CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP053659	Campylobacter jejuni strain 2016-IZSVE-19-111250 chromosome, complete genome	2 crisprs	DEDDh,WYL,cas14j,cas2,cas1,cas9	0	5	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP053659_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053659_1

1337639-1337718

Orphan

Consensus_repeat	Method
TCTTTTTGTTCTTTTAAAGCTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP053659_1

>merge|NZ_CP053659|1|1337639-1337718|CRISPRCasFinder
TCTTTTTGTTCTTTTAAAGCTTCTTTTTTAGCTTTATACTCAGCCTTACTCATATAATCTTTTTGTTCTTTTAAAGCATC

>NZ_CP053659|1|1|1337639-1337718|CRISPRCasFinder
TCTTTTTGTTCTTTTAAAGCTTC	TTTTTTAGCTTTATACTCAGCCTTACTCATATAA
TCTTTTTGTTCTTTTAAAGCATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053659.1\|WP_002855528.1\|1333734_1334406_-\|triose-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
NZ_CP053659.1\|WP_002890764.1\|1340811_1342173_-\|cytochrome-P450	unknown	unknown	gnl\|CDD\|225035
NZ_CP053659.1\|WP_002855470.1\|1336665_1337211_+\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	unknown	unknown	gnl\|CDD\|223985
NZ_CP053659.1\|WP_002855429.1\|1339511_1340048_+\|flagellar-basal-body-associated-protein-FliL	unknown	unknown	gnl\|CDD\|181433
NZ_CP053659.1\|WP_002890768.1\|1343363_1344548_-\|capsule-polysaccharide-modification-protein-KpsS	unknown	unknown	gnl\|CDD\|226092
NZ_CP053659.1\|WP_002855339.1\|1337238_1337565_+\|ribosome-silencing-factor	unknown	unknown	gnl\|CDD\|223870
NZ_CP053659.1\|WP_002855518.1\|1340395_1340815_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053659.1\|WP_002875234.1\|1347112_1347874_-\|NTP-transferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|224134
NZ_CP053659.1\|WP_171849136.1\|1338020_1339409_-\|phosphoglucosamine-mutase-PgmL	unknown	unknown	gnl\|CDD\|100091
NZ_CP053659.1\|WP_002780453.1\|1335607_1336606_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223135
NZ_CP053659.1\|WP_002857989.1\|1326554_1327922_+\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|176469
NZ_CP053659.1\|WP_002779147.1\|1329350_1329575_+\|ferrous-iron-transport-protein-A	unknown	unknown	gnl\|CDD\|224830
NZ_CP053659.1\|WP_002903881.1\|1344544_1346614_-\|capsular-polysaccharide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|226093
NZ_CP053659.1\|WP_002890766.1\|1342169_1343291_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053659.1\|WP_002855324.1\|1334402_1335605_-\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
NZ_CP053659.1\|WP_002852401.1\|1323564_1323927_+\|RidA-family-protein	unknown	unknown	gnl\|CDD\|129116
NZ_CP053659.1\|WP_002903876.1\|1331409_1332903_-\|hydrogenase-small-subunit	unknown	unknown	gnl\|CDD\|224654
NZ_CP053659.1\|WP_002780456.1\|1332906_1333731_-\|enoyl-ACP-reductase-FabI	unknown	unknown	gnl\|CDD\|181416
NZ_CP053659.1\|WP_002825806.1\|1340047_1340395_+\|holo-ACP-synthase	unknown	unknown	gnl\|CDD\|223807
NZ_CP053659.1\|WP_002818256.1\|1346610_1347123_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|235498

Protein	Function_ID	Function_description	E-value
NZ_CP053659.1\|WP_002855528.1\|1333734_1334406_-\|triose-phosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	2.79646e-86
NZ_CP053659.1\|WP_002890764.1\|1340811_1342173_-\|cytochrome-P450	gnl\|CDD\|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	3.49806e-79
NZ_CP053659.1\|WP_002855470.1\|1336665_1337211_+\|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase	gnl\|CDD\|223985	COG1057, NadD, Nicotinic acid mononucleotide adenylyltransferase [Coenzyme metabolism].	3.16494e-57
NZ_CP053659.1\|WP_002855429.1\|1339511_1340048_+\|flagellar-basal-body-associated-protein-FliL	gnl\|CDD\|181433	PRK08455, fliL, flagellar basal body-associated protein FliL; Reviewed.	2.19231e-91
NZ_CP053659.1\|WP_002890768.1\|1343363_1344548_-\|capsule-polysaccharide-modification-protein-KpsS	gnl\|CDD\|226092	COG3562, KpsS, Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane].	0
NZ_CP053659.1\|WP_002855339.1\|1337238_1337565_+\|ribosome-silencing-factor	gnl\|CDD\|223870	COG0799, COG0799, Uncharacterized homolog of plant Iojap protein [Function unknown].	8.97235e-38
NZ_CP053659.1\|WP_002875234.1\|1347112_1347874_-\|NTP-transferase-domain-containing-protein	gnl\|CDD\|224134	COG1213, COG1213, Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane].	5.48264e-74
NZ_CP053659.1\|WP_171849136.1\|1338020_1339409_-\|phosphoglucosamine-mutase-PgmL	gnl\|CDD\|100091	cd03089, PMM_PGM, The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the phosphoglucomutases (PGM1 and PGM2). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NZ_CP053659.1\|WP_002780453.1\|1335607_1336606_-\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	2.96117e-168
NZ_CP053659.1\|WP_002857989.1\|1326554_1327922_+\|adenylosuccinate-lyase	gnl\|CDD\|176469	cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like. This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms.	0
NZ_CP053659.1\|WP_002779147.1\|1329350_1329575_+\|ferrous-iron-transport-protein-A	gnl\|CDD\|224830	COG1918, FeoA, Fe2+ transport system protein A [Inorganic ion transport and metabolism].	1.69416e-22
NZ_CP053659.1\|WP_002903881.1\|1344544_1346614_-\|capsular-polysaccharide-biosynthesis-protein	gnl\|CDD\|226093	COG3563, KpsC, Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane].	0
NZ_CP053659.1\|WP_002855324.1\|1334402_1335605_-\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NZ_CP053659.1\|WP_002852401.1\|1323564_1323927_+\|RidA-family-protein	gnl\|CDD\|129116	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase. This protein was described initially as an inhibitor of protein synthesis intiation, then as an endoribonuclease active on single-stranded mRNA, endoribonuclease L-PSP. Members of this family, conserved in all domains of life and often with several members per bacterial genome, appear to catalyze a reaction that minimizes toxic by-products from reactions catalyzed by pyridoxal phosphate-dependent enzymes. [Cellular processes, Other].	1.81634e-55
NZ_CP053659.1\|WP_002903876.1\|1331409_1332903_-\|hydrogenase-small-subunit	gnl\|CDD\|224654	COG1740, HyaA, Ni,Fe-hydrogenase I small subunit [Energy production and conversion].	4.03495e-157
NZ_CP053659.1\|WP_002780456.1\|1332906_1333731_-\|enoyl-ACP-reductase-FabI	gnl\|CDD\|181416	PRK08415, PRK08415, enoyl-[acyl-carrier-protein] reductase FabI.	0
NZ_CP053659.1\|WP_002825806.1\|1340047_1340395_+\|holo-ACP-synthase	gnl\|CDD\|223807	COG0736, AcpS, Phosphopantetheinyl transferase (holo-ACP synthase) [Lipid metabolism].	3.71491e-40
NZ_CP053659.1\|WP_002818256.1\|1346610_1347123_-\|adenylyl-sulfate-kinase	gnl\|CDD\|235498	PRK05541, PRK05541, adenylylsulfate kinase; Provisional.	1.09566e-100

>NZ_CP053659.1|WP_002855339.1|1337238_1337565_+|ribosome-silencing-factor
MQERIDLIVKILDEKKAEDIKTIDMSEQEYFVKYVIIAATLGERHALSLIDELKTQLKAKGEEFLNIDSSEEWSVIDLGDILIHLLTPEHRGIYNIEELLENLKKGRV
>NZ_CP053659.1|WP_002855470.1|1336665_1337211_+|nicotinate-(nicotinamide)-nucleotide-adenylyltransferase
MKIALFGGSFDPPHNGHNSVILEALEKLDIDKLIIMPTYINPFKQNFSADEKQRFLWVKKLWGHFPKVEICDFETKQKRPVPSIESVKYLYKLYNPSKFYLLIGADHLEKLHLWHDFEKLNSLVEFVIANRNDIEIPKNFKDLKTDKKIASSFIRNTLNTNEVCEEIKDEVKKYYEKLQKN
>NZ_CP053659.1|WP_002780453.1|1335607_1336606_-|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MAVKVAINGFGRIGRCVARIILERNDIELVAINDTTDIELTKYLFKYDTVHGEFKGSVDSEGDDLVVNGKKIKVFKSRNVKDLDFAKHGAQIVLECTGAHLTMAKCQEFIDMGVQKVIMSAPAKDDTPTYVLGVNSELYKGESIISNASCTTNCLGPVCRVLQDNFGIEKGLMTTIHAYTNGQSIIDAKAKDKRRSRAAAQNIIPTSTGAAKAMKLVMPELNGKLHGQSMRVPVIDVSSVDLTAQLSRKVSKDEINEAFRKAAATNLKGILMVDDDERVSSDFITCSYGAIVASDLTQVIADDFIKVIAWYDNEWGYSSRLVDMAVYIANKA
>NZ_CP053659.1|WP_002855324.1|1334402_1335605_-|phosphoglycerate-kinase
MSDIISIKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIPTIRYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLARLLDKEIVMAKDVIGEDAKTKAMNLKAGEILLLENLRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAITKFFDEKHKGAGFLLQKEIDFASNLIKHPARPFVAVVGGSKVSGKLQALTNLLPKVDKLIIGGGMAFTFLKALGYDIGNSLLEEELLEEANKILTKGKNLGVKIYLPVDVVAAPACSQDAPMKFVPAQEIPNGWMGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFSKGSIKMSHYISEGHATSVVGGGDTADVVARAGDADEMTFISTGGGASLELIEGKELPGVKALRSKENE
>NZ_CP053659.1|WP_002855528.1|1333734_1334406_-|triose-phosphate-isomerase
MIFAANLKCNHTRASFKIYAKILNKTMGVKCDDIIVFPPSIAFLENENNFIQGAQNFYPCVNGAFTGELGKEHLDEFGIKCVLIGHSERRALGDEEFIKAKFDFAKEHGYKIVFCIGENLDTKNSGKTLEFLKKQLEIIDLNYEKLIIAYEPIYSIGTGVSAQSTDIAKVLEFLASLTKVPLLYGGSVNENNIKEILSVNHCGGVLIGSAALKVENFIKLIKG
>NZ_CP053659.1|WP_002780456.1|1332906_1333731_-|enoyl-ACP-reductase-FabI
MIMKGKKGLIVGVANNKSIAYGIAKACFDQGAELAFTFLNDALKKRVEPIAQEFNSNFVYELDVNNNEHLDSIAEKIKKDLGEIDFVVHAVAFAPKEALENSFLETSKEAFDIAMQTSVYSLLSLTRAVLPILKDKGSILTLSYLGGVKYVPHYNVMGVAKAALESSVRYLARDLGVKGIRVNAISAGPIKTLAASGIGDFRMILKYNEINSPLKRNVSIEDVGNSAMYLLSDLANGVTGEIHYVDAGYNIMGMGDVEKNEEGQTVLCWDNQKG
>NZ_CP053659.1|WP_002903876.1|1331409_1332903_-|hydrogenase-small-subunit
MAKLSNEELKNILEDRIKKLENSTLKEDKVINEESVKILARHLSLGNEIPALAQRFFQIAPKTKLVWLHLCECTGCSESLLRSELPSFDELIFDFFSLEYHETLMAANGTKAEELLEHVLEEDFILAVEGGVAAIDTFFLTIGAQGESGYEILEKLAAKAKAIFAVGTCSSYGGIQAAYPNPSKTCGISEVLSQKVVNIPGCPPSDINIIATLSFFALFGVLPELDEQNRPVWAYGKCLHDMCERKAKFESGIFAEHFDDEAAKNGACLFKIGCKGPYTYNNCPKVKFNAKTSWPVAAGHGCIACSEKNFWDEFGNYEKPMANIFSYAKLCNEELKQEFFLEEQIKILEQIDFEFESNIKLILQNIAKNKLGALLVENYKKSFEKNYTFIEQNFDENPMPSKDFWKYLEISFILVKGEFLKDKNDFLIAAKNYAFKHASPYDFKLNMNAEKPKLDVSKSFRMTLIYLCGGLDFEGIAYSILKTFGDNITKISSLKAS
>NZ_CP053659.1|WP_002779147.1|1329350_1329575_+|ferrous-iron-transport-protein-A
MTLNELKDGQKAIIVNLNAHKELKNRLLSFGFIKNKNLKKIHSSLKNATIMVELDTSCVILRSDEAKTIEVNLI
>NZ_CP053659.1|WP_002857989.1|1326554_1327922_+|adenylosuccinate-lyase
MTGISVFDHRLLADSWSTQEMRAIFCEQNRIQKWLDVEAALAKAQAKLKIIPKKAADEIAKKAHYKFMDMDFIFAEFKKTKHPLVPTVRGLEKACDNNLGEYVHFRVTTQDIIDTGLVLQFKEAMTLVKSELKAIAKALAKLAKTHKNTAMMGRTLALQALPITFGHKVAIWLSELDRHFERILELEKRLYVGSIVGAVGTKASLSDECNEVEKLTLENLGLEVPNISWQSTRDRFIELGFVLGNINATFNKIAHQLLILSHNEIDEVAEPFGKGQVGSSTMPHKRNPAVSENAVTVSNAFKANLAILSDIERHEHERDGQVWKMEWKLLPEMFLMLSVVLANMKFALSDLEVKKDKMLKNLDTLKGFVLAERVMFALSDHYGKQHAHEIVYENAMLGIEQQKTFKEVLLADTRVSQVLKEKDIDALLDATSYVGYAPKLVDEFLAKIKNSAILK
>NZ_CP053659.1|WP_002852401.1|1323564_1323927_+|RidA-family-protein
MSNYPKAIGPYSAYREVNGLLFISGQLPINPASGEIESSDIKEQTKQSLKNIGAILEENGISYDKVIKTTCFLADINDFVAFNEIYAEFFKAPYPARSAFAVKDLPKKAKVEIEIIAQKG
>NZ_CP053659.1|WP_171849136.1|1338020_1339409_-|phosphoglucosamine-mutase-PgmL
MNLKEKMLDVIFREYDIRGLYGKELNEKSVKAIGFCLGQTMLNKGCKNVSVGYDARYSANELFNYLVSGLNKAGIKIYDIGLVPTPLGYFSLYEGLKFDANVMITGSHNPKDYNGFKITINKESFFGVELKEFSKEVYKHLDDDIEENLEVEKYDILSLYVKFMCEQFSFLKDFNYKFGVDCTNGAAGVVIKPLIKALNLKAHVMFAKPDGQFPNHAPDPTEEENLSAIREFLNQNQDYSLAFAFDGDADRMVALSKTYVFCGDELCYLFAKNIPNPRILGEVKCSKNLFDEVAKFGTIFMGKTGHSNIKKMMKEKDIDLAAEVSGHIFFKHRYFGYDDGIYAFLRALELVYKGFDLESMIKALPKLYTTPEIKIPVNEEEKFKLVEEFQKEIEKGALKGVKSLCEIDGARIDFGDGWALLRASNTSPYLITRFEATSLERAKELESTVFSLFNEIKARLKN
>NZ_CP053659.1|WP_002855429.1|1339511_1340048_+|flagellar-basal-body-associated-protein-FliL
MDEELENEETKKKKGGSLVIIIVILLFVLLLSIMGVIAWLISSSSSDESEVKEAPKEEAKADKPKVSAPTQRGSDFANIGPMYPLDPFTLNLLSDSGSRYVKCTIELEQNSELLKPELDKKVPVIRDIIIRTLTAKTFEEVSTQKGKERLKDELVGKINEILTDGFIKNVYFTDFVVS
>NZ_CP053659.1|WP_002825806.1|1340047_1340395_+|holo-ACP-synthase
MRVGCDIIAISRIEKIHSRHGKNFLDKFLSPKEQILIKNPATLAGLWAAKEAASKALGVGICELCSFFDIEISKDEKNAPKLKYSQKITKDFNITQTSLSISHDNGFAIAIVAIV
>NZ_CP053659.1|WP_002855518.1|1340395_1340815_-|hypothetical-protein
MKRVRTKIRANFRRRVKRTLKGSLKEKLAGTILLCAIVPLAVLGYLFIVIIGTFFNTARARQGVRALDHFVNASLFNGYAWESVSSHAWRERNRKKWARIVIKITDFFQKDHCKRANKREQPVVDFIISRNLDKQTIGK
>NZ_CP053659.1|WP_002890764.1|1340811_1342173_-|cytochrome-P450
MSECPFFPKPYKNKASTLLTFLLKRRSWLDGLYERSYKMQTGYVKMPNFDLYVINDTKEVKRMMVDEVREFPKSAFLHELLSPLLGESIFTTNGEVWKKQRELLRPSFEMTRINKVFNLMSEAVADMMDRFSKYPNHAVIEVDEAMTFITADVIFRTIMSSKLDEEKGKKILNAFVTFQEQSVHTAMRRMFRFPKWLSYVLGDRKRAKAGDVIRQVLSDIIKPRYDMADNAEFEDILGSLLLVVDADTNKRFSFEEILDQVAMLFLAGHETTASSLTWTLYLLSLYPKEQEKAYEEITQVLQGGAIEISHLRQFKYLTNIFKESLRLYPPVGFFAREAKKDTQVRDKLIKKGSGVVIAPWLIHRHEEFWTNPHGFNPSRFEGEYKKDAYLPFGVGERICIGQGFAMQEAILILANILKTYKLELEEGFVPDVVGRLTVRSANGMRIKFSKRKL
>NZ_CP053659.1|WP_002890766.1|1342169_1343291_-|hypothetical-protein
MDREVFYIAGYDPKSYRFYYDLFKKNLKDYSHAFNIKVDLSKIEKNEQFPFFQISCEGVQTTYHFLTWNDIVKKNWSENYKDALADCYSFFRIYTITGLFIKFGKESIYQLITGYYPFFYVLFSLLFSLVVAFGSFAFLQNYMHFSLAIIIGCFLGFLLNHFLFKLGKKLAVFWIARICAFCATWQDKKTGTMQERIKLFANTIVDKLKQNENKQDYELVLVAHSVGTIVCIEVLECILRQNLDLSLLHKLKILTLGECIPLVSYQKKADEFRKKLEFVSRFDLKWYDYTSIIDGACFPQVDFFRTSGVNAKFTPPFLSAKFHTLYEKHEYKKIKRDKNKAHFLYLYSISVKGDYDFFSFIIMPKFLEEKVKI
>NZ_CP053659.1|WP_002890768.1|1343363_1344548_-|capsule-polysaccharide-modification-protein-KpsS
MRFSTKIKKEFSGKNVLLLQGPVGNFFHHLAIKMKKKQTKVFKLNFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQSKKIDAILMYNDCRIIHTKAIKVAKELGIEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKFMAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIYNLEKKYFLAILQVYSDTQIKYHYKKSIEHFIEETILSFANHARAKSYLVFKHHPMDRGYKNYSKLINDLSQKYHVEGRVLYVHDTHLPVLLRKALGCITINSTVGLSAILEGCPTKVCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPVLVCNFKKYLLQTNQFNGNFYKNFFLDK
>NZ_CP053659.1|WP_002903881.1|1344544_1346614_-|capsular-polysaccharide-biosynthesis-protein
MKHYSISKKLIANVRNFYTISLYKKNSKINKDDLFLGWGRKKSGLKAINLAKKYKAKFILLEDGFIRSLNLGVENSPSFSMVKDDIGIYYDATAPSKLENLLNTYEFKDEEIKQAKKAIELIKKYKISKYNNNLDIPDDYFQKDEKRVLIITQTANDASLEFGLAKGFKTVDMIKDAIKENPKSKIYIKIHPDVLSGKKQSDLDINSLPKECILITENFNPVALLEFFDKVYTKTSGMGFEALMQECECICYGMPFYAGWGLTKDKLECKRRMQKRSLEEVFYVAYILYAEYFNPYLNQKSNIFDTIQTLAKYKDIEKANSNRLFFFGFSKWKRKFVKPFFIAKNNEIIFLDFLDCLKNIQLKENDKFFIWGKRIDYNALKTTLIKKAQDENLLHFTPKISLVEDGFIRSISLGSDLTRPFSLIVDDKGLYIDPNKASKLEELLQNEIFDENMLNRAKNIIKILLENRFSKYNGLKHEDLKINVKTGQKIILIPAQVEDDASMILGGFGLSTLDLLKEVRSKNQDAYIIFKPHPDVLSGNRVGLKDETLILEFCDEIVKDCSIDSAIKIADEIHTITSTSGFDALLRAKKVFTYGMPFYAGWGLTKDKYRCERRTRKLSLEELVAGALIAYPRYINPKTKTLCEIEVCLDIMLNLQKAYFSKKYIKLAIDFKTFMLRKIRRFYEFLAKK
>NZ_CP053659.1|WP_002818256.1|1346610_1347123_-|adenylyl-sulfate-kinase
MINSPYIIWLTGLAGSGKTTIGQALYEKLKLKYKNLIYLDGDELREILGHYAYDRQGRIDMALKRAKFAKFLNDQGMMVIVTTISMFNEIYDYNRKQLKNYYEIYIECDMHELIQRDQKGLYTKALNKEIDNVVGVDIEFDKPEADLVINNSCRNNLEEKVELIIKKLAL
>NZ_CP053659.1|WP_002875234.1|1347112_1347874_-|NTP-transferase-domain-containing-protein
MNAIILAAGFGSRLMPLTKDQPKCMVEYKNKKIIDYEIEALKSAGINEIAVVGGYLNEVLKNYLNKYDIEHFFINSKYDKTNMVHTFFCAKDFILKCIEEKQDLIISYADIVYFQDCVQKLINAKEELAIVVDKSWRKLWSKRFANPLEDAETLKMTNGYIIELGKKANAYDEIEAQYIGLFKFSYQFLSEVIAFYGMLDRDILYDNKNFENMYMTSFLQALIEKYNNAKAVEIDGNWCEIDFMSDLEVQIDK

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Crispr_ID: NZ_CP053659_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053659_2

1499929-1500096

TypeII

Consensus_repeat	Method
GTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA	PILER-CR
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	CRISPRCasFinder

2 spacers

cas2,cas1,cas9

The CRISPR arrays of NZ_CP053659_2

>merge|NZ_CP053659|2|1499929-1500096|PILER-CR,CRISPRCasFinder
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATATAATTTCTAATTTCATTTATAACCTTTCAGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTAGTAGCTAAGAATAAAATAAGAAACACTGGTTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA

>NZ_CP053659|2|1|1499929-1500096|PILER-CR
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATAT	AATTTCTAATTTCATTTATAACCTTTCAG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATTA	GTAGCTAAGAATAAAATAAGAAACACTGG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAATA

>NZ_CP053659|2|2|1499929-1500095|CRISPRCasFinder
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	ATAATTTCTAATTTCATTTATAACCTTTCAG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT	TAGTAGCTAAGAATAAAATAAGAAACACTGG
TTTTAGTCCCTTTTTAAATTTCTTTATGGTAAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053659.1\|WP_171849144.1\|1501550_1504514_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
NZ_CP053659.1\|WP_002876343.1\|1504721_1504904_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182621
NZ_CP053659.1\|WP_002851546.1\|1510402_1510852_-\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854
NZ_CP053659.1\|WP_002779488.1\|1497945_1498167_+\|MoaD/ThiS-family-protein	unknown	unknown	gnl\|CDD\|224888
NZ_CP053659.1\|WP_002890120.1\|1507246_1507852_+\|dephospho-CoA-kinase	unknown	unknown	gnl\|CDD\|234620
NZ_CP053659.1\|WP_079005335.1\|1494113_1494827_-\|molecular-chaperone-TorD-family-protein	unknown	unknown	gnl\|CDD\|225916
NZ_CP053659.1\|WP_171823035.1\|1500239_1500653_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_CP053659.1\|WP_002876348.1\|1507848_1508598_+\|diaminopimelate-epimerase	unknown	unknown	gnl\|CDD\|234768
NZ_CP053659.1\|WP_002851174.1\|1489576_1490509_-\|formate-dehydrogenase-subunit-gamma	unknown	unknown	gnl\|CDD\|130645
NZ_CP053659.1\|WP_002851264.1\|1490505_1491147_-\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|319893
NZ_CP053659.1\|WP_002858431.1\|1495130_1496279_-\|carboxynorspermidine-decarboxylase	unknown	unknown	gnl\|CDD\|273414
NZ_CP053659.1\|WP_002781229.1\|1498167_1498614_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	unknown	unknown	gnl\|CDD\|223391
NZ_CP053659.1\|WP_002851155.1\|1509300_1510338_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224292
NZ_CP053659.1\|WP_002858151.1\|1498617_1499808_+\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|223380
NZ_CP053659.1\|WP_002851407.1\|1508572_1509304_+\|glucosaminidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|225539
NZ_CP053659.1\|WP_002876346.1\|1506196_1507186_-\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
NZ_CP053659.1\|WP_002819068.1\|1500663_1501554_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NZ_CP053659.1\|WP_002851537.1\|1493947_1494139_-\|twin-arginine-translocation-signal-domain-containing-protein	unknown	unknown	gnl\|CDD\|236534
NZ_CP053659.1\|WP_002868028.1\|1496402_1497944_+\|multicopper-oxidase-CueO	unknown	unknown	gnl\|CDD\|225043
NZ_CP053659.1\|WP_010891941.1\|1491143_1493948_-\|formate-dehydrogenase-subunit-alpha	unknown	unknown	gnl\|CDD\|239153

Protein	Function_ID	Function_description	E-value
NZ_CP053659.1\|WP_171849144.1\|1501550_1504514_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
NZ_CP053659.1\|WP_002876343.1\|1504721_1504904_+\|hypothetical-protein	gnl\|CDD\|182621	PRK10654, dcuC, C4-dicarboxylate transporter DcuC; Provisional.	0.000391506
NZ_CP053659.1\|WP_002851546.1\|1510402_1510852_-\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	5.92874e-51
NZ_CP053659.1\|WP_002779488.1\|1497945_1498167_+\|MoaD/ThiS-family-protein	gnl\|CDD\|224888	COG1977, MoaD, Molybdopterin converting factor, small subunit [Coenzyme metabolism].	1.67964e-11
NZ_CP053659.1\|WP_002890120.1\|1507246_1507852_+\|dephospho-CoA-kinase	gnl\|CDD\|234620	PRK00081, coaE, dephospho-CoA kinase; Reviewed.	3.96096e-68
NZ_CP053659.1\|WP_079005335.1\|1494113_1494827_-\|molecular-chaperone-TorD-family-protein	gnl\|CDD\|225916	COG3381, TorD, Uncharacterized component of anaerobic dehydrogenases [General function prediction only].	0.000778983
NZ_CP053659.1\|WP_171823035.1\|1500239_1500653_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	2.7568e-55
NZ_CP053659.1\|WP_002876348.1\|1507848_1508598_+\|diaminopimelate-epimerase	gnl\|CDD\|234768	PRK00450, dapF, diaminopimelate epimerase; Provisional.	1.04959e-92
NZ_CP053659.1\|WP_002851174.1\|1489576_1490509_-\|formate-dehydrogenase-subunit-gamma	gnl\|CDD\|130645	TIGR01583, Formate_dehydrogenase_cytochrome_b556_subunit, formate dehydrogenase, gamma subunit. This model represents the gamma chain of the gamma proteobacteria (and Aquifex aolicus) formate dehydrogenase. This subunit is integral to the cytoplasmic membrane, consisting of 4 transmembrane helices, and receives electrons from the beta subunit. The entire E. coli formate dehydrogenase N (nitrate-inducible form) has been crystallized. The gamma subunit contains two cytochromes, heme b(P) and heme b(C) near the periplasmic and cytoplasmic sides of the membrane respectively. The electron acceptor quinone binds at the cytoplasmic heme histidine ligand. NiFe-hydrogenase and thiosulfate reductase contain homologous gamma subunits, and these can be found scoring in the noise of this model. [Energy metabolism, Anaerobic, Energy metabolism, Electron transport].	4.78832e-90
NZ_CP053659.1\|WP_002851264.1\|1490505_1491147_-\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|319893	cd16371, DMSOR_beta_like, uncharacterized subfamily of DMSO Reductase beta subunit family. This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.	6.18245e-57
NZ_CP053659.1\|WP_002858431.1\|1495130_1496279_-\|carboxynorspermidine-decarboxylase	gnl\|CDD\|273414	TIGR01047, carboxynorspermidine_decarboxylase, carboxynorspermidine decarboxylase. This protein is related to diaminopimelate decarboxylase. It is the last enzyme in norspermidine biosynthesis by an unusual pathway shown in Vibrio alginolyticus. [Central intermediary metabolism, Polyamine biosynthesis].	0
NZ_CP053659.1\|WP_002781229.1\|1498167_1498614_+\|molybdenum-cofactor-biosynthesis-protein-MoaE	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	1.4187e-43
NZ_CP053659.1\|WP_002851155.1\|1509300_1510338_-\|ATP-binding-protein	gnl\|CDD\|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	1.54942e-34
NZ_CP053659.1\|WP_002858151.1\|1498617_1499808_+\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|223380	COG0303, MoeA, Molybdopterin biosynthesis enzyme [Coenzyme metabolism].	2.37307e-143
NZ_CP053659.1\|WP_002851407.1\|1508572_1509304_+\|glucosaminidase-domain-containing-protein	gnl\|CDD\|225539	COG2992, Bax, Uncharacterized FlgJ-related protein [General function prediction only].	2.12305e-102
NZ_CP053659.1\|WP_002876346.1\|1506196_1507186_-\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
NZ_CP053659.1\|WP_002819068.1\|1500663_1501554_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	2.92431e-121
NZ_CP053659.1\|WP_002851537.1\|1493947_1494139_-\|twin-arginine-translocation-signal-domain-containing-protein	gnl\|CDD\|236534	PRK09476, napG, quinol dehydrogenase periplasmic component; Provisional.	0.00441722
NZ_CP053659.1\|WP_002868028.1\|1496402_1497944_+\|multicopper-oxidase-CueO	gnl\|CDD\|225043	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism].	1.19169e-120
NZ_CP053659.1\|WP_010891941.1\|1491143_1493948_-\|formate-dehydrogenase-subunit-alpha	gnl\|CDD\|239153	cd02752, MopB_Formate-Dh-Na-like, Formate dehydrogenase N, alpha subunit (Formate-Dh-Na) is a major component of nitrate respiration in bacteria such as in the E. coli formate dehydrogenase N (Fdh-N). Fdh-N is a membrane protein that is a complex of three different subunits and is the major electron donor to the nitrate respiratory chain. Also included in this CD is the Desulfovibrio gigas tungsten formate dehydrogenase, DgW-FDH. In contrast to Fdh-N, which is a functional heterotrimer, DgW-FDH is a heterodimer. The DgW-FDH complex is composed of a large subunit carrying the W active site and one [4Fe-4S] center, and a small subunit that harbors a series of three [4Fe-4S] clusters as well as a putative vacant binding site for a fourth cluster. The smaller subunit is not included in this alignment. Members of the MopB_Formate-Dh-Na-like CD belong to the molybdopterin_binding (MopB) superfamily of proteins.	0

>NZ_CP053659.1|WP_002858151.1|1498617_1499808_+|molybdopterin-molybdotransferase-MoeA
MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKAPKNQPEFPTSAMDGYAIKFEDQDKPLKILGLTPAGTMPQFSVQNGTCVKTFTGSLMSEGSDTLVPVENIRIENNTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTRLNYSEIALLAELGFFHISVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFPLLKDDEKATFSTLESALQSCDILVTTGGVSMGDFDFLKKAIKEYEIIIDKADIKPGRHIKIAKANEKFIIALPGFPYSAMVMFNLYTREILNSWLLQPKDYICKAFLQGSYKKKTPYLEFVACNIEFKNGRILANLEGKKEGSSAIINNLNNKAALMVVPKECEMLENESLVDIIFMP
>NZ_CP053659.1|WP_002781229.1|1498167_1498614_+|molybdenum-cofactor-biosynthesis-protein-MoaE
MKHFTLYQGSLDIPKIYSQWYEFSKDKNCGALLTFCGIVREEGGIEALSFDIYESLLKKWFDEWQKRVDFDGISLLFAHSIGDVAIHESSYFAGILSKQRKLGLKLLNEFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLKG
>NZ_CP053659.1|WP_002779488.1|1497945_1498167_+|MoaD/ThiS-family-protein
MVKVEFLGPINKENLELEVKNLKELKEILQKDESLKEWLELCAVSLNDEIIFDENTKLKDGDKIALLPPVCGG
>NZ_CP053659.1|WP_002868028.1|1496402_1497944_+|multicopper-oxidase-CueO
MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINHDLDTSFINFAPKNLKLLDPKQFPQGEILKALPLLKNESKEKNIFRATLEIKENHIELIKGKKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPVPPDQDGSPHDPILAGEERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALSHLKEKDLMISDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPKIKLATNERIRIYNATAARYLNLRIQGAKFILVGTDGGLIEKAIYKEELFLSPASRVEVLIDAPKDGNFKLESAYYDRDKMMVKEESNTLFLASISLKKEKLELPKNLKIFKPLEEPKEFKEIIMSEDHMQMHGMMGKSENELKIALASMFLINGKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFELISSKLNGKVQKAEFRAFRDTINVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGNLEVKE
>NZ_CP053659.1|WP_002858431.1|1495130_1496279_-|carboxynorspermidine-decarboxylase
MFYEKIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFAFSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIGEIASLSHHIVFNSLAQFHKFQAKTQKNSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLSTIEGLHFHALCEESAGALEAVLKVFEEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIALCKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIMPYTSEVLNARILATRENEKISDLKESEFSYLLTGNTCLAGDVMGEYAFDKKLKIGDKIVFLDQIHYTIVKNTTFNGIRLPNLMLLNAKNELQMIREFSYKDYSLRN
>NZ_CP053659.1|WP_079005335.1|1494113_1494827_-|molecular-chaperone-TorD-family-protein
MEALMDLEKLRLARSLYYQCLGELFVFSFSEERLSKLQEYLKTMQECLFDENLKSNFDILLKHLDDENSIQAFFKEYDLLFLSLKNSIPTTFSYIEEGFENSNPLLCVRQILVKSKIRRNEKFFKESEDSVGFCLLLMSEFLRQNEDDLAKELFEKVINKSIDEFLGDVFMNKNANLYKEIASIASAFMEFERLCFEVEKPAKINSKKVQNDLSRSEFLRREANKQRRTREKSQGIS
>NZ_CP053659.1|WP_002851537.1|1493947_1494139_-|twin-arginine-translocation-signal-domain-containing-protein
MKNRREFLKKSAFALGAAGVLGSTTLALAKDEERKDLVKGKSKKKEVLFQRSANWENYYIKAE
>NZ_CP053659.1|WP_010891941.1|1491143_1493948_-|formate-dehydrogenase-subunit-alpha
MSSVGENIKLTRRSFLKMAALSSLATPLLARSETLREASADELKEAYEGSKKVKTVCTACSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCCKGSDMIDMVRSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKLNNEQAYYIRKFAAFFGTNNVDHQARIUHSATVAGVANTFGYGAMTNHLGDIQRSKCIIIIGANPAVNHPVGFRHFLKAKEKGAKLIVVDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIFDEGLEDTKYLDERVFGIDKIREEAAKWTVEEVENVTGISKELLVQITHEVAKNKPTTLIWAMGLTQHTVGTSNTRLAPIVQMVLGNIGKFGGGVNILRGHDNVQGASDMACLSENLPGYYPLNEATWRYYAKIWGVDYEWLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDAIDNAGTPLKALVVMGNGITSTAQQVKVKEGLEALELLVLADPFVNEAGIIAERKDGIYLLPAATQFETSGSVTATNRSGQWRFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTLRDEKGEIVWPENATREIAKAVRSIGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGEYYGLPWPCWSDKHPGSPVLYNTDIEVAKGGMGFRNNFGLEYEGESLLAKNAPLNSPIDTGYPQITKDNIEKVLGITLSAQEKEKMGSTWSYDDSNIIATKCIEKGIVPYGNAKARAVVWTFKDKIPLHREPLHSPRNDLVQKYPSFEDQKALYRVDTKFVSVQQAKDYSKEFPLNLVTARLVNLNGAGMENRASMYLTRLTPEMFCEINPELAKEQDIKAGDMIWVHSPEGTKIHVRVKVNPGVAKDMIFLPFHFTGVMQGVDLTHNFPEGTKPYASGESANTVTNYGYDIMCQIPETKGGLCRISKDGK
>NZ_CP053659.1|WP_002851264.1|1490505_1491147_-|4Fe-4S-dicluster-domain-containing-protein
MSKVNFANLEKERLKFFCDNERCIDCNGCAVACDEAHELPIHIRRRRVITLNEGIQGKEVSTSISCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCGYCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPEATNSEKERELYGQNRIAEGKVPVCAAMCSTKALLVGESSKIEEIYHNRLMNRNYGIPNPSESLEWKIAYTGKERL
>NZ_CP053659.1|WP_002851174.1|1489576_1490509_-|formate-dehydrogenase-subunit-gamma
MRKVFVTLLLSVVSLFAYGSERMGQDTQIWDFHRITNIPNYDTFGKLWTTLQGEYIATIALIAVIAVLSAFALHYMVIGPKQFSHDGKKIYAFTLFERLFHFIAAISWVILVPTGFVMMFGEVFGGGVFVRVCKNLHAFATILFIISIIPMFLCWIKRMLPASYDIRWMMIVGGYLSKIKRPVPAGKFNFGQKSWYYIAVFGGFLMIITGGFMYFLDFNSTAIQGLFGLTQIELLRISAIVHNFLGIVCAVFFGVHIYMAVFAIKGSIHSMISGYKEEEEVYILHSYWYKELSNKKQIEPSFSYDPNVKI
>NZ_CP053659.1|WP_171823035.1|1500239_1500653_-|CRISPR-associated-endonuclease-Cas2
MRVLLMFDVPTKSKKEQKLASKFRNNLIKLGYFMLQFSVYMRICKGLSSAKSSIENVKKILPPYGNVRALIITEKQFDKMELLLGGIVFNEKVNNETNVTLFDIDSHGEFKYKNSNNEEIQINKKQEKYHQQNLFEF
>NZ_CP053659.1|WP_002819068.1|1500663_1501554_-|type-II-CRISPR-associated-endonuclease-Cas1
MSYDEAFKTLLISSNAKLNLELNHLVIKQDENIAKLFLKDINIIVLESLQVSLSSALFNAFARHKIILLTCDETHSINGVFTPFLGHFQSAKIAKEQMNVSAQKKAILWQKIIKNKILNQAFVLKKHNKIEQSNELINLAKKVSLNDSKNIEAVAAALYFKTLFGVSFSRDELCFENSALNYGYAIIRACIIRAVCISGLLPWLGIKHDNIYNSFALCDDLIEVFRASVDDCVLKLKGESEFLSKDDKRALIGNLQSKINFDGQNYPLNRAINHYVANFKNALLYEDELKIVKFDD
>NZ_CP053659.1|WP_171849144.1|1501550_1504514_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MARILAFDIGISSIGWAFSENDELKDCGVRIFTKAENPKTGESLALPRRLARSARKRLARRKARLNHLKHLIANEFKLNYEDYQSFDESLAKAYKGSLISPYELRFRALNELLSKQDFARVILHIAKRRGYDDIKNNGDEEKSEILKAIKQNEEKLVNYQSVGEYLYKEYFQKFKENSKEFINVRNKKESYERCIAQSFLKDELKLIFQKQREFGFSFSKKFEEEVLSVAFYKRALKDFSHLVGNCSFFTDEKRAPKNSPLAFMFVALTRIINLLNNLKNTEGILYTKDDLNTLLNEVLKNGTLTYKQTKKLLGLSDDYEFKGEKGTYFIEFKKYKEFIKALGEHNLSQDNLNEIAKDITLIKDEIKLKKALAKYDLNQNQIDSLSKLEFKDHLNISFKALKLITPLMLEGKKYDEAYNELNLKVAINEDKKDFLPAFNETYYKDEVTNPVVLRAIKEYRKVLNALLKKYGKVHKINIELAREVGKNHSQRAKIEKEQNENYKAKKDAELECEKLGLKINSKNILKLRLFKEQKEFCAYSGEKIKISDLQDEKMLEIDHIYPYSRSFDDSYMNKVLVFTKQNQEKLNQTPFEAFGNDSAKWQKIEVLAKNLPTKKQKRILDKNYKDKEQKDFKDRNLNDTRYIARLVLNYTKDYLDFLPLSDDENTKLNDTQKGSKVHVEAKSGMLTSALRHTWGFSAKDRNNHLHHAIDAVIIAYANNSIVKAFSDFKKEQESNSAELYAKKISELDYKNKRKFFEPFSGFRQKVLDKIDEIFVSKPERKKPSGALHEETFRKEEEFYQSYGGKEGVLKALELGKIRKVNGKIVKNGDMFRVDIFKHKKTNKFYAVPIYTMDFALKILPNKAVVQGKDKKSGLIKDWILMDENYEFCFSLYKDSLILIQTKDMQEPELVYFNAFTSSTVSLIVSKHDNKFETLSKNQKILFKNANEKEVIAKSIGIQNLKVFEKYIVSALGEVTKAEFRQREDFKK
>NZ_CP053659.1|WP_002876343.1|1504721_1504904_+|hypothetical-protein
MPIFMICSTLLAVIVVAYYILKKYNPIFVFFLSGIILLIFAFYITGTPIPKTPSREYTSF
>NZ_CP053659.1|WP_002876346.1|1506196_1507186_-|phosphoribosylformylglycinamidine-cyclo-ligase
MKISYEDAGVSIDNGNTFVEAIKPLVKETFNDNVVGGIGSFAGAFRMPSGFKKPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFLDYYATAKLEVEVAKAVVSGIAKGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMAEEDEIDRSKFVKNGDILLALSSSGLHSNGYSLARKVLFESLKLKFDDKIEGKNLIDILLEPTRIYVRDFLTLKPYISALAHITGGGLVENLPRVLPRGMGATIRKHHLKTPEIFYTIGQAVEESEMYRSFNMGVGLVMVVDPSNVSKVLENSDAFIIGEICINEGIVLE
>NZ_CP053659.1|WP_002890120.1|1507246_1507852_+|dephospho-CoA-kinase
MKNAFFVTASIACGKSTFIEIANSLDFKSISADKIAHKILDENALELEKIFSPFSLKNLLTKEKKIDRKILGKIVFNNKEAKKILENFTHPKIRAKILEQIQILDKENKAFFVEIPLFFESGAYENLGKVIVIYTPKELSLKRIMQRDKLSLEAAKARLDSQIDIEEKLKKADFIIKNTNSYADFRQECVKVIQEISKGKM
>NZ_CP053659.1|WP_002876348.1|1507848_1508598_+|diaminopimelate-epimerase
MKFYKYCASGNDFVITNADRKEDRSALAKELCNRYEGIGADGFIVILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGVIKAKVNQDKVEVSLGKIKSVQNTFEELGKTWQLCNTGVPHLVHFCQNLDEFDTMLCQKMRQKYNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPKSGEEVGFAYKNEELFFEGKVKYCFEANYNFF
>NZ_CP053659.1|WP_002851407.1|1508572_1509304_+|glucosaminidase-domain-containing-protein
MKPIIIFFSLFLIPLFADDLKSGFGEEYYKLDIDQKRQIFFIKMNEMFDQSFKKIEQERAFIEAFFKDAYKTGFRTSNQINLEKLITIKNKYRIENLYDFAEYKKRIQKIPKSMGIAQALVESATGTSRFAREANNLFGEWTWGEKGLIPDLRHPDKKHKIKIFDSLQDSVDSYVLNLNRHFAYEKFRDARAKFESEGKEITGLEAIKTLDSYSERKGYYINLITKIIKRYNLEKYDTNSNNT
>NZ_CP053659.1|WP_002851155.1|1509300_1510338_-|ATP-binding-protein
MKVLNFFYENHPKFEVSYERKNQISKPNIIIKGPRFCGKKTLIFNFLSQFKASEILFLDLYDTRFEKQSLERLADFLNENLQIKILCLYNLDFIPNLEKINIPIILSTNIKDLNVNGFEELELDYFDFEEFISVSKKNLPINNLVGLFLQSGRSKFGEKNILLRQSFTLLELEILKYLALNLGQQISISKIFIELKKRLKTSKDSVYQAIKKLENTYVIYTLKHDEKKLQKIYFKDFGLRNNLCISKDFSHLFENLVLSELFKFKEEFFYNKYFNFYSQISKIAYISSPTLDIDLIKLRAKKILPKALELGIFHVIFITLSSEDNFFEQGVKFEVISFDKFSLGF
>NZ_CP053659.1|WP_002851546.1|1510402_1510852_-|DNA-starvation/stationary-phase-protection-protein
MSVTKQLLQMQADAHHLWVKFHNYHWNVKGLQFFSIHEYTEKAYEEMAELFDSCAERVLQLGEKAITCQKVLMENAKSPKVAKDCFTPLEVIELIKQDYEYLLAEFKKLNEAAEKESDTTTAAFAQENIAKYEKSLWMIGATLQGACKM

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP053659_2	2.1\|1499966\|29\|NZ_CP053659\|PILER-CR	1499966-1499994	29	MN530981	Campylobacter phage DA10, complete genome	33857-33885	0	1.0
NZ_CP053659_2	2.2\|1500032\|29\|NZ_CP053659\|PILER-CR	1500032-1500060	29	MN530981	Campylobacter phage DA10, complete genome	20527-20555	1	0.966
NZ_CP053659_2	2.3\|1499964\|31\|NZ_CP053659\|CRISPRCasFinder	1499964-1499994	31	MN530981	Campylobacter phage DA10, complete genome	33856-33886	1	0.968
NZ_CP053659_2	2.4\|1500030\|31\|NZ_CP053659\|CRISPRCasFinder	1500030-1500060	31	MN530981	Campylobacter phage DA10, complete genome	20526-20556	1	0.968
NZ_CP053659_2	2.1\|1499966\|29\|NZ_CP053659\|PILER-CR	1499966-1499994	29	NZ_CP017864	Campylobacter jejuni strain IF1100 plasmid pCJDM100, complete sequence	3354-3382	5	0.828
NZ_CP053659_2	2.3\|1499964\|31\|NZ_CP053659\|CRISPRCasFinder	1499964-1499994	31	MN855683	Siphoviridae sp. isolate 326, complete genome	2601-2631	5	0.839
NZ_CP053659_2	2.1\|1499966\|29\|NZ_CP053659\|PILER-CR	1499966-1499994	29	MT741943	Acinetobacter phage Meroveus, complete genome	17161-17189	6	0.793
NZ_CP053659_2	2.1\|1499966\|29\|NZ_CP053659\|PILER-CR	1499966-1499994	29	MT409116	Acinetobacter phage Octan, complete genome	17034-17062	6	0.793
NZ_CP053659_2	2.1\|1499966\|29\|NZ_CP053659\|PILER-CR	1499966-1499994	29	NZ_CP027787	Tetragenococcus koreensis strain KCTC 3924 plasmid pTK, complete sequence	10567-10595	6	0.793
NZ_CP053659_2	2.1\|1499966\|29\|NZ_CP053659\|PILER-CR	1499966-1499994	29	MN855683	Siphoviridae sp. isolate 326, complete genome	2602-2630	6	0.793
NZ_CP053659_2	2.2\|1500032\|29\|NZ_CP053659\|PILER-CR	1500032-1500060	29	MT774379	CrAssphage cr118_1, complete genome	84170-84198	6	0.793
NZ_CP053659_2	2.1\|1499966\|29\|NZ_CP053659\|PILER-CR	1499966-1499994	29	NZ_CP014569	Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp1, complete sequence	3321-3349	7	0.759
NZ_CP053659_2	2.2\|1500032\|29\|NZ_CP053659\|PILER-CR	1500032-1500060	29	MT074146	Bacteroides phage SJC03, complete genome	132713-132741	7	0.759
NZ_CP053659_2	2.3\|1499964\|31\|NZ_CP053659\|CRISPRCasFinder	1499964-1499994	31	NZ_CP017864	Campylobacter jejuni strain IF1100 plasmid pCJDM100, complete sequence	3353-3383	7	0.774
NZ_CP053659_2	2.3\|1499964\|31\|NZ_CP053659\|CRISPRCasFinder	1499964-1499994	31	MH707430	Bacillus phage BSP7, complete genome	43758-43788	7	0.774
NZ_CP053659_2	2.4\|1500030\|31\|NZ_CP053659\|CRISPRCasFinder	1500030-1500060	31	MT774379	CrAssphage cr118_1, complete genome	84169-84199	7	0.774
NZ_CP053659_2	2.4\|1500030\|31\|NZ_CP053659\|CRISPRCasFinder	1500030-1500060	31	JF974298	Methylophilales phage HIM624-A, * SEQUENCING IN PROGRESS *, 5 unordered pieces	13735-13765	7	0.774
NZ_CP053659_2	2.1\|1499966\|29\|NZ_CP053659\|PILER-CR	1499966-1499994	29	NZ_CP016630	Lactobacillus johnsonii strain BS15 plasmid LJBSp1, complete sequence	11765-11793	8	0.724
NZ_CP053659_2	2.1\|1499966\|29\|NZ_CP053659\|PILER-CR	1499966-1499994	29	NZ_CP016630	Lactobacillus johnsonii strain BS15 plasmid LJBSp1, complete sequence	37697-37725	8	0.724
NZ_CP053659_2	2.1\|1499966\|29\|NZ_CP053659\|PILER-CR	1499966-1499994	29	CP024782	Lactobacillus johnsonii pf01 plasmid pLJPF01L, complete sequence	4382-4410	8	0.724
NZ_CP053659_2	2.1\|1499966\|29\|NZ_CP053659\|PILER-CR	1499966-1499994	29	MH884508	Bacillus phage vB_BcoS-136, complete genome	85145-85173	8	0.724
NZ_CP053659_2	2.3\|1499964\|31\|NZ_CP053659\|CRISPRCasFinder	1499964-1499994	31	MT741943	Acinetobacter phage Meroveus, complete genome	17160-17190	8	0.742
NZ_CP053659_2	2.3\|1499964\|31\|NZ_CP053659\|CRISPRCasFinder	1499964-1499994	31	MT409116	Acinetobacter phage Octan, complete genome	17033-17063	8	0.742
NZ_CP053659_2	2.3\|1499964\|31\|NZ_CP053659\|CRISPRCasFinder	1499964-1499994	31	NZ_CP014569	Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp1, complete sequence	3320-3350	8	0.742
NZ_CP053659_2	2.3\|1499964\|31\|NZ_CP053659\|CRISPRCasFinder	1499964-1499994	31	NZ_CP027787	Tetragenococcus koreensis strain KCTC 3924 plasmid pTK, complete sequence	10566-10596	8	0.742
NZ_CP053659_2	2.3\|1499964\|31\|NZ_CP053659\|CRISPRCasFinder	1499964-1499994	31	MH884508	Bacillus phage vB_BcoS-136, complete genome	85144-85174	9	0.71
NZ_CP053659_1	1.1\|1337662\|34\|NZ_CP053659\|CRISPRCasFinder	1337662-1337695	34	MH752385	Bacillus phage Ray17, complete genome	8509-8542	10	0.706

1. spacer 2.1|1499966|29|NZ_CP053659|PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 0, identity: 1.0

taatttctaatttcatttataacctttca	CRISPR spacer
taatttctaatttcatttataacctttca	Protospacer
*****************************

2. spacer 2.2|1500032|29|NZ_CP053659|PILER-CR matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.966

agtagctaagaataaaataagaaacactg	CRISPR spacer
agtggctaagaataaaataagaaacactg	Protospacer
***.*************************

3. spacer 2.3|1499964|31|NZ_CP053659|CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.968

ataatttctaatttcatttataacctttcag	CRISPR spacer
ataatttctaatttcatttataacctttcaa	Protospacer
******************************.

4. spacer 2.4|1500030|31|NZ_CP053659|CRISPRCasFinder matches to MN530981 (Campylobacter phage DA10, complete genome) position: , mismatch: 1, identity: 0.968

tagtagctaagaataaaataagaaacactgg	CRISPR spacer
tagtggctaagaataaaataagaaacactgg	Protospacer
****.**************************

5. spacer 2.1|1499966|29|NZ_CP053659|PILER-CR matches to NZ_CP017864 (Campylobacter jejuni strain IF1100 plasmid pCJDM100, complete sequence) position: , mismatch: 5, identity: 0.828

taatttctaatttcatttataacctttca	CRISPR spacer
aaatttctaacttcatttataacttttgc	Protospacer
 *********.************.***

6. spacer 2.3|1499964|31|NZ_CP053659|CRISPRCasFinder matches to MN855683 (Siphoviridae sp. isolate 326, complete genome) position: , mismatch: 5, identity: 0.839

ataattt-ctaatttcatttataacctttcag	CRISPR spacer
-taatctgctaatttcatttttaacctctcaa	Protospacer
 ****.* ************ ******.***.

7. spacer 2.1|1499966|29|NZ_CP053659|PILER-CR matches to MT741943 (Acinetobacter phage Meroveus, complete genome) position: , mismatch: 6, identity: 0.793

taatttctaatttcatttataacctttca	CRISPR spacer
gcttttttaattttatttataacctttga	Protospacer
   ***.******.************* *

8. spacer 2.1|1499966|29|NZ_CP053659|PILER-CR matches to MT409116 (Acinetobacter phage Octan, complete genome) position: , mismatch: 6, identity: 0.793

taatttctaatttcatttataacctttca	CRISPR spacer
gcttttttaattttatttataacctttga	Protospacer
   ***.******.************* *

9. spacer 2.1|1499966|29|NZ_CP053659|PILER-CR matches to NZ_CP027787 (Tetragenococcus koreensis strain KCTC 3924 plasmid pTK, complete sequence) position: , mismatch: 6, identity: 0.793

taatttctaatttcatttataacctttca	CRISPR spacer
tgatttctaatttcattttaaacctccta	Protospacer
*.****************  *****...*

10. spacer 2.1|1499966|29|NZ_CP053659|PILER-CR matches to MN855683 (Siphoviridae sp. isolate 326, complete genome) position: , mismatch: 6, identity: 0.793

taatttctaatttcatttataacctttca	CRISPR spacer
aatctgctaatttcatttttaacctctca	Protospacer
 * .* ************ ******.***

11. spacer 2.2|1500032|29|NZ_CP053659|PILER-CR matches to MT774379 (CrAssphage cr118_1, complete genome) position: , mismatch: 6, identity: 0.793

agtagctaagaataaaataagaaacactg	CRISPR spacer
catagctaagaatataataagaaaatcta	Protospacer
 .************ *********  **.

12. spacer 2.1|1499966|29|NZ_CP053659|PILER-CR matches to NZ_CP014569 (Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp1, complete sequence) position: , mismatch: 7, identity: 0.759

taatttctaatttcatttataacctttca	CRISPR spacer
gcctttttaatatcatttataaccttact	Protospacer
   ***.**** ************** *

13. spacer 2.2|1500032|29|NZ_CP053659|PILER-CR matches to MT074146 (Bacteroides phage SJC03, complete genome) position: , mismatch: 7, identity: 0.759

agtagctaagaataaaataagaaacactg	CRISPR spacer
attttaaaagaataaaataaaaaacactc	Protospacer
* *    *************.*******

14. spacer 2.3|1499964|31|NZ_CP053659|CRISPRCasFinder matches to NZ_CP017864 (Campylobacter jejuni strain IF1100 plasmid pCJDM100, complete sequence) position: , mismatch: 7, identity: 0.774

ataatttctaatttcatttataacctttcag	CRISPR spacer
taaatttctaacttcatttataacttttgca	Protospacer
  *********.************.***  .

15. spacer 2.3|1499964|31|NZ_CP053659|CRISPRCasFinder matches to MH707430 (Bacillus phage BSP7, complete genome) position: , mismatch: 7, identity: 0.774

ataatttctaatttcatttataac--ctttcag	CRISPR spacer
ataactgctaatttcatttataatgacctcc--	Protospacer
****.* ****************.  *.*.*

16. spacer 2.4|1500030|31|NZ_CP053659|CRISPRCasFinder matches to MT774379 (CrAssphage cr118_1, complete genome) position: , mismatch: 7, identity: 0.774

tagtagctaagaataaaataagaaacactgg	CRISPR spacer
gcatagctaagaatataataagaaaatctag	Protospacer
  .************ *********  **.*

17. spacer 2.4|1500030|31|NZ_CP053659|CRISPRCasFinder matches to JF974298 (Methylophilales phage HIM624-A, *** SEQUENCING IN PROGRESS ***, 5 unordered pieces) position: , mismatch: 7, identity: 0.774

tagtagctaagaataaaataagaaacactgg	CRISPR spacer
tagtaactaagaataaattaagaggttcagg	Protospacer
*****.*********** *****... * **

18. spacer 2.1|1499966|29|NZ_CP053659|PILER-CR matches to NZ_CP016630 (Lactobacillus johnsonii strain BS15 plasmid LJBSp1, complete sequence) position: , mismatch: 8, identity: 0.724

taatttctaatttcatttataacctttca	CRISPR spacer
ggatttctattttcatttataactcctgt	Protospacer
 .******* *************...*

19. spacer 2.1|1499966|29|NZ_CP053659|PILER-CR matches to NZ_CP016630 (Lactobacillus johnsonii strain BS15 plasmid LJBSp1, complete sequence) position: , mismatch: 8, identity: 0.724

taatttctaatttcatttataacctttca	CRISPR spacer
ggatttctattttcatttataactcctgt	Protospacer
 .******* *************...*

20. spacer 2.1|1499966|29|NZ_CP053659|PILER-CR matches to CP024782 (Lactobacillus johnsonii pf01 plasmid pLJPF01L, complete sequence) position: , mismatch: 8, identity: 0.724

taatttctaatttcatttataacctttca	CRISPR spacer
ggatttctattttcatttataactcctgt	Protospacer
 .******* *************...*

21. spacer 2.1|1499966|29|NZ_CP053659|PILER-CR matches to MH884508 (Bacillus phage vB_BcoS-136, complete genome) position: , mismatch: 8, identity: 0.724

taatttctaatttcatttataacctttca	CRISPR spacer
taatttctaattccatttctaactgcatc	Protospacer
************.***** ****. . .

22. spacer 2.3|1499964|31|NZ_CP053659|CRISPRCasFinder matches to MT741943 (Acinetobacter phage Meroveus, complete genome) position: , mismatch: 8, identity: 0.742

ataatttctaatttcatttataacctttcag	CRISPR spacer
ggcttttttaattttatttataacctttgat	Protospacer
.   ***.******.************* *

23. spacer 2.3|1499964|31|NZ_CP053659|CRISPRCasFinder matches to MT409116 (Acinetobacter phage Octan, complete genome) position: , mismatch: 8, identity: 0.742

ataatttctaatttcatttataacctttcag	CRISPR spacer
ggcttttttaattttatttataacctttgat	Protospacer
.   ***.******.************* *

24. spacer 2.3|1499964|31|NZ_CP053659|CRISPRCasFinder matches to NZ_CP014569 (Campylobacter fetus subsp. venerealis strain 01/165 plasmid mp1, complete sequence) position: , mismatch: 8, identity: 0.742

ataatttctaatttcatttataacctttcag	CRISPR spacer
agcctttttaatatcatttataaccttactt	Protospacer
*   ***.**** ************** *

25. spacer 2.3|1499964|31|NZ_CP053659|CRISPRCasFinder matches to NZ_CP027787 (Tetragenococcus koreensis strain KCTC 3924 plasmid pTK, complete sequence) position: , mismatch: 8, identity: 0.742

ataatttctaatttcatttataacctttcag	CRISPR spacer
ttgatttctaatttcattttaaacctcctac	Protospacer
 *.****************  *****...*

26. spacer 2.3|1499964|31|NZ_CP053659|CRISPRCasFinder matches to MH884508 (Bacillus phage vB_BcoS-136, complete genome) position: , mismatch: 9, identity: 0.71

ataatttctaatttcatttataacctttcag	CRISPR spacer
ataatttctaattccatttctaactgcatca	Protospacer
*************.***** ****. . . .

27. spacer 1.1|1337662|34|NZ_CP053659|CRISPRCasFinder matches to MH752385 (Bacillus phage Ray17, complete genome) position: , mismatch: 10, identity: 0.706

ttttttagctttatactcagccttactcatataa	CRISPR spacer
cttacaagctttatactcagccttattgatcgtt	Protospacer
.** . *******************.* **

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1385657 : 1392663

Synechococcus_phage(28.57%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002889981.1\|1385657_1386203_+	dTDP-4-dehydrorhamnose 3,5-epimerase family protein	A0A1D7XFA9	Escherichia_phage	1.1e-14	30.2
WP_002889995.1\|1386205_1387135_+	FkbM family methyltransferase	NA	NA	NA	NA
WP_052794648.1\|1387138_1388233_+	GDP-L-fucose synthase	D1LW79	Prochlorococcus_phage	9.5e-79	42.9
WP_002890912.1\|1388320_1389361_+	NAD-dependent epimerase/dehydratase family protein	M1HKX0	Paramecium_bursaria_Chlorella_virus	4.8e-64	40.8
WP_002917288.1\|1389369_1390401_+	GDP-mannose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	2.1e-144	72.1
WP_002917287.1\|1390397_1391417_+	D-glycero-D-manno-heptose 7-phosphate kinase	A0A222YW25	Synechococcus_phage	1.2e-59	41.3
WP_002890914.1\|1391404_1392010_+	D-sedoheptulose 7-phosphate isomerase	A0A067XQR2	Caulobacter_phage	1.8e-15	34.4
WP_002890917.1\|1391997_1392663_+	NTP transferase domain-containing protein	A0A2K9L821	Tupanvirus	2.4e-08	27.2

DBSCAN-SWA_2

1400584 : 1447230

Campylobacter_phage(61.29%)

integrase,tail,capsid,transposase,tRNA,plate,terminase

attL 1405954:1405971|attR 1456085:1456102

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002890496.1\|1400584_1401703_-\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_002867254.1\|1401671_1402493_-	thiamine-phosphate kinase	NA	NA	NA	NA
WP_002904232.1\|1402579_1403653_+	DUF5644 domain-containing protein	NA	NA	NA	NA
WP_002899071.1\|1403649_1404033_+	hypothetical protein	NA	NA	NA	NA
WP_002899073.1\|1404025_1404709_+	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA
WP_002826014.1\|1404767_1405814_+	flagellar basal body P-ring protein FlgI	NA	NA	NA	NA
WP_002851191.1\|1405813_1406155_+	hypothetical protein	NA	NA	NA	NA
1405954:1405971	attL	NA	NA	NA	NA
WP_002779262.1\|1406217_1406415_+	flagellar biosynthesis anti-sigma factor FlgM	NA	NA	NA	NA
WP_002779263.1\|1406457_1406892_+	flagellar protein FlgN	NA	NA	NA	NA
WP_002851396.1\|1406901_1408728_+	flagellar hook-associated protein FlgK	NA	NA	NA	NA
WP_052778344.1\|1409269_1409971_-	hypothetical protein	NA	NA	NA	NA
WP_002791430.1\|1409970_1410645_-	LexA family transcriptional regulator	X2KRC9	Campylobacter_phage	1.4e-24	32.3
WP_002826948.1\|1410794_1410995_+	hypothetical protein	NA	NA	NA	NA
WP_032593272.1\|1410991_1413067_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_052778345.1\|1413137_1414061_+	AAA family ATPase	A0A2H4JAW1	uncultured_Caudovirales_phage	6.7e-09	25.0
WP_171849138.1\|1414063_1414255_+	RNA polymerase subunit sigma-70	NA	NA	NA	NA
WP_002824157.1\|1414251_1414437_+	hypothetical protein	NA	NA	NA	NA
WP_002791419.1\|1414493_1414835_+	hypothetical protein	NA	NA	NA	NA
WP_052782897.1\|1414941_1415427_+	host-nuclease inhibitor Gam family protein	A0A2K9VGT9	Faecalibacterium_phage	1.1e-18	33.3
WP_002824160.1\|1415423_1415609_+	hypothetical protein	NA	NA	NA	NA
WP_002791414.1\|1415672_1415945_+	hypothetical protein	NA	NA	NA	NA
WP_052774289.1\|1415941_1416367_+	hypothetical protein	A0A2R3ZY25	Campylobacter_phage	4.8e-18	40.1
WP_041160246.1\|1416475_1417438_+	hypothetical protein	NA	NA	NA	NA
WP_002784531.1\|1417434_1417704_+	hypothetical protein	NA	NA	NA	NA
WP_041160245.1\|1417703_1418396_+	hypothetical protein	NA	NA	NA	NA
WP_002876315.1\|1418392_1418842_+	DUF1018 domain-containing protein	NA	NA	NA	NA
WP_002873721.1\|1418888_1419164_+	hypothetical protein	NA	NA	NA	NA
WP_100620450.1\|1419155_1419827_-	endonuclease	NA	NA	NA	NA
WP_052778348.1\|1419920_1420205_+	DNA-binding protein	NA	NA	NA	NA
WP_002852060.1\|1420201_1421179_-\|tail	tail protein	A0A219Y9Y2	Aeromonas_phage	6.2e-13	25.7
WP_002784520.1\|1421172_1421364_-\|tail	tail protein X	NA	NA	NA	NA
WP_002876309.1\|1421356_1421731_-\|tail	phage tail protein	NA	NA	NA	NA
WP_171849139.1\|1421856_1423095_-	hypothetical protein	M4M9M5	Vibrio_phage	7.4e-19	29.3
WP_002872709.1\|1423096_1424467_-	DUF935 family protein	A0A2H4JHL1	uncultured_Caudovirales_phage	4.5e-17	26.6
WP_038401728.1\|1424476_1426147_-\|terminase	phage terminase large subunit	H1ZZE1	Pseudomonas_virus	1.5e-91	41.2
WP_002803360.1\|1426146_1426746_-	DUF1804 family protein	NA	NA	NA	NA
WP_002855185.1\|1426738_1427197_-	DUF1320 family protein	NA	NA	NA	NA
WP_002865469.1\|1427311_1428289_-\|capsid	major capsid protein	R9TRN2	Rhizobium_phage	3.3e-06	23.4
WP_002784505.1\|1428291_1428819_-	hypothetical protein	NA	NA	NA	NA
WP_052798387.1\|1428821_1429637_-	hypothetical protein	A0A2H4JAW3	uncultured_Caudovirales_phage	2.9e-24	48.4
WP_002784501.1\|1429638_1430073_-	hypothetical protein	NA	NA	NA	NA
WP_052798388.1\|1430220_1430610_+	DUF882 domain-containing protein	A0A2I7R2R3	Vibrio_phage	1.7e-22	44.1
WP_002876558.1\|1430620_1430962_+	hypothetical protein	NA	NA	NA	NA
WP_052798389.1\|1430958_1431207_+	hypothetical protein	NA	NA	NA	NA
WP_052778349.1\|1431318_1431633_+	hypothetical protein	NA	NA	NA	NA
WP_052777356.1\|1431632_1432265_+\|plate	phage baseplate assembly protein V	V5YUM9	Pseudomonas_phage	7.8e-09	35.6
WP_002795238.1\|1432273_1432465_+	hypothetical protein	NA	NA	NA	NA
WP_052784877.1\|1432461_1432752_+	GPW/gp25 family protein	Q8H9N4	Vibrio_phage	2.7e-09	40.8
WP_052798390.1\|1432748_1433915_+\|plate	baseplate J/gp47 family protein	Q8H9N3	Vibrio_phage	3.9e-14	24.6
WP_002855112.1\|1433911_1434532_+\|tail	phage tail protein I	A7YH02	Campylobacter_phage	8.7e-61	100.0
WP_171849140.1\|1434531_1435563_+\|tail	phage tail protein	A7YGH9	Campylobacter_phage	5.3e-188	99.1
WP_002855083.1\|1435587_1436094_+	DUF4376 domain-containing protein	A7YGH8	Campylobacter_phage	3.4e-87	100.0
WP_002938257.1\|1436090_1436462_+	DUF1353 domain-containing protein	A7YGH7	Campylobacter_phage	1.5e-68	100.0
WP_171849141.1\|1436560_1437568_+	hypothetical protein	A7YG78	Campylobacter_phage	2.3e-188	97.6
WP_052778352.1\|1437586_1438780_+\|tail	phage tail sheath family protein	A7YGF4	Campylobacter_phage	3.6e-196	99.0
WP_002865376.1\|1438806_1439316_+\|tail	phage major tail tube protein	A7YG76	Campylobacter_phage	3.3e-90	100.0
WP_002843342.1\|1439468_1439708_+\|tail	phage tail assembly protein	A7YGZ3	Campylobacter_phage	3.2e-11	62.5
WP_002791365.1\|1439819_1440125_-	hypothetical protein	A7YG88	Campylobacter_phage	1.9e-32	90.1
WP_041160232.1\|1440166_1442389_+\|tail	phage tail tape measure protein	A7YG97	Campylobacter_phage	0.0e+00	99.9
WP_052778353.1\|1442392_1442881_+	phage virion morphogenesis protein	A7YG96	Campylobacter_phage	3.8e-88	98.8
WP_002870153.1\|1442985_1443801_+	DNA adenine methylase	A7YGG5	Campylobacter_phage	1.4e-151	100.0
WP_002865289.1\|1443828_1444116_-	hypothetical protein	A7YGG4	Campylobacter_phage	1.9e-47	100.0
WP_002843339.1\|1444195_1444390_-	hypothetical protein	A7YG72	Campylobacter_phage	1.8e-28	100.0
WP_038400980.1\|1444399_1444720_-	hypothetical protein	A7YGI4	Campylobacter_phage	1.7e-52	99.1
WP_052778354.1\|1444800_1445430_-	S24 family peptidase	A7YG70	Campylobacter_phage	8.5e-56	92.0
WP_052778355.1\|1445514_1447230_-	AAA family ATPase	X2KLG0	Campylobacter_phage	3.2e-81	36.8
1456085:1456102	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP053659

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection