CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP035946	Campylobacter canadensis strain LMG 24001 chromosome, complete genome	7 crisprs	cas1,cas2,cas4,DEDDh,csx20,csm3gr7,csx19,cas10,cas6,csa3	2	9	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP035946_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP035946_1

139926-141486

TypeII

Consensus_repeat	Method
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	PILER-CR
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	CRISPRCasFinder
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	CRT

21 spacers

cas9,cas1,cas2,cas4

The CRISPR arrays of NZ_CP035946_1

>merge|NZ_CP035946|1|139926-141486|PILER-CR,CRISPRCasFinder,CRT
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAGATTGGCATCGTTGGCACCGATTCAGCACTCGAAACGTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAGTCTTCTAAAATTGAAGTTTCAAGTAGCTTCATCTCGTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAGCAAAATTTGCGATATAATGACGATAATGAACTGAAGTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAGCGATAAACCGAATTGTCTGCATCTTTAAATGCTAGGTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAGTATGAAGTTGGAAAAAGATGTTTAATTCGTACTACGTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAGATCAACGTTAATTAAATATTCGTTATTAACATATGAGTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAGCATCCTTTCTTCAAGTGGTTTATCTATTACCACAACGTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAGAATTCTTCATTAGAGAAATCAGCATTTAAAGTATTGTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAGCGAGCATTCTGACTGTCTTCAAAACCCCAATCTTTGTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAGCAGCAAATCGTGGCTGGTGGTGTGCTAGAGCTTGAGTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAGGTTTTCTTTTAAAAATTTTGGTAAGCTTTTTTTGTAGTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAGTAAGTGCTTACATAACTTTTTGGAAAAATATTTTTAAGTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAGCATCCTTTCTTCAAGTGGTTTATCTATTACCACAACGTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAGCAAGATTTAATCTTGTTAATTTTTGCAGCGACTTTAGTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAGAACAAGGAACATAAGTCTCTTGTAGTTAGCAAATCGTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAGAAAGCTATTGGTGGTGGCATTCCTAATCCTATAAAGTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAGAGCTATTAATAAACAAATTAATATTAAAAAAGATATGTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAGTTCTTTACTTCTAGTTTCGCCAACAATAATTCTGTCGTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAGCAATATCAAAGAAGACAAGGCAATGTTTGTTTGTGTGTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAGTAGCCAATTATAGAGACTACTTCTTTAGCTGTTTGGTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAGATTAAAACTCCGCATTCAAGACCAGCGTGAATGCTTGGTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG

>NZ_CP035946|1|1|139926-141486|PILER-CR
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	ATTGGCATCGTTGGCACCGATTCAGCACTCGAAAC
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	TCTTCTAAAATTGAAGTTTCAAGTAGCTTCATCTC
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	CAAAATTTGCGATATAATGACGATAATGAACTGAA
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	CGATAAACCGAATTGTCTGCATCTTTAAATGCTAG
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	TATGAAGTTGGAAAAAGATGTTTAATTCGTACTAC
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	ATCAACGTTAATTAAATATTCGTTATTAACATATGA
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	CATCCTTTCTTCAAGTGGTTTATCTATTACCACAAC
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	AATTCTTCATTAGAGAAATCAGCATTTAAAGTATT
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	CGAGCATTCTGACTGTCTTCAAAACCCCAATCTTT
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	CAGCAAATCGTGGCTGGTGGTGTGCTAGAGCTTGA
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	GTTTTCTTTTAAAAATTTTGGTAAGCTTTTTTTGTA
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	TAAGTGCTTACATAACTTTTTGGAAAAATATTTTTAA
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	CATCCTTTCTTCAAGTGGTTTATCTATTACCACAAC
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	CAAGATTTAATCTTGTTAATTTTTGCAGCGACTTTA
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	AACAAGGAACATAAGTCTCTTGTAGTTAGCAAATC
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	AAAGCTATTGGTGGTGGCATTCCTAATCCTATAAA
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	AGCTATTAATAAACAAATTAATATTAAAAAAGATAT
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	TTCTTTACTTCTAGTTTCGCCAACAATAATTCTGTC
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	CAATATCAAAGAAGACAAGGCAATGTTTGTTTGTGT
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	TAGCCAATTATAGAGACTACTTCTTTAGCTGTTTG
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	ATTAAAACTCCGCATTCAAGACCAGCGTGAATGCTTG
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG

>NZ_CP035946|1|1|139926-141486|CRISPRCasFinder
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	ATTGGCATCGTTGGCACCGATTCAGCACTCGAAAC
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	TCTTCTAAAATTGAAGTTTCAAGTAGCTTCATCTC
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	CAAAATTTGCGATATAATGACGATAATGAACTGAA
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	CGATAAACCGAATTGTCTGCATCTTTAAATGCTAG
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	TATGAAGTTGGAAAAAGATGTTTAATTCGTACTAC
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	ATCAACGTTAATTAAATATTCGTTATTAACATATGA
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	CATCCTTTCTTCAAGTGGTTTATCTATTACCACAAC
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	AATTCTTCATTAGAGAAATCAGCATTTAAAGTATT
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	CGAGCATTCTGACTGTCTTCAAAACCCCAATCTTT
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	CAGCAAATCGTGGCTGGTGGTGTGCTAGAGCTTGA
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	GTTTTCTTTTAAAAATTTTGGTAAGCTTTTTTTGTA
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	TAAGTGCTTACATAACTTTTTGGAAAAATATTTTTAA
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	CATCCTTTCTTCAAGTGGTTTATCTATTACCACAAC
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	CAAGATTTAATCTTGTTAATTTTTGCAGCGACTTTA
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	AACAAGGAACATAAGTCTCTTGTAGTTAGCAAATC
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	AAAGCTATTGGTGGTGGCATTCCTAATCCTATAAA
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	AGCTATTAATAAACAAATTAATATTAAAAAAGATAT
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	TTCTTTACTTCTAGTTTCGCCAACAATAATTCTGTC
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	CAATATCAAAGAAGACAAGGCAATGTTTGTTTGTGT
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	TAGCCAATTATAGAGACTACTTCTTTAGCTGTTTG
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	ATTAAAACTCCGCATTCAAGACCAGCGTGAATGCTTG
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG

>NZ_CP035946|1|1|139926-141486|CRT
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	ATTGGCATCGTTGGCACCGATTCAGCACTCGAAAC
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	TCTTCTAAAATTGAAGTTTCAAGTAGCTTCATCTC
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	CAAAATTTGCGATATAATGACGATAATGAACTGAA
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	CGATAAACCGAATTGTCTGCATCTTTAAATGCTAG
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	TATGAAGTTGGAAAAAGATGTTTAATTCGTACTAC
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	ATCAACGTTAATTAAATATTCGTTATTAACATATGA
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	CATCCTTTCTTCAAGTGGTTTATCTATTACCACAAC
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	AATTCTTCATTAGAGAAATCAGCATTTAAAGTATT
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	CGAGCATTCTGACTGTCTTCAAAACCCCAATCTTT
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	CAGCAAATCGTGGCTGGTGGTGTGCTAGAGCTTGA
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	GTTTTCTTTTAAAAATTTTGGTAAGCTTTTTTTGTA
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	TAAGTGCTTACATAACTTTTTGGAAAAATATTTTTAA
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	CATCCTTTCTTCAAGTGGTTTATCTATTACCACAAC
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	CAAGATTTAATCTTGTTAATTTTTGCAGCGACTTTA
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	AACAAGGAACATAAGTCTCTTGTAGTTAGCAAATC
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	AAAGCTATTGGTGGTGGCATTCCTAATCCTATAAA
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	AGCTATTAATAAACAAATTAATATTAAAAAAGATAT
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	TTCTTTACTTCTAGTTTCGCCAACAATAATTCTGTC
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	CAATATCAAAGAAGACAAGGCAATGTTTGTTTGTGT
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	TAGCCAATTATAGAGACTACTTCTTTAGCTGTTTG
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG	ATTAAAACTCCGCATTCAAGACCAGCGTGAATGCTTG
GTTTCAAACCATGTTTTGCTAGAATTAGGTTTGAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP035946.1\|WP_172229940.1\|135833_136460_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP035946.1\|WP_172229928.1\|127413_129108_+\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|181195
NZ_CP035946.1\|WP_172229946.1\|138045_138627_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP035946.1\|WP_172229934.1\|133155_134175_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226868
NZ_CP035946.1\|WP_172229958.1\|146509_146776_+\|CRISPR-associated-endonuclease-Cas2	cas2	pfam09827_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|378256
NZ_CP035946.1\|WP_172229955.1\|145555_146509_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187766
NZ_CP035946.1\|WP_172229943.1\|136786_137845_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP035946.1\|WP_172229973.1\|148791_151245_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238657
NZ_CP035946.1\|WP_172229925.1\|126208_127411_+\|L-carnitine-CoA-transferase	unknown	unknown	gnl\|CDD\|179589
NZ_CP035946.1\|WP_172229931.1\|129094_130423_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182194
NZ_CP035946.1\|WP_172229937.1\|134402_135434_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP035946.1\|WP_172229967.1\|147999_148362_-\|biopolymer-transporter-ExbD	unknown	unknown	gnl\|CDD\|376792
NZ_CP035946.1\|WP_172229952.1\|141788_145562_+\|hypothetical-protein	cas9	cd09704_cas9_CAS-II-B	gnl\|CDD\|274401
NZ_CP035946.1\|WP_070314832.1\|130419_130749_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|185346
NZ_CP035946.1\|WP_172229964.1\|147382_148003_-\|energy-transducer-TonB	unknown	unknown	gnl\|CDD\|223880
NZ_CP035946.1\|WP_172229976.1\|151317_151917_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP035946.1\|WP_172229979.1\|151913_152672_-\|sel1-repeat-family-protein	unknown	unknown	gnl\|CDD\|276807
NZ_CP035946.1\|WP_172229949.1\|138767_139727_+\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|227305
NZ_CP035946.1\|WP_172229961.1\|146806_147379_+\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|187768
NZ_CP035946.1\|WP_172229970.1\|148354_148792_-\|MotA/TolQ/ExbB-proton-channel-family-protein	unknown	unknown	gnl\|CDD\|131852

Protein	Function_ID	Function_description	E-value
NZ_CP035946.1\|WP_172229928.1\|127413_129108_+\|AMP-binding-protein	gnl\|CDD\|181195	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated.	8.25888e-129
NZ_CP035946.1\|WP_070314832.1\|130419_130749_+\|hypothetical-protein	gnl\|CDD\|185346	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional.	7.85276e-28
NZ_CP035946.1\|WP_172229934.1\|133155_134175_+\|hypothetical-protein	gnl\|CDD\|226868	COG4461, LprI, Uncharacterized protein conserved in bacteria, putative lipoprotein [Function unknown].	3.57285e-06
NZ_CP035946.1\|WP_172229967.1\|147999_148362_-\|biopolymer-transporter-ExbD	gnl\|CDD\|376792	pfam02472, ExbD, Biopolymer transport protein ExbD/TolR. This group of proteins are membrane bound transport proteins essential for ferric ion uptake in bacteria. The Pfam family consists of ExbD, and TolR which are involved in TonB-dependent transport of various receptor bound substrates including colicins.	1.5067e-12
NZ_CP035946.1\|WP_172229964.1\|147382_148003_-\|energy-transducer-TonB	gnl\|CDD\|223880	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane].	9.55671e-07
NZ_CP035946.1\|WP_172229958.1\|146509_146776_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|378256	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages.	6.09602e-09
NZ_CP035946.1\|WP_172229925.1\|126208_127411_+\|L-carnitine-CoA-transferase	gnl\|CDD\|179589	PRK03525, PRK03525, L-carnitine CoA-transferase.	0
NZ_CP035946.1\|WP_172229931.1\|129094_130423_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	7.34511e-113
NZ_CP035946.1\|WP_172229973.1\|148791_151245_-\|hypothetical-protein	gnl\|CDD\|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	3.89982e-05
NZ_CP035946.1\|WP_172229952.1\|141788_145562_+\|hypothetical-protein	gnl\|CDD\|274401	TIGR03031, cas_csx12, CRISPR system subtype II-B RNA-guided endonuclease Cas9/Csx12. Members of this family of CRISPR-associated (cas) protein are found, so far, in CRISPR/cas loci in Wolinella succinogenes DSM 1740, Legionella pneumophila str. Paris, and Francisella tularensis, where the last probably is an example of a degenerate CRISPR locus, having neither repeats nor a functional Cas1. The characteristic repeat length is 37 base pairs and period is about 72. One region of this large protein shows sequence similarity to pfam01844, HNH endonuclease.	6.32889e-47
NZ_CP035946.1\|WP_172229979.1\|151913_152672_-\|sel1-repeat-family-protein	gnl\|CDD\|276807	sd00010, SLR, Sel1-like repeat. Sel1-like repeats (SLRs) share similar alpha-helical conformations with Tetratricopeptide repeats (TPRs), but with different consensus sequence lengths and superhelical topologies. SLRs contain 36 to 44 amino acids and are present in bacteria and eukaryotes but not in archaea. SLR proteins are involved in a variety of functions, and many serve as adaptor proteins for the assembly of macromolecular complexes. The SLR family was named after the Caenorhabditis elegans Sel1 protein which is predicted to fold into 11 SLRs, a transmembrane domain, and an N-terminal signal sequence. The human Sel1L protein contains an additional fibronectin type-II domain and an N-terminal PEST sequence. Its downregulation is associated with the development of breast and pancreatic carcinomas.	1.81115e-18
NZ_CP035946.1\|WP_172229970.1\|148354_148792_-\|MotA/TolQ/ExbB-proton-channel-family-protein	gnl\|CDD\|131852	TIGR02805, Biopolymer_transport_protein_ExbB, tonB-system energizer ExbB, group 2. Members of this protein family appear to be the ExbB protein of an ExbBD proton-transporting membrane complex that, by means of TonB, energizes transport by TonB-dependent receptors. Note that this family represents one of at least two distinct groups TolQ homologs designated ExbB - see also TIGR02797. Each group associates with a distinct group of ExbD proteins, and a single species may have two ExbB/ExbD/TonB systems. [Transport and binding proteins, Cations and iron carrying compounds].	3.23558e-25
NZ_CP035946.1\|WP_172229949.1\|138767_139727_+\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	gnl\|CDD\|227305	COG4970, FimT, Tfp pilus assembly protein FimT [Cell motility and secretion / Intracellular trafficking and secretion].	2.33039e-06
NZ_CP035946.1\|WP_172229961.1\|146806_147379_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|187768	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas4 is RecB-like nuclease with three-cysteine C-terminal cluster.	1.38906e-17
NZ_CP035946.1\|WP_172229955.1\|145555_146509_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187766	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.39302e-66

>NZ_CP035946.1|WP_172229949.1|138767_139727_+|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein
MLSIKKYNNNFINSFLIYSFYTKDINKQDINKQDINKQDINTKSIKKLTINTTSINKIKNTNISKVLNTNKGKYKDLNKVLNNKANNFTHNKQAYTLLELVIVIVIIAILSSVALSKIHSINSLEESARALMNDIKYAQINALSYDFYDGANNDDYKKKYFRLRFHCIANTYNAKYKKYICSKNKEIGYTIFADKAGKSSSNPDKNEIVKDYINKSLLIAAPFSGVSIDKSLFTPRANLSKSANIIKAAFYYYDNKAKIKKTSTIYFNEFGNLSSNIYDFNSIQHYYIKLSSKDDYICIKLNYIGFSKIVDKSECINFN
>NZ_CP035946.1|WP_172229946.1|138045_138627_+|hypothetical-protein
MFKKLGLSLMLVSLLSAGLFDIFHKDKIPKTPIYTLFDLSKKGSKIEILFKPQRKDIGEHVGFYAFYPLRFKYGEVGKDFYSVDLYDKKTESNIRDNPYYPLALDIKIYELTKDGDEILVFDKIATPNANTNVDSLRTMSIKNEKVFMAVRYLGFYFIPENKTYKAVITNLIDDDNIKGDFTKIAITVYRRKV
>NZ_CP035946.1|WP_172229943.1|136786_137845_+|hypothetical-protein
MWFIIWFFVCFGDIFIGYVAFYYNAYKYARNTYFEPFKGDSLYLGEHKVWLSGEKVSKISEYYIGGWPNSILPDFYTRLLLDNKIKYIEYKEVSEHPINNGKYFRLYSSNEDDKNCVASKELKTRLFFSISYVKNDGTKGFIEYDEFLELYNKYYKKYLENYNKYYAYWDYFLDKNIFHEKIPTEIKELITYLIKIYNMKNSNIIAFIDYLPKYKSIIAELEEFYKNKCIARVQIDKNEVSRYEYVECTNSDYEYICDYPDIKDKAWAKFKYFAYIKDRNNNKKIAQSIFTYKTGKPFLLYSTIAEVTAPPEVLYGSTKLCNKNINVGVYSDSECRNIFIENFINDKELRNE
>NZ_CP035946.1|WP_172229940.1|135833_136460_+|hypothetical-protein
MQRDYDKEPLIIKDINTFFDFLPAFVCIIICYIAYLLTDNPSSSFYRNAFIIMPFLTLPYIRPFIKCKREIIITKNTISYLNNGEVLESIDLNSPFKIYKSFSVAHHKSQKPHEVIQILWLFLLPGTIFQYFMNFILKLFYYIFAFKLKHYKVMDSVILLQDEKIINILSIEKYYELEKYFKDSHNINIKELKIYFDKYGYVYEKIDN
>NZ_CP035946.1|WP_172229937.1|134402_135434_+|hypothetical-protein
MKKVLKILKILFIIFIIIEIMIAIGSVVVGPTIGRGKPEKDIFWMLVCFFVANVCIYEYLIKIIVLFYKGLILYPLTYFKVFIIIFFTILFFKLRKKFNNKIAFKYSIIPMIIMFILDISFLRVVPDYSSKTHEKTVTLIGYKKYQQGYCLEEDRILPKDELYKRVVIDDFTKQLIFKDIVYKNKYNSIEKHEYMIHKDINLDNYKDYLRKNAYSKEYVNYDELESVDYTKYLVVKNNTAGFTKPIILPVGGVRVSITFYLDLAFEFKDNTYGTYRFYLFDEFDERKDKEKEYKRRLEEVDNELLWYENNIKKQRISYNYKFDNCGYSNFDPEKEAIEIYNGI
>NZ_CP035946.1|WP_172229934.1|133155_134175_+|hypothetical-protein
MFKKISISLLLILNINASEIDDLSLELNKIYNTLPYITKEIKQDQDEFLKSINNCKDDNNCIKTLYETRIKELNTSLENSKTYPKELIEHIKTIQENSTECYKYNYMRFEHGRFTDEPEKCRKLPKLNNFWQDFFRYKDLKFKPKIVDAKPYSSKEVKDTLKYCWDLGLDRRVLKVIGRDNINGIDNDVDYHFIEVDKNGELYFISKIKGKKYIERHKSITISDVLLDGKNYLALSGEYGNILFIEKDFCNYPMKNKDLLDLLRKSNKMKLSNNFYEETKETFIIEYKGSDYILKYKRHNNYYSITFIDILDMVSNIIYQNYSEEIDRCNKFKIFGCYI
>NZ_CP035946.1|WP_070314832.1|130419_130749_+|hypothetical-protein
MNIDEKLALNKFNVDEENAHIIVDENLDKNLALKLCKVCPANLYKMENDKLKFDYAGCLECGTCKMISFHYGKSKDKTSNAMASSNNCGALLKQWKLPNASFGILFKMS
>NZ_CP035946.1|WP_172229931.1|129094_130423_+|FAD-dependent-oxidoreductase
MEETDVIVVGGGISGLTCAYVLAQEGLSVVLLERADIASKNVSGGRLYAHTLRDIKGLEDFDSACERVITCEKLGFLDDKNALSIESRKSIDEDKFANSYSIIQSKFLNYLANKCEDLGVMIASNVLVDTLLIENEKKEILLSRDLNRTLNANEKVVGIKSGEDEMMAKMVVLAEGVNSLLAQSINLNASSDKDCGFVGKNYALGIKEVIELNVNERFALSNNEGLAALFAGSASDYQMGGGFLYTNENSISLGCVIGLGTDFNKASYEVFEQFKKHPMISALIKDAKSVEYSAHLVPEGGYNALSDLGANGVLVVGDAAGFCINLGYTVRGMDLCIMSAKCAARAIAKAFKQNSNALNEYKNELFKQDAFLDMKDFASFGEFLEHNPRIFNEYPKALNELFIDIFKVDGKTLRMKNKIMKFVKKIGFMNLLKDVYKGGKSL
>NZ_CP035946.1|WP_172229928.1|127413_129108_+|AMP-binding-protein
MQIVNENNLGEFLERKALKCKEAIKQNASLLNRFLNLCLVFDECKDDLDNAHILECSSFKELFLKKAKEEDGYFKITQDIKALDFMQLNFLVNQCANFLKSQGLKANDKVASFLQNSLEFVILYFACFKSGIIFVPVNACYKEDELAYIYEKTKFNYIVAEDELLAYVKCDVLKLAKSSFLKSILKHKKDFIMPKINPLDLAMILFTSGTTARPKGCKITHYNLLFAGYFTLHQIGLRQNEVFLSSMPNWHIDLQATALMPSLRANACFVLLKRFSARRFWQQIVFYEANISEVVPKMIELIKLQNKFAREKKHKLRFLLYFLNMSNEKYLEFKKRFKVDLFTSYGLSESIVGCIGDNYYEKMSYPAIGKVFFAYEVIVADIKENKLIPLKANELGTICIKGRLGYELFAGYYEDELNTKNSFIDGYFISNDIGYFDENALFYFFSRNKDLIKINGENISSLEIENLLSSHKKINNASVICISDALACDKIIAFLELKDYPYEEEVNILQKNKELKQIEKELITLNLRLAKFKQVSEFIFLNHLPRNYLGKVRKNVLGEIYGRN
>NZ_CP035946.1|WP_172229925.1|126208_127411_+|L-carnitine-CoA-transferase
MNTPKFGPLSGVRVVFSAIEIAGPFSAQTLAEWGAEVIWIEHSKYADTIRVQPNYKELSRRNLYALSLNIFSDEGKEVFYELIKTADIFIEASKGPAFANKGITDEILWSYKKDLVIAHLSGFGQFGDSYYTNLAAYNTIAQAFSGYLIQNGDINQPMPAFPYTADYMAGLSVAASSLAALHKAKESGVGESIDVCMYEVMLRAGQYYMMDYLNGGEMCPRMIKGKDPLYAGCGLYTCKDGYIVFEVVGGYQVKEIFTELGIGELIGSDEYPEGTQLISRKTSKAALFEEKLDEYFKKLSVKEALDYLASKKIAGAKVLEVSELQSNPQYIARQSFIEWEKEDGTKVKGPNVMPRFKINPAKVWRAMPKYGKDTKDILLSLGLSEGKIEELASKQIINCG
>NZ_CP035946.1|WP_172229952.1|141788_145562_+|hypothetical-protein
MKTHISIDMGAKNNGVFLAHTKDGKIIDKTATNYIFEPSSINFLKKDRTKKRHQRRGFKRTRLARRLLDEIIKKLKKQDLSQAEYELLYGLLKNRGFNYINIEFENDLSDESLEILNEIDAYEFKNCVSKNDYELRLSEIANEYDIDEFCEFLAKQVALITQKDENDKDIYKIADKKSILQMFEALRNEMLKNNKHRERYLKDIKELCQGVEFKSVISKLNISVNEFANIIGNISNYQTRVLRRYFNNKFDDNFDDEKLRLQSIKNINFLSYQGKTELENKRIMLENLKNSSYEYLCKNDPKTSIPPYERMNNKSLQTCNVLILKDNLSKSLKTCLKHILENPNFSSLTMDENGVIKEYNALDENELKVVFQRFLDISKGYLEDIKLYPRGFYKYAKYFKDTICLNDSDFDTLQDFANKYYDELLLAKKGVLSNKLLKPCGCHTPYKNNLKHTHLSILWAKPSGFSEDDVNTFVEFINNKANKIKGNTTLKGFLTHLSKTAKAYQNAFYKALEDEKALLENKTTNDKELKKILEQYEKAYELITSQEIFKNVAKSDKLKTMINQLLQTTNIILDDTKGFNKLCKEHSLQSLLRTSGEKAMCSVFGSDSARLINGKVEMYIDRLAYEIVKDIDLSKSKELHVNIEQNAFNFETAAEKLKLTKRKPKEHFVICPYSGEKLNLNNAEYDHILPRSKCEYNSEANLIPVKSYENLRKKDAYMMFDALHENYKNNLYKQCKVSNEKEFKAFINDTLSKINPDDYTNYKNLKYYEQIAFRHALFMPDESFYTKALELLKQDKLKTTTNGTQKRLAKLIVQKALAKNKDLNIYVKFVDSRLTSAIRHELSKNLPELKKEEKQQSHSHCIDASVVFYIANAAKDSKTTIINDISNKFEPKYDFNEIYLQESIMKSPKSKVYLELEQKEISRKQLFKDTIYSLRYEKAESLSDEHVSILKELDLLMEVKKLKSVKVHINTKKVFDLIFASFKAKDIKTLEKIKFLDKFLVSSVRKDILDIFFDAKNKELIKPKDKGANIEKFYEILVKNGVKDKSEVEKIQKLYIDSFYTGNQKNIKRARDKRRVTYSLSVAGGANFVVRRNTGYEGLANENIATKNYFDKDKIVGIKYYTKNVLPCKIEDIIKILSLSDNAAEIYKLSITKDLPQKIIKLEYEVSQADRHTVKVYFDKVKLGYDLNIFKGDLSLKNEEWVKFCNECLISEFAEFLGKPRDYKASIICDNFSVLGFSYSADRTSKANREIMKDNIC
>NZ_CP035946.1|WP_172229955.1|145555_146509_+|CRISPR-associated-endonuclease-Cas1
MLKHLVVDSYGVYLGLKSARLIVKKDGVLLKEYPLKNLKTISIKSRGVGLSSDLAYACGMRGVKIFFNDFKSHLALHTLHEHKSVNVIKHQILSEQNGKDLALAKELIIGKIKNQRSTILYFSRHKNQEKAKLISNKLSLLIGELKKFKLSKDEIFGIEGSAAAMYFKYLSECELLGDEFINRTGRFAEDNINKALNYGYAILQNHIYKCVINAGLNPYFGVLHSLRSAKPSLVLDIMEEYRSFVVDRNVIKLSNRLKGDFAEHKKFIAQQIINSLSKKLNYNHSKLSLESIMQRQVYKLSGFLCGANNYHSYVFRW
>NZ_CP035946.1|WP_172229958.1|146509_146776_+|CRISPR-associated-endonuclease-Cas2
MYLVSYDIENTKNRTKLFEELKDLGLLNIQKSVFYGELSKSEIKVVKELFKKLCGDEDKAFLCRCKIDLNDTHGYKKADLEQVEFDFV
>NZ_CP035946.1|WP_172229961.1|146806_147379_+|CRISPR-associated-protein-Cas4
MELLKASLIRQFVFCPRIFYFYNFCDITPKYPKHVDFGNEFHVIQDELFKSRTFAKFGLSEYKAYKNQYLEDDELCGVCDMLFVGENEVVVLEFKHSDNLNLSNGAKMQLLAYAKMASKTYAKPCVRMILCSSNHLKHKVFKVFPDDFARLNKIIKDMKNLLDNGVFPNSSASLNACNQCEFFNYCDDRE
>NZ_CP035946.1|WP_172229964.1|147382_148003_-|energy-transducer-TonB
MRFTIIFIIVFCLQLYAVLNIKLDKKEELSKQNAINMNAGNFSFIKPEPIVEEVVKKIPQDEGIKKEIKPKKIVKKHTKKVQNISKTEAKSQPTDLGNNNITKPSPTNGENITNNASNGNNNQQLAMQINALLNKYKKYPKKAKLLNIQGKVAGNFIVSKDGLSINITECPHEIFMKETKQTIKKIKNKIPKQAHNIKISFVINYK
>NZ_CP035946.1|WP_172229967.1|147999_148362_-|biopolymer-transporter-ExbD
MNKPTLNIIPLIDVMLVIIIITLSVQSFVKYKAIDVSPPISKSEIKANTDANVLIINKLGELKYNENTILLDELINLLNKNEKLNIICDEETFFKDFIKVIQILKDNNINNYSIITRLEK
>NZ_CP035946.1|WP_172229970.1|148354_148792_-|MotA/TolQ/ExbB-proton-channel-family-protein
MFELLHLEYEVDIIVFSILAIMNALSIAVMLERVVFYCFFKYENYKSLEEFELSTSKNLIILSIIAQNAPYIGLLGTVFGIMMGFNNIDDTQKIISTLSAALKATAGGLVVAIIALVLFNIFDRCNAKLYVKYKKINNLLSKANE
>NZ_CP035946.1|WP_172229973.1|148791_151245_-|hypothetical-protein
MKKSLIFILLSKYLLAQINVGEIEVFNTNSTPIIENNIYNKEFLNNITNANKDISSILKYNPNVSFDVSNNSSFDGANIKPDNISINGSLFYQNNFTLDGISITNDIDPAGSNTALDDKGQFSTPSQGIFLNTNILDNIELLDSFIPARYGNFTGGIINSKTKNPSKDFSGYINFGFTSSKLTKTLYPDCDYSDKSCQARISTYENDLSNTSSKTWQKYNSNFALSGKFNEKLGILFNFSDLRSIKTKPSNTFNKNTYKIKNINQNLLLKLNYITNNDYILTPSIFYAPSFEQYNASDNKNGYYELNQNNLISKINLFYSNDIFELDSNISYSKLNYNRKSDTSIMKIWQSSNINNWSNSKIAKEGSTTKVNKEQNTLSLDFDFKYFFDNNTLNSGFVFDKTSIKHQIDPSAAIYARATKLTGDCLANDEACLKDNSFNNSGQFLSTLLKYDGTLHKIRQNYYAFYLEDEFNYNDFTFRFGARADYNDLYNNFNLAPRIKASYEFNDDSKIKLGYARYYGRMPYAYILNSMISSSNQTYTRKTAQDSWKLIADFKEAKMSNKKLKTPYDDEIAFLYHQKISNFNFDFKYVFRNSKEQIMTAKSKRLGIIEADGKEKTYYANIGKIKNHNFSLTLANANNIDIFGIKNDFALIANYTIHKKNIQDYTTDLFSLLDSSTMPDKNGRVYDKENIMWEGKVIKIENKPILNFSKPWTLRLATTHKYNNFTLVNFIHYEAGFDYENSYDYILNDTTKMKAYEVTHQKSSILYDLKFKYEQKIKKVDTYASIDITNVFNTKRPQGKYSVLQGRAFYFEIGANF
>NZ_CP035946.1|WP_172229976.1|151317_151917_-|hypothetical-protein
MKKIILSLCFILNINAYDFGLKINEFNSSEVEAFFNYEYAKAKPYNCNLRSLFLPNNQKGRIFKKMFKEENAYKNLRSIACVIRNENYFLWLMFQNNTLKQIKYEINKDYNILKQEIAKKYTLIKESSISLQDYYMDNYDEFDIDENTNCLTNYCKKFSIFKYENNIELVLIDTYFNKIKKSSIIIRDKNLQRLYKKNN
>NZ_CP035946.1|WP_172229979.1|151913_152672_-|sel1-repeat-family-protein
MKKLIFFLFYVYLLASNDIAKDCYKQNSVCLQLAKQLLENSNKEENLLKAREYLQIACNKNNAQACHNLSLTYFNAMMVFKDPVLAKKYAKKACKLGKLNSCYNIANIYKYALANTKQNFQKASKYYDYSCKKGFYASCYELATMWQFDMQNSDFQQIISYHKLACTNNYAASCYHLAYFYYFKKYNLNDLSLAFKYFLKACKLNHNIACAMSASIYERQKNLQKAKEFYKKACKLRVFTSCNNYDRLKAKK

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Crispr_ID: NZ_CP035946_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP035946_2

534452-535327

Orphan

Consensus_repeat	Method
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC	PILER-CR
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC	CRISPRCasFinder
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC	CRT

12 spacers

The CRISPR arrays of NZ_CP035946_2

>merge|NZ_CP035946|2|534452-535327|PILER-CR,CRISPRCasFinder,CRT
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAACTAAATAACTTTCTAATAATTGCAATTCACTAATTAGTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAACTATGGTGTATCGTTTACAACGATACATACTCCATAAGGTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAACCTCTTGTTTAAGACAACAAAAGCAAATGAACAAATGTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAACTCATAACCTAAACTATTAAAATAAAAATCAGAGGTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAACAAAAAATATTTGGAATTCATTTTTTACATTTACGTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAACACATTGTTCGCTTCGTCGTTCTCCAGCCTTGAAAAGTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAACTGAAATCTTTTTTAAGACCGATATAGTGACTTGTGTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAACTTATCTAACACTTTGCTGAAAAGTTCTTGTAAGTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAACAACATTATTTCTTTTTTTATGAAATCTTTTTTTGTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAACATTTATATTTAAATCAGCTTTGAAAATATAAGTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAACGGCATTCGCCACCACAGAAATATATTTGTTTCCGTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAACTTTGATAAACCTATACCTTTTATCACTTTGTCTACTTGTCTAAGAATATTACCCCGCTTTAGGGGATTGAAAC

>NZ_CP035946|2|2|534452-535327|PILER-CR
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC	TAAATAACTTTCTAATAATTGCAATTCACTAATTA
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC	TATGGTGTATCGTTTACAACGATACATACTCCATAAG
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC	CTCTTGTTTAAGACAACAAAAGCAAATGAACAAAT
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC	TCATAACCTAAACTATTAAAATAAAAATCAGAG
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC	AAAAAATATTTGGAATTCATTTTTTACATTTAC
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC	ACATTGTTCGCTTCGTCGTTCTCCAGCCTTGAAAA
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC	TGAAATCTTTTTTAAGACCGATATAGTGACTTGT
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC	TTATCTAACACTTTGCTGAAAAGTTCTTGTAA
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC	AACATTATTTCTTTTTTTATGAAATCTTTTTTT
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC	ATTTATATTTAAATCAGCTTTGAAAATATAA
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC	GGCATTCGCCACCACAGAAATATATTTGTTTCC
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC	TTTGATAAACCTATACCTTTTATCACTTTGTCTACTT
GTCTAAGAATATTACCCCGCTTTAGGGGATTGAAAC

>NZ_CP035946|2|2|534452-535327|CRISPRCasFinder
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC	TAAATAACTTTCTAATAATTGCAATTCACTAATTA
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC	TATGGTGTATCGTTTACAACGATACATACTCCATAAG
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC	CTCTTGTTTAAGACAACAAAAGCAAATGAACAAAT
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC	TCATAACCTAAACTATTAAAATAAAAATCAGAG
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC	AAAAAATATTTGGAATTCATTTTTTACATTTAC
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC	ACATTGTTCGCTTCGTCGTTCTCCAGCCTTGAAAA
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC	TGAAATCTTTTTTAAGACCGATATAGTGACTTGT
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC	TTATCTAACACTTTGCTGAAAAGTTCTTGTAA
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC	AACATTATTTCTTTTTTTATGAAATCTTTTTTT
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC	ATTTATATTTAAATCAGCTTTGAAAATATAA
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC	GGCATTCGCCACCACAGAAATATATTTGTTTCC
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC	TTTGATAAACCTATACCTTTTATCACTTTGTCTACTT
GTCTAAGAATATTACCCCGCTTTAGGGGATTGAAAC

>NZ_CP035946|2|2|534452-535327|CRT
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC	TAAATAACTTTCTAATAATTGCAATTCACTAATTA
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC	TATGGTGTATCGTTTACAACGATACATACTCCATAAG
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC	CTCTTGTTTAAGACAACAAAAGCAAATGAACAAAT
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC	TCATAACCTAAACTATTAAAATAAAAATCAGAG
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC	AAAAAATATTTGGAATTCATTTTTTACATTTAC
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC	ACATTGTTCGCTTCGTCGTTCTCCAGCCTTGAAAA
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC	TGAAATCTTTTTTAAGACCGATATAGTGACTTGT
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC	TTATCTAACACTTTGCTGAAAAGTTCTTGTAA
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC	AACATTATTTCTTTTTTTATGAAATCTTTTTTT
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC	ATTTATATTTAAATCAGCTTTGAAAATATAA
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC	GGCATTCGCCACCACAGAAATATATTTGTTTCC
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC	TTTGATAAACCTATACCTTTTATCACTTTGTCTACTT
GTCTAAGAATATTACCCCGCTTTAGGGGATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP035946.1\|WP_172230870.1\|525503_526283_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235174
NZ_CP035946.1\|WP_172230873.1\|526529_526781_+\|XRE-family-transcriptional-regulator	unknown	unknown	unknown
NZ_CP035946.1\|WP_172230884.1\|537266_537812_-\|ribonuclease-HII	unknown	unknown	gnl\|CDD\|260003
NZ_CP035946.1\|WP_172230858.1\|518217_519513_+\|GHKL-domain-containing-protein	unknown	unknown	gnl\|CDD\|223715
NZ_CP035946.1\|WP_172234359.1\|540377_541679_-\|sodium-dependent-transporter	unknown	unknown	gnl\|CDD\|271367
NZ_CP035946.1\|WP_172230864.1\|520868_522797_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|206779
NZ_CP035946.1\|WP_172230898.1\|547242_548529_+\|SLC13-family-permease	unknown	unknown	gnl\|CDD\|115789
NZ_CP035946.1\|WP_172230880.1\|536061_536277_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP035946.1\|WP_172230878.1\|532581_532959_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP035946.1\|WP_172230882.1\|536613_537111_-\|phage-tail-tape-measure-protein	unknown	unknown	gnl\|CDD\|378413
NZ_CP035946.1\|WP_172230888.1\|538807_540367_-\|phosphoenolpyruvate-carboxykinase-(ATP)	unknown	unknown	gnl\|CDD\|236471
NZ_CP035946.1\|WP_172230861.1\|519492_520773_-\|glutamate:sodium-symporter	unknown	unknown	gnl\|CDD\|223857
NZ_CP035946.1\|WP_172230876.1\|526777_526936_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP035946.1\|WP_172230890.1\|541791_542928_-\|Na+/H+-antiporter-NhaA	unknown	unknown	gnl\|CDD\|181955
NZ_CP035946.1\|WP_172230892.1\|543363_544248_-\|homoserine-O-succinyltransferase	unknown	unknown	gnl\|CDD\|235433
NZ_CP035946.1\|WP_172230886.1\|537771_538827_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224292
NZ_CP035946.1\|WP_172230867.1\|523076_524930_-\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
NZ_CP035946.1\|WP_172234357.1\|524946_525459_-\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|271355
NZ_CP035946.1\|WP_172230895.1\|545695_547066_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340903
NZ_CP035946.1\|WP_172230855.1\|517550_518225_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816

Protein	Function_ID	Function_description	E-value
NZ_CP035946.1\|WP_172230870.1\|525503_526283_-\|hypothetical-protein	gnl\|CDD\|235174	PRK03911, PRK03911, HrcA family transcriptional regulator.	3.60888e-57
NZ_CP035946.1\|WP_172230890.1\|541791_542928_-\|Na+/H+-antiporter-NhaA	gnl\|CDD\|181955	PRK09561, nhaA, sodium/proton antiporter NhaA.	8.72463e-145
NZ_CP035946.1\|WP_172230858.1\|518217_519513_+\|GHKL-domain-containing-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.44041e-42
NZ_CP035946.1\|WP_172234359.1\|540377_541679_-\|sodium-dependent-transporter	gnl\|CDD\|271367	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain. SLC6 proteins (also called the sodium- and chloride-dependent neurotransmitter transporter family or Na+/Cl--dependent transporter family) include neurotransmitter transporters (NTTs): these are sodium- and chloride-dependent plasma membrane transporters for the monoamine neurotransmitters serotonin (5-hydroxytryptamine), dopamine, and norepinephrine, and the amino acid neurotransmitters GABA and glycine. These NTTs are widely expressed in the mammalian brain, involved in regulating neurotransmitter signaling and homeostasis, and the target of a range of therapeutic drugs for the treatment of psychiatric diseases. Bacterial members of the SLC6 family include the LeuT amino acid transporter. An arrangement of 12 transmembrane (TM) helices appears to be as a common topological motif for eukaryotic and some prokaryotic and archaeal NTTs. However, this subfamily which contains the majority of bacterial members and some archaeal members, appears to contain only 11 TMs; for example the functional Fusobacterium nucleatum tyrosine transporter Tyt1.	4.82611e-112
NZ_CP035946.1\|WP_172230864.1\|520868_522797_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|206779	cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain. Methyl-accepting chemotaxis proteins (MCPs or chemotaxis receptors) are an integral part of the transmembrane protein complex that controls bacterial chemotaxis, together with the histidine kinase CheA, the receptor-coupling protein CheW, receptor-modification enzymes, and localized phosphatases. MCPs contain a four helix trans membrane region, an N-terminal periplasmic ligand binding domain, and a C-terminal HAMP domain followed by a cytoplasmic signaling domain. This C-terminal signaling domain dimerizes into a four-helix bundle and interacts with CheA through the adaptor protein CheW.	5.79136e-32
NZ_CP035946.1\|WP_172230886.1\|537771_538827_-\|hypothetical-protein	gnl\|CDD\|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	0.00230735
NZ_CP035946.1\|WP_172230884.1\|537266_537812_-\|ribonuclease-HII	gnl\|CDD\|260003	cd07182, RNase_HII_bacteria_HII_like, Bacterial Ribonuclease HII-like. This family includes mostly bacterial type 2 RNases H, with some eukaryotic members. Bacterial RNase HII has a role in primer removal based on its involvement in ribonucleotide-specific catalytic activity in the presence of RNA/DNA hybrid substrates. Several bacteria, such as Bacillus subtilis, have two different type II RNases H, RNases HII and HIII; double deletion of these leads to cellular lethality. It appears that type I and type II RNases H also have overlapping functions in cells, as over-expression of Escherichia coli RNase HII can complement an RNase HI deletion phenotype. In Leishmania mitochondria, of the four distinct RNase H genes (H1, HIIA, HIIB, HIIC), HIIC is essential for the survival of the parasite and thus can be a potential target for anti-leishmanial chemotherapy. Ribonuclease H (RNase H) is classified into two families, type I (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type II (prokaryotic RNase HII and HIII, and eukaryotic RNase H2). RNase H endonucleolytically hydrolyzes an RNA strand when it is annealed to a complementary DNA strand in the presence of divalent cations, in DNA replication and repair.	3.61054e-71
NZ_CP035946.1\|WP_172230882.1\|536613_537111_-\|phage-tail-tape-measure-protein	gnl\|CDD\|378413	pfam10145, PhageMin_Tail, Phage-related minor tail protein. Members of this family are found in putative phage tail tape measure proteins.	3.02914e-08
NZ_CP035946.1\|WP_172230888.1\|538807_540367_-\|phosphoenolpyruvate-carboxykinase-(ATP)	gnl\|CDD\|236471	PRK09344, PRK09344, phosphoenolpyruvate carboxykinase.	0
NZ_CP035946.1\|WP_172230861.1\|519492_520773_-\|glutamate:sodium-symporter	gnl\|CDD\|223857	COG0786, GltS, Na+/glutamate symporter [Amino acid transport and metabolism].	1.51273e-17
NZ_CP035946.1\|WP_172230895.1\|545695_547066_-\|MFS-transporter	gnl\|CDD\|340903	cd17345, MFS_GlpT, Glycerol-3-Phosphate Transporter of the Major Facilitator Superfamily of transporters. Glycerol-3-Phosphate Transporter (also called GlpT or G-3-P permease) is responsible for glycerol-3-phosphate uptake. It is part of the Organophosphate:Pi antiporter (OPA) family of integral membrane proteins responsible for the transport of specific organophosphates or sugar phosphates across biological membranes with the simultaneous translocation of inorganic phosphate into the opposite direction. The GlpT group belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.09408e-160
NZ_CP035946.1\|WP_172230898.1\|547242_548529_+\|SLC13-family-permease	gnl\|CDD\|115789	pfam07158, MatC_N, Dicarboxylate carrier protein MatC N-terminus. This family represents the N-terminal region of the bacterial dicarboxylate carrier protein MatC. The MatC protein is an integral membrane protein that could function as a malonate carrier.	7.09019e-22
NZ_CP035946.1\|WP_172230892.1\|543363_544248_-\|homoserine-O-succinyltransferase	gnl\|CDD\|235433	PRK05368, PRK05368, homoserine O-succinyltransferase; Provisional.	8.97335e-161
NZ_CP035946.1\|WP_172230867.1\|523076_524930_-\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
NZ_CP035946.1\|WP_172234357.1\|524946_525459_-\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|271355	cd00446, GrpE, nucleotide exchange factor GrpE. GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases. In bacteria, the DnaK-DnaJ-GrpE (KJE) chaperone system functions at the fulcrum of protein homeostasis. GrpE participates actively in response to heat shock by preventing aggregation of stress-denatured proteins; unfolded proteins initially bind to DnaJ, the J-domain ATPase-activating protein (Hsp40 family), whereupon DnaK hydrolyzes its bound ATP, resulting in a stable complex. The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent. Over-expression of Hsp70 molecular chaperones is important in suppressing toxicity of aberrantly folded proteins that occur in Alzheimer's disease (AD), Parkinson's disease (PD), amyotrophic lateral sclerosis, as well as several polyQ-diseases such as Huntington's disease and ataxias.	1.08091e-46
NZ_CP035946.1\|WP_172230855.1\|517550_518225_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.16223e-67

>NZ_CP035946.1|WP_172230878.1|532581_532959_+|hypothetical-protein
MKKILSIFCLSYITLFAAECNVELTKIDNQITKAKSAKKINQEKLTYLNSLKERIQSNCNNGLIDNTSLRQIKEEEKHSYEMQKITKAKDKLKAQEAKLEEKERKIKQKHQDNINKINAKKDKKK
>NZ_CP035946.1|WP_172230876.1|526777_526936_+|hypothetical-protein
MISDKERLELDLIIANIKLSKKAMIKKYLKKIYSKILINIKHNSDIVEKKIS
>NZ_CP035946.1|WP_172230873.1|526529_526781_+|XRE-family-transcriptional-regulator
MLETNDIFNLLHNAIESKENGKKISLQKMSQRLDVPMRTYQDWRLGNSKPQAVMAVFTMLCELDDDELLFLMSKIKKQLKDKN
>NZ_CP035946.1|WP_172230870.1|525503_526283_-|hypothetical-protein
MINKSEYILKSIIKTYLEEQNPIGSMLLQDNLNVPASTIRVYFKRLDLEGYICKLHASGGRIPTQKAMQQYWQNYFSKQKEITLKNTYTLLNINKDYELFAMLIDNFDYELKEVLNINEQFILLNFNAMQAILDYSEDRFNFFSQFLNLNLASIKIILNKLALNYELKQINKMQNDGIYYLCGEKKFANIVKLNSFNSILNSNLLDYFNNDLVFSELFLPENMGVSLDCFYLNKKCKLILAGSIYTNYEEVLNSLKEAM
>NZ_CP035946.1|WP_172234357.1|524946_525459_-|nucleotide-exchange-factor-GrpE
MQDECVNEEALNYENEIINLKAELENKTKEFDALKDSFLRANADFENIKKRLEKEKLSAVEFAQEGFLKELLPVLDALENASNFEADDEFSKKLLEGISLTLDLFKNMLKKHSIVEINPNIGDEFNPEIHEAMMFSEVEGMPSQQIAAVFAKGYLLKDRTIRACKVSVSK
>NZ_CP035946.1|WP_172230867.1|523076_524930_-|molecular-chaperone-DnaK
MSKAIGIDLGTTNSCVAIFERGEKKVIPNKEGKNTTPSIVAFTDKGEVLVGDSAKRQAVANPEKTIYSIKRIMGLMMNEDNAKEAAKHLPYKIVDRNGACAIEVAGKTYTPQEISAKVLMKLKEDAESFLGEKVSDAVITVPAYFNDAQRKATKEAGTIAGLNVLRIINEPTAAALAYGLDKANAEKIAVYDLGGGTFDVTVLETGDGVVEVLATGGNAFLGGDDFDNKLIDFLAEDFKKEQGVDLKQDKMALQRLKEAAENAKKELSSTNQTDINIPYITADSTGPKHLVKTITRAQFETMIDSLVQETIKKIDQVIKEAGISKSEIKEVVMVGGSTRVPLVQEEVKKVFGKELNKSVNPDEVVAMGAATQAGIIKGDVKDVLLLDVTPLSLGIETLGGVMTKIIEKGATIPTKKQQTFSTAEDNQNAVTINVLQGEREFSRDNKSLGNFNLEGIPAAPRGVPQIEVTFDIDANGILTVSAVDKASGKQQEIKITGSSGLSDEEIEKMVKEAEANKAADQKRREVVDTKNQAQALIHQVQKSLNELGDKVDANTKSDIENAINELNSSVNNDNASKEELDEKMKKLSEISHKLAENLYKKDDNAKAKDNAQDAEVE
>NZ_CP035946.1|WP_172230864.1|520868_522797_-|methyl-accepting-chemotaxis-protein
MKLAQKISLSMASLIIILLLILSFIENNNTKKIILNDYNSSIKQELKLKNAYINEYLQSRIKQIQNIANKFQIEKDFSIEKIQEIIKSNNEILDFKGIFIGLNNGNTYKAEIDKTFKLLQNFDGRTRAWYKEALLSKKAGISSVYLDISTKEQTSTIYAPIIINDKLKAVIGANILIKDFAHTITNIKSSEHINTIIIDKNKKVIASNDEKDLTKTSWLDNITLSNNDLFFTFTKDNKDYNAHCVFNTLAQYHICSTILNEVINNTLSSARNTTLLYFLIFTIIVISFLTFIVNYFLKPFAIINKALDDFFAFLNYKITNPSKININTKDEFFQMATLINNNINTTQDALKQDFKALEEALQNAKKIEMGDLSVRINLNPANPQLKKLKDVLNSMLQTLENKIGKDINTIEKIFKEYSNKNFTSKIANAKGAVELASNMLGEQIKQILKDNLLIAQELKNKSNILKNNVKEINDGAIKQANNLQESAAAIEQMSASMHSLNQQSREVIQNTEDIKNVIIIIKNIAEQINLLALNAAIEAARAKEHGRGFAVVADEVRKLAENTQMSLSEIEANVNILIQAINNMNSSINEQTQAITQINEAISTIDELTNINVEIAATTNEISNEVDLIASNAVNEVNKNKF
>NZ_CP035946.1|WP_172230861.1|519492_520773_-|glutamate:sodium-symporter
MNNILDLFYAIILMCVFLFLGYLIKEKIKFFKYSYINSSIIGGFLFLFINSFAIIKIKQEYIEFYRFLPSILIIPVLACAALGIKFNLVIKTSKNILILALIISAVSVLQFIAGLFSQYIFDYDFYKSFGLELSIAYAGGHASAGVLASILRQLNINYYEQAQSVAITLATFGLLGAIVLGILFINIAKKYKICFNDLEEKEEKLKIHLSTFILHLIFILFICFIAYFVLKIIKFYDVFILKNISIWAYTMIIMLFAWLIIIKAKKAHLINNQIKSKISSIFSEFAIICAISSMEFKIVAYYWQAILYMIIIGYILTASALYFMCKYLIKEDYFAYMMATFGCLCGVFLTGILLLKLLKVDYKSQITINFSLAYTLSSIFYFAILNYIVISLITNGLNQTMLFISLLAFSFIFLAIIVAKLKFFKS
>NZ_CP035946.1|WP_172230858.1|518217_519513_+|GHKL-domain-containing-protein
MRKKIFLAIFFTSFSFIFLSLVFLLFLFDKTLQKQAFYELEEEFVFVENNLEKILKKEFFINNYRITLLLNNGEVVFDNFANSLDNHLNRFEIQNALKNDYAISSRFSNSLKKDSFYLAKKIIFKQKEFILRLSSDKENINTLIKNTALFLLIIFIFSVCVCILIANFLSKQILKPLKNLDLNNPSKDRVYKELHDFIDKIEENNENTKRLRVEFTHNVTHELKTPLTSIMLSSEMLKNNMVKKEDESNFINLIYNQSCALLVMIDEIIKISFLEQNKDIKKLNIRIDLLLLKIIKDLEFKLKEKNINIKTKLIKYSFLCNESLLYTMLFNLIENAIKYNNDNGIIDIKMYERKDILFLSIKDSGIGIKKEFFDRIYERFFRICSSRSKEIEGTGLGLSIVKKIAKIHKIKIKLISAENEGSEFILRFKKF
>NZ_CP035946.1|WP_172230855.1|517550_518225_+|response-regulator-transcription-factor
MENSARIYILEDEKSVNELINYALSNINLNVFSFYNSKELFKALNEQKCDILVLDIMLPNQDGFSVLKELKENANTKDIEVILLSALDSEFNKVKGLDLGASDYITKPFSMLEFIARIKGILRRINKDDVLVFKNLHIDFKTRQVMLHNEDIKLTLKEFELLALLIKNPKKCFSKEELLDCIWKENFKTRTIDIHINTLRAKLKDYAKYIKTIHCVGYRFDLNA
>NZ_CP035946.1|WP_172230880.1|536061_536277_-|hypothetical-protein
MKEIHKVKFAIFYAGKIISAIYLAYYLISVVASLFIGLGFAVLVSIDISAVVLFACFHYLSKKELENYLKQ
>NZ_CP035946.1|WP_172230882.1|536613_537111_-|phage-tail-tape-measure-protein
MALGFSTDETSRMLNTLNTHFKLNSKDALSFGDEIFTLSNKFNASSKSIANLTSKISANAKMFSLNAKESAVLSAAFLQVAKDEETAENSINSLNEKLLNITSLGDNLKFSLTNIGINTQQIEIGMKIDPKATLDLFFKRLKNTKKANEKQYNELLSSMFSANAS
>NZ_CP035946.1|WP_172230884.1|537266_537812_-|ribonuclease-HII
MNGYLQRIIMIGIDEAGRGALAGPMVLAACKLNNAINNLNDSKKLSEKKREKLFEEIIQNSTYHIIFIDNFTIDELGISLSYKKALTEFKEHFKDYNDELLFDGNTDYKSGIKTQINADEIYPCVMAASILAKVSRDRFMKNIINEYCFYKHKGYGTKLHKELIQKFGLSSLHRKSFCKNI
>NZ_CP035946.1|WP_172230886.1|537771_538827_-|hypothetical-protein
MQIQNYDYFLENKPSKIGLKARKIDTLPNFCVIKGAFSCGKKSLCLNLVKDDFVFLDLSDIRLSNLNIYEFVEKNNIYNLVCFNANKNFSLPTNIKKCFITTNNNDFSQDNFISTKLNYLDYEEFISFSKQNQNNHISEYLLLGQNPVNIGKTPYEAHKNIQNILRQHYSLSKMQILCKIADYIGYQCSILKIFNDYQIKIGKNDFFACLKEFENNFILYWIKHINKNVKKPYFTDFAIKNAISIKKEFKKIYENLIANELIMSYDEIFFSDDFDFIIPNANIAIIADAFIYKDLISVKQKKLSFLAKKNNISNILLLSLNENFTFKYDNVNIICLKLDEWLLTKDNNDWN
>NZ_CP035946.1|WP_172230888.1|538807_540367_-|phosphoenolpyruvate-carboxykinase-(ATP)
MLESIGIKAKEIFYNLSYDELREHEIKCHEGEVCQNDTFAVDTGVFTGRSPKDKYFVNSYPSNEKIAWGNVNRACTKEIFNDNLRRAKEFLNDKSLYVMDVFCGASLASRKKVRFITQIAWQAHFVKNMFIRPSEEELKDFKPDFTIINACKLKNELYKMHDLNSDVFVGFDIENNIGLILGTWYGGEMKKGIFSMMNYWLPLQGKMSMHCSANVGKNNDVCLFFGLSGTGKTTLSTDANRALIGDDEHGWDENGVFNFEGGCYAKCINLSEENEPEIYNAIRRNALLENVVITCSGDVDFCDASKTENTRVSYPIEHIENHQKSLQAGHPSNIIFLCADAFGVLPPVSKLTNKQAMYYFLSGYTAKVAGTERGVKEPIATFSACFGEPFMPLNPTLYAELLGKKIKEHNVNVYLVNTGWSGGGFGVGARMSIKATRACVNAILDGSINNCEFYNFDVFNLATPKELKGVDTKLLYPNKTWENEAEFIKARNKLASMFIENFKRYANSAKEFEDANPKL
>NZ_CP035946.1|WP_172234359.1|540377_541679_-|sodium-dependent-transporter
MGFILSLTGGAIGLGNAWKFPTMVGQNGGSAFILIFILFCLSIGLVLFLAEMMLGKSTRDNLANSYFKTAKFYPKYMKFGAIAMLSGIFVLSFYLIILSWVFQYLFYSFSLPNTNDKALELFKNAVSSNVKINILCFLFCLFCTLYFVKKGIVLGIERLNVVLMPLLCLIMIFLLFYSISEGAFVKAIKFIFYPDFSKLNFKSILDALGLSLFTLCLGIGCISTYAANSQEDTNILKASLLVIFLNITIGLLMAVVVFAFAFLSDENLLNDAALVFVSLNVLFSKLGLIGNILAFLFFLALFFAGITSAVSMIEPFTFYLEKKIGRNKSILYIGIIVFILGLSCIFSMCNIIKIDVFYILDFLTSNIMLPVGVFFTSIFLGFFANKIIFIKILRKFMKKRLIFLYFTFVKYICPIIIILVFINNFYPLSKLLN
>NZ_CP035946.1|WP_172230890.1|541791_542928_-|Na+/H+-antiporter-NhaA
MVKFFKSELFAPILLLFVSFIAICLNNSPLSELYNLCVNYKFGIIFGDLELIKPMLLWVNDGLMAIFFFWVGLEVKKEFMCGELKEIKAALLPLFAACGGVVVPALVYYVFNFSDDIRKLGFAIPTATDTAFALGILLLLGKKVNKSLYTFLLSLAIFDDIAAIVIIALFYTNDLSILALSLAGIGVVLLFVLNFLNVTIKFFYILVGTFIWLCVLKSGVHTTLAGMLCAFFIPLKSKEDEHFLEHIMHELTPFIQYLILPIFALFNAGVVINGIGLENFNSVFFGIFLALFFGKQFGVFAFCLLAKKLNIIINASLAELYGVCILTGIGFTMSFFINTLVFEEHQLLFDSARLAVVMASFCSAILGFIWLKIVLSKK
>NZ_CP035946.1|WP_172230892.1|543363_544248_-|homoserine-O-succinyltransferase
MPLVIPKEIPAFKILKQNVFVMDTKRAFTQDIRTLEILIINLMPTKIQTENQLLSLLANSALQINLSFLSTQSYVGKNTPISHIEKFYQGLDDFKNKRFDGAIVTGAPVEQMEFEDVKYWEELKEIFTYLKNNVTSTIYICWGAMAALYHFYNIKKHNLTEKCFGVFTHKIHNKDLILSNTDEIIKMPHSRYSYIDETELNACKELKILLKSDEAGVALLRDKKDIFILGHLEYDKDTLDLEYKRDLANNTKTQKAKNYYDENNEILFTWRSSANTIFSNWLNYDVYQSTPFVL
>NZ_CP035946.1|WP_172230895.1|545695_547066_-|MFS-transporter
MLNFLKPTKKDIKIPEDKVLQTYKSYRTLSLSGAFVGYMGYYLVRNNINLSTPLIQNQLEVSKAEIGLITGSMLIAYGVSKGLMSALSDKADPKRYMALGLILCALINIILGFCNSLHAYIACVIMLGVFQGMGVGPSFITLANWYPKKERGIYTAIWNISHNLGGGIVSPIISKSVFVLSPVLGITVADLNEKYWQISHCYVPAVLAILISLYVLYAIKGSPENEGLPSIKEINAMRGYEDVLSTQKAKSDLSSLEIFKSYVIKNPGAWGVALMDTFVYLVRFGVISWLPIYLLEAKGFTKGQMHTAFLFFEWAAIPSTLFAGYLSDKIFKGARMPPAIIAMIIIFFMILGYFTSNNLNLVIFYAAMTGCLIYVPQFLCSVQTMEVVPSFAVGSCVGLRGFMSYVVGAALGTMLIGKMVEVFGWNAGLYILLSSCILCILCAFFVHIYSKKLNKI
>NZ_CP035946.1|WP_172230898.1|547242_548529_+|SLC13-family-permease
MLIFIVFCIFASIFLGYKFKINIGLFALAFSYIIACFGMNLSVKELLNMWPLSIFFVILSVCMFYNIASANLTLEKLANLILIKFQNHQRFLPFVIYFIASLIAALGAGFYSVLAFMAPLSFVLCDKLKLNKLICAMAINYGALSGANFVSSQSGIIFRNLMQDAGLSQNEAFINAFWIFFASFILPIFVLGIYTLFAKTQSVKITLHLNNISFDFKQKITLILMGLLIFIILLFPILNIIFQDNKTIAFLNKKIDIAFICIIFVIIALMLNLAEQNKIINLIPWQTLLMIVGVGMLISLAIKAGMTNELKSFVSNNINKNFIPLIMMIIAAFMSLFSSTLGVVAPALFVLVPDIASASGVNACIIFVCIIIGAQASAISPFSSGGSLILGSIKQEQKDLMLKELMFKAVPIGFFAAFILCFVLTLFI

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Crispr_ID: NZ_CP035946_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP035946_3

584732-584869

Orphan

Consensus_repeat	Method
AAAAAAATAATTTTTTTCATACAAACTCCTTAAAAATAATAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP035946_3

>merge|NZ_CP035946|3|584732-584869|CRISPRCasFinder
AAAAAAATAATTTTTTTCATACAAACTCCTTAAAAATAATAAATAGTTATTATTTTATTATCTTATCGTTTTTTTTTTTTTTGTTAAACAAAAATAAAAAAAATAATTTTTTTCATACAAACTCCTAAAAAATAATAA

>NZ_CP035946|3|3|584732-584869|CRISPRCasFinder
AAAAAAATAATTTTTTTCATACAAACTCCTTAAAAATAATAA	ATAGTTATTATTTTATTATCTTATCGTTTTTTTTTTTTTTGTTAAACAAAAATA
AAAAAAATAATTTTTTTCATACAAACTCCTAAAAAATAATAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP035946.1\|WP_172231020.1\|585443_585980_+\|ATP-dependent-protease-subunit-HslV	unknown	unknown	gnl\|CDD\|235477
NZ_CP035946.1\|WP_172231002.1\|579205_579943_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223521
NZ_CP035946.1\|WP_172231038.1\|592539_593373_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|99707
NZ_CP035946.1\|WP_172231023.1\|585981_587301_+\|HslU--HslV-peptidase-ATPase-subunit	unknown	unknown	gnl\|CDD\|235364
NZ_CP035946.1\|WP_172230996.1\|577601_578360_+\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NZ_CP035946.1\|WP_172231041.1\|593365_594346_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP035946.1\|WP_172231032.1\|590575_590959_+\|stage-V-sporulation-protein-S	unknown	unknown	unknown
NZ_CP035946.1\|WP_172230999.1\|578472_579213_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213224
NZ_CP035946.1\|WP_172231035.1\|590942_592538_+\|pilus-(MSHA-type)-biogenesis-protein-MshL	unknown	unknown	gnl\|CDD\|274176
NZ_CP035946.1\|WP_172231008.1\|580749_581679_-\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|182400
NZ_CP035946.1\|WP_172230984.1\|574681_575035_+\|diacylglycerol-kinase	unknown	unknown	gnl\|CDD\|260133
NZ_CP035946.1\|WP_172230990.1\|575767_576472_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224495
NZ_CP035946.1\|WP_172230987.1\|575031_575757_+\|Nif3-like-dinuclear-metal-center-hexameric-protein	unknown	unknown	gnl\|CDD\|376614
NZ_CP035946.1\|WP_172231026.1\|588177_589857_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP035946.1\|WP_172230993.1\|576481_577600_+\|3-deoxy-D-manno-octulosonic-acid-transferase	unknown	unknown	gnl\|CDD\|235589
NZ_CP035946.1\|WP_172231005.1\|579935_580757_-\|nickel-ABC-transporter-permease-subunit-NikC	unknown	unknown	gnl\|CDD\|236687
NZ_CP035946.1\|WP_172231011.1\|581680_583219_-\|nickel-ABC-transporter,-nickel/metallophore-periplasmic-binding-protein	unknown	unknown	gnl\|CDD\|173854
NZ_CP035946.1\|WP_172234365.1\|587300_588161_+\|GTPase-Era	unknown	unknown	gnl\|CDD\|234624
NZ_CP035946.1\|WP_172231029.1\|589853_590576_+\|type-4a-pilus-biogenesis-protein-PilO	unknown	unknown	gnl\|CDD\|173303
NZ_CP035946.1\|WP_172231017.1\|585000_585444_+\|50S-ribosomal-protein-L9	unknown	unknown	gnl\|CDD\|234659

Protein	Function_ID	Function_description	E-value
NZ_CP035946.1\|WP_172231020.1\|585443_585980_+\|ATP-dependent-protease-subunit-HslV	gnl\|CDD\|235477	PRK05456, PRK05456, ATP-dependent protease subunit HslV.	5.50894e-105
NZ_CP035946.1\|WP_172231002.1\|579205_579943_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.16112e-82
NZ_CP035946.1\|WP_172231038.1\|592539_593373_+\|ATP-binding-protein	gnl\|CDD\|99707	cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.	1.90061e-06
NZ_CP035946.1\|WP_172231023.1\|585981_587301_+\|HslU--HslV-peptidase-ATPase-subunit	gnl\|CDD\|235364	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU.	0
NZ_CP035946.1\|WP_172230996.1\|577601_578360_+\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	1.13439e-48
NZ_CP035946.1\|WP_172230999.1\|578472_579213_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213224	cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters. The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.	3.92009e-75
NZ_CP035946.1\|WP_172231035.1\|590942_592538_+\|pilus-(MSHA-type)-biogenesis-protein-MshL	gnl\|CDD\|274176	TIGR02519, related_to_type_II_protein_secretion_protein, pilus (MSHA type) biogenesis protein MshL. Members of this family are predicted secretins, that is, outer membrane pore proteins associated with delivery of proteins from periplasm to the outside of the cell. Related families include GspD of type II secretion (TIGR02517), the YscC/HrcC family from type III secretion (TIGR02516), and the PilQ secretin of type IV pilus formation (TIGR02515). Members of this family are found in gene clusters associated with MSHA (mannose-sensitive hemagglutinin) and related pili, and appear to be the secretin of this pilus system. [Cell envelope, Surface structures].	1.20497e-69
NZ_CP035946.1\|WP_172231008.1\|580749_581679_-\|ABC-transporter-permease-subunit	gnl\|CDD\|182400	PRK10352, PRK10352, nickel transporter permease NikB; Provisional.	2.12464e-133
NZ_CP035946.1\|WP_172230984.1\|574681_575035_+\|diacylglycerol-kinase	gnl\|CDD\|260133	cd14264, DAGK_IM, Integral membrane diacylglycerol kinase. This mostly bacterial family of homo-trimeric integral membrane enzymes, the products of the dgkA gene, catalyzes the ATP-dependent phosphorylation of diacylglycerol to phosphatidic acid. Escherichia coli DAGK participates in the membrane-derived oligosaccharide cycle (MDO cycle) by recycling lipids to restore phosphatidylglycerols that were used up in the biosynthesis of MDOs. DAGK also recycles diacylglycerols that are produced during the biosynthesis of lipopolysaccharides (LPS) back to phospholipids. DAGK is not the main source of phosphatidic acid in de-novo biosynthesis of glycerophospholipids. Escherichia coli DAGK has low activity as an undecaprenol kinase.	7.64072e-35
NZ_CP035946.1\|WP_172230990.1\|575767_576472_+\|hypothetical-protein	gnl\|CDD\|224495	COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only].	2.09132e-41
NZ_CP035946.1\|WP_172230987.1\|575031_575757_+\|Nif3-like-dinuclear-metal-center-hexameric-protein	gnl\|CDD\|376614	pfam01784, NIF3, NIF3 (NGG1p interacting factor 3). This family contains several NIF3 (NGG1p interacting factor 3) protein homologs. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown.	2.80393e-55
NZ_CP035946.1\|WP_172230993.1\|576481_577600_+\|3-deoxy-D-manno-octulosonic-acid-transferase	gnl\|CDD\|235589	PRK05749, PRK05749, 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed.	3.29975e-95
NZ_CP035946.1\|WP_172231005.1\|579935_580757_-\|nickel-ABC-transporter-permease-subunit-NikC	gnl\|CDD\|236687	PRK10417, nikC, nickel transporter permease NikC; Provisional.	1.9795e-118
NZ_CP035946.1\|WP_172231011.1\|581680_583219_-\|nickel-ABC-transporter,-nickel/metallophore-periplasmic-binding-protein	gnl\|CDD\|173854	cd08489, PBP2_NikA, The substrate-binding component of an ABC-type nickel import system contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding domain of nickel transport system, which functions in the import of nickel and in the control of chemotactic response away from nickel. The ATP-binding cassette (ABC) type nickel transport system is comprised of five subunits NikABCDE: the two pore-forming integral inner membrane proteins NikB and NikC; the two inner membrane-associated proteins with ATPase activity NikD and NikE; and the periplasmic nickel binding NikA, the initial nickel receptor. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NZ_CP035946.1\|WP_172234365.1\|587300_588161_+\|GTPase-Era	gnl\|CDD\|234624	PRK00089, era, GTPase Era; Reviewed.	6.99497e-99
NZ_CP035946.1\|WP_172231029.1\|589853_590576_+\|type-4a-pilus-biogenesis-protein-PilO	gnl\|CDD\|173303	PRK14842, PRK14842, undecaprenyl pyrophosphate synthase; Provisional.	0.00916298
NZ_CP035946.1\|WP_172231017.1\|585000_585444_+\|50S-ribosomal-protein-L9	gnl\|CDD\|234659	PRK00137, rplI, 50S ribosomal protein L9; Reviewed.	5.8738e-42

>NZ_CP035946.1|WP_172231011.1|581680_583219_-|nickel-ABC-transporter,-nickel/metallophore-periplasmic-binding-protein
MKKVLVLLNLIFALLNASELKFATQKNVGELNPHLYSPNEMFAQNMVYEGFVAYSEDNKIIPALATSWDISKDGLVYTFYLRKGVKFSNGEDFNANAVKANFDAIFANKQRHISFALVRAFDRLEVVDDYTVKIHLKHIYEPTLRELSLIRPFRFIAPSAMIDGNTKDGIKAAIGTGKWIFVDTKLGVYDKFKKNENYWGEKAKVDDILCKVIPDPSTRVIALKTGEIDYVYGMGAIGLEDFVNFKDTEFKTIISEPLSTVLIALNTGANVTKDIKLRKALNMAIDKDAISKYVFYGTQKRADFFYPENVPNGKIDRKAYEYNPKKAQKMLIDNGYKLGKDKMLYKDNKPLEIRLSFIGTNAEHKAIAEVMQSQLRQIGINLILNADESTIFYKRQRTGEFDMTFNETWGAPYEPEIFMASMIAPSHADYMAQKGLKQKALIDSNIEKIAQTMDNEEKIKLAKEILTILHDEAVYIPIVYTTNKGVASPKIKGYKSSILKYAIPFDDIEFEK
>NZ_CP035946.1|WP_172231008.1|580749_581679_-|ABC-transporter-permease-subunit
MAKFIIKRILYAILCLFLASIFIFLLLRLNGTDAVLNYLYVSGIAPTDEAINNARIMLGLNESIYSQYIKWISGALRFDFGYSYFTNRAIGPDLFEYLINTLKLTSFAFLLTLAISFPFGILSAIYKNRFFDYFVRAFSFLGVSTPNFWLGLLFILFFSVKLGWLPPFGIGGFSHIIMPALAISFMSIAINARFIRVNFLESSNERYITYAKMRRVSKSKIYIKHILTNSLLPLITAFGMHIGELFGGALVIENIFAYPGVGRYAVGAIYNSDYPVIQAFILMMCFVFILINLITDIVYVIIDPRIKYE
>NZ_CP035946.1|WP_172231005.1|579935_580757_-|nickel-ABC-transporter-permease-subunit-NikC
MNKKYFEYFIYALCFFIVFVAVFGSYFTPYDPNEIDLANKFAQNSALNIFGTDHLGRDIFSRILAGAKISILSTFATIVLIIVLGTIVGFIAGFGNAKLDNLLMRICDVFMCFPTIVLALFFVGILGTGLVNVIIAIAMTHWAWYARIIRSIVLKLKNTEYVLVSKLCGSSNFWIFKKHFAKPILMQLLVLSSLDIGHIMLHISGLSLLGLGVKAPQSEWGIMIADTKDYILTHYELVLYPGIAMLVVIVAFNILGDILRDKFDNNIKEDAHG
>NZ_CP035946.1|WP_172231002.1|579205_579943_-|ABC-transporter-ATP-binding-protein
MDEIIVKDLNVNYGDIKLLDEINIKVSSGKIIALLGSSGSGKSLLATTIMGYLANNLKLSGNISLKSGEALKNKLAFIMQNPRTAFNPLFSIRNCVYESLQAWGLKKDIERIKNVFNSVGLEENILSLYPHECSGGMLQRVMIAIALLSNASFIIADEPTSDLDLLSQAAVLDILEKLKQEKNMGILLITHDFGVVARLADYVYIIEEGKIIEQNDCLKLFLNPKTSLSSNLIKAHLALYGEFNA
>NZ_CP035946.1|WP_172230999.1|578472_579213_-|ABC-transporter-ATP-binding-protein
MLELKNICFSYKSGALFSKKQQKVLNNISISLKSGKSLGVLGISGSGKSTLAKIIAGIYKMDSGEVVFDGKKQDIQIVFQDSRASFNPDFSVYDAISEPMVNAGFNNKKIDEKIKELFKRVCLDESILYKKCSMLSGGMLQRLSIARAMALKPKIIILDEATSSLDVVVAAEILKMFKSLQNEFSYIVITHDLRLVKLFCDEVIVLDNGIIAERQILTKDLKLTSDIGIKLSNAILKPYPKGYDKH
>NZ_CP035946.1|WP_172230996.1|577601_578360_+|RluA-family-pseudouridine-synthase
MKQEKAYKILAKQENISNNAAKELIDSGLVMYAGKRLEIARGLMPINATLKLAKIEVQKIFEDENILAINKPIGIQSDMIKNNYILLNRLDKDTSGIVLFAKNEEFYKKAIEEYKALRVKKLYLAIVSGKVIDEMIIDDNILSIKNKQAFSKLSNSKNSKEAYTKVSPLLIEGKKSLVKVQILTGRTHQIRVHLNSKNYGILGDVKYSRIPSNRLMLHCARTSILNYDFKSAMPNDFLKEFNLNGLNLDFII
>NZ_CP035946.1|WP_172230993.1|576481_577600_+|3-deoxy-D-manno-octulosonic-acid-transferase
MYFIYILLNIFLYFLCLIALPFLSLKSKYNKFYLKLFPLKLAKKADIHFHYASFGEINALSPLIKELKKQGYTVLLTCASKTGYEAGKKIDDNCFFLPFEILLFFWLKKAKKLVVFEAELWLILSRIYKNSCILLNARISKKSFRKYYRFKFLYEKIFENYTMIYAQSNSDARRLKKLGAKNISVFTNIKIINPIKLKEKLKKNKELIIIASTHKGEEEIILNKLDKGFLKNKALIIAPRHPERFKQVYELIKDYAKKNNLSFSSFSVNKEAYLEKDIFLLDVLGKLVDFYAISDYVILGGSYIDNIGGHNFYEAAYFNNKIISGNYIFNQIQMLKYIKNIKISDDIDFSDVKNAFIKSDFTFVDLVNIVKG
>NZ_CP035946.1|WP_172230990.1|575767_576472_+|hypothetical-protein
MNKHLSQLVELVKIDSKIDSFLPEIEKAKKNSEQIKHDLEHSKKIIEKIKTSIKEINESKVKTDNQIAKFSAKLEENAKKIASVKTEKESSALRLEDEIAREQLDSLNSDIERFEKQQASKKDEIKEVEAKIKSLETDFSKAQLEEEEKLNEIEKQRSVIYTEKENLTSNIDKKVLGFYEKIRKWARNSAVVPVKKQACYGCFMQLNSKVFSQVVKGDEIINCPHCGRILYYEA
>NZ_CP035946.1|WP_172230987.1|575031_575757_+|Nif3-like-dinuclear-metal-center-hexameric-protein
MKVSQIYEYLNSISPFDTQEDWDNSGLLVSNDDTCKKIYLSLDLDLDLLESLEDDSLIITHHPLIFKGLRKIDNSYVSNAIKALIKKNCALIAMHTNYDLSHLNTYFIEEILGKKIVLKEGFLAYFKNDFQSIEDLADFLKQRLKVKNINISYARKNIQSELIAVCTGSGVSLAKNLKSNIFLTGDIKYHDAFILSEENINLIDIKHYNSEECFAKSLALLLQKLPKEIIIKVSKNPFSNY
>NZ_CP035946.1|WP_172230984.1|574681_575035_+|diacylglycerol-kinase
MKAKYSFFKNTSYALAGLKRAWQESAFRIEFCIILPLVLFAFFYDFNFYDRLFLISVLILILIVECINTAIECAIDLITKDYALLAKYAKDLASAGVFFSIVLAVFVWVMILSKEFL
>NZ_CP035946.1|WP_172231017.1|585000_585444_+|50S-ribosomal-protein-L9
MKVLLIKDVKGLGKAGEVKEVKDGYGQNFLIGKGFAKLASTEVLRKHASDLKKKEEQNRYELELMNKLKESLSDKTVIVKKQIGANGHLFGGVTKDEISNALKEQFHLEVDKKCIQELNAKELGIFNVTAKLGHGINAEFKIEIKAL
>NZ_CP035946.1|WP_172231020.1|585443_585980_+|ATP-dependent-protease-subunit-HslV
MFCATTILAYKGKDASVIGGDGQVTFGNAVLKSNAVKLRKLYDGKILAGFAGSTADAFTLFDMFEKMLENKKGDLERAVIDFSKEWRKDKYLRKLEAMMIVLNRKHIFLLSGTGDVVVPQDECICAIGSGGMYALSAARALHAHANLDELSLVKESLKIAGEICIYTNTNITTYELRD
>NZ_CP035946.1|WP_172231023.1|585981_587301_+|HslU--HslV-peptidase-ATPase-subunit
MQMLPKDIVSFLDEYIIGQNKAKKQIAIALRNRYRRLQLDSAMQDDIMPKNILMIGSTGVGKTEIARRIAKLMGLPFVKVEASKYTEVGFVGRDVESMVRDLANAALTLVKNEHLEKNKARLQDVVESKILEKLLPPLPKGVSEEKQVEFESSLEKMKERLRAGEFDEKMIEIQVTQRSFEQNANLPPELAGMQEMVKVIGIADKKVKKEVKIKDAKKILENELMDSILDNESIKDEAARRMQDEGIIFIDEIDKVAVSSSNSNRQDPSKEGVQRDLLPIVEGSVVNTKLGNVKTDHILFIAAGAFHLSKPSDLIPELQGRFPIRVELDSLGADELKLILTTPKNSLLKQYTALLSTEGVKLEFSDEAVNKIAQIAALANEKMEDIGARRLHTVIEKLLEDISFECEKYENKECLVDEALVEEKLGKIVENNDIARYIL
>NZ_CP035946.1|WP_172234365.1|587300_588161_+|GTPase-Era
MKSGFVSVIGRTNSGKSSLINALLGEELCFISRKENATRRKMNVIIMHGDNQVILVDTPGLHESNKTFNQLLIEAAKKSINECDLILFVMSVKDDFSEYEKFLSLNPKVEHIVVLNKIDLVKDEYLLKKLAEFNFNAKIIPFTNKNNFYKKILLDEICKYLPVHPHFFDAEHTTDKTLKEVAAELILESIYDNLSDEVPYFCEVVVQKVIEKDNETTFFADIITDTNSHKAMLIGKEANTIKRIGIKARKRLQDLLGIKINVKLLVKQKKHWYNDEIFLKQIKLSN
>NZ_CP035946.1|WP_172231026.1|588177_589857_+|hypothetical-protein
MSRKNNKRDIIAYDINSNKLYRLANNILNEITIKDKTKTAYNISYMPGLEVKYSSVDVSNESDEDEINVITNKIYESLGLDIDKDYNITYGISNASMGVNTIYNVFVVDNEKIAETFDEVAKKINYIDYLDMEPLLYKTYYSNQILDSMGLQMFIYLHKTYATLTFYKDGELIYYRVLNKLSIDMLHAAYCNDLSERISERIFIDDLNRYGFDHIEEAKKISLNKVLADAFKLLVSNISFGIKTLSLADMGISRVIVGTDIGLSDNFLRKIETMFSCFRSIDPDELIDRLLENNTEINSNTLRVNQFLNIHKFKYDLFKNTKEFIPNIKAQENTLENVEHELNINPFVLMSFLKAQEQLKEPMPTFNISTYLRPLPLLKRRSGQLILTAVLALLLAILYPIFNYSYGYYLSFKSDTLSQQLPSVKETHDKLSQQISGLKSQIDSLNQNINQSKQRYSYIANLLDEIYNKKQHYYARAKMVKDLTGFLNVSNVKITTLEANANTIELGLKGGNIEVANFLNSISSVDKYSIDSKDINIQNIINPDGSSEYVSKVVIRVVK
>NZ_CP035946.1|WP_172231029.1|589853_590576_+|type-4a-pilus-biogenesis-protein-PilO
MNKGVNYLDKIDDYFSLKPNNVFYACAVLLFVAVFYLVYDYTYEDSEVYVNEIVEKTNEMTKTIESLQAFIDDNNSRAAVPNMQKRLQDLRKEEKTINDDTAFFDNKLKEISPLLFNQKNWSKFITKINSQAMKNNLIIGDIQSRLNDAHSRKVEEIFNISFSIKGKFQDILRFINSLEESEDIVDITSIKMYSNKKYLNLENNQNNNQNNNQNNNSNNVEEDDGSIKTELKISIWGIKY
>NZ_CP035946.1|WP_172231032.1|590575_590959_+|stage-V-sporulation-protein-S
MKNIFLMILLTINVLAIDKEAIEQKIKALSDARVILNSSDIDMLNNPFYQVVTNKSQQNTEPVLTFTLSAIVEKRAKINNKWYEVNEEIDGSNGYKVVSIKNDIVGISNSNNYKELNLKDFQNVQIN
>NZ_CP035946.1|WP_172231035.1|590942_592538_+|pilus-(MSHA-type)-biogenesis-protein-MshL
MFKSINKKLFLSICLVGSLAANSYAASCSKRAFDIKVKEETSANEIINQLSNICSFSVVYKDSYAKTALTQKQNGINMKKMHLKDIFDFLIKEQGLTYEFENNILRVVGLETKTFKLDYITSIREGSAITKANVDSSSSSSSSSSSSSSSSSSSSSSDDDNIIKTSEKFDFWKDIGKEIIDIMQNSGKGTPVIAPTINSNAGLITVTSNEATLDKIQAYLNRVEESLKKQVIIDVSIIEVSLDKSHKTGVDWSKFNLGFDTTNSQDAKDAGIINDASNILFGKLITGTGIRNESLADQGVKSSFEGRLSFNLTGMLNFLKQSGDAKVVSSPKIATLNNQQALITVGDTINYKLKSSSTSSSGDSTSQSEEMQSIFVGILLNILPEISDDNKIMLRINPSISSLRNAEDGNSTSNADRTIAPDTKQKKISTVVQVRDGESIVLGGLINEVDGYTKNGIPVLQDIPLLGKLFGSTAKTKNKSELVFVITPHIVDFSKNKEDIKNSLEDLGYTLALDYKDELKPNATKDEILKK
>NZ_CP035946.1|WP_172231038.1|592539_593373_+|ATP-binding-protein
MSNKYTYAKELFIDNLASFNFINLDKSKITYHRIISALSKPLKLILFYGKPGSGKTFILTKVENDLKKQDKKIIFFPQPFYSEKEFFSTLFYEINKEEKEILSYESFLKNYKELLVVSEEEAKKEPFLIMLDEAQLYPQILIEKIRLLADTKLFRFLFTVHKTSVGEEDVLAQEHFTTRIWESIELVESTQSEVITYIEKKLDSLSDKLGNNFFVKKDYDFIYKLTKGNLRTVNLLLYKAFEIYEFYEQEKSSEFANANINEKVLTMSAISQRLINA
>NZ_CP035946.1|WP_172231041.1|593365_594346_+|hypothetical-protein
MLNMYEIIELESKYLEYTKKNKKKKNFLYLSIGFCSILVVLFVLIFINFFFNQSNQQSQVASTNKAIIQDEVTKSIVLKEKEKILQSKISNLNSKKANENLNNSIAKVEEKQQNNIQEIESKKSQSLEENAIFKKDDIVNNLANNLPTFEIKSIGVKNSTIEKNKKDISNNNSSNKQNVLKQIQAPKEVFVNSNMQIVQSEQEDKEEELNPNIIITDSQSKTKLKTNKNSDIKELQSNYNETGSIYFAIELSKQYYLMADYSNARKWSIIANQKDKANEETWILFAKASYKLGQKEQALNALTNYNKDVNSTKVNKLIEQIKGNTL

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Crispr_ID: NZ_CP035946_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP035946_4

721956-722134

Orphan

Consensus_repeat	Method
TTTTCACTACTTTCATTACTTTC	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP035946_4

>merge|NZ_CP035946|4|721956-722134|CRISPRCasFinder
TTTTCGTTATTTTCTTTGTTATCGTTTGCATTATTATCGTCTTGTTTATTATTGTTATCTTTATTGTTTTCTATGTTTTCACTACTTTCATTACTTTCAGTGTTTCCAGTGTTTTCACTATTTCCATTATTTTCACTACTTTCATTACTTTCCGTATTTTCACTGCTTTCAGTGTTTTG

>NZ_CP035946|4|4|721956-722134|CRISPRCasFinder
TTTTCGTTATTTTCTTTGTTATC	GTTTGCATTATTATCGTCTTGTTTATTATTGTTATCTTTATTG
TTTTCTATGTTTTCACTACTTTC	ATTACTTTCAGTGTTTCCAGTG
TTTTCACTATTTCCATTATTTTC	ACTACTTTCATTACTTTCCGTA
TTTTCACTGCTTTCAGTGTTTTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP035946.1\|WP_172231399.1\|731930_733175_-\|glutamyl-tRNA-reductase	unknown	unknown	gnl\|CDD\|234592
NZ_CP035946.1\|WP_172231384.1\|726709_727795_+\|cytochrome-c1	unknown	unknown	gnl\|CDD\|225413
NZ_CP035946.1\|WP_172231345.1\|711588_711891_-\|DUF2325-domain-containing-protein	unknown	unknown	gnl\|CDD\|226813
NZ_CP035946.1\|WP_172231387.1\|727922_729194_+\|sodium/glutamate-symporter	unknown	unknown	gnl\|CDD\|129314
NZ_CP035946.1\|WP_172231365.1\|716348_717542_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP035946.1\|WP_172231342.1\|709371_709851_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP035946.1\|WP_172231393.1\|729731_730109_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP035946.1\|WP_172231390.1\|729292_729703_+\|PepSY-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|371505
NZ_CP035946.1\|WP_172231350.1\|712509_713820_+\|cation:dicarboxylase-symporter-family-transporter	unknown	unknown	gnl\|CDD\|234968
NZ_CP035946.1\|WP_172231359.1\|715037_715640_-\|orotate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234771
NZ_CP035946.1\|WP_172231378.1\|724176_724923_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP035946.1\|WP_172231375.1\|722824_724180_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|163525
NZ_CP035946.1\|WP_172231362.1\|715632_716352_-\|orotidine-5'-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|234695
NZ_CP035946.1\|WP_172231353.1\|713819_714524_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP035946.1\|WP_172231396.1\|730237_731944_-\|proline--tRNA-ligase	unknown	unknown	gnl\|CDD\|236405
NZ_CP035946.1\|WP_172231356.1\|714621_715017_+\|pyridoxamine-5'-phosphate-oxidase-family-protein	unknown	unknown	gnl\|CDD\|227348
NZ_CP035946.1\|WP_172231381.1\|725489_726713_+\|cytochrome-bc-complex-cytochrome-b-subunit	unknown	unknown	gnl\|CDD\|224209
NZ_CP035946.1\|WP_172231347.1\|712059_712383_-\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238089
NZ_CP035946.1\|WP_172231369.1\|717760_719347_-\|DASS-family-sodium-coupled-anion-symporter	unknown	unknown	gnl\|CDD\|279307
NZ_CP035946.1\|WP_172234369.1\|725016_725487_+\|Rieske-2Fe-2S-domain-containing-protein	unknown	unknown	gnl\|CDD\|273610

Protein	Function_ID	Function_description	E-value
NZ_CP035946.1\|WP_172231399.1\|731930_733175_-\|glutamyl-tRNA-reductase	gnl\|CDD\|234592	PRK00045, hemA, glutamyl-tRNA reductase; Reviewed.	4.25395e-131
NZ_CP035946.1\|WP_172231384.1\|726709_727795_+\|cytochrome-c1	gnl\|CDD\|225413	COG2857, CYT1, Cytochrome c1 [Energy production and conversion].	3.88564e-26
NZ_CP035946.1\|WP_172231345.1\|711588_711891_-\|DUF2325-domain-containing-protein	gnl\|CDD\|226813	COG4378, COG4378, Uncharacterized protein conserved in bacteria [Function unknown].	2.41669e-41
NZ_CP035946.1\|WP_172231387.1\|727922_729194_+\|sodium/glutamate-symporter	gnl\|CDD\|129314	TIGR00210, Sodium/glutamate_symport_carrier_protein, sodium--glutamate symport carrier (gltS). [Transport and binding proteins, Amino acids, peptides and amines].	2.35513e-147
NZ_CP035946.1\|WP_172231365.1\|716348_717542_-\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	9.15771e-68
NZ_CP035946.1\|WP_172231342.1\|709371_709851_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	6.81673e-11
NZ_CP035946.1\|WP_172231390.1\|729292_729703_+\|PepSY-like-domain-containing-protein	gnl\|CDD\|371505	pfam11396, PepSY_like, Putative beta-lactamase-inhibitor-like, PepSY-like. This family of bacterial proteins is probably periplasmic. Members are found predominantly in microbes of the human gut and oral cavity. Structurally, one member of this family is found to show similarity to the beta-lactamase-inhibitor PepSY proteins, so the overall function may be inhibitory. There are tandem repeats of the domain on many family members.	2.87319e-16
NZ_CP035946.1\|WP_172231350.1\|712509_713820_+\|cation:dicarboxylase-symporter-family-transporter	gnl\|CDD\|234968	PRK01663, PRK01663, C4-dicarboxylate transporter DctA; Reviewed.	5.50414e-157
NZ_CP035946.1\|WP_172231359.1\|715037_715640_-\|orotate-phosphoribosyltransferase	gnl\|CDD\|234771	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated.	3.2365e-52
NZ_CP035946.1\|WP_172231375.1\|722824_724180_+\|amino-acid-permease	gnl\|CDD\|163525	TIGR03813, put_Glu_GABA_T, putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.	3.65103e-58
NZ_CP035946.1\|WP_172231362.1\|715632_716352_-\|orotidine-5'-phosphate-decarboxylase	gnl\|CDD\|234695	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase.	2.77353e-66
NZ_CP035946.1\|WP_172231381.1\|725489_726713_+\|cytochrome-bc-complex-cytochrome-b-subunit	gnl\|CDD\|224209	COG1290, QcrB, Cytochrome b subunit of the bc complex [Energy production and conversion].	4.18361e-115
NZ_CP035946.1\|WP_172231356.1\|714621_715017_+\|pyridoxamine-5'-phosphate-oxidase-family-protein	gnl\|CDD\|227348	COG5015, COG5015, Uncharacterized conserved protein [Function unknown].	1.03593e-21
NZ_CP035946.1\|WP_172231396.1\|730237_731944_-\|proline--tRNA-ligase	gnl\|CDD\|236405	PRK09194, PRK09194, prolyl-tRNA synthetase; Provisional.	0
NZ_CP035946.1\|WP_172231347.1\|712059_712383_-\|rhodanese-like-domain-containing-protein	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	2.3188e-15
NZ_CP035946.1\|WP_172231369.1\|717760_719347_-\|DASS-family-sodium-coupled-anion-symporter	gnl\|CDD\|279307	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region. There are also some members in this family that do not match the Prosite motif, and belong to the subfamily SODIT1.	1.75537e-114
NZ_CP035946.1\|WP_172234369.1\|725016_725487_+\|Rieske-2Fe-2S-domain-containing-protein	gnl\|CDD\|273610	TIGR01416, Rieske_proteo, ubiquinol-cytochrome c reductase, iron-sulfur subunit. This model represents the Proteobacterial and mitochondrial type of the Rieske [2Fe-2S] iron-sulfur as found in ubiquinol-cytochrome c reductase. The model excludes the Rieske iron-sulfur protein as found in the cytochrome b6-f complex of the Cyanobacteria and chloroplasts. Most members of this family have a recognizable twin-arginine translocation (tat) signal sequence (DeltaPh-dependent translocation in chloroplast) for transport across the membrane with the 2Fe-2S group already bound. These signal sequences include a motif resembling RRxFLK before the transmembrane helix. [Energy metabolism, Electron transport].	1.2902e-50

>NZ_CP035946.1|WP_172231369.1|717760_719347_-|DASS-family-sodium-coupled-anion-symporter
MQKDKIPLAALCILISLAFCFLPLPQGLIDLKLQLLQKAHPNYELTQLQSLALEDARLAFIYLGAFIATILCIILKVMPLGAVSLIAIAFVAFTTISVGADVAAASRSKIAINQALSAFSNSLIWLIVISVLLARGIIKTGLGKRLAFYFLSIFGKNTLGIGYSIALSEVILAPITPSNTARGGAIINPIVQSISKALGSDPANNTQNKVGTYLNLVNYQSNPISSAMFITATAPNPLVVDLIAKATNMQISITWGQWALGMFIPCICAMLLMPLVIYFISKPELTKTPDATKIAKEELQKMGAFSKDEKIMLSIFIGCLFLWAGGMSLILKLAHLLGFLTTVSVLKVDPATVAALGLATALLTGVLKYQELLEQKSAWDTLIWFSALIMLATMLDKVGITSYLGILLKDIASNFSTTTVMIFFMLAFLYSHYFFASTTAHISAMFFVFYSTGLALGAPPMLYAFMLAAAGNIMMALTHYATGTAPVIFGNGYVSMNRWWAVGFVVSVVDIVVICLVGLVWWKILGFY
>NZ_CP035946.1|WP_172231365.1|716348_717542_-|MFS-transporter
MFFNYTKRQKKILLSSALGMCLEMMDIMFIAYALSSIINEFSLSGKEAGFISSATNIAMLVGGLFFGFLADRYGKIKIFSYSIILFAIGTAFIYYANTYFWLVFFRVLAGLGAGGEYGVGMGLLACEFKKENMGKLSSIIAIFGQVGVALAAILAALLLDYGWRYLFLIGIIPVLLAVWIRFSLKEESNEQIMKINYKSAFKGKILLSICLCIMSSIQIAGYFGLMNWLPTIAKKTLDLSNANASYWMISTILGMSIGMWVFGKFFDKFGARISFSIFLIGSSVCVFLFTLIQNYNQLILIGFIIGFFSNGMFAGYGALVNILYDKSVSASANNIIVNVGRAIGGMSPFVIGAILDKYNSVYFVMCFLSSLYIISFLVMINLSQLKSKNYNKFKAEI
>NZ_CP035946.1|WP_172231362.1|715632_716352_-|orotidine-5'-phosphate-decarboxylase
MKTIVALDFKSVDEVKNFLIKFQNEKLQNYAKENNLEYEKPYFKVGMWLYYTAGDEILKYLQEYKIFLDLKLIDIPNTIYNASLSLMQKNIDILSIHSFAGLNSLKAARKAKEELNSKCELFGISILTSLNEDDLKNDLMLKTNMQESVKQRINILNKANFDGVVCSAYEAHLLKDTKLKALCPGIRFKNQESNDQERVASPKFAKENNIDYIVAGRMITNSKDPIRAYFNCIKGEEYE
>NZ_CP035946.1|WP_172231359.1|715037_715640_-|orotate-phosphoribosyltransferase
MSDVRNEVVKVLKDCGAIFINTKEFFTYSSGIKSPIYCDNRVLISYPTQRTFIANELAKLIMQKAPDCEIIAATATGAIAHGAWVAQILNKPLVYILSKNKTHGRAKMIEGVFELGQKCVIIEDLISSGQSSINALLAARAHGLNVDKIFSIFSYELNQAKENFAKNNCECFSLSGFSAFSSMLNEDELKILNEWRNAQK
>NZ_CP035946.1|WP_172231356.1|714621_715017_+|pyridoxamine-5'-phosphate-oxidase-family-protein
MKDIISIYEFLKNNHIQILSTSIDNTPISRPIASALLYEEKIFYCMNKDKKMYEQLKINSKISICVCASDFSWIRINADAIFSDDLRVKQEYINQGRTRFKNANDDNFAVFYLKNIKAQIHKKAEVVNINS
>NZ_CP035946.1|WP_172231353.1|713819_714524_+|hypothetical-protein
MKRLFLLFSAMFLYANSPANEALELAKVDDFLKSLNKCSNYDYKACSNLENYTFNLESKIINSYMQTLCDSKNKAACYFISASKADAKSDLFSLCKDNFHLACTSVVIRYSKDINDALSVLNAQCLSDKNYHSCYESAKIYSSILDSENTIKYSSKSCVKNSFAACRLQAQALEQANKDKDSLRLYDKTCSKKDFYSCIKLFNFYKAQNNTKYMVKYLKEACNIKDFQACSLLK
>NZ_CP035946.1|WP_172231350.1|712509_713820_+|cation:dicarboxylase-symporter-family-transporter
MKTSIYKSLVFWVIIGLILGVIVGACNPIKIGAIDNLAIWSKVFIDIFIKALKLLIGPIIFVMIILGILGLGDIKKVGSIGLKAVIYFEVVSTLALAIGIFMARVLQPGAGLNLDPTSLDAKSVEKYVSAASSDSASFLGVLKSAIPSDILSPFTEGKTLQVLFIALITAFIVVTLKEDDRNYIKRALEVLQAFVFKILTIVMYFSPLATFGAMAFLVQKYGISSLQNMVYLLVVMLISCLVFIFGILGLICFFAKINIFKFMRFIAKELLIVFTTSSSESALLPLMKKLEKAGVDKACVGLVLPTGYSFNLDCTNIYLALCVIFLAQAFNIDLSLWQEITILLILMVTSKGAVGVTGSGFIVLAGTLSSLGNDLIPVATVSILLGVDKFMSEMRACGNLCGNSVACVIVAVWNKQIDMDKFRYALDHPNEYRIQD
>NZ_CP035946.1|WP_172231347.1|712059_712383_-|rhodanese-like-domain-containing-protein
MSYNVSIKDYNENNFTLVDIRTQAEINEFYVKNSKLLALDFSNLDLAYIKDKLLSFKEDNKEILLMCRSGGRSEYLTQILLSDGVNVKNLEGGILAFLQEKPALICK
>NZ_CP035946.1|WP_172231345.1|711588_711891_-|DUF2325-domain-containing-protein
MSVLVIGADEITPIKAVLHNLGAKSITHWDARNENRVNRQSIPQDTNCVVMLTSFLNHNTMKKIKSQAKKRNIPLVCAKRSVSCVYCEYCKVLGISCENK
>NZ_CP035946.1|WP_172231342.1|709371_709851_+|GNAT-family-N-acetyltransferase
MIKIKEANVNDVSIILDFIKDLAEYENMSHLVSANEDLLRKNIFENKYAKVLLAYYDNKIAAMALYFYNFSTFLAKGGIYLEDLFVKKEFRNKKIASHLFRRLAQIAVENDLARIDFVCLKDNDLALNYYDRIGAKIQDEWHLLRLNSDDILKLSKKEF
>NZ_CP035946.1|WP_172231375.1|722824_724180_+|amino-acid-permease
MRLVDIIIMNLIGIFSLRQIPYVASYGAASIILWFIAAFCFFIPLALVCGELGSKYSKSGGIFLWINKAFGVKIAYFCLICYLLSCLAYFPTLLYFAANSLVYVLHIKEKSLFIGCFSIFSFCLLTYINFKGIAFTQFINKIFVFLGIVVAFSVLIAVCFVYYFKGFSMQSDYSKGYLPSFDLDTISFASSMMFAFAGLELSGMIISKIKNPQKTYPKAILISAFLIVAIYICGTFCVNYIFPAKQTNILDGILQALDFAGDLIGVNYLPQIMAICLFFGTLGQINSWLIAPIYMLATASKEGIINIYEAKLHPKYNTPYRALFTQAVIVSILCLSCFFVSNIQNIYWTLSAFTTVCYFLPYIAMFLAYLKLKKEQKDNNDEGFELKNKFISIFVALIGFSSVVFALVLSFIAPEGTNKLIHFLQILSAPIIAILIVSFTFKQNCKNKESR
>NZ_CP035946.1|WP_172231378.1|724176_724923_+|hypothetical-protein
MKNFLKGLSLGILLLVFFLFGLVSTKAIEYFTKDNSSSIESEIEVLKEIEFDLFSAKIKISESAFLSKDKDYNDKEKIEDIFSNISALLKESKICYGGSYELNPNYSYKDGLRSKEGYKINSIISCTFAKNDLEKYRNLLNNLDELANKDNLIVINSPLLEPNLSAAKIKESEEILNQMLKEKLDEKLVFYSEFSKKTCKFAKISIFSDLNINNTPVMLLKASADVNAQPALKSMSKKMQAQFVLKCI
>NZ_CP035946.1|WP_172234369.1|725016_725487_+|Rieske-2Fe-2S-domain-containing-protein
MGFALGATAAVGGVFTLVGMKKTWDPLPSVKAAGFTTVDLSVLSEGELRTVEWRKKPIFILKKTEQMGQSPTDIVADGSRYTVVIGLCTHLGCIPAFHKDEQKFVCACHGGQFDINGKNISGPPPRPLEIPPFAVDGTKLVLGEEGPEYKKMIEKA
>NZ_CP035946.1|WP_172231381.1|725489_726713_+|cytochrome-bc-complex-cytochrome-b-subunit
MAEFKKADGIVDWLDQRLAVKSFMKVMMTQYWIPKKINFLWAMGVILLTMFAILFITGLLLVMYYKPDVALAFDSVNKTIMQEVEYGWLWRHMHGVAASVVFLVMYIHMFTGIYYGSYKRGREMIWISGMLLFVLFSAEAFSGYMLPWGQMSYWAAMVITNLFGGIPFIGPELVEWIRGDYAVGDATLNRFFMLHVCLLPIVVIAVIAFHFYSLRFPHVNNEISEELDFDLEAEKYLAGQKKESKVIAFWPDFLCKDIFYICLFMIFYFYLVCFHYDFAMDPINFDPANALKTPPHIYPEWYFLWSYEILRGFSYEIGLACFGIAQVIFFVLPFLDRSDVVAPAHKRGAFMVWFWVLLLDMIILTIYGKLPPVGINNNIATIASVLFLLLLIVILPVITIMERKAKK
>NZ_CP035946.1|WP_172231384.1|726709_727795_+|cytochrome-c1
MREFKIFLVLVIFTGIVYWGVEPYAHSQMNEHTSAVNFDFKAEDINQAKVELEKAMNSDKTGAEKEKDIEFAKMQLKDYEQLWANVDKIASLKADVSNGKEAFELNCASCHRASFDGFNDADDSISAYGIIYPDLSTAGAIYDDKFLMAISLNPALAMKNHKKYNEQNPHPMLTAFLEEDGSISEENAQSVADIVAYLKSIGNKALLSEQEKLAKEINASKMSDEDKQKAIELSKHRLVFEHACARCHDVKYDKLFAKINANDLAAYMGSIPPDLSMVIRAKGEEYLNKFLNDTQKQLAGTAMPRVGLNAHSQEEVISYLSAVGDSKKAERESLGIKIMIYFAVMAVLAFLWKKAIWKDLH
>NZ_CP035946.1|WP_172231387.1|727922_729194_+|sodium/glutamate-symporter
MKENVYELSILTARITSDYSRIELNFYGTFLCMLIVLLVGRVVTRKVNFLNHYDIPEPVTGGIIFAFIFFILNFFYGIIFSFTNAIKDPLLLIFYSTIGLSADFNSIKKGGKLLYLFAISVFGLLFVQNAVGVGIMKMLGENPLIGLLGGSITLSGGHGTGAAWGDTFAKPPYFFEQATDIAIACATYGLIAGGVIGGPMAHYLIKKFNLKANDENENEVKNETFESPQKVRLITSDSFITSLILISISLAVGVSIEAITHNTPIAMPTFVWCLFTGIFIRNTFGKKGVYTVFDREIGVIGNVALSLFLSMAIMSLNIVDLVKLAVPITILLVIQTIVIIIYVRYVTFVLCGKNYDSACLVAGHCGFGMGATPTAIANLQVVTNHFGMSHIAFILVPIMGGFLVDIANAFTIKSFLSLFFLFF
>NZ_CP035946.1|WP_172231390.1|729292_729703_+|PepSY-like-domain-containing-protein
MKKFMLGCVLAASLFADTVISPDALPQAAKDFVKTHFSNATIAYAEKDWTSFDVKLSTGAKLEFTSSGKIKEIDTKYSEFPDSILPDILAKAKASQANAKLRKLEKNINGYELKFTNGMEVYINEKGDVIATKFDD
>NZ_CP035946.1|WP_172231393.1|729731_730109_-|hypothetical-protein
MKIYTKEDINNVLVFFISNIKRYFRNDGFEFCLAFIKTKNISCAASIKNALRNTDLVFATKNGIVILLSGTPYEHAYALINDFSKFVDGDNKICIVNFPLDSDNAQDLLEHLEAKFSVNHKEELF
>NZ_CP035946.1|WP_172231396.1|730237_731944_-|proline--tRNA-ligase
MKFTKFYAPTSKNAPKDAQLTSHILLSRAGYIEQLGSGLYNYLPLANTMIEKIKNIVIKRMQEIDANYLNLSFVCPLSYWDESGRSFVFGKELLRFKDRKDNDFILSPTAEEAIVALVRGKITSYKQLPINLFQIQSKFRDEARPRFGLLRGREFIMKDAYSFHSSYESLDEEFLKVQNAYCKILDDLKLNYAIVDADSGAIGGSGSKEFMVIAPSGEDDLAICKCGYCANVEAAKRQKINYENKIEANLSKFKTPNIKSIDDLANFFKCEKHNLIKAVVKKAIYKDKEELIVYFIRGNDELNEVKAKNAANAIEIVDANDEDLLNNSLCAGFIGPFNLDIKFFIDEELKNEDNLICGANEVDYHLVGVKITNFLDERFKDLSLVKQGDKCPNCSSELDFVKGIEVGHIFKLGDKYSKAMNATYLDENGKAQAFIMGCYGVGISRLLAVLAECKNDEFGLCWDKSLSPFDTYIILSDVKNEEQMNIANEIYAYLKKNNINVLFDDRNERFGVKINDYELIGIPSAIIIGKKIQENLIELKDRKSKESLQISLENKEECFKKIKEFIEK
>NZ_CP035946.1|WP_172231399.1|731930_733175_-|glutamyl-tRNA-reductase
MNFFSISYTHKNTSIDIREKLAFNSDIRTSECLKLILANNKINECVILSTCNRIEIMCYVNDFIGINDYIIKCLCLICKIDESLIKNLPDIYEDSGFLHHLFSVASSLDSLVIGETQIVGQLKNALLLAKNYQNDISNLENVINYAFKCAALVRNQTQISKNPVSVSSVAVNKAKECIDIKNEKILLIGSGQMINLAAKHLLNHSNNLFICSRTLQNAKNLAQELKVNYLDYKDLKNFLNDFKIIFSATSSNEAIINDEMIIQKDYKRFYFDIAIPRDINISTYHNIEVFSVDDLNEIVKKNMSFKDEQAKIAYSIIANMVYEFYNTQSKTKITPIIKSMRLKANVCIENELKKAIKKGYIKNSNEEEVYKFAKQVMNAYLHELTIKIKNYDEHLYDIESINYLFLERQNDEIH

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Crispr_ID: NZ_CP035946_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP035946_5

1319953-1320271

TypeIII

Consensus_repeat	Method
GTTTCAATCCCCTAAAGCGGGGCAATCTTCTTAAAC	CRISPRCasFinder
GTTTCAATCCCCTAAAGCGGGGCAATCTTCTTAAAC	CRT
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC	PILER-CR

4 spacers

cas1,cas2,csx20,csm3gr7,csx19

The CRISPR arrays of NZ_CP035946_5

>merge|NZ_CP035946|5|1319953-1320271|CRISPRCasFinder,CRT,PILER-CR
ACCTTAATCCCCTAAAGCGGGGCAATCTTCTTAAACAAGGGGAGTGGATAATAAAGGACACACGCCGTGCGGTTTCAATCCCCTAAAGCGGGGCAATCTTCTTAAACAGCAATACCATGAAGAATTTAAGCCTGATTACAAGTTTCAATCCCCTAAAGCGGGGCAATCTTCTTAAACAATGAGGTTAGTTTTAATATGAAAGCCTTATGGGTTTCAATCCCCTAAAGCGGGGCAATCTTCTTAAACTTCATCGCCACACAATACGCCGTTGAGGCAGGTAAAAGTTTCAATCCCCTAAAGCGGGGCAATCTTCTTAAAC

>NZ_CP035946|5|5|1319953-1320271|CRISPRCasFinder
ACCTTAATCCCCTAAAGCGGGGCAATCTTCTTAAAC	AAGGGGAGTGGATAATAAAGGACACACGCCGTGCG
GTTTCAATCCCCTAAAGCGGGGCAATCTTCTTAAAC	AGCAATACCATGAAGAATTTAAGCCTGATTACAA
GTTTCAATCCCCTAAAGCGGGGCAATCTTCTTAAAC	AATGAGGTTAGTTTTAATATGAAAGCCTTATGG
GTTTCAATCCCCTAAAGCGGGGCAATCTTCTTAAAC	TTCATCGCCACACAATACGCCGTTGAGGCAGGTAAAA
GTTTCAATCCCCTAAAGCGGGGCAATCTTCTTAAAC

>NZ_CP035946|5|3|1319953-1320271|CRT
ACCTTAATCCCCTAAAGCGGGGCAATCTTCTTAAAC	AAGGGGAGTGGATAATAAAGGACACACGCCGTGCG
GTTTCAATCCCCTAAAGCGGGGCAATCTTCTTAAAC	AGCAATACCATGAAGAATTTAAGCCTGATTACAA
GTTTCAATCCCCTAAAGCGGGGCAATCTTCTTAAAC	AATGAGGTTAGTTTTAATATGAAAGCCTTATGG
GTTTCAATCCCCTAAAGCGGGGCAATCTTCTTAAAC	TTCATCGCCACACAATACGCCGTTGAGGCAGGTAAAA
GTTTCAATCCCCTAAAGCGGGGCAATCTTCTTAAAC

>NZ_CP035946|5|3|1320024-1320271|PILER-CR
GTTTCAATCCCCTAAAGCGGGGCAATCTTCTTAAAC	AGCAATACCATGAAGAATTTAAGCCTGATTACAA
GTTTCAATCCCCTAAAGCGGGGCAATCTTCTTAAAC	AATGAGGTTAGTTTTAATATGAAAGCCTTATGG
GTTTCAATCCCCTAAAGCGGGGCAATCTTCTTAAAC	TTCATCGCCACACAATACGCCGTTGAGGCAGGTAAAA
GTTTCAATCCCCTAAAGCGGGGCAATCTTCTTAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP035946.1\|WP_172232939.1\|1316415_1318479_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|273041
NZ_CP035946.1\|WP_172232966.1\|1328482_1328920_-\|hypothetical-protein	csx19	cls001376_csx19_CAS-III-D	gnl\|CDD\|274900
NZ_CP035946.1\|WP_172232942.1\|1318565_1318934_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP035946.1\|WP_172232973.1\|1330229_1331651_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP035946.1\|WP_172232933.1\|1311376_1312729_+\|transcription-termination-factor-Rho	unknown	unknown	gnl\|CDD\|236490
NZ_CP035946.1\|WP_172232945.1\|1318887_1319310_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP035946.1\|WP_172232951.1\|1321699_1321963_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP035946.1\|WP_172232963.1\|1326374_1328483_-\|TIGR03986-family-CRISPR-associated-RAMP-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274902
NZ_CP035946.1\|WP_172232924.1\|1306364_1306925_-\|SIS-domain-containing-protein	unknown	unknown	gnl\|CDD\|184408
NZ_CP035946.1\|WP_172232957.1\|1323501_1324968_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP035946.1\|WP_172232969.1\|1328916_1330233_-\|hypothetical-protein	csm3gr7	cd09726_csm3gr7_CAS-III-D	gnl\|CDD\|377130
NZ_CP035946.1\|WP_172232927.1\|1306918_1308298_-\|bifunctional-heptose-7-phosphate-kinase/heptose-1-phosphate-adenyltransferase	unknown	unknown	gnl\|CDD\|225425
NZ_CP035946.1\|WP_172232954.1\|1323133_1323505_-\|hypothetical-protein	csx20	xls002255_csx20_CAS-I:CAS-III	gnl\|CDD\|238570
NZ_CP035946.1\|WP_172232948.1\|1320697_1321699_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187766
NZ_CP035946.1\|WP_172232936.1\|1315127_1316426_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|197231
NZ_CP035946.1\|WP_172232960.1\|1325043_1326375_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378186
NZ_CP035946.1\|WP_172232930.1\|1308979_1311301_-\|heavy-metal-translocating-P-type-ATPase-metal-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|225127
NZ_CP035946.1\|WP_172234413.1\|1312725_1314450_+\|DNA-polymerase-III-subunit-gamma/tau	unknown	unknown	gnl\|CDD\|236267
NZ_CP035946.1\|WP_172232976.1\|1331647_1332229_-\|hypothetical-protein	csm3gr7	mkCas0198_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|377130
NZ_CP035946.1\|WP_172234411.1\|1308290_1308962_-\|cbb3-type-cytochrome-oxidase-assembly-protein-CcoS	unknown	unknown	gnl\|CDD\|319806

Protein	Function_ID	Function_description	E-value
NZ_CP035946.1\|WP_172232939.1\|1316415_1318479_-\|AAA-family-ATPase	gnl\|CDD\|273041	TIGR00376, DNA-binding_protein_SMUBP-2, DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases. [DNA metabolism, DNA replication, recombination, and repair].	6.29494e-60
NZ_CP035946.1\|WP_172232966.1\|1328482_1328920_-\|hypothetical-protein	gnl\|CDD\|274900	TIGR03984, hypothetical_protein_FrEUN1fDRAFT_5778, CRISPR-associated protein, TIGR03984 family. Members of this protein family are found exclusively in CRISPR-containing organisms, in operon contexts with RAMP (repeat-associated mystery protein) proteins also linked to CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats).	4.46286e-08
NZ_CP035946.1\|WP_172232933.1\|1311376_1312729_+\|transcription-termination-factor-Rho	gnl\|CDD\|236490	PRK09376, rho, transcription termination factor Rho; Provisional.	0
NZ_CP035946.1\|WP_172232976.1\|1331647_1332229_-\|hypothetical-protein	gnl\|CDD\|377130	pfam03787, RAMPs, RAMP superfamily. The molecular function of these proteins is not yet known. However, they have been identified and called the RAMP (Repair Associated Mysterious Proteins) superfamily. The members of this family have no known function they are around 300 amino acids in length and have several conserved motifs.	1.80379e-09
NZ_CP035946.1\|WP_172232951.1\|1321699_1321963_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	4.22331e-16
NZ_CP035946.1\|WP_172232963.1\|1326374_1328483_-\|TIGR03986-family-CRISPR-associated-RAMP-protein	gnl\|CDD\|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	4.0516e-72
NZ_CP035946.1\|WP_172232924.1\|1306364_1306925_-\|SIS-domain-containing-protein	gnl\|CDD\|184408	PRK13937, PRK13937, phosphoheptose isomerase; Provisional.	2.94992e-85
NZ_CP035946.1\|WP_172232969.1\|1328916_1330233_-\|hypothetical-protein	gnl\|CDD\|377130	pfam03787, RAMPs, RAMP superfamily. The molecular function of these proteins is not yet known. However, they have been identified and called the RAMP (Repair Associated Mysterious Proteins) superfamily. The members of this family have no known function they are around 300 amino acids in length and have several conserved motifs.	1.32005e-08
NZ_CP035946.1\|WP_172232927.1\|1306918_1308298_-\|bifunctional-heptose-7-phosphate-kinase/heptose-1-phosphate-adenyltransferase	gnl\|CDD\|225425	COG2870, RfaE, ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase [Cell envelope biogenesis, outer membrane].	2.83633e-165
NZ_CP035946.1\|WP_172232954.1\|1323133_1323505_-\|hypothetical-protein	gnl\|CDD\|238570	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.	0.000388429
NZ_CP035946.1\|WP_172232948.1\|1320697_1321699_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187766	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	3.25549e-58
NZ_CP035946.1\|WP_172232936.1\|1315127_1316426_-\|hypothetical-protein	gnl\|CDD\|197231	cd09133, PLDc_unchar5, Putative catalytic domain of uncharacterized hypothetical proteins with one or two copies of the HKD motif. Putative catalytic domain of uncharacterized hypothetical proteins with similarity to phospholipase D (PLD, EC 3.1.4.4). PLD enzymes hydrolyze phospholipid phosphodiester bonds to yield phosphatidic acid and a free polar head group. They can also catalyze transphosphatidylation of phospholipids to acceptor alcohols. Members of this subfamily contain one or two copies of the HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the PLD superfamily.	7.97284e-26
NZ_CP035946.1\|WP_172232960.1\|1325043_1326375_-\|hypothetical-protein	gnl\|CDD\|378186	pfam09455, Cas_DxTHG, CRISPR-associated (Cas) DxTHG family. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. The family describes Cas proteins of about 400 residues that include the motif [VIL]-D-x-[ST]-H-[GS]. The CRISPR and associated proteins are thought to be involved in the evolution of host resistance. The exact molecular function of this family is currently unknown.	7.17979e-05
NZ_CP035946.1\|WP_172232930.1\|1308979_1311301_-\|heavy-metal-translocating-P-type-ATPase-metal-binding-domain-containing-protein	gnl\|CDD\|225127	COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and metabolism].	0
NZ_CP035946.1\|WP_172234413.1\|1312725_1314450_+\|DNA-polymerase-III-subunit-gamma/tau	gnl\|CDD\|236267	PRK08451, PRK08451, DNA polymerase III subunits gamma and tau; Validated.	0
NZ_CP035946.1\|WP_172234411.1\|1308290_1308962_-\|cbb3-type-cytochrome-oxidase-assembly-protein-CcoS	gnl\|CDD\|319806	cd07503, HAD_HisB-N, histidinol phosphate phosphatase and related phosphatases. This family includes the N-terminal domain of the Escherichia coli bifunctional enzyme histidinol-phosphate phosphatase/imidazole-glycerol-phosphate dehydratase, HisB. The N-terminal histidinol-phosphate phosphatase domain catalyzes the dephosphorylation of histidinol phosphate, the eight step of L-histidine biosynthesis. This family also includes Escherichia coli GmhB phosphatase which is highly specific for D-glycero-D-manno-heptose-1,7-bisphosphate, it removes the C(7)phosphate and not the C(1)phosphate, and this is the third essential step of lipopolysaccharide heptose biosynthesis. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	3.20277e-62

>NZ_CP035946.1|WP_172232945.1|1318887_1319310_-|hypothetical-protein
MDDNFFTYKIVDKQDNILMLEKNKKRFKAYILNKDENNTYISELAPKLCNIQYDNLMKCEFIEDKNKYYFITKDYETSTDIRSYFSCFLPISSYIKENLFKILDLFIELEKLGLNGCLPDKIIDSNGKLLLDYLCSFFFW
>NZ_CP035946.1|WP_172232942.1|1318565_1318934_-|hypothetical-protein
MASFCWIIYVHFFFGDKDCKSNIEVFKTIYKRYFPAFKNDNLDNFDDLISIKEHLLNSLVKNISKYEINLFPSAIKNYKEFIDTENIKNEFELRLELNKYINANNAYFLLENNKNNEKTIYI
>NZ_CP035946.1|WP_172232939.1|1316415_1318479_-|AAA-family-ATPase
MLDKIYKNGLFKDNIEFLLEVNNKNNNFDCKSIDELLKEIKQHSSSDDNAILYSEKSIKMEEDLLKAENDYIQSKKLSQIGTISNTKNNQLCFVIENANRHFKQNHKVIIKKLNYTQDDDELKGVVDKFVSTKSLLYVNIEDEYSKINLKQYDKNEILIKYSINYDYQAEEIVFKKKERALDELKKSNVYINNLASKLCEPNLNFTENNLIKIDEFFNKNLDENQQLAVKKALSLQDGSEILLIQGPPGTGKTTTIVEIIKQYLKLHPSYKMLITSQSNQAVDNVLEKICEEEQKILRIGNDESKMSEIARKYTPNKIINTIVSKNIKDLQENEIQEFKKNQDEFKEILQSITSKSVKNTDVEMFFIKNIKIIFGTLIGISSWNNFREIVFDLVIVDEAGRATLSELLVPCIKAKKIIFVGDHKQLAPIIDDDIANNLESYSKKEVITSLFEQLFNSNTKFNNLKHMLTYNYRAHKSICNIYSNVFYEGDLKTKDEINELKQHNIDCYIANLVWLNTGNLKDRADEQKGTGKINRCNAKIIKQELNTLQNYCKNNNLSIGIITPYKDQKYYLDNYLKDIVQKYKQDDIQIDIGTVDSFQGSDRDIIFYDCVRAGGGKKSKIDFIADEKRLNVSLSRAKKLLLIVGDIDFLYKSCTNNGFNPFKEIIEYIYKNKSEYEVRNLGEINEA
>NZ_CP035946.1|WP_172232936.1|1315127_1316426_-|hypothetical-protein
MKLNFNLIQHKFTYFGEDNNYELYDIKYVFYPVYKCIVNCIFKEDEQLTQIEVFILRLIDTTKSKISTIEKITCLDKDVLNTIISELIFKAYLDNNLNLSKKAKDYLNNIKSTKMVEKEFCVIFDAISADIIELSQSDIRLEHKVDKDAIELKRNNTLRPDNNCLNNIYKDDKTLKQVIFENIQNFENNETLKLYSVKDLSKISMFYKKHLCCFYKNSINEKKIVALNIASEDIVADEGISRLFDKLLEKEDFKVKENQATKDNSNRFENYTFTLDIKDGQIIDECSHKKYFKYILENAKNDIYIQSPWIRFQVLNEYLDYIKSALSRKVNIHIKYGIENKSKRDNKAIIDKKAEEVFIELKNNYANFKTYKDNSHEKFIICDNDFIINGSFNWLSYLHNEGNERKENSTITKNKDTINKKIKDFYNKEENK
>NZ_CP035946.1|WP_172234413.1|1312725_1314450_+|DNA-polymerase-III-subunit-gamma/tau
MMQAITLKYRPKSYDDLIGQSTVSKSLKFALDNQQIANAYLFSGLRGSGKTSSARILARCLNCKEKISSSPCMHCENCLAQNPSDVYELDAASNRGIESIQELIENTKFTPMHSRFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPNKIPATILSRVLHFRFKAISSSQITNRMKFILDNEKINYEEEALFIIARSANGSLRDALTLLEQAIIYSQNNVNTINVSTMLGIIDTNIIKNFFADILRANDDGIFKFLELAKEYEVNMILDEMSAYLKQAFFNKDRNFSLLLYERFFAILSKARYMAKISDDDEFNLCVMAFMLKEACYLKEVDEEIVKIQKEENKNTLFDDFVRQIQKRDYKLGLIFTNNTTFVSQNESEFVIKVNPKNEEEKNYFKQLFTVVKDIFASLDNSKKLVITSDYNQNNTQNNNSDDKDLQAKNKIANIQANLSISPKNYEQEEKEQMPEMQSDDFLSDDYELELDNIDELMIPEEALINLDDNVIDIILSAVIRLEIENNTLLVYVNPPYDEVELNILRANLINVIKKSIITLKLQDFKVINIQNEKKK
>NZ_CP035946.1|WP_172232933.1|1311376_1312729_+|transcription-termination-factor-Rho
MEKESNTSVEKSNHTNERNEKSEKRNQKKHIPVDGYKIEELKLLTLDKLIEIANEVEIENPREFRRQELMFEILKAQTKKGGFILFTGILEINQEGYGFLRAMDANLSDSANDAYVSNSQIKKFALRVGDIVTGQVREPKEQEKYYALLKIEAINYMPYTEAKQRALFDNLTPIFPTQKLKLEYDPMKLTGRVLDLFTPIGKGQRGLIVAPPRTGKTELMKELATAIAKNHPEANLIVLLIDERPEEVTDMQRCVKGEVFSSTFDQPALNHVRVAELVIEKAKRLVEMGKDVIILLDSITRLARAYNTATPSSGKVLSGGVDANALHKPKRFFGAARNIENGGSLTIVATALIDTGSRMDDVIFEEFKGTGNSEIILDRNISDRRIYPAINITKSGTRKEELLQGPINLPKIWAIRSAMNSMEDVEALKFLYSKMLKTANNDELLQGLNE
>NZ_CP035946.1|WP_172232930.1|1308979_1311301_-|heavy-metal-translocating-P-type-ATPase-metal-binding-domain-containing-protein
MKCAHCSLEYQENQLIKAGNLYFCCNGCKSVYEIIKSNNLDEFYKNANNLSKVEISNVDESVVFKEKIANNISQITFNIPNIHCSACVWLIEKFLLKNEAIVSININYFSKRAQVEFIDDKTSVQEILNQITKLGYKVLPLSADYNKAYKNHQKSYSKLIVAVVCVMNIMWLSIARYAGYFSSMDADIKDIINFAEFILCTPVLFYTALPMFNSAKNALKLKSLNMDCLVVGGALLAYIYSLCAMFLRLEYLYFDSVAMIICFVYAGKFLENLTKKNAIKNVDFLSDLINAEVNLIKNNEVVKSSVYEIKKGDVLRFFTGDKILFDGLCVGGKAKLNTSAITGEAKLKSVSLNSKIISSSVVYSGSCDVKTECEFKDSYIQKIANILNNTKKSNLQKLTDKISSYFCFAILFLAFICFLFNIENINEAIIRSVSVLIIACPCALALSAPVCNLCAINQALKHCILFKNANDVENLSKIKYAVFDKTGVLTSFNLKLSSYEIYSKKDILEELLSLNNHILALNIKDNLKLTKHIISNENYTQIDGKGVIYIKDNKKYFLGSAKFLKENGVNVKSFDKTEVFFADEKELLAYFVFENKINDGALELINFLKSKNIECIMLSGDKEQECKKTAQSLNITKYKAECLPTDKIDFLTSLNSKEILMIGDGINDALALKQALVSISFKQASDLAKNTSDIIILDDNLNKIKSAIRLAKRTYFTIKTNLLISLFYNLISLPLAFNGYINPLVAALFMSFSSICVILNAQRLNNFLTKEVK
>NZ_CP035946.1|WP_172234411.1|1308290_1308962_-|cbb3-type-cytochrome-oxidase-assembly-protein-CcoS
MIAVSIILAFIALLAFIWGLKNKQFLDKDAFLNLNDSEEALNDAITLENRKKQALKKRALFLDRDGVINVDFSYVYERLEFVDGIFDLCKYFYDKAYLIIVITNQSGIGRGYFTKEQMQEFHLRIQNEFKKHNIEIKEFFVCPHTPDDNCECRKPKPKMILDAIKKYDIDENNCVFVGDKISDVQAAFAANIENIYLFTKDKLEQKNCKIIDDFNKIIKDFNA
>NZ_CP035946.1|WP_172232927.1|1306918_1308298_-|bifunctional-heptose-7-phosphate-kinase/heptose-1-phosphate-adenyltransferase
MLNILVVGDLILDEYLFCDCLRISPEAPVPVINPKYNKLSLGGCANVALNIKKLGANVDVLSVLGNDECANFIKKMLKENEINYEIISDKNKKSSKKTRIFGQNQQIVRIDVESCEVISDDMADCLFKNIEDKNYDAIVFSDYDKGVLSPYLVKKIISFAKNKNILTLADPKKDFLKFKDIDILTPNYKEATEFLGLFDDEDDDNLSKKLILMKEKLNIKYPLITLGKNGIALYNNNTLTRHLALAKEVFDVTGAGDSVISSLAYFLSRKKDINEAIKLANKAAAIVVSKIGSYAVSIDEINEFSEDDIYKKQVKNISEFVQKNKNKKIVFTNGCFDLLHLGHLSYLRKAKQLGDLLVIGLNSDESIKRLKGLARPINDINTRLAMLCALEFIDAVIVFSDDTPLEIIKELKPDILVKGADYKDKEIVGSNFAKQTCLIDFVDGYSSTNIINKIKETQC
>NZ_CP035946.1|WP_172232924.1|1306364_1306925_-|SIS-domain-containing-protein
MLNILKDELNSHINTYAKINEEFLNDIYKAYEIISKALKNNNKLLIFGNGGSAADAQHFAAELSGRYKVERKGLSAIALSTDTSALTAIANDYGYEFVFSRQVQAIAKKGDILFGISTSGSSKNVLEAFKEGEKLACVNIMLSSNKATNDKYFNIKAPSLDTPRIQEVHIFVIHSICHLLDLEFKV
>NZ_CP035946.1|WP_172232948.1|1320697_1321699_+|CRISPR-associated-endonuclease-Cas1
MQENYQQSLQKLQKQKSLKEVLHISKAGLSLSKEQEFFCVKNSKETVSKIHANKLKSIIINVNITLNSEVLFLAKKYKIAVLFVNKELESINIYTSSTSSKTFLAQAKLSDEKRLSLAKSIIIAKCKNQLNYIKRMNKYHKKYDENILKMMKIIIKLKKAKNNQEILAYEGGVALWYYECLCDRFNKYNFKKRYKKGAKDVVNMSLNYLYGILYNKILKLIIDNGLSPYVGLLHANNDKNISFVFDVIEEYRTYVVDFVVFGWFSYNPNVNDKDELSKELKEKLCKRFNARLLDKLSYKNQKISIENIITLQIQALKKAILNDDKYKGFCPRL
>NZ_CP035946.1|WP_172232951.1|1321699_1321963_-|CRISPR-associated-endonuclease-Cas2
MPYIICYDITSNKTRKIIHDTLITQGEKVNLSVFELDLKECKLNSLIIKLNLLINPKTDTIKIYKIPTKTYLNTITIGTNPISTNYI
>NZ_CP035946.1|WP_172232954.1|1323133_1323505_-|hypothetical-protein
MNSMHLFFSHQLSDEQIKDAKTSLNITEFKALPKDLQTRFSNVPPSLDSLDEYAKDFYEYIDKNTKKGDFLLISGDFGLCFKLINYAKAKSLKPVYATTKREVLKDENGVKQSIFKHIKFREF
>NZ_CP035946.1|WP_172232957.1|1323501_1324968_-|hypothetical-protein
MSEVKMLNKKGLQIIKKANNKKDKDNIMQDENTQNNTNINQTQEKSKIKIISFLGMTKTDKDLKEFNQKCEKDSTQDKIKAPKQAKYILTRDFYKVFGVEKDTQDLDMWSATECLLKEFNNDNFEFTLYGTEKSILMQKPIYGALTPKEFDQKEYSKFLGDLINDLKSDFNSNKYKKIIVDITHGFRDNTILAIFAGLIQTNINKDFKINFIVAKEIVPFQEYEFISLDEYIENMVMSNVLSTFKQCLKVPDYNLDNPLYLALKNFSNALFKNQIQDINKNLKNLFYYDRNPIQSLANLQTLIDEIMQELKGLNNVNIKSAGNGKIKPKRAFYYELAVLYKKHDYFLNCVQFLLESIYLHIFNEFKQQLNRTENEYCYSEYKVIRDFLLSFEETKPNVNQNNHKYTKYKDLYPDDIKLFNSLINLAREIADLRHRMSHCDAFSDDYENNYKTRIEGFFSFYDEIFSNNLSFSKELKDRLILDAKEKTK
>NZ_CP035946.1|WP_172232960.1|1325043_1326375_-|hypothetical-protein
MGLRVTNQRKRVIFSSFGFKSKYAESTEYKLDENLKNALSLDIKTDKYLNMTDIYLKNFENKNAEFVFFSTEAAKNNQLDILKDFKKDKYELIIFDEKKHEELLNKLIKKIQDIEKNHERTDIIIDITHGFRDTTSVGLLAGLIEYSFSREDKKDNKMNFIFAKEFKDNDGVKFYTITSLNNYADVLKLSFILNTFKNTLKIIKSDVEHNFYKELVKLSDSVFENNIKEIQKAYKKLVVEKENISKNPNDIFFALLPMIEDILNELKEFDNFSDGSDYKDYFILCNLYLKKNYALNAAGFMLEGFQIRLWQYFMPNIAYDYAELQRVKNMLFVCVDGLKDENKGKDEKQKILANKLANYKYNEQEKTLFSKLLEYRKSVAKYRNDMSHISPNMKDKNGKKVDILEELKKIFILIQKIKIEELALIRADIKAIIKEYLSYEPKE
>NZ_CP035946.1|WP_172232963.1|1326374_1328483_-|TIGR03986-family-CRISPR-associated-RAMP-protein
MNGIFLEEFKKAGVDVSGIEQKIEKPNYEKDNVAIAPFNFINIRENNKPIVALYKKQDKEQNKKENNEKNNSDVKLDVFDKKLFTGEIEITLKSKTPFIVGDSTKDKKDPSKVCFFSVKNEIPQVSGSSFRGMVRNIFEIVSFSKFNNINNHRFYFRNVADGAKSPIGIAYDEVAAKLVPKKDNNGNEIIKNGKPEMKKVSKAHMGYLKCNGFRDYVIYPANYEYKHDKSDKELKNNAHKIMGKAFDFDVYSGYMNSKKTYYHIAEYKEDKSPIKLDYQRDVLPYKLDYENAQTSSQRKNYSSKTKSEEDITTINLFERLEEKRFKECGVPCFYIQAKDTNGNDYVFFGNTKFIRVPYFYTTLDCVDGVYKKDDKYDLTEFVFGKEGEFATRVFFEDLKLKNQEELQNKDDLKAYLDENIYTKEETTEPLLAPKPTAFNLYLANNEPSKILTYNGDANVKAKLKGFKMYHHKNLSNDLKEAMLDPNKDEKAMKNVLKSFKAVKSGVEFVGKIRFLNLKKEELGALLYSLNVDDKSVYKLGGAKPLGFGSVELKSTLKLFDIDKKYSDLFANDYFKKYENNSSDSKIKELVKHFKDITLKSIKENSKGFNDIKSYDDFERIKELKAMLDFKNTSLPNWDLNTKYMVVNFDKNSKNTDIKFDRKLILPSPRELKDHFLCTREQLEARHDECLNSKKDKNKAKGK
>NZ_CP035946.1|WP_172232966.1|1328482_1328920_-|hypothetical-protein
MKELLKDFVNAKVIIWTMDKIYFGIFDGVEVCSYDKKISTLDGILELRAFDGVKELYYWKEGSRVYEFKGDEINSTTKMLGKVIKCENGWSKVDDGRGGKFYLPLDKKDGEIIIEKCDIIGYHKKTHQAYIKGYAIKDYAIKEIR
>NZ_CP035946.1|WP_172232969.1|1328916_1330233_-|hypothetical-protein
MSQEVHKKLRKKIFYKGILENQTAFSIGTKEGDFIDSLCLKDKSNKPYISATSLAGVLKAKLKNNKLLGDNDNKSLVILSDCYLNDKSNYQVGIRNGVKINPTTNIAENKALFDYEVVFKGAEFDFECLINIYEDDFTSELQEFEKAINSELLVGMKTMSGFGEFAMKELFKIEFDFSKNDEFSRYESFLRKSFYESKVETKESNNKFEIKLELDITNSLLIGSVNNDGEIADIASLCEDGKSIASGTSFKGAIRHQALRIANTFSDKLGEKFVDELFGYVDGVAAKKSRVRVNESEIVRDYKTMKKALTKLHQRNKIDRFSGATIDGALFDARAIYDGKINLIIEVFSQKLEDEKNENLTDEEKEQIKARNEEKLKRYEKEKALMLFVARDLCAGFLAVGGGKNVGRGVFSGKFIAYENGKKLEPKEMNEIAKELLK
>NZ_CP035946.1|WP_172232973.1|1330229_1331651_-|hypothetical-protein
MMIFTLLDDVIFTSLSGDENTVDTKGYLSASAIKGAFKKLGVEYKNPQNAYFYDGKNIFYPAPMNLKKNKYVQEDLKIYTEIDEEKEKEELKKNKNLNIDKKSSIGGYICIKNGVLSKAKISTINKTHVSLADKENMSLKELEKYESEGEYKNKIFSYTALRKGQKFAIKLMYDEDFSKLDGKVLRLGKSANSQYGRVKISFESSNDKEVNFNGEFYLVAISPVLLRNEIGGFEPSFDALKSALKDIEECDLELKEIIISRYEKAQFYNNSYKCKTPQVMGFSIGSVFKVSGKLNDEFCMVGVQQEFGFGRLKAYASFNDLKLEKDQETKQTNEISSDELKIIEPALKNILKQDLEQRVFLSNEYKNYVIQDENYKKHGEIFSASELSRMQSIASAFETNKDFKTQFEDKYKDSAFYKKMQDKGLRLDKFDIAKHENEKYKSFYTDDIKNEIAKKVLISKIKYARKMLKKDEK
>NZ_CP035946.1|WP_172232976.1|1331647_1332229_-|hypothetical-protein
MILRITLSSNAIITNGNGDALIDLDSDYNKYGLPYISAKRIKGMLKDSANELISMGQDINVLKLFGDENNEGIIKLSDATLENSEILEKLSSEFKTDIIKNSFSVILNQTSLDEFGVAKAGSLRRFRAYDKGLVFESEIEGNLEFQKDLELICLNLRYIGHKRTRGFGKVKCELIEGKNTEQKMAKALMKMIK

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Crispr_ID: NZ_CP035946_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP035946_6

1322523-1322913

TypeIII

Consensus_repeat	Method
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC	PILER-CR
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC	CRISPRCasFinder
GCCCCGCTTTAGGGGATTGAAAC	CRT

5 spacers

cas2,cas1,csx20,csm3gr7,csx19,cas10,cas6

The CRISPR arrays of NZ_CP035946_6

>merge|NZ_CP035946|6|1322523-1322913|PILER-CR,CRISPRCasFinder,CRT
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAACGACAACTTAATATTTTTTAGCAGCTGATCTACCGTTTAAGAAGATAGCCCCGCTTTAGGGGATTGAAACATCAGAAGGCTTCATTTCATATCTATTATAACTTTTGTTTAAGAAGATAGCCCCGCTTTAGGGGATTGAAACTTTTTGTAGATGGTATCTACTCATAAATGCTTTTTTGTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAACATAAGCCTTGTTTTGCTTTAGCTATTTTTTTATTCGTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAACTGCAGTCTGCCATTGGCATTCCGCACTCGTCTAATGTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAA

>NZ_CP035946|6|4|1322523-1322913|PILER-CR
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC	GACAACTTAATATTTTTTAGCAGCTGATCTACC
GTTTAAGAAGATAGCCCCGCTTTAGGGGATTGAAAC	ATCAGAAGGCTTCATTTCATATCTATTATAACTTTT
GTTTAAGAAGATAGCCCCGCTTTAGGGGATTGAAAC	TTTTTGTAGATGGTATCTACTCATAAATGCTTTTTT
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC	ATAAGCCTTGTTTTGCTTTAGCTATTTTTTTATTC
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC	TGCAGTCTGCCATTGGCATTCCGCACTCGTCTAAT
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAA

>NZ_CP035946|6|6|1322523-1322913|CRISPRCasFinder
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC	GACAACTTAATATTTTTTAGCAGCTGATCTACC
GTTTAAGAAGATAGCCCCGCTTTAGGGGATTGAAAC	ATCAGAAGGCTTCATTTCATATCTATTATAACTTTT
GTTTAAGAAGATAGCCCCGCTTTAGGGGATTGAAAC	TTTTTGTAGATGGTATCTACTCATAAATGCTTTTTT
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC	ATAAGCCTTGTTTTGCTTTAGCTATTTTTTTATTC
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAC	TGCAGTCTGCCATTGGCATTCCGCACTCGTCTAAT
GTTTAAGAAGATTGCCCCGCTTTAGGGGATTGAAAA

>NZ_CP035946|6|4|1322536-1322913|CRT
GCCCCGCTTTAGGGGATTGAAAC	GACAACTTAATATTTTTTAGCAGCTGATCTACCGTTTAAGAAGATA
GCCCCGCTTTAGGGGATTGAAAC	ATCAGAAGGCTTCATTTCATATCTATTATAACTTTTGTTTAAGAAGATA
GCCCCGCTTTAGGGGATTGAAAC	TTTTTGTAGATGGTATCTACTCATAAATGCTTTTTTGTTTAAGAAGATT
GCCCCGCTTTAGGGGATTGAAAC	ATAAGCCTTGTTTTGCTTTAGCTATTTTTTTATTCGTTTAAGAAGATT
GCCCCGCTTTAGGGGATTGAAAC	TGCAGTCTGCCATTGGCATTCCGCACTCGTCTAATGTTTAAGAAGATT
GCCCCGCTTTAGGGGATTGAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP035946.1\|WP_172232939.1\|1316415_1318479_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|273041
NZ_CP035946.1\|WP_172232982.1\|1333717_1334479_-\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	mkCas0066_cas6_CAS-I:CAS-III	gnl\|CDD\|337605
NZ_CP035946.1\|WP_172232966.1\|1328482_1328920_-\|hypothetical-protein	csx19	cls001376_csx19_CAS-III-D	gnl\|CDD\|274900
NZ_CP035946.1\|WP_172232942.1\|1318565_1318934_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP035946.1\|WP_172232973.1\|1330229_1331651_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP035946.1\|WP_172232933.1\|1311376_1312729_+\|transcription-termination-factor-Rho	unknown	unknown	gnl\|CDD\|236490
NZ_CP035946.1\|WP_172232945.1\|1318887_1319310_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP035946.1\|WP_172232936.1\|1315127_1316426_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|197231
NZ_CP035946.1\|WP_172232963.1\|1326374_1328483_-\|TIGR03986-family-CRISPR-associated-RAMP-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274902
NZ_CP035946.1\|WP_172232979.1\|1332225_1333725_-\|hypothetical-protein	cas10	mkCas0133_cas10_CAS-III	gnl\|CDD\|187811
NZ_CP035946.1\|WP_172232957.1\|1323501_1324968_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP035946.1\|WP_172232969.1\|1328916_1330233_-\|hypothetical-protein	csm3gr7	cd09726_csm3gr7_CAS-III-D	gnl\|CDD\|377130
NZ_CP035946.1\|WP_172232954.1\|1323133_1323505_-\|hypothetical-protein	csx20	xls002255_csx20_CAS-I:CAS-III	gnl\|CDD\|238570
NZ_CP035946.1\|WP_172232948.1\|1320697_1321699_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187766
NZ_CP035946.1\|WP_172232951.1\|1321699_1321963_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP035946.1\|WP_172232960.1\|1325043_1326375_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378186
NZ_CP035946.1\|WP_172232930.1\|1308979_1311301_-\|heavy-metal-translocating-P-type-ATPase-metal-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|225127
NZ_CP035946.1\|WP_172234413.1\|1312725_1314450_+\|DNA-polymerase-III-subunit-gamma/tau	unknown	unknown	gnl\|CDD\|236267
NZ_CP035946.1\|WP_172232976.1\|1331647_1332229_-\|hypothetical-protein	csm3gr7	mkCas0198_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|377130
NZ_CP035946.1\|WP_172234411.1\|1308290_1308962_-\|cbb3-type-cytochrome-oxidase-assembly-protein-CcoS	unknown	unknown	gnl\|CDD\|319806

Protein	Function_ID	Function_description	E-value
NZ_CP035946.1\|WP_172232939.1\|1316415_1318479_-\|AAA-family-ATPase	gnl\|CDD\|273041	TIGR00376, DNA-binding_protein_SMUBP-2, DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases. [DNA metabolism, DNA replication, recombination, and repair].	6.29494e-60
NZ_CP035946.1\|WP_172232982.1\|1333717_1334479_-\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	gnl\|CDD\|337605	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6. Cas6 is a member of the RAMP (repeat-associated mysterious protein) superfamily. It is among the most widely distributed Cas proteins and is found in both bacteria and archaea. Cas6 functions in the generation of CRISPR-derived guide RNAs for invader defense in prokaryotes.	1.61045e-05
NZ_CP035946.1\|WP_172232966.1\|1328482_1328920_-\|hypothetical-protein	gnl\|CDD\|274900	TIGR03984, hypothetical_protein_FrEUN1fDRAFT_5778, CRISPR-associated protein, TIGR03984 family. Members of this protein family are found exclusively in CRISPR-containing organisms, in operon contexts with RAMP (repeat-associated mystery protein) proteins also linked to CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats).	4.46286e-08
NZ_CP035946.1\|WP_172232933.1\|1311376_1312729_+\|transcription-termination-factor-Rho	gnl\|CDD\|236490	PRK09376, rho, transcription termination factor Rho; Provisional.	0
NZ_CP035946.1\|WP_172232976.1\|1331647_1332229_-\|hypothetical-protein	gnl\|CDD\|377130	pfam03787, RAMPs, RAMP superfamily. The molecular function of these proteins is not yet known. However, they have been identified and called the RAMP (Repair Associated Mysterious Proteins) superfamily. The members of this family have no known function they are around 300 amino acids in length and have several conserved motifs.	1.80379e-09
NZ_CP035946.1\|WP_172232951.1\|1321699_1321963_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	4.22331e-16
NZ_CP035946.1\|WP_172232963.1\|1326374_1328483_-\|TIGR03986-family-CRISPR-associated-RAMP-protein	gnl\|CDD\|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	4.0516e-72
NZ_CP035946.1\|WP_172232969.1\|1328916_1330233_-\|hypothetical-protein	gnl\|CDD\|377130	pfam03787, RAMPs, RAMP superfamily. The molecular function of these proteins is not yet known. However, they have been identified and called the RAMP (Repair Associated Mysterious Proteins) superfamily. The members of this family have no known function they are around 300 amino acids in length and have several conserved motifs.	1.32005e-08
NZ_CP035946.1\|WP_172232954.1\|1323133_1323505_-\|hypothetical-protein	gnl\|CDD\|238570	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases. FruK plays an important role in the predominant pathway for fructose utilisation.This group also contains tagatose-6-phophate kinase, an enzyme of the tagatose 6-phosphate pathway, which responsible for breakdown of the galactose moiety during lactose metabolism by bacteria such as L. lactis.	0.000388429
NZ_CP035946.1\|WP_172232948.1\|1320697_1321699_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187766	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	3.25549e-58
NZ_CP035946.1\|WP_172232936.1\|1315127_1316426_-\|hypothetical-protein	gnl\|CDD\|197231	cd09133, PLDc_unchar5, Putative catalytic domain of uncharacterized hypothetical proteins with one or two copies of the HKD motif. Putative catalytic domain of uncharacterized hypothetical proteins with similarity to phospholipase D (PLD, EC 3.1.4.4). PLD enzymes hydrolyze phospholipid phosphodiester bonds to yield phosphatidic acid and a free polar head group. They can also catalyze transphosphatidylation of phospholipids to acceptor alcohols. Members of this subfamily contain one or two copies of the HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue) that characterizes the PLD superfamily.	7.97284e-26
NZ_CP035946.1\|WP_172232960.1\|1325043_1326375_-\|hypothetical-protein	gnl\|CDD\|378186	pfam09455, Cas_DxTHG, CRISPR-associated (Cas) DxTHG family. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. The family describes Cas proteins of about 400 residues that include the motif [VIL]-D-x-[ST]-H-[GS]. The CRISPR and associated proteins are thought to be involved in the evolution of host resistance. The exact molecular function of this family is currently unknown.	7.17979e-05
NZ_CP035946.1\|WP_172232930.1\|1308979_1311301_-\|heavy-metal-translocating-P-type-ATPase-metal-binding-domain-containing-protein	gnl\|CDD\|225127	COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and metabolism].	0
NZ_CP035946.1\|WP_172234413.1\|1312725_1314450_+\|DNA-polymerase-III-subunit-gamma/tau	gnl\|CDD\|236267	PRK08451, PRK08451, DNA polymerase III subunits gamma and tau; Validated.	0
NZ_CP035946.1\|WP_172232979.1\|1332225_1333725_-\|hypothetical-protein	gnl\|CDD\|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	0.00321717
NZ_CP035946.1\|WP_172234411.1\|1308290_1308962_-\|cbb3-type-cytochrome-oxidase-assembly-protein-CcoS	gnl\|CDD\|319806	cd07503, HAD_HisB-N, histidinol phosphate phosphatase and related phosphatases. This family includes the N-terminal domain of the Escherichia coli bifunctional enzyme histidinol-phosphate phosphatase/imidazole-glycerol-phosphate dehydratase, HisB. The N-terminal histidinol-phosphate phosphatase domain catalyzes the dephosphorylation of histidinol phosphate, the eight step of L-histidine biosynthesis. This family also includes Escherichia coli GmhB phosphatase which is highly specific for D-glycero-D-manno-heptose-1,7-bisphosphate, it removes the C(7)phosphate and not the C(1)phosphate, and this is the third essential step of lipopolysaccharide heptose biosynthesis. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	3.20277e-62

>NZ_CP035946.1|WP_172232951.1|1321699_1321963_-|CRISPR-associated-endonuclease-Cas2
MPYIICYDITSNKTRKIIHDTLITQGEKVNLSVFELDLKECKLNSLIIKLNLLINPKTDTIKIYKIPTKTYLNTITIGTNPISTNYI
>NZ_CP035946.1|WP_172232948.1|1320697_1321699_+|CRISPR-associated-endonuclease-Cas1
MQENYQQSLQKLQKQKSLKEVLHISKAGLSLSKEQEFFCVKNSKETVSKIHANKLKSIIINVNITLNSEVLFLAKKYKIAVLFVNKELESINIYTSSTSSKTFLAQAKLSDEKRLSLAKSIIIAKCKNQLNYIKRMNKYHKKYDENILKMMKIIIKLKKAKNNQEILAYEGGVALWYYECLCDRFNKYNFKKRYKKGAKDVVNMSLNYLYGILYNKILKLIIDNGLSPYVGLLHANNDKNISFVFDVIEEYRTYVVDFVVFGWFSYNPNVNDKDELSKELKEKLCKRFNARLLDKLSYKNQKISIENIITLQIQALKKAILNDDKYKGFCPRL
>NZ_CP035946.1|WP_172232945.1|1318887_1319310_-|hypothetical-protein
MDDNFFTYKIVDKQDNILMLEKNKKRFKAYILNKDENNTYISELAPKLCNIQYDNLMKCEFIEDKNKYYFITKDYETSTDIRSYFSCFLPISSYIKENLFKILDLFIELEKLGLNGCLPDKIIDSNGKLLLDYLCSFFFW
>NZ_CP035946.1|WP_172232942.1|1318565_1318934_-|hypothetical-protein
MASFCWIIYVHFFFGDKDCKSNIEVFKTIYKRYFPAFKNDNLDNFDDLISIKEHLLNSLVKNISKYEINLFPSAIKNYKEFIDTENIKNEFELRLELNKYINANNAYFLLENNKNNEKTIYI
>NZ_CP035946.1|WP_172232939.1|1316415_1318479_-|AAA-family-ATPase
MLDKIYKNGLFKDNIEFLLEVNNKNNNFDCKSIDELLKEIKQHSSSDDNAILYSEKSIKMEEDLLKAENDYIQSKKLSQIGTISNTKNNQLCFVIENANRHFKQNHKVIIKKLNYTQDDDELKGVVDKFVSTKSLLYVNIEDEYSKINLKQYDKNEILIKYSINYDYQAEEIVFKKKERALDELKKSNVYINNLASKLCEPNLNFTENNLIKIDEFFNKNLDENQQLAVKKALSLQDGSEILLIQGPPGTGKTTTIVEIIKQYLKLHPSYKMLITSQSNQAVDNVLEKICEEEQKILRIGNDESKMSEIARKYTPNKIINTIVSKNIKDLQENEIQEFKKNQDEFKEILQSITSKSVKNTDVEMFFIKNIKIIFGTLIGISSWNNFREIVFDLVIVDEAGRATLSELLVPCIKAKKIIFVGDHKQLAPIIDDDIANNLESYSKKEVITSLFEQLFNSNTKFNNLKHMLTYNYRAHKSICNIYSNVFYEGDLKTKDEINELKQHNIDCYIANLVWLNTGNLKDRADEQKGTGKINRCNAKIIKQELNTLQNYCKNNNLSIGIITPYKDQKYYLDNYLKDIVQKYKQDDIQIDIGTVDSFQGSDRDIIFYDCVRAGGGKKSKIDFIADEKRLNVSLSRAKKLLLIVGDIDFLYKSCTNNGFNPFKEIIEYIYKNKSEYEVRNLGEINEA
>NZ_CP035946.1|WP_172232936.1|1315127_1316426_-|hypothetical-protein
MKLNFNLIQHKFTYFGEDNNYELYDIKYVFYPVYKCIVNCIFKEDEQLTQIEVFILRLIDTTKSKISTIEKITCLDKDVLNTIISELIFKAYLDNNLNLSKKAKDYLNNIKSTKMVEKEFCVIFDAISADIIELSQSDIRLEHKVDKDAIELKRNNTLRPDNNCLNNIYKDDKTLKQVIFENIQNFENNETLKLYSVKDLSKISMFYKKHLCCFYKNSINEKKIVALNIASEDIVADEGISRLFDKLLEKEDFKVKENQATKDNSNRFENYTFTLDIKDGQIIDECSHKKYFKYILENAKNDIYIQSPWIRFQVLNEYLDYIKSALSRKVNIHIKYGIENKSKRDNKAIIDKKAEEVFIELKNNYANFKTYKDNSHEKFIICDNDFIINGSFNWLSYLHNEGNERKENSTITKNKDTINKKIKDFYNKEENK
>NZ_CP035946.1|WP_172234413.1|1312725_1314450_+|DNA-polymerase-III-subunit-gamma/tau
MMQAITLKYRPKSYDDLIGQSTVSKSLKFALDNQQIANAYLFSGLRGSGKTSSARILARCLNCKEKISSSPCMHCENCLAQNPSDVYELDAASNRGIESIQELIENTKFTPMHSRFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPNKIPATILSRVLHFRFKAISSSQITNRMKFILDNEKINYEEEALFIIARSANGSLRDALTLLEQAIIYSQNNVNTINVSTMLGIIDTNIIKNFFADILRANDDGIFKFLELAKEYEVNMILDEMSAYLKQAFFNKDRNFSLLLYERFFAILSKARYMAKISDDDEFNLCVMAFMLKEACYLKEVDEEIVKIQKEENKNTLFDDFVRQIQKRDYKLGLIFTNNTTFVSQNESEFVIKVNPKNEEEKNYFKQLFTVVKDIFASLDNSKKLVITSDYNQNNTQNNNSDDKDLQAKNKIANIQANLSISPKNYEQEEKEQMPEMQSDDFLSDDYELELDNIDELMIPEEALINLDDNVIDIILSAVIRLEIENNTLLVYVNPPYDEVELNILRANLINVIKKSIITLKLQDFKVINIQNEKKK
>NZ_CP035946.1|WP_172232933.1|1311376_1312729_+|transcription-termination-factor-Rho
MEKESNTSVEKSNHTNERNEKSEKRNQKKHIPVDGYKIEELKLLTLDKLIEIANEVEIENPREFRRQELMFEILKAQTKKGGFILFTGILEINQEGYGFLRAMDANLSDSANDAYVSNSQIKKFALRVGDIVTGQVREPKEQEKYYALLKIEAINYMPYTEAKQRALFDNLTPIFPTQKLKLEYDPMKLTGRVLDLFTPIGKGQRGLIVAPPRTGKTELMKELATAIAKNHPEANLIVLLIDERPEEVTDMQRCVKGEVFSSTFDQPALNHVRVAELVIEKAKRLVEMGKDVIILLDSITRLARAYNTATPSSGKVLSGGVDANALHKPKRFFGAARNIENGGSLTIVATALIDTGSRMDDVIFEEFKGTGNSEIILDRNISDRRIYPAINITKSGTRKEELLQGPINLPKIWAIRSAMNSMEDVEALKFLYSKMLKTANNDELLQGLNE
>NZ_CP035946.1|WP_172232930.1|1308979_1311301_-|heavy-metal-translocating-P-type-ATPase-metal-binding-domain-containing-protein
MKCAHCSLEYQENQLIKAGNLYFCCNGCKSVYEIIKSNNLDEFYKNANNLSKVEISNVDESVVFKEKIANNISQITFNIPNIHCSACVWLIEKFLLKNEAIVSININYFSKRAQVEFIDDKTSVQEILNQITKLGYKVLPLSADYNKAYKNHQKSYSKLIVAVVCVMNIMWLSIARYAGYFSSMDADIKDIINFAEFILCTPVLFYTALPMFNSAKNALKLKSLNMDCLVVGGALLAYIYSLCAMFLRLEYLYFDSVAMIICFVYAGKFLENLTKKNAIKNVDFLSDLINAEVNLIKNNEVVKSSVYEIKKGDVLRFFTGDKILFDGLCVGGKAKLNTSAITGEAKLKSVSLNSKIISSSVVYSGSCDVKTECEFKDSYIQKIANILNNTKKSNLQKLTDKISSYFCFAILFLAFICFLFNIENINEAIIRSVSVLIIACPCALALSAPVCNLCAINQALKHCILFKNANDVENLSKIKYAVFDKTGVLTSFNLKLSSYEIYSKKDILEELLSLNNHILALNIKDNLKLTKHIISNENYTQIDGKGVIYIKDNKKYFLGSAKFLKENGVNVKSFDKTEVFFADEKELLAYFVFENKINDGALELINFLKSKNIECIMLSGDKEQECKKTAQSLNITKYKAECLPTDKIDFLTSLNSKEILMIGDGINDALALKQALVSISFKQASDLAKNTSDIIILDDNLNKIKSAIRLAKRTYFTIKTNLLISLFYNLISLPLAFNGYINPLVAALFMSFSSICVILNAQRLNNFLTKEVK
>NZ_CP035946.1|WP_172234411.1|1308290_1308962_-|cbb3-type-cytochrome-oxidase-assembly-protein-CcoS
MIAVSIILAFIALLAFIWGLKNKQFLDKDAFLNLNDSEEALNDAITLENRKKQALKKRALFLDRDGVINVDFSYVYERLEFVDGIFDLCKYFYDKAYLIIVITNQSGIGRGYFTKEQMQEFHLRIQNEFKKHNIEIKEFFVCPHTPDDNCECRKPKPKMILDAIKKYDIDENNCVFVGDKISDVQAAFAANIENIYLFTKDKLEQKNCKIIDDFNKIIKDFNA
>NZ_CP035946.1|WP_172232954.1|1323133_1323505_-|hypothetical-protein
MNSMHLFFSHQLSDEQIKDAKTSLNITEFKALPKDLQTRFSNVPPSLDSLDEYAKDFYEYIDKNTKKGDFLLISGDFGLCFKLINYAKAKSLKPVYATTKREVLKDENGVKQSIFKHIKFREF
>NZ_CP035946.1|WP_172232957.1|1323501_1324968_-|hypothetical-protein
MSEVKMLNKKGLQIIKKANNKKDKDNIMQDENTQNNTNINQTQEKSKIKIISFLGMTKTDKDLKEFNQKCEKDSTQDKIKAPKQAKYILTRDFYKVFGVEKDTQDLDMWSATECLLKEFNNDNFEFTLYGTEKSILMQKPIYGALTPKEFDQKEYSKFLGDLINDLKSDFNSNKYKKIIVDITHGFRDNTILAIFAGLIQTNINKDFKINFIVAKEIVPFQEYEFISLDEYIENMVMSNVLSTFKQCLKVPDYNLDNPLYLALKNFSNALFKNQIQDINKNLKNLFYYDRNPIQSLANLQTLIDEIMQELKGLNNVNIKSAGNGKIKPKRAFYYELAVLYKKHDYFLNCVQFLLESIYLHIFNEFKQQLNRTENEYCYSEYKVIRDFLLSFEETKPNVNQNNHKYTKYKDLYPDDIKLFNSLINLAREIADLRHRMSHCDAFSDDYENNYKTRIEGFFSFYDEIFSNNLSFSKELKDRLILDAKEKTK
>NZ_CP035946.1|WP_172232960.1|1325043_1326375_-|hypothetical-protein
MGLRVTNQRKRVIFSSFGFKSKYAESTEYKLDENLKNALSLDIKTDKYLNMTDIYLKNFENKNAEFVFFSTEAAKNNQLDILKDFKKDKYELIIFDEKKHEELLNKLIKKIQDIEKNHERTDIIIDITHGFRDTTSVGLLAGLIEYSFSREDKKDNKMNFIFAKEFKDNDGVKFYTITSLNNYADVLKLSFILNTFKNTLKIIKSDVEHNFYKELVKLSDSVFENNIKEIQKAYKKLVVEKENISKNPNDIFFALLPMIEDILNELKEFDNFSDGSDYKDYFILCNLYLKKNYALNAAGFMLEGFQIRLWQYFMPNIAYDYAELQRVKNMLFVCVDGLKDENKGKDEKQKILANKLANYKYNEQEKTLFSKLLEYRKSVAKYRNDMSHISPNMKDKNGKKVDILEELKKIFILIQKIKIEELALIRADIKAIIKEYLSYEPKE
>NZ_CP035946.1|WP_172232963.1|1326374_1328483_-|TIGR03986-family-CRISPR-associated-RAMP-protein
MNGIFLEEFKKAGVDVSGIEQKIEKPNYEKDNVAIAPFNFINIRENNKPIVALYKKQDKEQNKKENNEKNNSDVKLDVFDKKLFTGEIEITLKSKTPFIVGDSTKDKKDPSKVCFFSVKNEIPQVSGSSFRGMVRNIFEIVSFSKFNNINNHRFYFRNVADGAKSPIGIAYDEVAAKLVPKKDNNGNEIIKNGKPEMKKVSKAHMGYLKCNGFRDYVIYPANYEYKHDKSDKELKNNAHKIMGKAFDFDVYSGYMNSKKTYYHIAEYKEDKSPIKLDYQRDVLPYKLDYENAQTSSQRKNYSSKTKSEEDITTINLFERLEEKRFKECGVPCFYIQAKDTNGNDYVFFGNTKFIRVPYFYTTLDCVDGVYKKDDKYDLTEFVFGKEGEFATRVFFEDLKLKNQEELQNKDDLKAYLDENIYTKEETTEPLLAPKPTAFNLYLANNEPSKILTYNGDANVKAKLKGFKMYHHKNLSNDLKEAMLDPNKDEKAMKNVLKSFKAVKSGVEFVGKIRFLNLKKEELGALLYSLNVDDKSVYKLGGAKPLGFGSVELKSTLKLFDIDKKYSDLFANDYFKKYENNSSDSKIKELVKHFKDITLKSIKENSKGFNDIKSYDDFERIKELKAMLDFKNTSLPNWDLNTKYMVVNFDKNSKNTDIKFDRKLILPSPRELKDHFLCTREQLEARHDECLNSKKDKNKAKGK
>NZ_CP035946.1|WP_172232966.1|1328482_1328920_-|hypothetical-protein
MKELLKDFVNAKVIIWTMDKIYFGIFDGVEVCSYDKKISTLDGILELRAFDGVKELYYWKEGSRVYEFKGDEINSTTKMLGKVIKCENGWSKVDDGRGGKFYLPLDKKDGEIIIEKCDIIGYHKKTHQAYIKGYAIKDYAIKEIR
>NZ_CP035946.1|WP_172232969.1|1328916_1330233_-|hypothetical-protein
MSQEVHKKLRKKIFYKGILENQTAFSIGTKEGDFIDSLCLKDKSNKPYISATSLAGVLKAKLKNNKLLGDNDNKSLVILSDCYLNDKSNYQVGIRNGVKINPTTNIAENKALFDYEVVFKGAEFDFECLINIYEDDFTSELQEFEKAINSELLVGMKTMSGFGEFAMKELFKIEFDFSKNDEFSRYESFLRKSFYESKVETKESNNKFEIKLELDITNSLLIGSVNNDGEIADIASLCEDGKSIASGTSFKGAIRHQALRIANTFSDKLGEKFVDELFGYVDGVAAKKSRVRVNESEIVRDYKTMKKALTKLHQRNKIDRFSGATIDGALFDARAIYDGKINLIIEVFSQKLEDEKNENLTDEEKEQIKARNEEKLKRYEKEKALMLFVARDLCAGFLAVGGGKNVGRGVFSGKFIAYENGKKLEPKEMNEIAKELLK
>NZ_CP035946.1|WP_172232973.1|1330229_1331651_-|hypothetical-protein
MMIFTLLDDVIFTSLSGDENTVDTKGYLSASAIKGAFKKLGVEYKNPQNAYFYDGKNIFYPAPMNLKKNKYVQEDLKIYTEIDEEKEKEELKKNKNLNIDKKSSIGGYICIKNGVLSKAKISTINKTHVSLADKENMSLKELEKYESEGEYKNKIFSYTALRKGQKFAIKLMYDEDFSKLDGKVLRLGKSANSQYGRVKISFESSNDKEVNFNGEFYLVAISPVLLRNEIGGFEPSFDALKSALKDIEECDLELKEIIISRYEKAQFYNNSYKCKTPQVMGFSIGSVFKVSGKLNDEFCMVGVQQEFGFGRLKAYASFNDLKLEKDQETKQTNEISSDELKIIEPALKNILKQDLEQRVFLSNEYKNYVIQDENYKKHGEIFSASELSRMQSIASAFETNKDFKTQFEDKYKDSAFYKKMQDKGLRLDKFDIAKHENEKYKSFYTDDIKNEIAKKVLISKIKYARKMLKKDEK
>NZ_CP035946.1|WP_172232976.1|1331647_1332229_-|hypothetical-protein
MILRITLSSNAIITNGNGDALIDLDSDYNKYGLPYISAKRIKGMLKDSANELISMGQDINVLKLFGDENNEGIIKLSDATLENSEILEKLSSEFKTDIIKNSFSVILNQTSLDEFGVAKAGSLRRFRAYDKGLVFESEIEGNLEFQKDLELICLNLRYIGHKRTRGFGKVKCELIEGKNTEQKMAKALMKMIK
>NZ_CP035946.1|WP_172232979.1|1332225_1333725_-|hypothetical-protein
MSEVLVLVDIAAKQEYIFSSNKLKDMVGASEIIARATDVETIKENCKEFDFDTSKIKDGFSGGGNAYLFFDELEIAKEFIKKYSLHLLKTYPSLVPYLLPFKMSGEYQKDIADAKDELDKIRNSFYPLTHSLNIGFERLCPSSNIGVDNEGKISKATDIKRKMVEKSKRFNKYLEGKGYEFSSELDKIYIHNNAFISVVHCDINALGQKVRKLKNKEESKEFSKKIDLIMQEAFAKMIDKLVNHLDNGGFEFKDVKITKDSFKDKKENKYYLPIRPIILNGDDFTFVSEGRLGVWLSKIFIKELENAFEEKNKNFNNELKEIFGGSLYASAGIAICKAKTPFSRAYQLSEELASKAKALAKEDESKSSLAFLILSNQVKSGLNYLENTYTSERTTGKNEFINHKGYFINNKNEKYKGYDFDELLSLIKILNKMARSKMMKIRDLLFYNDERSLTQYIEIYCENDEFNASDLLDGNEIKHKNMLLDAIELSAFYPQKDGQ
>NZ_CP035946.1|WP_172232982.1|1333717_1334479_-|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6
MKYVKLSVKNININTKYEFNGSAIRGTLGWALKSVDENVFALFFNKDNTNTKYRLDVDFNTYDFSIYLFNEYIKFTPYFALAIEKMRAFGLGVNRQKFDYEMILLNDEAFMDNKGNVLNKDIKSLEFVEQNVCKNVKVIFKSPFMINDKKSNFDPLSFFISIKRRVNEMNKISERVFFDNNFLFSQKLYDYNLLRYSNNQGKKMNFFAKIGEINFYNLDEECFKLLDLSTLIGVGKHTAFGFGKIILERMENE

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Crispr_ID: NZ_CP035946_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP035946_7

1688989-1689083

Orphan

Consensus_repeat	Method
ATGTTTGAAAATGCAAGAGTTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP035946_7

>merge|NZ_CP035946|7|1688989-1689083|CRISPRCasFinder
ATGTTTGAAAATGCAAGAGTTTTCAATCAAGAACTTAATTTTGATACAAGAAGTGCTACAACAATGCAAAGAATGTTTGAAAATGCAAGAGATTT

>NZ_CP035946|7|7|1688989-1689083|CRISPRCasFinder
ATGTTTGAAAATGCAAGAGTTTT	CAATCAAGAACTTAATTTTGATACAAGAAGTGCTACAACAATGCAAAGA
ATGTTTGAAAATGCAAGAGATTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP035946.1\|WP_172233886.1\|1678703_1679396_-\|response-regulator	unknown	unknown	gnl\|CDD\|223816
NZ_CP035946.1\|WP_172233882.1\|1673791_1674934_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271182
NZ_CP035946.1\|WP_172233902.1\|1692663_1692957_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226115
NZ_CP035946.1\|WP_172233906.1\|1693476_1693998_-\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239488
NZ_CP035946.1\|WP_172233904.1\|1693169_1693454_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378426
NZ_CP035946.1\|WP_172234439.1\|1689435_1690515_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224172
NZ_CP035946.1\|WP_172233885.1\|1677123_1678719_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223715
NZ_CP035946.1\|WP_172233912.1\|1702000_1703518_-\|MBOAT-family-protein	unknown	unknown	gnl\|CDD\|224610
NZ_CP035946.1\|WP_172230878.1\|1694467_1694845_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP035946.1\|WP_172233888.1\|1681263_1684245_+\|tetrathionate-reductase-subunit-TtrA	unknown	unknown	gnl\|CDD\|237883
NZ_CP035946.1\|WP_172233910.1\|1701653_1701794_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP035946.1\|WP_172233887.1\|1680215_1681262_+\|polysulfide-reductase-NrfD	unknown	unknown	gnl\|CDD\|309148
NZ_CP035946.1\|WP_172233898.1\|1690710_1691634_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP035946.1\|WP_172233890.1\|1684591_1685029_+\|PH-domain-containing-protein	unknown	unknown	gnl\|CDD\|367615
NZ_CP035946.1\|WP_172233908.1\|1700311_1701292_-\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|227305
NZ_CP035946.1\|WP_172233894.1\|1685468_1686947_+\|BspA-family-leucine-rich-repeat-surface-protein	unknown	unknown	gnl\|CDD\|308794
NZ_CP035946.1\|WP_172233892.1\|1685051_1685306_-\|autotransporter-outer-membrane-beta-barrel-domain-containing-protein	unknown	unknown	unknown
NZ_CP035946.1\|WP_172234437.1\|1679590_1680214_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|319873
NZ_CP035946.1\|WP_172233884.1\|1675407_1677147_+\|conjugal-transfer-protein-TraF	unknown	unknown	gnl\|CDD\|372693
NZ_CP035946.1\|WP_172233900.1\|1691634_1692066_-\|DUF4065-domain-containing-protein	unknown	unknown	gnl\|CDD\|226128

Protein	Function_ID	Function_description	E-value
NZ_CP035946.1\|WP_172233886.1\|1678703_1679396_-\|response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	3.65794e-32
NZ_CP035946.1\|WP_172233882.1\|1673791_1674934_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271182	cd00801, INT_P4_C, Bacteriophage P4 integrase, C-terminal catalytic domain. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. The P4 integrase mediates integrative and excisive site-specific recombination between two sites, called attachment sites, located on the phage genome and the bacterial chromosome. The phage attachment site is often found adjacent to the integrase gene, while the host attachment sites are typically situated near tRNA genes. This family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	3.07218e-59
NZ_CP035946.1\|WP_172233902.1\|1692663_1692957_+\|hypothetical-protein	gnl\|CDD\|226115	COG3587, COG3587, Restriction endonuclease [Defense mechanisms].	0.00948906
NZ_CP035946.1\|WP_172233906.1\|1693476_1693998_-\|phosphatase-PAP2-family-protein	gnl\|CDD\|239488	cd03394, PAP2_like_5, PAP2_like_5 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	3.5413e-32
NZ_CP035946.1\|WP_172233904.1\|1693169_1693454_-\|hypothetical-protein	gnl\|CDD\|378426	pfam10397, ADSL_C, Adenylosuccinate lyase C-terminus. This is the C-terminal seven alpha helices of the structure whose full length represents the enzyme adenylosuccinate lyase. This sequence lies C-terminal to the conserved motif necessary for beta-elimination reactions, Adenylosuccinate lyase catalyzes two steps in the synthesis of purine nucleotides: the conversion of succinylaminoimidazole-carboxamide ribotide into aminoimidazole-carboxamide ribotide, the eighth step of the de novo pathway, and the formation of adenosine monophosphate (AMP) from adenylosuccinate, the second step in the conversion of inosine monophosphate into AMP.	2.4519e-06
NZ_CP035946.1\|WP_172234439.1\|1689435_1690515_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|224172	COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion].	5.5718e-86
NZ_CP035946.1\|WP_172233885.1\|1677123_1678719_-\|hypothetical-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.05891e-32
NZ_CP035946.1\|WP_172233888.1\|1681263_1684245_+\|tetrathionate-reductase-subunit-TtrA	gnl\|CDD\|237883	PRK14991, PRK14991, tetrathionate reductase subunit TtrA.	0
NZ_CP035946.1\|WP_172233887.1\|1680215_1681262_+\|polysulfide-reductase-NrfD	gnl\|CDD\|309148	pfam03916, NrfD, Polysulphide reductase, NrfD. NrfD is an integral transmembrane protein with loops in both the periplasm and the cytoplasm. NrfD is thought to participate in the transfer of electrons, from the quinone pool into the terminal components of the Nrf pathway.	6.16244e-22
NZ_CP035946.1\|WP_172233890.1\|1684591_1685029_+\|PH-domain-containing-protein	gnl\|CDD\|367615	pfam03703, bPH_2, Bacterial PH domain. Domain found in uncharacterized family of membrane proteins. 1-3 copies found in each protein, with each copy flanked by transmembrane helices. Members of this family have a PH domain like structure.	3.76221e-10
NZ_CP035946.1\|WP_172233908.1\|1700311_1701292_-\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	gnl\|CDD\|227305	COG4970, FimT, Tfp pilus assembly protein FimT [Cell motility and secretion / Intracellular trafficking and secretion].	2.614e-06
NZ_CP035946.1\|WP_172233894.1\|1685468_1686947_+\|BspA-family-leucine-rich-repeat-surface-protein	gnl\|CDD\|308794	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285. This region appears distantly related to leucine rich repeats.	3.85508e-21
NZ_CP035946.1\|WP_172233912.1\|1702000_1703518_-\|MBOAT-family-protein	gnl\|CDD\|224610	COG1696, DltB, Predicted membrane protein involved in D-alanine export [Cell envelope biogenesis, outer membrane].	4.48226e-73
NZ_CP035946.1\|WP_172234437.1\|1679590_1680214_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|319873	cd10551, PsrB, polysulfide reductase beta (PsrB) subunit. This family includes the beta subunit of bacterial polysulfide reductase (PsrABC), an integral membrane-bound enzyme responsible for quinone-coupled reduction of polysulfides, a process important in extreme environments such as deep-sea vents and hot springs. Polysulfide reductase contains three subunits: a catalytic subunit PsrA, an electron transfer PsrB subunit and the hydrophobic transmembrane PsrC subunit. PsrB belongs to the DMSO reductase superfamily that contains [4Fe-4S] clusters which transfer the electrons from the A subunit to the hydrophobic integral membrane C subunit via the B subunit. In Shewanella oneidensis, which has highly diverse anaerobic respiratory pathways, PsrABC is responsible for H2S generation as well as its regulation via respiration of sulfur species. PsrB transfers electrons from PsrC (serving as quinol oxidase) to the catalytic subunit PsrA for reduction of corresponding electron acceptors. It has been shown that T. thermophilus polysulfide reductase could be a key energy-conserving enzyme of the respiratory chain, using polysulfide as the terminal electron acceptor and pumping protons across the membrane.	4.47538e-96
NZ_CP035946.1\|WP_172233884.1\|1675407_1677147_+\|conjugal-transfer-protein-TraF	gnl\|CDD\|372693	pfam13729, TraF_2, F plasmid transfer operon, TraF, protein.	2.57764e-10
NZ_CP035946.1\|WP_172233900.1\|1691634_1692066_-\|DUF4065-domain-containing-protein	gnl\|CDD\|226128	COG3600, GepA, Uncharacterized phage-associated protein [Function unknown].	2.44882e-19

>NZ_CP035946.1|WP_172233894.1|1685468_1686947_+|BspA-family-leucine-rich-repeat-surface-protein
MKFLPENKTELKELLSNKSINLADINTSLITDMSYLFYNTTRSNFDGINTWDTSKVESFEGMFAKASNFNEIITFNTCNANNLSKMFFACEKLNQALVLDVKNASDISEMFYGCENLNSKISFKNSENIQNASMLFKNCKKLNVKINYEFANLLNADEMLSYCYKLNQEIRLIAPKLKSANAMFSYSSNLNSDVLIKSNDLIEAKELFSNCYEMRAKITLDIDFSKLLYTSFMFLSCNNLRHVDIAFREDVDFYTAFIGCDKLDKKIIRIHNSNKYYKIKNFEGYKRDDIDAKTLLKLRNDSKVSKIYTHKIEYIDGLIYLANTDEELLNMEFKNNCFIPKNKDELKRLIYEFNASLDMIDVCKIDDFSYLFADKLSNDFDFKPLKNWNTSNAINMQAMFLGQSNFNQKITFNTKNVKNYKQMFAGCKNLSKVPLLDTFNAENMQEMFNNCPRIKIINESKEFVILQGSGDLNKDKIKYKIPKNTIIKAKND
>NZ_CP035946.1|WP_172233892.1|1685051_1685306_-|autotransporter-outer-membrane-beta-barrel-domain-containing-protein
MNNTNEIELTLKSEAKFTSATKLALSDGVITRVEKGFKDSRGFASIGANFNLGNNTKFSLDTEKTFSGKYNTNYNINATLRYSF
>NZ_CP035946.1|WP_172233890.1|1684591_1685029_+|PH-domain-containing-protein
MSYVEQVLGTDENVVMKAKVSIFAFVVELLAILVLAILCFNASFLFIVPILFLVARIYITITTTELALTNKKVIAKFGLIRRNTIELRLEKIESIRVDQGILGRIFNYGTIFINGAGSAAPIPFIGTPIDFKRKVDEYIENKLSK
>NZ_CP035946.1|WP_172233888.1|1681263_1684245_+|tetrathionate-reductase-subunit-TtrA
MKRRKFLLTSGLSLSLSAALGYKNTIKKIFTNDEFSDNISTNSLECEVFIENNTVKFNDKFSIATSLCNGCTTFCSVRALIDNNKVIKTFGNPYSLLSSDPWLDMQVSLKDSFLKLNDINSLNSRSTCCARGSSIHHKMYDEFRVTKALKRVGKRGENKWKSISIEELINEIVNGGNLFNEGYVDGLKSICNTKKLIDENNPDYGPVANQLCILGTADEGRQNFLTHRFAQSFGTINYLGHTAICGLSMRAGEAAYLDDFTSYAHLKPDYEHCKFLLNIATAPAQAGNPFKRQAHLLAQARTYNNLKYVCVTPNLTNADSFAVNENSRWIAIKPGEDLAFVMAMLRVIIENKFYNEKYLQIPSLKSQIALNDVSFTNASYLVCKDKNKEFLKDEGSILVIDSVDNKVKKADFVLQAILDFNGEVEYKNKKYQVQTSFNILKENSFLKSVKEYAKICDVKEEIIFELAKEFCSYGRCVATDCHGGTMHTTGFYTAYAIMMLGAMVGNLNHKGGMSVGGGKYASFNGKCFNLLSYKGKVKPFGTRIDRARKAYETSTEFKNKIKNNQNPYPAKDKWFAFTNALENEVLSSSANAYPYKLKALITWGANIVYGQNNNKDVIALLKDPSKAAPLFIAIDPFINETSIYADYIVPDSVLFETWGVLSPWAAYNTKTTHLRYPIVKSPNDTFKNQESICMDSFIIELAKALKLPSFGKNAIMDNEGNFYDLDRPQDFYLRAFLNVAMDEDELSDISDEELKISSLLEYKDSLKKICKDKWRKVAFLMSRGGRFAKKNTAYKNNALSNSYTKAIAIYNEKLGTSINSLTGKRYNGSVKYYPQSYADGSMIKMNKEFNLLAFSYKSNIFSSASATLDILKEIKYATYADINTKTAKKYNIKNADKIKISTKDSSIIAYARLKEGIYPNAIGIEYASARRAEGARDLIIDNVLIKAKKIRQTGVYYNRLGLDDISRLKYKGISDFVVGSNARTALAVKIEKI
>NZ_CP035946.1|WP_172233887.1|1680215_1681262_+|polysulfide-reductase-NrfD
MQVDLIHSLVNISPERPWGIMIVNYFFLTGISAASFIIANLYFVFKKSAFKSFSFFALLISFSFLIVAPLNLIDDLSKPSNLLSVFFYGWENFFTSPMKWGVLLLISYFFISLMQLFFLCKKNNFQYEKNIFYLGVLGIILAIAIEFYTAYLIAILNSFIFTHTALMPVLFLASALFSASATLIILLVLYESFYLKQKLSITNYITLIKFLALCACIDFILKIFWFSFLFLFNTQSQELLQIFLKKESFMLFFVDMGLCLLLPIFIAFRFYNNIFMILIAALLSLIGTFIFRYNLIIKTQSFPKQTTSFLKYHLDLSSFISIASNYALLLALFCFVLAIFDKNILKGK
>NZ_CP035946.1|WP_172234437.1|1679590_1680214_+|4Fe-4S-dicluster-domain-containing-protein
MLIDLRKCVACHSCTVSCKIENKTPANKFRTNVAEFEIGLYPNVRKAFLPSLCNHCDNAPCISVCPTGATFKRKDGIVVVDASVCWGCGYCVNACPYDKRFINPITKVADKCNFCLHRLNANLLPACVQNCVGGARIIGDLNDSSSLISKLLATHQSSVLKQSSKTKPNVYYIGLNGQLSDNIFSLDDVDGILKSKNQTSIWQSKGE
>NZ_CP035946.1|WP_172233886.1|1678703_1679396_-|response-regulator
MNELINIFKHLTVLNVEDEEEVRKALSANLSLFFKNVYEAKDGKEALDIFYEKKPDVIFMDICIPKINGIKVLKELRNNYKKIPIIIMSAYNEQEYFLQAIELNICKFLIKPFSKDDFLTSLKNAAKWMYDYTDEYKIIINKNIIYEPLKSSISYENKTHILTKKEKQVFEYLLKHKNCVVSFEQLEFELYNDSNEHKDALKAVIKQLRKKLPNKIIKNIFGVGYQCLCE
>NZ_CP035946.1|WP_172233885.1|1677123_1678719_-|hypothetical-protein
MPLRIKSLKLSTKNKTMILVLALFLFTIVIFSILRQVDIKQLIALSLKDYKEQVEYIYKTVLKKSDEFYESRAKANYKSQQIKHFLKEENAKELKKLSINRWNILKEENPYLINMKFYNNKGNLITYLGSLNKSHKPNEKNYFYLEDNKLSYHIITPFFEKEKIVAFIEFSFEADYIIKQIKEFSNLNAHIVFNNKGKDNINLIEHIINLNNKDGKNIAKMVFYQDISTQQNNIKNTLYEAIAISIALMFVIICILHFGFKVLIKKLELSENSLKNLNLTLEQKVQNELAKRLEQEKILMQQNRLASMGEMIANIAHQYRQPLATLSCIITHISLLYDLNKLNKSEFKKQEQKAQDLIIHMSKTIDDFRNFFKSDKIKEEFNLITNINKALNLIEPALHNHNINIIFDEKDEIKIYAYANQFSQVILNILANAKDMLLERKVKNPWIKIYLQNLKEEVIINIEDNAKGISIKPIEKIFEPYISTKHASSGTGIGLYMCNVIIKDNLKGSLWAKNTQQGAIFSIKLPTITTA
>NZ_CP035946.1|WP_172233884.1|1675407_1677147_+|conjugal-transfer-protein-TraF
MKNKLLLSLLACAYLQALEFGYMGNISTSMGGAGVALEDNDFALYYNPALLTKSKDSFAYSFGISFSQNKLFELSKIDKNTDDNLKNQLEKVKNIFVKNNNVLAAANNTSSTNNKYGNFSPVVSDFIKNNKDTNNEFSELAKALEGTNGQQNTSLETAIKNIQEKAKNDPSIEERLTEQLLKSTENSKNDLETNNVDAALLGNIISATDSTKFLDIVNKSSKDNNGAIDIGTFLTDLGDIDLTNLVDDKTASDISVVYDSANGKNDIRIISQNGFVYNFAKNDNRGAISFGIFTTLNANANAALDPNHNVLIVKLSDNKTYIKLDIKDGKMHAISSTKEEFEASSALNKQVNHALNAGSLALLEVPVAYADEFALTYGDLSLGTTFKYIFAAGYDIRKNVNIDLNGINKINFKNDLKDPTYTHTIGLDLGVLYSLDDLNLAMVIKNINNPKVKLSKNTATHLNPQVRIGAAYKLNDLSFAMDLDLLSNKTLSLNYPKSQTIGAGVKWDIFKNFNVRGGLMYDFKQDQGAIITAGMNVFNFFDLSIQSSFKTAQCSNNVCSKNIKLPQYFTLKLGGSYSW
>NZ_CP035946.1|WP_172233882.1|1673791_1674934_-|tyrosine-type-recombinase/integrase
MTNKQIQALKPKSKRYKVSVYNNIYIYVGTNGNKTFYYRYNDNGKDKIKKLNNFNISYGIEQAINDYTKLAENISRGFTKTINKSLNDLFDEFLASKEKAVTDKTYKRYISTFRIFESLKNNNLSDLKALQIVECLKSCDKKEASYRAFTLINQLYEFAICNGDEVINPLAKVKPSVLLGKKDTKNYATLTNDDDLTRLFTIIRTANTNILYKYALILQSLTALRTQNIRAMRWEWINFNDGFLSIPSEQMKTKKPFYLPLNSQALKILNFMKATLKADEIFIFPSRTNKKEPYISDNTLRIILRRGGITKDEFTPHGFRAMFSTIANDNNYSSEIIELCLAHTVGGVKGIYDRSHKLEAKRELMQWWGDYLEKYIKDFL
>NZ_CP035946.1|WP_172234439.1|1689435_1690515_-|FAD-dependent-oxidoreductase
MKKIVFLGAGYANLTLIKKIKKKNLSKAEFILINNNPYHYKTTELHKIAARESEKDIVINLKSILPKDVTLICDKVKSIENGKVVCENANYDYDELYVGLGASINTFGIAGLDECLNIINYKNALNTAETLYKNLELYENKNVIICGAGLSGVELCGSIATTCKNLGISINLYLVEAMDEILPVYAKDLAKKARNYLENLGVKVLSSHKIIKKVDDKLFLNDENNYIEAKTIIFTAGVKGSEVIANSGFNHKNNRVLVNEYLMAPNFDNCYVLGDSAIVSNFAPTAQIACKQGKYLAKRLNAKFEGTEFNEPFKYNDKGSICSVGKDYAIGVILGKTYSAFMAKSLKKLTEVEWSETLK
>NZ_CP035946.1|WP_172233898.1|1690710_1691634_-|hypothetical-protein
MDLNDKLIESIKNTEPVQLTSVKSYTKILLDILKKLSDDKVSEDNFKDIANTIKTIYKNNDFRHSYSEIGVFVKDNFASMEIIINNLTEIEKYIDDKIEGIRKKFIKLIDHINLEYNRLKDFQSTKENINEILKFKSEFNSFKSEFDSFKSEFDIIKSDANNLKKEFITILGVFAAIFMVFDSGLKIELELLSFIKNDDKILLIIFIAIFTLFLLLSFYNFISIIYKSDFKNQKTQAEITKDQWINFHWVLIRPLNVFIIFVISALFYTLPIKDNDDIESNIKKEVSQKSQIKIETNNINQENNEDK
>NZ_CP035946.1|WP_172233900.1|1691634_1692066_-|DUF4065-domain-containing-protein
MKIYDLASYIVNRSIALGLPVSNLKLQKMLYFINLIYLGKYNKFLIEDLDDYPFEAWRYGPVIRSVYDRFSCYGGIPIGLEQPHCDVDNEVSEFLNYNIDRLVNIEPWRLVEWSHMPDGAWDKTCKNNDSVISKELIKKDAGL
>NZ_CP035946.1|WP_172233902.1|1692663_1692957_+|hypothetical-protein
MQVSLKSVVKILSKINNNVFNTIFNNPQNFCEKVSNKINETKALLLTVGLEHNKTDELNKSSKRIYNIIMLNSNIEKEFLQHYKKHKQIKLFIKLTN
>NZ_CP035946.1|WP_172233904.1|1693169_1693454_-|hypothetical-protein
MHIKYKLFKALYDSVKSEIKNIQKNVAIKKYRAKNFSLAEAINENKEIKSLLNTDEIKAVFNSDYHLKNVDKIKNYKFLFQIFQKLWNLKQEYK
>NZ_CP035946.1|WP_172233906.1|1693476_1693998_-|phosphatase-PAP2-family-protein
MKKIIIFFVILSNLYANIFTDKEKARKIGDIVQISLPFYAIVTTIYNDDFVDGGKNFLISFVSTQASVEILKRVVREERPNKSNSLSFPSGHSAASFTSASFIHKRYGLNQAIIPYILATYVGYSRVKARKHYTHDVIAGGLLAGMISYFLVDRKISIESVNKGAIITFNLNF
>NZ_CP035946.1|WP_172230878.1|1694467_1694845_-|hypothetical-protein
MKKILSIFCLSYITLFAAECNVELTKIDNQITKAKSAKKINQEKLTYLNSLKERIQSNCNNGLIDNTSLRQIKEEEKHSYEMQKITKAKDKLKAQEAKLEEKERKIKQKHQDNINKINAKKDKKK
>NZ_CP035946.1|WP_172233908.1|1700311_1701292_-|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein
MLSIKKYNNNFINSFLIYSFYTKDINKQDINKQDINTKSIKKLTINTTSINKIKNTNISKVLNTNISKVLNTNKGKYKDLNKVLNNFPYNKANNFTHNKQAYTLLELVIVIVIIAILSSVALSKIHSINSLEESARALMNDIKYAQINALSYDFYDGANNDDYKKKYFRLRFHCIANTYNAKYKKYICSKNKEIGYTIFADKAGKSSSNPDKNEIVKDYINKSLLIAAPFSGVSIDKSLFTPRANLSKSANIIKAAFYYYDNKAKIKKTSTIYFNEFGNLSSNIYDFNSIQHYYIKLSSKDDYICIKLNYIGFSKIVDKSECINFN
>NZ_CP035946.1|WP_172233910.1|1701653_1701794_-|hypothetical-protein
MLGTSMLLMSDLKELKNGKYINITLNGSTIKERDYILQYLFYKKYR
>NZ_CP035946.1|WP_172233912.1|1702000_1703518_-|MBOAT-family-protein
MLFNSNLFIFIFLPITFILYHLLNYYKQINLAKVFMIFASFIFYAYFKYSLVFILIAYILINYSFYYLLMRYKSKLLLSLGIGLNLSILGYFKYKYFIIDNINNILSLDIINPTILLPLGISFITFQQIAFLSDCYKYQRDIKTLVGGGVVGFINFSLFVSFFPQLIAGPIVHYKEMMPQFINPNNFIVRYKNIALGLLFFVIGLFKKVALADYLAPSIDATYKFVESGGVLNLIESWVLTHAYTSQLYFDFSGYCDMAIGLALFFNIKLPYNFNSPYKSLSISEFWQRWHISLGRFLKDYIYIPLGGSRVGKSRQYINLFIVFLISGIWHGAGWGFIVWGSLHGIAICIHKAYMSVFANVNLFKNRLNYKLYKVIMWIITFEFINITWVFFRATSINDALSVVKSMFLLHGQIVLSPNMQRLFKDNSLFSFGKWGDHFTIGQSTMLNVVLLMMVFVLVFRASQINIYQKFILKDRYFIFIGLILLWSILQINVTPYTKFIYFNF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP035946_1	1.16\|141050\|35\|NZ_CP035946\|PILER-CR,CRISPRCasFinder,CRT	141050-141084	35	NZ_CP035946.1	1364805-1364839	0	1.0
NZ_CP035946_1	1.21\|141413\|37\|NZ_CP035946\|PILER-CR,CRISPRCasFinder,CRT	141413-141449	37	NZ_CP035946.1	632618-632654	0	1.0

1. spacer 1.16|141050|35|NZ_CP035946|PILER-CR,CRISPRCasFinder,CRT matches to position: 1364805-1364839, mismatch: 0, identity: 1.0

aaagctattggtggtggcattcctaatcctataaa	CRISPR spacer
aaagctattggtggtggcattcctaatcctataaa	Protospacer
***********************************

2. spacer 1.21|141413|37|NZ_CP035946|PILER-CR,CRISPRCasFinder,CRT matches to position: 632618-632654, mismatch: 0, identity: 1.0

attaaaactccgcattcaagaccagcgtgaatgcttg	CRISPR spacer
attaaaactccgcattcaagaccagcgtgaatgcttg	Protospacer
*************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP035946_2	2.9\|535050\|33\|NZ_CP035946\|PILER-CR,CRISPRCasFinder,CRT	535050-535082	33	KX119195	Helicobacter phage FrGC43A, complete genome	30250-30282	3	0.909
NZ_CP035946_2	2.9\|535050\|33\|NZ_CP035946\|PILER-CR,CRISPRCasFinder,CRT	535050-535082	33	NZ_CP013682	Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence	120603-120635	6	0.818
NZ_CP035946_2	2.9\|535050\|33\|NZ_CP035946\|PILER-CR,CRISPRCasFinder,CRT	535050-535082	33	NZ_CP013295	Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence	131319-131351	6	0.818
NZ_CP035946_2	2.9\|535050\|33\|NZ_CP035946\|PILER-CR,CRISPRCasFinder,CRT	535050-535082	33	NC_018687	Bacillus thuringiensis MC28 plasmid pMC189, complete sequence	121423-121455	7	0.788
NZ_CP035946_2	2.4\|534703\|33\|NZ_CP035946\|PILER-CR,CRISPRCasFinder,CRT	534703-534735	33	NZ_CP014128	Pantoea vagans strain FDAARGOS_160 plasmid unnamed3, complete sequence	13879-13911	8	0.758
NZ_CP035946_2	2.9\|535050\|33\|NZ_CP035946\|PILER-CR,CRISPRCasFinder,CRT	535050-535082	33	NZ_CP018746	Borreliella garinii strain CIP 103362 isolate 20047 plasmid unnamed1	27090-27122	8	0.758
NZ_CP035946_2	2.9\|535050\|33\|NZ_CP035946\|PILER-CR,CRISPRCasFinder,CRT	535050-535082	33	NZ_CP028865	Borreliella garinii strain 20047 plasmid lp36, complete sequence	9906-9938	8	0.758
NZ_CP035946_2	2.9\|535050\|33\|NZ_CP035946\|PILER-CR,CRISPRCasFinder,CRT	535050-535082	33	MH552525	Siphoviridae sp. isolate ctbc8, complete genome	5112-5144	8	0.758
NZ_CP035946_1	1.11\|140685\|36\|NZ_CP035946\|PILER-CR,CRISPRCasFinder,CRT	140685-140720	36	KR093628	Moraxella phage Mcat4, complete genome	996-1031	9	0.75
NZ_CP035946_1	1.17\|141122\|36\|NZ_CP035946\|PILER-CR,CRISPRCasFinder,CRT	141122-141157	36	NZ_CP017255	Clostridium taeniosporum strain 1/k plasmid pCt2, complete sequence	50399-50434	9	0.75
NZ_CP035946_1	1.17\|141122\|36\|NZ_CP035946\|PILER-CR,CRISPRCasFinder,CRT	141122-141157	36	MN693954	Marine virus AFVG_250M569, complete genome	911-946	9	0.75
NZ_CP035946_2	2.5\|534772\|33\|NZ_CP035946\|PILER-CR,CRISPRCasFinder,CRT	534772-534804	33	NC_024208	Lactococcus phage P118, complete genome	16066-16098	9	0.727
NZ_CP035946_2	2.5\|534772\|33\|NZ_CP035946\|PILER-CR,CRISPRCasFinder,CRT	534772-534804	33	NC_024203	Lactococcus phage P092, complete genome	16046-16078	9	0.727
NZ_CP035946_2	2.9\|535050\|33\|NZ_CP035946\|PILER-CR,CRISPRCasFinder,CRT	535050-535082	33	NZ_CP006726	Leptospira interrogans serovar Linhai str. 56609 plasmid lcp2, complete sequence	10150-10182	9	0.727
NZ_CP035946_2	2.9\|535050\|33\|NZ_CP035946\|PILER-CR,CRISPRCasFinder,CRT	535050-535082	33	NZ_CP007808	Brevibacillus laterosporus LMG 15441 plasmid pBRLA07, complete sequence	928-960	9	0.727
NZ_CP035946_2	2.9\|535050\|33\|NZ_CP035946\|PILER-CR,CRISPRCasFinder,CRT	535050-535082	33	KT962247	Cellulophaga phage phi17:2_18, complete genome	69778-69810	9	0.727
NZ_CP035946_2	2.9\|535050\|33\|NZ_CP035946\|PILER-CR,CRISPRCasFinder,CRT	535050-535082	33	KT962246	Cellulophaga phage phi4:1_18, complete genome	69325-69357	9	0.727
NZ_CP035946_2	2.9\|535050\|33\|NZ_CP035946\|PILER-CR,CRISPRCasFinder,CRT	535050-535082	33	KT962245	Cellulophaga phage phi4:1_13, complete genome	69325-69357	9	0.727
NZ_CP035946_2	2.9\|535050\|33\|NZ_CP035946\|PILER-CR,CRISPRCasFinder,CRT	535050-535082	33	KC821632	Cellulophaga phage phi4:1, complete genome	69325-69357	9	0.727
NZ_CP035946_2	2.9\|535050\|33\|NZ_CP035946\|PILER-CR,CRISPRCasFinder,CRT	535050-535082	33	NC_021798	Cellulophaga phage phi17:2, complete genome	69778-69810	9	0.727
NZ_CP035946_2	2.10\|535119\|31\|NZ_CP035946\|PILER-CR,CRISPRCasFinder,CRT	535119-535149	31	NC_023287	Exiguobacterium sp. S3-2 plasmid pMC1, complete sequence	51759-51789	9	0.71
NZ_CP035946_1	1.8\|140469\|35\|NZ_CP035946\|PILER-CR,CRISPRCasFinder,CRT	140469-140503	35	NZ_CP030934	Enterococcus gilvus strain CR1 plasmid pCR1B, complete sequence	47515-47549	10	0.714
NZ_CP035946_2	2.8\|534982\|32\|NZ_CP035946\|PILER-CR,CRISPRCasFinder,CRT	534982-535013	32	NC_048170	Escherichia phage vB_EcoM_Goslar, complete genome	47605-47636	10	0.688
NZ_CP035946_1	1.16\|141050\|35\|NZ_CP035946\|PILER-CR,CRISPRCasFinder,CRT	141050-141084	35	MW147367	Synechococcus phage S-H9-2, complete genome	135465-135499	11	0.686

1. spacer 2.9|535050|33|NZ_CP035946|PILER-CR,CRISPRCasFinder,CRT matches to KX119195 (Helicobacter phage FrGC43A, complete genome) position: , mismatch: 3, identity: 0.909

-aacattatttctttttttatgaaatcttttttt	CRISPR spacer
aaacatt-tttcattttttataaaatcttttttt	Protospacer
 ****** **** ********.************

2. spacer 2.9|535050|33|NZ_CP035946|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013682 (Clostridium botulinum strain 1169 plasmid pRSJ8_1, complete sequence) position: , mismatch: 6, identity: 0.818

aacattatttctttttttatgaaatcttttttt	CRISPR spacer
gagcttatttctttttttataaaatctctttct	Protospacer
.*  ****************.******.***.*

3. spacer 2.9|535050|33|NZ_CP035946|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013295 (Clostridium botulinum strain CDC_54064 plasmid pNPD1_1, complete sequence) position: , mismatch: 6, identity: 0.818

aacattatttctttttttatgaaatcttttttt	CRISPR spacer
gagcttatttctttttttataaaatctctttct	Protospacer
.*  ****************.******.***.*

4. spacer 2.9|535050|33|NZ_CP035946|PILER-CR,CRISPRCasFinder,CRT matches to NC_018687 (Bacillus thuringiensis MC28 plasmid pMC189, complete sequence) position: , mismatch: 7, identity: 0.788

aacattatttctttttttatgaaatcttttttt	CRISPR spacer
gatgctatttctttttttatgatatctttagtt	Protospacer
.*...***************** ******  **

5. spacer 2.4|534703|33|NZ_CP035946|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014128 (Pantoea vagans strain FDAARGOS_160 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.758

----tcataacctaaactattaaaataaaaatcagag	CRISPR spacer
cacactata----aaactatcaaaataaaaatcaaag	Protospacer
    ..***    *******.*************.**

6. spacer 2.9|535050|33|NZ_CP035946|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018746 (Borreliella garinii strain CIP 103362 isolate 20047 plasmid unnamed1) position: , mismatch: 8, identity: 0.758

aacattatttctttttttatgaaatcttttttt	CRISPR spacer
tatgtttattatttttttatgtaatcttttttc	Protospacer
 *..**  ** ********** **********.

7. spacer 2.9|535050|33|NZ_CP035946|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028865 (Borreliella garinii strain 20047 plasmid lp36, complete sequence) position: , mismatch: 8, identity: 0.758

aacattatttctttttttatgaaatcttttttt	CRISPR spacer
tatgtttattatttttttatgtaatcttttttc	Protospacer
 *..**  ** ********** **********.

8. spacer 2.9|535050|33|NZ_CP035946|PILER-CR,CRISPRCasFinder,CRT matches to MH552525 (Siphoviridae sp. isolate ctbc8, complete genome) position: , mismatch: 8, identity: 0.758

aacattatttctttttttatgaaatcttttttt	CRISPR spacer
tatttttattctttttttataaaatatttttta	Protospacer
 *. **  ************.**** ******

9. spacer 1.11|140685|36|NZ_CP035946|PILER-CR,CRISPRCasFinder,CRT matches to KR093628 (Moraxella phage Mcat4, complete genome) position: , mismatch: 9, identity: 0.75

gttttcttttaaaaattttggtaagctttttttgta	CRISPR spacer
tatagatttttaaaattttggcaagcttttttttga	Protospacer
  *   **** **********.***********  *

10. spacer 1.17|141122|36|NZ_CP035946|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017255 (Clostridium taeniosporum strain 1/k plasmid pCt2, complete sequence) position: , mismatch: 9, identity: 0.75

agctattaataaacaaattaatattaaaaaagatat	CRISPR spacer
tgtaaaagataaagaaagtaatattaaaaaagataa	Protospacer
 *. *  .***** *** *****************

11. spacer 1.17|141122|36|NZ_CP035946|PILER-CR,CRISPRCasFinder,CRT matches to MN693954 (Marine virus AFVG_250M569, complete genome) position: , mismatch: 9, identity: 0.75

agctattaataaacaaattaatattaaaaaagatat	CRISPR spacer
cataaatgataaattaattaatattaaaaaagatgt	Protospacer
 .. * *.*****. *******************.*

12. spacer 2.5|534772|33|NZ_CP035946|PILER-CR,CRISPRCasFinder,CRT matches to NC_024208 (Lactococcus phage P118, complete genome) position: , mismatch: 9, identity: 0.727

aaaaaatatttggaattcattttttacatttac	CRISPR spacer
tgctaatatttggaattcaattgttacattctt	Protospacer
 .  *************** ** *******. .

13. spacer 2.5|534772|33|NZ_CP035946|PILER-CR,CRISPRCasFinder,CRT matches to NC_024203 (Lactococcus phage P092, complete genome) position: , mismatch: 9, identity: 0.727

aaaaaatatttggaattcattttttacatttac	CRISPR spacer
tgctaatatttggaattcaattgttacattctt	Protospacer
 .  *************** ** *******. .

14. spacer 2.9|535050|33|NZ_CP035946|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006726 (Leptospira interrogans serovar Linhai str. 56609 plasmid lcp2, complete sequence) position: , mismatch: 9, identity: 0.727

aacattatttctttttttatgaaatcttttttt	CRISPR spacer
tttttcttttcgttttttattaaatcttttttc	Protospacer
  . *. **** ******** ***********.

15. spacer 2.9|535050|33|NZ_CP035946|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007808 (Brevibacillus laterosporus LMG 15441 plasmid pBRLA07, complete sequence) position: , mismatch: 9, identity: 0.727

aacattatttctttttttatgaaatcttttttt	CRISPR spacer
gtctttttttgtttttttatgaaatcttataag	Protospacer
. * ** *** ***************** *

16. spacer 2.9|535050|33|NZ_CP035946|PILER-CR,CRISPRCasFinder,CRT matches to KT962247 (Cellulophaga phage phi17:2_18, complete genome) position: , mismatch: 9, identity: 0.727

aacattatttctttttttatgaaatcttttttt	CRISPR spacer
tgaagcttatctgtttttatgaaatcttttgtt	Protospacer
 . * . * *** ***************** **

17. spacer 2.9|535050|33|NZ_CP035946|PILER-CR,CRISPRCasFinder,CRT matches to KT962246 (Cellulophaga phage phi4:1_18, complete genome) position: , mismatch: 9, identity: 0.727

aacattatttctttttttatgaaatcttttttt	CRISPR spacer
tgaagcttatctgtttttatgaaatcttttgtt	Protospacer
 . * . * *** ***************** **

18. spacer 2.9|535050|33|NZ_CP035946|PILER-CR,CRISPRCasFinder,CRT matches to KT962245 (Cellulophaga phage phi4:1_13, complete genome) position: , mismatch: 9, identity: 0.727

aacattatttctttttttatgaaatcttttttt	CRISPR spacer
tgaagcttatctgtttttatgaaatcttttgtt	Protospacer
 . * . * *** ***************** **

19. spacer 2.9|535050|33|NZ_CP035946|PILER-CR,CRISPRCasFinder,CRT matches to KC821632 (Cellulophaga phage phi4:1, complete genome) position: , mismatch: 9, identity: 0.727

aacattatttctttttttatgaaatcttttttt	CRISPR spacer
tgaagcttatctgtttttatgaaatcttttgtt	Protospacer
 . * . * *** ***************** **

20. spacer 2.9|535050|33|NZ_CP035946|PILER-CR,CRISPRCasFinder,CRT matches to NC_021798 (Cellulophaga phage phi17:2, complete genome) position: , mismatch: 9, identity: 0.727

aacattatttctttttttatgaaatcttttttt	CRISPR spacer
tgaagcttatctgtttttatgaaatcttttgtt	Protospacer
 . * . * *** ***************** **

21. spacer 2.10|535119|31|NZ_CP035946|PILER-CR,CRISPRCasFinder,CRT matches to NC_023287 (Exiguobacterium sp. S3-2 plasmid pMC1, complete sequence) position: , mismatch: 9, identity: 0.71

atttatatttaaatcagctttgaaaatataa	CRISPR spacer
tagtatatacaaatcagctttgaaaaaaatt	Protospacer
   ***** .**************** *

22. spacer 1.8|140469|35|NZ_CP035946|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030934 (Enterococcus gilvus strain CR1 plasmid pCR1B, complete sequence) position: , mismatch: 10, identity: 0.714

aattcttcattagagaaatcagcatttaaagtatt	CRISPR spacer
ccttcttcattacagaaagcagcattttggataag	Protospacer
  ********** ***** ******** ...**

23. spacer 2.8|534982|32|NZ_CP035946|PILER-CR,CRISPRCasFinder,CRT matches to NC_048170 (Escherichia phage vB_EcoM_Goslar, complete genome) position: , mismatch: 10, identity: 0.688

ttatctaacactttgctgaaaagttcttgtaa	CRISPR spacer
aggttacgtactttgttgaagagttcttgtaa	Protospacer
  .*.  ..******.****.***********

24. spacer 1.16|141050|35|NZ_CP035946|PILER-CR,CRISPRCasFinder,CRT matches to MW147367 (Synechococcus phage S-H9-2, complete genome) position: , mismatch: 11, identity: 0.686

aaagctattggtggtggcattcctaatcctataaa	CRISPR spacer
ggtggaattggtggtgtcattcttaatcctaatgc	Protospacer
.. *  ********** *****.********  .

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP035946

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection