFVMNAGGKLVRQEVMVRTTGEGADFKLRGINLLAGDTHSDVTMVLDHAVPHTTSTEIIRNVVTGKARGVFQGRINVHQYAQKTNAKMACNTLLLSDDGEFSTKPELEIFADDVVCGHGATVTEIDHDHLFYLMARGVDEKSARGLLVKAFVAEVIEELDDEAIVEALEARLDDWFLTHG
>NZ_CP033364.1|WP_056562298.1|4552245_4553499_+|tyrosine--tRNA-ligase
MPAFKSDFLRTMSERGFIHQISDETGLDQLFAKETVTAYVGYDATATSLHIGNLISATMLYWLQETGHRPIALMGGGTSMIGDPSFRDDQRSLLTPEAIATNIEGIKRIFGRILRFGDGPNDAIMVNNADWLMKLNYVEFLRDVGRHFSVNRMLTFDSVKLRLDREQSLSFLEFNYMILQGYDFVELARRQNCRLQMGGSDQWGNIINGVDLGHRMGTPQLYALTTPLLTTSSGAKMGKSAKGAVWLNGDLFSPYDFWQYWRNTEDADVERFLKIFTRLPLDEIARLAALGGSEINEAKKVLATETTAIVHGREAAQLAEETARKTFEEGALADTLPTVKADKAALEAGVGILSLLVTAGLASSNGEARRHIQGGAVRINDQTVSDDRRMVTLQDLSPENVVKLSLGKKKHVLVRPG
>NZ_CP033364.1|WP_172373987.1|4553597_4556978_-|hypothetical-protein
MDQEQPQHEKIRFRRDEITDLGALPSACRVPPLGQASIGRGFRTLSRVFAGVVSLVLLAAVVVYLVGASGIGSERLRAEAEIAIERLAGVDVHVAVGPARITLDSSSFVALQVSDVSLKTSDGKPMADAGRVRFGMRLIPLLWGEVRLTSARISDARIVTAAMPSGGDWTAGLRNEDGLVDPEKLSDAVFGNIHQALDAVREDSLRRIDLSNVEFVLPETGAIKLVTITDATVVQSGPGGMEFSSEANVDGRKVTLAASATRDIAAHRVTALTANIDLAAADNTAAGAGKLGAVALKLTGSEGSGANASRLTAAISSAGSVLDLGTRGLLPADFDVDATLVHGSNKIQVDRLLLKTGRSSFNFGGSIGPKPATGEAGEEPSYRYDLTSDGSTLAPSESPEPALPFIARIAGVYQTKSHKLVAEQIAVRSDASGEVLGTAAVEFVDGKAPGVNLALNVHDMLVSHVKQLWPWFSARNARLWVLDNLFGGRVVDANLQFQVVPDRLGNGVPLSADEVFGRFQIEGARFDTAGRIPPIRDAVGVVAFHGNDVDISLSSGTVFMPSGRTVAASNGTLSVKAANHPPVIGALDIDVEGEASAVAELASYEPINAMRHVGFLPEDLSGSVTGHVRADIPLQSGVDTSKLDWLVSLDYTGLSLAKPFEGQTVTDADGSITVDPVKAVISAKASLNNIPAELDLVEPLADDGPPRSRKVALVLDDKIRAAAMPGLTPMLGGTVKVAIDKSGSGNQNVSADLTNARLDIPWAGWSKGAGVPASVTFVMTKSGDTTTLSDFNLDGKTFSIDGGIVLVNGALSSAKFSKVTLNRGDDVAISVKRSGKGYAVDINGNALDARSLIKQFMSDVDTATKTTGTDNISVSADVGQLTGFHDEQLSNLKLDYSAAGSRVNGLKVSATASSGAAIAVSNTAGDGRRSLNVQSADAGAILRFLNIYEHMEGGSITLALAGAGDGPMRGKVDTSNFFIVNEPKLASIVSTTPAGDNRSLNQAVKGNLDTSRVKFERGYAEIEKGSGYLKLANGVLRGPRIGTTFQGILYDQNNNMDMTGTFMPVYGLNRIFGELPIVGALLGNGRDRGLIGVTYRLRGNANKPVLDVNPLSVIAPGIFRSIFEYR
>NZ_CP033364.1|WP_056565414.1|4557073_4557541_+|peroxiredoxin
MADLDVGDLAPQFDLPRDGGGSLNLAASAGKPVVLYFYPQDDTTSCTQEAISFSQLKPDFEKAGAVVIGLSPDPVKKHDKFKSKYNLTIDLAADEERKVIEAYHLWVEKSMYGRKYMGVERATFLIGRDGRIARIWRKVRVKGHAEEVLEAVRAL
>NZ_CP033364.1|WP_056562303.1|4557572_4558715_-|GNAT-family-N-acetyltransferase
MNAPFVLAIPRTRTFEVVTSAERLAEITPAWSALWRRVDGLVFQHPEWIAAWWRTTPQQELRTLRIGLAWNGDRLDGVIALATFKRSGIRMLEWAAKDHSDYGDALLAPDCNPQALSRLWQYVLDQGGFDLVYLNRLLPDAGVGALLDPASRHGKALRPNHRSEISYRVAGPWQGGAKWFETLSKKARQNYRRGRKFMEEGGELRFRLLDADEPREPVLARVAALKRLWLARHGRVSDLFDEGSPVLAALVSVLAKLGLLRIFVLELNGTIIAVSINFEQHGTMMAFVTTYDPEYERASPGMVLMMDYIQWSLDRGLAKVDFLCGGEDFKRRFATESVTLWSMMGARGLRGHLAALADHANHVAKSWRARRQPKAEASDE
>NZ_CP033364.1|WP_056562306.1|4558711_4559707_-|sterol-desaturase-family-protein
MLSDLVGKILDKISGTGLLATGLLLLTAFVSALVAYWRTVETKSWKEFFEFAIPHEAITHPSAKADLLFWVTKKALMPFLMLPAGIVFVTAVGYATNWLFSTLFQFQPPLIEGPAGPVTVLVFTITMLLAYDISYYLYHVAQHRYPLLWELHKVHHSAEVMVGITKDRVHPLDELMNRAWDGLIVGVCFGIWSLISLNLVELTVFGVNVYVMRNILMMDFVRHTHFKISFGPLNNVILCPHWHQLHHSTDPRHYDKNFGLLFSFWDRLFGTLCVPKPDEDFKFGLIDRDVRDYQSLAGLYLMPLKRMWRHIARRMRPGKPRTSRSSEGTRP
>NZ_CP033364.1|WP_056562309.1|4560010_4561315_+|M23-family-metallopeptidase
MNATGQSAVFGRRKEPHTVIIARGNEIRHFTIRPWLAAFIGSALAAIAIGYLLATSYLVLRDDLIGATTARQARMQQAYEDRISALRAQVDRITSRQLLDQQLMETKVSELLERQTQLSQRHGRLGPLLERAENEVGTEPVEDPATAAKPDKHADVTGSISQPAPNYAVASLGVDLGAADTRPFSLWSTRTDPLPSDSAADRADKLFVSINQSLKSIENEQLTRISTLADNAYKSADAIQQALAAAGLPVDSDFGKNESDVGGPLIPLDSSMIFDSKVKELDEALDTLDQLKKEARRLPLANPAPGHSVTSPFGVRTDPILGTAALHSGMDFRAPIGMAAKVTAPGIVTKAGWNGGYGRMVEVDHGNGFATRYGHLSEIDVTVGEKLDAGAIVGKTGSSGRSTGPHLHYEVRHNGEAIDPLRFLTVGKKVAQYL
>NZ_CP033364.1|WP_056562312.1|4561407_4562646_-|amidohydrolase
MSNPEGSAMAGDVAGPGAVDIDAGLLDRMIEIRRHLHRNPELSNREADTQRYLRQKLAGEGITDIRDVAGFGLAVDIVGTGKPSNRKIAIRADIDALPIEEESGVDYASTNPGVMHACGHDAHASMGFAVAAHLHQSRADFGGTVRLIFQPAEEDSPSGGKRVVEEGLLDDIDAAICLHVDPYTPSGKIAVRSGPYTLACDTFDAVVIGEAAHAAKPYEGIDAIAVACSMVSELQKIVSREIDPYDPLVISVTGINGGSAYNVIAGKVTLKGTIRSGSDATRERAWRRVREILESTAASHGASVELAIHKGEPGVVNDAEMAELVVASGKACIGADNVLNTPGWAIADDFGYYSEKRPSVYFRLGIRNEQVGSVFPLHHPKFRVDEAALKIGAATLIAAATGFLSIQPGSTD
>NZ_CP033364.1|WP_172373988.1|4562632_4563811_-|M24-family-metallopeptidase
MIELPFARDEYQQRLRKIRAEMARRGLELLVVNDVASQHYITGYDGWSFYTPQVVLVPLEEVEPVWIGRAMDAAGGLLTAWMKPENVVGFPEDHVQRADRHPMDWIANWIAARGWGARHIGIELEAYYFSPKAHARLVAGLPNAKWHDADLLVNWIRAVKSAPEIAYLRKASTLAEAAVARAFDVIAPGVRECDAIAAIQAAQIAGSRDFAGDITALPPTILGGENASAPHIMWSDRRFGDNETIALELAGVCRRYAAGLARTMQLGKTPARVSDTAKAVIEGMDAVLDAVRPGTSAEAVEGAWRKVIQRYGLKKESRIGYSIGVAYPPDWGEHTISLRPGDKTVLQPGNVLHSILGMWMDGWGIEVSETILVTETGHETLTKFPREIHVKS
>NZ_CP033364.1|WP_056562318.1|4564029_4565196_+|ROK-family-protein
MALRGTNQEFGRPYNRRIVLESIRLHGPIARGEIANRVGLTVQTVSTIVRELEEQGYILSVREEPKGRGLPPATLRINPEGGYAVGIHITPLGINAALINLSGDVIESTYREAPNATPDHAFDLIGAMAIELTRLRAGGRVLGVGLALPGPFGVESMSFVGPTTMSGWKDVALRERLAASTGLPAFFETDMAAAAMGERLYGLGAQFSEYYYLYFGVGLGGVMVHDGSPLRGAWGNAGEVGHIPVVPGGEACPCGNRGCLERYLSLEALRRWNGSEADWVAEVAPIFHNAIAVIENLFDPETVILGGLASTDLLERLAGSTEGLHNSVSAREDRTTPRVMVARGGQHSVLRGAAALAVSGVLSPRFGQMFTAERERGRDLLAPKEIAA
>NZ_CP033364.1|WP_056562321.1|4565192_4565957_+|sugar-ABC-transporter-ATP-binding-protein
MSEPLLVLDNVTKNYGAIEALKGISFSIGKGEVVALLGDNGAGKSTLVKIIAGGLEPTSGRMLFEGKEFLARSPAEAKAAGIETVYQDLSLCTNVDVVANFFMGREITRKVLGIPVLDERAMEAVVAKALASAGTRIPSLRTNVEHLSGGQRQAIELNRFVHWGGKLVLLDEPFAALGVEQTRRGLDMIRQVASQGIGVVIITHIMQQAFQVADRIVVIRQGVVAGDVARNKTSPDAVINMITGETLAGAGPAG

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Crispr_ID: NZ_CP033364_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP033364_3

6745186-6745282

Unclear

Consensus_repeat	Method
AAACCGCTACGCACTTTTGGGCGACATGGGCCCTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP033364_3

>merge|NZ_CP033364|3|6745186-6745282|CRISPRCasFinder
AAACCGCTACGCACTTTTGGGCGACATGGGCCCTTGGTTTTTTGCGCATGTCGTTGCCCCAAAACCGCTACGCACTTTTGGGCGACATGCGCCCTTG

>NZ_CP033364|3|3|6745186-6745282|CRISPRCasFinder
AAACCGCTACGCACTTTTGGGCGACATGGGCCCTTG	GTTTTTTGCGCATGTCGTTGCCCCA
AAACCGCTACGCACTTTTGGGCGACATGCGCCCTTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP033364.1\|WP_172374956.1\|6747645_6748419_+\|enoyl-CoA-hydratase	unknown	unknown	gnl\|CDD\|180295
NZ_CP033364.1\|WP_056569985.1\|6736476_6737766_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|227298
NZ_CP033364.1\|WP_172374952.1\|6745432_6746674_+\|phosphopentomutase	unknown	unknown	gnl\|CDD\|235430
NZ_CP033364.1\|WP_172374954.1\|6746666_6747557_+\|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase	unknown	unknown	gnl\|CDD\|234899
NZ_CP033364.1\|WP_065005396.1\|6737816_6738554_-\|CpaD-family-pilus-assembly-protein	unknown	unknown	gnl\|CDD\|227748
NZ_CP033364.1\|WP_056569958.1\|6748600_6748867_+\|30S-ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|178943
NZ_CP033364.1\|WP_172374948.1\|6738568_6740086_-\|type-II-and-III-secretion-system-protein-family-protein	unknown	unknown	gnl\|CDD\|227299
NZ_CP033364.1\|WP_056569963.1\|6742918_6743509_+\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|227296
NZ_CP033364.1\|WP_172374950.1\|6744173_6745097_-\|phosphate/phosphite/phosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|225762
NZ_CP033364.1\|WP_056569962.1\|6743543_6744167_+\|pilus-assembly-protein	unknown	unknown	gnl\|CDD\|227296
NZ_CP033364.1\|WP_056569964.1\|6742357_6742780_+\|pilus-assembly-protein-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|379302
NZ_CP033364.1\|WP_056569967.1\|6741824_6742001_-\|Flp-family-type-IVb-pilin	unknown	unknown	gnl\|CDD\|226366
NZ_CP033364.1\|WP_056569971.1\|6741119_6741638_-\|prepilin-peptidase	unknown	unknown	gnl\|CDD\|227295
NZ_CP033364.1\|WP_056569973.1\|6740082_6740898_-\|Flp-pilus-assembly-protein-CpaB	unknown	unknown	gnl\|CDD\|226268

Protein	Function_ID	Function_description	E-value
NZ_CP033364.1\|WP_172374956.1\|6747645_6748419_+\|enoyl-CoA-hydratase	gnl\|CDD\|180295	PRK05862, PRK05862, enoyl-CoA hydratase; Provisional.	4.24433e-176
NZ_CP033364.1\|WP_056569985.1\|6736476_6737766_-\|AAA-family-ATPase	gnl\|CDD\|227298	COG4963, CpaE, Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion].	8.76902e-115
NZ_CP033364.1\|WP_172374952.1\|6745432_6746674_+\|phosphopentomutase	gnl\|CDD\|235430	PRK05362, PRK05362, phosphopentomutase; Provisional.	0
NZ_CP033364.1\|WP_172374954.1\|6746666_6747557_+\|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase	gnl\|CDD\|234899	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase.	2.0628e-151
NZ_CP033364.1\|WP_065005396.1\|6737816_6738554_-\|CpaD-family-pilus-assembly-protein	gnl\|CDD\|227748	COG5461, COG5461, Type IV pili component [Cell motility and secretion].	3.03145e-99
NZ_CP033364.1\|WP_056569958.1\|6748600_6748867_+\|30S-ribosomal-protein-S20	gnl\|CDD\|178943	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed.	2.00368e-24
NZ_CP033364.1\|WP_172374948.1\|6738568_6740086_-\|type-II-and-III-secretion-system-protein-family-protein	gnl\|CDD\|227299	COG4964, CpaC, Flp pilus assembly protein, secretin CpaC [Intracellular trafficking and secretion].	1.55772e-157
NZ_CP033364.1\|WP_056569963.1\|6742918_6743509_+\|pilus-assembly-protein	gnl\|CDD\|227296	COG4961, TadG, Flp pilus assembly protein TadG [Intracellular trafficking and secretion].	4.88721e-12
NZ_CP033364.1\|WP_172374950.1\|6744173_6745097_-\|phosphate/phosphite/phosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|225762	COG3221, PhnD, ABC-type phosphate/phosphonate transport system, periplasmic component [Inorganic ion transport and metabolism].	6.49674e-62
NZ_CP033364.1\|WP_056569962.1\|6743543_6744167_+\|pilus-assembly-protein	gnl\|CDD\|227296	COG4961, TadG, Flp pilus assembly protein TadG [Intracellular trafficking and secretion].	2.37164e-27
NZ_CP033364.1\|WP_056569964.1\|6742357_6742780_+\|pilus-assembly-protein-N-terminal-domain-containing-protein	gnl\|CDD\|379302	pfam13629, T2SS-T3SS_pil_N, Pilus formation protein N terminal region.	2.33822e-19
NZ_CP033364.1\|WP_056569967.1\|6741824_6742001_-\|Flp-family-type-IVb-pilin	gnl\|CDD\|226366	COG3847, Flp, Flp pilus assembly protein, pilin Flp [Intracellular trafficking and secretion].	2.71057e-15
NZ_CP033364.1\|WP_056569971.1\|6741119_6741638_-\|prepilin-peptidase	gnl\|CDD\|227295	COG4960, CpaA, Flp pilus assembly protein, protease CpaA [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	3.2423e-44
NZ_CP033364.1\|WP_056569973.1\|6740082_6740898_-\|Flp-pilus-assembly-protein-CpaB	gnl\|CDD\|226268	COG3745, CpaB, Flp pilus assembly protein CpaB [Intracellular trafficking and secretion].	8.82821e-97

>NZ_CP033364.1|WP_172374950.1|6744173_6745097_-|phosphate/phosphite/phosphonate-ABC-transporter-substrate-binding-protein
MNAARKACAALVAVHGALWCGPARADWRDDIGTFRIGIVAEPGAGNTVPGLALLTQSFTNALGMKVEFVVARDYAALIDAHANARIEYAIYSATAYATALQRCGCIEPLVAPVDSDGAAGIRSVLLTRDGKLPDLAAMEAHRIAMPPPDSVGGSLLPLAGLAAEHVKIAEDSPFLVHADSLSAAEKMLFDGQADAMFGWVTATADSQPLLSDGTQARLEEAGLAPSAFQVVWMSGLLRYGPHAVRSDLDPEAKRRLTVFLTNLKSTTPDVYDLLESKHSGGFLTVAPKDYAMAEAVVRMVTSDGGQQ
>NZ_CP033364.1|WP_056569962.1|6743543_6744167_+|pilus-assembly-protein
MMRAGAHPGIAGIWGKVVGFRSNRRGVAAVEFALIVPILLVMYFMTMEASQAIETSKKVSRIGSMVADLVTQQPTIVKADLDAIMKIGTSTIQPYNRSTPNITITAIQVTADTPPNVNVVWSRKVVDGVYSIATALPATTTVPATLRVAGTFLIRVESNLAYSPIINWQPDTQQKLGLTQSLSTTIPMGETYYLRPRRSLTIPCSDC
>NZ_CP033364.1|WP_056569963.1|6742918_6743509_+|pilus-assembly-protein
MRNGFGSTVRHKVERARSFRRFVRDRRGSTALEFALLALPFALLVFAILESCISFAGQEVMANITDDVARQLRTGQLKPADVAGDKLTTLICGRLQIIVSTDCPQQLLVDLREYPTFADAATASFKIQNGDVVLMQGTNSQTFANTPGLAESKNMLRVFYKWPVMTDLMAKSMANLSGGRTLHFASVTWQNEPFDN
>NZ_CP033364.1|WP_056569964.1|6742357_6742780_+|pilus-assembly-protein-N-terminal-domain-containing-protein
MAVQRSSILIAVLLAATSLITPARAGADIEVTMNQAKIVKLSRPADTIVVGNPAIADASVQDASTIVLTGKGFGVTNLVVLDQDGSPIVDAQVTVVRQAASSVRIYRRAEVQTMSCTPYCESSYKSEAEKSSEAEMNVSR
>NZ_CP033364.1|WP_056569967.1|6741824_6742001_-|Flp-family-type-IVb-pilin
MSNLFARFVKDESGATAIEYGLIAALIALAIITGAGALGNAINAKFTSIGSTLNSSGS
>NZ_CP033364.1|WP_056569971.1|6741119_6741638_-|prepilin-peptidase
MLEALIFVVFPFCMLFAAISDMLSMTIANRVSVLLVAVFALVAPLTGMEWAAYGWHFAAGALVLAVTFGLFAMGGMGGGDAKLLAATAVWMGLNVHLVEYLVVSTFIGGLLTLAILVYRKSPLAVITGRNPFLRHFADDTTGVPYGIALGLGGLLTYPDSPLMVWALARLAS
>NZ_CP033364.1|WP_056569973.1|6740082_6740898_-|Flp-pilus-assembly-protein-CpaB
MPASRLIILSVAVAAAGGAGYVAKNMVAAPPPQIVVNSGPQAPAVPLQDVLVLSGDVAMGNALQNNISWQSWPADGVNANFITKATAPDALDKLKGSIARVPMYAGEPVRRSKLIGEGQSFMSSILPSGMRAVATAISADTSAGGFILPNDFVDVIMTRRADANSGSTGFNTETILKNIRVLAIDQTIQEDEEGKKTRVGQTATLELTPKQAEIITVAQQMADRLTLALRAITDTQEKNVDEADYLVSGNGRKGTVRLIKSGEVSEVGARK
>NZ_CP033364.1|WP_172374948.1|6738568_6740086_-|type-II-and-III-secretion-system-protein-family-protein
MRLSGKLPAIAAAAFGLLLVGTNVQGVVEAKSTQVTATTATQRVKLGLNKSVVIDLPSDAYDILVANPSVADAVTRTARRIYLFGKSVGETNIFVFGPNGEQIASLDLAVERDVAGLEGYIKRFLPTSAVKVELLNDNVVLTGTVDTPLDAKRAVDLATIFVSGGEATTGQYSQTAAGGSAQSGVDINNPDQERRVSKIVNLLQIIGDDQVTLKVTVAEVSRSVMKQLGVNMVGSGGSNGISYGALSDPFAGLGKPLSNAGLGISTSGLQSYINAMEQSGVMKTLAEPTLTAVSGEKATFKVGGEYNMVSSVSANVSSDNQTGLKTYTVDKIEYGIGLEFQPVVLSPGRISLKVRTSVSEPTTEGSVSASTDNKSIGMNALSLRKRLADTTVELPSGGSMMIAGLVRDDVRQAVTGLPGLTKIPVLGALFRSRDFVRNETELVIIITPYLAKPVARNDLAKPDDNFNPPSDGAGMFLGKVNRVYGTMQTDKPNGRYHGVVGFIYK
>NZ_CP033364.1|WP_065005396.1|6737816_6738554_-|CpaD-family-pilus-assembly-protein
MSQSALNTRGIVTTMRTGRSRTSLRALSILAVAATALLAGCAQRDSITVGAIPDDYRTNHPIVIAEKNQKIDLPVGAGDRGMTGSQRDTLLGFLDGYDKSAAPTLTIQVPSGSANQVAASAAGRDFARLAVASGVKRNRIIVVSYQAGSSEVSAPVRVSYIAVRAQTDKCGRWPDDLTETSENKHYADFGCSYQNNLAAQMANPADLLGPRKQTTIDAENRGAVIDVYRNRGISDEFLGNSEVTY
>NZ_CP033364.1|WP_056569985.1|6736476_6737766_-|AAA-family-ATPase
MTMSNLAYDATVDGGDTSPQDIAAMQALRPVPRISIQAFCETEGVANPVERAGEDRRMTKAHLKVHMGGVPTAIEFYQSAPTPNLILLESRSEPKQLLEQLAQLSEHCDPSSKVVVIGHYNDVGLYRELIRSGISEYVIAPVSMADIVSVVSSIFVDPEAEPLGRSVAFVGAKGGVGSSTISHNVAWAMSSLFKSEVVVADLDLAFGTANINFDQDPAQGIAEAVFSPERIDEVYLDRLLTQCAEHLSLLAAPSTLERVYDFDPDAFAQLVDTAQRSVPLLVLDVPHVWTGWAKNTLVKADEIVITATPELANLRNTKNLIDMLKRLRPNDPPPKLIINQAGVPKRPEISPSDFAEPLGLTPMAVIGFDPLLFGNAANNGRMLGEMDAKNQIVATINEIAHVLTGRSEIRTKKKAGLGSLLGKLSRNKK
>NZ_CP033364.1|WP_172374952.1|6745432_6746674_+|phosphopentomutase
MARAFLFVLDSFGIGGAADAERYGDAGANTLAHIAEACAEGRADRERLRQGPLFVPHMASLGLGKAAETATGLAFAHFGTDLLANAFHGAAQEVSSGKDTPSGHWEIAGLPVRFDWGYFPDTVPAFPADLTAAMIREGEVSGILGNCHAPGTEIIERFGEEHIRTGKPICYTSVDSVLQIAAHEVHFGLERLYEFCQVVRRLVDPLRIGRVIARPFVGETAATFERTYNRHDYAVPPPEPTLLDRLTERGSRVIAVGKIGDIFAHRGISEVRKAAGNMAMFDKALGAMDDAADGDLVFANFVDFDTEFGHRRDVAGYAAALEAFDRRLPEALARLRQGDLLILTADHGNDPTSRGTDHTRERIPVIGTGPGLIGSDIGLRTTFADIGETVAEHLGLAPGRHGTSFHAMIGGHA
>NZ_CP033364.1|WP_172374954.1|6746666_6747557_+|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase
MPELPEVETVRRGLQPVLEGARLARVEARRPDLRFPFPERFSERLTGRTITALGRRAKYLTMHVRDGPLLICHLGMSGSFRIETDDDSDTPGVFHHERSKSTVHDHVVFHVISAAGALSRVIFNDPRRFGFMLFAEGSPETHPMLAGLGVEPTGNTLDGVLLASLLKGRRSPLKAALLDQRLIAGLGNIYVSEALWRAGLSPLREAGTIARPGKKAREQSERLAEAIRSVISDAIAAGGSSLRDYVHTDGSLGYFQHSFAVYDREGQPCPKPGCGGHIERIVQSGRSTFYCRTCQS
>NZ_CP033364.1|WP_172374956.1|6747645_6748419_+|enoyl-CoA-hydratase
MAYETIISETRGKVGLITLNRPKALNALNSQILAELVSAVNGFGADPGIGAMVVTGSDKAFAAGADIKEMQAISYVDAYSQDFFVGWEEFTRARKPIIAAVAGYALGGGCELAMMCDFIIAADTAKFGQPEITLGVIPGMGGSQRLTRFVGKSKAMDMCLTGRMMDAAEAERSGLVSRVVPAGELIEEAIRAAAKIADFSLPSVMMAKEAVNRSYETTLAEGLRFERRLFHSLFALEDQKEGMAAFAEKRKPNFTNR
>NZ_CP033364.1|WP_056569958.1|6748600_6748867_+|30S-ribosomal-protein-S20
MANTSSAKKATRKIVRRAAINKNRRSRVRTYVRQVEEALASGDKAAAQAAFKAAEPELMRAATKGVIHKNTASRKVSRLAQRLKVLSA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP033364_3	3.1\|6745222\|25\|NZ_CP033364\|CRISPRCasFinder	6745222-6745246	25	NZ_CP035000	Rhizobium acidisoli strain FH23 plasmid pRapFH23b, complete sequence	102042-102066	3	0.88
NZ_CP033364_3	3.1\|6745222\|25\|NZ_CP033364\|CRISPRCasFinder	6745222-6745246	25	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	713433-713457	3	0.88
NZ_CP033364_3	3.1\|6745222\|25\|NZ_CP033364\|CRISPRCasFinder	6745222-6745246	25	NZ_CP023068	Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence	199727-199751	3	0.88
NZ_CP033364_3	3.1\|6745222\|25\|NZ_CP033364\|CRISPRCasFinder	6745222-6745246	25	NZ_CP023071	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence	674007-674031	3	0.88
NZ_CP033364_3	3.1\|6745222\|25\|NZ_CP033364\|CRISPRCasFinder	6745222-6745246	25	NZ_CP035000	Rhizobium acidisoli strain FH23 plasmid pRapFH23b, complete sequence	565944-565968	4	0.84
NZ_CP033364_3	3.1\|6745222\|25\|NZ_CP033364\|CRISPRCasFinder	6745222-6745246	25	NZ_CP020951	Rhizobium sp. CIAT894 plasmid pRheCIAT894d, complete sequence	97299-97323	4	0.84
NZ_CP033364_3	3.1\|6745222\|25\|NZ_CP033364\|CRISPRCasFinder	6745222-6745246	25	NZ_CP023068	Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence	592330-592354	4	0.84
NZ_CP033364_3	3.1\|6745222\|25\|NZ_CP033364\|CRISPRCasFinder	6745222-6745246	25	NZ_CP050092	Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b6, complete sequence	389445-389469	4	0.84
NZ_CP033364_3	3.1\|6745222\|25\|NZ_CP033364\|CRISPRCasFinder	6745222-6745246	25	NC_012586	Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence	1049462-1049486	4	0.84
NZ_CP033364_3	3.1\|6745222\|25\|NZ_CP033364\|CRISPRCasFinder	6745222-6745246	25	NZ_CP020897	Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5a, complete sequence	113-137	4	0.84
NZ_CP033364_3	3.1\|6745222\|25\|NZ_CP033364\|CRISPRCasFinder	6745222-6745246	25	NZ_CP021026	Rhizobium sp. TAL182 plasmid pRetTAL182b, complete sequence	95-119	4	0.84
NZ_CP033364_3	3.1\|6745222\|25\|NZ_CP033364\|CRISPRCasFinder	6745222-6745246	25	NZ_CP013635	Rhizobium sp. N324 plasmid pRspN324e, complete sequence	495329-495353	4	0.84
NZ_CP033364_3	3.1\|6745222\|25\|NZ_CP033364\|CRISPRCasFinder	6745222-6745246	25	NZ_CP013553	Rhizobium phaseoli strain N931 plasmid pRphaN931a, complete sequence	113-137	4	0.84
NZ_CP033364_3	3.1\|6745222\|25\|NZ_CP033364\|CRISPRCasFinder	6745222-6745246	25	NZ_CP013597	Rhizobium sp. N741 plasmid pRspN741b, complete sequence	16-40	4	0.84
NZ_CP033364_3	3.1\|6745222\|25\|NZ_CP033364\|CRISPRCasFinder	6745222-6745246	25	NZ_CP013559	Rhizobium phaseoli strain N841 plasmid pRphaN841b, complete sequence	113-137	4	0.84
NZ_CP033364_3	3.1\|6745222\|25\|NZ_CP033364\|CRISPRCasFinder	6745222-6745246	25	NZ_CP013576	Rhizobium phaseoli strain N671 plasmid pRphaN671b, complete sequence	113-137	4	0.84
NZ_CP033364_3	3.1\|6745222\|25\|NZ_CP033364\|CRISPRCasFinder	6745222-6745246	25	NZ_CP013548	Rhizobium phaseoli strain R611 plasmid pRetR611a, complete sequence	113-137	4	0.84
NZ_CP033364_3	3.1\|6745222\|25\|NZ_CP033364\|CRISPRCasFinder	6745222-6745246	25	NZ_CP013528	Rhizobium phaseoli strain R723 plasmid pRphaR723a, complete sequence	113-137	4	0.84
NZ_CP033364_3	3.1\|6745222\|25\|NZ_CP033364\|CRISPRCasFinder	6745222-6745246	25	NZ_CP013533	Rhizobium phaseoli strain R650 plasmid pRphaR650a, complete sequence	113-137	4	0.84
NZ_CP033364_3	3.1\|6745222\|25\|NZ_CP033364\|CRISPRCasFinder	6745222-6745246	25	NZ_CP013538	Rhizobium phaseoli strain R630 plasmid pRphaR630a, complete sequence	113-137	4	0.84
NZ_CP033364_3	3.1\|6745222\|25\|NZ_CP033364\|CRISPRCasFinder	6745222-6745246	25	NZ_CP013543	Rhizobium phaseoli strain R620 plasmid pRphaR620a, complete sequence	113-137	4	0.84
NZ_CP033364_3	3.1\|6745222\|25\|NZ_CP033364\|CRISPRCasFinder	6745222-6745246	25	NZ_CP013564	Rhizobium phaseoli strain N831 plasmid pRphaN831a, complete sequence	113-137	4	0.84
NZ_CP033364_3	3.1\|6745222\|25\|NZ_CP033364\|CRISPRCasFinder	6745222-6745246	25	NZ_CP013501	Rhizobium esperanzae strain N561 plasmid pRspN561a, complete sequence	16-40	4	0.84
NZ_CP033364_3	3.1\|6745222\|25\|NZ_CP033364\|CRISPRCasFinder	6745222-6745246	25	NZ_CP013581	Rhizobium phaseoli strain N261 plasmid pRphaN261a, complete sequence	113-137	4	0.84
NZ_CP033364_3	3.1\|6745222\|25\|NZ_CP033364\|CRISPRCasFinder	6745222-6745246	25	NZ_CP013507	Rhizobium sp. N1341 plasmid pRspN1341b, complete sequence	16-40	4	0.84
NZ_CP033364_3	3.1\|6745222\|25\|NZ_CP033364\|CRISPRCasFinder	6745222-6745246	25	NZ_CP013518	Rhizobium sp. N113 plasmid pRspN113a, complete sequence	16-40	4	0.84
NZ_CP033364_3	3.1\|6745222\|25\|NZ_CP033364\|CRISPRCasFinder	6745222-6745246	25	NZ_CP013570	Rhizobium phaseoli strain N771 plasmid pRphaN771b, complete sequence	113-137	4	0.84
NZ_CP033364_3	3.1\|6745222\|25\|NZ_CP033364\|CRISPRCasFinder	6745222-6745246	25	NZ_CP013491	Rhizobium sp. N6212 plasmid pRspN6212a, complete sequence	16-40	4	0.84
NZ_CP033364_3	3.1\|6745222\|25\|NZ_CP033364\|CRISPRCasFinder	6745222-6745246	25	NZ_CP013513	Rhizobium sp. N1314 plasmid pRspN1314b, complete sequence	16-40	4	0.84
NZ_CP033364_3	3.1\|6745222\|25\|NZ_CP033364\|CRISPRCasFinder	6745222-6745246	25	NZ_CP013496	Rhizobium sp. N621 plasmid pRspN621a, complete sequence	16-40	4	0.84
NZ_CP033364_3	3.1\|6745222\|25\|NZ_CP033364\|CRISPRCasFinder	6745222-6745246	25	NZ_CP013591	Rhizobium sp. N871 plasmid pRspN871a, complete sequence	16-40	4	0.84
NZ_CP033364_3	3.1\|6745222\|25\|NZ_CP033364\|CRISPRCasFinder	6745222-6745246	25	NZ_CP013603	Rhizobium sp. N731 plasmid pRspN731b, complete sequence	16-40	4	0.84
NZ_CP033364_3	3.1\|6745222\|25\|NZ_CP033364\|CRISPRCasFinder	6745222-6745246	25	NZ_CP054028	Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence	103414-103438	4	0.84
NZ_CP033364_3	3.1\|6745222\|25\|NZ_CP033364\|CRISPRCasFinder	6745222-6745246	25	NZ_CP024314	Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence	1988931-1988955	4	0.84
NZ_CP033364_3	3.1\|6745222\|25\|NZ_CP033364\|CRISPRCasFinder	6745222-6745246	25	NZ_CP029232	Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence	1398235-1398259	4	0.84
NZ_CP033364_1	1.1\|386856\|34\|NZ_CP033364\|CRISPRCasFinder	386856-386889	34	NZ_CP011521	Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-4, complete sequence	33915-33948	5	0.853
NZ_CP033364_1	1.1\|386856\|34\|NZ_CP033364\|CRISPRCasFinder	386856-386889	34	MN585989	Mycobacterium phage Superchunk, complete genome	23548-23581	6	0.824
NZ_CP033364_1	1.1\|386856\|34\|NZ_CP033364\|CRISPRCasFinder	386856-386889	34	NZ_CP025986	Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence	1245275-1245308	8	0.765
NZ_CP033364_1	1.1\|386856\|34\|NZ_CP033364\|CRISPRCasFinder	386856-386889	34	NZ_CP022566	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK02, complete sequence	72352-72385	8	0.765
NZ_CP033364_1	1.1\|386856\|34\|NZ_CP033364\|CRISPRCasFinder	386856-386889	34	NZ_CP045074	Paracoccus kondratievae strain BJQ0001 plasmid unnamed1, complete sequence	284629-284662	9	0.735
NZ_CP033364_1	1.1\|386856\|34\|NZ_CP033364\|CRISPRCasFinder	386856-386889	34	NC_016587	Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence	267839-267872	10	0.706
NZ_CP033364_1	1.1\|386856\|34\|NZ_CP033364\|CRISPRCasFinder	386856-386889	34	NZ_CP003988	Streptomyces sp. 769 plasmid pSGZL, complete sequence	129069-129102	10	0.706
NZ_CP033364_1	1.1\|386856\|34\|NZ_CP033364\|CRISPRCasFinder	386856-386889	34	KX641264	Mycobacterium phage LindNT, complete genome	56900-56933	11	0.676

1. spacer 3.1|6745222|25|NZ_CP033364|CRISPRCasFinder matches to NZ_CP035000 (Rhizobium acidisoli strain FH23 plasmid pRapFH23b, complete sequence) position: , mismatch: 3, identity: 0.88

gttttttgcgcatgtcgttgcccca	CRISPR spacer
tgtttttgcgcatgtcgttgccgca	Protospacer
  ******************** **

2. spacer 3.1|6745222|25|NZ_CP033364|CRISPRCasFinder matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 3, identity: 0.88

gttttttgcgcatgtcgttgcccca	CRISPR spacer
gttttttaagcatgtcgttgccccg	Protospacer
*******. ***************.

3. spacer 3.1|6745222|25|NZ_CP033364|CRISPRCasFinder matches to NZ_CP023068 (Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence) position: , mismatch: 3, identity: 0.88

gttttttgcgcatgtcgttgcccca	CRISPR spacer
tttctttacgcatgtcgttgcccca	Protospacer
 **.***.*****************

4. spacer 3.1|6745222|25|NZ_CP033364|CRISPRCasFinder matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 3, identity: 0.88

gttttttgcgcatgtcgttgcccca	CRISPR spacer
gttttttaagcatgtcgttgccccg	Protospacer
*******. ***************.

5. spacer 3.1|6745222|25|NZ_CP033364|CRISPRCasFinder matches to NZ_CP035000 (Rhizobium acidisoli strain FH23 plasmid pRapFH23b, complete sequence) position: , mismatch: 4, identity: 0.84

gttttttgcgcatgtcgttgcccca	CRISPR spacer
tgtttttgcgcatgtcggtgccgca	Protospacer
  *************** **** **

6. spacer 3.1|6745222|25|NZ_CP033364|CRISPRCasFinder matches to NZ_CP020951 (Rhizobium sp. CIAT894 plasmid pRheCIAT894d, complete sequence) position: , mismatch: 4, identity: 0.84

gttttttgcgcatgtcgttgcccca	CRISPR spacer
tggttttgcgcatgtcgttgccgca	Protospacer
   ******************* **

7. spacer 3.1|6745222|25|NZ_CP033364|CRISPRCasFinder matches to NZ_CP023068 (Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence) position: , mismatch: 4, identity: 0.84

gttttttgcgcatgtcgttgcccca	CRISPR spacer
tgtttttgtgcgtgtcgttgcccca	Protospacer
  ******.**.*************

8. spacer 3.1|6745222|25|NZ_CP033364|CRISPRCasFinder matches to NZ_CP050092 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b6, complete sequence) position: , mismatch: 4, identity: 0.84

gttttttgcgcatgtcgttgcccca	CRISPR spacer
tgtttttacgcatgtcgttgccgca	Protospacer
  *****.************** **

9. spacer 3.1|6745222|25|NZ_CP033364|CRISPRCasFinder matches to NC_012586 (Sinorhizobium fredii NGR234 plasmid pNGR234b, complete sequence) position: , mismatch: 4, identity: 0.84

gttttttgcgcatgtcgttgcccca	CRISPR spacer
tttttttaagcatgtcgttgccccg	Protospacer
 ******. ***************.

10. spacer 3.1|6745222|25|NZ_CP033364|CRISPRCasFinder matches to NZ_CP020897 (Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5a, complete sequence) position: , mismatch: 4, identity: 0.84

gttttttgcgcatgtcgttgcccca	CRISPR spacer
tgtttttacgcatgtcgttgccgca	Protospacer
  *****.************** **

11. spacer 3.1|6745222|25|NZ_CP033364|CRISPRCasFinder matches to NZ_CP021026 (Rhizobium sp. TAL182 plasmid pRetTAL182b, complete sequence) position: , mismatch: 4, identity: 0.84

gttttttgcgcatgtcgttgcccca	CRISPR spacer
tgtttttacgcatgtcgttgccgca	Protospacer
  *****.************** **

12. spacer 3.1|6745222|25|NZ_CP033364|CRISPRCasFinder matches to NZ_CP013635 (Rhizobium sp. N324 plasmid pRspN324e, complete sequence) position: , mismatch: 4, identity: 0.84

gttttttgcgcatgtcgttgcccca	CRISPR spacer
tgttttttcgcatgtcgttgccgca	Protospacer
  ***** ************** **

13. spacer 3.1|6745222|25|NZ_CP033364|CRISPRCasFinder matches to NZ_CP013553 (Rhizobium phaseoli strain N931 plasmid pRphaN931a, complete sequence) position: , mismatch: 4, identity: 0.84

gttttttgcgcatgtcgttgcccca	CRISPR spacer
tgtttttacgcatgtcgttgccgca	Protospacer
  *****.************** **

14. spacer 3.1|6745222|25|NZ_CP033364|CRISPRCasFinder matches to NZ_CP013597 (Rhizobium sp. N741 plasmid pRspN741b, complete sequence) position: , mismatch: 4, identity: 0.84

gttttttgcgcatgtcgttgcccca	CRISPR spacer
tgtttttacgcatgtcgttgccgca	Protospacer
  *****.************** **

15. spacer 3.1|6745222|25|NZ_CP033364|CRISPRCasFinder matches to NZ_CP013559 (Rhizobium phaseoli strain N841 plasmid pRphaN841b, complete sequence) position: , mismatch: 4, identity: 0.84

gttttttgcgcatgtcgttgcccca	CRISPR spacer
tgtttttacgcatgtcgttgccgca	Protospacer
  *****.************** **

16. spacer 3.1|6745222|25|NZ_CP033364|CRISPRCasFinder matches to NZ_CP013576 (Rhizobium phaseoli strain N671 plasmid pRphaN671b, complete sequence) position: , mismatch: 4, identity: 0.84

gttttttgcgcatgtcgttgcccca	CRISPR spacer
tgtttttacgcatgtcgttgccgca	Protospacer
  *****.************** **

17. spacer 3.1|6745222|25|NZ_CP033364|CRISPRCasFinder matches to NZ_CP013548 (Rhizobium phaseoli strain R611 plasmid pRetR611a, complete sequence) position: , mismatch: 4, identity: 0.84

gttttttgcgcatgtcgttgcccca	CRISPR spacer
tgtttttacgcatgtcgttgccgca	Protospacer
  *****.************** **

18. spacer 3.1|6745222|25|NZ_CP033364|CRISPRCasFinder matches to NZ_CP013528 (Rhizobium phaseoli strain R723 plasmid pRphaR723a, complete sequence) position: , mismatch: 4, identity: 0.84

gttttttgcgcatgtcgttgcccca	CRISPR spacer
tgtttttacgcatgtcgttgccgca	Protospacer
  *****.************** **

19. spacer 3.1|6745222|25|NZ_CP033364|CRISPRCasFinder matches to NZ_CP013533 (Rhizobium phaseoli strain R650 plasmid pRphaR650a, complete sequence) position: , mismatch: 4, identity: 0.84

gttttttgcgcatgtcgttgcccca	CRISPR spacer
tgtttttacgcatgtcgttgccgca	Protospacer
  *****.************** **

20. spacer 3.1|6745222|25|NZ_CP033364|CRISPRCasFinder matches to NZ_CP013538 (Rhizobium phaseoli strain R630 plasmid pRphaR630a, complete sequence) position: , mismatch: 4, identity: 0.84

gttttttgcgcatgtcgttgcccca	CRISPR spacer
tgtttttacgcatgtcgttgccgca	Protospacer
  *****.************** **

21. spacer 3.1|6745222|25|NZ_CP033364|CRISPRCasFinder matches to NZ_CP013543 (Rhizobium phaseoli strain R620 plasmid pRphaR620a, complete sequence) position: , mismatch: 4, identity: 0.84

gttttttgcgcatgtcgttgcccca	CRISPR spacer
tgtttttacgcatgtcgttgccgca	Protospacer
  *****.************** **

22. spacer 3.1|6745222|25|NZ_CP033364|CRISPRCasFinder matches to NZ_CP013564 (Rhizobium phaseoli strain N831 plasmid pRphaN831a, complete sequence) position: , mismatch: 4, identity: 0.84

gttttttgcgcatgtcgttgcccca	CRISPR spacer
tgtttttacgcatgtcgttgccgca	Protospacer
  *****.************** **

23. spacer 3.1|6745222|25|NZ_CP033364|CRISPRCasFinder matches to NZ_CP013501 (Rhizobium esperanzae strain N561 plasmid pRspN561a, complete sequence) position: , mismatch: 4, identity: 0.84

gttttttgcgcatgtcgttgcccca	CRISPR spacer
tgtttttacgcatgtcgttgccgca	Protospacer
  *****.************** **

24. spacer 3.1|6745222|25|NZ_CP033364|CRISPRCasFinder matches to NZ_CP013581 (Rhizobium phaseoli strain N261 plasmid pRphaN261a, complete sequence) position: , mismatch: 4, identity: 0.84

gttttttgcgcatgtcgttgcccca	CRISPR spacer
tgtttttacgcatgtcgttgccgca	Protospacer
  *****.************** **

25. spacer 3.1|6745222|25|NZ_CP033364|CRISPRCasFinder matches to NZ_CP013507 (Rhizobium sp. N1341 plasmid pRspN1341b, complete sequence) position: , mismatch: 4, identity: 0.84

gttttttgcgcatgtcgttgcccca	CRISPR spacer
tgtttttacgcatgtcgttgccgca	Protospacer
  *****.************** **

26. spacer 3.1|6745222|25|NZ_CP033364|CRISPRCasFinder matches to NZ_CP013518 (Rhizobium sp. N113 plasmid pRspN113a, complete sequence) position: , mismatch: 4, identity: 0.84

gttttttgcgcatgtcgttgcccca	CRISPR spacer
tgtttttacgcatgtcgttgccgca	Protospacer
  *****.************** **

27. spacer 3.1|6745222|25|NZ_CP033364|CRISPRCasFinder matches to NZ_CP013570 (Rhizobium phaseoli strain N771 plasmid pRphaN771b, complete sequence) position: , mismatch: 4, identity: 0.84

gttttttgcgcatgtcgttgcccca	CRISPR spacer
tgtttttacgcatgtcgttgccgca	Protospacer
  *****.************** **

28. spacer 3.1|6745222|25|NZ_CP033364|CRISPRCasFinder matches to NZ_CP013491 (Rhizobium sp. N6212 plasmid pRspN6212a, complete sequence) position: , mismatch: 4, identity: 0.84

gttttttgcgcatgtcgttgcccca	CRISPR spacer
tgtttttacgcatgtcgttgccgca	Protospacer
  *****.************** **

29. spacer 3.1|6745222|25|NZ_CP033364|CRISPRCasFinder matches to NZ_CP013513 (Rhizobium sp. N1314 plasmid pRspN1314b, complete sequence) position: , mismatch: 4, identity: 0.84

gttttttgcgcatgtcgttgcccca	CRISPR spacer
tgtttttacgcatgtcgttgccgca	Protospacer
  *****.************** **

30. spacer 3.1|6745222|25|NZ_CP033364|CRISPRCasFinder matches to NZ_CP013496 (Rhizobium sp. N621 plasmid pRspN621a, complete sequence) position: , mismatch: 4, identity: 0.84

gttttttgcgcatgtcgttgcccca	CRISPR spacer
tgtttttacgcatgtcgttgccgca	Protospacer
  *****.************** **

31. spacer 3.1|6745222|25|NZ_CP033364|CRISPRCasFinder matches to NZ_CP013591 (Rhizobium sp. N871 plasmid pRspN871a, complete sequence) position: , mismatch: 4, identity: 0.84

gttttttgcgcatgtcgttgcccca	CRISPR spacer
tgtttttacgcatgtcgttgccgca	Protospacer
  *****.************** **

32. spacer 3.1|6745222|25|NZ_CP033364|CRISPRCasFinder matches to NZ_CP013603 (Rhizobium sp. N731 plasmid pRspN731b, complete sequence) position: , mismatch: 4, identity: 0.84

gttttttgcgcatgtcgttgcccca	CRISPR spacer
tgtttttacgcatgtcgttgccgca	Protospacer
  *****.************** **

33. spacer 3.1|6745222|25|NZ_CP033364|CRISPRCasFinder matches to NZ_CP054028 (Rhizobium sp. JKLM19E plasmid pPR19E01, complete sequence) position: , mismatch: 4, identity: 0.84

gttttttgcgcatgtcgttgcccca	CRISPR spacer
tgtttttgcgcatgtcattgccgca	Protospacer
  **************.***** **

34. spacer 3.1|6745222|25|NZ_CP033364|CRISPRCasFinder matches to NZ_CP024314 (Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence) position: , mismatch: 4, identity: 0.84

gttttttgcgcatgtcgttgcccca	CRISPR spacer
tgtttttgcgcatgtcgttgtcgca	Protospacer
  ******************.* **

35. spacer 3.1|6745222|25|NZ_CP033364|CRISPRCasFinder matches to NZ_CP029232 (Sinorhizobium fredii CCBAU 45436 plasmid pSF45436b, complete sequence) position: , mismatch: 4, identity: 0.84

gttttttgcgcatgtcgttgcccca	CRISPR spacer
gttttttaagcatgtcgttgcccgc	Protospacer
*******. **************

36. spacer 1.1|386856|34|NZ_CP033364|CRISPRCasFinder matches to NZ_CP011521 (Pandoraea oxalativorans strain DSM 23570 plasmid pPO70-4, complete sequence) position: , mismatch: 5, identity: 0.853

ggcgatg-cgccgccggccaagccggcgacaccgg	CRISPR spacer
-gcggtgccgctgccggccaagccggcgacacccc	Protospacer
 ***.** ***.*********************

37. spacer 1.1|386856|34|NZ_CP033364|CRISPRCasFinder matches to MN585989 (Mycobacterium phage Superchunk, complete genome) position: , mismatch: 6, identity: 0.824

ggcgat-gcgccgccggccaagccggcgacaccgg	CRISPR spacer
-gcgccagcgccgccggccaagccggtgaaaccga	Protospacer
 *** . *******************.** ****.

38. spacer 1.1|386856|34|NZ_CP033364|CRISPRCasFinder matches to NZ_CP025986 (Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence) position: , mismatch: 8, identity: 0.765

ggcgatgcgccgccggccaagccggcgacaccgg	CRISPR spacer
gccgatgcgccgccggccaagctggcgttctacg	Protospacer
* ********************.**** . .  *

39. spacer 1.1|386856|34|NZ_CP033364|CRISPRCasFinder matches to NZ_CP022566 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK02, complete sequence) position: , mismatch: 8, identity: 0.765

ggcga-tgcgccgccggccaagccggcgacaccgg	CRISPR spacer
-tcgaccgcgccgccggcatagccggcgacaaggc	Protospacer
  *** .***********  ***********  *

40. spacer 1.1|386856|34|NZ_CP033364|CRISPRCasFinder matches to NZ_CP045074 (Paracoccus kondratievae strain BJQ0001 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

ggcgatgcgccgccggccaagccggcgacaccgg	CRISPR spacer
cacgatgcgcggacggccaagccggctgccgcgc	Protospacer
 .******** * ************* .*  **

41. spacer 1.1|386856|34|NZ_CP033364|CRISPRCasFinder matches to NC_016587 (Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence) position: , mismatch: 10, identity: 0.706

ggcgatgcgccgccggccaagccggcgacaccgg	CRISPR spacer
ccggatgcgccgcccgccgagccggcgctgcgtg	Protospacer
   *********** ***.******** ..*  *

42. spacer 1.1|386856|34|NZ_CP033364|CRISPRCasFinder matches to NZ_CP003988 (Streptomyces sp. 769 plasmid pSGZL, complete sequence) position: , mismatch: 10, identity: 0.706

ggcgatgcgccgccggccaagccggcgacaccgg	CRISPR spacer
ccgcctacaccgccgcccgagccggcgacaccgc	Protospacer
     *.*.****** **.**************

43. spacer 1.1|386856|34|NZ_CP033364|CRISPRCasFinder matches to KX641264 (Mycobacterium phage LindNT, complete genome) position: , mismatch: 11, identity: 0.676

ggcgatgcgccgccggccaagccggcgacaccgg	CRISPR spacer
ctacctgcgccgacggccaggccggcgacctttg	Protospacer
     ******* ******.********* .. *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3479659 : 3491578

Bordetella_phage(25.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_172373309.1\|3479659_3480619_-	hypothetical protein	J7HXB6	Pseudomonas_phage	3.5e-45	46.2
WP_172373311.1\|3480619_3481621_-	YqaJ viral recombinase family protein	I6NV42	Burkholderia_virus	1.8e-44	39.3
WP_172373313.1\|3481617_3482106_-	hypothetical protein	NA	NA	NA	NA
WP_172373315.1\|3482232_3482856_-	helix-turn-helix transcriptional regulator	A0A248SL93	Klebsiella_phage	1.8e-13	27.4
WP_172373316.1\|3482938_3483172_+	hypothetical protein	NA	NA	NA	NA
WP_172373317.1\|3483490_3485146_+	site-specific DNA-methyltransferase	A0A0K1LLI2	Rhodobacter_phage	2.8e-82	39.5
WP_172373318.1\|3485182_3485671_+	hypothetical protein	NA	NA	NA	NA
WP_172373319.1\|3485671_3487153_+	DEAD/DEAH box helicase	A0A2I5ARD8	Synechococcus_phage	5.1e-83	37.6
WP_172373320.1\|3487164_3487449_+	hypothetical protein	NA	NA	NA	NA
WP_172373321.1\|3487441_3488284_+	hypothetical protein	Q5QF32	Pseudomonas_virus	9.7e-31	37.6
WP_172373323.1\|3488280_3488703_+	hypothetical protein	A0A291LAS4	Bordetella_phage	5.1e-12	36.3
WP_172373325.1\|3488689_3491578_+	hypothetical protein	A0A291LAR9	Bordetella_phage	7.3e-110	35.1

DBSCAN-SWA_2

3503107 : 3574255

Acidithiobacillus_phage(31.82%)

portal,plate,tRNA,integrase,head,capsid,tail,terminase

attL 3531643:3531660|attR 3537835:3537852

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_172373364.1\|3503107_3503656_+\|tail	phage tail protein	NA	NA	NA	NA
WP_172373366.1\|3504110_3505073_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_172373368.1\|3505069_3505969_-	ATP-dependent DNA ligase	A0A076GD42	Sinorhizobium_phage	9.1e-35	34.4
WP_172373370.1\|3506116_3506905_+	hypothetical protein	NA	NA	NA	NA
WP_172373372.1\|3506997_3507798_-	DUF3489 domain-containing protein	NA	NA	NA	NA
WP_172373374.1\|3507888_3508452_+	hypothetical protein	NA	NA	NA	NA
WP_172375103.1\|3508472_3510401_+\|terminase	phage terminase large subunit family protein	K4I3Y9	Acidithiobacillus_phage	7.1e-162	49.4
WP_172373375.1\|3510406_3510622_+	hypothetical protein	NA	NA	NA	NA
WP_172373376.1\|3510621_3512151_+\|portal	phage portal protein	K4I1F2	Acidithiobacillus_phage	1.5e-114	47.7
WP_172373377.1\|3512140_3513511_+	S49 family peptidase	K4HZZ6	Acidithiobacillus_phage	2.1e-59	41.2
WP_172373378.1\|3513535_3514180_+\|head	head decoration protein	NA	NA	NA	NA
WP_172373379.1\|3514212_3515295_+\|capsid	major capsid protein	A0A0A8ILA9	Aurantimonas_phage	3.0e-69	39.7
WP_172373380.1\|3515334_3515637_+	hypothetical protein	NA	NA	NA	NA
WP_172373381.1\|3515639_3516191_+	hypothetical protein	NA	NA	NA	NA
WP_172373383.1\|3516190_3516760_+\|plate	phage baseplate assembly protein V	V5YUM9	Pseudomonas_phage	1.1e-22	32.2
WP_172373385.1\|3516771_3517110_+	GPW/gp25 family protein	D5LGZ4	Escherichia_phage	1.8e-28	54.1
WP_172373387.1\|3517106_3517955_+\|plate	baseplate J/gp47 family protein	A0A219VH98	Ochrobactrum_phage	2.2e-51	42.9
WP_172373389.1\|3517951_3519049_+	hypothetical protein	K4I1F8	Acidithiobacillus_phage	9.4e-26	40.5
WP_172373391.1\|3519051_3520074_+	DUF4815 domain-containing protein	K4ICQ5	Acidithiobacillus_phage	1.6e-51	37.3
WP_172375105.1\|3520179_3522273_+	DUF4815 domain-containing protein	A0A219VHA1	Ochrobactrum_phage	7.1e-107	34.6
WP_172373392.1\|3522282_3523629_+	hypothetical protein	M1TAS6	Escherichia_phage	4.0e-10	44.7
WP_172373393.1\|3523641_3523989_+	hypothetical protein	A0A0F6R5Y6	Sinorhizobium_phage	1.6e-08	32.6
WP_172373395.1\|3524076_3525474_+\|tail	phage tail sheath subtilisin-like domain-containing protein	V5YTI0	Pseudomonas_phage	9.2e-135	58.3
WP_172373397.1\|3525470_3525983_+\|tail	phage major tail tube protein	K4I1G5	Acidithiobacillus_phage	2.2e-38	48.8
WP_172373398.1\|3525995_3526268_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_172373400.1\|3526291_3526408_+\|tail	GpE family phage tail protein	O80316	Escherichia_phage	8.1e-05	55.9
WP_172373401.1\|3526407_3528285_+\|tail	phage tail tape measure protein	A0A0U2BXT9	Paracoccus_phage	8.5e-27	29.8
WP_172375107.1\|3528301_3528688_+\|tail	phage tail protein	A0A193GYE0	Enterobacter_phage	7.1e-29	52.1
WP_172373403.1\|3528753_3528966_+\|tail	tail protein X	NA	NA	NA	NA
WP_172373404.1\|3528968_3530228_+	late control protein	K4HZC6	Acidithiobacillus_phage	4.2e-70	39.8
WP_172373406.1\|3530238_3530499_+	hypothetical protein	NA	NA	NA	NA
WP_172375109.1\|3530485_3531106_+	glycoside hydrolase family protein	L7TM06	Rhizobium_phage	1.2e-86	74.6
WP_172373407.1\|3531203_3531566_+	hypothetical protein	NA	NA	NA	NA
WP_172373410.1\|3531570_3531765_+	hypothetical protein	NA	NA	NA	NA
3531643:3531660	attL	NA	NA	NA	NA
WP_172373412.1\|3531746_3532106_+	DUF1515 family protein	NA	NA	NA	NA
WP_172373414.1\|3532114_3532366_-	hypothetical protein	NA	NA	NA	NA
WP_172373416.1\|3532397_3533564_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_172373418.1\|3533565_3534882_-	hypothetical protein	B4UTW9	Rhizobium_phage	4.1e-28	28.8
WP_172373420.1\|3535172_3535403_-	hypothetical protein	NA	NA	NA	NA
WP_172373422.1\|3535498_3536509_-	nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase	NA	NA	NA	NA
WP_172373423.1\|3536557_3537334_-	adenosylcobinamide-GDP ribazoletransferase	NA	NA	NA	NA
WP_056572934.1\|3537330_3538650_-	cobyrinate a,c-diamide synthase	NA	NA	NA	NA
3537835:3537852	attR	NA	NA	NA	NA
WP_056572931.1\|3538646_3539465_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_056572928.1\|3539461_3540226_-	precorrin-4 C(11)-methyltransferase	NA	NA	NA	NA
WP_172373424.1\|3540222_3540609_-	cobalamin biosynthesis protein	NA	NA	NA	NA
WP_172373425.1\|3540605_3541847_-	precorrin-6y C5,15-methyltransferase (decarboxylating) subunit CbiE	NA	NA	NA	NA
WP_056572921.1\|3541848_3542625_+	cobalt-precorrin-6A reductase	NA	NA	NA	NA
WP_172373426.1\|3542588_3543353_-	precorrin-3B C(17)-methyltransferase	NA	NA	NA	NA
WP_056572915.1\|3543349_3544108_-	precorrin-2 C(20)-methyltransferase	NA	NA	NA	NA
WP_172373427.1\|3544104_3544737_-	precorrin-8X methylmutase	NA	NA	NA	NA
WP_172373428.1\|3544739_3546260_-	precorrin-3B synthase	NA	NA	NA	NA
WP_172373429.1\|3549760_3550813_-	cobalamin biosynthesis protein CobW	NA	NA	NA	NA
WP_172373430.1\|3550815_3551244_-	DUF1636 family protein	NA	NA	NA	NA
WP_172373432.1\|3551518_3552718_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_010910112.1\|3553106_3553472_+	NADH-quinone oxidoreductase subunit A	NA	NA	NA	NA
WP_015317338.1\|3553462_3554044_+	NADH-quinone oxidoreductase subunit B	NA	NA	NA	NA
WP_172373434.1\|3554048_3554654_+	NADH-quinone oxidoreductase subunit C	NA	NA	NA	NA
WP_027044896.1\|3554663_3555854_+	NADH-quinone oxidoreductase subunit D	NA	NA	NA	NA
WP_172373436.1\|3555854_3557135_+	NADH-quinone oxidoreductase subunit E	NA	NA	NA	NA
WP_056572885.1\|3557145_3558450_+	NADH-quinone oxidoreductase subunit NuoF	NA	NA	NA	NA
WP_056572882.1\|3558526_3559222_+	NADH-ubiquinone dehydrogenase	NA	NA	NA	NA
WP_172373438.1\|3559295_3561377_+	NADH-quinone oxidoreductase subunit G	NA	NA	NA	NA
WP_056572876.1\|3561379_3562423_+	NADH-quinone oxidoreductase subunit NuoH	NA	NA	NA	NA
WP_172373440.1\|3562422_3562914_+	NADH-quinone oxidoreductase subunit NuoI	NA	NA	NA	NA
WP_056572873.1\|3563044_3563665_+	NADH-quinone oxidoreductase subunit J	NA	NA	NA	NA
WP_019858930.1\|3563666_3563975_+	NADH-quinone oxidoreductase subunit NuoK	NA	NA	NA	NA
WP_172373442.1\|3563985_3565959_+	NADH-quinone oxidoreductase subunit L	NA	NA	NA	NA
WP_056572867.1\|3565958_3567464_+	NADH-quinone oxidoreductase subunit M	NA	NA	NA	NA
WP_172373444.1\|3567482_3568919_+	NADH-quinone oxidoreductase subunit NuoN	NA	NA	NA	NA
WP_056572862.1\|3568923_3569745_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA
WP_056572858.1\|3569838_3571509_+	ribonuclease J	NA	NA	NA	NA
WP_056572855.1\|3571586_3571991_+	methylmalonyl-CoA epimerase	NA	NA	NA	NA
WP_010910093.1\|3571987_3572272_+	DUF1467 family protein	NA	NA	NA	NA
WP_172373446.1\|3572926_3574255_+\|tRNA	proline--tRNA ligase	A0A2K9L297	Tupanvirus	3.3e-09	27.4

DBSCAN-SWA_3

3784241 : 3792427

uncultured_Mediterranean_phage(85.71%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_056573419.1\|3784241_3785045_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	1.3e-32	33.1
WP_172373538.1\|3785041_3785809_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	3.2e-41	46.2
WP_010909892.1\|3785989_3786211_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	5.1e-08	65.9
WP_065005580.1\|3786241_3786991_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
WP_019858559.1\|3786987_3787863_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	1.5e-50	46.3
WP_056572367.1\|3788054_3789359_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.1e-100	56.6
WP_056572365.1\|3789358_3790117_+	5'/3'-nucleotidase SurE	NA	NA	NA	NA
WP_056572364.1\|3790113_3790767_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	3.6e-17	37.9
WP_172373540.1\|3790894_3792427_+	peptidoglycan DD-metalloendopeptidase family protein	A0A2K9VGT1	Pontimonas_phage	9.1e-11	37.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP033364

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection