CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP053707	Arthrobacter sp. NEB 688 chromosome, complete genome	14 crisprs	csa3,WYL,DEDDh,cas4,casR,DinG,cas3	1	8	0	0

1. NZ_CP053707

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP053707_1

• CRISPR_ID: NZ_CP053707_1
• CRISPR_location: 273419-273497
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP053707_1

Consensus_repeat	Method
GCGTGCAGCAATCGACACTTTCGTCA	CRISPRCasFinder

spacers of NZ_CP053707_1

>1.1|273445|27|NZ_CP053707|CRISPRCasFinder
GTTGGTGCACGCACCACCGACCCCGGA

CRISPR arrays and Neighbor proteins around NZ_CP053707_1

CRISPR arrays

The CRISPR arrays of NZ_CP053707_1

>merge|NZ_CP053707|1|273419-273497|CRISPRCasFinder
GCGTGCAGCAATCGACACTTTCGTCAGTTGGTGCACGCACCACCGACCCCGGAGCGTGCAGGAATCGACACTTTCGTCA

>NZ_CP053707|1|1|273419-273497|CRISPRCasFinder
GCGTGCAGCAATCGACACTTTCGTCA	GTTGGTGCACGCACCACCGACCCCGGA
GCGTGCAGGAATCGACACTTTCGTCA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053707.1|WP_173026699.1|270923_271343_-|transcriptional-repressor	unknown	unknown	gnl|CDD|223806
NZ_CP053707.1|WP_173026710.1|282547_283567_+|phosphate-ABC-transporter-permease-subunit-PstC	unknown	unknown	gnl|CDD|273992
NZ_CP053707.1|WP_173026701.1|273026_273398_+|DsrE-family-protein	unknown	unknown	gnl|CDD|224955
NZ_CP053707.1|WP_173026708.1|279908_280970_+|NUDIX-hydrolase	unknown	unknown	gnl|CDD|239645
NZ_CP053707.1|WP_173026696.1|267781_268156_-|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl|CDD|238045
NZ_CP053707.1|WP_173026694.1|265443_265869_-|D-tyrosyl-tRNA(Tyr)-deacylase	unknown	unknown	gnl|CDD|235383
NZ_CP053707.1|WP_173026705.1|275529_276411_+|mycothiol-synthase	unknown	unknown	gnl|CDD|132489
NZ_CP053707.1|WP_173026698.1|268959_269820_-|3-keto-5-aminohexanoate-cleavage-protein	unknown	unknown	gnl|CDD|377562
NZ_CP053707.1|WP_173026700.1|272504_273014_-|FABP-family-protein	unknown	unknown	gnl|CDD|378046
NZ_CP053707.1|WP_173026703.1|274505_274799_-|MoaD/ThiS-family-protein	unknown	unknown	gnl|CDD|340452
NZ_CP053707.1|WP_173026711.1|283563_284490_+|phosphate-ABC-transporter-permease-PstA	unknown	unknown	gnl|CDD|223654
NZ_CP053707.1|WP_173026695.1|266993_267698_-|hypothetical-protein	unknown	unknown	gnl|CDD|173412
NZ_CP053707.1|WP_173026707.1|277701_280014_+|RNA-degradosome-polyphosphate-kinase	unknown	unknown	gnl|CDD|235469
NZ_CP053707.1|WP_173026697.1|268301_268799_-|DUF4395-domain-containing-protein	unknown	unknown	gnl|CDD|379566
NZ_CP053707.1|WP_173029929.1|265865_266846_-|asparaginase	unknown	unknown	gnl|CDD|377601
NZ_CP053707.1|WP_173029930.1|271422_272469_+|LCP-family-protein	unknown	unknown	gnl|CDD|224235
NZ_CP053707.1|WP_173026709.1|281312_282437_+|phosphate-ABC-transporter-substrate-binding-protein-PstS	unknown	unknown	gnl|CDD|273374
NZ_CP053707.1|WP_173026706.1|276554_277649_+|oxidoreductase	unknown	unknown	gnl|CDD|226855
NZ_CP053707.1|WP_173026704.1|274820_275528_+|response-regulator-transcription-factor	unknown	unknown	gnl|CDD|223816
NZ_CP053707.1|WP_173026702.1|273514_274489_-|hypothetical-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP053707.1|WP_173026699.1|270923_271343_-|transcriptional-repressor	gnl|CDD|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	5.21462e-25
NZ_CP053707.1|WP_173026710.1|282547_283567_+|phosphate-ABC-transporter-permease-subunit-PstC	gnl|CDD|273992	TIGR02138, phosphate_transport_system_permease_protein_PstC, phosphate ABC transporter, permease protein PstC. The typical operon for the high affinity inorganic phosphate ABC transporter encodes an ATP-binding protein, a phosphate-binding protein, and two permease proteins. This family consists of one of the two permease proteins, PstC, which is homologous to PstA (TIGR00974). In the model bacterium Escherichia coli, this transport system is induced when the concentration of extrallular inorganic phosphate is low. A constitutive, lower affinity transporter operates otherwise. [Transport and binding proteins, Anions].	3.42344e-79
NZ_CP053707.1|WP_173026701.1|273026_273398_+|DsrE-family-protein	gnl|CDD|224955	COG2044, COG2044, Predicted peroxiredoxins [General function prediction only].	1.3719e-13
NZ_CP053707.1|WP_173026708.1|279908_280970_+|NUDIX-hydrolase	gnl|CDD|239645	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.	5.169e-38
NZ_CP053707.1|WP_173026696.1|267781_268156_-|helix-turn-helix-transcriptional-regulator	gnl|CDD|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.26417e-13
NZ_CP053707.1|WP_173026694.1|265443_265869_-|D-tyrosyl-tRNA(Tyr)-deacylase	gnl|CDD|235383	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional.	6.27383e-81
NZ_CP053707.1|WP_173026705.1|275529_276411_+|mycothiol-synthase	gnl|CDD|132489	TIGR03448, mycothiol_MshD, mycothiol synthase. Members of this family are MshD, the acetyltransferase that catalyzes the final step of mycothiol biosynthesis in various members of the Actinomyctes, Mycothiol replaces glutathione in these species. [Biosynthesis of cofactors, prosthetic groups, and carriers, Glutathione and analogs].	5.06428e-93
NZ_CP053707.1|WP_173026698.1|268959_269820_-|3-keto-5-aminohexanoate-cleavage-protein	gnl|CDD|377562	pfam05853, BKACE, beta-keto acid cleavage enzyme. BKACE, beta-keto acid cleavage enzyme plays, a role in lysine degradation. In certain instances it catalyzes the conversion of 3-keto-5-aminohexanoate and acetyl-CoA into acetoacetate and 3-aminobutyryl-CoA. The family is found to have at least 14 slightly different potential new enzymatic activities, all of which can therefore be designated as beta-keto acid cleavage enzymes.	3.78715e-104
NZ_CP053707.1|WP_173026700.1|272504_273014_-|FABP-family-protein	gnl|CDD|378046	pfam08768, DUF1794, Domain of unknown function (DUF1794). This domain forms a beta barrel structure but the function is unknown. The GO annotation for this protein indicates that the protein has a function in nematode larval development and has a positive regulation on growth rate.	2.79015e-67
NZ_CP053707.1|WP_173026711.1|283563_284490_+|phosphate-ABC-transporter-permease-PstA	gnl|CDD|223654	COG0581, PstA, ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism].	1.01506e-82
NZ_CP053707.1|WP_173026695.1|266993_267698_-|hypothetical-protein	gnl|CDD|173412	PTZ00121, PTZ00121, MAEBL; Provisional.	0.000212951
NZ_CP053707.1|WP_173026704.1|274820_275528_+|response-regulator-transcription-factor	gnl|CDD|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	5.63244e-42
NZ_CP053707.1|WP_173026707.1|277701_280014_+|RNA-degradosome-polyphosphate-kinase	gnl|CDD|235469	PRK05443, PRK05443, polyphosphate kinase; Provisional.	0
NZ_CP053707.1|WP_173026697.1|268301_268799_-|DUF4395-domain-containing-protein	gnl|CDD|379566	pfam14340, DUF4395, Domain of unknown function (DUF4395). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 142 and 168 amino acids in length. There are two completely conserved C residues that may be functionally important.	9.23837e-32
NZ_CP053707.1|WP_173026703.1|274505_274799_-|MoaD/ThiS-family-protein	gnl|CDD|340452	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins. MoaD, also termed molybdopterin synthase sulfur carrier subunit, or MPT synthase subunit 1, or MPT synthase small subunit, or molybdopterin-converting factor small subunit, or molybdopterin-converting factor subunit 1, is a conserved small sulfur carrier protein that has beta-grasp ubiquitin-like (Ubl) fold involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. MoaD is activated in an ATP-dependent manner by sulfurtransferases similar to the activation mechanism of ubiquitin-activating enzyme E1.	3.99811e-13
NZ_CP053707.1|WP_173029930.1|271422_272469_+|LCP-family-protein	gnl|CDD|224235	COG1316, LytR, Transcriptional regulator [Transcription].	9.85527e-53
NZ_CP053707.1|WP_173026709.1|281312_282437_+|phosphate-ABC-transporter-substrate-binding-protein-PstS	gnl|CDD|273374	TIGR00975, precursor_PBP-3_PstS-3_Antigen_Ag88., phosphate ABC transporter, phosphate-binding protein. This family represents one type of (periplasmic, in Gram-negative bacteria) phosphate-binding protein found in phosphate ABC (ATP-binding cassette) transporters. This protein is accompanied, generally in the same operon, by an ATP binding protein and (usually) two permease proteins. [Transport and binding proteins, Anions].	7.34205e-82
NZ_CP053707.1|WP_173026706.1|276554_277649_+|oxidoreductase	gnl|CDD|226855	COG4447, COG4447, Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only].	1.84641e-10
NZ_CP053707.1|WP_173029929.1|265865_266846_-|asparaginase	gnl|CDD|377601	pfam06089, Asparaginase_II, L-asparaginase II. This family consists of several bacterial L-asparaginase II proteins. L-asparaginase (EC:3.5.1.1) catalyzes the hydrolysis of L-asparagine to L-aspartate and ammonium. Rhizobium etli possesses two asparaginases: asparaginase I, which is thermostable and constitutive, and asparaginase II, which is thermolabile, induced by asparagine and repressed by the carbon source.	1.16847e-128

Protein sequences

>NZ_CP053707.1|WP_173026701.1|273026_273398_+|DsrE-family-protein
MDDAASTLVVKVTCGPEAPERLAQGLTVAATALASGLEVSLWLTGDAAWMAVPGRAEAVDLPHSAPLAELRDAVLEGGRVTVCGQCAARRDLTVDDLLPGATIRGAAAFVEEVVAPATRALVY
>NZ_CP053707.1|WP_173026700.1|272504_273014_-|FABP-family-protein
MVFTLDTTLHEDLAPLAWLVGTWAGAGLVGYPTIESQRFGQEVVCSHDGRRFLRWESRTWLLDDEGNQVRPLATETGFWRPVTEASDGTNVELLLAHPTGFVEMYAGVAEPAKVELRTDGVMRSPDAKEYTAAHRLYGYVNSNLMWVMDMAAVGKPLQSHVSAELKRVE
>NZ_CP053707.1|WP_173029930.1|271422_272469_+|LCP-family-protein
MLGFGDDRPERPDDAPDEGGQRPPRRRLRRVLTVVGVLVLLVALAVGGFVGYLGWRVSDNVTQADLLPTAPPPTVASDGTPITIGRDKGTNFLLIGSDSRGADRGRADVIVLVHVPKDPTSIQMVHFPRDLFVDIPGHGKNKINAAYAFGGEPLLVETLQDLVGIKIDHVARTDFEGFKNMTDAVGGVRVYAEEGNDANGNGGKAIQKGWNTLDGEQALAFVRERYELSEGDISRGKRQLAFVKALLLKATSGETVRNPLAVARFADAATKNLVVDRDLSIGTMKDYALELRGIRASDVVFATAPFSGFGTDPNAGSIDIVDEQGMALLGKALRADRMDDYLDVYVAP
>NZ_CP053707.1|WP_173026699.1|270923_271343_-|transcriptional-repressor
MSDLGERLRARGKRLTTQRERVLAAVGRLGHATPDEVADAVATDGGGAVPVSTVYRSLDALQELGLIAHTHVDHRSPSYHLAEHATHLHLVCRGCGWVGELPLDVADELVARVDDRLGFAADVGHAAVHGLCRTCREDP
>NZ_CP053707.1|WP_173026698.1|268959_269820_-|3-keto-5-aminohexanoate-cleavage-protein
MTTPSAGVTGTLITVAPTGAEHAKADLPQLPTTLEEVVETAQRCEAAGASLVHLHIRDAEHRPTLDGGYLRAAVDALREATDLVVQLSTGGSVHDPLEQRLTVLDAEPDSCSLTCGTTNFGDDVFLNPWGFMSDLYVQAQEREVVPEFELFDLGHVHALARLLDTHGLPFGGRVHVDFVTGVPGGMPATTAALMAGVAMLPPEVTSWSATGIGRGHLPVMAAALSAGGHLRVGMEDNVVYRRGQVVQHNDELVARAAELAATMQRPALTSEQARELLGIKDRRPTR
>NZ_CP053707.1|WP_173026697.1|268301_268799_-|DUF4395-domain-containing-protein
MRSLIGFPAVVNEKAARAVAAQVVLVAVVALATGWLWLTAVLAVGFALRVAAGPRFDPFGRLATQVVAPRLGEPRMVSGAPKRFAQGIGLAFTAAGTLALALGAPVVTVVLLSVLTLFAALEAFVGFCAGCFAFAQLMRLGVVSDDTCVECADISLRRRHEAAAA
>NZ_CP053707.1|WP_173026696.1|267781_268156_-|helix-turn-helix-transcriptional-regulator
MSKNPLNDLGESLGEYLREQRRSARLSLRQLSELAGVSNPYLSQIERGLKRPSAEILQQLAKGLEVSAESLYVRAGILDAEHAASPDDAPDVRRALAEDPRLTPRQKKTLLDIYESYVEDDARP
>NZ_CP053707.1|WP_173026695.1|266993_267698_-|hypothetical-protein
MAVKDDLRKTVDTTPLYALAGATDLAVEKVREAQKRADARRAEMTKRVEAARADLAPAAIQARVTTVAGQVKDLPALAVNQGLVVGGKVSEGYDDLVLRGKDIVARIRRQQATKDLVAQAETTVAQAKGAVTTARKAAAEVERSAKATVTVGRKEAAKATDVVTETVEQDAKVAETEVTAAAKRTRTAAKRTSTTTKKAAKKTTSSAKAATTSARKTVKAVEKAVEAGAAKVGD
>NZ_CP053707.1|WP_173029929.1|265865_266846_-|asparaginase
MPTPPALADAPVLAHVVRGGVVESAHRASVAVTAPDGSLEQAWGAADDPVFPRSSNKPVQAVAMLRAGLELPPPHLALASASHSGEAFHLDGVRAMLEGAGLTEADLQNTPDLPYDPQERDAWLAAGRAASPLAQNCSGKHAGMLAACRAAGWDPTTYLDPQHPLQRLMDATLADLAGEPVAATAVDGCGAPVMAVSLAGLARAFGRVAAADPGTDEGRVAEAVRAHPEMLGGTRRDVTALIRGTAGVVAKDGAESVYAVGLPDGRGIALKVADGGQRARPVILAAVLRRLGVASDAYARLEDAPVLGHGAPVGAVVAVGLDAGRA
>NZ_CP053707.1|WP_173026694.1|265443_265869_-|D-tyrosyl-tRNA(Tyr)-deacylase
MRTVLQRVTRAAVRVEGEVVGAIDRPGLVALVGATHDDGPEQVATLARKIAELRILHDERSVLDEGAPVLVVSQFTLYADTRKGRRPSWNAAAPGPVAEPLVEAVVAELRERGVEVATGRFGAHMEVELVGDGPVTILLDV
>NZ_CP053707.1|WP_173026702.1|273514_274489_-|hypothetical-protein
MDEHPDGAGAEASDAPVGADGASGDGAPGVTALDTVPADAPVDGASGDGASAVETRASRRARLESLRRHPVLPEMATVVRPLVVAVTLVLGALLVLALRTDAVVLAAGLAWTGLVVAWGWPRLLGSSSRFGASLAVGVAGVLAPAAGAATSDEPWLRLVPVALAVALGVMFVHQIVRRDGRPRLTESIGITAFGLGLVAVGTTWLPLARSPRPTDLATAALVAVAVGSLADLAAGVRVLRGWLLPLSMLLGGAGALVTASVLGGPGAGTAALVGVLCSAVAHALRRTLVVLPPVTAVRCQLATGAASLLVPGVVAYGISLWLVG
>NZ_CP053707.1|WP_173026703.1|274505_274799_-|MoaD/ThiS-family-protein
MDVRHGATASDGTDASAGAVVTVRYWAGARAAAGVDGESVPAPPTVGGLIAALAQARPGLAAVLPVCSVLVDGLAASGDDPLPPGATVEVLPPFAGG
>NZ_CP053707.1|WP_173026704.1|274820_275528_+|response-regulator-transcription-factor
MAHLLLLTNTLAPAAEVLPALGLLSHHVRILPAEASALVDAPDADGVLVDARRELAMARSLCRVLTTTGVSGPLFAVVTEGGLAGLTSEWGLDDVLLDTAGPAEVEARLRLALGRRAETADDEAGPITAGALVIDEATYSVRLRGRLLDLTYKEFELLKYLAQHPGRVYTRSQLLQEVWGYDYFGGTRTVDVHVRRLRAKLGTEHELLIGTVRNVGYRFVPEAAGVDGELEEVEG
>NZ_CP053707.1|WP_173026705.1|275529_276411_+|mycothiol-synthase
MGDTIHLEAVDGDLAAALRGLWARAEEADGVGAVSEAFRLAVGPARDGVVHLVRREGDEVVGYAQVASAGTPDAVAELVVDAAHRRAGHGCALLDAALAEDTRSVWAHGDLPAARSLAASAGLERTRELFRMARPLTADDATDPVLPEGCTARAFEPGRDDEDWVALNAAAFAHHPEQGRLTVADLRERMEQDWFDPEGFILVERDGRVVAFHWTKVEPGSRSGEVYVVGVDPAEQGHGLGGPLTRLGTAHLARRGLAEVELYVDGDNTAARRTYARLGFEDAAVDVQYTVPR
>NZ_CP053707.1|WP_173026706.1|276554_277649_+|oxidoreductase
MRRSLPAALVSVAALAASLVAAAPAHAAGADRHHAPRLATSTRVVDADQSFRGLDAVDRRTAWVAGGSVSGGPGGVWRTHDGGRHWTDVSPPQTEGLNFRDVEVTGRGTVTVLAIGEGEASRIYRTRDDGRTWTETFRSTEPAAFYNCLAFFPGGRTGLAVSDPVDGRFRIARTTDGGRSWRVLPSTGMPDSTGEANFSASGECLTVSGRDAWFGSGGERSRVFRSGDLGRTWTATDSRIPAGEAAGVFGIAVRPGVGGLAVGGDFSAPDDGADATSVSRDGRRWASAGDLEHLGEDVAWLPGVRRGAVTVGESGEVGGVSVTLDAGRSWYRLSDTGFHTVDCTTDGSCWAAGGKGRVARVSIG
>NZ_CP053707.1|WP_173026707.1|277701_280014_+|RNA-degradosome-polyphosphate-kinase
MTDETAVDVEEQGGTARDAAADASAEGAIVSEVSIASASATETRQQPRSANGRFVRGAHHAEPEDDEGLPADRFLDREISWLQFNERVLQLAADDNVPLLERARYLAIFASNLDEFFMVRVAGLKRRIATGIAVRSASGLEPREVLEQISLVAHELMTMQARVYAEQVRPALESEGVTIVHWDALSDDERERLGGVFTSRLFPVLTPLAVDPAHPFPYISGLSLNLAVILVNPRTGKEHFARVKVPPMLPRLVRVEPGPDESPLADMYDTRFVPLEDVIAAHLDQLFPGMEIREHFTFRVTRNEDLEVEEDDNENLLTALERELTRRRFGPPVRLEVEEDIDDHVLDLIVRELGVNGTEVYRLPAPLDLRALNVIADLERSELHFEPFVPRTNADLAPTESAKARDIFASIRKQDVLLQHPYDSFSTSVQALLEQAASDPKVLAIKQTLYRTSGDSPIIDALIDAAEAGKQVLAVVEIKARFDEENNISWARKLEHAGVHVVYGIVGLKTHAKLCLVIRQEAEGMRRYCHVGTGNYNPKTARLYEDLGLLTDDEQVGEDLSRLFNQLSGIAPRSKFRRLLVAPRSVRSGLVAHIHQEIEHERAEPGSGYIGLKVNSIVDEQIIDALYRASQAGVRVQLWVRGICALRPGVPGLSESIEVRSVLGRFLEHSRIFFFGGGGDPLVYIGSADMMHRNLDRRVEALVRLTDPRHIDDLRSLMERGAAEKYSHWALGPDGRWTRHHLDEEGQPLEDLQSALVEMHAKRRRKARRR
>NZ_CP053707.1|WP_173026708.1|279908_280970_+|NUDIX-hydrolase
MDAPPPRRGGPAARGPAVGARRDARQAPPQGPAPLIGAAVPTTIPAAGTLPWRVRGHALQVALVHRPRYDDWAWAKGKLDAGEEWAPAAARETEEETGLRVRLGVPLPEARYTMLDKDGRPADKVVRYWAARVVGGSGELVNEIDDVAWLDPREAHDRLDYARDREQLRALVRHHQAGSLDTWPLVVVRHARAVARGAWSGGDDTLRPLDAAGVTRASALVGVLAAYAPRRVVSSPSVRCVATVAPFADSAGLGVRTRGGLSEEGFEEDPTKAPRRVLRLLEAGRPTVLCSHGPVLPAVLEVLAPLAADASAADRALLLAAADAKLVKGEALVLHVAGTGAAARVVAVERHLP
>NZ_CP053707.1|WP_173026709.1|281312_282437_+|phosphate-ABC-transporter-substrate-binding-protein-PstS
MKTLRFGQLASIALVGSIALAGCGSDNNAGTGATAGSGSSGSAATADCFDGTLNAEGSSAQKNAFDEAAASYKAACTGAQVNYNPTGSGAGIKQMIAGQVDFAGSDSALKTEEKDGIVESDAAAQTCGSPAWNLPMVTGPIAIAFNVKGVDSLTLTPAVAADIFAGKITTWNDPKIAAVNSGVTLPSTAIKVFFRSDESGTTENFTKYLSAASDGGWTAEPAKKWTGTGEGKEKSAGVAEGVKSTDGGITYVEWSYAKDNDLGVAKVDNGAGAVELTGETVGKAVEAAQPDGEGNDLRLKLDYATQEAGAYPILLVTYEIVCSKNKDAEKGKNIKSFLKHFASADVQKSLEEIGYAPLPSSVQTKVEAAIEALS
>NZ_CP053707.1|WP_173026710.1|282547_283567_+|phosphate-ABC-transporter-permease-subunit-PstC
MSTSITGRSAADELPGPDGRPPLHGDGAGTGRLGDRLFGGAATASGVFVIALVTLVGVFLVAQAVPALQANQANFLTSREWSTAGANPRFGIVDLLWATVVTSVIAMAIAVPLGVAIALFITQYAPAWLSRPAAATIDLLAAVPSIVFGFWGLTIAGQYFEPVASVIDGALGWIPFFAESEDGPSAKSTLAFAGVILAIMVLPIVTAISREVFAQVPTPHKEGALALGATQWEMIRTAVLPFGKPGVISAAMLGLGRALGETLAVTILLSALNEGSAFSSSIFNGGATFASKIALGIQEANSATSTGALVAAGLVLFVLTFVVNAIARLIIERRKAFTE
>NZ_CP053707.1|WP_173026711.1|283563_284490_+|phosphate-ABC-transporter-permease-PstA
MSTIELEAGRRGGSPAPAAPPALGPKSGSRALRDNLARIVMWSAFALGVIPLVWILVSTALKGGSMLLESQWWTNSQSGITDRRVGGGAVHAIQGTLIQAAVTAAISVPVGIMTAVYLVEYGRGRLARTVSFMVDILTGIPSIVAALFVYALWVTTFGFQRVAFAVCLALVLLMIPTIVRSTEEMLKLVPNELREASYALGVPKWKTIFKVVLPTAFSGIVTGVLLGIARVMGETAPLLVLGPYTPVIVTDLFATNMATLPTMINQSRSENLQPALDRVWGAALTLILLIFLLNLLGRFVGRFSKVKS

Crispr_ID: NZ_CP053707_2

• CRISPR_ID: NZ_CP053707_2
• CRISPR_location: 382462-382628
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 3 spacers

Consensus repeat of NZ_CP053707_2

Consensus_repeat	Method
AATCGACGAAAGCGACGATTG	CRT

spacers of NZ_CP053707_2

>2.1|382483|31|NZ_CP053707|CRT
ATGCACACCCCGCCCCGCCCGACCGTGCAGA
>2.2|382535|21|NZ_CP053707|CRT
GTGCACGCCCGACCGTGCACC
>2.3|382577|31|NZ_CP053707|CRT
CTGCACACTCCGCCCCGCCCGACCGTGCACA

CRISPR arrays and Neighbor proteins around NZ_CP053707_2

CRISPR arrays

The CRISPR arrays of NZ_CP053707_2

>merge|NZ_CP053707|2|382462-382628|CRT
AATCGACGAAAGCGACGATCGATGCACACCCCGCCCCGCCCGACCGTGCAGAGATCGACGAAAGCGACGATTGGTGCACGCCCGACCGTGCACCAATCGACGAAAGCGACGATTGCTGCACACTCCGCCCCGCCCGACCGTGCACAAATCGACGAAAGCGTCAGTTT

>NZ_CP053707|2|1|382462-382628|CRT
AATCGACGAAAGCGACGATCG	ATGCACACCCCGCCCCGCCCGACCGTGCAGA
GATCGACGAAAGCGACGATTG	GTGCACGCCCGACCGTGCACC
AATCGACGAAAGCGACGATTG	CTGCACACTCCGCCCCGCCCGACCGTGCACA
AATCGACGAAAGCGTCAGTTT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053707.1|WP_173026788.1|374810_375497_-|response-regulator-transcription-factor	unknown	unknown	gnl|CDD|223816
NZ_CP053707.1|WP_173026803.1|391940_393131_+|endonuclease	unknown	unknown	gnl|CDD|367881
NZ_CP053707.1|WP_173026793.1|382278_382374_-|potassium-transporting-ATPase-subunit-F	unknown	unknown	unknown
NZ_CP053707.1|WP_173026798.1|387301_387700_-|VOC-family-protein	unknown	unknown	gnl|CDD|366361
NZ_CP053707.1|WP_173026800.1|389137_389320_+|DUF3073-domain-containing-protein	unknown	unknown	gnl|CDD|378620
NZ_CP053707.1|WP_173026789.1|375493_377995_-|sensor-histidine-kinase-KdpD	unknown	unknown	gnl|CDD|225115
NZ_CP053707.1|WP_173026799.1|387861_388953_+|Glu/Leu/Phe/Val-dehydrogenase	unknown	unknown	gnl|CDD|223411
NZ_CP053707.1|WP_173026801.1|389421_390966_+|cytosine-permease	unknown	unknown	gnl|CDD|271377
NZ_CP053707.1|WP_173026792.1|380618_382265_-|potassium-transporting-ATPase-subunit-KdpA	unknown	unknown	gnl|CDD|377138
NZ_CP053707.1|WP_173026790.1|378005_378575_-|potassium-transporting-ATPase-subunit-KdpC	unknown	unknown	gnl|CDD|376890
NZ_CP053707.1|WP_173026785.1|370104_370566_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP053707.1|WP_173026795.1|383476_384658_+|lipase	unknown	unknown	gnl|CDD|238881
NZ_CP053707.1|WP_173026802.1|390962_391490_+|isochorismatase-family-protein	unknown	unknown	gnl|CDD|376404
NZ_CP053707.1|WP_173026794.1|382667_383429_-|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl|CDD|235852
NZ_CP053707.1|WP_173026791.1|378585_380622_-|potassium-transporting-ATPase-subunit-KdpB	unknown	unknown	gnl|CDD|234905
NZ_CP053707.1|WP_173026787.1|372724_374518_-|BCCT-family-transporter	unknown	unknown	gnl|CDD|376718
NZ_CP053707.1|WP_173026786.1|370609_372145_-|ATP-dependent-DNA-ligase	unknown	unknown	gnl|CDD|235108
NZ_CP053707.1|WP_173029943.1|372182_372557_-|GNAT-family-N-acetyltransferase	unknown	unknown	gnl|CDD|225064
NZ_CP053707.1|WP_173026796.1|384813_385971_-|CoA-transferase	unknown	unknown	gnl|CDD|224717
NZ_CP053707.1|WP_173026797.1|385967_387005_-|glucose-6-phosphate-dehydrogenase-(coenzyme-F420)	unknown	unknown	gnl|CDD|213827

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP053707.1|WP_173026788.1|374810_375497_-|response-regulator-transcription-factor	gnl|CDD|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	7.18017e-79
NZ_CP053707.1|WP_173026803.1|391940_393131_+|endonuclease	gnl|CDD|367881	pfam04231, Endonuclease_1, Endonuclease I. Bacterial periplasmic or secreted endonuclease I (EC:3.1.21.1) E. coli endonuclease I (EndoI) is a sequence independent endonuclease located in the periplasm. It is inhibited by different RNA species. It is thought to normally generate double strand breaks in DNA, except in the presence of high salt concentrations and RNA, when it generates single strand breaks in DNA. Its biological role is unknown. Other family members are known to be extracellular. This family also includes a non-specific, Mg2+ activated ribonuclease precursor.	6.91258e-49
NZ_CP053707.1|WP_173026798.1|387301_387700_-|VOC-family-protein	gnl|CDD|366361	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.	5.52156e-13
NZ_CP053707.1|WP_173026800.1|389137_389320_+|DUF3073-domain-containing-protein	gnl|CDD|378620	pfam11273, DUF3073, Protein of unknown function (DUF3073). This family of proteins with unknown function appears to be restricted to Actinobacteria.	5.27682e-21
NZ_CP053707.1|WP_173026789.1|375493_377995_-|sensor-histidine-kinase-KdpD	gnl|CDD|225115	COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms].	0
NZ_CP053707.1|WP_173026799.1|387861_388953_+|Glu/Leu/Phe/Val-dehydrogenase	gnl|CDD|223411	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism].	8.16214e-89
NZ_CP053707.1|WP_173026801.1|389421_390966_+|cytosine-permease	gnl|CDD|271377	cd11484, SLC-NCS1sbd_CobB-like, nucleobase-cation-symport-1 (NCS1) transporter CobB-like; solute-binding domain. This NCS1 subfamily includes Escherichia coli CodB (cytosine permease), and the Saccharomyces cerevisiae transporters: Fcy21p (Purine-cytosine permease), and vitamin B6 transporter Tpn1. NCS1s are essential components of salvage pathways for nucleobases and related metabolites; their known substrates include allantoin, uracil, thiamine, and nicotinamide riboside. NCS1s belong to a superfamily which also contains the solute carrier 5 family sodium/glucose transporters (SLC5s), and solute carrier 6 family neurotransmitter transporters (SLC6s).	8.18931e-38
NZ_CP053707.1|WP_173026792.1|380618_382265_-|potassium-transporting-ATPase-subunit-KdpA	gnl|CDD|377138	pfam03814, KdpA, Potassium-transporting ATPase A subunit.	0
NZ_CP053707.1|WP_173026790.1|378005_378575_-|potassium-transporting-ATPase-subunit-KdpC	gnl|CDD|376890	pfam02669, KdpC, K+-transporting ATPase, c chain. This family consists of K+-transporting ATPase, c chain, KdpC. KdpC forms strong interactions with the KdpA subunit, serving to assemble and stabilize the Kdp complex. It has been suggested that KdpC could be one of the connecting links between the energy providing subunit KdpB and the K+-transporting subunit KdpA. The K+ transport system actively transports K+ ions via ATP hydrolysis.	1.14024e-82
NZ_CP053707.1|WP_173026795.1|383476_384658_+|lipase	gnl|CDD|238881	cd01844, SGNH_hydrolase_like_6, SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.	3.30431e-60
NZ_CP053707.1|WP_173026802.1|390962_391490_+|isochorismatase-family-protein	gnl|CDD|376404	pfam00857, Isochorismatase, Isochorismatase family. This family are hydrolase enzymes.	1.16259e-20
NZ_CP053707.1|WP_173026794.1|382667_383429_-|enoyl-CoA-hydratase/isomerase-family-protein	gnl|CDD|235852	PRK06688, PRK06688, enoyl-CoA hydratase; Provisional.	7.85331e-71
NZ_CP053707.1|WP_173026791.1|378585_380622_-|potassium-transporting-ATPase-subunit-KdpB	gnl|CDD|234905	PRK01122, PRK01122, potassium-transporting ATPase subunit KdpB.	0
NZ_CP053707.1|WP_173026787.1|372724_374518_-|BCCT-family-transporter	gnl|CDD|376718	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter.	0
NZ_CP053707.1|WP_173026786.1|370609_372145_-|ATP-dependent-DNA-ligase	gnl|CDD|235108	PRK03180, ligB, ATP-dependent DNA ligase; Reviewed.	0
NZ_CP053707.1|WP_173029943.1|372182_372557_-|GNAT-family-N-acetyltransferase	gnl|CDD|225064	COG2153, ElaA, Predicted acyltransferase [General function prediction only].	1.20043e-38
NZ_CP053707.1|WP_173026796.1|384813_385971_-|CoA-transferase	gnl|CDD|224717	COG1804, CaiB, Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion].	3.89034e-112
NZ_CP053707.1|WP_173026797.1|385967_387005_-|glucose-6-phosphate-dehydrogenase-(coenzyme-F420)	gnl|CDD|213827	TIGR03554, F420_G6P_DH, glucose-6-phosphate dehydrogenase (coenzyme-F420). This family consists of the F420-dependent glucose-6-phosphate dehydrogenase of Mycobacterium and Nocardia. It shows homology to several other F420-dependent enzymes rather than to the NAD or NADP-dependent glucose-6-phosphate dehydrogenases. [Energy metabolism, Pentose phosphate pathway].	0

Protein sequences

>NZ_CP053707.1|WP_173026793.1|382278_382374_-|potassium-transporting-ATPase-subunit-F
MGGMWEDLLAGVIGLLLLGYLLDALVRPDRY
>NZ_CP053707.1|WP_173026792.1|380618_382265_-|potassium-transporting-ATPase-subunit-KdpA
MSIALQTATAVLLVAAILAATHVPLGAWMHRAFTDERDWRVERVVYRLVGVDPRTEQRWQGYAGSVLAFAVASVALLFVLILGQGLLPWDLGRSMNWDTALNTAVSFTTNTNWQSYSGEAGAGHAVQMLGLTVQNFVSAATGIAVAIALLRGLARTHSDRLGNFWVDLTRATVRILLPIAAVAAVLLLLGGVIQNLASPHTVETLTGVQQTIQGGPVASQEAIKELGTNGGGFFNANSAHPFENPGPWTNLLEIVLILLIPFALPYTYGLMVGDRRQGAVAVGVMGTLLVGSIALATWAEAHAGAGPLGSMEGKEQRFGVVWSSLFASVTTGTSTGAVNSMHDSYSALGGGVPLVNMLLGELSPGGVGTGLYSYLVVVVLAVFIAGLMVGRTPELLGKTVGRAEITSAALVTLTMPALVLLGTGLSVVLPTALDARANDGPHGLSELMYAVASASNNNGSAFAGLSADQPYLNLLLAFCMFAGRFVPIVLVLRLAGSLAAQGRRPVTAGTMPTHTPLFTTLVVGTVIVVAGLTFFPSLALGPIAEALS
>NZ_CP053707.1|WP_173026791.1|378585_380622_-|potassium-transporting-ATPase-subunit-KdpB
MTTSLARTAWQNLPAAFAKLDPRHLWRTPVIMVVWVGSVLTTVLSVLDPSVFSIAVTVWLWATVLFANLAEAVAEGRGKAQADTLRRTRTETVARRLREDGTVEEVAGTALLLGDRVVVEAGQVIPGDGDVVEGVATVDESAITGESAPVIRESGGDRCAVTGGTTVLSDRVVVRITSKPGETFIDRMIALVEGASRQKTPNEIALSILLTTLTIIFVLAVAAIQPMAVYSGQRLSLVVLVALLVCLIPTTIGALLSAIGIAGMDRLVQRNVLAMSGRAVEAAGDVSTLLLDKTGTITFGNRRASELVPVGGASRTDLARSAYLSSLADETPEGRSIVEYTVEDGVDADALGDVVALRRAGAEVVEFSATTRMSGVDLPDGRRVRKGAGSAVTAWVREQGGTVGGDLEMHVEAISASGGTPLVVAEAAPGEAPSVVGVVHLKDVVKPGMRERFEQLRAMGIRTVMITGDNPLTAKAIAEEAGVDDYLAEATPEDKMALIKQEQSGGRLVAMTGDGTNDAPALAQADVGVAMNTGTSAAKEAGNMVDLDSDPTKLIDVVAIGKQLLITRGALTTFSIANDVAKYFAIIPAMFVGIFPGLQTLNVMGLSSPESAMLSAVIFNALVIVALIPLALKGVRYRALSAHAMLRRNLLVFGLGGVVVPFVGIKLIDLVVSLVPGL
>NZ_CP053707.1|WP_173026790.1|378005_378575_-|potassium-transporting-ATPase-subunit-KdpC
MTRQLSAALKALLVLTVLCGVLYPAAVLAVGLVVPDRAAGQPVRVDGREVGSALLGQPPSGPEWFQGRPSESDASGETSGGSNLGPSNPDLATAVAEREQALRAANPDAPQDIPADALTASASGLDPDVSPAYARWQAPRVAAARGLDPAAVLRLVGEHVRPAPLGGVLGQERVNVLELNVALSTLGRG
>NZ_CP053707.1|WP_173026789.1|375493_377995_-|sensor-histidine-kinase-KdpD
MARGRLRIYLGAAPGVGKTVAMLDEGHRRLDRGTDVVVGLVETHERAHTRALLEGLELVPRARVGHRGATLDEMDLDRLLARRPQVALVDELAHTNAPGSRNEKRWQDIEELLEAGIDVVSTVNVQHLESLNDAVTAITGVVQRETVPDAVVRAADQIELVDMSPEALRRRMAHGNVYAPEKVDAALANYFRVGNLSALRELALLWLADRVDEGIGRYRADHGIDATWPTRERVVVAISGGPEGEVLLRRAARIAARGAGGELLAVHVARSDGLAGPTLPDLVTQRRLTDELGGSFHTVTGDDLPEAVLDFARGVNASQVVIGSSRRARWRTLVSPSTTEEVITRSGDIDVHVVTHRFAHGKGRRVSRAALPRRRVRLGYALGVVGPFVLTEALVGLPEDPDLPLTVPLFLLLSVLTALLGGMGPALVGAVASSLFLNWFFTPPTGGLTISQPQNAVALLVFVLVSAAVAWVVHRSARRADRALRAQAEASALAELSHTLLGSTDQMALLLARAVEMFGAEAAALVRRGRSGAEVVAATDPSLTPDDLRREGLPRAEADDEHDLVLVGAAVPAGRQRLLAAFAAHAGAILQRRSLQASAGEAVALARDNSARTALLSAVSHDLRTPLAGIKAAIGSLRSTEVTFSPEDEAELEAAIEDSADRLDALIGNLLDMSRLQAGALVAHPRAVDLGEVVPGVVASVAEPERVEWHLDPAARVVRTDAGLLDRVLGNVVENALRHQPAPGRVRVTTSGLGGRVHIRVVDTGPGVPEGDRDRIFLPFQRHGDAPGGDGVGLGLAVARGLAEAMGGRVSAEDTPGGGLTMVVDLPSEEEAG
>NZ_CP053707.1|WP_173026788.1|374810_375497_-|response-regulator-transcription-factor
MSQRVLVVDDDPTLRRTLRINLRARGYEVEEVGTGHDALTTLADAPPDLVVLDLGLPDLDGVEVLRRIRSRSRVPVVVLSARHQSDDKVEALDEGADDYVTKPFGMDELMARVRSALRRGGEDEGLAAVGPVVTDAFTLDFATLSATRDGAPVHLTPTEWRLLAELARHRGRVVTQADLLRAVWGPGYGRESNYLRVYGNQLRRKLEADPSAPRYIVTEPGIGYRLAV
>NZ_CP053707.1|WP_173026787.1|372724_374518_-|BCCT-family-transporter
MSTDTRTTPESTPPPAVDDDTRTTVADEAPHPVLGIDVVEQTARGSSVDKVVFGVVAAIAVAFVAWGFLSTDTLSAASGAALGWSVTNMGWMFVVLASAFVAFVIWLAASRFGDIPLGTDDEEPEFRTVSWIAMMFSAGMGIGLMFYGVSEPLSHFVTPPPGTGEAGNPQAVQTAMATTLFHWTLHPWAIYAVVGIAIAYGVFRKGRSQLVSSAFIPLIGERRASGGAGRVIDMLAIFATLFGSAASLGLGALQIGSGLEIVAGIGEVGNGVLVGVIALLTVAFILSAVSGVAKGIQWLSNINMVLAIALALFVFVVGPTVFMLDLIPTAVGSYFQDLAMMSARTDAAGGDGMAAWLSGWTVFYWAWWMSWTPFVGMFIARISRGRTIRQFVTGVLLVPSLVSLVWFAIFGGAGIHAQQNGTDLAGQSTSEGQLFGLLDTMPLAGITTVVVMVLVAIFFVSGADAASIVMGTLSQRGTMEPSRWNVIFWGVATGAVAAVMLLVGGDSALTGLQNLTIVAALPFALVMVGLAWALVKDLREDPVVVRRRYAVAAVEKAVVTGATRHGDDFALTVEAADGSVLGEADSTPSEAAEVARG
>NZ_CP053707.1|WP_173029943.1|372182_372557_-|GNAT-family-N-acetyltransferase
MRLRQDVFVLEQECLYPDLDGRDLEPGAVQWWAESETGGVVATLRVLDDGGGVLRVGRVATSASARGAGVARELVLAVLAATRGPVVLDAQSHLEHWYAGLGFGRDGAEFVEDGIPHVPMRLAR
>NZ_CP053707.1|WP_173026786.1|370609_372145_-|ATP-dependent-DNA-ligase
MDVTLAGLVTTSQEVAATRSRTAKTEAIAALVARADAAEVGTVVAFLSGVLPQRRLGVGHRSLARMPEPAGEPTLTVAEVDAAFDRLAATAGAGSTASRRAELAGLLGRATADEQQFLRDLMTGNLRQGALDGVVLAALARAFEVPDAVVRRAVMLAGSTHEVAGIAATGGQPALEEVGLVVGRPLRPMLAGSAKTTDEAVEGFAGAELLVDGKLDGIRVQVHRRAGEVTVFTRSLDEITERLPEVVEAVAALPGGDLVLDGEAIVLHEDGRPAPFQVTGARTASSADVERLRAEVPLTTFLFDVLHADGRDLVDAPARERHEVLTALAPHLLVPRLVTADPDEAAAFFDRLVADGHEGVVVKDAAAPYAAGRRGSGWVKVKPTHTLDLVVLAVERGSGRRRGWLSNIHLGARDADTGELVMVGKTFKGMTDEMLRWQTERFTQLAVGPADGYVVTVRPEQVVEIALDGVQRSTRYPGGVALRFARVLRYRDDKPLDEVDTLETVRGLGAL
>NZ_CP053707.1|WP_173026785.1|370104_370566_+|hypothetical-protein
MSAVVRSSTRRPGDHRLPPRAVSVAGVAVGLGLLFLVQVRPGWRALTVLTPAAAEVVPFVVAALWTGVLAEAVALVVRTTWWRTVAGLVTSAVGLAAAVAAWDVFPVVAGSPWRTSLRAVLVVAVVSGVVGVVSSLLGPLGGRPTDTGGGRRR
>NZ_CP053707.1|WP_173026794.1|382667_383429_-|enoyl-CoA-hydratase/isomerase-family-protein
MSSARVRVEADGAIGRITLDAPERLNAVDPEMCAAVTEAVLRFDADPDVRVVALTGEGRGFCSGAPLTAEGAQMGVLDAGADLVRALVASRTPVVALVHGVAAGIGVPMALACDYVLAADEAPFVLAFSRIGLMPDGGSTALVAAAVGRARAMRLALTGEALPGRTAAEWGLVAESVPADGFAARADELLAAFAAGATLALGETKAAVNAATLDLEGALAREDAGQRALASTADHLEGAAAFVGKRRPEFRAR
>NZ_CP053707.1|WP_173026795.1|383476_384658_+|lipase
MDLCPVTGLQPVPLTPDLVHGAVELEPTDGGLRPHRLPAWARAQNADPMLGINEGQPAGVRVVLHTSATAVELDLVVTRRALTGAPARPQGQVDLVVDDEVLDGAVVPHGDLLTTDMMTGETTLEQGGPGTVRFPLPSGEKTVELWLPHQEGVELVALRADAPATAVPRADRPRWVHHGSSISHGSNAVRPTGTWPVVAARTAGLDLVNLGFGGSAVLDPFVARTMRDLDADLLSLKVGINIVGGDLMRRRVLGPALHGFLDTIREGHPTTPLLVVTPVLCPIHEETPGPGSVDVEALREGRLVFTATGDPAEVPAGRLTLRTVREELARVVEQRRADDPHLHLVDGLAMYGPDDVEAHPLPDALHPDEETHGLMGTRFAAIVPGAGGPFPTT
>NZ_CP053707.1|WP_173026796.1|384813_385971_-|CoA-transferase
MSAGPSPAPSGPLAGVRVVELGGIGPAPFAAMVLAEMGADVVRVDRPGAVSDVDASGGLRRSRPSIAVDLKHPDGVAAVRRLADGADVLIEGFRPGVLERLGLAPDDLLARNPRLVVGRMTGWGQEGPWAPRAGHDITYAALSGTLHAMGGAERPVAPVPVLADFAGGAMYLVSGVLAALVSRGTTGRGQVVDAAMVDGAAHLLTLVHTMLGAGAWEDRRRSNVLDGGAPFYDVYECADGRFVAVGALEPQFWRELLGLLGVTVDGEQYDTATWPAQRAALEAAFAGRTRDEWAAHFEGSDACVAPVLSLEEAHRHPHHAARGSFVPGPDGAPVPRPAPRLSGTPLGEPGPEPVPGQHTREQLLAHGFAAAEVEVLIASGAVVQA
>NZ_CP053707.1|WP_173026797.1|385967_387005_-|glucose-6-phosphate-dehydrogenase-(coenzyme-F420)
MSAAQGIRVGYKASAEQFAPGELAGYAVLAEELGLDSVTISDHFQPWRLEGGHAPNSLAWMSWVLARTERIMVGTSVMTPTFRYNPPVVAQTFATMACLAPGRVMLGVGTGEALNEIAVGSVAEGEWPEFKERFGRLREAVTLMRQLWTEPRVTFEGEYYRTEDAAIYDRPDTPVPVYIAAGGPMVARYAGRHGDGFICTSGKGEELYRDQLVPSVDEGMDKAGRDHADIDRMIEVKVSYDPDPEKALENCRFWAPLSLSAEQKHSIHSPQEMERAADELPIEQVAKRWIVASRPEEVVETMRFYTDLGFDHLVVHGPGHDQDRFLRTFTEQVLPGLRELVPAAR
>NZ_CP053707.1|WP_173026798.1|387301_387700_-|VOC-family-protein
MAFPGLQHVAITVTDLERSTRWYTALFGAEPVLDEDEQDGRFHHTVFVLEGGQLFGLHTHQGRESGDAFDERRTGLDHVGFAVGSVAELEQWQARLDELGVEHGGVKRAGYGVGLSFRDPDNIALELFTGPE
>NZ_CP053707.1|WP_173026799.1|387861_388953_+|Glu/Leu/Phe/Val-dehydrogenase
MPPTDLVDLAGHEQVVFCSDPATGLRAVIALHSTALGPGLGGTRFHPYPSMDAAVADVLRLSRAMSSKNALAGLDHGGGKAVIIGDPHRDKTPELLRAYGRFVESLDGRYVTACDVGTYVADMDVVAEETRWATGRSPERGGAGDSSLLTALGVFQGMRAAAEHVWGEPTLAGRRVGIAGIGKVGARLTEHLLEDNAKVVVTDVDAEAVARLRGRHPEVTVVADAEELARTDLDVFSPNALGEALDDVTVEALQARVVCGGANNQLATHDTADRLAARGITYAPDFLVNAGGVIQVSDELHGFDMERARSRTQAIFEATREVLRTADAEHVTPAVAADRLAERRIAGGGRTPWLRGGDSPHAH
>NZ_CP053707.1|WP_173026800.1|389137_389320_+|DUF3073-domain-containing-protein
MGRGRAKAKQTKVARELKYFSPDTDLSALERELHTQSHTGDTADERDWDDDDGQWVSGRR
>NZ_CP053707.1|WP_173026801.1|389421_390966_+|cytosine-permease
MSETSAAETRRLGVETTGIEIIDEAERTASPRDLFWPWFAANVSVFGISYAAFVLGFGISVGQGVLVAVLGIVVSFLLCGVVAIAGKRGSAPTMILSRASFGVTGQKVPGVISWLTSIGWETFLSITAVLATATVFQRLGLGGGTATKIVAAVVVALLIVAASVAGYHVIMRLQSVLTWVTGAVTVMFVVIVLAQGTIDWSAVSAVPSGPPGAVVGAFVMVMTGFGLGWINIAADWSRYQRRDASDRAVVLWNTIGGSIAPVLLVGFGLLVAASDQKVADGIGSDPIGALAGILPTWFLVPFLVAVILSLVSGAVLGIYSSGLTLLSLGVKIPRPAAALVDGVILTLGTFFVVFVAQDFLGPFQSFLITLGVPLAAWAGIFIADLVMRRRDYDWGPDGADALFDARGRYGAWDWVSVGTMVLASVLGWGLVVNNFAQDAAWNNWQGYLLEPLGLGTYVTQGDGAPYWDGTWPYANIGVILAFVIGFGVTFVARRSAVRRQEQGAAAEAASPVAR
>NZ_CP053707.1|WP_173026802.1|390962_391490_+|isochorismatase-family-protein
MTADGHWLVVVDPQVVFAAPGTSPWGSPMFAGAVDRMRALAERFGPERTIVTRFVADPSLGGSWGPYYAEWPFALVPDADPLYAVVPELEGLAGSVVTAGTFGKWPVLRELVGADARVTVAGVATDCCVVSTVLPMADAGVTVEVVADACAGSTPQNHAQALAAMALFGPQVTIT
>NZ_CP053707.1|WP_173026803.1|391940_393131_+|endonuclease
MTRHQTRRRAVPTALALASALVVLLGLTAPASQAATPLTVAQAVATQDGASHTVRGYVVGQPTATSTVVRSAFPSDYALALADTASETSTAKMLYVQLPTALRSQWGLKTNPGLMGKQLDVTGTLAAYFSHPGMTSTTAVASAGTGGGDTGGGTGGGTGGGTGGTGAYDSTYYAPAVGKTGSALKTALHGIIDDQTKLTYDQVWTALKDTDEDPNNTNNVVEIYSGRSIAKSDNGGGVDQWNREHVWAKSHGDFGTATGPGTDVHHLRPEDVTVNSTRGNLDFDNGGGAVAQCTGCLSDSDSFEPRNAVKGDVARMIFYMAVRYEGDDGWANLEMNNSVGNGAAPSIGRLSVLLQWNAQDPVDASEMRRNDRIYTTWQHNRNPFIDHPEWAPAIWG

Crispr_ID: NZ_CP053707_3

• CRISPR_ID: NZ_CP053707_3
• CRISPR_location: 567597-567701
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP053707_3

Consensus_repeat	Method
GTCCCGGCTACACCGCAGTAACCGT	CRISPRCasFinder

spacers of NZ_CP053707_3

>3.1|567622|55|NZ_CP053707|CRISPRCasFinder
CGCTGGAGCAGCACTGACTGCGGCGTAGCCGGCACCGGAGCCCGTGGCGACCCCG

CRISPR arrays and Neighbor proteins around NZ_CP053707_3

CRISPR arrays

The CRISPR arrays of NZ_CP053707_3

>merge|NZ_CP053707|3|567597-567701|CRISPRCasFinder
GTCCCGGCTACACCGCAGTAACCGTCGCTGGAGCAGCACTGACTGCGGCGTAGCCGGCACCGGAGCCCGTGGCGACCCCGTCGCCGGCTACACCGCAGTAACCGT

>NZ_CP053707|3|2|567597-567701|CRISPRCasFinder
GTCCCGGCTACACCGCAGTAACCGT	CGCTGGAGCAGCACTGACTGCGGCGTAGCCGGCACCGGAGCCCGTGGCGACCCCG
TCGCCGGCTACACCGCAGTAACCGT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053707.1|WP_173026961.1|572882_574340_+|cytochrome-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl|CDD|376587
NZ_CP053707.1|WP_173026948.1|557030_558542_-|2-oxo-acid-dehydrogenase-subunit-E2	unknown	unknown	gnl|CDD|237001
NZ_CP053707.1|WP_173029955.1|566198_567590_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP053707.1|WP_173026955.1|565384_566185_-|glycosyltransferase-family-2-protein	unknown	unknown	gnl|CDD|133022
NZ_CP053707.1|WP_173026958.1|570303_571146_+|aldo/keto-reductase	unknown	unknown	gnl|CDD|381358
NZ_CP053707.1|WP_173026964.1|578643_579084_+|BlaI/MecI/CopY-family-transcriptional-regulator	unknown	unknown	gnl|CDD|367747
NZ_CP053707.1|WP_173026956.1|567769_568822_-|NAD-dependent-epimerase/dehydratase-family-protein	unknown	unknown	gnl|CDD|187566
NZ_CP053707.1|WP_173026952.1|563092_563518_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP053707.1|WP_173026951.1|561332_563126_+|alpha/beta-hydrolase-family-protein	unknown	unknown	gnl|CDD|226849
NZ_CP053707.1|WP_173026959.1|571204_571591_+|phage-holin-family-protein	unknown	unknown	gnl|CDD|224861
NZ_CP053707.1|WP_173029956.1|577021_578641_+|thiol-reductant-ABC-exporter-subunit-CydC	unknown	unknown	gnl|CDD|274331
NZ_CP053707.1|WP_173026963.1|575405_577004_+|thiol-reductant-ABC-exporter-subunit-CydD	unknown	unknown	gnl|CDD|274323
NZ_CP053707.1|WP_173026960.1|571631_572651_+|UDP-glucose-4-epimerase-GalE	unknown	unknown	gnl|CDD|177883
NZ_CP053707.1|WP_173026962.1|574357_575389_+|cytochrome-d-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl|CDD|376764
NZ_CP053707.1|WP_173026950.1|560870_561269_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP053707.1|WP_173029954.1|559525_560620_-|pyruvate-dehydrogenase-(acetyl-transferring)-E1-component-subunit-alpha	unknown	unknown	gnl|CDD|213783
NZ_CP053707.1|WP_173026954.1|564686_565388_-|DUF2064-domain-containing-protein	unknown	unknown	gnl|CDD|275102
NZ_CP053707.1|WP_173026957.1|569022_570141_-|histidinol-phosphate-transaminase	unknown	unknown	gnl|CDD|179559
NZ_CP053707.1|WP_173026953.1|563514_564690_-|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl|CDD|238198
NZ_CP053707.1|WP_173026949.1|558557_559529_-|alpha-ketoacid-dehydrogenase-subunit-beta	unknown	unknown	gnl|CDD|223101

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP053707.1|WP_173026961.1|572882_574340_+|cytochrome-ubiquinol-oxidase-subunit-I	gnl|CDD|376587	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I. This family are the alternative oxidases found in many bacteria which oxidize ubiquinol and reduce oxygen as part of the electron transport chain. This family is the subunit I of the oxidase E. coli has two copies of the oxidase, bo and bd', both of which are represented here In some nitrogen fixing bacteria, e.g. Klebsiella pneumoniae this oxidase is responsible for removing oxygen in microaerobic conditions, making the oxidase required for nitrogen fixation. This subunit binds a single b-haem, through ligands at His186 and Met393 (using SW:P11026 numbering). In addition His19 is a ligand for the haem b found in subunit II.	0
NZ_CP053707.1|WP_173026948.1|557030_558542_-|2-oxo-acid-dehydrogenase-subunit-E2	gnl|CDD|237001	PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed.	7.47204e-146
NZ_CP053707.1|WP_173026951.1|561332_563126_+|alpha/beta-hydrolase-family-protein	gnl|CDD|226849	COG4425, COG4425, Predicted membrane protein [Function unknown].	4.74854e-165
NZ_CP053707.1|WP_173026955.1|565384_566185_-|glycosyltransferase-family-2-protein	gnl|CDD|133022	cd04179, DPM_DPG-synthase_like, DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the existence of adapter molecules for membrane anchoring. This family also includes bacteria and archaea DPM1_like enzymes. However, the enzyme structure and mechanism of function are not well understood. The UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate. This protein family belongs to Glycosyltransferase 2 superfamily.	4.99998e-39
NZ_CP053707.1|WP_173026958.1|570303_571146_+|aldo/keto-reductase	gnl|CDD|381358	cd19132, AKR_AKR5D1_E1, AKR5D and AKR5E families of aldo-keto reductase (AKR). 2,5-diketo-D-gluconic acid reductase B (DkgB) from Corynebacterium sp. and 2,5-diketo-D-gluconic acid reductase Zymomonas mobilis are founding members of aldo-keto reductase family 5 member D1 (AKR5D1) and E1 (AKR5E1), respectively. DkgB (EC 1.1.1.274), also called 2,5-didehydrogluconate reductase (2-dehydro-D-gluconate-forming), or 2,5-DKG reductase B, or 2,5-DKGR B, or 25DKGR-B, catalyzes the reduction of 2,5-diketo-D-gluconic acid (25DKG) to 2-keto-L-gulonic acid (2KLG).	7.17008e-142
NZ_CP053707.1|WP_173026964.1|578643_579084_+|BlaI/MecI/CopY-family-transcriptional-regulator	gnl|CDD|367747	pfam03965, Penicillinase_R, Penicillinase repressor. The penicillinase repressor negatively regulates expression of the penicillinase gene. The N-terminal region of this protein is involved in operator recognition, while the C-terminal is responsible for dimerization of the protein.	4.60807e-26
NZ_CP053707.1|WP_173026956.1|567769_568822_-|NAD-dependent-epimerase/dehydratase-family-protein	gnl|CDD|187566	cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs. This subgroup contains UDP-N-acetylglucosamine 4-epimerase of Pseudomonas aeruginosa, WbpP, an extended SDR, that catalyzes the NAD+ dependent conversion of UDP-GlcNAc and UDPGalNA to UDP-Glc and UDP-Gal. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	2.85383e-61
NZ_CP053707.1|WP_173026954.1|564686_565388_-|DUF2064-domain-containing-protein	gnl|CDD|275102	TIGR04282, hypothetical_protein, transferase 1, rSAM/selenodomain-associated. Members of this protein family show strongly correlated phylogenetic distribution, and in most cases co-clustering, with an unusual radical SAM enzyme (TIGR04167) whose C-terminal pfam12345 domain often contains a selenocysteine residue. Other members of the conserved gene neighborhood include another putative glycosyltransferase, an alkylhydroperoxidase family protein (TIGR04169), and a phosphoesterase family protein (TIGR04168). The cassette is likely to be biosynthetic but its exact function is unknown. [Unknown function, Enzymes of unknown specificity].	4.47795e-34
NZ_CP053707.1|WP_173026959.1|571204_571591_+|phage-holin-family-protein	gnl|CDD|224861	COG1950, COG1950, Predicted membrane protein [Function unknown].	3.23373e-18
NZ_CP053707.1|WP_173029956.1|577021_578641_+|thiol-reductant-ABC-exporter-subunit-CydC	gnl|CDD|274331	TIGR02868, ABC_transporter_ATP-binding_protein, thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.	3.9091e-106
NZ_CP053707.1|WP_173026963.1|575405_577004_+|thiol-reductant-ABC-exporter-subunit-CydD	gnl|CDD|274323	TIGR02857, transport_ATP-binding_protein, thiol reductant ABC exporter, CydD subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD.	9.69667e-139
NZ_CP053707.1|WP_173026960.1|571631_572651_+|UDP-glucose-4-epimerase-GalE	gnl|CDD|177883	PLN02240, PLN02240, UDP-glucose 4-epimerase.	0
NZ_CP053707.1|WP_173026962.1|574357_575389_+|cytochrome-d-ubiquinol-oxidase-subunit-II	gnl|CDD|376764	pfam02322, Cyt_bd_oxida_II, Cytochrome bd terminal oxidase subunit II. This family consists of cytochrome bd type terminal oxidases that catalyze quinol-dependent, Na+-independent oxygen uptake. Members of this family are integral membrane proteins and contain a protohaem IX centre B558. One member of the family, Klebsiella pneumoniae CydB, is implicated in having an important role in micro-aerobic nitrogen fixation in the enteric bacterium Klebsiella pneumoniae. The family forms an integral functional unit with subunit I, family Bac_Ubq_Cox, pfam01654.	2.56112e-108
NZ_CP053707.1|WP_173029954.1|559525_560620_-|pyruvate-dehydrogenase-(acetyl-transferring)-E1-component-subunit-alpha	gnl|CDD|213783	TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc. [Energy metabolism, Pyruvate dehydrogenase].	2.3519e-177
NZ_CP053707.1|WP_173026957.1|569022_570141_-|histidinol-phosphate-transaminase	gnl|CDD|179559	PRK03321, PRK03321, putative aminotransferase; Provisional.	0
NZ_CP053707.1|WP_173026953.1|563514_564690_-|molybdopterin-dependent-oxidoreductase	gnl|CDD|238198	cd00321, SO_family_Moco, Sulfite oxidase (SO) family, molybdopterin binding domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). SO catalyzes the terminal reaction in the oxidative degradation of the sulfur-containing amino acids cysteine and methionine. Assimilatory NRs catalyze the reduction of nitrate to nitrite which is subsequently converted to NH4+ by nitrite reductase. Common features of all known members of this family are that they contain one single pterin cofactor and part of the coordination of the metal (Mo) is a cysteine ligand of the protein and that they catalyze the transfer of an oxygen to or from a lone pair of electrons on the substrate.	6.55076e-29
NZ_CP053707.1|WP_173026949.1|558557_559529_-|alpha-ketoacid-dehydrogenase-subunit-beta	gnl|CDD|223101	COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion].	4.79822e-158

Protein sequences

>NZ_CP053707.1|WP_173029955.1|566198_567590_+|hypothetical-protein
MTTRPPAPEVDRAGRRAGWGLLAGALLVGFAVLVPVVTGVDVVAGGAAPLIGDWVLRYGPSSVVAVLVVAALAHPRLPDVVARMPWGRLLLASWLVGAVWMVSLALVDGYAGLGRVLDHGTEYLESARKIDDVGEMLRVYVSRIPLDAPGHWAVHLAGHPPGAVLMFIGLDRIGLGAWQVAGPLVVAVAATTPVAVAVTLDRLGARDAARRALPFLVVGPSAVIAAVSADAVFAATVAWGMAALAAALRAGGGRRWVLAVVAGLLLGWCVMESYGLVLAGLLAVGVLLAARVSWVVRVRVAGVAALVALGVVLVFAALGFAWWEAFPVLHDRYWAPGDVASRRPAWYWVVGNLGALVLCAGFALPAGVAAASRSVVRLVTAAGRASSAAWERAVGPLLAAGVGMVAVADLSLMSKAEVERIWLPFVPWMLLGTLWLPERWRRPALVGQGVLALLVQHLVRTVW
>NZ_CP053707.1|WP_173026955.1|565384_566185_-|glycosyltransferase-family-2-protein
MPPACPAERALPPGWDHHPPPTSHPAVCSLGASAPPRPPTLLSVTTCDLVLPCRDEAAALPGVMARVPEGFAVIVVDNGSRDGTAEVARGLGATVVEESRPGYGAAVHAGVEAASAEYVAVLDGDGSMDPAELVPLLAEVRDGTATMAVGRRRPGARGVWPWHARTGNAVVLAWLRRRTGLAVRDIAPARVCRRTDLLDLGVEDRRFGYPVELLVRAQRAGWTITEHDITYMPRAAGTRSKVSGSVRGTLRAGRDFARVLATEAGR
>NZ_CP053707.1|WP_173026954.1|564686_565388_-|DUF2064-domain-containing-protein
MRGSILVMAKAPVPGQAKTRLAARVGDEAAADLAAAALLDTLDAAAQVWPRGRRVLALAGDLSQALREKSIRRMAADWHVVPQGGGIFAERLVDGHRQAHRLAGGPVVQVGMDTPQAHPDQLRAVSDAAHEHDRPVLGPALDGGWWVLVTTHPHQARVLAGVPMSRADTGRLTAAALADAGHAPVEGPALRDVDEVEDAEAVALEAPGTRFAERWRSLVLLPDAERGSTGATR
>NZ_CP053707.1|WP_173026953.1|563514_564690_-|molybdopterin-dependent-oxidoreductase
MSERALRGVAARLDARIPRPEDFDDTLRGPRTAARIGVWLGPAFVVCFLTGVFSHALQHPGSFPLPTGPTRLYQVTQGLHVAAGTAAVPLLLVKLWSVFPRFFERPPLAPKRLVLHLLERVSVFLLVGSAIFQLATGLANSAQWYPWRFDFIRSHYAIGWVAVGSVVLHVAVKLPQVRAAFGAPPETRPARAGTPSRRSLLRTTWLASAVAVVATSAVELPGLRRVALLAVRSGDGPQGIPVNRSAVGALVADLAVDPAWRLKVTGPTGTVELSRDELLAMPQRSVVLPIACVEGWSASGTWGGVAVRDVVALVGGTTSDDVLVRSLQPRGAYRESTLPSAWVARTDSLLALSLAGEPLDPDHGYPCRLITSARPGVLQTKWLGEVEVVRA
>NZ_CP053707.1|WP_173026952.1|563092_563518_-|hypothetical-protein
MRAARALLGVVGLAALAWGLLLVSDLGPQVVDVLVWVVGGILAHDAVLAPVVVGLGALLGLAAPAWMRPPLVRLLVVLGPLTLVAVPVLGRYGARPDNPTLLDRPYRTGWLVIAAVAVLLTVVGAVRARRAQPVDEIEPRP
>NZ_CP053707.1|WP_173026951.1|561332_563126_+|alpha/beta-hydrolase-family-protein
MTLQTRARPGGARGRAVPLVARLAATGARLQRFEPPLGAPSRITEARFSGPGLLLGAVFLAASLAPSLLPRPSVVQGAISGVSLFLGYAAGTALSALRAYLGIPRLRGRVHEGVVGAAAAVAVAALVLAAWKQVGWQNDIRLLYGMPPIGPDGWPLVAAVTVLTAVGLLLVTRTVVAAFLGVRRRLNRRMPRRVSALLGGTLVVVGLWAAFTGVLVNAFFAGANALFAPSDQVVSAGSRAPTAPVRSGGPGSLVDFADLGAEGRGFVSGGPTVDAINAVTGGGARLPVRVYVGLRSAETADERAQLVLRELQRTGGFERKVLVLATTTGTGYLDRNGTDPLEYLWNGDTAIAGVQYSYLPSWISLLADQDSARETSQAVFSAVHRYWSTLPEESRPRLYLYGLSLGAYGVESILGSFNLINEPIDGALLVGPPFVSPVHEQLVAERDAGSPASLPVYGGGRTVRFASETRDVDRTPGQWGPTRVVYLQHASDPVVFFSTDLASTPPAWLRADQRGPDVSPRMGWFPLVTMVQVLLDLPGAGSVPMGYGHLYSAPANLRAWVAITRPEGWDAASLARLSDVVAQRPHPYGRGSISSTG
>NZ_CP053707.1|WP_173026950.1|560870_561269_+|hypothetical-protein
MTSAARPLAVLVTGTVLALTGCGSSDGPGGAAPPASAPLTEAPADPGATSTPDPSQGARGRFTEATVEVASTGGGCTYVTTDAGERWALRGTVPEVSAGQRLAVTGAPDDTAYDACPDGRPFLVTAVTPAVR
>NZ_CP053707.1|WP_173029954.1|559525_560620_-|pyruvate-dehydrogenase-(acetyl-transferring)-E1-component-subunit-alpha
MVQLLSPEGERVPHAELDALVDELSDEALRGLYRDLVLVRRFDAEATALQRQGELGLWASLLGQEAAQVGSGRAMRRQDYAFPTYREHGVAWTRGVDPVNLLGMFRGVNHGGWDPNEKNFHLYTIIIGAQTLHATGYAMGVQRDGDVGTGDGARDTAVIAYFGDGATSQGDVSEALVFAGVNNSPVVFFCQNNQWAISEPNEKQTRAPLWHRARGFGFPGIRVDGNDVLAVWAVTKQALDAARSGQGPTFVEAFTYRMGAHTTSDDPTKYRVSAEVEVWKHRDPIERYKRWLTTTGTGDAEFFDAVDAEADELGASVRERCLSMPDPQPSEMFDHVYASEHPVTAREKEWFAGYHASFEEEGAR
>NZ_CP053707.1|WP_173026949.1|558557_559529_-|alpha-ketoacid-dehydrogenase-subunit-beta
MSTTTIAKGITSGLRAAMEKDPKVVLMGEDIGKLGGVFRVTEGLQKDFGEDRVIDTPLAEAGIMGTAIGMALRGYRPVVEIQFDGFVYPAFDHIVSQVAKLHARSLGFVKMPIVIRIPFGGGIGAVEHHSESNETYFAHTAGLRVVACSNPHDAHWMIQQAIESDDPVVFYEPKRRYWDKGEVGDGPDGALGSARVLREGTDLTLLAYGPMVKTCLQAAQAAQEEGRSIEVVDLRSLSPLDEGAILASARKTGRVVVVHEASTFLGIGAEISAMLTERAFYELEAPVLRVGGYNVPYPPSRLEEEFLPDLDRVLDAVDRSLAY
>NZ_CP053707.1|WP_173026948.1|557030_558542_-|2-oxo-acid-dehydrogenase-subunit-E2
MALREFKLPDPGEGLTEADIVTWHVAVGDTVKVNDVVVEIETAKSLVELPVPFAGTVSALHVAEGDTVEVGTAIITVDDGVGGPAAPAAPAPAAAQEPAAPAASAASGSDGEEIGEGLIGGTTSTGRTAVLVGYGVKQTEAVRRPRKGAAAPAAAPAPAASPSPAAAPTAAPAPAPVQKSTNVSISAQPEGATGARALAKPPVRKLAKDLGVDLGSVTPTGDGGVVTRADVEAAAAGAGADGEWSHAYADGDPDDITTRSGADRMGVREVRTPIKGVRKHTAQAMVASAFTAPHVTEWVTVDVTATMDLVENLKRDREFRDVKVTPLLVLAKAMCVAVRRNPGINAAWDEAAQEIVLKHYVNLGIAAATPRGLVVPNIKDADRMTMRELADAIAALTATAREGRTPPADMSGGTLTITNVGVFGVDAGTPILNPGESAILAFGSVTRRPWVVGTGADERIEPRWVTTLALSFDHRLVDGELGSRFLADVAALLADPARGLVWG
>NZ_CP053707.1|WP_173026956.1|567769_568822_-|NAD-dependent-epimerase/dehydratase-family-protein
MRILLTGAAGFIGTATWRELVAEGHDVVAVDLLLPEAHAATTRDDPPAGVHVLDVREAGGWADLLQGCDAVVHLAAMVGAGATAADLPLYAGHNDLGTAALLAAMHAEGVGRFVQASSMVVYGEGRYSCPQHGPQAPGPRTREALDGGEFDNPCPVCDGPLDWELVPEDAPFDARSSYAVSKVAQEGYAAAWARQAPGAAVSLRYHNVYGPGMPRDTPYSGVAAMFRSSLERDEPPTVYEDGRQMRDFVHVADVARANLAAVRGVLAAPVASHRAYNVCSGTPIAIADVARHVAAGSGRDLEPRVTGQYRIGDVRHVVASPERAREELGFSASVTPEEGLGAFATAPLRA
>NZ_CP053707.1|WP_173026957.1|569022_570141_-|histidinol-phosphate-transaminase
MTDDLTAEAAARPTPVRLRDALGSLPAYAPGKPATVREGLVTYKASSNENPFPPLPSVLDVVRDAAGGINRYPDMAVGALTEAIAARLGVPAARISTGPGSVGVLDQLVRATCDDGDEVLFAWRSFEAYPILTTLAGATPVMVPLAPGERHDLDAMADAVTERTRLVLVCTPNNPTGTTVGADELEAFLARVPRDVVVVIDEAYLEFVDAPDAPDALAVHEAHPNVVVLRTFSKAYGLAGLRVGYAVAHEPVAQALRKSALPFGVNSLAQVAALASLEATDELDVRVKELVAERERVVAALREQGWDVPQQQANFVWFPLGDDTPAFAAACDEAGLTVRPYGTDGVRVTVAETEANDRLLEVAGAWRATHPA
>NZ_CP053707.1|WP_173026958.1|570303_571146_+|aldo/keto-reductase
MASDPTPHRLSDGTTAPLVGFGTYPLKGEEGIAAMVSALEAGYRYLDTAVNYENEAEVGEALRRSGVPREEVRVATKVPGRFHERELALTSLRDSARTLGLEQIDVALIHWPNPSRDLYPQAWQALVEAQREGLVRTIGVSNFTEAHLTRVIDETGVTPALNQVELHPLFPQEQMRAVHARLGILTQAWSPLGKRQAPFGADPVAAAAATHDVSPGQVILRWHVQLGSMPLPKSATPARQRENLDVTGFALTDDEMAAITGLRRADGRLFDGDPDTHEEM
>NZ_CP053707.1|WP_173026959.1|571204_571591_+|phage-holin-family-protein
MTNFLIRVGINAVALWVAALVVQGVNLAEDQVSTGRKILTVVLVALVFGLVNAVIKPIATFFSFPFIILTLGLFTFVVNALMLQITEWISNGLGLSFTIDDFFWDAVLAAVVITLVSWVLSVVLPEDR
>NZ_CP053707.1|WP_173026960.1|571631_572651_+|UDP-glucose-4-epimerase-GalE
MRVLVSGGAGYIGSHTVVQLVEAGHDVVVVDSFANAKPTVVGRIEAITGQPLDVRSFDLTDHDKTEHLFAHEAFDAVIHFAGFKAVGESVEKPLEYYENNLGSTFSLVRAMRRHGVRRLVFSSSATVYGADAPVPMHEDLPTSATNPYGWTKVMQEQVLRDVAAADPTWRVALLRYFNPVGAHASGTIGEDPSDVPNNLMPYIAQVAVGRREKLLVFGGDYPTPDGTGVRDYIHVEDLAAGHVAALTRLGTTDDAVSTWNLGTGHGTSVLELLHAFERACGHELPHEVVERRPGDIAASYADPSRAEAELGWQATRTVDDMCADTWRWQSRNPHGYPDA
>NZ_CP053707.1|WP_173026961.1|572882_574340_+|cytochrome-ubiquinol-oxidase-subunit-I
MGSSLDVARWQFAITTVYHFLFVPVTIGMSGVVAYFHTQWVRTHRPEYYRLTKFFGKLFLINFALGLVTGIVQEFQFGMNWSDYSRFVGDIFGAPLAFEALLAFFLESTFLGVWVFGWGRIPERLHASSMWLVHVGTVLSAYFILAANSFMQHPVGFRFNPETGRAEMSDFIAVLTNKVQLVTFPHVVMSAYMVGGAVIMGVALWLLRRDRATDDAPVYRKAVRVGAVVSLVASLGVIVSGDVQGKIMTEVQPMKMAAAEALYDTTSNAPFSVLSIGPLDGSTATRVIQVPGLLSFLGTGSFDGTVEGINDLKVSERAMAERVGQQYGPEVAALVTADDYTPIVPVAYWTFRLMMGAGFLTMLFCAAALWVTRKNGAPQSRWWVWVAVLAPLLPIFANSFGWIFTEMGRQPWLVYGLMTTATGVSPSVSVGEVWVSMVVYTLLYAALAVVEVKLFLTYVRRGAEPFEDPADHTDVPEDAPLQFAY
>NZ_CP053707.1|WP_173026962.1|574357_575389_+|cytochrome-d-ubiquinol-oxidase-subunit-II
MDTLQLLWFGLIGLLWAGYLVLEGFDFGVGALLPSLGAGRDAEDTEKRRRVMLTTIGPHWDGNEVWLLTAGGATFAAFPEWYATMFSAFYLPLLLVLVALIVRNMGFEYRGKRDDATWRKRWDIAIIGGSVAAPLLVGVALTNVVRGVPLDGDSEYAGNLLTLLNPLSLLGGLTVLALSLTHGAFFLALKTSGSIREDARRMGTVLGLVTAGLAVVTLLWLGVSTGSVWSWATTVVAAVALLAAIYANTRGREGWAFVGTAVTAATTVATYFLALYPDVMPTSLAGGRSLTIENASSSPLTLKIMTGAALVFTPIVLLYTAYTYYTFRKRIGTHHIPAPVSVR
>NZ_CP053707.1|WP_173026963.1|575405_577004_+|thiol-reductant-ABC-exporter-subunit-CydD
MRPFDPHVLTVAPAARRPVLLLAVVGVLQGAATIGTAFALAALVVAVVDGAGLVGPAAWLAGLLTVRAALGWSSERVAAHAGVEVTAALRTALLRRWLTAPAEARPDPDRAATLAAQGVAAVEPYAARFLPALVAGAVVPVLALAALVRVDWVSALVVVLTLPLLPLFAALIGAATRDETDRRWQALSQLSGHFVDVMRGLPTLVGYGRAERQVEVVGEVSRRHRSATMRTLRLAFMSSAALELLASISVAIVAVTVGLRLTHGTVTLQTGLLAILLAPEAYWPIRRVGAEFHNAADGAEAVAAVLDDLTTDTSVAAPGTAGTTTTDRLGVGLVDVTYAYPGSPEPVVRGVTLTAGPGLTVVTGPSGVGKSTLLELVAGLRTPASGSVAAGRCHLVTQRPFLPDGTLRDALRLGTDATDDALWEALRRVGLEGYVAGLPHALATPLGDDGVGLSAGQRARVAIARATLSSAPVLLVDEPTAHLDESASAQVHALLQQLAERRTVLVVTHRPELVHLADQHVVVTAAGTEVHR
>NZ_CP053707.1|WP_173029956.1|577021_578641_+|thiol-reductant-ABC-exporter-subunit-CydC
MRPTRATVLGGLLGGAATSAGIALTATSGWLIVRASERPVILTLLAAIVAVRAFGMARPFFRYLERLVSHDAALADLADRRQAVYAALVPLTPARLGRRSRSAVLTGVVDDLTDVVEAQVRVTVPLVSSAVAGLLATALTAAFAPAVGLVVVGLLVVVALGCALAWWFESRSRDALLAARAETARVGDLVARQAGELRAIGAQDAALGWLDAAHATLRAAVRRQSRGRALVAALLLLGTAMATVAAATLVDPAATGGPVAALLVLVPVAVGEALAPLVDTMRALARAQGSRARLAVLLDQEPAVHEPEHPATRPTSEGPGGAIVRLESASASWTGTREDLAPTDLELVPGRHVGVVGPNGSGKSTLLAVLARSLDVRGGRHTVGGADVRDLALADARGDVAVVDDEPHVFATTLAENLRLARPGCDDADVRRALDLAGLGAWVDGLPDGLGTRLGTGGRGLSGGERTRLGVARAVLADRPVVLLDEPAAHLDHPTATAVLDDVLDATRDRAVVLVSHRPEAHDRLDAVLTLTAHPGPKE
>NZ_CP053707.1|WP_173026964.1|578643_579084_+|BlaI/MecI/CopY-family-transcriptional-regulator
MPHSTSAPRLGDLERVVMERLWETGHDEGATVREVFEILERDREIAYTTVMTVLDRLAKKELVTRVREGRAWRYFPADSREALTAQTMRRTLDDMDVTDRRTALLHFFDGASTEEIADIKAVLAEVEAKAEQGANAPRGLRGRLRR

Crispr_ID: NZ_CP053707_4

• CRISPR_ID: NZ_CP053707_4
• CRISPR_location: 614998-615155
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 2 spacers

Consensus repeat of NZ_CP053707_4

Consensus_repeat	Method
CGGCCTCGAGGCGGTAGACCTCGTCGGCGTGG	PILER-CR

spacers of NZ_CP053707_4

>4.1|615030|47|NZ_CP053707|PILER-CR
CAGGTCGACTGGCCGGCGTAGCGGACCGGGCCGGCCGAGAGGTCGAC
>4.2|615109|46|NZ_CP053707|PILER-CR
AAGCCGGCGAGCGCGACCTCCGAGGTGCCGGTGAGGTAGAGGTCGT

CRISPR arrays and Neighbor proteins around NZ_CP053707_4

CRISPR arrays

The CRISPR arrays of NZ_CP053707_4

>merge|NZ_CP053707|4|614998-615155|PILER-CR
CGGCCTCGCGGCGGTAGCAGGTCGACTGGCCGGCGTAGCGGACCGGGCCGGCCGAGAGGTCGACGACCTCGTCGGCGTGGAAGCCGGCGAGCGCGACCTCCGAGGTGCCGGTGAGGTAGAGGTCGTCGGCCTCGAGGCGGTAGACCTCGTCGGCGTGG

>NZ_CP053707|4|1|614998-615155|PILER-CR
CGGCCTCGCGGCGGTAGCAGGTCGACTGGCCG	GCGTAGCGGACCGGGCCGGCCGAGAGGTCGACGACCTCGTCGGCGTG
GAAGCCGGCGAGCGCGACCTCCGAGGTGCCGG	TGAGGTAGAGGTCGTCGGCCTCGAGGCGGTAGACCTCGTCGGCGTG
G

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053707.1|WP_173026996.1|610881_611763_-|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|213236
NZ_CP053707.1|WP_173027007.1|623052_623907_-|FTR1-family-protein	unknown	unknown	gnl|CDD|251822
NZ_CP053707.1|WP_173027006.1|621426_622860_-|glucose-6-phosphate-dehydrogenase	unknown	unknown	gnl|CDD|237234
NZ_CP053707.1|WP_173026999.1|614130_614493_+|hypothetical-protein	unknown	unknown	gnl|CDD|226318
NZ_CP053707.1|WP_173026993.1|607351_608404_-|iron-ABC-transporter-permease	unknown	unknown	gnl|CDD|223682
NZ_CP053707.1|WP_173026998.1|612498_613920_-|sensor-histidine-kinase	unknown	unknown	gnl|CDD|226951
NZ_CP053707.1|WP_173027001.1|615937_616897_+|DUF4328-domain-containing-protein	unknown	unknown	gnl|CDD|379508
NZ_CP053707.1|WP_173027004.1|618321_619674_-|cation:proton-antiporter	unknown	unknown	gnl|CDD|223104
NZ_CP053707.1|WP_173026997.1|611815_612571_-|response-regulator-transcription-factor	unknown	unknown	gnl|CDD|225107
NZ_CP053707.1|WP_173026995.1|609655_610882_-|ABC-transporter-permease	unknown	unknown	gnl|CDD|378925
NZ_CP053707.1|WP_173027009.1|625476_626304_+|patatin-like-phospholipase-family-protein	unknown	unknown	gnl|CDD|132848
NZ_CP053707.1|WP_173026994.1|608400_609456_-|iron-siderophore-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|238566
NZ_CP053707.1|WP_173026990.1|604612_605440_-|siderophore-interacting-protein	unknown	unknown	gnl|CDD|99790
NZ_CP053707.1|WP_173027008.1|624063_625443_-|HAD-IB-family-hydrolase	unknown	unknown	gnl|CDD|319796
NZ_CP053707.1|WP_173026992.1|606275_607352_-|iron-ABC-transporter-permease	unknown	unknown	gnl|CDD|376439
NZ_CP053707.1|WP_173026991.1|605436_606279_-|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224045
NZ_CP053707.1|WP_173027005.1|619670_620216_-|DinB-family-protein	unknown	unknown	unknown
NZ_CP053707.1|WP_173027002.1|616913_617549_-|LysE-family-translocator	unknown	unknown	gnl|CDD|224199
NZ_CP053707.1|WP_173027003.1|617603_618332_-|type-1-glutamine-amidotransferase	unknown	unknown	gnl|CDD|153212
NZ_CP053707.1|WP_173029959.1|620337_621390_+|NAD(+)/NADH-kinase	unknown	unknown	gnl|CDD|224513

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP053707.1|WP_173026996.1|610881_611763_-|ABC-transporter-ATP-binding-protein	gnl|CDD|213236	cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter. This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	4.12064e-99
NZ_CP053707.1|WP_173027007.1|623052_623907_-|FTR1-family-protein	gnl|CDD|251822	pfam03239, FTR1, Iron permease FTR1 family.	2.09824e-45
NZ_CP053707.1|WP_173027006.1|621426_622860_-|glucose-6-phosphate-dehydrogenase	gnl|CDD|237234	PRK12854, PRK12854, glucose-6-phosphate 1-dehydrogenase; Provisional.	0
NZ_CP053707.1|WP_173026999.1|614130_614493_+|hypothetical-protein	gnl|CDD|226318	COG3795, COG3795, Uncharacterized protein conserved in bacteria [Function unknown].	1.62125e-12
NZ_CP053707.1|WP_173026993.1|607351_608404_-|iron-ABC-transporter-permease	gnl|CDD|223682	COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism].	1.06862e-63
NZ_CP053707.1|WP_173026998.1|612498_613920_-|sensor-histidine-kinase	gnl|CDD|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	4.15198e-35
NZ_CP053707.1|WP_173027001.1|615937_616897_+|DUF4328-domain-containing-protein	gnl|CDD|379508	pfam14219, DUF4328, Domain of unknown function (DUF4328). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 218 and 342 amino acids in length.	1.29651e-14
NZ_CP053707.1|WP_173027004.1|618321_619674_-|cation:proton-antiporter	gnl|CDD|223104	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism].	5.27435e-37
NZ_CP053707.1|WP_173026997.1|611815_612571_-|response-regulator-transcription-factor	gnl|CDD|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.76125e-72
NZ_CP053707.1|WP_173026995.1|609655_610882_-|ABC-transporter-permease	gnl|CDD|378925	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family pfam01061.	2.10444e-28
NZ_CP053707.1|WP_173027009.1|625476_626304_+|patatin-like-phospholipase-family-protein	gnl|CDD|132848	cd07209, Pat_hypo_Ecoli_Z1214_like, Hypothetical patatin similar to Z1214 protein of Escherichia coli. Patatin-like phospholipase similar to Z1214 protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.	4.83768e-42
NZ_CP053707.1|WP_173026994.1|608400_609456_-|iron-siderophore-ABC-transporter-substrate-binding-protein	gnl|CDD|238566	cd01146, FhuD, Fe3+-siderophore binding domain FhuD. These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA-like protein is comprised of two globular subdomains connected by a long alpha helix and binds its specific ligands in the cleft between these domains.	1.75118e-43
NZ_CP053707.1|WP_173026990.1|604612_605440_-|siderophore-interacting-protein	gnl|CDD|99790	cd06193, siderophore_interacting, Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family. Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Because flavins such as FAD can exist in oxidized, semiquinone (one-electron reduced), or fully reduced hydroquinone forms, FNR can interact with one and two electron carriers. FNR has a strong preference for NADP(H) vs NAD(H).	3.49911e-51
NZ_CP053707.1|WP_173027008.1|624063_625443_-|HAD-IB-family-hydrolase	gnl|CDD|319796	cd02612, HAD_PGPPase, phosphatidylglycerol-phosphate phosphatase, similar to Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C. This family includes Escherichia coli K-12 phosphatidylglycerol-phosphate phosphatase C, PgpC (previously named yfhB) which catalyzes the dephosphorylation of phosphatidylglycerol-phosphate (PGP) to phosphatidylglycerol (PG). This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	7.61324e-45
NZ_CP053707.1|WP_173026992.1|606275_607352_-|iron-ABC-transporter-permease	gnl|CDD|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	7.06548e-63
NZ_CP053707.1|WP_173026991.1|605436_606279_-|ABC-transporter-ATP-binding-protein	gnl|CDD|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	9.43838e-131
NZ_CP053707.1|WP_173027002.1|616913_617549_-|LysE-family-translocator	gnl|CDD|224199	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism].	1.31727e-32
NZ_CP053707.1|WP_173027003.1|617603_618332_-|type-1-glutamine-amidotransferase	gnl|CDD|153212	cd01741, GATase1_1, Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine amidotransferases, or as domains in a much larger multifunctional synthase protein, such as CPSase.	3.60012e-59
NZ_CP053707.1|WP_173029959.1|620337_621390_+|NAD(+)/NADH-kinase	gnl|CDD|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	1.03343e-47

Protein sequences

>NZ_CP053707.1|WP_173026999.1|614130_614493_+|hypothetical-protein
MAEYLLYFNQQWVGEHPPEWFASRAPLALAVVEEMRAAGVYVFAGGLEETAPVYSLDPTVGDEVLVTDGPFVETQEVLGGFAVVDVPDDAAAKEWGARISAACGWPHEVRRFGRHPDLPA
>NZ_CP053707.1|WP_173026998.1|612498_613920_-|sensor-histidine-kinase
MSTTARPAPPARPALARVAGWFGADETWQRPRPPVGRADVGWAVGLAVFGLVALELVRSVGVLRQTDAPWWVQWVAVLTGSALLVGRRRWPVTVAVLAALHMIVVGVTMPMIMGQFTMQVLYFVALMSGVAWARDRRWMLVVVGVIVVVMFTWIALQFAIGNAAQDYVDGTTAGERYGVMGQIPAAVLLTLVINVVYFGGAVVIGQLQWRSARDRAVLERQAATITSQTEALRQRAVTEERLRIARELHDVVAHHVSVIGIQAAAARRVMDRDPDATRSALAGIEGSSREAVTSMRGLLGTLREVERPSATPEDAGAERAPQPGLAQLPDLVAACTTPGRRVALDVVEARPGAATRLGAALAHSIHRTVQEALTNVEKHSTATRVSVVVRLDDVAGFAEVEVVDDGRPRAGSSGSGLGQLGIRERTASHRGTVEIGPRPTGGYRVRARYPWRDAAPGVPDSPDGLSDTAAVER
>NZ_CP053707.1|WP_173026997.1|611815_612571_-|response-regulator-transcription-factor
MARRGARRPGQPGRAVRHRGGGAVSAASDPAAPLRVLLVDDHAMVRSGFTMMLSVEDDLEVVGQAANGAEAVVVARETRPDVVLMDVQMPVLDGIEATRRIVAEDLGRVVVLTTFDRDDYLFDALDAGASGFLLKNAEPEQLVEAVRVVGSGSGILAPEVTRRVIERMTSERPAPRRPDPPGLARLTDREREVLVLVGRGLSNGEIARTLFLGEATVKTHVSNCLAKLQLRDRVQAVVLAHEAGLITAAED
>NZ_CP053707.1|WP_173026996.1|610881_611763_-|ABC-transporter-ATP-binding-protein
MLEIKDLTRRFGDTTAVDGVSFDVRDGILTGFVGGNGAGKTTTMRMVMGVLGIDGGEVLWRGRPVTAQDQRRFGYMPEERGLYPKQRVLDQLVYLAQLKGMEAGAARRAAQEHLERFGLAGRAGDRLQELSLGNQQRVQVVAALLHRPTALVLDEPFSGLDPTAVDSMADMLREHASTGVPVLFSSHQLDLVERLCDRLVILSRGRVVAAGGADELRSRGPVRYHLGLEGDAGWVREQRGIHVVDVDGRTALIEVVEEGAEQAVLREATSRGAVREFAPVRPALADIYREVAA
>NZ_CP053707.1|WP_173026995.1|609655_610882_-|ABC-transporter-permease
MTTLLTPPQTPEAPGADEPVAGRAAWTLVARREVVVKLTDRAFVIGTVVTLVLIAAFMGWQAWSAERTSTYTVAATSADRAMADRLASSATGIDDGVEVSVDPAADDAAARELVRSGDADAWLHRVDGGWVLTSDTEEQDSLTRVTQEVVRQATLAQQADELGTTVERLEAGSRVTTTLLTGDAERSGLAQGVAFAFAFLFYIATLTFGITLANSVVEEKQSRIVEIIATSIPVRQLLIGKIIGNSVLAIAQMLLYAGVGLVGLSLTPYSSLVTAVSGPVVWFLVFFVAGFVALAALWAVAGALASRTEEVQSTATPMTMLVMAVFFGSLFLDGTAKVVASYVPPFSAVLMPTRVLEGTAHWWEAVIALGLLVATALLVIRVAERLYRRALLQTSGKLSMKQAWVAPE
>NZ_CP053707.1|WP_173026994.1|608400_609456_-|iron-siderophore-ABC-transporter-substrate-binding-protein
MPSRRRLLAAAPLAAAALVLAACSTGPTGGAASTAAAGATADAAAFPVTIEHAYGSTTVTKAPTRIATVGWADADTLAALGIVPVGAPKITWGGNDAGSTDWFDEQVQEIGADASGMTRYDDSAGIPFDDIAATTPDLILGLSSGVTQEDYDKLSKIAPTVPWTDKAWGTPWQDQVAAIGKAVGKPTEAAALTASTEKTIADAVAAHPEIKGKTAAWAWFTPTDLSTIGLYTTSDLRPQMLREFGFADSPTVAELSAKDPSAFTANLSAEKASSLQADVVVFYAEQGAGADELRENALIGRIPALEDGHYVASADNEVALSMSLPSPLSVRTAVEDFLPKLASAVKGEPAA
>NZ_CP053707.1|WP_173026993.1|607351_608404_-|iron-ABC-transporter-permease
MSTTVAPPTRPAPTTGSRAGAARVALPWVLGGSALVVLAAVTASLLLGVQHLAPGAVLDALTGGGADPETAAIVASRVDRTVIGLVVGAAVALSGVVLQGLSRNPVAEPGILGLNSGAALAVVLGIRFLGLDSVGGYVVAAIVGTLLVAVLVQSLTLMAPRASAPVSMALAGAAVMALAQSLIGAVLVTDRGSLDSFRFWQVGSVAGRDAGQVLDVLPFLLVGAALALTSGPTLDAVALGDDLARGLGQNVVLHRGLAAAGAVLLAATATALAGPIAFVGLVVPHLVRVLVGVGHRRVLLVSALLGPAFVVLADVVGRLVAPPSEVQVGIVCAVLGAPVLVLVVRRVKGI
>NZ_CP053707.1|WP_173026992.1|606275_607352_-|iron-ABC-transporter-permease
MSTTLRENDVRDPAATSSTADALARARRGPRLRRRVVVGVLLLLVVALVVVRALLGDYRVSFVDAVRIIGGEPVPGASFVLLESTLPRALMAVLAGAAFGAAGAAFQTMLRNPLASPDVLGITLGASAGAVLVVVAFGVRGTPVTLAALAGSVLAALLILSQAGGRGGATGRMVLVGVALAAGLSALVHWLLVRASIYQAQDALVWLSGSLNTVTWADILRLLAVDAVLLPLLLVATGRLPVLGLGDDLAAALGVRVARVRVGVTVLVVGLVAAATAVVGPVAFVGFLSGPIARRLVPGRPSVGVAALVGAVVVVAADYAAAYAVPGTALPVGLVTGLLGAPVLLWMLRSRPTSQEGR
>NZ_CP053707.1|WP_173026991.1|605436_606279_-|ABC-transporter-ATP-binding-protein
MTVTETAPRVPQHPADTPAGSRLAARDLRLAYDDRVVVDGVSLAVPTGRTTAVVGPNGCGKSTLLRGLGRLLKPRGGQVLLDGDEIGALPTREVARRLGLLPQQPIVPEGVSVLELVERGRHPHHGLFRTWGRDDEVAVADALERTDLVHLAGVAVDSLSGGQRQRVWLAMVLAQRTPVLLLDEPTSFLDIAHQLDVLDLVRRLCDDDGTTVVMVLHDLAMAARYADHLVAMRDGRVVAEGTPHEVVTPEVVEAVFGVAARVIEDPETGTPVVLPRRRVS
>NZ_CP053707.1|WP_173026990.1|604612_605440_-|siderophore-interacting-protein
MSAVARERRTDASTGIVRADFPQLAATVAEVHDLGAGMRRLVCEAPGLRDFVPCGPDEYVGLLMPPPGAPLVLPDPEPVNVRATVAALPPAWRPALRWYTIREHDPVRGRVDIDVVTHGDSGPGSSWVSRARPGDAVGIRASGALYRGFEAGGRQVLVADETAVPSVAAILDAWGGADDARDHGVEVHVEVADPRMLAAYDLGDARVHVRRGRPGSAVLPALDAELARRPGPVAYGWACGEASLAAGARRVLVAHGADRRDVFFCAYWKLGRPRP
>NZ_CP053707.1|WP_173027001.1|615937_616897_+|DUF4328-domain-containing-protein
MTTGERTMAGAPAGWYDDPQDATRLRRWDGVAWTDAWMARGSGTAGLPTLRPAVGHRAPLPGWHRDPADPTRHRWWDGHAWTTRVVDGPLFLERSRLGSGFGALGRFLAGLLALNALIAVAAVVVALWSRAVVDRWLTDLGSVDPAEAERYDRIYLVLGGVSALVYLGTGVLFLAWLWKACSSDRVDPARLRFAQGWTVGAWFVPFLNLVRPYGIVADLCRGLGERLRGLPRWLVPAWWASFLVMLVADSASRAVGNAADTREPIEALELVRDWVWVDAVNGVVTVVGAVLATVLVLRVTAALGAGEHDVPLPEAPTAA
>NZ_CP053707.1|WP_173027002.1|616913_617549_-|LysE-family-translocator
MPSAATVLAFALASVVIVAIPGPSVLFTIGRALSAGRRAALLTVLGNAGGILTQIVAIAVGLGPLVASSAAVYTGLKLVGAGYLVHLGVQSVRHRRDLAAAWSAGMPAAPASHAVRAGYVVGVTNPKSLVFFMALLPQFVDRSGPVALQLLVLGAVFAVVALAGDGAVALAASRFREWFASSPRRMERVGGVGGLMMVGLGTGLLVTGRPD
>NZ_CP053707.1|WP_173027003.1|617603_618332_-|type-1-glutamine-amidotransferase
MPPEPGHGPVVLVVRNDPDSGPGRFAGWLTAAGVRVRLVDGASAPTSTEGLDGVLLLGGGFMPDADERAPWLPAERRLAAACLEDGTPLLGICLGAQLLALVAGGAVTADSGRTERGSVTVRRTPEAVHDPLLGGLPDAFPAIQNHRDEVTTLPAGAVHLATSATCPHQAFRVGAAAWGVQFHPEASADRLERWDPERVAADGFDLAALRSAAGKAEPASEAAARALLEAFVAVVASHRSRA
>NZ_CP053707.1|WP_173027004.1|618321_619674_-|cation:proton-antiporter
MSPQLVYVLLGGALLLAAVLPQALHRWALSAPIVLVCVGLLVGTTAISGDVVIDPVALRPWIEHLAEFTVLVALMGVGLALDRPLRPRLRASWAAWAPTWRLLGIAMPLTIAAVALLAVGPLGVAFPAALLLGAALAPTDPVLASDVQVEGPTLEGDGDDDLDEDDEVRFALTSEAGLNDGLAFPFVWAAVFLAGTAPAGGVLRWVGWELVGKVLVGLAVGCLVGWVLARLAFRASRRSLRLAEVGEPLLALSALLLAYGLSEFAHGYGFLAVFACAMTIRSFERHDEYHRHMHDVVERLETLLTLVMLLGLGFAITTGLLSNLDWRGVLVGLLLVFVIRPAAGYLAFLGHRQGTRTACLSRPERLVIGFFGVRGIGSLYYLAFALGHARFAEERWLWSTVGFTVALSVVVHGVLATPVMRWLERRRDEAAAAADRPAGPGGPDGMARAA
>NZ_CP053707.1|WP_173027005.1|619670_620216_-|DinB-family-protein
MTENADAALVPDTKDWTWVLERACPDCGFDPQAVGSDDVARLVAATTDPWPAVLARPDAAVRPDAATRSPLEYACHVRDVCRLFEQRLALLLTADDPTFDNWDQDATAVADRYGEQDPATVAAELREAAAGLADRFSGVEDVAWSRTATRSDGARFTTLSFGRYGLHDLAHHLTDVGVALP
>NZ_CP053707.1|WP_173029959.1|620337_621390_+|NAD(+)/NADH-kinase
MSAREPGRHVAAQRPSRDSFRAGDDAPPPRKRVAVVVNPTKFDDLDAVRATLARVCEANDWAPPELHETTVHDVGFGQTRQALEDGVDLVCALGGDGTVRAVAQEMVGSGVPLGLLPGGTGNLLARNLEMPVDDIERAMVVALTGRNRHVDAGWLTLDPEDLELEEGAGEGSSAGAQRHAFFVMAGMGLDAAIMDSTSEELKSRIGWGAYVPAGLRHMLTERFKVTLTVDGGPPETQRARMVVIGNCGKITGGIDLLPDAEPDDGMLDVIVLAPRGVAAWASVAARLITRSDRTNSTLERHKCQTATVNVDEPQRVQVDGDIIGEASRLSVEVQPRALVVRTENGRPTGA
>NZ_CP053707.1|WP_173027006.1|621426_622860_-|glucose-6-phosphate-dehydrogenase
MTAPTTVILFGATGDLAQRKLIPGLLHLFQSRLLDDLRVVGTSLDEKSPDEFRDFAHTAIREHSTREVDEADWKAFVDRIDYVPLSAGPQALADAVARAEKQLPGEVELRLHYLAVPPKAALAAVQTIADARLVERSRVVMEKPFGHDHASAVALNAQLHEVFDEEQIFRIDHFLGKEPAQNILAFRFANGLFEPIWHRNNISHVQIDVPETLGLSQRADFYEATGAYRDMVVTHLFQILAFTAMEPPTALEPAAISREKNKVFRSMQPIMPTDVVRGQYTGYHQEPGVAPESDTETFVALKCFVDNWRWAGVPFYLRTGKRMAEGARIISIAFKEPPQSMFPKGSGVGDQGPDHLTFDLADKSRMSLSFYGKRPGPGFRLDKLSMQFAMQETSWAGAVLEAYERLIYDAARGDRTLFTSATGIERLWEISQPILDNPPPVHPYAQGTWGPNQIHQLIAPFTWRLPFERTWREHTKG
>NZ_CP053707.1|WP_173027007.1|623052_623907_-|FTR1-family-protein
MVVSTALIGLREGLEAALVVVVLLAFLVRTDRRWALPWVWAGVAAAVVVSAALGALLTLGTRELPEATGEAVGGAASIAAVGLVTAMVFWMRSAARGMAGELRGRLDRALSLGPLAVALVGFLGVGREGLETAVFAYATVQGAGDGDTAPLLGWALGLLGAALLGVLVYRGALRIDLARFFRWTGVALVLVAAGILAYGLHELQEAGVLPGEDLPAFDVSGAVDPGAWYAVLLRGVLNVTPAMTVLQVAAWVGYVGVVLPLFLRPARPAAGGSRLGAERTAVRA
>NZ_CP053707.1|WP_173027008.1|624063_625443_-|HAD-IB-family-hydrolase
MAGAAIFDLDRTLLQGGTGPLLSRAMYDLGVVTRRLPGEGLLFKAFDLIGETLPSIALARQATLVARGRAGDAFDEAATAAAETISAVVHPFALALIEQHRAAGRPVVLATTTPEHLVRPLAERLGVDHVVATRYALTEDGRFSGDLEGPFVWSRGKLDAVRAWAAREDIDLAESFAYSDSIYDLPLLSAVGTPAAVNPDPRLTVYALARGWPIVHFDVSPGVVKIPVVGVELQRLLFLASPPLLTPYARFDVAGTENVPRTGPAILVGNHRSYFDVPAMIQMMRRTGRTGRVLAKKELFDVPVVGALATALGGIAVDRGGAGQESFETAAVALEAGELVCLLPQGTIPRGERFYDPVLKGRTGAARLAAATGAPVIPFGIWGSEKVWPRSSPAPRMLALTDPPTVRVRVGEPVEGLGGTPAADTERIMAAIVDCLPPEARERRTPTAEEVALATPRGR
>NZ_CP053707.1|WP_173027009.1|625476_626304_+|patatin-like-phospholipase-family-protein
MADDGGLTAFVLGGGGVLGATQVGMVRALAEAGVVPDLVLGTSIGALNGAFVAADPTPAGAARLAEVWEAVVREGVFVENPVRQAARAARSRTHLLSNAPLRHVIDAYLPVSTFEELAVPFQCVAARIEDSSAAWFDTGGLTWPVVASCSVPGLFPPVVIDGWSHLDGGLVHSIPVGRALALGATRVFVLQVGRVEQPLAPPRRPWEVGTVAFEIARRHRYVHEMASVPPEVETHVLPSGAASTPNVSLREARSSRMRERERQAYEASAEYLAGL

Crispr_ID: NZ_CP053707_5

• CRISPR_ID: NZ_CP053707_5
• CRISPR_location: 687745-687828
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP053707_5

Consensus_repeat	Method
TGCCGGCCCTCCGCAACCACCGTGCAC	CRISPRCasFinder

spacers of NZ_CP053707_5

>5.1|687772|30|NZ_CP053707|CRISPRCasFinder
AAGTCGTCGAAAGCGGCGATTGGCGCACGC

CRISPR arrays and Neighbor proteins around NZ_CP053707_5

CRISPR arrays

The CRISPR arrays of NZ_CP053707_5

>merge|NZ_CP053707|5|687745-687828|CRISPRCasFinder
TGCCGGCCCTCCGCAACCACCGTGCACAAGTCGTCGAAAGCGGCGATTGGCGCACGCTGCCGGCCATCCGCAACCACCGTGCAC

>NZ_CP053707|5|3|687745-687828|CRISPRCasFinder
TGCCGGCCCTCCGCAACCACCGTGCAC	AAGTCGTCGAAAGCGGCGATTGGCGCACGC
TGCCGGCCATCCGCAACCACCGTGCAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053707.1|WP_173027066.1|689373_690939_+|M20/M25/M40-family-metallo-hydrolase	unknown	unknown	gnl|CDD|349924
NZ_CP053707.1|WP_173027068.1|693423_693762_-|rhodanese-like-domain-containing-protein	unknown	unknown	gnl|CDD|238089
NZ_CP053707.1|WP_173027067.1|691022_692681_-|alkaline-phosphatase-D-family-protein	unknown	unknown	gnl|CDD|226070
NZ_CP053707.1|WP_173027071.1|695886_696660_-|GAF-and-ANTAR-domain-containing-protein	unknown	unknown	gnl|CDD|198080
NZ_CP053707.1|WP_173029967.1|693005_693320_+|QacE-family-quaternary-ammonium-compound-efflux-SMR-transporter	unknown	unknown	gnl|CDD|224987
NZ_CP053707.1|WP_173027064.1|686103_686643_+|PAS-domain-containing-protein	unknown	unknown	gnl|CDD|238075
NZ_CP053707.1|WP_173027061.1|683149_684445_-|O-acetylhomoserine-aminocarboxypropyltransferase/cysteine-synthase	unknown	unknown	gnl|CDD|225428
NZ_CP053707.1|WP_173027058.1|680000_681221_-|deoxyribodipyrimidine-photolyase	unknown	unknown	gnl|CDD|223492
NZ_CP053707.1|WP_173027060.1|682676_683153_-|CoA-binding-protein	unknown	unknown	gnl|CDD|224745
NZ_CP053707.1|WP_173027062.1|684449_684968_-|OsmC-family-protein	unknown	unknown	gnl|CDD|376823
NZ_CP053707.1|WP_173027059.1|681261_682521_-|PHB-depolymerase-family-esterase	unknown	unknown	gnl|CDD|273828
NZ_CP053707.1|WP_173029966.1|686999_687638_+|hypothetical-protein	unknown	unknown	gnl|CDD|206779
NZ_CP053707.1|WP_173027070.1|694711_695863_-|DUF2183-domain-containing-protein	unknown	unknown	gnl|CDD|227187
NZ_CP053707.1|WP_173027056.1|677892_678471_+|DUF664-domain-containing-protein	unknown	unknown	gnl|CDD|368218
NZ_CP053707.1|WP_173027072.1|696753_697521_+|fructosamine-kinase-family-protein	unknown	unknown	gnl|CDD|225547
NZ_CP053707.1|WP_173027069.1|693812_694673_-|Fpg/Nei-family-DNA-glycosylase	unknown	unknown	gnl|CDD|223344
NZ_CP053707.1|WP_173027073.1|697713_698412_+|dienelactone-hydrolase-family-protein	unknown	unknown	gnl|CDD|223489
NZ_CP053707.1|WP_173027063.1|685140_685986_-|phosphatidylserine-decarboxylase	unknown	unknown	gnl|CDD|234591
NZ_CP053707.1|WP_173027065.1|687890_689105_-|ATP-binding-protein	unknown	unknown	gnl|CDD|379062
NZ_CP053707.1|WP_173027057.1|678587_679997_+|HNH-endonuclease	unknown	unknown	gnl|CDD|238038

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP053707.1|WP_173027066.1|689373_690939_+|M20/M25/M40-family-metallo-hydrolase	gnl|CDD|349924	cd05675, M20_yscS_like, M20 Peptidase, carboxypeptidase yscS-like. Peptidase M20 family, yscS (GlyX-carboxypeptidase, CPS1, carboxypeptidase S, carboxypeptidase a, carboxypeptidase yscS, glycine carboxypeptidase)-like subfamily. This group contains proteins that have been uncharacterized to date with similarity to vacuolar proteins involved in nitrogen metabolism which are essential for use of certain peptides that are sole nitrogen sources. YscS releases a C-terminal amino acid from a peptide that has glycine as the penultimate residue. It is synthesized as one polypeptide chain precursor which yields two active precursor molecules after carbohydrate modification in the secretory pathway. The proteolytically unprocessed forms are associated with the membrane, whereas the mature forms of the enzyme are soluble. Enzymes in this subfamily may also cleave intracellularly generated peptides in order to recycle amino acids for protein synthesis.	1.65111e-82
NZ_CP053707.1|WP_173027068.1|693423_693762_-|rhodanese-like-domain-containing-protein	gnl|CDD|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	5.37414e-27
NZ_CP053707.1|WP_173027067.1|691022_692681_-|alkaline-phosphatase-D-family-protein	gnl|CDD|226070	COG3540, PhoD, Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism].	6.30891e-146
NZ_CP053707.1|WP_173027071.1|695886_696660_-|GAF-and-ANTAR-domain-containing-protein	gnl|CDD|198080	smart01012, ANTAR, ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins. The majority of the domain consists of a coiled-coil.	9.08221e-17
NZ_CP053707.1|WP_173029967.1|693005_693320_+|QacE-family-quaternary-ammonium-compound-efflux-SMR-transporter	gnl|CDD|224987	COG2076, EmrE, Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism].	1.33215e-20
NZ_CP053707.1|WP_173027064.1|686103_686643_+|PAS-domain-containing-protein	gnl|CDD|238075	cd00130, PAS, PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction.	3.58235e-10
NZ_CP053707.1|WP_173027061.1|683149_684445_-|O-acetylhomoserine-aminocarboxypropyltransferase/cysteine-synthase	gnl|CDD|225428	COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism].	0
NZ_CP053707.1|WP_173027058.1|680000_681221_-|deoxyribodipyrimidine-photolyase	gnl|CDD|223492	COG0415, PhrB, Deoxyribodipyrimidine photolyase [DNA replication, recombination, and repair].	1.68457e-18
NZ_CP053707.1|WP_173027060.1|682676_683153_-|CoA-binding-protein	gnl|CDD|224745	COG1832, COG1832, Predicted CoA-binding protein [General function prediction only].	1.37195e-51
NZ_CP053707.1|WP_173027062.1|684449_684968_-|OsmC-family-protein	gnl|CDD|376823	pfam02566, OsmC, OsmC-like protein. Osmotically inducible protein C (OsmC) is a stress -induced protein found in E. Coli. This family also contains a organic hydroperoxide detoxification protein that has a novel pattern of oxidative stress regulation.	6.78275e-21
NZ_CP053707.1|WP_173027059.1|681261_682521_-|PHB-depolymerase-family-esterase	gnl|CDD|273828	TIGR01840, poly3-hydroxybutyrate_depolymerase_A_precursor, esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi. [Fatty acid and phospholipid metabolism, Degradation].	1.07074e-70
NZ_CP053707.1|WP_173029966.1|686999_687638_+|hypothetical-protein	gnl|CDD|206779	cd11386, MCP_signal, Methyl-accepting chemotaxis protein (MCP), signaling domain. Methyl-accepting chemotaxis proteins (MCPs or chemotaxis receptors) are an integral part of the transmembrane protein complex that controls bacterial chemotaxis, together with the histidine kinase CheA, the receptor-coupling protein CheW, receptor-modification enzymes, and localized phosphatases. MCPs contain a four helix trans membrane region, an N-terminal periplasmic ligand binding domain, and a C-terminal HAMP domain followed by a cytoplasmic signaling domain. This C-terminal signaling domain dimerizes into a four-helix bundle and interacts with CheA through the adaptor protein CheW.	5.68461e-24
NZ_CP053707.1|WP_173027070.1|694711_695863_-|DUF2183-domain-containing-protein	gnl|CDD|227187	COG4850, COG4850, Uncharacterized conserved protein [Function unknown].	5.21766e-61
NZ_CP053707.1|WP_173027056.1|677892_678471_+|DUF664-domain-containing-protein	gnl|CDD|368218	pfam04978, DUF664, Protein of unknown function (DUF664). This family is commonly found in Streptomyces coelicolor and is of unknown function. These proteins contain several conserved histidines at their N-terminus that may form a metal binding site.	1.68717e-23
NZ_CP053707.1|WP_173027072.1|696753_697521_+|fructosamine-kinase-family-protein	gnl|CDD|225547	COG3001, COG3001, Uncharacterized protein conserved in bacteria [Function unknown].	5.08999e-49
NZ_CP053707.1|WP_173027069.1|693812_694673_-|Fpg/Nei-family-DNA-glycosylase	gnl|CDD|223344	COG0266, Nei, Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair].	5.13873e-54
NZ_CP053707.1|WP_173027073.1|697713_698412_+|dienelactone-hydrolase-family-protein	gnl|CDD|223489	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism].	9.04669e-50
NZ_CP053707.1|WP_173027063.1|685140_685986_-|phosphatidylserine-decarboxylase	gnl|CDD|234591	PRK00044, psd, phosphatidylserine decarboxylase; Reviewed.	1.74623e-84
NZ_CP053707.1|WP_173027065.1|687890_689105_-|ATP-binding-protein	gnl|CDD|379062	pfam13191, AAA_16, AAA ATPase domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily.	4.39049e-15
NZ_CP053707.1|WP_173027057.1|678587_679997_+|HNH-endonuclease	gnl|CDD|238038	cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and anaredoxins.	6.41896e-11

Protein sequences

>NZ_CP053707.1|WP_173029966.1|686999_687638_+|hypothetical-protein
MIEAESRSKNAVTERLELADRFEETVLAVSQQVAAASTELSATAANLGRYAEDAVGQADAATTTMANLDGASREIENVVGFISSVAAQTKLLALNAQIEAARAGTAGRGFDVVASEVKSLAETTAKSTEDITNQVQEMIAASGRSINAIQSVHGMVRDMSPMVDDLRYAVDGNSSMGDQGYGLDPRVGQGLAQMAEMLRAEVGTFLDVMRRT
>NZ_CP053707.1|WP_173027064.1|686103_686643_+|PAS-domain-containing-protein
MTTRTTPSGVERTFGRDEIIVTKTDLQGRITYANEVFCRVSAFEEAEVLGKPHNIIRHPGMPAGVFKLLWDRLQAGQELFAYVVNMAGDGGHYWVFAHVTPTFDARGSIIGYHSNRRLPSRSALNVIEPLYREIRSHEASFGRATEASAAGLAFLHERLEQVGMTYDEWVWSLATEVAA
>NZ_CP053707.1|WP_173027063.1|685140_685986_-|phosphatidylserine-decarboxylase
MLGRLLIALVSVLPRHALSRGAGWLAGRTLPRRWRPGVLGGFSRVVGADPSEAALPLEEYPSLNAYFTRTLRPGLRPVAAGALVSPVDATVGAWGEVVGGTLVQAKGHDYSLAALLADEEYARAFDGGTYTTLYLSPSDYHRIHAPLDGSVTAATYVPGDLWPVNGAAVANVADLFARNERIVVRMETAGGPVAVVPVGATMVGMTRLAFDDVLHTNARRREVQRRTYDAPHRLEAGDPLGHFEFGSTVVLVCSAGAGAVEPLALGSSVRMGQRIGSAASR
>NZ_CP053707.1|WP_173027062.1|684449_684968_-|OsmC-family-protein
MTDTTTAPDLAPVVAALEEAVTADAANAAALFRVHAVGGDGPTSIRVNRHSFEQDEPAGFGGADSAPGPVDYALAGLASCQIVVFKYWAAKTGVTLDHIAVDVDGDFDFRTMFGFEGGGRPGLTDVRVAVRVSGPEAPERYEELQRLVDAHCPVLDLVAHATPVSTTLTVAS
>NZ_CP053707.1|WP_173027061.1|683149_684445_-|O-acetylhomoserine-aminocarboxypropyltransferase/cysteine-synthase
MTDRTWGFRTRALHAGGPPDPATGARAVPIYQTSSFVFEDTTDAASLFALQKYGSIYSRIGNPTVAALEERMASLEGGIGAVAAASGLAAEFLVFAALTGAGDHVVAAGSLYGGTLTQLDVTLRRFGVETTFVRGTDPADYAAAITPSTRCVFVEVVANPSGDVADLAGLAEVAHAAGIPLVVDATTVTPWLCRPLEHGADIVVHSATKFLGGHGTTLGGVVVEGGRFDWGNGKFPRMTEPVPSYGGIEWWGNFGEYGFLTQLRSEQLRDVGPALSPHSAFLLLQGVETLPQRMDAHLANAHEVARWLAADPRIGWVRWAGLPDHPHHERAQRYTPKGPGAVFSFGVRGGREAGARFIEALRLCSHLANIGDARTLVIHPASTTHQQLSAAQLEAAGVGEDLVRISVGLEDVEDILWDLDQALAAASRSGS
>NZ_CP053707.1|WP_173027060.1|682676_683153_-|CoA-binding-protein
MSAGWSSPSAQERRAVLERTHSVAIVGASAKPSRASYFVASYLLSSSDLRVFFVNPVVDEILGHPVYPSLTALPEPPDLVDVFRRPSEVPAVLDEAIEVGAGSFWLQLGLWDEDVARRGTEAGLTVVMNRCLKIEHARFAGGLHLAGFDTGVITSRRR
>NZ_CP053707.1|WP_173027059.1|681261_682521_-|PHB-depolymerase-family-esterase
MTSTPSTARANALGRSLVLLVALAVLGAVGLVVTTSPPARAAGLTQVTGFGSNPGALTMYSYRPDGLPSGAPLVVELHGCTQNASTYFANSGWREMADRHGFALVLAQQSSSNNSSSCFNWFQASDTARGQGEALSIKQMTDFAVSSYGLDSSRVYVTGLSAGAAMTAVMLATYPDTYAGGSINAGLPYRCASSTLDAFSCMNPGVDKSPSAWGDLVRAASPGYTGPRPLVSIWQGTSDTTVAPMNAGELRDQFTNVAGVSQTPTSTGTVASGVTVEDFAGRVRVTRVQGMAHGTAVDPGTGPAQCGTAGAYFIDTSVCAASQDVRFFGLDGGGTGPTPTPTATPTTSPTASPTPTPTPTATATPTCVTATNYAHVTAGRAYQSGGYAYATGSNQNLGLSNTFYSSTLRQTSTGYWEKC
>NZ_CP053707.1|WP_173027058.1|680000_681221_-|deoxyribodipyrimidine-photolyase
MRLPTPPPPGGDDPVAWVREHLGHLVREGADGTRRGGHVGGQTAADTALATLDVSGYASRRSTVLPAERRGASRMSPYIRHNLVTLREAWDAVADAPARDRTKYRDELLWQEYARHLYARVGRALGRPLRREQPRTPDRWPTPWPDEMACMAATTAELVEDGWLVNQTRMWLASQWAVRAGADWRVGEDVFFAHLLDGSRAANRLGWQWTVGTGSGRPYGFSRWQVEKRAPSLCRSCPLEQACPVQGWPEESVGAPADGPPLGRGPVPAGPAEVEGRGAEEVWLTAESLGDADPALAADPDRPAVFVLDEPLLAGLRLSGKRLVFLAETLGDLATRRPLEVRLGDVAEELAGRRLAVTHAPVPGFARRATAVDPVEVHPYPWLVRPRSVPVQSFTAWRRAVGAPRS
>NZ_CP053707.1|WP_173027057.1|678587_679997_+|HNH-endonuclease
MVTTGTAQDLLDATRRAHDALAPVRPSGVRTGTRDEWVEALGALQSLLNEATALQDEVVVELAALEPEWAEDGTVRDVRRALDAPAIVSGVLCLSAVAAEQRVRDAVRRAADGPEGTPTSTGLGGLHTAMTQGRLDGHRAHVVSGELEECPAEVRATVVAALDPWLDREDGSRLRRRVRRMLAAIDPDLLRQRARRAREASGLRRWVDEPGVDTWLGTFPSEEACGAWAAVGALAQRYLEDGVCARIDRARAKALTDLVLQQSTVTTTVVEHHAHPLTGALVDDGDALATPAYRPGAALAGLVRARDRHCRFPGCSVAARWCDLDHVVPWPAGPTSAANLVCLCRRHHRTKQRPGWRTLLAPDGTYTVTDPTGRVRSTDPPDHRADPALSDLPDPDHSPPPACPPRVVVPDGPHSDLEHALESRLGGERWGRAACRVEVHRPARVSTVVTTDDHPRRPRPTGWPDTPPL
>NZ_CP053707.1|WP_173027056.1|677892_678471_+|DUF664-domain-containing-protein
MSTTPPPWEPPLAGSEAEQLLGSLDRMRATFRYKVDGLDAEGLRATIPSSTLSLAALLKHLASVEDFYSTQRLSGTPMPDVWDDNGWDDEDDWEMTSAASDPPEDLYALYDGAVERNRARVREAVAERGLGGAAHASDGEGRHASIRRLLFDLLEEYGRHTGHADLLREAVDGRVGEDPSADWHLPEAWTGA
>NZ_CP053707.1|WP_173027065.1|687890_689105_-|ATP-binding-protein
MDPIRNPYAPGAGQRPPELAGRDEQLDAFDVVLERVARGRPERSVVLTGLRGVGKTVLLNALRSAAVRAGWGTGKLEARPDQSLRRPLSSALHQAVRELGPAGGAGDHALGVIRSFAQREPDTGRTARSAPKLRDRWNPGITVPAVSGRADSGDVEIDLVELLSDLGGTAADTGRGIAVFIDEMQDLGPEDVSALCAAAHEISQTGLPLIVVGAGLPHLPAVLSASKSYSERLFRYSRIDRLDRDAAAAALVRPAAEEGAEYEPDALAAMYLATGGYPYFIQAYGKAVWDRAPGSPITVADVEVAAPEAEAELAVGFFGSRFERATPGEREYLRAMAEVAAAAGGTDDADAVPTSDVAAHLGRKPQSLSPARDALLKKGLIYSGERGLIAFTVPHFGRYLRDHT
>NZ_CP053707.1|WP_173027066.1|689373_690939_+|M20/M25/M40-family-metallo-hydrolase
MTDHASTGPSSTTSAGGDAARRLLGRRALLAGAGGAATLAATGLVSGSGAAARPAALPATGAAPTPLALLRRMLSFDTQNFGQGGKTRAHAEWLKGVWDAAGVRSEIIPTPQPDNVHLLARIKGTTSARPLLLLGHSDVVPVERENWSVDPFGAVVKGGEIYGRGALDMKGANAASIAGLLRHVQQGHRFERDIIVLTDCDEEAGSYGSGWLAQNHWDKLDAGMVLTEGGWFLAQTDGTTPMLVTVTRQDKVYFNLDLYASGTATHSSKPIPDNAIVSLSRAVADIGDDLAPVHLTKVTRTYFSALARATDDRRLENAIRMMLSTRSTKVRERAAALVVRYSDYPYLHSALLRTTTAFVIEDAGYKENVIPSEAHVRVNCRGIPGGEKPRDFVARLRRTLRGRDIEVRLGAPEGVSEADYLDQLDETWATEPASLDTPLYDAIELAARRTYPRAEFAPALFEAGTSLGPWRERGIPGYGVYPYVIDNDQLIGMHGNDERIYVEALERGTDFMYRVFDGFRA
>NZ_CP053707.1|WP_173027067.1|691022_692681_-|alkaline-phosphatase-D-family-protein
MTTTASRRTLLRVGAVAAAGATTTLAGPRADARPTAAAVLPRTDPFTLGVASGDPSPDGFVLWTRLAVEPLAADGLGGMPDRTFVVGWQVARDERFRQVVRSGVVAARPARAHAVHVEVGGLLPGREYFYRFRLGRFVTRTGRATTAPAPWQSPESLTMAFASCSNLPAGWFTAYGHLADERPDLVLHLGDYQYEGPGDGVGRHHAGPETTTLAGYRQRQAQYKTDPDLQAAHAAAPWLAVWDDHEVDNNYADDVPEKVAETPGFLERRAAAYRAYYENMPLRRTSVPRGPDLQMFRRVAWGSLATFHMLDTRQYRSDQACGDGYEDCPDAADPARSLPGHAQERWLLDGFRRSRARWDLLGQQVFFGRRDNDPGAATTVSMDAWDGYPASRERVTRGWVDAGVRNPVVLTGDVHAHWACDLHLDAGDPDRVVGSELVTSSITSGGDGHDEADGAHPWAAWNPDLRFWTNLRGYVSTTITRDELTARFRCVPVVTTPGADVFTRATFVLGDRERGLVQVQDAPMASAVARGAGRSDAEKIADTVREETHGSS
>NZ_CP053707.1|WP_173029967.1|693005_693320_+|QacE-family-quaternary-ammonium-compound-efflux-SMR-transporter
MSWVVLVLSGVLEAVWATALGRSEGLSRPVPAVVFVLALAASMGGLGWAMRELPVGTAYAVWVGIGAVLTVSVAMATGEEPLSLVRVLLVLGIVGCVVGLKLVS
>NZ_CP053707.1|WP_173027068.1|693423_693762_-|rhodanese-like-domain-containing-protein
MSDFPDVPVSAVPDDATFLDIREQDEWDRGHAPHALHIPMAELPQRLDELAPFLDRDEPLVVTCRSGGRVARVLPWLAQQGYEVANLEGGMRAWQDAGRPLEATDGAQPQVP
>NZ_CP053707.1|WP_173027069.1|693812_694673_-|Fpg/Nei-family-DNA-glycosylase
MPELPEVQALADFLRQRTDGLVVTGVELGSFHVLKTFTPPPDALVGAPVDGVSRHGKFLDLDCGGTHLVFHLARAGWLRWSDAMPATVLRPGKSPIALRVRFDDSSGFDLTEAGTQKRLAAYVVNRVEDVPGIVSLGPDPLADAFTEEVFAGILAAHRMQVKGLLRDQSIVAGVGNAYSDEVLHVAKLSPFAIAAKLDAEQVTRLYAALRETLAHAVATASGKPAKELKDAKRAGMRVHGRTGETCPECGDVVREVSFADSSLQYCATCQTGGKPLADRRTSKFLK
>NZ_CP053707.1|WP_173027070.1|694711_695863_-|DUF2183-domain-containing-protein
MARPHAAALVEDAYTSRKARFLEARGWVTRIVPSTGYGSTTQLRVFGRVIHTRGRPEDEPTEPTYAARLRAVESETRGWRAFFATPAVEEPVTVRVNERLVSTRTDRGGFIDLVVRGHGLTPGWHQVFLSSPRAETIDVPVLVVGSQVTHGIISDIDDTVLSTSLPRPMIAAWNTFLRSEGARRPVAGMATMYRELLAAHPEAPVVYLSTGAWNTAPQLTRFLQRNGYPAGPMLLTDWGPTNTGWFRSGQEHKQAQLHRLARELPNVRWLLVGDDGQHDPRLYTEFAAARPDRVRGVAIRELTAGEQVLSHVIPVATDDIAPAPTERLEVPVVRGPDGYELTRRVRGLWEGGVPQRTLREYASTVVTSPDDPPDYLVEDPDER
>NZ_CP053707.1|WP_173027071.1|695886_696660_-|GAF-and-ANTAR-domain-containing-protein
MTNTLTIPPPEDEDTDQGALMARLSDEVSGVLASMGELSDYLERVVHAVRRAIDGCDEVGVTVLSNDRPHTAAYTTVQTLEIDAVQYALDEGPCLEAARTRAEQHVSDLCTDDGRWPLFAQASREDGLRSLYAVPLVSGDQCVGALNLYAWATDAFDGLDAALVRVAASRCADAIVAVTALDGMRELAGQLEQAMASRAVIEQAKGVIMALRGVPEHDAFEILRKTSQDRNVKVRVLAEDVVAGALRRGPATGGASA
>NZ_CP053707.1|WP_173027072.1|696753_697521_+|fructosamine-kinase-family-protein
MPRRYRKTSTAAPAGYFAWEAAGLRWLGAAGGAAVAEVLDAGPHHLELPLLDAAPPTPRAAEDLGRGLATLHAVGAGGWGAGPDGWDGDGWLGPLSEPLPLRLGRWGTWGAFYGQARVLPLARLGRERGTFDDADVAVLERLAERVGSGAFDTPDAPARLHGDLWSGNVVWTREGAVLIDPAAHGGHREGDLALLALFGAPGLERLLAAYDEAAPLADGWRSRVQLHQVHPLLLHAVLFGGGYVRQALDAARRYL
>NZ_CP053707.1|WP_173027073.1|697713_698412_+|dienelactone-hydrolase-family-protein
MSERVDVTLPDGTMPAHRWLPEGGSGPGILLLQEIFGVSPYIRRRAEDLAAQGYVVLAPEIFWRLGVAEVADGPAMLEEAMGLLGRLDWDAAVADATQALRALRHDDAVTGGVGVVGFCFGGGLGYAVVAQSPADALVSFYGSALPQLVEAVPSVSTPSLHVFGESDAYLPMDVVERITTAVTSGDAPTEVVTYPGADHAFDNPDFVNHDAEASAAAWSRTEDYLARVLPTG

Crispr_ID: NZ_CP053707_6

• CRISPR_ID: NZ_CP053707_6
• CRISPR_location: 857903-858014
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP053707_6

Consensus_repeat	Method
GTGCACGAATCGTCGAATGTGTCGATTG	CRISPRCasFinder

spacers of NZ_CP053707_6

>6.1|857931|56|NZ_CP053707|CRISPRCasFinder
ATGCACGCGCCGAGCCGGAGCCGGCGGACCTCGAACCGCAGTCGCCGGCCGCGAGC

CRISPR arrays and Neighbor proteins around NZ_CP053707_6

CRISPR arrays

The CRISPR arrays of NZ_CP053707_6

>merge|NZ_CP053707|6|857903-858014|CRISPRCasFinder
GTGCACGAATCGTCGAATGTGTCGATTGATGCACGCGCCGAGCCGGAGCCGGCGGACCTCGAACCGCAGTCGCCGGCCGCGAGCGTGCAGGAATCGTCGAATGTGTCGATTG

>NZ_CP053707|6|4|857903-858014|CRISPRCasFinder
GTGCACGAATCGTCGAATGTGTCGATTG	ATGCACGCGCCGAGCCGGAGCCGGCGGACCTCGAACCGCAGTCGCCGGCCGCGAGC
GTGCAGGAATCGTCGAATGTGTCGATTG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053707.1|WP_173029990.1|856640_857414_+|serine/threonine-protein-phosphatase	unknown	unknown	gnl|CDD|223704
NZ_CP053707.1|WP_173029991.1|875551_876112_-|PadR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224609
NZ_CP053707.1|WP_173027185.1|860413_861130_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP053707.1|WP_173027181.1|854526_856008_+|CCA-tRNA-nucleotidyltransferase	unknown	unknown	gnl|CDD|131739
NZ_CP053707.1|WP_173027187.1|868198_869170_+|MoxR-family-ATPase	unknown	unknown	gnl|CDD|223786
NZ_CP053707.1|WP_173027176.1|847117_847444_-|thioredoxin	unknown	unknown	gnl|CDD|200072
NZ_CP053707.1|WP_173027189.1|870758_873287_+|hypothetical-protein	unknown	unknown	gnl|CDD|376628
NZ_CP053707.1|WP_173027186.1|861797_868154_+|fibronectin-type-III-domain-containing-protein	unknown	unknown	gnl|CDD|238020
NZ_CP053707.1|WP_173027190.1|873407_874052_-|response-regulator-transcription-factor	unknown	unknown	gnl|CDD|225107
NZ_CP053707.1|WP_173027178.1|850128_852198_-|hypothetical-protein	unknown	unknown	gnl|CDD|270875
NZ_CP053707.1|WP_173027188.1|869166_870762_+|DUF58-domain-containing-protein	unknown	unknown	gnl|CDD|224635
NZ_CP053707.1|WP_173027179.1|852273_853881_-|murein-biosynthesis-integral-membrane-protein-MurJ	unknown	unknown	gnl|CDD|240528
NZ_CP053707.1|WP_173027191.1|874379_875471_-|inositol-3-phosphate-synthase	unknown	unknown	gnl|CDD|132491
NZ_CP053707.1|WP_173026453.1|848601_849441_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP053707.1|WP_173027182.1|856110_856611_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP053707.1|WP_173027177.1|849526_850117_-|RNA-polymerase-sigma-factor-SigM	unknown	unknown	gnl|CDD|236604
NZ_CP053707.1|WP_173029989.1|847542_848481_-|thioredoxin-disulfide-reductase	unknown	unknown	gnl|CDD|273540
NZ_CP053707.1|WP_173027180.1|853928_854420_-|NUDIX-hydrolase	unknown	unknown	gnl|CDD|239645
NZ_CP053707.1|WP_173027184.1|858909_860367_+|serine/threonine-protein-kinase	unknown	unknown	gnl|CDD|270916
NZ_CP053707.1|WP_173027192.1|876386_878591_+|penicillin-binding-protein	unknown	unknown	gnl|CDD|223815

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP053707.1|WP_173029990.1|856640_857414_+|serine/threonine-protein-phosphatase	gnl|CDD|223704	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms].	5.6071e-69
NZ_CP053707.1|WP_173029991.1|875551_876112_-|PadR-family-transcriptional-regulator	gnl|CDD|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	2.21295e-17
NZ_CP053707.1|WP_173027192.1|876386_878591_+|penicillin-binding-protein	gnl|CDD|223815	COG0744, MrcB, Membrane carboxypeptidase (penicillin-binding protein) [Cell envelope biogenesis, outer membrane].	3.66929e-163
NZ_CP053707.1|WP_173027181.1|854526_856008_+|CCA-tRNA-nucleotidyltransferase	gnl|CDD|131739	TIGR02692, putative_tRNA_nucleotidyltransferase, tRNA adenylyltransferase. The enzyme tRNA adenylyltransferase, also called tRNA-nucleotidyltransferase and CCA-adding enzyme, can add or repair the required CCA triplet at the 3'-end of tRNA molecules. Genes encoding tRNA include the CCA tail in some but not all bacteria, and this enzyme may be required for viability. Members of this family represent a distinct clade within the larger family pfam01743 (tRNA nucleotidyltransferase/poly(A) polymerase family protein). The example from Streptomyces coelicolor was shown to act as a CCA-adding enzyme and not as a poly(A) polymerase. [Protein synthesis, tRNA and rRNA base modification].	0
NZ_CP053707.1|WP_173027176.1|847117_847444_-|thioredoxin	gnl|CDD|200072	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport].	4.13271e-45
NZ_CP053707.1|WP_173027189.1|870758_873287_+|hypothetical-protein	gnl|CDD|376628	pfam01841, Transglut_core, Transglutaminase-like superfamily. This family includes animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterized transglutaminase, the human blood clotting factor XIIIa'. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase, it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease.	1.06465e-08
NZ_CP053707.1|WP_173027190.1|873407_874052_-|response-regulator-transcription-factor	gnl|CDD|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	7.02154e-22
NZ_CP053707.1|WP_173027178.1|850128_852198_-|hypothetical-protein	gnl|CDD|270875	cd13973, PK_MviN-like, Pseudokinase domain of the peptidoglycan biosynthetic protein MviN. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. This family is composed of the mycobacterial protein MviN and similar proteins. MviN is an integral membrane protein that is essential for growth and is required for cell wall integrity and peptidogylcan (PG) biosynthesis. It comprises of 14 predicted transmembrane (TM) helices at the N-terminus, followed by an intracellular pseudokinase domain linked through a single TM helix to a carbohydrate binding extracellular domain. Phosphorylation of the MviN pseudokinase domain by the PG-sensitive serine/threonine protein kinase PknB recruits a forkhead associated (FHA) domain protein FhaA, which modulates local PG synthesis at cell poles and the septum. The MviN pseudokinase forms a canonical receptor kinase dimer.	1.00044e-32
NZ_CP053707.1|WP_173027188.1|869166_870762_+|DUF58-domain-containing-protein	gnl|CDD|224635	COG1721, COG1721, Uncharacterized conserved protein (some members contain a von Willebrand factor type A (vWA) domain) [General function prediction only].	4.16055e-22
NZ_CP053707.1|WP_173027179.1|852273_853881_-|murein-biosynthesis-integral-membrane-protein-MurJ	gnl|CDD|240528	cd13123, MATE_MurJ_like, MurJ/MviN, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli MurJ (MviN) has been identified as essential for murein biosynthesis. It has been suggested that MurJ functions as the peptidoglycan lipid II flippase which is involved in translocation of lipid-anchored peptidoglycan precursors across the cytoplasmic membrane, though results obtained in Bacillus subtilis seem to indicate that its MurJ homologs are not essential for growth. Some MviN family members (e.g. in Mycobacterium tuberculosis) possess an extended C-terminal region that contains an intracellular pseudo-kinase domain and an extracellular domain resembling carbohydrate-binding proteins. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	3.55595e-79
NZ_CP053707.1|WP_173027191.1|874379_875471_-|inositol-3-phosphate-synthase	gnl|CDD|132491	TIGR03450, mycothiol_INO1, inositol 1-phosphate synthase, Actinobacterial type. This enzyme, inositol 1-phosphate synthase as found in Actinobacteria, produces an essential precursor for several different products, including mycothiol, which is a glutathione analog, and phosphatidylinositol, which is a phospholipid.	0
NZ_CP053707.1|WP_173027186.1|861797_868154_+|fibronectin-type-III-domain-containing-protein	gnl|CDD|238020	cd00063, FN3, Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.	2.42725e-12
NZ_CP053707.1|WP_173027187.1|868198_869170_+|MoxR-family-ATPase	gnl|CDD|223786	COG0714, COG0714, MoxR-like ATPases [General function prediction only].	4.82296e-89
NZ_CP053707.1|WP_173027177.1|849526_850117_-|RNA-polymerase-sigma-factor-SigM	gnl|CDD|236604	PRK09643, PRK09643, RNA polymerase sigma factor SigM; Reviewed.	5.13394e-64
NZ_CP053707.1|WP_173029989.1|847542_848481_-|thioredoxin-disulfide-reductase	gnl|CDD|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	1.06617e-154
NZ_CP053707.1|WP_173027180.1|853928_854420_-|NUDIX-hydrolase	gnl|CDD|239645	cd03673, Ap6A_hydrolase, Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.	5.03353e-51
NZ_CP053707.1|WP_173027184.1|858909_860367_+|serine/threonine-protein-kinase	gnl|CDD|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	9.40716e-72

Protein sequences

>NZ_CP053707.1|WP_173029990.1|856640_857414_+|serine/threonine-protein-phosphatase
MLVRSGRATDVGRVREHNEDSVIAASRVFAVADGMGGHAAGEVASRIVVETLGELEEHPPTSPDDVSAALREANRRILETVNADPAKRGMGTTAAGVVVVDTGGREHWVVFNVGDSRVYRLADHRMHQVTRDHSEVRELVDAGLLDPSEVATHPLRNVITRSLGTDPGPRVDTWVLAPTPGERFVICSDGLSNELDDRDIMVLARQYADPQTAADELVGAAVRAGGRDNVSVVVVAVDAGEDDDDADTAPRAGLHRP
>NZ_CP053707.1|WP_173027182.1|856110_856611_+|hypothetical-protein
MPVVAHPGPSSPAPPALRLEVPDSWVAAPAGDALLRVAGPGSAGGEVVVEVRHRVEAAGTSAEVLVAALAAEAAGSSGEVEEAFVVEVGGREWSAHNVSRDGSGGDVVEVHLVAVLAAGEEAVTAVHVRGRVAGEGLDADYDALQQVLETVTVAGSDSGSGDGAGA
>NZ_CP053707.1|WP_173027181.1|854526_856008_+|CCA-tRNA-nucleotidyltransferase
MALVSDRQPPAALLREAVAHLAPSLPVLTDLGQRFAAAGHDLALVGGPVRDAFLGRTSNDLDLTTSARPDDTEAILAAWGSATWDMGRAFGTIGARRGDVVVEVTTYRADAYDGVTRKPVVAFGDTLEDDLVRRDFACNAMALRLPDLAFVDPHGGLEDLQARLLRTPTTPQVSFGDDPLRMMRAARFVSQLGFVPAPEVLTALREMAASIDIVSAERVRDELVKLLLGAHPRAGLELLVQSGIAAMVLPELPALQLEVDEHHRHKDVYEHSMTVLEQAIDLEGPADGPPESVPGPDLVLRLAALLHDIGKPATRRFEDGGGVSFHHHEVVGAKMSAKRMKALRFDKETTKAVARLVELHLRFHGYGDGAWTDSAVRRYVTDSGDLLPRLHRLTRADCTTRNLKKARRLSRAYDELEERIEVLTQEEELKAVRPELDGHAIAQALGIRPGPVLGRAYQFLLALRLDEGPLGPEVARERLLAWWAQQPESGAQG
>NZ_CP053707.1|WP_173027180.1|853928_854420_-|NUDIX-hydrolase
MSHAAADPAGSPPRRLPAVEERSAGGVVVDVHEGRARIAVIARRNRAGRVEWCLPKGHIEGEETLPETAVREVEEETGIEGRVLIELGTIDYWFAAGDRRIHKYVHHYLLEATGGHLTIEKDPDHEAIDVAWLALEDAHRHLTFPNERRIARLAWQRLAGDAG
>NZ_CP053707.1|WP_173027179.1|852273_853881_-|murein-biosynthesis-integral-membrane-protein-MurJ
MAAGTLASRVAGMLRALLLTSVIGGTGLAAEAFTVANTLPNSLYLLLAGGTLNAVLVPQIIRARTRPDAGEDFVNRLITAAIALFVVATVVLTVASPLLVRLYFRTSDAQALQLGTVFAFVCVPQILFYGLYTIFGQVLNANGRFAAFTWAPLVANVVAIGGLGWFVLAGLPVRAEPGAWTPEMIAILAGTSTLSIVLQAAALVPPLRRMGFRYRPRWGFKGHGFEGVSDVAKWSFASIVVVQVGFWVTTQVLTDAADKGKELGLPAAGIAAFSPAQLLMMLPHGIVTVSLVTALYTQLSEAASRGDHETVMRHHEQGLRMPAPLLLPVVALVLATVPVVTATLFFRNPLSDTQAIAAVLVGLFGGILPLGWVYLNDRVFYAQQQTFWSFRTQCVVTGISMAIAWFASTLPPQRTATVLAFGQTTAYVVGAVVGWLVLRRQHGRVGLRGAARVYVRVGVPAVVTAALLGVAIHLLFPDFGIERGLHTFLLGALVLGVAGVVELAVTWGVAHALGVEEVGRLLDPVARRLRGLRRR
>NZ_CP053707.1|WP_173027178.1|850128_852198_-|hypothetical-protein
MKGVGPGTVLGGRYTAHRRVAQDRGTERWIADDTTLGRRVSVLVVAADDHRTAAFLDAARRAGSVTHPVLLRVLDVGRDDDVAWLVEEEIPDARTLADLVAAGGVPGDEVRRITGEVAAALESARGRGMHHLDLTPDDVLRTADGEVRLRGLEVAAVRAGEDGLEPEEAARRDAVGVVALAYAGLTGLWPLGAGAAGLGAAPRVPGGVASPSEIAAGVPRDLDAICRLTLTDDQGPTSPGDYASQVAPWPSRQVVGRPVQPLFTPEPEVDEADEADAEAGGTSEVEASPQPASDDAHRDDDATATLPVLPAAAGAGAVAAAAGAHHDGARDDEASDDEAPTAEQPAVSSSVDEADDPETTDDAVDADVDDDSDATRVIERPVPPAWVSDEAPAAGAAPTAASADGRVDTDDADETGRASSGAAVTAAMTSVGTSVSSFARRAVDKVTELSPDTRRDPDADDDEDVLSPLVPAEPLTRDQSKLAIGIIITFLVVAVVIGINGVRQIGSNTDLGLDGSSTSGPSASASRSPSASSTVGEDTDDDTGRPEPLAILKVQALDPAGDGSENDSLTPKTYDGDRSTGWNSENYRTDDFGGLKKGLGLVVDLGPNKKPQNVELDIPQNVDLEVWVGPDASLDGATKIGEKTDAKGTLEFPVPEKVSGQYIIVWYTGLHVDADGKRRAWLDEVVVTG
>NZ_CP053707.1|WP_173027177.1|849526_850117_-|RNA-polymerase-sigma-factor-SigM
MTAPDLADLDDATLLARHVAGDGGVAFGELFRRHRDRMFAVAMRTTGQRELAADAVQEAFISAFRRADAYRGDAAVTTWLHRIVVNACLDRLRREKVAVRRAGDLGELDLPDRHDRHASTETALVVREALARLPEGQRTALVLVDMHGMPVAEAAVVLGVAEGTVKSRCFRGREALAAMLRPAEGSSDATEPQGAT
>NZ_CP053707.1|WP_173026453.1|848601_849441_-|hypothetical-protein
MTHPHDETAPVEHDPTGMRALLGSLPDPEPMPGDLVARIEAALAAEARALLTDGSTRDDTPAVRRPGAPDDVVVPLRRRSRWHLVAVAASAVAVLGLGGVVLQSIAPGGVTASLGLAGGSSDSGAASDAADPQAAPETALTLLAEDDALGVVVLESGRGYSTAGLSAQVLRGLPWDRTGRDASGDATASPSGRADVAPEGGSLAGGLGGLSTAAGARACAEGLDVPDADTVVVDIATVDGRPAAVLVATAESGRRTAWAVGRDCTRTDAHVVSGPVLVD
>NZ_CP053707.1|WP_173029989.1|847542_848481_-|thioredoxin-disulfide-reductase
MCPVTSDVRNVIIIGSGPAGWTAAVYAARANLQPLVIEGSVTAGGALMNTTEVENFPGFRDGIMGPDLMENMRAQAERFGAEIITDDVEQVELDGDVKLVRDGMGNEYRAKAVILAMGSAYRELGLPDEKRLSGHGVSWCATCDGFFFRDQDIVVVGGGDSAMEEATFLTKFARSVTVVVRRDELRASRIMAERATANEKIHFAWNSAVDAIHGESKVSGVTLRDTVTGETRELAATGLFVAIGHDPRNELVKGLVDLDAEGYVLTEGRTSKTNVPGVFACGDLVDHTYRQAITAAGSGCAAALDAERFLAH
>NZ_CP053707.1|WP_173027176.1|847117_847444_-|thioredoxin
MGAVSTTTDATFEADVLKSDKPVLVDFWAEWCGPCRAVAPVLEEIARDHGDKVAVVKLNTDENPGITGQLGITSIPTMHVYQGGEIVKTIIGARPKPVLLRELEQFLG
>NZ_CP053707.1|WP_173027184.1|858909_860367_+|serine/threonine-protein-kinase
MTPADAPDIPGLTFVRPLGSGGYADVYLYEQQSPRMNVAVKVLKRQGLTAGIRRQFVDEANTMAQLADHPYIVQVFRSEQTADGGAYLVMKYYPPPNLAQRARAERLTVEEVLRTGVQLASAVETAHRAGIIHRDIKPANVLVSQYGQPGLTDFGIAGRGGHAEDVDEDVGVSVPWSAPEVLYGMSNGDARSDVYSLAATLWHLLVGRSPFEQPGGDNSAYALMPRIRATPVPATGRADVPISLERLLSHAMAKSPDGRPQSAIELARGLQAVEREQRLAPTAVVVLDEQGNTTVAESPVARGGEDQDRTSIRAMSVPSAAAPAPERARVDDDEDEDAPATVSGGVVLGVLAVLVAVTVGVVVWALGRGDDEAPPTPTAAGTLTRTAAPSRAVDYPEQPAIDARGTSSGVTFSWNYVGAEKGDFYRIRLADTEGAVADAEILTVKDGARYTAKAASGETVCAQVQVSRSSGVTSPLSPVRCETAP
>NZ_CP053707.1|WP_173027185.1|860413_861130_+|hypothetical-protein
MGVTVEYCGELFVAPEDRPMTIGRVADVEVDDNPYLHRVFLQVHHEHGLWWLTNVGSTLTATVADKKGLFQAWLSPGARIPLALEAFTVWFTAGPTTYDFDVLVDDTPFVSVETAAESEPEDSGAQTTVGRVSMTPDQKLLVVALCESFLRTTYAGGGQIPSSADAAARLGWTTTKFNRKLDNVCQKLADAGTRGLHGGPGKLASNRKARLVEHALSTRMVTEIDLRLLPEPGSAPTP
>NZ_CP053707.1|WP_173027186.1|861797_868154_+|fibronectin-type-III-domain-containing-protein
MTRVGAARVRDARGRARRRTAGAVVVALVAGGLGYAAVASDGTTVHEADLNDAGVWVSSAQQAKFAKANIPIGQLDTGVATDTGTGGGLDILQDGAAVFGLSTASGELFPLDPPTSTAGDPAATVPAVDEQDGRFTPQPVDLRGGTLALLDPASGKLYAQRVDPRTGTTDLPGVAVGAKPVATVGRGAAVAVGLDGVVHAVSGADGTVTSIRPTPTGFAKPTSTRSALRSPHPDITAVGAAWVAYDPETDRVFTAEKPEGVDAQVTTDGSRLAALQVPGPDADTVVVESAQRAVQVPLDGGLSPGGVVIGERVNRTPGATLVTRPVVLGGCVHAAWAEQTQVFYGANCGRTGDEPTATLPTGSEDPIREGVAFRVNRDLVVLNELDDGGVWDLQDKPTKIDNWDALTPPTRQDDKNQKKDENLVDEATAQQPPKAVDDAEKVRPGRTSKLHVLDNDTDVAGSVLAIDQRDVTAPTLRGASATVSSDGQAIDLSVPAGTENQVLEFSYKVNNGKATSKTAGTVRVRVVGDEVNGPPALRRGGAEIAQRPYPVIAGKRLSVPVLADWRDPENDTLAARADVEGAVVDGGGRVTVTAPGEEGRQPIGYVVSDGRGGSTKGTVNARVLSTSGDSKFVAPRTQPDAVRGVVGKPLQVEPLGNDIAGADPGEPDASLRLRSEVRPVGPLQVDTDLATGTVTVTGNAAGTFELSYSAVTGAGAAPGRIRVDLTAPPEGAPPVSVPDNATLHDQAPAMVDVLANDYSPRGDVLVTAAVETTDDSGWLQPSIYQGRWVRLEARDPAPAGTEGRRGTIRYTVSDGTQRTSGQVEVLQQGPLADSLPLVEDDKATVREGDTVSIPVLDNDTMADGIPLRLDPGSVKVVSKGDAQRAFASGNVVRYVPEATGLRAAKFVTIEYAAYAEGSKERAQTARVRVQVNPLPTKQQVNQAPVARSFTATVTAGDPLTMTIPTFGVDPDGDSVSVTGVVGTDGGPVDLRLGRVVGTGPTTIRYEAFPLAAGTEVITYEVRDRFGATSRAFVRVGVVQPGDPQPPVAVPDEVFAAPGKTVTVKPLVNDLIARGDVVDVQTEGLNPAGELRKWTVDGDDTVRTKVPDDTSALHQLVYGISDGLFDPSRATVLVRPVVGYKNPPVANDDVAAPRPGETSSVVDALANDTDVDSDPATLKIAEVLSPDAQVTADGRVSVKILDHAYSVPYVVVDEDGERAMALIHVPTGANGQPFVVAGSLVKMDPDSSKTVNLADHVRSPRGRVVSVTTASTVSASPAENLSVTLVDNRTLQLTSSNGYVGPAAVMLEVTDQSAVGQTDFGTAYVSVPVQVGPLVPLLRCPDGAVTVTAGGLDRTVDIPTVCHAWLPVGMTFDDVQFETRWKTPADADLRADGQGNRRLTLHADTDAQTSTGTLEISSRGMAQPSSLTVKVVGADAQGPARLRPISVSGLEEGQSRTVDVSGYLDSPLSDPTCAIVRATVESGSGITTSFSGCSLTLTAGERPSPTASIGLVVTDGPRRETSGRVTVTLLGRPDPPRQVQAVADRDAGGQARVRWLPPTYDGGSVVTGYVVRWSGGSSGEQTCSASPCTIPGLTNGQDYTFTVAAVNGIGEGDPSAPSAAVRPDRLPEAVTGVRMVSRGDGTLTIAWDQPVNEGSALRKYVVRLISSTGQTKTQDVAAGTRQATVTGLDNMAEQDVQVQAWNELGAGQFGPAVTMQSAGTPPALPAPKIAASGPGPAADSATLTISWEQGTPNGPPTTGYTLYQQVAGGGWTAVERLAPDRRSTTVVVPYDGREYRYTVTLTNGADLEGPKTNSSSFTSNGVPSDPSVSAATPAADQKIRVTVTVGQPRAASFSVIRWSANGASGTHQCGCAPGSQVSFDIGPLDTSPTQAYAVTVRTENSAGASSNPAGTNATPYGPTLSPSGLNGSNDGTTGATWTWNLPTNGRPVDQVRLSGADTGTFGGGKTSHSISKGPGTYTLTVEAHSDAGWSAPVSRQVTVPNPPPPDPEVFNVHKGPPYRPPNAVGSCTSGNCPRVAFDVRNFPAGGGGWTVSVIRNDGQELFTSSVQFFPSGDGTGTTGETGNTSNWRSTGIVIANGEGPLHVRLCRGGTCHQSADVGW
>NZ_CP053707.1|WP_173027187.1|868198_869170_+|MoxR-family-ATPase
MTVTTDQAAWFSQTFAAMVANVDKAVLGKEHVIRLALTCMLSEGHLLLEDFPGTGKTQLARAMAGTVKGTNSRIQFTPDLLPSDVTGVTIYDPNSKVFEFHEGPIFATIVLADEINRASPKTQSALLEVMEEGHVTVDKTRHSVGEPFMVIATQNPIEQAGTYRLPEAQLDRFLMKTTLGYPDHDATVRVLRDAATRDRTRALEPVVTAQVVSDMAELADGVHVDDAILEYVSRLAEETRRHVSIRLGLSVRGCLAFVRCAKTWAISQGRDHVVPDDVKLLAQPVLNHRLLVTAEAQFAGITVEQVIDQILAEVAPPTERVPA
>NZ_CP053707.1|WP_173027188.1|869166_870762_+|DUF58-domain-containing-protein
MSDPTGRPEDAESTVRRSDLTPPSAPRGAGGGAARPVDDAADGATSRPARSARRPGGGSKRPRTGRRLTLPRLRTTGPGRDGAGRSRASARPTSRAQTRADGSTRTVTLPRVQVPSALTDTGARILVLTGERIKPIADQTRRVWHPVVEVLRWVSPLGWTVLAVGLLAWWMTARFAWAELGMVAAACLVLVLACVLLALDRAKVRIRADVEPARVTVGDPATGRIAVTNTPKRGMLPLLVELPVGRTAARFTLPALAPGRTHEELFVVPTSRRGVVPVGPATTVHGDPFGLVRRTVQWTERSELYVHPRTISLDNLGAGLLRDLEGEVTPDLSMSDLAFHALREYQAGDDRRYVHWRSSAKHGRLLVRQFLDTRRSHLAIVVDTTPEVYANDEDDVELAISCAASLALRSILDEQDTTVVCHGETASRTTAPLTLDALARAEVGLLDLYGSVGQAAALAPDASIAVLVTGVERPFIQVQRTLAQFEPEVVKVALVVDPDVPVGVRRLGSIVILHVRELTDVRRVLFSGALA
>NZ_CP053707.1|WP_173027189.1|870758_873287_+|hypothetical-protein
MTDQQPAGPAQPSLATALRGGRKRAPRRRDADAPSVWRRLVPGRDALVDLVFALVLGSIALLGMRTGFLGVEWVVAAWSGLVLGLLVGHVAGTLRWMALTTFAVLVAVYFLLGGPLAVRDNLVAGFVPTGQTFVDLATWAVTGWKKWLTLLPPVDARGPVLALPWLAGLLGGATTLGFARRWANVPLTAVAPLALLAASIALGTTQPAALLVQGVGFAAVLVAWLVVRAHRTRPPVQNGAGRGVRFATAGVLAVVALVAGTFAGPLLPGTSAAATREVVRERLVPPFDVSQFASPLPGYRQYTEPNDAKLYDEVVLRVSGLPAGTPVRFATLDRYDGLVWGAADRTADGTPFQQVGSRIAPSGADGREVDVDVTVPDGGYSGVWLPTVGDPTRIEFSGPRARDLADALWLNTATDTAVVQAGLLGGDTYRMSALVPPAPATTLPEDLDVRTGASTAVDTDFLDAKIDALTSRADGGPWSKLRAFATAMRTEGTYTDGGTPNSFEKVYLPGHAVSRLTRFAGSSKLAGNDEQYAATLALVGQRLGIPSRVVMGGIPQAGGEVRGKDVHAWVEVQLDDGTWFPMGYQSFVPSRDKTPSEQQLKTEEQKVGAQVPPPAGVSPPSVLQGPDQAQNATDVTKRKKNPFDVTAWPLWLQILAAVVALLLLAALYVGVLRLLKARRRRRHASLGPVPGRAAWVWRDLVAESRSLGVPVPRGVTRREQAHDIDAAVALRSAPESAPGEPAAYAVADDLVPVSAVAASVDAVVFGPGEGDPEATTALHAQAEAARTTMRSGLSRWARLRSDADPRPLWVQRERTAPRPRWWRRLRLPSLPRRRGGQDPTPA
>NZ_CP053707.1|WP_173027190.1|873407_874052_-|response-regulator-transcription-factor
MVVAGLRHTLPTLLPQAEIGPVEPTVFRLLEQRQPVDVILLDVELPDATDTAADVTFLTQRGVAVLLFSEYRAPHLVAKALEAGACGVVSKCADLPVLAAALVEVAAGRTSTSPDWARLLEDDDTWRVPDLTPRETEVVRHYAAGLKLGSVARRLNVSEDTTRTYLLRARAKYDTVGRPAPTKTDLYIRAVEDGILPVPGTLAHPGRRREFKAS
>NZ_CP053707.1|WP_173027191.1|874379_875471_-|inositol-3-phosphate-synthase
MGSIRVAIVGVGNCASSLVQGVHYYRDADPTATVPGLMHVRFGEYHVSDVEFVAAFDVDDKKVGKDLSEAINSSENNTIAIAEVPTTGVTVQRGHTLDGLGKYYRQTIDESGAEPVDVVAMLRDAQVDVLVSYLPVGSEQADKFYAQCAIDAGVAFVNALPVFIASDPEWAAKFEAAGVPVIGDDIKSQVGATITHRVMAKLFEDRGVQLDRTYQLNVGGNMDFKNMLERERLESKKISKTQAVTSNLTGSLAGKTEDRNVHIGPSDYVAWLDDRKWAYVRLEGRAFGDVPLNLEYKLEVWDSPNSAGIIIDAIRAAKIAKDRGIGGALLSASSYLMKSPPEQRPDEVGRARLEAFIAGDEER
>NZ_CP053707.1|WP_173029991.1|875551_876112_-|PadR-family-transcriptional-regulator
MSRRAQLLELAVLGLLHEGPTHGYDLRRRLNTALGPFRALSYGTLYPALKTLLGRGLIAEASEGPRPGKRPRVVYELTAAGKEHFAELVARTDASSWEDDGFDVRFAFFARTEREVRLRILEGRRTRLEEDLERVRERSARHRERLDSYTAALQRHGEETTEREVRWLGELIDAERRHPTDPGPQP
>NZ_CP053707.1|WP_173027192.1|876386_878591_+|penicillin-binding-protein
MSQRQPRPRPDAPRRAAARPGAAAPKTSRTRRWLRRVVWAGLGAFVLGLAGFFVAYAMTDIPQPNEMVTAEASTVYYSDGKTVLARLSDEGGNRQSVPLADISENMQHAILAAEDRDFYQNSGISPTGIARAVWVAVKGGQATQGGSTITQQYVKNYFLTQDRTLTRKAKEILISLKIDKQQSKDEILTNYLNTIYYGRGAYGIETASQAYFKKSAKNLTPAEAAVLASVIRGPSFYDPTLGDEQKANAQERSAYILDAMVAKKWLSQEDRDQADVDEVLDRIQPYKPKQLGGTNGYVVDLVKKELTSKYKLSDTDIQRGGLKVVSTVERAKQYAAVTAVRDQRPDVEDVHEGLVSVRPGNGAIVALYGGEDFADRPLNNATQAKMQAGSTFKIFTLIAALQEKKASIRSTFPGYSPQYFEEFADPASSDSETRRGRVKNFGNEQFGNIDLLTATGHSVNTVYAALNIEVGPKNTMAAAQDAGVRSKLEANVADVLGTDYVTVLDMANAYATIAAQGVRAEPYIVKEIRFPDEKQPVVKAKPKTKRVFDEDLMADVITAMQEPVNGGTARYVGENLGRPAAGKTGTSESFRSAWFDGYVPQLATAVGLYRSDDKTGKELQMENLPNAGNITGGTFPTRIWTEYMKAALEGSDVREFPQPANINKDVLPPPPPTTQAPQPTQSSAPPSSSAPPSSSAPPSPSDRPTQTPEPSATLPSLPGRPSGSPSPNASPPTG

Crispr_ID: NZ_CP053707_7

• CRISPR_ID: NZ_CP053707_7
• CRISPR_location: 1285619-1285710
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP053707_7

Consensus_repeat	Method
TCGAGGTGAAAGGGGACCCTCTCGCGGT	CRISPRCasFinder

spacers of NZ_CP053707_7

>7.1|1285647|36|NZ_CP053707|CRISPRCasFinder
GGGGTTTCACCTCGACCCACCGGATGCCCCAGCGCT

CRISPR arrays and Neighbor proteins around NZ_CP053707_7

CRISPR arrays

The CRISPR arrays of NZ_CP053707_7

>merge|NZ_CP053707|7|1285619-1285710|CRISPRCasFinder
TCGAGGTGAAAGGGGACCCTCTCGCGGTGGGGTTTCACCTCGACCCACCGGATGCCCCAGCGCTTCGAGGTGAAAGGGGACCCTCGCGCGGT

>NZ_CP053707|7|5|1285619-1285710|CRISPRCasFinder
TCGAGGTGAAAGGGGACCCTCTCGCGGT	GGGGTTTCACCTCGACCCACCGGATGCCCCAGCGCT
TCGAGGTGAAAGGGGACCCTCGCGCGGT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053707.1|WP_173027527.1|1284515_1285601_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP053707.1|WP_173030030.1|1276791_1278405_+|serine-hydrolase	unknown	unknown	gnl|CDD|179620
NZ_CP053707.1|WP_173027528.1|1285985_1286798_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP053707.1|WP_173027535.1|1293586_1295770_+|DNA-polymerase-III-subunit-gamma-and-tau	unknown	unknown	gnl|CDD|236090
NZ_CP053707.1|WP_173027523.1|1280324_1281617_+|extracellular-solute-binding-protein	unknown	unknown	gnl|CDD|270452
NZ_CP053707.1|WP_173027536.1|1295766_1296462_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl|CDD|153251
NZ_CP053707.1|WP_173027533.1|1291411_1292860_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP053707.1|WP_173027521.1|1278414_1279290_+|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224651
NZ_CP053707.1|WP_173027537.1|1296535_1296757_+|heavy-metal-associated-domain-containing-protein	unknown	unknown	gnl|CDD|225328
NZ_CP053707.1|WP_173027531.1|1288819_1290181_-|MHS-family-MFS-transporter	unknown	unknown	gnl|CDD|340927
NZ_CP053707.1|WP_173027534.1|1292856_1293501_-|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|224054
NZ_CP053707.1|WP_173027529.1|1286816_1287281_-|DUF3817-domain-containing-protein	unknown	unknown	gnl|CDD|378962
NZ_CP053707.1|WP_173027522.1|1279347_1280328_+|N-acetylmuramic-acid-6-phosphate-etherase	unknown	unknown	gnl|CDD|235467
NZ_CP053707.1|WP_173027524.1|1281714_1282614_+|sugar-ABC-transporter-permease	unknown	unknown	gnl|CDD|224096
NZ_CP053707.1|WP_173027530.1|1287436_1288561_-|ScyD/ScyE-family-protein	unknown	unknown	gnl|CDD|380207
NZ_CP053707.1|WP_173030029.1|1273571_1275347_+|glycoside-hydrolase-family-3-C-terminal-domain-containing-protein	unknown	unknown	gnl|CDD|366376
NZ_CP053707.1|WP_173027520.1|1275379_1276684_+|DUF1343-domain-containing-protein	unknown	unknown	gnl|CDD|377768
NZ_CP053707.1|WP_173027525.1|1282610_1283555_+|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl|CDD|223472
NZ_CP053707.1|WP_173027526.1|1283568_1284501_+|hypothetical-protein	unknown	unknown	gnl|CDD|225518
NZ_CP053707.1|WP_173027532.1|1290550_1291375_-|DsbA-family-oxidoreductase	unknown	unknown	gnl|CDD|239322

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP053707.1|WP_173030030.1|1276791_1278405_+|serine-hydrolase	gnl|CDD|179620	PRK03642, PRK03642, putative periplasmic esterase; Provisional.	2.56792e-63
NZ_CP053707.1|WP_173027537.1|1296535_1296757_+|heavy-metal-associated-domain-containing-protein	gnl|CDD|225328	COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism].	4.62891e-10
NZ_CP053707.1|WP_173027535.1|1293586_1295770_+|DNA-polymerase-III-subunit-gamma-and-tau	gnl|CDD|236090	PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated.	0
NZ_CP053707.1|WP_173027523.1|1280324_1281617_+|extracellular-solute-binding-protein	gnl|CDD|270452	cd14749, PBP2_XBP1_like, The periplasmic-binding component of ABC transport systems specific for xylo-oligosaccharides; possesses type 2 periplasmic binding fold. This group represents the periplasmic component of an ABC transport system XBP1 that shows preference for xylo-oligosaccharides in the order of xylotriose > xylobiose > xylotetraose. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 proteins are comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.63117e-60
NZ_CP053707.1|WP_173027536.1|1295766_1296462_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl|CDD|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	8.10072e-55
NZ_CP053707.1|WP_173027529.1|1286816_1287281_-|DUF3817-domain-containing-protein	gnl|CDD|378962	pfam12823, DUF3817, Domain of unknown function (DUF3817). This domain is of unknown function. It is sometimes found adjacent to pfam07690 and pfam03176 which are both transporter domains.	8.83654e-20
NZ_CP053707.1|WP_173027531.1|1288819_1290181_-|MHS-family-MFS-transporter	gnl|CDD|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	0
NZ_CP053707.1|WP_173027534.1|1292856_1293501_-|ABC-transporter-ATP-binding-protein	gnl|CDD|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	7.0599e-40
NZ_CP053707.1|WP_173027521.1|1278414_1279290_+|MurR/RpiR-family-transcriptional-regulator	gnl|CDD|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	1.31082e-75
NZ_CP053707.1|WP_173027522.1|1279347_1280328_+|N-acetylmuramic-acid-6-phosphate-etherase	gnl|CDD|235467	PRK05441, murQ, N-acetylmuramic acid-6-phosphate etherase; Reviewed.	2.12736e-143
NZ_CP053707.1|WP_173027524.1|1281714_1282614_+|sugar-ABC-transporter-permease	gnl|CDD|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	1.0335e-68
NZ_CP053707.1|WP_173027530.1|1287436_1288561_-|ScyD/ScyE-family-protein	gnl|CDD|380207	NF033206, ScyE_fam, ScyD/ScyE family protein. This family includes ScyE, a protein involved in scytomenin biosynthesis and export, and its paralog ScyD. Some members of the family contain a C-terminal PEP-CTERM domain that predictions anchoring to the outer membrane.	6.25232e-68
NZ_CP053707.1|WP_173030029.1|1273571_1275347_+|glycoside-hydrolase-family-3-C-terminal-domain-containing-protein	gnl|CDD|366376	pfam00933, Glyco_hydro_3, Glycosyl hydrolase family 3 N terminal domain.	1.75162e-102
NZ_CP053707.1|WP_173027520.1|1275379_1276684_+|DUF1343-domain-containing-protein	gnl|CDD|377768	pfam07075, DUF1343, Protein of unknown function (DUF1343). This family consists of several hypothetical bacterial proteins of around 400 residues in length. The function of this family is unknown.	0
NZ_CP053707.1|WP_173027525.1|1282610_1283555_+|carbohydrate-ABC-transporter-permease	gnl|CDD|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	2.73259e-85
NZ_CP053707.1|WP_173027526.1|1283568_1284501_+|hypothetical-protein	gnl|CDD|225518	COG2971, COG2971, Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism].	2.20925e-20
NZ_CP053707.1|WP_173027532.1|1290550_1291375_-|DsbA-family-oxidoreductase	gnl|CDD|239322	cd03024, DsbA_FrnE, DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.	5.87649e-82

Protein sequences

>NZ_CP053707.1|WP_173027527.1|1284515_1285601_+|hypothetical-protein
MEIPQHWVRVEGFSPHLGRSGAPLSVWGWSTTSDADAERVGRERLAELLERVAREGRLPETRGYYPRTPLREPVLEEVRADDGRLIGVVTRNRMGCEVLCTDLLLIADVDCPELADERPAARRRATRSTPGDRGRGVGGFFRRLVLGRPDPTPMEPSGEDAAGLDGPEPVAAPAGGSASSAGASGYEAYPDLPGEDGRVVTATGPGGPSVADCLAAENAWEFGRRHPELGVRVYRTAAGLRVVVTGAGLAPQSDEARALLTELESDPLYVELCAMHASYRARLTPKPFRVGRTALTVPWPCRDDAEERAYLRWVDTYEAAVGEYAVCRLVSASGPLPGPDEQRLVELHDERTGVAERLPLA
>NZ_CP053707.1|WP_173027526.1|1283568_1284501_+|hypothetical-protein
MSTVVAVDVGGSGLRLVVQRDGVAGDPRRGVGARVGASGLDVAALAADARTLLDAEGVDAPDAVCWSMRGLLFLAEPAEVLRSVAAALRGRRTAVVSDAVANLVGALGAVEPGAVVAAGTGAVAFGSDFGEHWTRVDGWGHVLGDRGSAAWVGLEGLRAALRARDGVGAGSPGLLADAEGLLGPCETWPRRVMTGADAPEALASVAPLVTAAAEAGDDVAAGVCAAAGRALGESLLAAAAGLADPRLVATGGLLSASAVRRELEAVVAGVGARVEPAVGGALDGALLLAARLDADGALPGHPRYVHVAGA
>NZ_CP053707.1|WP_173027525.1|1282610_1283555_+|carbohydrate-ABC-transporter-permease
MSVVPAGIGAADERTDVTSTPEGVLTPSGPSGRRGPRGTRGRQKPVGGRTASVLLWVYAAFALIPLLLMVSSSFRSNGDLISDPLGAPWPLSFDAYREAWTAGNFATYFGNSLLVTIGAVLLSTTVSTMAAYALARGRSRIFRWLESLFLSGLMLPIHLAILPIFYLFDGVGLIDSRLGLALMYGASGVPFSIFVLTTFFRQLPAELEEAATLDGAGSWRTFWRIMVPLVRPAVATVAVFRFVPIWNDFLFPLVLLRSQDKYTLPVGLTTFFGENATNYAAVFAGLVITTIPLIVLFLVATKQIVAGLTAGMAK
>NZ_CP053707.1|WP_173027524.1|1281714_1282614_+|sugar-ABC-transporter-permease
MNRRTGLLFVTPALALFGVFVLYPMLTSFSYAFYGWAGTARQGFVGLENFTALFTRAPFTTDLPRALWHNVLFFIGTMLVQNTIGLTIAFLLHRRATTRRALQTLYAMPYLVSPIVIGYLWTLLLSPTFGPVNTLLTKVGLESWALPWLGDPDTALWVVILVSVWQWIGFPVLLYGAALGGVPDELTEAARVDGASNGQAFRRVVFPLLVPAIGTVSVLTFIFAMEAFALPYAFGGSTGNPAGSTDFLSLLFYRTAFDSGSTDAIGTSSALATLLFLLIFGGAFGATAVLRRHEKGITG
>NZ_CP053707.1|WP_173027523.1|1280324_1281617_+|extracellular-solute-binding-protein
MTFRTRRTGTALVVGAGLLALAACAPSSSSDGAAGDGDSTTLTVWSWRVEDKAAYEKIFDAYEAKNPGVTVDFKPFKATEYNKILATGLAGSDGPDVPQVRSYGGLQTTVASGSLVPLDGAVDLSSWDENIVAGAKGKDDGKLYSVPLARQATVLFYDKKMFADNGIQVPTTWDQFISVNDTLLGKGVTPLAVGAKDDWTLPIVHEVLGASRFGGAAFQEAVQSGEKDFTDPDFVASVEVLKGLEKYMPKSVTGVAVTDAMTLFSSGKAAMYPGGSYDLAALQTANPEMDLGVFQVPPAPGAPSGSDATTAGWADGNFAVNAKSPRKEAATKLVQWMATPEFGQMVADDIKQISAVPGVTYSDPVLKDVAANLDANGSPYLLLTDFRYGSPSGTDLLGKGTQELFLGSKDAQAVSSELNEGVMTWFKPTS
>NZ_CP053707.1|WP_173027522.1|1279347_1280328_+|N-acetylmuramic-acid-6-phosphate-etherase
MITEASVLAPTEERHPGTVGIDALGTLEVLRLLNAEDARVAPAVALVLPQLAALVDAAVAAVRAGGTVHYVGAGTSGRLAVLDAAELLPTFNAPPGLVVAHHAGGPAALLRAVENVEDDADQGALDLDDVTARDVVVGLTASGRTPYVAGALRLARERGAVTALVTAHPAPELGALADHCLAVDTGAEAITGSTRLKAGTAQKLVLNAFSTAVMIRLGRTWSNLMVDVVATNAKLRGRVVRILREATGATDDEARRALEACDGELKPALVALLAGVDAPTARRSLAAAQGSVAHALAALPVPSVPSVPTDSSTPRPSAPVPTGDPA
>NZ_CP053707.1|WP_173027521.1|1278414_1279290_+|MurR/RpiR-family-transcriptional-regulator
MSTQPTDGAPSLLVRLRGVRPSLSPAEDRVAEQVLADPRAAAGLTISELAVSASTSETTVLRFCKRLGLRGYPQLRLALAEASTGGRPTAPTSDISADDTVDDVIAKVAYADASAVEETAQTIDREALVATAQAISRAGRVDVYGIGASALVGMDLQQKLHRIGTVVFAWNDPHIALTSATLLGPGDVAIGISHSGTTTETVEALELARSRGATTVAVTNFPVSRLAEGADHVLATAARESSLRSGATASRIAALTVVDCLYIAVAQHDLVRAQDAVEQTRRAVAGHHVRY
>NZ_CP053707.1|WP_173030030.1|1276791_1278405_+|serine-hydrolase
MPANTVLRDRAPERVGLDPAPIAEAERLIASHEEAPASGGHPMYAGAVGVMGHDGAVVARHASGWASRWKDATTELPREQWEPMRGDTVFDLASVSKLFTSLATVQLIEDGTVDLEAPVARYLPEFGVNGKQDVTVRMLLTHTSGFTSWLPLWSKYPDVPSRIKAVMDQPPTNAPGSTYLYSDLNLITLGVMVERLTGKPLDRVVHDRITAPLGMRDTGYNPTDPSRTAATEYQTAPPRGMVRGEVHDENAWSLGGVAGHAGVFSTADDLAVLSQALLNGGTYRGHRILDRRSVEMLVTNFTEDFPGDAHGLGFELDQRWYMDALSGPRTAGHTGYTGTSIVIDFDSRSFAILLTNRVHPSREWGSNNPARQEWARGLAQAMPVDPRHGRTAWAAGGTNATTATLSAPVDVPRGGARLGFDVFVDTEETDVLTLETSADDGATWTPLPFSLRDRGPAQQTDGTVSGEHGRRWMQARAELPQGDQLIRWRMTTDATYLGRGVLVDGVRATAGHRVLLDGERRPGVFDPRGWSVVQRAS
>NZ_CP053707.1|WP_173027520.1|1275379_1276684_+|DUF1343-domain-containing-protein
MTSLDRRTLFAATAVTAAATAVGAPVAHASGRPGHGCGVTTGADRAAADRWAVLRGRKVGVVTNPTGILANLRSVVDEMHGSGRVDLRAVFGPEHGFRGTAQAGDAEATHTDPRTGVTVYDAYGAGADSLSAMVREAGVDTVVFDIQDVGARFYTYIWTMYTAMRAAVRTGCSFVVLDRPNPIGGTARGPMMTTAFTTGVGAKEIVQAHGMTVGELARFFDGEFLEGDEGKRLGDALEVVEVSGWRRDTLFAGTDLPWVMPSPNMPTPDTALVYPGTCLFEGTNLSEGRGTTRPFELVGAPFVDHRWAERLQARRVPGVDFREAYFNPIQSKHVGVVCGGVQVHVTDPERLDGPRLGAEMLVAARALYPEFAWRKDAYDPQRPYWVDKLTGSPRLREMVDAGASADAVVAAWRSELAAFERRRRPYLLYRGGRA
>NZ_CP053707.1|WP_173030029.1|1273571_1275347_+|glycoside-hydrolase-family-3-C-terminal-domain-containing-protein
MALALAGAAAPAASAGGHRPGHPRPGRHHGWVTSTMARMTLHEKVGQLFVQQVYGSVADAPDERNVPLYGVAKPSEVVQKYALGGVIYFAWTDSVKDPDQITALSNGLQKAAMTRRTKARIPLAVGVDQEQGVVTRIGPPATQFPGSMALGAGRSTRDARTAAAITGEELRAMGITTNYAPDADTNVNPLNPVIGTRSFSSDPALASEMVAAQVTGYQRDGRVMAAAKHFPGHGDTATDSHVAFPVITHTRQQWEEIDAPPFRAAIAAGIDMVMTAHLSFPALDDSGDPATLSRPILTGLLREELGYEGVIITDSLEMQGVRDRYGDEEVAVRALAAGADQLLMSPALPAAFEAVVAAVESGRISRRDLDAKVRRVLTLKAERGVVDQPWADPKRVDRVVGTPEHLAAAAAVTNRTTTLVRNDDGVLPMAVRGKDLLVTGYGDTTTRTLAAGLDAQGARSTVLVTGSAPTDAQVAAAVAAAAGRDAVVVTTMKAWDSAVTDKNRGQQKLVAALRSTGVPVVVVATRDPYDIAYLGDTETYLATYSYSPVALEAAARVIAGAVAPTGKLPVDIPVAGDPTTVLHPFGHGLGY
>NZ_CP053707.1|WP_173027528.1|1285985_1286798_+|hypothetical-protein
MDEGAKVSTRSPRGAWTPPVDGSSRPPRRSDRVFGVVMVLLWVAWLVLTGMTQARLVSPDRLRDDLAAGRVTDWRFVDVQDVGRDGWAADPAVALPAMRPDGTLDPEQEALGGRPSVEYHVDSVLAPRRIVDPGTLGGGADAEAAVLRAAGVPPAPHVFPFETAGPSREVVVFAALPLLLMMLVSVGVGPRPTRGSRWFWFWQLWVPLGLGVLAYAVLEQVRPAPALGAGQRPRRGGWLGLGVAILSGVLVAGVLTTLADATHWLWLVRP
>NZ_CP053707.1|WP_173027529.1|1286816_1287281_-|DUF3817-domain-containing-protein
MTPATLYPALARTEAVTWALLLLGMTLKYVTRTTELGVAVFGLVHGVVFLAYVLVTVVVALDQRWSRRLTLLALVAALPPFATLWVERRVERSGRLATSWRLAPGGERPGHVLEHALARALARPVLSAVVGGALVLLATAALLVVGPPGGRAGA
>NZ_CP053707.1|WP_173027530.1|1287436_1288561_-|ScyD/ScyE-family-protein
MTRPTRMLAAVAAASAFLLVPPATASAHGGRPTPHPVPRSDQLAAPFNIDSSAGSVLVADGGPGLVGRLQRDGSVKPIATDQPGASGVARSRDGKRIAWTTTVTDFSTFENSESGLTIRDGRGRTTYADTHAYEVAKNPDAWVHYGVRNPSQCVTDAFTAAQFPVSYTGGVDSHAYSVAATRSGWVVADAGANALFSVSNSGRIRTLAVLPAQRTTFTAEMAAALGLPDCVVGVTYAFESVPTDVEVGHDGMLYVTTLPGGPESPVLGARGSVYRVDPRSGEVRRVARGFLGATNLALGRHGEIYVAELFAGRISVVRHGQVKPYLDLPGVVAVESGRNGTLWAATLGNEDPPAPGTIVQIYDGKKHWRGTWGG
>NZ_CP053707.1|WP_173027531.1|1288819_1290181_-|MHS-family-MFS-transporter
MSDTVVSPAGSASPTPTRPNIVKIVFASVVGTAVEWYDFFLYGSAAALVFGSLFFPDSDPLTGTLLAFGTYALGFVARPLGGVVFGHYGDRVGRKKMLVISLLMMGGATVAIGLLPTYATIGIAAPILLLVCRLVQGFAVGGEWGGAVLMVAEHGKDEHRGFWSSWPQAGVPFGNLLATGVLWLLSVFQTDEAFNAWGWRIPFLLSAVMVLIGLWVRVSLEESPVFAEAKAEIQSSEKSHLPILEVLRRYPREVLLAMGMRMAENISYYIFTIVVITYVTTYLGAQKGVVLGALLAGAAMQSVLIPLIGALSDKVGRRPLYLVGAVGVGVWGFVYFGMIDSLSGPQIMLATLVGLFFHALMYSPQAAFFSELFGTSVRYTGASVGYQLASIFAGALAPIIALQLLGSTDEKNTGAVAIYLAVASAVTVVSVLLAKETRATSLRHDRVLDGARD
>NZ_CP053707.1|WP_173027532.1|1290550_1291375_-|DsbA-family-oxidoreductase
MRIDVWSDILCPFCHLGRRHLELALEQFEHADEVGVVWHSFQLDRNAAAVDDTPQIDRIAEKYGTPREQMVAQHEQMARDAADVGLEFAWERLVGGNSYDAHRLLHLARSRDLEQPVTDRVLRAWYSEGAAIGDHETLVRLGVEGGLDEQAVRDLLASDDFGIDVRTDEALAGQIGITSVPTFVLDQKYGVTGAQPVEVILQAIRQVWDLQGTEPEMPAAGGGCGGGCCGGACGSGGGAEAAQPEASGCGCGAGGCGGVCGPDEHVAQAEPATR
>NZ_CP053707.1|WP_173027533.1|1291411_1292860_-|hypothetical-protein
MTDTPVDDEPVGTDRERLTDVQHVLHGPEGSGSWRSLLYTLYVVALLSGIYGFTVLRGVVEVADLPARGISLAPTSGVGALVLGGVVLLVVVLVLLAHATGRRRGPVTPDLPWLDHVATGPADRGLVLREAWLLPATGLLVGGTLVGSVLGAAVWGGGAAGPAAAGTGLAAGLLGSGAVLVAWLAGQLAADDHAELGTGAAVRTAARPRTALRTLGLDGLRAHSARSARLGGAALAGDPRAIRLEAASPVRRGRSWRLRSRGPVRTVLARDVLGLRRQPFLVVGSAVLLLAAGVALGAVVAGRPGNIVPAALCALLLHLGVGPVCEGLRLLGDTLGAPRLLGGSVAREAAAHTAAPAALVLVVAVPAATVTAGLLAGGVPAATAALVTASAGAAVLGSQWLAAFRVMPPSFALLPEVGPQVLLAWLAVPLIVSAGAGVVVVQTLLAATAGVPLAAASAGLAVVVVWLRASSVLGRASSAHRD
>NZ_CP053707.1|WP_173027534.1|1292856_1293501_-|ABC-transporter-ATP-binding-protein
MTGTRVEVRDASKSIDGAVLLHPTSFAVRPGTCVVLRGPNGAGKTTALRLAAGLTSPSTGTVTLDGEPADERRPATREAVAALLGTPAGWRDLTLVDHLTLVDASWGRDPSTCHERVLAALDEVGIAHLPDRFPHELSSGQTQLFHLALTLFRPARLLVLDEPEQRLDTDRRMLLAGLLAARRDRGTTILLACHDPAVTEAVADGVVDIDPGHR
>NZ_CP053707.1|WP_173027535.1|1293586_1295770_+|DNA-polymerase-III-subunit-gamma-and-tau
MSTALYRRYRPETFVDVIGQEHVTEPLMQALRTGRVGHAYLFSGPRGCGKTTSARILARCLNCEQGPTPEPCGTCDSCVALARGGPGTVDVIEIDAASHGGVDDARDLRERASYGPAQSRYKIYIIDEAHMVTPQGFNALLKIVEEPPEHVKFIFATTEPEKVIGTIRSRTHHYPFRLVPPARLQAYMEELCGREGVAVAPGVLSFVVRAGGGSVRDSLSVLDQLMAGSGEAGLTYESAAALLGFTDGELLDATVEAFAAGDAAAVFRAIDRVVETGLDPRRFVEDLLERLRDLIVVEAMREGAAQVLRHVPEDQLERMRRQAAAFGAGSLSRAADVANAGLTEMSGATAPRLQLELLAARILLPGAAGEAGYAARLDRLERRLEVGGVPSAAAASSPIPASAAPAAVPAAAPAPAPAAPAAPAPEAMTPRPAPVEPPTPERETPAPASSPAPPQQSAPPQSAPSRPAAQHQDAPPQQSAPQQAAPPHQQPAQSQRPPAPAAGAPRGPGGIDTDAIRRSWPDVLDWLSRHKRVTWTFVSQNAQVVEYDGVRVMLAISTSGLAETFRRGAHAEYVRQALIDVLGVDAKVEGRPGDVQVPQTPEPADVPPPPDPGPSGHDAPPPPEPTRDRGPSPAEMGVTAGPGPRGDAPSWSDAPPPPESAPSWASPLEQAKAAVAAESEQEVVAQQHVVDDTAISEDDESIDDLSDVGVPVVERILGGTVIQEQDR
>NZ_CP053707.1|WP_173027536.1|1295766_1296462_+|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MSRVAYRAGHLVIAPASKLLWRPTVTGTHHVPRTGGVVLASNHLSFIDSFAIPIVAPRPVSFLAKSDYFTGPGVGGAVRRGFFETIGAIPVDRHSSRAAQESLDAALEVLRAGRAFGIYPEGTRSRDGRLYKGRTGVAWLALTAGVPVVPVGLVGTDAVQPVGSSFPRRAKVRVSFGPPIHPGPYAGMPAGKARRLMTDAVMDAIAGLSGQERADTHNELPPESTGAAVGI
>NZ_CP053707.1|WP_173027537.1|1296535_1296757_+|heavy-metal-associated-domain-containing-protein
MPSTQQFRATGLTCGHCAHAVTEELTALDGVDEVAVEVVSGGESLVTVTGRGLTDAEVAAALDEAGDYALVTG

Crispr_ID: NZ_CP053707_8

• CRISPR_ID: NZ_CP053707_8
• CRISPR_location: 1990040-1990128
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP053707_8

Consensus_repeat	Method
ATGCGTGTCGGGTGGGAGGGAAACCTC	CRISPRCasFinder

spacers of NZ_CP053707_8

>8.1|1990067|35|NZ_CP053707|CRISPRCasFinder
GCAGGGTGGAGGGAATCGTCTCGACCTGGGGAGAC

CRISPR arrays and Neighbor proteins around NZ_CP053707_8

CRISPR arrays

The CRISPR arrays of NZ_CP053707_8

>merge|NZ_CP053707|8|1990040-1990128|CRISPRCasFinder
ATGCGTGTCGGGTGGGAGGGAAACCTCGCAGGGTGGAGGGAATCGTCTCGACCTGGGGAGACATGCGTGCCGGGTGGGAGGGAAACCTC

>NZ_CP053707|8|6|1990040-1990128|CRISPRCasFinder
ATGCGTGTCGGGTGGGAGGGAAACCTC	GCAGGGTGGAGGGAATCGTCTCGACCTGGGGAGAC
ATGCGTGCCGGGTGGGAGGGAAACCTC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053707.1|WP_173028151.1|1999318_2000107_+|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl|CDD|224997
NZ_CP053707.1|WP_173028139.1|1977706_1978243_+|DsrE/DsrF/DrsH-like-family-protein	unknown	unknown	gnl|CDD|379334
NZ_CP053707.1|WP_173028142.1|1985817_1988358_-|glycogen/starch/alpha-glucan-phosphorylase	unknown	unknown	gnl|CDD|376320
NZ_CP053707.1|WP_173030092.1|1978303_1980520_-|1,4-alpha-glucan-branching-protein-GlgB	unknown	unknown	gnl|CDD|235445
NZ_CP053707.1|WP_173028140.1|1980525_1981983_-|aminoglycoside-phosphotransferase	unknown	unknown	gnl|CDD|237794
NZ_CP053707.1|WP_173028137.1|1976099_1977344_+|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl|CDD|223523
NZ_CP053707.1|WP_173028149.1|1996968_1997649_-|zf-HC2-domain-containing-protein	unknown	unknown	gnl|CDD|379219
NZ_CP053707.1|WP_173030093.1|1981975_1983709_-|maltose-alpha-D-glucosyltransferase	unknown	unknown	gnl|CDD|274140
NZ_CP053707.1|WP_173028148.1|1995541_1996897_+|enoyl-CoA-hydratase/isomerase-family-protein	unknown	unknown	gnl|CDD|180270
NZ_CP053707.1|WP_173028143.1|1988488_1989844_-|alpha-hydroxy-acid-oxidizing-protein	unknown	unknown	gnl|CDD|239448
NZ_CP053707.1|WP_173028138.1|1977390_1977705_+|TusE/DsrC/DsvC-family-sulfur-relay-protein	unknown	unknown	gnl|CDD|377326
NZ_CP053707.1|WP_173028136.1|1974318_1975983_-|alpha-D-glucose-phosphate-specific-phosphoglucomutase	unknown	unknown	gnl|CDD|236050
NZ_CP053707.1|WP_173028147.1|1994045_1995467_-|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl|CDD|223080
NZ_CP053707.1|WP_173028152.1|2000139_2001099_+|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl|CDD|224936
NZ_CP053707.1|WP_173030094.1|1998203_1998980_-|DUF4394-domain-containing-protein	unknown	unknown	gnl|CDD|373019
NZ_CP053707.1|WP_173028144.1|1990260_1990788_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP053707.1|WP_173028141.1|1983723_1985751_-|alpha-1,4-glucan--maltose-1-phosphate-maltosyltransferase	unknown	unknown	gnl|CDD|200482
NZ_CP053707.1|WP_173028150.1|1997645_1998191_-|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl|CDD|236605
NZ_CP053707.1|WP_173028145.1|1990867_1991758_-|phytanoyl-CoA-dioxygenase-family-protein	unknown	unknown	gnl|CDD|368580
NZ_CP053707.1|WP_173028146.1|1991868_1993998_-|glycogen-debranching-protein-GlgX	unknown	unknown	gnl|CDD|131155

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP053707.1|WP_173028151.1|1999318_2000107_+|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl|CDD|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	2.87022e-78
NZ_CP053707.1|WP_173028139.1|1977706_1978243_+|DsrE/DsrF/DrsH-like-family-protein	gnl|CDD|379334	pfam13686, DrsE_2, DsrE/DsrF/DrsH-like family. DsrE is a small soluble protein involved in intracellular sulfur reduction. The family also includes YrkE proteins.	7.70953e-30
NZ_CP053707.1|WP_173028142.1|1985817_1988358_-|glycogen/starch/alpha-glucan-phosphorylase	gnl|CDD|376320	pfam00343, Phosphorylase, Carbohydrate phosphorylase. The members of this family catalyze the formation of glucose 1-phosphate from one of the following polyglucoses; glycogen, starch, glucan or maltodextrin.	0
NZ_CP053707.1|WP_173030092.1|1978303_1980520_-|1,4-alpha-glucan-branching-protein-GlgB	gnl|CDD|235445	PRK05402, PRK05402, 1,4-alpha-glucan branching protein GlgB.	0
NZ_CP053707.1|WP_173028140.1|1980525_1981983_-|aminoglycoside-phosphotransferase	gnl|CDD|237794	PRK14705, PRK14705, glycogen branching enzyme; Provisional.	1.24731e-104
NZ_CP053707.1|WP_173028137.1|1976099_1977344_+|NAD(P)/FAD-dependent-oxidoreductase	gnl|CDD|223523	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only].	5.77225e-33
NZ_CP053707.1|WP_173028149.1|1996968_1997649_-|zf-HC2-domain-containing-protein	gnl|CDD|379219	pfam13490, zf-HC2, Putative zinc-finger. This is a putative zinc-finger found in some anti-sigma factor proteins.	2.66792e-05
NZ_CP053707.1|WP_173030093.1|1981975_1983709_-|maltose-alpha-D-glucosyltransferase	gnl|CDD|274140	TIGR02456, Trehalose_synthase, trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (). [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NZ_CP053707.1|WP_173028148.1|1995541_1996897_+|enoyl-CoA-hydratase/isomerase-family-protein	gnl|CDD|180270	PRK05809, PRK05809, short-chain-enoyl-CoA hydratase.	1.17565e-80
NZ_CP053707.1|WP_173028143.1|1988488_1989844_-|alpha-hydroxy-acid-oxidizing-protein	gnl|CDD|239448	cd03332, LMO_FMN, L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.	0
NZ_CP053707.1|WP_173028138.1|1977390_1977705_+|TusE/DsrC/DsvC-family-sulfur-relay-protein	gnl|CDD|377326	pfam04358, DsrC, DsrC like protein. Family member DsvC has been observed to co-purify with Desulfovibrio vulgaris dissimilatory sulfite reductase, and many members of this family are annotated as the third (gamma) subunit of dissimilatory sulphite reductase. However, this protein appears to be only loosely associated to the sulfite reductase, which suggests that DsrC may not be an integral part of the dissimilatory sulphite reductase. Members of this family are found in organisms such as E. coli and H. influenzae which do not contain dissimilatory sulphite reductases but can synthesize assimilatory sirohaem sulphite and nitrite reductases. It is speculated that DsrC may be involved in the assembly, folding or stabilisation of sirohaem proteins. The strictly conserved cysteine in the C-terminus suggests that DsrC may have a catalytic function in the metabolism of sulphur compounds.	1.11349e-39
NZ_CP053707.1|WP_173028136.1|1974318_1975983_-|alpha-D-glucose-phosphate-specific-phosphoglucomutase	gnl|CDD|236050	PRK07564, PRK07564, phosphoglucomutase; Validated.	0
NZ_CP053707.1|WP_173028147.1|1994045_1995467_-|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme	gnl|CDD|223080	COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism].	5.92713e-127
NZ_CP053707.1|WP_173028152.1|2000139_2001099_+|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl|CDD|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	1.12242e-103
NZ_CP053707.1|WP_173030094.1|1998203_1998980_-|DUF4394-domain-containing-protein	gnl|CDD|373019	pfam14339, DUF4394, Domain of unknown function (DUF4394). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 262 and 476 amino acids in length.	2.8809e-69
NZ_CP053707.1|WP_173028150.1|1997645_1998191_-|sigma-70-family-RNA-polymerase-sigma-factor	gnl|CDD|236605	PRK09645, PRK09645, ECF RNA polymerase sigma factor SigL.	1.17204e-41
NZ_CP053707.1|WP_173028141.1|1983723_1985751_-|alpha-1,4-glucan--maltose-1-phosphate-maltosyltransferase	gnl|CDD|200482	cd11344, AmyAc_GlgE_like, Alpha amylase catalytic domain found in GlgE-like proteins. GlgE is a (1,4)-a-D-glucan:phosphate a-D-maltosyltransferase, involved in a-glucan biosynthesis in bacteria. It is also an anti-tuberculosis drug target. GlgE isoform I from Streptomyces coelicolor has the same catalytic and very similar kinetic properties to GlgE from Mycobacterium tuberculosis. GlgE from Streptomyces coelicolor forms a homodimer with each subunit comprising five domains (A, B, C, N, and S) and 2 inserts. Domain A is a catalytic alpha-amylase-type domain that along with domain N, which has a beta-sandwich fold and forms the core of the dimer interface, binds cyclodextrins. Domain A, B, and the 2 inserts define a well conserved donor pocket that binds maltose. Cyclodextrins competitively inhibit the binding of maltooligosaccharides to the S. coelicolor enzyme, indicating that the hydrophobic patch overlaps with the acceptor binding site. This is not the case in M. tuberculosis GlgE because cyclodextrins do not inhibit this enzyme, despite acceptor length specificity being conserved. Domain C is hypothesized to help stabilize domain A and could be involved in substrate binding. Domain S is a helix bundle that is inserted within the N domain and it plays a role in the dimer interface and interacts directly with domain B. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp residues (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	0
NZ_CP053707.1|WP_173028145.1|1990867_1991758_-|phytanoyl-CoA-dioxygenase-family-protein	gnl|CDD|368580	pfam05721, PhyH, Phytanoyl-CoA dioxygenase (PhyH). This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins, ectoine hydroxylases and a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalyzing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterized by the accumulation of phytanic acid in plasma and tissues.	5.43139e-17
NZ_CP053707.1|WP_173028146.1|1991868_1993998_-|glycogen-debranching-protein-GlgX	gnl|CDD|131155	TIGR02100, Glycogen_operon_protein_GlgX_homolog, glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0

Protein sequences

>NZ_CP053707.1|WP_173028143.1|1988488_1989844_-|alpha-hydroxy-acid-oxidizing-protein
MVDGAGRAGQATRVAEGIGRVAQAAIYRAGSFGRRPAVPTDGTRLEEAAERVMSRRAFAYVAGSAGSEAGAKANRAAFDRWRVVPRLLVDTSERDLSVEILGRRHPTPLLVSPVGVLSSAHPDADLAVARAARSACVTPVLSTQASVPMETVAQELDGSPFWYQLYWSRDDDLAASLVHRAEAAGAEALVVTLDTAYLGWRPRDLDLGHLPFARGEGIAQYTSDPVFARLVAERVTAAAAAASDTDHPAEPAPRPTPTAVRTLLAMSRNHPGGTRENLRSPVPRAAVETFLDVFSRPALTWEDLPRLRDLTSLPVLLKGVLHPDDAARALDLGVDGLWVSNHGGRQVDRTVAALDALPGVVAAVRERSPGTPVLFDSGVRTGVDALVALALGATAVGIGRPHVYGLALAGEDGVGEVLRNIAAELDLTAALTGCRTLADLTPDLLVRAPAG
>NZ_CP053707.1|WP_173028142.1|1985817_1988358_-|glycogen/starch/alpha-glucan-phosphorylase
MTDTVPTSSLVSDESPSTDARRIGPGFRTTHPLANGPVVQPATTVDGFVETFLAELNYSQGTLLSQSTVNDQYLALARTVRRYLMADWLETGARRRQAQQKTVGYLSAEYLLGRQLGNNVLATNLQDIAEEAMRRCGIDIATLRAQEVEPGLGNGGLGRLAACFVDSLATMDVPCIGYGIRYEYGIFRQTFEGDRQVERPDSWLSLGSPWEFPHPERQVLVGFGGSTAKTTAEDGTERTTWTPDWNVLGMPYHYMVPGFRNGVVNTLRLWSARATQAFDLQIFNSGDYAEAVRAQTFAENISKVLYPEDSTPQGKELRLQQQYFFVACSLHDYIDNTLPADFDLRRLPERIMFQLNDTHPVIAIPELMRILIDRKGFDWDEAWSITQKCFAYTCHTLLPEALEVWSVDLLGRLLPRHLEIIYRINEEFLEEVRAAFPGDEMRVRRMSVIAEHPERSVRMAYLATVAGSKVNGVAELHSQLLRDKVLPDFSELWPEKFTNVTNGITPRRFVRLANRRLSELLNDTIGEGWVTDLDRLRELEPYADDASFRAEFRRVKQANKERLYDLLKVRDGLELPRDTMLDVMVKRLHEYKRQTLKLLHIVSLYDDVVSGRVSADEVVPRTFVFGAKAAPGYHMAKEIIFLINAVADVVNTDPAVAGRLSVAFPANYNVTLAEKLIPAADLSEQISLAGKEASGTGNMKFALNGALTIGTDDGANVEIRRLVGDDHFFLFGMTEPEVERLRPGYSPSSYYEQNPRLRSTIDLLASGRFTGGDRQAVAPVIDNLLHQDAFMALADFQPYLDAQERVDAAYRDEDAWSRSAILNVARSGFFSSDRSMRDYLERIWRA
>NZ_CP053707.1|WP_173028141.1|1983723_1985751_-|alpha-1,4-glucan--maltose-1-phosphate-maltosyltransferase
MSDALRTAPPQDPIGRIPVQDVRPVVDHGSRPAKAVVGEELEVSATVFREGHDAVNATVVLTDPDGVERLLPMTCTNEGLNTWVARVTPDRTGWWSYRVEGWSDPYGTWEHDATIKVAADVDTELMLEEGALVLERALDEVERTAEQEKVLVDAIRTLRDAARPDLVRLKAGTDAAVERELADRPLRDMVSPSAEHALLVERERALYGAWYELFPRSEGARYDAADHRWVTGTLRTAAERLPAIAAMKFDVVYLTPIHPIGQAAKKGPNNTLDARPEDPGSPYAIGSPDGGHDAIHPDLGTFADFDAFVAEAERLGMEVAMDLALQCSPDHPWVEAHPEWFTTRADGTIAYAENPPKKYQDIYPLNFDNDPAGIYAEVRRVVQVWIDHGVKIFRVDNPHTKPVEFWQWIIADVAQDHPEVIWLAEAFTKPAMMHTLAKVGFQQSYTYYTWRSTAPELREYLQELAGESADYMRPSFWPTTHDILTPYMQFGGPAAWKVRSALAATLVPTYGIYAGYELMEHVARPGAEEQIDNEKYEFKDRGWADYEPGGPKEGRSLAGWLTMLNEVRRAHPALHRLRNIEFHHVDDENFLAFSKRRVLDDGTEDVVLVVANLDPHSTRASTLRLDMPALGLQAGDSFEAHDIVTGETWTWQRDVYVRLGPEVEPCHVIELRRPW
>NZ_CP053707.1|WP_173030093.1|1981975_1983709_-|maltose-alpha-D-glucosyltransferase
MGHSTPGLGMNQPGLRHDPEWFRTAVFYEVLVRAFGDSTGSGEGDFKGIINRLDYLQWLGIDCLWLPPFYASPLRDGGYDISDYTQVLPEFGTLPEFRELITQAHARGIRIVTDLVMNHTSDQHPWFQASRSDPDGPYGDFYVWSDTDDRYTDARIIFIDTETSNWTFDPIRRQFFWHRFFSHQPDLNFENPAVHEAIFDAVRFWMDMGIDGFRLDAVPYLYEEEGHNGENHPKTHDFLASLRRMVDTEYPGRILLAEANQSPSDVVDYFGTEDSPECQMCFHFPVMPMLYYALREEKAAPIIDVLADTPAIPAGTQWGTFLRNHDELTLEMVTPEQRAAMYGWYAPDPRMRANVGIRRRLSPLLDNSRPEIELIHALLLSLPGSPCLYYGDEIGMGDNIWLDDRDAVRTPMQWTPDRNAGFSTADPGKLYLPVVQSLVHHYNHVNVEAQMASGSSLLHWVRGMLSVRREHPVFGLGDFTVCDSSHDRVLAYTRVDRRDRDVEDRSAKAVLCINNLSSRPQAATVTLPEELAGWETRDLFGGTGFPDVSADGTLTVTLGSRDFFWLALEPPHGSDRG
>NZ_CP053707.1|WP_173028140.1|1980525_1981983_-|aminoglycoside-phosphotransferase
MAEIHTGASLTPSKQELVEEWMGSQRWYAAKGRRPRVRRLAAWRLDDPAGEVGIETMLVVDEAGDEPVVYQVPLTYRGEPLASADHALVGTLEHSVLGRRWVYDAPHDPAYATQLLELVQGRVPAASSSASDAVDDSVSGVPQPSWTSSVRVRSSRVLTGEQSNTSVILDTEDEDGTHVPLIVKVFRMLSPGDNPDVVLQGALVDAGSRRVPAVVGSVTGAWPHPGPEGDRPARGHLAFAQEFLPGVEDAWRVALRAAEDGTDFTGPARELGEATAEVHRTLAGVLGTEPTTPAQVDAILASMRSRFDAAVAAVPDLAAEGPAVEAVLAAAKSADWPALQRIHGDYHLGQVLRSPERGWVLLDFEGEPLRPLDERVLPDQWVRDVAGMLRSFDYVGGTLERIVGRSARTWVTDAQDAFLDGYAAEAGEDPRHRAAVLAAFELDKALYEVVYEARNRPEWLAVPRDAVTRLTARFSPASPPQGDLS
>NZ_CP053707.1|WP_173030092.1|1978303_1980520_-|1,4-alpha-glucan-branching-protein-GlgB
MPSPEVGGAITALVQGRHQQPHDLLGQHLEPTGLRIRVLRPMARSVRVRFEDGQELALKHEAEGVWTAVREGATRTMDYRLLVAWDDGIEHEQDDPYRFAPTLGEVDLHLVGEGRHEQLWTVLGARVHSYPGPMGDVRGTSFAVWAPRAKAVRVVGDFNGWDGRVHPMRQLGGSGVWELFVPGVGAGAVYKYEIRGADDVVRAKADPMARRTECPPRTGSVVDESSHAWQDDAWMEQRAARNPHTGPMSVYEVHLGSWRQGLTYRELAEHLVNYVTDLGFTHVELLPVMEHPYGPSWGYQVTGYYAPTARFGDPDDFKYLVDALHRAGVGVILDWVPGHFPRDEWALARFDGLPLYEHPDPRRGDQPDWGTHVFDFGRLEVRNFLVANAVYWLEEFHVDGLRVDAVASMLYLDYSRKDGEWIPNVHGGREHLEAIGLLQEANATAYKRVPGIVTIAEESTSWPGVTRPTSQGGLGFGLKWNMGWMNDTLRYLQEQPVHRQYHHNLLTFSLMYAFSESFVLPISHDEVVHGKGSLLTKIPGERPEQLATLRAFLGYMWSHPGKQLLFMGSEFAQPQEWADGRSLEWWLLDHAAHHRVHALVKHLNTVYREHPALWALDEQSAGFRWLDADDNTGNLLSYLRHERADGTGDVVVTAVNYSGEDKEWVRLGVPRSGDWEVVLDTSGFDEAGSPSQGGVVLSAEPTPWNDQPWSVTVRVARLSTVYLAPVPGTERPAAVLDI
>NZ_CP053707.1|WP_173028139.1|1977706_1978243_+|DsrE/DsrF/DrsH-like-family-protein
MTATDTTPLVPSFDDDSGSGRRLAIICSKGNLDMAYPGLILANAAVGEGVETHLFFTFWGFDIITRATMAHLKLSFVGNTAMHPPGHSEIGIHHMLGALPGATAAATRMMKKQIADLDVPDVPEFLELLTASGVHLWACRMSADMNHVTEDDLYEGVEGVISASDFIELTEGAQLLFI
>NZ_CP053707.1|WP_173028138.1|1977390_1977705_+|TusE/DsrC/DsvC-family-sulfur-relay-protein
MTTTTIAGHEVEVTDEGFLARPDDWSEDLAPELAALIGLRLDDEHWRLIRFLREDYAVQGETATLRRVSTQTGTPVKQLFALFPGKPAKKMAYVSGLPKPKGCV
>NZ_CP053707.1|WP_173028137.1|1976099_1977344_+|NAD(P)/FAD-dependent-oxidoreductase
MSGTRKHLLVLGAGTAGTMVVNKLRKRLPADGWGITVVDRDDVHDYQPGYLFIPFGLTTPEQVRRTRRPLIHDGVDVVLGAVERVDTEAHEVHLEDGRVLPWDQLVIATGTSPRPEETEGTLGPQWHREVGEFYTYEGAIALHDQLDTFAGGRLVVHITELPIKCPVAPLEFTFLADDWLRRRGLRERTELVFVTPLDGAFTKPVASRTLGSLLEEKGITVEPDFLVERIDQERKVLVSYDEREVAYDQLVTVPLNKGADFVAASGLGDELGYVPVDKHTFLATGHDDVFALGDASNIPTSKAGSVAHFSVEVFVENFLEHVAGRPMTHSFDGHANCFVESGHGKALLLDFNYDTEPLTGTFPLPRVGPLRLLGESRANHLGKLAFRHVYWNALLPGRPLGLPAEMSMAGKNPA
>NZ_CP053707.1|WP_173028136.1|1974318_1975983_-|alpha-D-glucose-phosphate-specific-phosphoglucomutase
MTSSRAGQPAQPSDLVDVAALVTAYYTREPDPEDVDQQVAFGTSGHRGSSLRTSFNEAHILATTQAICDYRREQGYDGPLFMGRDTHGLSEPAWSSALEVLAANDVTVLVDSADRYTPTPAVSHAILVANRGKVSGVDDMPAGRGLADGIVVTPSHNPPSDGGFKYNPPHGGPADSDATKVIAAAANAYLRAGLEGVRRIPFARARAAARSHDFMGHYVDDLPNVLDLDAVREAGVRIGADPLGGAAVDYWGAIAERHRLDLTVVNPLVDPTWRFMTLDWDGKIRMDCSSPSAMASLIERRDEYDVATGNDADSDRHGIVTPDAGLMNPNHYLAVAIRYLYGGARPQWREDGFIGKTLVSSSMIDRVAVDLGRRLVEVPVGFKWFVPGLLDGSGPFGGEESAGASFLRHDGSVWTTDKDGILLALLASEIIARTGRTPSEHYGDLVARHGEPAYARIDAPADRAQKAKLAALSPADVAAETLAGEPITAKLTEAPGNGAAIGGLKVVTESAWFAARPSGTEDVYKIYAESFRGPDHLAQVQAEAKDVVSAALGG
>NZ_CP053707.1|WP_173028144.1|1990260_1990788_+|hypothetical-protein
MQRFVWVAWGLLVVVVDLPLAGWDVLPDLVGYAWVIIGLAGSASVHPAFVRARAAAVVGIPVWAVLGTPLFASPRYGTLLLTALTVEIVVVTLLVHQVCTGILATAPASDPDSTRWARILRVAALVVGVLMIIALVLTAGGLRLYPLVFLASVVVGVLTVILVQRVARAGWIATA
>NZ_CP053707.1|WP_173028145.1|1990867_1991758_-|phytanoyl-CoA-dioxygenase-family-protein
MTATAPAPTGFEPLDPAIREQYDRDGFVVIKGALPEEDRAYFENAVDRIYAEEEAAGELRPDRSIHVMGWLHKDPRFAELLSWPTTFPYIWGTMGWNIYTHHNHIDVNPPKDEPPFWNWHQDGYRQNSDIDMDVRPMFMTKICYALTDLSEPGYGNTKVIPGSHKSNTLEGRPEKPGDPIIEPEGAVEVLLEPGDAFIFDRRLWHSRSMNKSERIRKLMFIGYTYRWIRPLDEAVADQSSEWFQGLSPLHQQLLGYGPDHASFWGIKQSGWIDDEIPLRAELKERGLLDRAIPFLR
>NZ_CP053707.1|WP_173028146.1|1991868_1993998_-|glycogen-debranching-protein-GlgX
MPTRPAPPGPTTRDLPPPPGVTLVPGGADVAVYAGHAEAVDVCLFEAGDTAGTSERRVALRERAHGWWFGFVPGMGPGTRYGLRVDGPWEPDHGLHHNPTKLLLDPYAGAVEGAVAWGPEVYAHRVDEQWRGDLEQRSSLDSRGHVPRGVVVDHAFDWAGDAPPLRSRSETVVYEAHVRNQTMLLPGVPEHLRGTYAGLAHPASVEHLLSLGVTTIELLPVHAFTHEPHLVQRGMTNHWGYNTLGFMAPHARYAAASDPQGVVDEVKGMVKLLHAAGLEVVLDVVYNHTAEQSRSGAMLSWRGLDQRAYYRLDERGRDIDVTGCGNTLDLRHPVVCRMVLDSLRHWVQTYHVDGFRFDLAVALGRGRGDDYDPDHPFLVALRTDPVLSRVVLVAEPWDLGIHGWRTGQFPPPFLEWNDRFRDATRRFWVGDVRAQSLGERGHDARELATRLSGSRDLFGARDRGPTASVNFVTAHDGMTLADLVAYDRKHNDANGEDNRDGTDGNGSWNHGVEGPTDDAAVLAARTRALRNLLATLLLSQGVPMITAGDELGRSQGGNNNPYCQDNEVSWVDWELAPWQADLLETTRHLLALRRRLPVLRQRTWLTGREVDDEGTLDVAWYAADGRPMGDRWHGEGTRVLQMALAPPVDGSTAALLVVHGGGGSVEVTLPPGAHRVLFDSEWERPRGEEAPHEGTVTVTGPSVRLYVPA
>NZ_CP053707.1|WP_173028147.1|1994045_1995467_-|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme
MSATDTPARPYPAHDPATYRRLPASSRPVDPARVESLLAAEWERFAASTPASGEHNTRAARTLPLGVTSSFQHWDPYPVSVASARGAWLTDVDGRRMLDLSMGFGAMLVGHLNPTVVEHVQRALTDTGTLFVTPSPQATEMSERFCERFGLDMVRFTNSGTESLMYAIRAARAFTGRKAVVKIEGGYHGGYDALQVSVKPALEDIGPAEAPVPEVPFDVEAGTVHVVPYNDLDRLRAILAEHGREIAVMVVEPVVENLSIVVPDAGYLAGVRELCDEHGVVLLFDEVKTGLTAGYAGAAQRLGVKPDLITLAKSIGGGLPLAAFGGRRDVMEVVVDGRMAHFGTYNGNPLVMAAAKAVDEICTPEALAATEAINVRALSRIDDVIDTFELPAHTVGLGVKGCVTWSTAPVRTYRDYKATDFAMAELSWLWGVNRNILTPPGLDEQWLVSLAHTDEDMDLLVEHVRELAEALRA
>NZ_CP053707.1|WP_173028148.1|1995541_1996897_+|enoyl-CoA-hydratase/isomerase-family-protein
MYYRIRGRGESREVRRRGPPPDPGRSPVGERSIRWGHDRPHLAAQLPAARERAPAARPGPRRPRRPRARPEPRRRRGRGLHGQRPAAVRPLHRGRRRDHAPLRPVADPGRADGRPPQAPRDVQRAQPAHEPREDRHRGHDPRRHRRARRHAGRRPLDAHPGLHPGRALRGPPLAPAHPRHRPRDRPADRGRAVTDLVRLEVADGIGTIRLERPPMNALNAEIQHGLVAACREAAERRDVAAVVVWGGEKVFAAGADIKEMETMSYTDMVDHSALLQDFTKALAGLPKPTVAAITGYALGGGCEVALACDWRVAADDAKLGQPEINLGIIPGAGGTQRLARLVGPAKAKDLVFSGRFVDAQEALAIGLVDRVVPASEVYEASRSLVARYVGGPAYAIRAAKEAIDRGLEVDLETGLEIERVLFAGLFATKDQSIGMRHFVEKGKGPAPFEGA
>NZ_CP053707.1|WP_173028149.1|1996968_1997649_-|zf-HC2-domain-containing-protein
MSTPTDHEALRTALGPYVLGDLPADEVPALEAHLDGCAACTAELAALTPVAAALGGLRGTRPALPQPPPDLADRVGAAVAADARRGAPGSGLARRAGTLLVAAAVGAALTLGVTRLVTDPAAPVVPVEAVPVAVGAPGLVASAGLVPHTWGVEVKLTASGFTAGDRYRVVVLGPDGAAFPAGEFVGTGERTMRCNLNSSVLRERASGFEVLGDDGRVLVRSAFPRA
>NZ_CP053707.1|WP_173028150.1|1997645_1998191_-|sigma-70-family-RNA-polymerase-sigma-factor
MLVRRPRTPSSLTEEGVREAYAAHGAELYRFALRGLGDGGLAQDAVQETFLRAWRARERYDPSVAALRTWLFGIARNVVIDLHRVREARPWLRDLSDHEGLERHAPATDGWDALLHGWLVEEALGRLGEAHRQALTETHLAGRPYGEVAAELGIPESTLRSRVFYGLKALRVAMEEMGVER
>NZ_CP053707.1|WP_173030094.1|1998203_1998980_-|DUF4394-domain-containing-protein
MAPAATATLLHSPDAVGLAGTKTLVSVDLDRPGSARSLGAVTGLTQDTRLVGLDHRPADGRLYAVGDRGGVYTVAVPERRLLFTKAPRATLVNRLTVALDGKHFGVDFNPAADRLRVISDTGQNLRHDVNPGGTTIADTPLNVTGATTASTGVTAAAYTNPDTDAATATTLFDIDTKADQVVVQSPANAGSLAPTGSLGVDATRGGMDIDRRNRAYAALEVDGRAGLYRVDLLTGKATREGWFPRGTQVLDLAVPTGR
>NZ_CP053707.1|WP_173028151.1|1999318_2000107_+|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNIVVCVKHVPDAQSDRTFQESDNTVDRAVDGLLSELDEYAVEEALKIVEAAGEGEVTVVTVGPAAAADALKKALQMGAHKAVHVQDDAIHGSDAVGTSLVLAKAVEKATDGSPELVLTGMSSTDGVMGVVPAMLAERLGLPQVTYASELTVGEGRVTIRRDGDVASETIEAALPALVSVTDQINEPRYPSFKGIMAAKKKPVETWSLADLGVDADDVGLGAAWTSVVAFAKRPPREQGQIVTDEGEGGAKLAEFLSAQKFL
>NZ_CP053707.1|WP_173028152.1|2000139_2001099_+|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MAEVLVLADYAGGRLRKATAELLTLARRLGEPSAVHVGPGAEAAQKTYAKYGAHKVYVVDDADAASYLVAPQAEVLAQLIEKTSPAAVLIPSNAAGKEIAARLAIKAGSGMITDAVDVRAGEDGTPETTQSVFAGSYTVTAKVTTGTPIICVKPNSASIEAAPEAGTIEAVDVTVSDAAKAARITDSQPKKATGRPELTEAAIVVSGGRGTGGDFNPVEEFADSLGAAVGASRAAVDAGWYPHSNQVGQTGKQVSPQLYVAAGISGAIQHRAGMQTSKTIVAVNKDEEAPIFELVDFGVVGDLFAVLPQATTEVRKRKG

Crispr_ID: NZ_CP053707_9

• CRISPR_ID: NZ_CP053707_9
• CRISPR_location: 2235348-2235487
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 2 spacers

Consensus repeat of NZ_CP053707_9

Consensus_repeat	Method
CGCGTATCGGGTCACCCGATACGC	CRISPRCasFinder

spacers of NZ_CP053707_9

>9.1|2235372|38|NZ_CP053707|CRISPRCasFinder
CCGCGCCTCACCCCGGAACCGTTCCCGGGTGAGGCGCA
>9.2|2235434|30|NZ_CP053707|CRISPRCasFinder
ATGATGTCCGGATGCGTCGCGCGGCCGCGA

CRISPR arrays and Neighbor proteins around NZ_CP053707_9

CRISPR arrays

The CRISPR arrays of NZ_CP053707_9

>merge|NZ_CP053707|9|2235348-2235487|CRISPRCasFinder
CGCGTATCGGGTCACCCGATACGCCCGCGCCTCACCCCGGAACCGTTCCCGGGTGAGGCGCACCGGTATCGGGTCACCCGATACGCATGATGTCCGGATGCGTCGCGCGGCCGCGACGCGGGACGCGTCAGCCGATGCGC

>NZ_CP053707|9|7|2235348-2235487|CRISPRCasFinder
CGCGTATCGGGTCACCCGATACGC	CCGCGCCTCACCCCGGAACCGTTCCCGGGTGAGGCGCA
CCGGTATCGGGTCACCCGATACGC	ATGATGTCCGGATGCGTCGCGCGGCCGCGA
CGCGGGACGCGTCAGCCGATGCGC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053707.1|WP_173028335.1|2222910_2223243_+|PadR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224609
NZ_CP053707.1|WP_173028343.1|2236404_2237712_+|glutamate-5-semialdehyde-dehydrogenase	unknown	unknown	gnl|CDD|234685
NZ_CP053707.1|WP_173028347.1|2240496_2241156_+|histidine-phosphatase-family-protein	unknown	unknown	gnl|CDD|366010
NZ_CP053707.1|WP_173028340.1|2232656_2234180_+|GTPase-ObgE	unknown	unknown	gnl|CDD|237045
NZ_CP053707.1|WP_173028341.1|2234185_2235319_+|glutamate-5-kinase	unknown	unknown	gnl|CDD|235460
NZ_CP053707.1|WP_173028349.1|2242014_2244204_+|catalase/peroxidase-HPI	unknown	unknown	gnl|CDD|237891
NZ_CP053707.1|WP_030528061.1|2232288_2232555_+|50S-ribosomal-protein-L27	unknown	unknown	gnl|CDD|235464
NZ_CP053707.1|WP_173028350.1|2244302_2244908_-|DNA-3-methyladenine-glycosylase-I	unknown	unknown	gnl|CDD|377025
NZ_CP053707.1|WP_173028345.1|2239538_2240123_+|nicotinate-nucleotide-adenylyltransferase	unknown	unknown	gnl|CDD|234611
NZ_CP053707.1|WP_173028346.1|2240119_2240500_+|ribosome-silencing-factor	unknown	unknown	gnl|CDD|376779
NZ_CP053707.1|WP_173028339.1|2231942_2232251_+|50S-ribosomal-protein-L21	unknown	unknown	gnl|CDD|235510
NZ_CP053707.1|WP_173028336.1|2223267_2224230_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP053707.1|WP_173030119.1|2224416_2226381_+|S8/S53-family-peptidase	unknown	unknown	gnl|CDD|173788
NZ_CP053707.1|WP_173028351.1|2244904_2246050_-|metallophosphoesterase	unknown	unknown	gnl|CDD|277331
NZ_CP053707.1|WP_173026455.1|2239272_2239527_+|hypothetical-protein	unknown	unknown	gnl|CDD|320552
NZ_CP053707.1|WP_173028337.1|2226459_2227827_-|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl|CDD|235917
NZ_CP053707.1|WP_173030120.1|2229222_2231769_+|Rne/Rng-family-ribonuclease	unknown	unknown	gnl|CDD|273254
NZ_CP053707.1|WP_173028348.1|2241515_2241947_+|transcriptional-repressor	unknown	unknown	gnl|CDD|223806
NZ_CP053707.1|WP_173028338.1|2227994_2228753_+|DUF2344-domain-containing-protein	unknown	unknown	gnl|CDD|274865
NZ_CP053707.1|WP_173028344.1|2237696_2238698_-|glycosyltransferase-family-2-protein	unknown	unknown	gnl|CDD|133030

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP053707.1|WP_173028335.1|2222910_2223243_+|PadR-family-transcriptional-regulator	gnl|CDD|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	3.64965e-13
NZ_CP053707.1|WP_173028343.1|2236404_2237712_+|glutamate-5-semialdehyde-dehydrogenase	gnl|CDD|234685	PRK00197, proA, gamma-glutamyl phosphate reductase; Provisional.	0
NZ_CP053707.1|WP_173028347.1|2240496_2241156_+|histidine-phosphatase-family-protein	gnl|CDD|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	3.46243e-58
NZ_CP053707.1|WP_173028340.1|2232656_2234180_+|GTPase-ObgE	gnl|CDD|237045	PRK12296, obgE, GTPase CgtA; Reviewed.	0
NZ_CP053707.1|WP_173028341.1|2234185_2235319_+|glutamate-5-kinase	gnl|CDD|235460	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional.	4.09899e-179
NZ_CP053707.1|WP_173028349.1|2242014_2244204_+|catalase/peroxidase-HPI	gnl|CDD|237891	PRK15061, PRK15061, catalase/peroxidase.	0
NZ_CP053707.1|WP_030528061.1|2232288_2232555_+|50S-ribosomal-protein-L27	gnl|CDD|235464	PRK05435, rpmA, 50S ribosomal protein L27; Validated.	5.97548e-49
NZ_CP053707.1|WP_173028350.1|2244302_2244908_-|DNA-3-methyladenine-glycosylase-I	gnl|CDD|377025	pfam03352, Adenine_glyco, Methyladenine glycosylase. The DNA-3-methyladenine glycosylase I is constitutively expressed and is specific for the alkylated 3-methyladenine DNA.	3.43881e-108
NZ_CP053707.1|WP_173028345.1|2239538_2240123_+|nicotinate-nucleotide-adenylyltransferase	gnl|CDD|234611	PRK00071, nadD, nicotinate-nucleotide adenylyltransferase.	1.9517e-106
NZ_CP053707.1|WP_173028346.1|2240119_2240500_+|ribosome-silencing-factor	gnl|CDD|376779	pfam02410, RsfS, Ribosomal silencing factor during starvation. This family is expressed by almost all bacterial and eukaryotic genomes but not by archaea. Its function is to down-regulate protein synthesis under conditions of nutrient shortage, and it does this by binding to protein L14 of the large ribosomal subunit, thus acting as a ribosomal silencing factor (RsfS) by blocking the joining of the ribosomal subunits. This family is structurally homologous to nucleotidyltransferases.	1.54876e-44
NZ_CP053707.1|WP_173028339.1|2231942_2232251_+|50S-ribosomal-protein-L21	gnl|CDD|235510	PRK05573, rplU, 50S ribosomal protein L21; Validated.	4.67533e-40
NZ_CP053707.1|WP_173030119.1|2224416_2226381_+|S8/S53-family-peptidase	gnl|CDD|173788	cd04056, Peptidases_S53, Peptidase domain in the S53 family. Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase.	3.34288e-73
NZ_CP053707.1|WP_173028351.1|2244904_2246050_-|metallophosphoesterase	gnl|CDD|277331	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	1.45363e-68
NZ_CP053707.1|WP_173026455.1|2239272_2239527_+|hypothetical-protein	gnl|CDD|320552	cd15436, 7tmB2_Latrophilin, Latrophilins, member of the class B2 family of seven-transmembrane G protein-coupled receptors. Latrophilins (also called lectomedins or latrotoxin receptors) belong to Group I adhesion GPCRs, which also include ETL (EGF-TM7-latrophilin-related protein). These receptors are a member of the adhesion family (subclass B2) that belongs to the class B GPCRs. Three subtypes of latrophilins have been identified: LPH1 (latrophilin-1), LPH2, and LPH3. The latrophilin-1 is a brain-specific calcium-independent receptor of alpha-latrotoxin, a potent presynaptic neurotoxin from the venom of the black widow spider that induces massive neurotransmitter release from sensory and motor neurons as well as endocrine cells, leading to nerve-terminal degeneration. Latrophilin-2 and -3, although sharing strong sequence homology to latrophilin-1, do not bind alpha-latrotoxin. While latrophilin-3 is also brain specific, latrophilin-2 is ubiquitously distributed. The endogenous ligands for these two receptors are unknown. ETL, a seven transmembrane receptor containing EGF-like repeats is highly expressed in heart, where developmentally regulated, as well as in normal smooth cells. The function of the ETL is unknown. All adhesion GPCRs possess large N-terminal extracellular domains containing multiple structural motifs, which play critical roles in cell-cell adhesion and cell-matrix interactions, coupled to a seven-transmembrane domain. In addition, almost all adhesion receptors, except GPR123, contain an evolutionarily conserved GPCR-autoproteolysis inducing (GAIN) domain that undergoes autoproteolytic processing at the GPCR proteolysis site (GPS) motif located immediately N-terminal to the first transmembrane region, to generate N- and C-terminal fragments (NTF and CTF), which may serve important biological functions.	0.00691533
NZ_CP053707.1|WP_173028337.1|2226459_2227827_-|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme	gnl|CDD|235917	PRK07046, PRK07046, aminotransferase; Validated.	0
NZ_CP053707.1|WP_173030120.1|2229222_2231769_+|Rne/Rng-family-ribonuclease	gnl|CDD|273254	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family. This model describes ribonuclease G (formerly CafA, cytoplasmic axial filament protein A), the N-terminal domain of ribonuclease E in which ribonuclease activity resides, and related proteins. In E. coli, both RNase E and RNase G have been shown to play a role in the maturation of the 5' end of 16S RNA. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome. [Transcription, Degradation of RNA].	0
NZ_CP053707.1|WP_173028348.1|2241515_2241947_+|transcriptional-repressor	gnl|CDD|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	6.45533e-35
NZ_CP053707.1|WP_173028338.1|2227994_2228753_+|DUF2344-domain-containing-protein	gnl|CDD|274865	TIGR03936, radical_SAM-linked_protein, radical SAM-linked protein. This model describes an uncharacterized protein encoded adjacent to, or as a fusion protein with, an uncharacterized radical SAM protein.	1.56879e-68
NZ_CP053707.1|WP_173028344.1|2237696_2238698_-|glycosyltransferase-family-2-protein	gnl|CDD|133030	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.	3.99013e-75

Protein sequences

>NZ_CP053707.1|WP_173028341.1|2234185_2235319_+|glutamate-5-kinase
MPATAAAALRRAVGAGRRLVVKVGSSSLTSADGGRLDLDALGALVDVLAGRRAAGHQVVLVSSGAIAAGIGPLGLDRRPSDLATQQAAASVGQGALVAAYQAAFSRHGLTVGQVLLTADDTTRRSHYTNARRTLERLLELGIVPIVNENDTVATQEIRFGDNDRLAAVVADLVGADGLVLLTDVDSLYDGPPSKGGSRRVPLVATDADLEAVTIGGTGSAVGSGGMVTKVEAAGIAGAAGIPTLLTRLVDVSSALSGADVGTVFAPAAATRASRKRWLAHATSAKGRLVIDDGAVTAVTERRTSLLPAGITDVVGSFAAGDPVDVCATDGRVIARGLVTYASTELPRLLGRSTRDLARELGPGYEREVVHRDDLVVL
>NZ_CP053707.1|WP_173028340.1|2232656_2234180_+|GTPase-ObgE
MATFVDRVVLHVSAGNGGHGVASVKREKFKPLGGPDGGNGGRGGSVVIAVDPQATTLLDYHHTPHRRADNGKPGAGDERNGADGGDLVLNVPEGTVVKTADGQVLADLVGFDATYVVARGGRGGLGNKALASARRKAPGFALLGEPGDSLDVVLELKSLADVALIGFPSAGKSSLVSVVSAARPKIADYPFTTLVPNLGVVTAGSARYTIADVPGLIPGASEGKGLGLEFLRHVERCSVLVHVVDCATLEPNRDPMTDLDVIEAELAAYVADDSLGGRPLSERTRIIVLNKADVPEARDLAEMVKPMLEERGLEVFIVSAVAHTGLKELTFALARHVAQARAEIEAAVVERPRVVIRPTAVDDSGFHVRREETPEGEVFRVLGERPTRWVHQTDFSNDEAVGYLADRLSRLGVEEALLKAGAVSGSTVLIGAVDDSVVFDWEPTMASGAELLAGPRGTDVRFEDSGRKSRSEKRDEFHGRKDAQTAARDELAAERRAGHWATAREED
>NZ_CP053707.1|WP_030528061.1|2232288_2232555_+|50S-ribosomal-protein-L27
MAHKKGASSTRNGRDSNPQYLGVKRYGGQVVKAGEIIVRQRGTHFHPGDGVGRGGDDTLFALVPGAVTFGTKRGRKTVNITPVETVAV
>NZ_CP053707.1|WP_173028339.1|2231942_2232251_+|50S-ribosomal-protein-L21
MYAIVRAGGRQEKVSVGDTLLIDKQTGVAGDKIQLQPLLLVDGGTVTSDAAKLAKVTVTAEVVKAAKGPKIVILKYKNKTGYRKRQGHRQPLTQVKITAIDA
>NZ_CP053707.1|WP_173030120.1|2229222_2231769_+|Rne/Rng-family-ribonuclease
MAEPLPELVPLAEEPLVEADPLTEEETPEPAAEDAAPAGPAFGLVFQAPEVTVAPRRRRATAPAQAPAEKPVDSTPVEQPAESAPAAEATPEAAPTERSAPSEGPDAADDGEGGSRGRRRRGGRGRRARGKGEDEQAPAADQDGDTPAAEDEAPARGGRGGRQAAADDTDAEGEGDSSSSRRRRRRRRGGAGGEGDDPPGTVTRVREPRAERDEPTAVKGSTRLEAKKQRRREGREAGRRRTIITEAEFLARRESVERTMVVRGREGRTQIGVLEDGVLVEHYVSRETTASMAGNVYLGRVQNVLPSMEAAFVDIGKGRNAVLYAGEVNWDAAGLEVNQAKRIENALKSGDTVLVQVTKDPIGHKGARLTSQISLPGRYVVYVPEGSMTGISRKLPDTERARLKAILKEVVPDGAGVIVRTAAEGASEADLKADVERLMKQWERIEKKAASAKAKKSGSGGAPALLHGEPDLTIRVIRDVFTEDFASLVVSGEKAWGEVSEYVEDVAPDLAQRVSRWTSDDDVFAAHRIDEQIAKAMDRKVWLPSGGSLVIDRTEAMTVVDVNTGKFVGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLVVRRLLECLGRDRTKHQVAEVTSLGLVQMTRKRVGSGLIEVFSEQCEHCSGRGIVVHTEPIDRSGGQQGGGHGSSGDSGRSSGRSGRRGGSGATGGGAPSGGGSTPPPAKEAPAPEPARPLGGPTAAQIAAAAHAAALKHTDPADVAAEIAAAVTAPVTEEPAVEPAPVVEPAPEPVVEPAPVQAPAPVVEATQPAAEAAPAPRARRKRGRVVAPAGPPPGAADAPADGDA
>NZ_CP053707.1|WP_173028338.1|2227994_2228753_+|DUF2344-domain-containing-protein
MARQRTPEGPPPPPAVQKLRIRYAKRGRLRFSSTRDFSRALERALRRAGVPMAFSAGFHPHPLISYANAAPTGTASEAEYFEIRVTERVDPEAVRAALDEALPVDLDVVEVVEAGPGALADRLEASEWDLRLRGATPDDLEPVVAAYLAAERAETTRTFKSGPRTFDTREAVLDLHVAGSDEEGCAILRMVVRHTTPSVRPDDILTALHAVTGFAPPVAPLVTRLAQGPLREDRAGVADPLAADREAVGPER
>NZ_CP053707.1|WP_173028337.1|2226459_2227827_-|aminotransferase-class-III-fold-pyridoxal-phosphate-dependent-enzyme
MPSTDRARLAQLLAAEQEQYTADHPRSRALFEAGGNLFGRVPMTWMNKWSGGFPLYLDHARGNRITDVDDHTYVDFALGDTGAMAGHSPAPTAAAVARRMGELGGITTMLPSEDAQWVGEELTRRFTMPLWSFTLSATDANRWAVRLARLATGRSKILVFGYCYHGSVDETFAIPGPDGSTVSRPGNVAPPVPLDLTTRAATWNDLASVERELAHGDVAAILTEPALTNIGIVLPEPGFLEGLRELATRYGALLMIDETHTFSAGWGGATRAWDLQPDIFVIGKSIGGGIPCGAYGITEEVARAVTRHTDAGEADIIDVGGVGGTLAGNALSTAAMRATLAEVLTEDAFAHMTGLATAFTEGVQSTLDEYDVPWSVSRLGARSEYRFARPAPRSGEEAAAAHDDDIDAYMHLAMVNRGILMTPFHNMALMCPDTTREDVDLHTRTFREVVGALYG
>NZ_CP053707.1|WP_173030119.1|2224416_2226381_+|S8/S53-family-peptidase
MGAAVLAATGAGAVGAGAAAAAPHGTGRHAVSPAPAWTARAQAQRSAAATAGPTTRVKVWLAPRDRAALERLAATVSDPTSAQYGHYLGTAQYAARFAPTSATVSAVGGWARGAGLHVDAVGTDNHFVQLSGSREAVSSAFTANLRTFTLDGATGTAPTSTVTVPDALGGQVLAVTGLDTVTHRTRPAQEGGRGTTSTSTASPSDLGPPAGFVNSTTCGAYYGQKVDRADPAFEGKHLPYSVCGYTPKQLRSAYGVTATHRTGKGETVAITDAFAAPTIEEDANTYATRHGDKAFRRGQFTQANDTTYDPTKVEECGGNGWFGEETLDVEAVHGMAPDAKVAYYGAASCYDDDLLNSIARVVHDNKASVISNSWGEPTYVVVDGVKTPTIDDALVQAYESVILQGAVQGIGTYFSSGDDGDEGANTGVVSPDWPAADPYVTAVGGTALAIGKDGRRQFETGWGTDKYTLDQGAWGPVGYLYGAGGGCSDRFTKPFYQQHTSTGCAMRGVPDVAMDADPTTGMLVGETQVFDGPTRFGQGVRYGEYRIGGTSLASPLMAGLQADVQQTRGRIGFANPSLYRLARTAGVFHDVRPEGDRGNVRVDYVNGLNADDGLVSSVRTFDDDSSLTTGRGWDDVTGVGTPTARYLTTASRRH
>NZ_CP053707.1|WP_173028336.1|2223267_2224230_+|hypothetical-protein
MGTLTDRYVTATVRELAPDQRDDVDRELRGTIEDMVEARLDAGPTADRDEVERAVLVELGDPMRLAAGYSGRPLHLIGPTVYPEWRRLVVLLVSVVVPLAAVGTLVVRLFTDDVAADGVGPAFGGAALAGLTTAFHVVFWTTLVFAILERTQPDTGVMGWTPDQLPEAPVSRRSVGRSETVLSVVALVVMALALVWQRTSSPVRVRGEAVPVLDPALWSGWLPLLLGLLAAHAALALVAFRARRWTWPTVAVGVALDVAVAALLVGLAQTDRLFAPGFVEALVDGGWATAGRDLRVATVLGVLVVTLWDQVETGRRMLSR
>NZ_CP053707.1|WP_173028335.1|2222910_2223243_+|PadR-family-transcriptional-regulator
MTSIDDPALAGHLQELRRGTVVVAALASLRTAGYGYALLETLGRSGFEVDANTLYPLLRRLEKQGLLTAEWNTQESRPRKFYRTSPAGEDVLTALRADWRALDAAISDLA
>NZ_CP053707.1|WP_173028343.1|2236404_2237712_+|glutamate-5-semialdehyde-dehydrogenase
MSDRTATGADQGPSAADVEQVRVLAEAARTASRRLALLSRAEKDAALHALADALDAATDEVVASNARDLARGREHGMAESLQDRLRLDPPRVAAVAQALRDIAALPDPVGEVVRGSTLANGLQIRQVRVPMGVVGMIYEARPNVTVDAAGLGLKSGNAVILRGGSAAAETNRATVAVLRAALERQGLPADAVALLDGGHSVVTALMTARGLVDLLIPRGGADLIQAVVTGSTVPVIETGIGNCHVYVDAAADLDKALAITVNAKTHRPSVCNAAESLLVHRAVAEAFLPKALAALAAEGVVLHTDERASTSAQAAGVTHDAATDEHFATEFHGLEMSVGVVDDLDAALTHIRRFGSGHTEAIVTEDRGAARRFTAEVDAAAVMVNASTRFTDGGEFGFGAEIGISTQKLHARGPMALPELTSTKWVVEGDGQVRV
>NZ_CP053707.1|WP_173028344.1|2237696_2238698_-|glycosyltransferase-family-2-protein
MSESPVLTVVVPMYDEQEVLPLFVDRLRPLAESWGVPYEVLCVDDGSGDATPVLLQRLRREWPQLRVVRLRANAGHQAAISAGLVLARGDYVVTIDADLQDPPETIGEMLRVARAEGVDVVYGVREDRSSDTAFKRLTARAFYRSIRALSDVDAHVDAGDFRLMSRATVEAVNALPEGNRVLRLVVPALGFPSASVGYRRAPRAAGESKYPLAKMVRLSVDAVTGFSIAPLRFATWLGLLGGLAAVVVLVYALVAMLLGNTLPGWTSTVVIVSAVGAVQLLAVGILGEYVGRTYSALQARPAYFVAHDSLEQEVAHHDEERPLPRAASGQTRT
>NZ_CP053707.1|WP_173026455.1|2239272_2239527_+|hypothetical-protein
MSSTTFLIAAEEAHRELPIPPWMIGIIALLAFAFLLGVTWSFRGTHNKYARPEYGDGTPAGSRTATGDAGAHEDSHWPEHPGHH
>NZ_CP053707.1|WP_173028345.1|2239538_2240123_+|nicotinate-nucleotide-adenylyltransferase
MRLGVMGGTFDPVHHGHLVAASEAQALLGLDEVVFVPTGQPWQKDEREVSPAEHRYLMTVVATASNPRFTVSRVDVDREGPTYTVDTLRDLRAQRPDAELFFITGADALAQILSWKDADELFELAHFVGVTRPGYVLSELGLPGERVTLQEVPAMAISSTDCRERVRAGEPVWYLVPDGVVQYISKHHLYRGAP
>NZ_CP053707.1|WP_173028346.1|2240119_2240500_+|ribosome-silencing-factor
MTASDRSLELARAAATAASDKLATTISGIDVSEQLALTDVFVIVSAESERQVGSIVDEVEDVLRERGVKPIRREGQREGRWVLIDFGDIVVHVQHDEEREFYELERLWRDCPALDLGVVGTEQGGR
>NZ_CP053707.1|WP_173028347.1|2240496_2241156_+|histidine-phosphatase-family-protein
MSPDGLGPRRLVVLRHGETTHNAAGIWQGQLDSPLSELGEQQAAAVGPALASLRPSRVVTSDLQRARRTGESVARACGVPLVEDARFREIHAGAWQGLTNAQVTERWPDERAAVLRGEDVPRGGDGESMADVVTRVGEGLQALVGSMAAGECVVVSTHGAAGRAAVAWLLGLEQELAWRVLGSLGNCHWAELVEGRQGWRLQAWNASSGAPSRPGTSPP
>NZ_CP053707.1|WP_173028348.1|2241515_2241947_+|transcriptional-repressor
MAADVDLPGLLRDAGLRVTRPRLEVLAAVHAHPHADTGSILRAVRGPLPAVSHQAVYDSLHALTQARLVRAFQPAGSVARYEARVGDNHHHVVCRTCGAVADVDCAVGEAPCLSAADDHGFAIDEAEVVYWGTCPDCAAARPA
>NZ_CP053707.1|WP_173028349.1|2242014_2244204_+|catalase/peroxidase-HPI
MTDQQQGVTSQGSESENPAIDAPTPKAGAPRTNQDWWPNLLDLSVLHTNNAKGNPLGGDFDYAQAFAGLDVDALKADIVQVMRTSQDWWPADYGHYGPLFIRMSWHAAGTYRVEDGRGGGGRGQQRFAPLNSWPDNANLDKARRLLWPVKQKYGQAVSWADLLVLAGNVALEDMGFETFGFAFGRSDVWEPEEVNWGTEDTWLGDERYSGERELSNPLGAVQMGLIYVNPEGPNGEPDPVKAARDIRETFKRMAMNDEETVALIAGGHTFGKTHGAGDPDLVGTEPNGCPVHAMGLGWKSEYGSGKGSDAITSGLEVTWTQKPTEWTNLYFDNLFGYEWELVKSPAGAWQWEAKDADASVPDPDGTPARRKPTMLTTDLSLRFDPEYEKISRRFHENFEEFRLAFAKAWYKLLHRDMGPVDRFLGPWVPEAQPWQDPVPAASGEPLTDGDVADLKEALLSSGLTVQQLVKTAWASAASFRKTDMRGGANGARIALEPARSWEVNEPAELASVLEVLDRVKADFDGRGGRTVSLADLIVLGGSAGIEKAARDAGREVTVPFTPGRTDATQELTDVESYSYLEPRADGFRGYLRHEEKIAPEGLLLDRAYVLGLSAPQMVALVGGLRAIGATYGNTSVGVLTQRPGQLTNDVLAAVLEPGVTWSTSRDTANVYDSNDGRQATAVELVLGSHPQLRAIAEVYGSADGDQRFVDDFVAAWVQVMENDRFDLHR
>NZ_CP053707.1|WP_173028350.1|2244302_2244908_-|DNA-3-methyladenine-glycosylase-I
MTDAGTVVGDDGLARPVWAASDPLLQHYYDTEWGMPVRDERGLFERLSLEAFQSGLSWATILRKRPAFRAAFDGFDPEVVARYGDDDVARLMADAGIVRNRAKVLATITNARATLDLREDPDGDLARFVWSFRPDDTPRPHTLAEVPTSSAESLALSKALKRKGFVFVGPTTMYALMEAVGIVDTHLLGSHRRGTSGVWPD
>NZ_CP053707.1|WP_173028351.1|2244904_2246050_-|metallophosphoesterase
MSVLAALVPVVVLGGFLAFVWHRLAVAPRWGRRWVPWLVALVLAALVAAVLEQFDVWGGAWSAATMRPVAWTGAAFLATCLYLFLGLVPVALVSGAIWLLRWRHDHGRDARRRFNRVAAPLVAALAVGLTGYGAWEASRPSATPFEVASAELPAQFDGTRVALLTDLHAGAVRSAGFTRKVVDLVNAQRPDVVVIAGDLVDGTAARYRQEIAPLADLEAPLGVYVTTGNHEMYRDTANWVDEFRRLGLTVLANEHTTLERDGASIALAGVHDYSGTGPFTPDPDAALTGVDAAGFTLYAAHQPRQAFSVEGRGVDLQMSGHTHGGQLWPIRYLVPVQQPMVDGEATIAGTRVITSRGAGAWGPAVRVLAPPEVPVITLRRS

Crispr_ID: NZ_CP053707_10

• CRISPR_ID: NZ_CP053707_10
• CRISPR_location: 2563998-2564089
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP053707_10

Consensus_repeat	Method
CGAGGTGAAACGCGACCGCGAGAGGGTCC	CRISPRCasFinder

spacers of NZ_CP053707_10

>10.1|2564027|34|NZ_CP053707|CRISPRCasFinder
CTCTTCACCTCGAACCACCCCGTGGGTGGCGGGA

CRISPR arrays and Neighbor proteins around NZ_CP053707_10

CRISPR arrays

The CRISPR arrays of NZ_CP053707_10

>merge|NZ_CP053707|10|2563998-2564089|CRISPRCasFinder
CGAGGTGAAACGCGACCGCGAGAGGGTCCCTCTTCACCTCGAACCACCCCGTGGGTGGCGGGACGAGGTGAAACCCGACCGCGAGAGGGTCC

>NZ_CP053707|10|8|2563998-2564089|CRISPRCasFinder
CGAGGTGAAACGCGACCGCGAGAGGGTCC	CTCTTCACCTCGAACCACCCCGTGGGTGGCGGGA
CGAGGTGAAACCCGACCGCGAGAGGGTCC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053707.1|WP_173028602.1|2568333_2569083_+|DUF3710-domain-containing-protein	unknown	unknown	gnl|CDD|378867
NZ_CP053707.1|WP_173030142.1|2550844_2551855_-|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl|CDD|224525
NZ_CP053707.1|WP_173028599.1|2566488_2567355_+|inositol-monophosphatase	unknown	unknown	gnl|CDD|238817
NZ_CP053707.1|WP_173028592.1|2558035_2558641_-|nitroreductase-family-protein	unknown	unknown	gnl|CDD|380311
NZ_CP053707.1|WP_173028600.1|2567513_2567813_+|DUF4193-domain-containing-protein	unknown	unknown	gnl|CDD|379391
NZ_CP053707.1|WP_173028591.1|2555495_2557940_-|DNA-topoisomerase-IV-subunit-A	unknown	unknown	gnl|CDD|235503
NZ_CP053707.1|WP_173028603.1|2569438_2570155_+|DUF3159-domain-containing-protein	unknown	unknown	gnl|CDD|371490
NZ_CP053707.1|WP_173028604.1|2570179_2570872_-|TrkA-family-potassium-uptake-protein	unknown	unknown	gnl|CDD|223643
NZ_CP053707.1|WP_173028605.1|2570889_2571552_-|TrkA-family-potassium-uptake-protein	unknown	unknown	gnl|CDD|223643
NZ_CP053707.1|WP_173028589.1|2552840_2553860_-|sugar-ABC-transporter-permease	unknown	unknown	gnl|CDD|224096
NZ_CP053707.1|WP_030528994.1|2569082_2569442_+|OB-fold-nucleic-acid-binding-domain-containing-protein	unknown	unknown	gnl|CDD|239934
NZ_CP053707.1|WP_173028593.1|2558695_2561359_+|GNAT-family-N-acetyltransferase	unknown	unknown	gnl|CDD|131764
NZ_CP053707.1|WP_173028601.1|2567827_2568298_+|dUTP-diphosphatase	unknown	unknown	gnl|CDD|234802
NZ_CP053707.1|WP_173028594.1|2561408_2561999_+|phosphodiesterase	unknown	unknown	unknown
NZ_CP053707.1|WP_173028596.1|2563147_2563825_+|thymidine-kinase	unknown	unknown	gnl|CDD|235272
NZ_CP053707.1|WP_173028598.1|2565382_2566489_+|ferrochelatase	unknown	unknown	gnl|CDD|234585
NZ_CP053707.1|WP_173028597.1|2564134_2565274_-|DUF3071-domain-containing-protein	unknown	unknown	gnl|CDD|378619
NZ_CP053707.1|WP_173028588.1|2551886_2552837_-|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl|CDD|223472
NZ_CP053707.1|WP_173028595.1|2562002_2563136_+|alkaline-phosphatase-family-protein	unknown	unknown	gnl|CDD|366747
NZ_CP053707.1|WP_173028590.1|2553950_2555324_-|carbohydrate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl|CDD|224567

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP053707.1|WP_173028602.1|2568333_2569083_+|DUF3710-domain-containing-protein	gnl|CDD|378867	pfam12502, DUF3710, Protein of unknown function (DUF3710). This family of proteins is found in bacteria. Proteins in this family are typically between 237 and 284 amino acids in length. There are two conserved sequence motifs: DLG and DGPRW.	9.2211e-71
NZ_CP053707.1|WP_173030142.1|2550844_2551855_-|LacI-family-DNA-binding-transcriptional-regulator	gnl|CDD|224525	COG1609, PurR, Transcriptional regulators [Transcription].	2.46758e-101
NZ_CP053707.1|WP_173028599.1|2566488_2567355_+|inositol-monophosphatase	gnl|CDD|238817	cd01639, IMPase, IMPase, inositol monophosphatase and related domains. A family of Mg++ dependent phosphatases, inhibited by lithium, many of which may act on inositol monophosphate substrate. They dephosphorylate inositol phosphate to generate inositol, which may be recycled into inositol lipids; in eukaryotes IMPase plays a vital role in intracellular signaling. IMPase is one of the proposed targets of Li+ therapy in manic-depressive illness. This family contains some bacterial members of the inositol monophosphatase family classified as SuhB-like. E. coli SuhB has been suggested to participate in posstranscriptional control of gene expression, and its inositol monophosphatase activity doesn't appear to be sufficient for its cellular function. It has been proposed, that SuhB plays a role in the biosynthesis of phosphatidylinositol in mycobacteria.	1.543e-83
NZ_CP053707.1|WP_173028592.1|2558035_2558641_-|nitroreductase-family-protein	gnl|CDD|380311	cd02062, Nitro_FMN_reductase, nitroreductase family protein. Proteins of this family catalyze the reduction of flavin or nitrocompounds using NAD(P)H as electron donor in a obligatory two-electron transfer, utilizing FMN or FAD as cofactor. They are often found to be homodimers. Enzymes of this family are described as NAD(P)H:FMN oxidoreductases, oxygen-insensitive nitroreductase, flavin reductase P, dihydropteridine reductase, NADH oxidase or NADH dehydrogenase.	5.84729e-24
NZ_CP053707.1|WP_173028600.1|2567513_2567813_+|DUF4193-domain-containing-protein	gnl|CDD|379391	pfam13834, DUF4193, Domain of unknown function (DUF4193). This domain of unknown function contains four conserved cysteines and a conserved histidine, including a CXXXXH motif.	1.01416e-55
NZ_CP053707.1|WP_173028598.1|2565382_2566489_+|ferrochelatase	gnl|CDD|234585	PRK00035, hemH, ferrochelatase; Reviewed.	3.49022e-102
NZ_CP053707.1|WP_173028603.1|2569438_2570155_+|DUF3159-domain-containing-protein	gnl|CDD|371490	pfam11361, DUF3159, Protein of unknown function (DUF3159). Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed. Currently this family of proteins has no known function.	1.50445e-50
NZ_CP053707.1|WP_173028604.1|2570179_2570872_-|TrkA-family-potassium-uptake-protein	gnl|CDD|223643	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism].	2.11422e-52
NZ_CP053707.1|WP_173028605.1|2570889_2571552_-|TrkA-family-potassium-uptake-protein	gnl|CDD|223643	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism].	5.20345e-38
NZ_CP053707.1|WP_173028589.1|2552840_2553860_-|sugar-ABC-transporter-permease	gnl|CDD|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	1.30874e-60
NZ_CP053707.1|WP_030528994.1|2569082_2569442_+|OB-fold-nucleic-acid-binding-domain-containing-protein	gnl|CDD|239934	cd04488, RecG_wedge_OBF, RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG. RecG is a branched-DNA-specific helicase, which catalyzes the interconversion of a DNA replication fork to a four-stranded (Holliday) junction in vivo and in vitro. This interconversion provides a route to repair stalled forks. The RecG monomer contains three domains. The N-terminal domain is named for its wedge structure, and may provide the specificity of RecG for binding branched-DNA structures. During the reversal of fork to Holliday junction, the wedge domain is fixed at the junction of the fork where the leading and lagging strand duplex arms meet, and is thought to promote the unwinding of the nascent leading and lagging strands. In order to form the Holliday junction, these nascent strands would be annealed, and the parental strands reannealed. The wedge domain may also be a processivity factor of RecG on these branched chain substrates.	3.92042e-11
NZ_CP053707.1|WP_173028593.1|2558695_2561359_+|GNAT-family-N-acetyltransferase	gnl|CDD|131764	TIGR02717, Uncharacterized_protein_MJ0590, acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.	9.30902e-117
NZ_CP053707.1|WP_173028601.1|2567827_2568298_+|dUTP-diphosphatase	gnl|CDD|234802	PRK00601, dut, dUTP diphosphatase.	6.67514e-65
NZ_CP053707.1|WP_173028597.1|2564134_2565274_-|DUF3071-domain-containing-protein	gnl|CDD|378619	pfam11268, DUF3071, Protein of unknown function (DUF3071). Some members in this family of proteins are annotated as DNA-binding proteins however this cannot be confirmed. Currently no function is known.	1.12791e-56
NZ_CP053707.1|WP_173028591.1|2555495_2557940_-|DNA-topoisomerase-IV-subunit-A	gnl|CDD|235503	PRK05561, PRK05561, DNA topoisomerase 4 subunit A.	0
NZ_CP053707.1|WP_173028596.1|2563147_2563825_+|thymidine-kinase	gnl|CDD|235272	PRK04296, PRK04296, thymidine kinase; Provisional.	2.43053e-83
NZ_CP053707.1|WP_173028588.1|2551886_2552837_-|carbohydrate-ABC-transporter-permease	gnl|CDD|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	1.16077e-74
NZ_CP053707.1|WP_173028595.1|2562002_2563136_+|alkaline-phosphatase-family-protein	gnl|CDD|366747	pfam01663, Phosphodiest, Type I phosphodiesterase / nucleotide pyrophosphatase. This family consists of phosphodiesterases, including human plasma-cell membrane glycoprotein PC-1 / alkaline phosphodiesterase i / nucleotide pyrophosphatase (nppase). These enzymes catalyze the cleavage of phosphodiester and phosphosulfate bonds in NAD, deoxynucleotides and nucleotide sugars. Also in this family is ATX an autotaxin, tumor cell motility-stimulating protein which exhibits type I phosphodiesterases activity. The alignment encompasses the active site. Also present with in this family is 60-kDa Ca2+-ATPase form F. odoratum.	4.51801e-34
NZ_CP053707.1|WP_173028590.1|2553950_2555324_-|carbohydrate-ABC-transporter-substrate-binding-protein	gnl|CDD|224567	COG1653, UgpB, ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism].	1.00112e-22

Protein sequences

>NZ_CP053707.1|WP_173028596.1|2563147_2563825_+|thymidine-kinase
MADLVFFSGTMDCGKSTLALQIDHNQRARDRQGIIFTKLDRAGESVLSSRLGLETSAVEVGDDLDFWDVVVERLTVGARVDYVICDEAQFYTPRQVEQLARLVDELGISVTAFGITADFRTELFPGSRRFIELADRVEVLQVEALCWCGRRATHNARIVDGVMVVEGAQVVVGDTATASEGLVEYEVLCRRHHMRRMNSHAARQASPTPDVLPFDLDACPVPPPA
>NZ_CP053707.1|WP_173028595.1|2562002_2563136_+|alkaline-phosphatase-family-protein
MPLPAAPDYASGSLADVLPSICASLGVPGAVGALGLAPARRAVVVLVDGLGAAQLSRRLGHAPWLRSLAGSTRRVPAGFPSTTATSMGTFGTGSPSGAHGMLGYEVMVPGEDRVFNELSWEDGPVPERWQSLPTWFERAQADGVAVTRIGPGFFDGSGLTRAALRGGRFRAADALAARVDVALQAVRSSPRSLVYLYWGEVDKLGHVHGPESFEWTEELEAVDRELARLAAGLPGDASLTVTADHGMVLCPQENRLDVAHEPAMLDGVHLLGGEPRATHVYCRPGAADDVAAAWSAWLGGRASVVHRADAVAAGWFGPVDPAHLPRIGDLVVVAHDDFCLVDSSRMRPQLLALAGMHGALTAEELDVPVVHAPARVA
>NZ_CP053707.1|WP_173028594.1|2561408_2561999_+|phosphodiesterase
MTSAHHAPALPADLISSIDRAGYFPALVADVVSAALGTERIDNHLVHLETTFDRDVVRRHITVLVLTPTRLLIAHADDHADEPPAPQEVATATTESIPLSAVKGVMLTHVVEKPESYVPGTLGREVTLTLGWGTVARVDMVPATCSDPDCDADHGYEGTITGDDIALRISAAADGDDKLQRALAFARELSGAIGQR
>NZ_CP053707.1|WP_173028593.1|2558695_2561359_+|GNAT-family-N-acetyltransferase
MAEETLPPGYPIAWEADVVLRDGTVASVRPIRPADGDALRRFHNAQSDESIYLRFFAPLRRLSDADVHRFTHVDYTDRVALVVTMREEIIGVGRFDRLDARSAEVAFNISDHYQGKGIGSVLLEHLAAIARDVGIARFTAEVLPQNRKMLAVFSDAGYEVARRVEDGVVEVGFDIEPTDRSRAVEMSREHRAEAQSLRSVLTPDTIAVVGASRRTDTFGGQLLDRLLESGFAGRVVPVNPSSKKVRRLTCYPTVRDVPGTVDLAIIAVPAEAVLDVVDDCAEVGVKALLVVSAGFAEDGPEGAARQAELVRRARGAGMRVIGPNSFGIINNDPGVRLNATLAPTLPPPGRLGLFAQSGALGIAVLASAARRNLGISTFGSAGNRADVSGNDFMQYWIDDASTDAVGLYLESMGNPRKFSRIARKLARIKPVIVVKSGVSRFGVPPGHEVRETKARPEVFRAMLNQAGVIRVENVHQLFDVGQLVVHQPLPAGDRVAVVGNSAALGALTGDACASWGLTVAHGPVSLPSEASAEDFHAALRRAFEDPGVDSVVSCFIPPLATGDADVAAAVRAAAADSDKPCVATFLGLRGVDDRGSVTGTGGESRAIPVYAMPEDAVRALAAATRYGQWRAREHGTPVAPVGINRRVAEDVVETVLSVHPNGRRLTHDEATALLSAYGVDLWGQQEVASVEDAVAAAERVGYPVVLKSVAPMVRHQGGSGGVRVDLDGERSLRAAWASLSERLAPLQADRFVVQRMASQGVACVVSSDEDPLFGPVIGFSVAGLPTELLGDVAYRIPPLTDVTVSELISSVKAAPVLHGYRGQTPVHRAALADLIARISVLADDMPEVASLVLNPVNAHPGGVEVLGAEISVAPAPRRIDPGRRSLT
>NZ_CP053707.1|WP_173028592.1|2558035_2558641_-|nitroreductase-family-protein
MELDEAVRRRRMVRRFDPDAPVPEEVVRDLVALAVRAPSAGFSQGWDFVALLDAADRERYWAAASGPGAPDAWLRGVSAAPVLLLCLSDPDAYLDRYAEPDKGWTDRDPARWPVPYWDTDTAMAAMLVLLGAVDRGLGALFFGVPAARHEAVLEAFDVPAGRRLVGVLALGHEAERVSGSARTRRRRGVDEVLHRGRFGVS
>NZ_CP053707.1|WP_173028591.1|2555495_2557940_-|DNA-topoisomerase-IV-subunit-A
MAKRTTTPPPPEDALGKVVDIDVEEEMRSAFLEYSYSVIYSRALPDARDGLKPVQRRILYGMSELGLRPDRPHVKSSRVVGEVMGKYHPHGDQAIYDALVRLAQPWTMRLPLVDGHGNFGSLDDGPAASRYTEARMAPAALLMVTSLDEETVDFVPNYDDSLLQPGVLPAAYPNLLVNGTSGIAVGMATNMAPHNLVEVVGAARHLLDHPDCSLDDLMKFVPGPDLPGGGRIVGLDGIRDAYLTGRGKFLTRASARVEKLTPRRMGIVVTELPYLVGPEKVIERVKVLVQAKKLQGISDVKDLTDRKNGLRLVFEVKNGFNPEAVLEQLYKHTPMEDSFGINNVALVDGQPQTLGLKELLRVYVQFRTDVVRRRTEYRLGKRRDRLHLVEGLLVAILDIDEVIQLIRASDDASAARARLIDVFDLSEVQAEYILELQLRRLTKFSRIELEAERDELKRLIEELEAILGDEKLLRRTVSGELADVAKAHGTPRRTVLLESAGTPVTQTTPLEVSDDPCWVLLSSTGLLARTSTAEPIPADGPRAKHDAIIGAVRTTARGEFALVTSRGRMVRMSALELPALPPLGGSPSLSGGAPLAVYVDLPRGEEPLTIVSLDPSGPGLALGTAQGVVKRVVPEYPKSPDWEVVSLKDGDSVVGAVELRDGAEDLVFVSSDAQLLRFPAASVRPQGRAAGGMAGIRLSPKASAVFFGAIDPAAENVVVTSSGSSDALPGTQGGSMKVAPYTEYPAKGRATGGVRAHRFLRGEDALVLAWVGALPARASGAGGVALELPAATGKRDGSGTPHAAVVAGIGAPVR
>NZ_CP053707.1|WP_173028590.1|2553950_2555324_-|carbohydrate-ABC-transporter-substrate-binding-protein
MALISTRRALAFSGVLAVALSATACGSGDSGGSGDTASSGGTSSIDCAPYTAFGDLKGKTVSVYTSITAPEDGPHIASYKPFEECTGVTIKYEGSKEFEAQLPVRVKGGNAPDIAYLPQPGLLQTMVATGAVKPAPAEVTANVDKNMPDFKEYGTVDGTFYAAALGANVKSFVWYSPSAFADKGYQIPTTWDELLALTDKIAKDNPDAKPWCAGIESGDATGWPATDWVEDVMLRTAGAETYDKWVKHEIPFNDPSVATALAEVGKILKNPAYVNGGFGDVKTIASTSFQDAGQPILDGSCYMHRQASFYAANWPEGTKVAEDGDVWAFYLPSKTAEDRPVLGGGEFVAAFADRPEVKAFQTYLSSVEWANERAKTCGSGGCVTANKNADASLLKNPVDKLSAEQLTDANATFRFDGSDLMPGAVGAGTFWKGMTDWITGKDDASTLDYIEQSWPKS
>NZ_CP053707.1|WP_173028589.1|2552840_2553860_-|sugar-ABC-transporter-permease
MVSSVLQALPVGILPEPLLRAESTGGKFLLMAFAVLLFAAIFGLVLFLASLFKGREGEKVQGFLFALPAIFLLAVGLLYPAILTIIQSLRGRSGEAGFTLDNYVQMFTQPELLTVLRNTALWVVLVPFLATAIGLLYAILIDRARGEAFAKALIFLPMAISMVGAGIIWKFVYQYKQTERPQIGLLNGVLKALGFETQQFLLDAPVNTLMLIIVMVWIQAGFAMTVLSAAIKAIPDDIIEAARLDGVSGFRMFRFITLPSIRSALVVVLTTIGIGTLKVFDIVRTMTAGQFDTSVVANEFYNQSFRYNAPGLGAALAVLLFILVVPIVTYNIVQMRKEA
>NZ_CP053707.1|WP_173028588.1|2551886_2552837_-|carbohydrate-ABC-transporter-permease
MSTLQPAATPESVTTESGVTVTGKRRKKSAAGNAAKAITSPWASLVAVVIAVLWTLPTIGLFVTSFRRQIDIQRTGWWTAFSNPGDFTLENYRQALAPSSTSSFSQYFINTIVITVPAVLLPIFLASLAAYAFAWMPFPGRDFLFVAVFALQIVPLQVALIPLLDIYVNKLGFGASYWSVWLSHTIFALPLATFLIHNFMKELPGELMEAARVDGAGHVTIFFKILLPLLTPALAAFGIFQFLWVWNDLLVSLVFLGGTPDVAPVTVRVAELSGSRGSAWYILSAGAFISMVVPVAVFLALQRFFVRGLLAGGLKG
>NZ_CP053707.1|WP_173030142.1|2550844_2551855_-|LacI-family-DNA-binding-transcriptional-regulator
MSTITDVARAAGVSVATVSRALRGLDRVSPETRQRVLEVAEELHYVASPTATSLASGRTRVVAVVAPFLTRWFFATLVSAIEKELRSHGHHAILFDLEDDSYDQRLPLTQNMLWKRVDGVITLNVPMEPEEVELVDRLGLPLVAIGSAVPGRACVRIDDGATMRTAVEHLISLGHRRIGYIGDVPRNVAHVQTPQDRLTAFRTTMAESGLEVVEEWILGSDWTAEAAARDSAVLLSHPQRPTAVVAASDEMAIGVRESARKGGLRVPEDLSVIGIDDYVLSGVLGLTTVRQDVAAQGREAAVLLLRALTGDAPVLEQVVMPTELVVRESTGPVPLS
>NZ_CP053707.1|WP_173028597.1|2564134_2565274_-|DUF3071-domain-containing-protein
MQDLRLIGVHEDGQHLLLADAEGGRFRLPLDEPLRAAARRDRPRLGQLQIEMSGGMRPREVQALIRRGLSAQEVAERSGWPVEKVHRFEGPILAEREHVARVARRCAVGTRGPAPVTLEDRVAERLRDRDVDRDAVEWDSARDDEGVWQVSMVFGAGGRQRTATWLYEPLGGSVTPTNDEARWLSEDTVSGLVPTPHRAPTPGDLDVYDVDADGGIERSGGSSAPRAREAHEPIDLMAAMREHSARGRRSKRRTSPTATPGEDDARPDALPIEELALDPVLAPPPPAARARKPVQEHLEEPTASSEVVGGFPEDDAREEAEAAEAERAVREAPVTPPAPPAAPPERPAASARPSSGRKGRPSVPSWDDIVFGTKGSGPS
>NZ_CP053707.1|WP_173028598.1|2565382_2566489_+|ferrochelatase
MTAATGDLAPYDVVLLGSFGGPESEDEVMPFLRRVTAGRNIPDERLVAVGEHYYARGGRSPINDLNRDLLARLRAELERRGIEVPVVWGNRNSEPFFADALHEALDGGATRVVSLFTSAYSCYSSCRQYREDLASAMEQVGPAGDGLHVDKVRQYVHHPRLGAAWARALATALRGLDDPAAARILYVTHSIPLAMDDTSGPGDGEGNLYTDQHLRLGRRLDEVVGAELGVELRGELVFCSRSGPPSQPWLEPDVNDRIEELAAESKAPVVCVPIGFVSDHMEVVHDLDTEAAETAERVGVPFVRVPTPHADDEFVEGLVDLLLERAAEARGEVVVPESWLPGDVRPSTCAPGCCPNLRVAKPALCGSD
>NZ_CP053707.1|WP_173028599.1|2566488_2567355_+|inositol-monophosphatase
MLPDVPAGLDLAHLEDVACRVAREAGALVRDERPADLGFSTKSTGTDVVTEMDQRSQELLLERLGALRPDDAVLGEEEGGREGTSGVTWVVDPIDGTTNYLYGVPAYAVSVAAVVGDPTRPGAWRGVAGAVLDPERDELHHAHLGGGAWLTSGAGTRRLRVRATDDLALALVGTGFGYDAAVRARQATVLAEVLPRVRDVRRHGSAALDLCAVATGRLDAYYESGLNAWDRAAGELVAREAGAVVGGSTDEVASRDLTWAAAPGLAEALAALVRPLTARHVGSLGQPA
>NZ_CP053707.1|WP_173028600.1|2567513_2567813_+|DUF4193-domain-containing-protein
MATDYDAPRKTEEDVSEDSIEELKNRRVDSRSSSVDIDETEQAEGFELPGADLSGEELSVRVLPRQADEFTCSQCFLVHHRSQLASDAGGALVCRDCAA
>NZ_CP053707.1|WP_173028601.1|2567827_2568298_+|dUTP-diphosphatase
MGGPTRVPVAVRRLHDDAVLPRYGREGDAGADLSSVAEVTLAPGERALVPTGIALALPPGTVGLVHPRSGLAARHGVSIVNAPGTVDSGYRGEVLVNLVNLDPTESFTVRVGDRIAQLVVQEYLHADFSAADSLPGSARGETGHGSTGGFGPTDTA
>NZ_CP053707.1|WP_173028602.1|2568333_2569083_+|DUF3710-domain-containing-protein
MSIFRRSKRTETEPASAPEAEDATTVEDDATEAPEAESADRTGGPFDVSEVDGRDGRLDLGALWVRGVAGMELRLEVEQETQVVNAATAVVGDSALQMQAFAAPRTEGLWTDIRREIAMSVERQGGTVEEVVSDLGTRLRTRLPSAGPDGRTVFAPATFVGVDGPRWFLRGVLSGRAAIDDEAAEPLLEVLRQVVVVRGTDPMAPRELLPLRLPTDGPDEQAPVEEADDADGTTTLDPFERGPEITEVR
>NZ_CP053707.1|WP_030528994.1|2569082_2569442_+|OB-fold-nucleic-acid-binding-domain-containing-protein
MTLRERLRDLSRTPLEQDADELQQQSASEGGDDLSALAPRFSACVCGSVRAVTLPPRRSVPALVAEVWDGKGAVNLVWVGRRSIGGIEPGTFVRARGRVTTVRGVQTIFNPAYEILPKQ
>NZ_CP053707.1|WP_173028603.1|2569438_2570155_+|DUF3159-domain-containing-protein
MSAATPAPAAETVEALIRHRLSVALGGWRGSVETALPTVVFVVAWSVTDHDVKVAAITAIGVALVLAVLRLVQRSSLQHVLGAVLATGIAAFFALRSGEAQDAFLPGILTSAGFLVATVVSILTRWPAVGFIVGAGDPRAAEDPFGWRRDAGMVRVCVRLTWVLVALYVIRLAVMVPLYLGEQVALLGVAKVVLGWPLWVGGIAVMGWLLVSGHTPLEPGRGPAAGDGADEPLAGRDA
>NZ_CP053707.1|WP_173028604.1|2570179_2570872_-|TrkA-family-potassium-uptake-protein
MRVVIAGAGSVGRSIARELIRNGHSVLLVDREADGERVSKVPDASWLQADACEIDTLSEAGLAECDVVVAATGDDKVNLVLSLLAKTEFGVPRTVARVNNPKNEWMFDEAWGVDVAVSTPRLMTALVEEAVSVGDLVRIFEFQQGRAMMVEMTLPLGSPYAGARVGDVPFPADTVLTGIIRDGHPIAPSRDDALEPLDELLFVTTPEAESDLESLLSPGRRQKREEDEGA
>NZ_CP053707.1|WP_173028605.1|2570889_2571552_-|TrkA-family-potassium-uptake-protein
MHFVIMGCGRVGASLARALERAGHEVAVVDQEEDAFRRLGTSFEGRTVTGVGFDRDTLRAAGIEDAYAFAAVSSGDNSNILAARVAREKFGVENVVARIYDPGRAEIYQRLGIPTVATVKWTSDQMLRRLLPQGHVPEFTDPSGHVVIAEIPVTAAWIGRRFSELETATEGRLAYVTRLGDGFIPGTDTVYQEGDLVHLALLREHLATAERVLDAPPPAH

Crispr_ID: NZ_CP053707_11

• CRISPR_ID: NZ_CP053707_11
• CRISPR_location: 2890966-2891064
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP053707_11

Consensus_repeat	Method
CATCAATCGACACTTTCGACGATTGATGCACG	CRISPRCasFinder

spacers of NZ_CP053707_11

>11.1|2890998|35|NZ_CP053707|CRISPRCasFinder
CTCCGGGGCGTCCGGCAGATGGTGGTCGGGGCGGT

CRISPR arrays and Neighbor proteins around NZ_CP053707_11

CRISPR arrays

The CRISPR arrays of NZ_CP053707_11

>merge|NZ_CP053707|11|2890966-2891064|CRISPRCasFinder
CATCAATCGACACTTTCGACGATTGATGCACGCTCCGGGGCGTCCGGCAGATGGTGGTCGGGGCGGTCATCAATCGACACTTTCGACGATTGATGCACG

>NZ_CP053707|11|9|2890966-2891064|CRISPRCasFinder
CATCAATCGACACTTTCGACGATTGATGCACG	CTCCGGGGCGTCCGGCAGATGGTGGTCGGGGCGGT
CATCAATCGACACTTTCGACGATTGATGCACG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053707.1|WP_173028887.1|2903726_2904911_-|dephospho-CoA-kinase	unknown	unknown	gnl|CDD|179560
NZ_CP053707.1|WP_173028874.1|2883073_2883769_+|maleylpyruvate-isomerase-family-mycothiol-dependent-enzyme	unknown	unknown	gnl|CDD|236578
NZ_CP053707.1|WP_173028882.1|2894433_2895744_+|ROK-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224851
NZ_CP053707.1|WP_173028884.1|2898182_2899106_+|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl|CDD|223472
NZ_CP053707.1|WP_173028885.1|2899121_2902187_+|alpha-mannosidase	unknown	unknown	gnl|CDD|223460
NZ_CP053707.1|WP_173028880.1|2891151_2892177_+|aldo/keto-reductase	unknown	unknown	gnl|CDD|381307
NZ_CP053707.1|WP_173028876.1|2884450_2885326_+|EamA-family-transporter	unknown	unknown	gnl|CDD|227339
NZ_CP053707.1|WP_173030176.1|2897367_2898186_+|sugar-ABC-transporter-permease	unknown	unknown	gnl|CDD|224096
NZ_CP053707.1|WP_173030175.1|2885344_2886349_-|TerC-family-protein	unknown	unknown	gnl|CDD|274743
NZ_CP053707.1|WP_173028886.1|2902209_2903637_-|APC-family-permease	unknown	unknown	gnl|CDD|129987
NZ_CP053707.1|WP_173028883.1|2895884_2897243_+|extracellular-solute-binding-protein	unknown	unknown	gnl|CDD|270453
NZ_CP053707.1|WP_173028878.1|2889205_2890654_+|hypothetical-protein	unknown	unknown	gnl|CDD|238038
NZ_CP053707.1|WP_173028877.1|2886430_2889088_+|phosphoenolpyruvate-carboxylase	unknown	unknown	gnl|CDD|366019
NZ_CP053707.1|WP_173028881.1|2892228_2894343_-|excinuclease-ABC-subunit-UvrB	unknown	unknown	gnl|CDD|235395
NZ_CP053707.1|WP_173030174.1|2878144_2881216_-|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl|CDD|234734
NZ_CP053707.1|WP_173028872.1|2877223_2878123_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP053707.1|WP_173028888.1|2904981_2906160_+|acyltransferase	unknown	unknown	gnl|CDD|224748
NZ_CP053707.1|WP_173028873.1|2881269_2883063_+|glycoside-hydrolase-family-15-protein	unknown	unknown	gnl|CDD|225922
NZ_CP053707.1|WP_173028875.1|2883771_2884434_+|MBL-fold-metallo-hydrolase	unknown	unknown	gnl|CDD|293792
NZ_CP053707.1|WP_173028879.1|2890663_2890852_+|hypothetical-protein	unknown	unknown	unknown

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP053707.1|WP_173028887.1|2903726_2904911_-|dephospho-CoA-kinase	gnl|CDD|179560	PRK03333, coaE, dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional.	1.36074e-162
NZ_CP053707.1|WP_173028874.1|2883073_2883769_+|maleylpyruvate-isomerase-family-mycothiol-dependent-enzyme	gnl|CDD|236578	PRK09583, PRK09583, mycothiol-dependent maleylpyruvate isomerase; Reviewed.	3.80196e-43
NZ_CP053707.1|WP_173028884.1|2898182_2899106_+|carbohydrate-ABC-transporter-permease	gnl|CDD|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	3.26348e-72
NZ_CP053707.1|WP_173028885.1|2899121_2902187_+|alpha-mannosidase	gnl|CDD|223460	COG0383, AMS1, Alpha-mannosidase [Carbohydrate transport and metabolism].	2.10975e-162
NZ_CP053707.1|WP_173028880.1|2891151_2892177_+|aldo/keto-reductase	gnl|CDD|381307	cd19081, AKR_AKR9C1, AKR9C family of aldo-keto reductase (AKR). Haloferax volcanii aldo-keto reductase is a founding member of aldo-keto reductase family 9 member C1 (AKR9C1).	3.82775e-138
NZ_CP053707.1|WP_173028876.1|2884450_2885326_+|EamA-family-transporter	gnl|CDD|227339	COG5006, rhtA, Threonine/homoserine efflux transporter [Amino acid transport and metabolism].	5.13144e-58
NZ_CP053707.1|WP_173030175.1|2885344_2886349_-|TerC-family-protein	gnl|CDD|274743	TIGR03718, R_switched_Alx, integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.	2.27893e-135
NZ_CP053707.1|WP_173028886.1|2902209_2903637_-|APC-family-permease	gnl|CDD|129987	TIGR00909, putative_amino_acid_transporter, amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	2.25282e-42
NZ_CP053707.1|WP_173028883.1|2895884_2897243_+|extracellular-solute-binding-protein	gnl|CDD|270453	cd14750, PBP2_TMBP, The periplasmic-binding component of ABC transport systems specific for trehalose/maltose; possesses type 2 periplasmic binding fold. This group represents the periplasmic trehalose/maltose-binding component of an ABC transport system and related proteins from archaea and bacteria. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 proteins are comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.73999e-84
NZ_CP053707.1|WP_173028878.1|2889205_2890654_+|hypothetical-protein	gnl|CDD|238038	cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and anaredoxins.	2.28666e-10
NZ_CP053707.1|WP_173028877.1|2886430_2889088_+|phosphoenolpyruvate-carboxylase	gnl|CDD|366019	pfam00311, PEPcase, Phosphoenolpyruvate carboxylase.	0
NZ_CP053707.1|WP_173028881.1|2892228_2894343_-|excinuclease-ABC-subunit-UvrB	gnl|CDD|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
NZ_CP053707.1|WP_173030174.1|2878144_2881216_-|excinuclease-ABC-subunit-UvrA	gnl|CDD|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NZ_CP053707.1|WP_173030176.1|2897367_2898186_+|sugar-ABC-transporter-permease	gnl|CDD|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	3.1387e-63
NZ_CP053707.1|WP_173028888.1|2904981_2906160_+|acyltransferase	gnl|CDD|224748	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism].	1.06732e-33
NZ_CP053707.1|WP_173028873.1|2881269_2883063_+|glycoside-hydrolase-family-15-protein	gnl|CDD|225922	COG3387, SGA1, Glucoamylase and related glycosyl hydrolases [Carbohydrate transport and metabolism].	1.90881e-120
NZ_CP053707.1|WP_173028875.1|2883771_2884434_+|MBL-fold-metallo-hydrolase	gnl|CDD|293792	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily. Activities carried out by superfamily members include class B beta-lactamases which can catalyze the hydrolysis of a wide range of beta-lactam antibiotics, hydroxyacylglutathione hydrolases (also called glyoxalase II) which hydrolyze S-d-lactoylglutathione to d-lactate in the second step of the glycoxlase system, AHL lactonases which catalyze the hydrolysis and opening of the homoserine lactone rings of acyl homoserine lactones (AHLs), persulfide dioxygenase which catalyze the oxidation of glutathione persulfide to glutathione and persulfite in the mitochondria, flavodiiron proteins which catalyze the reduction of oxygen and/or nitric oxide to water or nitrous oxide respectively, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J which has both 5'-3' exoribonucleolytic and endonucleolytic activity and ribonuclease Z which catalyzes the endonucleolytic removal of the 3' extension of the majority of tRNA precursors, cyclic nucleotide phosphodiesterases which decompose cyclic adenosine and guanosine 3', 5'-monophosphate (cAMP and cGMP) respectively, insecticide hydrolases, and proteins required for natural transformation competence. The diversity of biological roles is reflected in variations in the active site metallo-chemistry, for example classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, human persulfide dioxygenase ETHE1 is a mono-iron binding member of the superfamily; Arabidopsis thaliana hydroxyacylglutathione hydrolases incorporates iron, manganese, and zinc in its dinuclear metal binding site, and flavodiiron proteins contains a diiron site.	7.59324e-42
NZ_CP053707.1|WP_173028882.1|2894433_2895744_+|ROK-family-transcriptional-regulator	gnl|CDD|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	1.59956e-51

Protein sequences

>NZ_CP053707.1|WP_173028879.1|2890663_2890852_+|hypothetical-protein
MGMTFSAVTAAVGLCAVLLGFLTGFGGMSWEGALLVSGVLLLAVAGAVRWYSGLSTEIPPAP
>NZ_CP053707.1|WP_173028878.1|2889205_2890654_+|hypothetical-protein
MDTETLSRRVAALRQECARLGRELVEGGHRLSADEAFALAGELQGLVNAAEGATVVAGAWGARVETTVRSGSWERVHPVGFVDAMAATRMSLATGLTEGLAGRKAALGAAVGERFPRVRDLLVEGAVAVVAVQKVLDACAGLDVEACLRVDAELAPRLARMDPARVAGEARRVATRVAAEQVAAHVALRRRGRCVEVRPGEDGLTDWFASLPTATSSAMWAAVEALAGDYRAFDDALSVPQSRADALTDLVLRNVTVSAQVTLGVPVVTDRPAPDATPGTRFRVDWDDDETLVDATTGEIVRYGDLDATSREELSWLEELDGDLTVLQAEVTPGYAVSGTQLPGLGWVEPATLANLLRLLPVEVARAVLEADTGTLASLTTAAYRPPKAIAEFVKTRDGTGRMWGCTRPAAHCDLDHVRPWPSGDTSPTNLAALCRRHHRLKQQGPWRPTLAPDGTLTWHGPDGATRTTEPQQRLSGQSGSP
>NZ_CP053707.1|WP_173028877.1|2886430_2889088_+|phosphoenolpyruvate-carboxylase
MASMLDDLSLLTSLHRQVVEESGRADLLELTDALERRCRGEEDGDPAALVAALDPETTARVARLLTVHLHLTNLAEERHRARSLRREDGEYGGGSDTGDIGPAVAAAGPDARARLERMRIHPVLTAHPTEARRRAVASALRRIAEHLDTHADPGSGPSERARARRRMLEDIDILQRTSTLRITRPTPADEVKTVLTVFRQSLIHAVPRFQRAVEAAFGGDERPSDTPLPPIVRFGSWVGGDRDGNPFVTAEVTRETVRAHADQALEILHDAVDRVARMITVDEESTPPTARLRDALANDAAAHPRLLAEVTKDSPNEPHRQKLLVVAARLAATRDERAGVAYGSPEEALADLALVQDSLVAAGDARTAHGELQDVVWMVQTFGFHLAELEVRQHSAVHRAALVEALGLLPDDARPADPEAAATDPALLDRLAVEGWPELVGAPGDRTREVLDTLRVMAWLQQRWGRRSCGRYVVSFSQSAADLVAVRALARLAVGTRPLALDVVPLFETGADLDAADHTLEEWVALPSTATWLEGVEKEVEVMLGYSDSAKDVGPAAATLALHRAQVGLVAWARRHGVELTLFHGRGGSLGRGGGPLHRAIAAQPTGSVDGRFKVTEQGEVIFARYADVRIAEQHLERVASAVLLTDAPDHVAARDEAAGRFDAVGSAVAQASRASFRSLVEQPGFADFFAMSSPLDLLADLRLGSRPSRRSGSESGRSLDDLRAIPWVFAWSMTRVNLPGWYGLGSGLAALGDLHEARQAYREWPVFAALVDVAEMSLAKTDDDLAAAFLALGGRPELATQVLDELALTRRMVLELLGQSEMLERKPHLYTAVGLRRPFVDMLSHLLLRGLGELRATGEGEGSEWHRPLLLTVNGLAAGLQNTG
>NZ_CP053707.1|WP_173030175.1|2885344_2886349_-|TerC-family-protein
MPAATSDLDLAPWVWWVTIGIAVAVLAFDIVVIARRPHRPSTKELVSALAVYVGAAILFGLGLWFTAGGQLAGEFFAGWLTEYSLSVDNLFIFILIMASFRVPEKYQQFALMVGIVIAIVLRGIFIAVGAAAIDRFSWVFYIFGAFLVYTAWKLASGGETDDDEYEQNRFMRLMSKRFPASEDYDGTKLFTRQNGARLATPLFFVIVALGTTDLLFALDSIPAIYGLTDEPYLVLVANLFALMGLRQLYFLIGGLLKKLIYLSYGLAVLLAFIGVKLILHALHENELGFINGGEPVPVPEIPISVSLGAIVVILGVTTVLSLWRTRRHPELVED
>NZ_CP053707.1|WP_173028876.1|2884450_2885326_+|EamA-family-transporter
MTTAADRVPAPLLVLAGVVSVQFGGALAQTLVPVIGAGGSVVMRLLFATALLLVVVRPRWRGHTRRAWATVTAFGVALGLMNYTFYQSLAHLPIGVAVTIEFIGPLTLAAVLSRRLVDALGVLAAAGGVVLISEALQVPFAELEWTGILLALAAGGFWAAYIVLSGRTGAAFPKLEGLALAMVVATVVTLPLGITSVPSWTGETLLKGLGIAVLSSVLPYSLELLALRRLRAQVFGILLSLEPAAAAVAGLIVLGQRLAPSQLVGMGLVVGASALVLGLGARKDPAEAQAA
>NZ_CP053707.1|WP_173028875.1|2883771_2884434_+|MBL-fold-metallo-hydrolase
MTYTGDVTPGGPSDVRELGPATLRKMSVSDMHNNVYLLTCTATGEQLMVDAADDADRCLALVAEGTGRLDHLVTTHQHWDHVRALEDVARATGARTYAGEDDADALPLAPDVPLRQGDTLRVGELVLDVVHLRGHTPGSVALAWRAPDGVTHLFTGDTLFPGGVGNTKNEGQDFDSLYADVTERLFGVYDDETWFYPGHGGDSTLGAERPHLDEWRERGW
>NZ_CP053707.1|WP_173028874.1|2883073_2883769_+|maleylpyruvate-isomerase-family-mycothiol-dependent-enzyme
MTGTPIDPGTYLADHTARLVATTRALPDAGGESLCAGWTRGHVATHVARNADGLVRLVRSAVDGTRETMYASRPERNADIDAGADRSPAELADDLEATAAAYAAEVVRLRPEHAGHALERTPGDVRGSAADIPMMRLREVTWHHVDLDAGFGFGDLEPEVQLAFLDEEVERLRTLDDAPDVTLRSDEGEEWTVGLGTASVTGTRAALLGWLARGLTDGVSADPLPRLPDGR
>NZ_CP053707.1|WP_173028873.1|2881269_2883063_+|glycoside-hydrolase-family-15-protein
MTTPIAEYALLGDTEGAALVSRHGAVDWLCLPRFDSPACFAAVLGTDDNGRWFLGPVEEATATRAYREHSFVLDTVHETATGRVRVTDLMPFGDGRADLVRVVEGLEGEVPMLHEWVVRTGYGKVLPWVSRTQDCDGATVIRAVAGPDMLVLRGDRLPEPTDHHHRDEFTVRAGERYEFAMTWVPSWCDVPGALDVPSRVEETVRRFDDWAARHTHEGPYREAVTRSLLVLRLLTDELRGGIVAAPTTSLPEDVGGERNWDYRYCWLRDASLTLEALLACGYVEETRLWRDWLVRAVAGDPADLQIMYAVDGSRELPERTLDHLPGYAGSRPVRVGNAAVDQRQSDVLGEVMISLDEARRLGVSESHESWAVQRALVDDLADHWDQSDNGLWEIRGEPQHFTHSRVMVWAAFDRAVRAVEEDGHEGDVERWRTLRDLVHAEVLEKGYDAERGTFTQHYGTREVDAALLLVPTVGFLPPDDERVLGTIRAVEEDLLRDGFVLRYRTQSGVDGLSGDENPFLACSFWLVEAYARCGRVDEAHALMDRLLAIRNDLGLLSEEYDPATGTLLGNFPQAFSHLALVRAALAVAEADTEAARR
>NZ_CP053707.1|WP_173030174.1|2878144_2881216_-|excinuclease-ABC-subunit-UvrA
MRGLSDPTPSIAGVSHDHLVVRGAREHNLKDVSIELPRDALVVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSAYARQFLGQMDKPDVDFIEGLSPAVSIDQKSTNRNPRSTVGTITEVYDYLRLLFARAGRPHCPVCGEPITRQSPQQIVDRLLELPERTRFQLLAPVVRARKGEYVDLFAELQAKGFSRARVDGEVVALTDPPKLEKQVKHTIDVVVDRLVAKGSDSSAKRRLTDSVETALGLAGGVVVVDFVDLEEGHPERERRYSEKMACPNDHPLAMDEVEPRSFSFNSPFGACPECSGIGTELEVDPDLIVPDDDLTLAQGAIAPWATASGAADYFQRVMSALADEMGFSMDTPWKQLPKKVRDSLLTGRNHKVHVRYRNRFGRERSYSTGFEGAIPFVRRRHSETDSDWSRERYEGYMREVPCPVCRGARLKPESLAVLIGGRSIADVSRLAIGDAAQFFSTVDFTERERQIAARVIKEIDARLGFLLDVGLEYLSLDRPAGTLSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNHRLIETLTRLRDLGNTLIVVEHDEDTIATADWVVDIGPGAGEHGGEVVHSGTVADLLTHPDSITGKYLSGRREIPTPTVRRPQERGREVVVVGATEHNLDNVTVGFPLGNLVAVTGVSGSGKSTLVNDILYNVMANKLNGARHVPGRHKSVTGLDHLDKVVHVDQSPIGRTPRSNPATYTGVFDHVRKLFATTEEAKIRGYQPGRFSFNVKGGRCDACSGDGTIKIEMNFLPDVYVPCEVCHGARYNRETLEVQYKGKSISDVLDMPIEEAAEFFAAVPAIARHMRTLNEVGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYVLDEPTTGLHFEDIRKLLKVLQGLVDKGNTVIVIEHNLDVIKSADWLVDLGPEGGSGGGLVIAEGTPEQVAALEDSHTGRFLAPILARTARTTTAPAKRAAATKAPATKASAAKRPATKAAAKKTAAKGTATRREPTRKATSRKAG
>NZ_CP053707.1|WP_173028872.1|2877223_2878123_+|hypothetical-protein
MTTFRHDETARTVARLAYRTLEPYHLAAYFGPHVDAAREELGVGWLGGYTGMRAAPLGAVPGRVVAATFFGFRPQAVAKAWGLALGRHTPSGLDEVRTRCLDAGLRSALGGDVGSPAVTELVGRLRPVLDRLDHGGRPLAAAFAAQDWPDAPHLALWHATALWREWRGDGHVAALTSAGLTPLESLVLYDAWLRATSPERAGRGRAFLQPTRKWTDEEWAGAEESLGTSGLLTPTHEGGAPTLTEAGRRLRDHLEDATDDASAAAWVGVDDAEQLLASARPVVKKVIDAGWLPGTPARA
>NZ_CP053707.1|WP_173028880.1|2891151_2892177_+|aldo/keto-reductase
MRYRRLGNSGCAVSELCLGTMTFGTETDEAGSHEQLDVFLEAGGTLVDTANVYSGGVSEEIIGRWLSKRPTDVTDRVVLATKGRFALGSGPNSSGLSARHLTRALDDSLDRLGVDSVDLYQVHASDEHTPMEETLRTLDGFVQAGKIRYYGLSNFTGWQLTKLVHTARALGLRPPVTLQPQYSLIVREIEWEIVPAALDAGMGLLPWSPLGGGWLSGKYTRDQRPTGDTRLGDDPNRGMEAYDRRGTERTWRIIEAVEQVAEARGVSMAEVALSWVTNRPAVTSTILGARTTEQLRANLRSVDVELTPEEVSALDTASDLGATDYPYGEMGVQQRSRDLAG
>NZ_CP053707.1|WP_173028881.1|2892228_2894343_-|excinuclease-ABC-subunit-UvrB
MRPTTELQRRVAPFEVVSEFSPAGDQPKAIEELARRINAGEQDVVLLGATGTGKSATTAWLVEQVQRPTLVMAPNKTLAAQLANEFRELLPHNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVIVVASVSCIYGLGTPQEYVDRMVPLRVGDEVNRDDLLRKFVHMQYTRNDLAFTRGTFRVRGDTVEIIPVYEEHAVRIEFFGDEVEALYTLNPLTGEVVREEQEMYVFPASHYVAGPDRMERAIGSIERELEDQLATFERQGKLLEAQRLRMRTTYDIEMMRQIGSCSGIENYSMHIDGREPGSAPNCLLDYFPDDFLLVIDESHQTVPQIGAMYEGDASRKRTLVEHGFRLPSAMDNRPLKWEEFLERIGQTVYLSATPGDYEMAKSDGYVEQVIRPTGLVDPEVIMKPTKGQIDDLLHEIRLRSEKNERVLVTTLTKKMAEDLTDYLLDNGVRVRYLHSDIDTLRRVELLRELRMGEYDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSTRSLIQTIGRAARNVSGQVHMYADKLTPSMRDAVEETTRRREKQVAYNLAHGVDPQPLRKKIADITDMLQREDADTQELLGSGRARSRGKADGGRGRGAVAADADAAMGTQRGKNLPASELAGLIQELSTQMHQAAADLHFELAARLRDEIGDLKKELRQMSEATR
>NZ_CP053707.1|WP_173028882.1|2894433_2895744_+|ROK-family-transcriptional-regulator
MTGVPAPPTVRRGSNLPRVGGYNQVVVLEAIRHHPDGLSRVELAEATGLSPQAVSNICRRLLDDDLVVEAGRRAQGPGKPRTLLRLKPSGRYAVGVHLDPAVVSHVLLDLTGRAVARTARALRPGADPDEVLRDVVEDVDRLVAGSGIDPGRLVGVGVAAPGPIDRAAGTLVRPPNLPGWERVAVRDSLADATGLPVLLDKDVVAAAVGEVWAGGLGPGATAVFLYLGTGVGAGLVVGGEVLRGASGNAGEVGHLGTGASGPSCWCGLGGCLGEVCAPAQVVRRAVREGIGDWDLDPAALDPATDPALAPPAGDPLHPGTSVLVAFDAFCDLADAGDPRAVALLEDWARHVAKAVTDLVDVLDADQVVFGGPLWARLAPTFLTHVPALVRGRAVGAAIHPVAVRGTVLGPDVAAVGAASTVLDHAFSARSSALLVD
>NZ_CP053707.1|WP_173028883.1|2895884_2897243_+|extracellular-solute-binding-protein
MQRTRPAALGAVALSLGIVLAGCGSGSSSGSGDTNTITVAYQRTAQFTQLDSVLKKAASEYEAANPGKKVKLTAIEAEQDQYFTKLALMNRSPSTAPDVIYEDSFQVRSDAAAGYLAPIDEQLAGWSDWSQFDDVAKQAGLGDDKKTYGVSMGTDTRALFYNKDIFAKAGLPTDWKPKTWDDVLSAARTIKQKAPGVTPINVYAGKAAGEATSMQGFEMLLYGTDSTLYDDSTQKWVTGSPGFKDSLSFYQTIFGEKLAPALDVALDATVGSRVATEMLPRGELAIALDGSWLPGQWIEGDNAWKGWEDTIGFAPMPTQNGQAPGSVSMSGGWLLSVGANAKDKNAAFDFIKVALNRDNSLKYDTENSQIAVRKDVASDEKYLSYNPSFEFFSSLVPTTHFRPATPDYSQISGNIQVAAESVATGSSTPDEAAKAYDEGLVGIVGQDKVQGG
>NZ_CP053707.1|WP_173030176.1|2897367_2898186_+|sugar-ABC-transporter-permease
MGIFLVGPIGYALYGSLTNAALSGYRAVAPEFVGFDNYTQLFTSSQFWESVWLTLVFVVGSALIGQNVLGMALALLVRNGPKRLGPVVSSLVVTAWVLPEIVAAFTLYAFFATDGTLNEMLGWVGLDGPTWLITVPLLTVVLANVWRGTAFSMMVYSAALAEVPPDLTEAAEIDGAGWWQRFIRITLPMVRRAIATNMMLTTLQTLGVFTLIWVMTGGGPGTQSSTLPILAFQQAFKFAQVGYGTAIATVTLLVGALFAVVYVKVLKPEVDS
>NZ_CP053707.1|WP_173028884.1|2898182_2899106_+|carbohydrate-ABC-transporter-permease
MTTPTTTPTPSAALPVPPTATRPPRRPRLSPAAPARTKGPRLAAGLALVLVGLAFLVPLAWILLSSVNPAATVSTSWPGEPTLENYREVLTPELTFRPLLNSLVVSGATAVIVVVVATLSAYPLSRYRMRFNRAFLHTILFGSCLPITAVMVPVYALFVTLGLLDSVPGTVLFLSATALPMAVWMTKNFMDSVPVSLEEAAWVDGASSMQALWRVVVPLMRPGMAVVFIFVFTQAWGNFFVPFVLLLDPAKQPAAVSIYTFFGTNGAVAYGQLAAFSVLYSLPVLVLYLVVQRLGGGSFALAGSVKG
>NZ_CP053707.1|WP_173028885.1|2899121_2902187_+|alpha-mannosidase
MHANSHLVELRVDRFVRERLVPGLHRRRTPLTVEWWEAPGEPVPFAEATASAFEPVSPGTRWGRPWGTTWFRATGTVPEGWGGDGTRVEVVADLGYSEDHPGFQAEATAYRPDGTVIKGLHPRNRYVPLAAASADGRSVEVVLEASSNPDVAGAGAFTFEPTPLGDLATAGREPRYRYDGVDLAEVDVEVWELLQDVTALRGLVAELPAGSRRAGALKALEDAVDAVDPDDVVGTAAAGRAALRPALDAGADASAHRVVAVGHAHIDSAWLWPTRETARKCARTFSNVLALMDEDPDLVFACSSAQQYAWVRDSQPELFERIKERVREGRFVPVGGMWVESDTNMPGGEALARQFVAGKRFFLEELGVEPEDVWLPDSFGYTAAMPQIALAAGARWFLTQKPSWNETNRMPHHTFWWEGIDGSRVFTHFPPADTYNSDVSAADLARAERNFSEKGRTDLSLLPFGYGDGGGGPTREMLAAAARTHDLEGSPRVELGDPHDFFRRAEAAYPDAPVWSGEMYLEFHRGTYTSQARTKRGNRRSEHLLREAELWATTAAVTTGAEYPYDALEQAWHTVLLQQFHDILPGSSIAWVHREAEAHYERVAGELETVVEDALASLAGEGDREVVFNAAPHDRDGVTALGAAVLDGSGPETPVRVEDSPDPDTGGWVVDNGLVRLVVDRDGLLASVRDLAAGGREVLAPGSRGALLQLHRDTPTQWDAWDVDEHYRRHTTDLVDAELVELVEKGPERVAVRVVRTFGSSRVEQVLALRAGSRVVDVELDVDWHERQKLLKLAFPLDVHADRAASEIQFGHVLRPTHTNTSWDAARFETCAHRWVHVGEPGYGVAVVNDSTYGHDVGRTSRGDAEATPGTTTTVRLSLLRAPVYPDPEADQGRHRLRAGLVVGAEVAEAVVEGYRANLPVRSVRGAAAPAPVVRVEGDPGVVVEAVKLAEDRSGDVVVRLYEAHGGRAHARLVAGFEASEVVETDLLERPLEQPRALTGSDGSLSLRPFQIATLRLRRAR
>NZ_CP053707.1|WP_173028886.1|2902209_2903637_-|APC-family-permease
MTTTDTTTVDEPSSGLKRSITGTQLFFYTLGDVLGSGIYVLVGLVAAAVGGAFWIAFGLGIVVAAITGSAYAELVTKYPRAAGASLYVKKAFGSPVLTFLVTVSFLSASFAATGSLATGFASYFATLFDGAGPPALLVSLVFVAVLLVVNFIGITESVVMNMLMTFVEVAGLLIIMAIGIYHVVQGDADFGVLADVNVDGNPALAVLAGIAFSFFAMTGFENTANVAEETVDPHRHFPRSLVGGMVVAGVVYVLVSMAAALTVPVDRLADSDAALLEVVKQGILPFSTDVMATVFSVIALVAITNTTLVTLVTQPRILYGMAREDVVPGVFATIHPRRRSPWVGLLFSGLVVAALLVTGTVVLQAGGGIDLVNRLALVTVVFLLFIYALVIVACLRLRGRDEHEKTFRANTPLLVLGLVGNLAILAFSIYDDPTSLLWCAGLLALGVVLYLVERVVGSKGTAARDAAPAGRTPGD
>NZ_CP053707.1|WP_173028887.1|2903726_2904911_-|dephospho-CoA-kinase
MLRVGLTGGIGSGKSTAARELARLGAHVVDADAVAREVVEPGRPALAEVARRFGSHLLREDGSLDRAALGRVVFGDPAALRDLEAITHPAIWARTAELVAAVPAGGVLVHDMPLVVEQGMTGEYHLVVVVGADEEVRVGRLVRDRGMDEVDARARVAAQADDAARRAAADVWLPNEGSPQALATAVRRLWHERLEPFAENLRTGTRSRLPAPVLCPPDDGWAPAAARLLARVRHGVGEAAATLDHVGSTAVPHLPAKDVVDLQVGVASLADADAPAFVAGMARMGFVRVDGVDEDHGKDGRPWPKRFHGSTDPGRVAHVHVREVGSPGWQFALLFRDWLRAEPGERDAYAAVKADLAARLVTTQEYADAKEPWFDAAHPRALAWAERTGWTPGA
>NZ_CP053707.1|WP_173028888.1|2904981_2906160_+|acyltransferase
MTTETRGAPTAGTRAGAPGSRLLALDGLRGVTIVLVVLGHLSAFLWPVEGIRSTPWLRGLVAGGAVPIFFVVSGYIVTAGLLREDERGTLDPVRFYARRLVRLGAQVVPLCAAVVLVAALDPTDTAPAGSTVTTVTHTLTYTNNWLYALDPLQARPDLGHLWFLSVQQQWYLVLPLAVAALAARRRVLTWVLVLLAVASATYRLVEVSDATWFGLSVGTFARADGLLLGAALAVALPALRRLAPRASVVGTLLLVAVPVLLSVGGELGPYAYLEDWSVAFVLVAAGLVAAVVLHERESGLTRALSARWLTWLGRASLVVYVWHYPVIFFVGRHVGPDASPVVTTAVVLSVVGVITVVSHRWVEEPVRRWLATHLRPAPTDRPLPPAPGVGVA

Crispr_ID: NZ_CP053707_12

• CRISPR_ID: NZ_CP053707_12
• CRISPR_location: 3762514-3762703
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 3 spacers

Consensus repeat of NZ_CP053707_12

Consensus_repeat	Method
GGCGGGCGTGCACCGATCGACACTTTCGACGATT	CRT

spacers of NZ_CP053707_12

>12.1|3762548|18|NZ_CP053707|CRT
TCTGCCCACCCGGGAGGA
>12.2|3762600|18|NZ_CP053707|CRT
GATGCACGCCCAGGGCGA
>12.3|3762652|18|NZ_CP053707|CRT
TCTGCCCACCCGGGAGGA

CRISPR arrays and Neighbor proteins around NZ_CP053707_12

CRISPR arrays

The CRISPR arrays of NZ_CP053707_12

>merge|NZ_CP053707|12|3762514-3762703|CRT
GGTCGCCGTGCACCGATCGACACTTTCGACGATTTCTGCCCACCCGGGAGGAGGCGGGCGTGCACCGATCGACACTTTCGACGATTGATGCACGCCCAGGGCGAGGCGGGCGTGCACCAATCGACACTTTCGACGATTTCTGCCCACCCGGGAGGAGGCGGGCGTGCACCGATCGACACTTTCGACGATT

>NZ_CP053707|12|2|3762514-3762703|CRT
GGTCGCCGTGCACCGATCGACACTTTCGACGATT	TCTGCCCACCCGGGAGGA
GGCGGGCGTGCACCGATCGACACTTTCGACGATT	GATGCACGCCCAGGGCGA
GGCGGGCGTGCACCAATCGACACTTTCGACGATT	TCTGCCCACCCGGGAGGA
GGCGGGCGTGCACCGATCGACACTTTCGACGATT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053707.1|WP_173030265.1|3755898_3756705_-|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl|CDD|223715
NZ_CP053707.1|WP_173030266.1|3758703_3759447_-|biotin--[acetyl-CoA-carboxylase]-ligase	unknown	unknown	gnl|CDD|223417
NZ_CP053707.1|WP_173029570.1|3766007_3767897_+|cation:proton-antiporter	unknown	unknown	gnl|CDD|223104
NZ_CP053707.1|WP_173029567.1|3761573_3762500_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP053707.1|WP_173029576.1|3771317_3772505_-|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl|CDD|173847
NZ_CP053707.1|WP_173029563.1|3756888_3757569_-|response-regulator-transcription-factor	unknown	unknown	gnl|CDD|223816
NZ_CP053707.1|WP_173029572.1|3768808_3769300_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP053707.1|WP_173030267.1|3759521_3761126_+|acyl-CoA-carboxylase-subunit-beta	unknown	unknown	gnl|CDD|227136
NZ_CP053707.1|WP_173030268.1|3762750_3763401_-|MOSC-domain-containing-protein	unknown	unknown	gnl|CDD|225167
NZ_CP053707.1|WP_173029564.1|3757582_3758689_-|adenylate/guanylate-cyclase-domain-containing-protein	unknown	unknown	gnl|CDD|143636
NZ_CP053707.1|WP_173030264.1|3755496_3755886_+|GtrA-family-protein	unknown	unknown	gnl|CDD|377229
NZ_CP053707.1|WP_173029562.1|3754184_3755369_-|5-(carboxyamino)imidazole-ribonucleotide-synthase	unknown	unknown	gnl|CDD|235674
NZ_CP053707.1|WP_173029574.1|3769296_3769614_+|transcriptional-regulator	unknown	unknown	gnl|CDD|316153
NZ_CP053707.1|WP_173029569.1|3765325_3765931_+|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|380054
NZ_CP053707.1|WP_173030269.1|3772644_3773049_+|MerR-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl|CDD|133403
NZ_CP053707.1|WP_173029571.1|3767927_3768587_+|septum-formation-inhibitor-Maf	unknown	unknown	gnl|CDD|178901
NZ_CP053707.1|WP_173029568.1|3763399_3765166_+|DUF885-domain-containing-protein	unknown	unknown	gnl|CDD|377577
NZ_CP053707.1|WP_173029575.1|3769743_3771321_-|acyl-CoA-carboxylase-subunit-beta	unknown	unknown	gnl|CDD|227136
NZ_CP053707.1|WP_173029561.1|3753651_3754188_-|5-(carboxyamino)imidazole-ribonucleotide-mutase	unknown	unknown	gnl|CDD|376377
NZ_CP053707.1|WP_173029565.1|3761125_3761368_+|acyl-CoA-carboxylase-subunit-epsilon	unknown	unknown	gnl|CDD|379386

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP053707.1|WP_173030265.1|3755898_3756705_-|HAMP-domain-containing-histidine-kinase	gnl|CDD|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	5.58063e-35
NZ_CP053707.1|WP_173030266.1|3758703_3759447_-|biotin--[acetyl-CoA-carboxylase]-ligase	gnl|CDD|223417	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism].	4.70085e-54
NZ_CP053707.1|WP_173029570.1|3766007_3767897_+|cation:proton-antiporter	gnl|CDD|223104	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism].	2.08837e-74
NZ_CP053707.1|WP_173029576.1|3771317_3772505_-|acyl-CoA-dehydrogenase-family-protein	gnl|CDD|173847	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.	3.35614e-143
NZ_CP053707.1|WP_173029563.1|3756888_3757569_-|response-regulator-transcription-factor	gnl|CDD|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.04261e-87
NZ_CP053707.1|WP_173030267.1|3759521_3761126_+|acyl-CoA-carboxylase-subunit-beta	gnl|CDD|227136	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism].	0
NZ_CP053707.1|WP_173030268.1|3762750_3763401_-|MOSC-domain-containing-protein	gnl|CDD|225167	COG2258, COG2258, Uncharacterized protein conserved in bacteria [Function unknown].	3.88034e-52
NZ_CP053707.1|WP_173029564.1|3757582_3758689_-|adenylate/guanylate-cyclase-domain-containing-protein	gnl|CDD|143636	cd07302, CHD, cyclase homology domain. Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.	9.15002e-29
NZ_CP053707.1|WP_173030264.1|3755496_3755886_+|GtrA-family-protein	gnl|CDD|377229	pfam04138, GtrA, GtrA-like protein. Members of this family are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. The GtrA family are a subset of this family. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved is in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyzes the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b). This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose.	4.93758e-19
NZ_CP053707.1|WP_173029562.1|3754184_3755369_-|5-(carboxyamino)imidazole-ribonucleotide-synthase	gnl|CDD|235674	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed.	2.12688e-157
NZ_CP053707.1|WP_173029574.1|3769296_3769614_+|transcriptional-regulator	gnl|CDD|316153	pfam13601, HTH_34, Winged helix DNA-binding domain.	1.9418e-30
NZ_CP053707.1|WP_173029569.1|3765325_3765931_+|TetR/AcrR-family-transcriptional-regulator	gnl|CDD|380054	pfam17920, TetR_C_16, Tetracyclin repressor-like, C-terminal domain. TetR family regulators are involved in the transcriptional control of multidrug efflux pumps, pathways for the biosynthesis of antibiotics, response to osmotic stress and toxic chemicals, control of catabolic pathways, differentiation processes, and pathogenicity. The TetR proteins identified in overm ultiple genera of bacteria and archaea share a common helix-turn-helix (HTH) structure in their DNA-binding domain. However, TetR proteins can work in different ways: they can bind a target operator directly to exert their effect (e.g. TetR binds Tet(A) gene to repress it in the absence of tetracycline), or they can be involved in complex regulatory cascades in which the TetR protein can either be modulated by another regulator or TetR can trigger the cellular response. This entry represents the C-terminal domain found in a number of different TetR transcription regulator proteins found in Actinobacteria. TetR regulates the expression of the membrane-associated tetracycline resistance protein, TetA, which exports the tetracycline antibiotic out of the cell before it can attach to the ribosomes and inhibit protein synthesis. TetR blocks transcription from the genes encoding both TetA and TetR in the absence of antibiotic. The C-terminal domain is multi-helical and is interlocked in the homodimer with the helix-turn-helix (HTH) DNA-binding domain.	1.46992e-24
NZ_CP053707.1|WP_173030269.1|3772644_3773049_+|MerR-family-DNA-binding-transcriptional-regulator	gnl|CDD|133403	cd04776, HTH_GnyR, Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	1.76045e-52
NZ_CP053707.1|WP_173029571.1|3767927_3768587_+|septum-formation-inhibitor-Maf	gnl|CDD|178901	PRK00148, PRK00148, Maf-like protein; Reviewed.	1.79643e-84
NZ_CP053707.1|WP_173029565.1|3761125_3761368_+|acyl-CoA-carboxylase-subunit-epsilon	gnl|CDD|379386	pfam13822, ACC_epsilon, Acyl-CoA carboxylase epsilon subunit. This family includes the epsilon subunits of propionyl-CoA carboxylase, EC:6.4.1.3, and acetyl-CoA carboxylase, EC:6.4.1.2. These enzymes are involved in the biosynthesis of long-chain fatty acids. The epsilon subunit is necessary for an efficient interaction between the alpha and beta subunits of these enzymes.	0.00237535
NZ_CP053707.1|WP_173029575.1|3769743_3771321_-|acyl-CoA-carboxylase-subunit-beta	gnl|CDD|227136	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism].	0
NZ_CP053707.1|WP_173029561.1|3753651_3754188_-|5-(carboxyamino)imidazole-ribonucleotide-mutase	gnl|CDD|376377	pfam00731, AIRC, AIR carboxylase. Members of this family catalyze the decarboxylation of 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR). This family catalyze the sixth step of de novo purine biosynthesis. Some members of this family contain two copies of this domain.	1.23679e-81
NZ_CP053707.1|WP_173029568.1|3763399_3765166_+|DUF885-domain-containing-protein	gnl|CDD|377577	pfam05960, DUF885, Bacterial protein of unknown function (DUF885). This family consists of several hypothetical bacterial proteins several of which are putative membrane proteins.	0

Protein sequences

>NZ_CP053707.1|WP_173029567.1|3761573_3762500_+|hypothetical-protein
MDADDPRSPFLATDAAAMGISRRALHGGRYRPVVRAVFIDARVPDTVVVRSRAALLVAPDGAVLSHWTAARLWGGRVPENDSVHVSFSRRVRWRLRGVKPHCYIHRLATARRHGLPVTTPAATFCLLAAFLGLVDLVALGDSLVRRGHITPHDLCASAEGWVGQHRAEAIEAARLVRDGVDSSPETTLRLLMVLSGLPEPRINVTVYRDDGSIRYRIELAYEEQRAAIEYDGRWHEEPAQRVRDSSRREGLAAQERWTFVVVTPDELFSATEDLVDRLHSELRALGVPVPPRPDDAWRQYFRVARIAA
>NZ_CP053707.1|WP_173029565.1|3761125_3761368_+|acyl-CoA-carboxylase-subunit-epsilon
MAASPSSPETAQAADAPPAIVVHGPATAEDVAAVVAVLAAAGAGEQPAPTGRTSTWAAHDAAVRRPVGHGPGAWHTAFRR
>NZ_CP053707.1|WP_173030267.1|3759521_3761126_+|acyl-CoA-carboxylase-subunit-beta
MGGTDVPTDIDTTTTAGKLADLKRRVAEVAGAGSERAVEKQHARGKKTARERLEMLLDEGSFVEMDKYARHRSVSFGQDRNRPYGDGVVTGYGTVDGRTVAVFAQDFTVFGGSLGEVFGEKICKVMDFAMKVGCPVVGLNDSGGARIQEGVVSLGLYGEIFRRNVHASGVVPQISLVMGPCAGGAVYSPAVTDFTVMVDQTSHMFITGPDVIKTVTGEDVGFEELGGARTHNTKSGVAHYMGTDEEDAVEYVKALLSYLPSNNMEDPPVFGDELDLEVTDDDRFLDTIVPDSPNVPYDMHQVIEKILDDGEFLEVSPLFAPNIITGFGRVEGRSVGVVANNPMQFAGTLDIDASEKAARFVRTCDAFNVPVLTLVDVPGFLPGTDQEWDGIIRRGAKLIYAYAEATVPLVTVITRKAYGGAYDVMGSKHLGADINLAWPTAQIAVMGAQGAVNILYRKELAKAAEKGESVEEARATFIKQYEDALANPYVAAERGYVDTVITPSNTRMNVTKALRALRTKRETLPPKKHGNIPL
>NZ_CP053707.1|WP_173030266.1|3758703_3759447_-|biotin--[acetyl-CoA-carboxylase]-ligase
MDAASVTPGDPWLPVEVRERVGSTNDEVRADPRPWRVLVAEVQESGRGRLGRAWTTTPGTALAVSVCVPVPVSGAGWVPLLAGLALHRAVAEVAGVTTSLKWPNDVLVPGDDDRKLAGLLCEWVPPAGVVVGCGVNVDTAREELPLDTATSLRAAGAPGVDRAALLTAYLRHLAAVLREDTGPAGASVAAYRDACGTVGRDVEVHQPDGAVRRGRATGVDAEGRLAVRTEAGTTTVSAGDVVHVRSR
>NZ_CP053707.1|WP_173029564.1|3757582_3758689_-|adenylate/guanylate-cyclase-domain-containing-protein
MTHEPPGEETVLPVPPPEPAADDLAERVERSLLGRSASMARAEVSAAAGVDPAEARRFWHAMGFQVVEDDEAMFTEADRAALRRVSDLVQSGAVSEELALGMTRAFARTADRLAVWQTQLVAESFTPEVSDQLEGKDTRSVPEPRIAADAANLLSRTIDDIEPLLVYVWRRHLTNAIQRMLADADPAVRSDPSAPVRAVGFADLVSFTSFVRRMSERQLARLVQHFELLASDVVAEHGGRVIKTVGDEVLFVHTDIAAASAIALDLVDAMAGDELLPPVRVGMAHGRVVSRLGDVFGVTVNKASRITAVTPSGTVFVDEDMARALGSVSGFTAVERRRRMLRGIGVVTLHELQRAPGGRRPAVPNGSA
>NZ_CP053707.1|WP_173029563.1|3756888_3757569_-|response-regulator-transcription-factor
MTKVLLAEDDPAISDPLARALRREGYDVEVCSDGESALAAALRQPDLVVLDLGLPKMDGLEVCRRLRQEGSGVPVLILTARADEVDTVVGLDAGADDYVTKPFRLAELLARARALLRRGVVEATEDEGQQLIDIDPDGRRVFLRGEEVQLTGKEFELLRVLVANEGKVVSREKLMRDVWDSAWYGSTKTLDMHISVLRRKLGDDAASPRYITTIRGLGFRFDSPED
>NZ_CP053707.1|WP_173030265.1|3755898_3756705_-|HAMP-domain-containing-histidine-kinase
MWLAERSAARVSTLLETLRQRVDRLNAGDRPVPLDSGIVEVDKLDAALVRGAAQGARRLASERDFAADASHQLRTPLTALLMRLEEINLTDDLTVVAEESTIAIGQVERLSKVVDDLMTRTRHGAEVNPSVSLDSVLASLQREWQPAFAQARRSIKVSGERGLVVRATPVSLGQILTTLLENSLAYGRGTVEVNARRAGPSVVIEVSDQGDGVPPSMAPHIFERSVSSSGSGLGLSLARDLAEGAGGRLELARATPPVFALFLSLSTD
>NZ_CP053707.1|WP_173030264.1|3755496_3755886_+|GtrA-family-protein
MIKFGVVGAIAFVIDLGGANLLWHTVLADKITTAKIISGAVATLVAWIGNRQWTFRHRRSRPVHHEVILFFGVNLVALGISAVVLAVSHYGLGFTSRLADNVATIVGIGLGTLFRFWAYRRLVFSHEPI
>NZ_CP053707.1|WP_173029562.1|3754184_3755369_-|5-(carboxyamino)imidazole-ribonucleotide-synthase
MTTPRRAPGGFPVVGIVGGGQLARMCAGPAAELGVTLSVLAEAEDASAALVVPSSPVGHHTDAEAVLAFAQACDVVTFDHEHVPPEVLEQLVATGVPVHPTPDALRFAQDKLAMRERLTALGVPCPRWARADTAADVEAFAAEVGWPLVAKTPRGGYDGKGVAVVSSADELRDWLARAQEAGTGLLLEEKVPFRRELAVLLARSPSGQAAAWPVVETVQTDGICTEVLAPAPTLDADLSARAVEAGLRVAGELGVTGVLAVELFEVEGEGGEPGFVVNELAMRPHNSGHWSMDGAVTGQFEQHLRAVLDLPLGSPRPRAPWTVMANVLGGDYPELYPAYRHVMARDPEAKVHLYGKGVRPGRKIGHVNVSGDDLADLRERAGHAADYLQGVVTE
>NZ_CP053707.1|WP_173029561.1|3753651_3754188_-|5-(carboxyamino)imidazole-ribonucleotide-mutase
MSTTQDAPTGAPVVGVVMGSDSDWPVMEAAVAALEEFGVACEVDVVSAHRMPEEMLEYGRSAEERGLRVLVAGAGGAAHLPGMLASVTSLPVIGVPVPLKYLDGMDSLLSIVQMPAGVPVATVSVGGARNAGLLAARILGAGEGAEAQRLRAAMGEFRAALRDQAHAKGAALRERRQG
>NZ_CP053707.1|WP_173030268.1|3762750_3763401_-|MOSC-domain-containing-protein
MRSVNVGASRDGVGSRGRASAIDKQPVASVEVRDPGPKRGGLGSGVVGDDVVSRRHHGGSSQAVYAVAREELDHWGGVLERVLPDGQFGENLTTQGLDVDGAVVGERWRVGSALLEVTGPRIPCATFGAWMGERGWVRRFTERGRTGAYLAVVEPGTVSTGDVVEVLERPAHGIVVPRVFRALCGDLEAADEVLGARVLDAQHHAELERSVARRTP
>NZ_CP053707.1|WP_173029568.1|3763399_3765166_+|DUF885-domain-containing-protein
MRAVTAPSLGRETEGPEPVASGSVPRVSEPTTVRTPTAVDAVADAHFDAAVALSPMEATYLGVPGHEHELDDLSPEGYAAHADLARSTLARLEVTEPVDDVDRVTVAAMRERLGLALETHEAGLDRMQLDVIASPLQGVRDVLDLMATDTRDDWATMAARVAQVPRALEQYTGTLRESADRGLVTPRRQVEACIRQCEDLVAPDGYFATFLASARVGDQPLDDAVAADLRRAVEGAAAAYRRAGEDLATYLLDRAPESDAAGRDRYALASRSFLGASVDLEETYAWGQEELARITADMERTARRIVPGGTVDDAVAHLDRDETYRLHGTDALQAWMQVRADEAIGALAGTHFDIPEPVRTIECRIAPTQTGGIYYTGPSDDFARPGRMWWSVPKGVTEFGTWKELTTVYHEGVPGHHLQVAQTVYRRELLNKWRRMMCWVSGHGEGWALYAERLMAELGYLEDPGMYLGMLDAQSLRAVRVVIDIGVHCGFDAPAEVGGGAWTYEKAWTMLSRHARNDEASLRFELDRYLGWPGQAPSYKVGERLWLQMRDEVAAREGDAFSLKDFHRRALDVGSVGLDVLRTAVVGA
>NZ_CP053707.1|WP_173029569.1|3765325_3765931_+|TetR/AcrR-family-transcriptional-regulator
MPRSRGRRPAGSTTREDILAAATHLFGEHGYPGTTLRAIAREADVDTRLVTHYFGTKQNLFVAVVDFPFDPDQLAGAVLSEGPDRAGYRLAQVVVRMFDDPGTRQSMTGLVRAAASEDDAALLVRDVLSERMLTPLARLLGEDEPELRASLIGSQLVGYIFSRYVLSLPGIPDEDPDRLAAAVGPVLQHYLTGALEEAVPR
>NZ_CP053707.1|WP_173029570.1|3766007_3767897_+|cation:proton-antiporter
MEPAALVVAIILVVIVVSRLAAPLRVPAPIALLVVGAVLSAVPQVPEIRLSPEVALFGLLPPLLYSAALSSSLVDIRTFRSKILSLSVGLVLFTAFGVALVVWALLPGVSFALALALGAIVAPPDAVAATAVARRIGLPRKITTILEGESLLNDATALVTLRTALAAAGLAAHGAEITQVTFATVTLDLLVAAVGGVAVGVVAFVVIGWLRRRLTEVAADTALSFIAPFVAYAPAEAVGASGVLAVVTAGLLLAYRAPILQSAPSRLAERINWGSVTFVLENAVFLLIGLQVWTLIRDTRTGELGTGRTLAVAGAVLVTVLLLRPLWLLGQAAVQVLRGRADRRQVLGWSLVSGWAGMRGVVTLAAALTLPEETPMRPELVLIALVVTVGTLVLQGTTLPALARALDVRGPDPREDALQEATVLGATTGAGLRHLEADPDIDQDVLEVIRQQAADRVNRSWERLGTLGPTDRESPAEARARLRAEMIRAEREELLRIRGNGEVDHAVLTSVLGQLDAEETALGWNATRTAGVRASELRPPDRVAGACEHLADDSAPHPPSDTEGCPECRAEGLTWVHLRSCTECGHVGCCDSSVGQHASRHFHTSGHPVMRSIEPGEAWRWCFVDEVLG
>NZ_CP053707.1|WP_173029571.1|3767927_3768587_+|septum-formation-inhibitor-Maf
MPDVTLVLASASPARLATLRSAGVEPVVRVSDVDEPAAVAAAEEEHGTLAAEDVTLLLARAKAEDVVATLEDSGEDLQVELVLGCDSMLELDGEIHGKPADAEEAVARWRRMRGRSGVLHTGHWLVDLRDPGDGGTGGQLGGTATTTVHFADLSDEEIDDYVATGEPLRVAGAFTLDGLGGPYVAGIEGDPGTVVGVSLPLLRELVGELGLAWHDLRTR
>NZ_CP053707.1|WP_173029572.1|3768808_3769300_+|hypothetical-protein
MNDTTREGPTMNDITPQQAREQLAHAEAATGRRDAERRVHALATAAFGLLIGVFLAVSRISEDTRYESVVIAFYALALVALTTWQTRGARAWPRHARRTSWVGLGTTMVLFLAAVMVFNVREMQQERAGLPQTENIGLLVLAGLLVAAPMVLAGLRIRRGDQR
>NZ_CP053707.1|WP_173029574.1|3769296_3769614_+|transcriptional-regulator
MSTDGATRPAHARHRLDDVIHAPVRFSIVATLAGVDEAEFALVRDEVEVSDSVLSKQVSTLEQAGYVKVRKGYVGKRPRTWLSLTRPGRTAYEGHLAALREIAGG
>NZ_CP053707.1|WP_173029575.1|3769743_3771321_-|acyl-CoA-carboxylase-subunit-beta
MSDTAAPAPGSDPRVADVRARLEAAHAASAAPLEKAAAKLASQGKLYVRDRIALLLDEGSFVEDGRYANSRAAGLPADGVVTGRGTVDDRPVVVIANDPTVKAGSWGARTVEKIVRATETALREELPVFWLVDSAGARITDQVEMFPGRRGAGRIFHNQVALSGRVPQICCLFGPSAAGGAYIPSFCDVIIMVEGNASMYLGSPRMAEMVVGEKVSLEEMGGARMHCTVSGVGDLLASDDTEAIELARLYFSYVPDSWRVSPPSYHAEEPTAPLTRASVPERESQPFDVHELIDGLVDDDSFFEVKPLFAPELVVGFGRMNGESVGVVANNSAVKGGVLFTDSADKAARFIWLCDAFSIPLVYLADVPGFMIGSEVERGGIIRHGAKMVSAVASATVPQFCVVVRKAYGAGLYAMGGPGFGPDATIALPTARIAVMGPEAAVNAVYANKIAEVEASEGVEARDAFVEARRAEYLEDVDLERLAADLVVDQVVEADELRAELLHRLRYAARRDRHFSTRRRDVPPV
>NZ_CP053707.1|WP_173029576.1|3771317_3772505_-|acyl-CoA-dehydrogenase-family-protein
MYELSKDHEDFRAVVREFATDAVEPHVAQWDRDHHFPADLVPRMGDLGLFGLVVPEAFGGSLEDADGGAFTSLCIAIEELGRVDQSIGITLSAGVGLGINPILTYGSEEQKERFLPDLVAGRALAGFGLTEPDAGSDAGATRTKAVLDGGDWVVDGSKAFITNSGTDITSVVTVTARTGTLDNGRPEISAIMIPSGTAGFTVEPAYHKMGWNISDTHGLSFAGCRVPEENLLGERGRGFHQFLKTLDDGRIAISALALGLITRMREEAAAYAKTRTAFGRPIGVNQGVAFPVADLAVMEDAARLLTYRAAWLKDEHEAGRRSVEEVKQAAAKAKLYTSEAAVTATRIATQVFGGNGFMEEYPVARFYRDAKILEIGEGTSEVQRMVLAKGLGLPA
>NZ_CP053707.1|WP_173030269.1|3772644_3773049_+|MerR-family-DNA-binding-transcriptional-regulator
MPDADDPGGDSPTWSIAEVADEFGVTHRTVRHYEDLGLISPERRGTTRVYHRRDRTRLGLVLRGKRLGFPLEEIRTIIDLYDAPRGRRSQLEYVLAQIDERRADLEQRRRDLEAALAELDGFERRCRTDLDRMR

Crispr_ID: NZ_CP053707_13

• CRISPR_ID: NZ_CP053707_13
• CRISPR_location: 3944199-3944274
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP053707_13

Consensus_repeat	Method
CGTGGGGGCGAGAGCCCACGGTCC	CRISPRCasFinder

spacers of NZ_CP053707_13

>13.1|3944223|28|NZ_CP053707|CRISPRCasFinder
GCCGCTCCTCACCACCGCAGGACCCGTT

CRISPR arrays and Neighbor proteins around NZ_CP053707_13

CRISPR arrays

The CRISPR arrays of NZ_CP053707_13

>merge|NZ_CP053707|13|3944199-3944274|CRISPRCasFinder
CGTGGGGGCGAGAGCCCACGGTCCGCCGCTCCTCACCACCGCAGGACCCGTTCGTGGGGGCGAGAGCCCACGGCCA

>NZ_CP053707|13|10|3944199-3944274|CRISPRCasFinder
CGTGGGGGCGAGAGCCCACGGTCC	GCCGCTCCTCACCACCGCAGGACCCGTT
CGTGGGGGCGAGAGCCCACGGCCA

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053707.1|WP_173029789.1|3941053_3941980_-|hypothetical-protein	unknown	unknown	gnl|CDD|184918
NZ_CP053707.1|WP_173029792.1|3946076_3946802_-|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl|CDD|213222
NZ_CP053707.1|WP_173029785.1|3934915_3936496_-|succinate-semialdehyde-dehydrogenase-(NADP(+))	unknown	unknown	gnl|CDD|236501
NZ_CP053707.1|WP_173029800.1|3953792_3954623_-|ribokinase	unknown	unknown	gnl|CDD|238579
NZ_CP053707.1|WP_173029786.1|3936747_3937869_-|GuaB3-family-IMP-dehydrogenase-related-protein	unknown	unknown	gnl|CDD|236322
NZ_CP053707.1|WP_173029797.1|3949939_3950233_-|co-chaperone-GroES	unknown	unknown	gnl|CDD|178988
NZ_CP053707.1|WP_173030293.1|3933137_3934859_-|GMC-family-oxidoreductase	unknown	unknown	gnl|CDD|225186
NZ_CP053707.1|WP_173029784.1|3932853_3933045_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP053707.1|WP_173029793.1|3946798_3947332_-|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl|CDD|367559
NZ_CP053707.1|WP_173029787.1|3937807_3939724_+|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl|CDD|129794
NZ_CP053707.1|WP_173029799.1|3951748_3953734_-|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl|CDD|173839
NZ_CP053707.1|WP_173030294.1|3942031_3943534_-|IMP-dehydrogenase	unknown	unknown	gnl|CDD|376340
NZ_CP053707.1|WP_173029790.1|3943827_3944118_+|WhiB-family-transcriptional-regulator	unknown	unknown	gnl|CDD|376791
NZ_CP053707.1|WP_173029795.1|3948196_3949813_-|chaperonin-GroEL	unknown	unknown	gnl|CDD|234573
NZ_CP053707.1|WP_173029788.1|3939792_3940851_+|P1-family-peptidase	unknown	unknown	gnl|CDD|225732
NZ_CP053707.1|WP_173029791.1|3944667_3946080_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP053707.1|WP_173029794.1|3947398_3948094_-|aspartate/glutamate-racemase-family-protein	unknown	unknown	gnl|CDD|224707
NZ_CP053707.1|WP_030528816.1|3944352_3944580_+|RNA-binding-S4-domain-containing-protein	unknown	unknown	gnl|CDD|379097
NZ_CP053707.1|WP_173030292.1|3932463_3932772_-|DUF1905-domain-containing-protein	unknown	unknown	gnl|CDD|378097
NZ_CP053707.1|WP_173029798.1|3950479_3951742_+|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl|CDD|380115

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP053707.1|WP_173029789.1|3941053_3941980_-|hypothetical-protein	gnl|CDD|184918	PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional.	0.000317406
NZ_CP053707.1|WP_173029792.1|3946076_3946802_-|ABC-transporter-ATP-binding-protein	gnl|CDD|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	2.06989e-84
NZ_CP053707.1|WP_173029785.1|3934915_3936496_-|succinate-semialdehyde-dehydrogenase-(NADP(+))	gnl|CDD|236501	PRK09407, gabD2, succinic semialdehyde dehydrogenase; Reviewed.	0
NZ_CP053707.1|WP_173029786.1|3936747_3937869_-|GuaB3-family-IMP-dehydrogenase-related-protein	gnl|CDD|236322	PRK08649, PRK08649, GuaB3 family IMP dehydrogenase-related protein.	0
NZ_CP053707.1|WP_173029797.1|3949939_3950233_-|co-chaperone-GroES	gnl|CDD|178988	PRK00364, groES, co-chaperonin GroES; Reviewed.	2.72461e-50
NZ_CP053707.1|WP_173030293.1|3933137_3934859_-|GMC-family-oxidoreductase	gnl|CDD|225186	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism].	3.7984e-43
NZ_CP053707.1|WP_173029800.1|3953792_3954623_-|ribokinase	gnl|CDD|238579	cd01174, ribokinase, Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides and histidine, and for entry into the pentose phosphate pathway. Ribokinase is dimeric in solution.	1.28001e-91
NZ_CP053707.1|WP_173029787.1|3937807_3939724_+|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl|CDD|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	5.54703e-135
NZ_CP053707.1|WP_173029799.1|3951748_3953734_-|acyl-CoA-dehydrogenase-family-protein	gnl|CDD|173839	cd01150, AXO, Peroxisomal acyl-CoA oxidase. Peroxisomal acyl-CoA oxidases (AXO) catalyze the first set in the peroxisomal fatty acid beta-oxidation, the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. In a second oxidative half-reaction, the reduced FAD is reoxidized by molecular oxygen. AXO is generally a homodimer, but it has been reported to form a different type of oligomer in yeast. There are several subtypes of AXO's, based on substrate specificity. Palmitoyl-CoA oxidase acts on straight-chain fatty acids and prostanoids; whereas, the closely related Trihydroxycoprostanoly-CoA oxidase has the greatest activity for 2-methyl branched side chains of bile precursors. Pristanoyl-CoA oxidase, acts on 2-methyl branched fatty acids. AXO has an additional domain, C-terminal to the region with similarity to acyl-CoA dehydrogenases, which is included in this alignment.	1.30076e-176
NZ_CP053707.1|WP_173030294.1|3942031_3943534_-|IMP-dehydrogenase	gnl|CDD|376340	pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain. This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family.	0
NZ_CP053707.1|WP_173029790.1|3943827_3944118_+|WhiB-family-transcriptional-regulator	gnl|CDD|376791	pfam02467, Whib, Transcription factor WhiB. WhiB is a putative transcription factor in Actinobacteria, required for differentiation and sporulation.	2.35001e-24
NZ_CP053707.1|WP_173029795.1|3948196_3949813_-|chaperonin-GroEL	gnl|CDD|234573	PRK00013, groEL, chaperonin GroEL; Reviewed.	0
NZ_CP053707.1|WP_173029788.1|3939792_3940851_+|P1-family-peptidase	gnl|CDD|225732	COG3191, DmpA, L-aminopeptidase/D-esterase [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism].	7.17283e-81
NZ_CP053707.1|WP_173029793.1|3946798_3947332_-|helix-turn-helix-transcriptional-regulator	gnl|CDD|367559	pfam03551, PadR, Transcriptional regulator PadR-like family. Members of this family are transcriptional regulators that appear to be related to the pfam01047 family. This family includes PadR, a protein that is involved in negative regulation of phenolic acid metabolism.	1.28937e-14
NZ_CP053707.1|WP_173029794.1|3947398_3948094_-|aspartate/glutamate-racemase-family-protein	gnl|CDD|224707	COG1794, RacX, Aspartate racemase [Cell envelope biogenesis, outer membrane].	4.2893e-103
NZ_CP053707.1|WP_030528816.1|3944352_3944580_+|RNA-binding-S4-domain-containing-protein	gnl|CDD|379097	pfam13275, S4_2, S4 domain. The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4.	5.34979e-24
NZ_CP053707.1|WP_173030292.1|3932463_3932772_-|DUF1905-domain-containing-protein	gnl|CDD|378097	pfam08922, DUF1905, Domain of unknown function (DUF1905). This domain is found in a set of hypothetical bacterial proteins.	7.77095e-21
NZ_CP053707.1|WP_173029798.1|3950479_3951742_+|class-I-SAM-dependent-methyltransferase	gnl|CDD|380115	pfam18096, Thump_like, THUMP domain-like. This is a domain of unknown function found in bacteria.	2.29442e-20

Protein sequences

>NZ_CP053707.1|WP_173029790.1|3943827_3944118_+|WhiB-family-transcriptional-regulator
MAEITRLPGPVADLWEWQLEGSCRRVGPEVFFHPEGERGSKRSRRATAAKEICLACPVIQQCREHALAVREPYGVWGGLTEDERESVYARQRHLAS
>NZ_CP053707.1|WP_173030294.1|3942031_3943534_-|IMP-dehydrogenase
MPAGPFAALGLTYDDVLLQPGETDVIPSEVDTTSRLTRDISLRVPLVSAAMDTVTEARMAIAMARNGGLGILHRNLSIEDQAYQVDLVKRTQTGMISNPVTIGPDATLEELDDICGRYRVSGLPVVDPGEHLLGIVTNRDLRFTPVAEWADTLVRDVMTPMPLITGHVGISHEEATSLLRQHKRERLPIIDTEGRLRGLITVKDFVKSEQFPHASKDADGRLLVGAAVGYFGEAWERAATLVDAGVDVLVVDTAHGHARLLLEMIERVKKDPALRHVQVIGGNVATRAGAQALVDAGVDAVKVGVGPGSICTTRVVAGVGVPQVTAIYEASLACRPAGVPLIGDGGLQYSGDIAKALVAGADTVMVGSLLAGCEESPGELVFINGKQFKAYRGMGSLGAMSSRGKKSYSKDRYFQADVTSDDKIVPEGIEGQVAYRGPVGAVVHQLVGGLHQSMFYVGARTTRELKERGRFIRITTAGLRESHPHDVTGIVEAPNYSSSR
>NZ_CP053707.1|WP_173029789.1|3941053_3941980_-|hypothetical-protein
MRRLLVLLPLLLAALAGGCGSAPGPVEPSRSASRPDPSLPQRAPTPSPVPVEGGVVSAVPRPTPAAPAPVPPAGEGSSSTAGSGGGASLEGDTRNQVVWAPLSDPSAVRSEGSVGSTKAWSTSKVLVVAAYLDTAVDGDPSRIPSAERGWIRAALTASDGDAVVAVRERIPGSPGAAITAVLRSIGDTSTVAPDRSQGAMSWTPREQVRFMAALAAGRVVSPEASAFLLEQMRPIPQHRWGLGTIGASTFKGGWLTSASETRQMGIVDGYAVAIITVGQGPAVVQTDGDAAHVEQMNRLAALLATRLR
>NZ_CP053707.1|WP_173029788.1|3939792_3940851_+|P1-family-peptidase
MRPGTHNAITDVEDVLVGHATRDEPGWLTGVSVVLPPPGTVGGVDVRGGGPGTRETDLLDPANAVDAVDAVVLAGGSAFGLAAADGVADAVWAAGRGWPVGPGPDERVPIVPSAIVFDLGRAGVWRHHPGPADGATAHAAASTGPVAQGSVGAGTGARAGGLRGGVGTASAVLDSGVTVGALVVVNAVGSPLARDGSLLGAAWGLGDELDGLPDPSPTALERHLAARRAEVEAQRAGRAEALRPGRATTLAVVATDAGLTKAACRRLATVAHDGMARALSPVHTAFDGDTVFSLATGARPAPEPLDLVELHDAAAGCVTRAIVHALLAADSVDRSADGGLAALSWRDALTTP
>NZ_CP053707.1|WP_173029787.1|3937807_3939724_+|DHA2-family-efflux-MFS-transporter-permease-subunit
MSSKEYARRPRLPRPISISVTRAAYRRPHRPFGPLPPDREDGGPRIGYPPVGGLGHTGPRHRRHPPVRVRRPLAARRGHPPLDPRHGAHVSAAAPAPTAPPEYPEKIDAAVLKIAGVVVLGAIMSILDITVVNVALRTLQQDFAVDGVPLDYSTVAWTVTGYTLALATVIPLSGWAADRFGTKRLYMTAVALFTAGSVLCAAATSIEMLVAFRVLQGLGGGMLMPLGMTIMTRAAGPKRMGRLMAVLGIPMLLGPIFGPILGGWLIDHFSWHWIFLINLPIGLVALGYSWFALPADRPHPSESLDWRGVLMMSPGLALFLYGVSSIPEQGGVAHAKVLGPGIVGVLLIVAFVIYSFRPQHPLLDLRLFRNRNLTVAIITMFIFAASFFGGLLLIPQFLQQVQGETPLSAGWILAPQGLGAMLTMPIAGALVDRFPVGRIVPFGLLLITGGMFALTQIDADSSHWGFIIPVLFVMGLGMGGTMMPIMTSALKTLNHHEVARGTTLLNITQQVASSIGVAIFSVILTNAFKDRPLVGQGGLYLETLQTKGPEAAQGVLAQVPLVGEFLAQQAGDPQAAVAALGARVADVAADAYAHTFWFAAGFVTLTLVSAAFLPRKHEESHLLEGADADELAPPVVIH
>NZ_CP053707.1|WP_173029786.1|3936747_3937869_-|GuaB3-family-IMP-dehydrogenase-related-protein
MTEIEIGRGKRGRRAYSFDDIAIVPSRRTRDPQEVSTGWQIDAYHFDLPVIAAPMDSVMSPESAIAFGQHGGLPVLDLEGLWTRYEDPAPLLAEIATLDPALATQRMQEIYRAEIQPELVTERLREIRAAGVTVAGALTPQRTQQLWKTVVDAGVDLFVIRGTTVSAEHVSGRAEPLNLKRFIYELDVPVIVGGAASYSAALHLMRTGAAGVLVGFGGGAAHTTRVTLGIHAPMASAIADVAAARRDYLDESGGRYVHVIADGGVGTSGDVVKAVACGADAVMLGAALARATDAPGRGYHWGAEAHHPELPRGHRVHVGAVAPLEEVLFGPSRVADGTTNLVGALRRAMATSGYLELKEFQRVEVVVAPYQRS
>NZ_CP053707.1|WP_173029785.1|3934915_3936496_-|succinate-semialdehyde-dehydrogenase-(NADP(+))
MPDVIVDPETDPRATYAVDPARVRALAARVVASGEPLTTHTPMTGAPLATFPTSTAADVTVAVARARAAQRRWAGVPVAQRARLLLALHDLVLERRTELLDLVQLESGKARSHAFEEVADVAIVCRHYARRGPGHLAPERHLGVFPLLTRSTEHHRAKGVVGIVSPWNYPLSLAVTDALPALLAGNAVVLRPDPQGTLTALAAVALMVEAGFPDDLVQVVLGPGETGRAVVAQADYVCFTGSTATGREVAAAAGRRLVGSSLELGGKNAVYVADDADLRRAVPGILRACFASAGQLCVSAERLVLHEAVADEFLGRFLEAVAGLRLSTALDWDADMGSLVGPAQLERVLGHVDDAVAKGATVLAGGRARPDVGPYVVEPTVLAGVTSAMACRDEETFGPVVSLYRVADDDAAVALANDTEYGLNASVWTRDVRRGRALAARIQAGTVNVNEGYAAAWGSIGSPMGGMKASGLGRRHGREGILKYTEAQNVTVQGLVNVADLPGLRGARYASALTGALRAMRAARLP
>NZ_CP053707.1|WP_173030293.1|3933137_3934859_-|GMC-family-oxidoreductase
MGSGFGGSVAALRAAEKGHRVLVLEAGRRFEDEDFARTSWDLRRFLWAPRLGCYGVQRIHRLPDVVVLAGAGVGGGSLNYANTLYRPPSAFYRDPQWRDLADWEAELAPHYDTASRMLGVVTNRCDGPVERAMLGAAEDLGVADTFRRTPVGVFFGKPGETVDDPYFGGAGPRRTGCTECGNCMVGCRVGAKNTLMKNYLALAERLGVEIRPLRTVTRLGPVPGSDAGDGEPLYRVLHERTGPVGGRDRQVVTARRVVVAAGTWGTQTLLHAMRDEGELPSLSARLGHLTRTNSEALVGAMTEHAPRDVDLTRGVAITTSFHVDADTHVENCRYGVGSNAMGLLATLGVPGGTGRPRWREFLAMVARDPRPLVRMLPTTRRWSERIVVGLVMQSRDNSIRVSLRRSLGRRRLTSQQGHGEPNPTYIPQGQRAMEALAGRIASATGEYTVAGGSWPEVLDVPMTAHFLGGVPIGGSPDSGVLDRYQRVWGHPGVSVLDGSAISANLGVNPSLTITAQAERAMAFWPGRGEPDARPTQAELLADPGRSRRHAVTVPPRPVRPFGSGADRTAGCSD
>NZ_CP053707.1|WP_173029784.1|3932853_3933045_-|hypothetical-protein
MPVQPPRRTTTPGAHGRLGPLGARLVVAIVATTAVSVLLVAAPAGAGDLPTAGPFVVHEAPSR
>NZ_CP053707.1|WP_173030292.1|3932463_3932772_-|DUF1905-domain-containing-protein
MADVVTDRAWTFEATLWRDGGWRFVTVPAQASDEVDAVVGDATGGFGSVRVRVQVGATTWLTSVFPSTAHAAYVLPVKKAVRAAEALDEGDTVRVVLRLEGR
>NZ_CP053707.1|WP_030528816.1|3944352_3944580_+|RNA-binding-S4-domain-containing-protein
MPDDALEVPIRDESIRLGQLLKLSGLVDDGATAREVVERGLVYVNGEVDTRRGRQVRVGDVVALDGGGSLRVTSA
>NZ_CP053707.1|WP_173029791.1|3944667_3946080_-|hypothetical-protein
MTWAGATWLAFRGGRSDRLRIVLTVASTAVAAVFVLLAGAVVTSPDPMSGTVYANVGLWTEPGLRGGTVFALALLCLPFLAFAAQCSRIGAPARERRFEDLARLGATRRELRRVIAIEGGLASVGGVVLGVPLYGLFALVVGTIGAPVAVGPDSVSAPTRTEWMADALLLPTDRVPTWWVALPGLVLLPLLVTVSASVGAARREGRVLHEGSTRRRVARSGALAASGLALGGLIIGLLRIAPALPNIVWPLLLLAAVVLLALGAAGLAGELAVLIGARLAVGAGRADLLLAGRRMEAQQRRGASRLTLLLGCLVGGAALVLRADTLAQMERQGDTGGFFAQTYTLVLVALGLATAASALGLLVAEVEGVVERRRSLATAVAAGVPRAVIARAVVVEAVLPVVPAVVVTTLVGALFARFFALAVSQDGAGLPAAALTLFILVVSLAATAAAVAATAALPASTDVSEARVPA
>NZ_CP053707.1|WP_173029792.1|3946076_3946802_-|ABC-transporter-ATP-binding-protein
MTPQPHATTDVEAPRPAVPRLAARGIVVHQGRTRALAGVDLDVAAGERVAITGASGSGKSTLLLALGGVLVPTEGNVALDGATVSHLAEAERARLRRTRFGIVFQYGQLVPDLTAVENVALPLLLLGRSRRDALEAARAVLAELRVDDVADRRPIDMSGGQSQRVAIARAVVTAPDVVLADEPTGSLDSVGGERVMATLLGSVRERGATLVVVTHDATVAAYCDREVRLRDGLVVGAGEGR
>NZ_CP053707.1|WP_173029793.1|3946798_3947332_-|helix-turn-helix-transcriptional-regulator
MTTGHVLLGLLSRGQQHGYDLKRAYDAAFPSARPIAAGQVYTALDRAAARGWVELAAVERDGGPDRRVYALTAAGRAELERWAGSTEPPDALLSHPLATRATVAMLALGPDAARSFLDRQRVAVVDRMRELTRTKTDPALTLGERLATDHAIAHLDADVRWLEAAADRVVDLTEEIR
>NZ_CP053707.1|WP_173029794.1|3947398_3948094_-|aspartate/glutamate-racemase-family-protein
MRLLGVLGGMSWTSTEAYYRGLNAGVAARLGGLHSARLLLHSVDFAPVAAAQHADDWPGTARLLADAARGLAAGGAQALLLATNTMHRVADEIEDAAGVPLLHIADPTADALLAGGHRRVGLLATRFTMEQAFYADRLRAHGLEVLVPGAEDRALVHRVIYDELVRDVVREGSRAAYREVVGRLVDAGAEAVVLGCTEIGLLLHDGDADVPLVDTTALHVAAGVDWLCATP
>NZ_CP053707.1|WP_173029795.1|3948196_3949813_-|chaperonin-GroEL
MAKELEFNDSARKALERGVDALANAVKVTLGPKGRNVVIDKKWGAPTITNDGVTIAREVELEDAYENLGAQLAKEVATKTNDVAGDGTTTATVLAQAMVKEGLRNVAAGAAPSGLKRGMDKAVDAVSERLLENAREIESKDEIAQVASLSAQDAEIGSTIADAFDKVGKDGVITVEESSTASTELEFTEGMQFDKGYISPYFVSDPERMEAVVEDAYVLINQGKISAIADVLPVLEKVVQSGKPLVIIAEDVDGEALSTLVVNKMRGTFNVVAVKAPGFGDRRKAMLQDMAVLTGGQVVAEEVGLKLDQVGLETLGQARRVVVTKDSTVIIDGGGDASDVDGRVAQIKQEIERTDSDWDREKLQERLAKLAGGVCVIKVGAHTEVELKEKKHRIEDAISATRAAIEEGIVSGGGSALIQAVAVLDTIGLEGDEAVGANIVRKAAAEPLRWIAENAGLQGYVAVAKVSELPAGQGLNAATGEYEDLVKAGVIDPVKVTRSALRNAASIASMVLTTDTLVVEKKEEEPAAAGGQGHGHGH
>NZ_CP053707.1|WP_173029797.1|3949939_3950233_-|co-chaperone-GroES
MSVSIKPLEDRIVIKSLEAEQTTASGLVIPDTAKEKPQEGEVLAVGPGRIDDKGNRVPLDVQVGDRVIYSKYGGTEIKHAGEEYLILSARDVLAVVG
>NZ_CP053707.1|WP_173029798.1|3950479_3951742_+|class-I-SAM-dependent-methyltransferase
MDVGIVRALGSPDGKELLRSLPAYDPAAVFGLQDRLRREGHAPDFVAAVLTQQRLRARAVAKFGEFADDLLYTPDGLEQASRLEVAATHAGRFYEASLATVHDLGCGIGSDAVAMSALGVTVQAVDIDPVTAAVADTNLRPWPDSRAHEGYAEEFEPPRDPLRSRVGVWLDPARRIPGQTGRHGRIKRVFRLDEIRPSWQFVLQVATAVPATGAKLSPSMPHDAIPLGTEAQWTSYAGEVLECAVWWGPLAHRPGRSARILAPGRSPVVVDETMAEPEPPTAEGTGSIGAWLYEPDRAVTQAGLLGAVTGATLGVEVDTGLGYVLSDAEVDLPYARRYAVLESMPFTVKTLRAWIKQHGVTGLTIKKRGVRLDDDELRRQLRIGRGAGDGAQATVVLTRVAGRQTAIVVEPAAPPAAPAG
>NZ_CP053707.1|WP_173029799.1|3951748_3953734_-|acyl-CoA-dehydrogenase-family-protein
MAATDAVRTADPTRRVPPALDADPAALRAVLDGPHAAVRDEVRAALAEHTDLLDEQRDLPRAELRRRVRDLVVEIGERGQAAHGFPRSVGGGGDIGASIAAFETLAYGDLSVVVKSGVQFGLFGGAVLQLGTRAHHERYLPDILSGRLLGCFAMTETGHGSNVQALGTTATYDPAADEIVVRTPDDASRKDYIGNAAEDGELAVVFAQLEVGGEAHGVHAVLVPIRRDGAVLPGVRVEDCGTKLGLEGVDNGRLWFDDVRVPRANLLDRFAQIDDDGTYRSSIENPNRRFFTMLGTLVQGRVSVGGGALAASKVALEIAVRYGLRRRQFEAPGTEEETLLLDYGMHQRRLLPLVARAYALSAAQQEVARQLHEVFSPDTPEAPERDVRALESRAAGQKALATWHATDAIQECREACGGAGYLSANRFAALKADTDVFTTFEGDNHVLLQLVAKGLLTDYSSSFEDLDQRGMVRFVAGLAVDTVVERTAAHQLLERIRDVLPGSREGADTDAGLLDPDYHLAMLRFREEHQVSGVARRLKAGVDAGRPPGEVFNDVQDHVIAAARSHVERLVVEAFVAQVRAQPPGPTREVLGALCDLHALVTIEADRGWFLEHGRLSAPRSKAITREVTGLLRRLRPVALELVEAFGIPPEVLGARDLVGP
>NZ_CP053707.1|WP_173029800.1|3953792_3954623_-|ribokinase
MTGRVLVLGSLNVDLVTRVESHPRPGETVLGEGLSRLAGGKGANQAVAAAAAGADVAMVGCVGDDDGGRAYRERLARLGVDVEGVRVVEGATSGHALIQVSDDGENSIVVVPGANDEVGAAEVGAIRTLGEGDVLVLQLEVPVPVVCEAARVAAGRGARVVLNVAPWSSLPADVIALGDPVVANELEMQALAEAGAEPASLLVTFGANGASWDGVTMPAHPVEGGAVDTTGAGDAFVGALAAALARGATREEALDAALAAGSAAVAREGAQPDPYL

Crispr_ID: NZ_CP053707_14

• CRISPR_ID: NZ_CP053707_14
• CRISPR_location: 4036709-4036805
• CRISPR_type: Unclear
• Repeat_type: NA
• Spacer_info: 1 spacers
• Cas_protein_info: cas3

Consensus repeat of NZ_CP053707_14

Consensus_repeat	Method
CCGGAGACGGTGCCGGGGCGGGAGGGATGCCTCGCG	CRISPRCasFinder

spacers of NZ_CP053707_14

>14.1|4036745|25|NZ_CP053707|CRISPRCasFinder
GTGCCGACCCAGCTCGCCGCGGCGT

CRISPR arrays and Neighbor proteins around NZ_CP053707_14

CRISPR arrays

The CRISPR arrays of NZ_CP053707_14

>merge|NZ_CP053707|14|4036709-4036805|CRISPRCasFinder
CCGGAGACGGTGCCGGGGCGGGAGGGATGCCTCGCGGTGCCGACCCAGCTCGCCGCGGCGTCCGGAGACGGTGCCGGGGCGGGAGGGATCCCTCGCG

>NZ_CP053707|14|11|4036709-4036805|CRISPRCasFinder
CCGGAGACGGTGCCGGGGCGGGAGGGATGCCTCGCG	GTGCCGACCCAGCTCGCCGCGGCGT
CCGGAGACGGTGCCGGGGCGGGAGGGATCCCTCGCG

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053707.1|WP_173029879.1|4044934_4045678_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP053707.1|WP_173029880.1|4045678_4046866_-|glycosyltransferase-family-4-protein	unknown	unknown	gnl|CDD|340831
NZ_CP053707.1|WP_173029876.1|4037792_4038341_-|hypothetical-protein	unknown	unknown	gnl|CDD|372652
NZ_CP053707.1|WP_173029875.1|4036842_4037796_-|MazG-family-protein	unknown	unknown	gnl|CDD|237065
NZ_CP053707.1|WP_173029866.1|4028643_4028946_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP053707.1|WP_173026459.1|4042321_4043995_+|hypothetical-protein	unknown	unknown	gnl|CDD|236940
NZ_CP053707.1|WP_173029865.1|4027407_4028631_+|acetyl-CoA-C-acetyltransferase	unknown	unknown	gnl|CDD|181146
NZ_CP053707.1|WP_173029878.1|4044120_4044879_+|phosphatase-PAP2-family-protein	unknown	unknown	gnl|CDD|239486
NZ_CP053707.1|WP_173029877.1|4038360_4041939_-|transcription-repair-coupling-factor	cas3	cd09639_cas3_CAS-I	gnl|CDD|224118
NZ_CP053707.1|WP_173029869.1|4030618_4031569_-|Ppx/GppA-family-phosphatase	unknown	unknown	gnl|CDD|223326
NZ_CP053707.1|WP_173029870.1|4031565_4032120_-|DUF501-domain-containing-protein	unknown	unknown	gnl|CDD|224424
NZ_CP053707.1|WP_173029872.1|4032754_4034044_-|phosphopyruvate-hydratase	unknown	unknown	gnl|CDD|234617
NZ_CP053707.1|WP_173029868.1|4030153_4030588_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP053707.1|WP_173029881.1|4047288_4048125_+|sulfotransferase-domain-containing-protein	unknown	unknown	gnl|CDD|366246
NZ_CP053707.1|WP_173029874.1|4035101_4036253_-|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl|CDD|238916
NZ_CP053707.1|WP_173029883.1|4049740_4051105_-|right-handed-parallel-beta-helix-repeat-containing-protein	unknown	unknown	gnl|CDD|368264
NZ_CP053707.1|WP_173029871.1|4032116_4032731_-|septum-formation-initiator-family-protein	unknown	unknown	gnl|CDD|368217
NZ_CP053707.1|WP_173029882.1|4048293_4049391_+|hypothetical-protein	unknown	unknown	gnl|CDD|367147
NZ_CP053707.1|WP_173029867.1|4028972_4029797_-|Bax-inhibitor-1/YccA-family-protein	unknown	unknown	gnl|CDD|378959
NZ_CP053707.1|WP_173029873.1|4034163_4035105_-|pseudouridine-5'-phosphate-glycosidase	unknown	unknown	gnl|CDD|377251

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_CP053707.1|WP_173029877.1|4038360_4041939_-|transcription-repair-coupling-factor	cas3	cd09639_cas3_CAS-I	4.5e-13	43.7	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP053707.1|WP_173029883.1|4049740_4051105_-|right-handed-parallel-beta-helix-repeat-containing-protein	gnl|CDD|368264	pfam05048, NosD, Periplasmic copper-binding protein (NosD). NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme (NosZ). This region forms a parallel beta helix domain.	8.53533e-05
NZ_CP053707.1|WP_173029876.1|4037792_4038341_-|hypothetical-protein	gnl|CDD|372652	pfam13624, SurA_N_3, SurA N-terminal domain. This domain is found at the N-terminus of the chaperone SurA. It is a helical domain of unknown function. The C-terminus of the SurA protein folds back and forms part of this domain also but is not included in the current alignment.	0.00356383
NZ_CP053707.1|WP_173029878.1|4044120_4044879_+|phosphatase-PAP2-family-protein	gnl|CDD|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	4.04175e-15
NZ_CP053707.1|WP_173026459.1|4042321_4043995_+|hypothetical-protein	gnl|CDD|236940	PRK11633, PRK11633, cell division protein DedD; Provisional.	2.23925e-11
NZ_CP053707.1|WP_173029865.1|4027407_4028631_+|acetyl-CoA-C-acetyltransferase	gnl|CDD|181146	PRK07851, PRK07851, acetyl-CoA C-acetyltransferase.	0
NZ_CP053707.1|WP_173029880.1|4045678_4046866_-|glycosyltransferase-family-4-protein	gnl|CDD|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	2.34526e-54
NZ_CP053707.1|WP_173029869.1|4030618_4031569_-|Ppx/GppA-family-phosphatase	gnl|CDD|223326	COG0248, GppA, Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism].	7.53166e-75
NZ_CP053707.1|WP_173029870.1|4031565_4032120_-|DUF501-domain-containing-protein	gnl|CDD|224424	COG1507, COG1507, Uncharacterized conserved protein [Function unknown].	3.41963e-59
NZ_CP053707.1|WP_173029872.1|4032754_4034044_-|phosphopyruvate-hydratase	gnl|CDD|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP053707.1|WP_173029875.1|4036842_4037796_-|MazG-family-protein	gnl|CDD|237065	PRK12334, PRK12334, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	2.13247e-61
NZ_CP053707.1|WP_173029881.1|4047288_4048125_+|sulfotransferase-domain-containing-protein	gnl|CDD|366246	pfam00685, Sulfotransfer_1, Sulfotransferase domain.	1.17762e-06
NZ_CP053707.1|WP_173029874.1|4035101_4036253_-|winged-helix-turn-helix-transcriptional-regulator	gnl|CDD|238916	cd01941, YeiC_kinase_like, YeiC-like sugar kinase. Found in eukaryotes and bacteria, YeiC-like kinase is part of the ribokinase/pfkB sugar kinase superfamily. Its oligomerization state is unknown at this time.	3.34628e-67
NZ_CP053707.1|WP_173029873.1|4034163_4035105_-|pseudouridine-5'-phosphate-glycosidase	gnl|CDD|377251	pfam04227, Indigoidine_A, Indigoidine synthase A like protein. Indigoidine is a blue pigment synthesized by Erwinia chrysanthemi implicated in pathogenicity and protection from oxidative stress. IdgA is involved in indigoidine biosynthesis, but its specific function is unknown. The recommended name for this protein is now pseudouridine-5'-phosphate glycosidase.	9.74859e-178
NZ_CP053707.1|WP_173029882.1|4048293_4049391_+|hypothetical-protein	gnl|CDD|367147	pfam02706, Wzz, Chain length determinant protein. This family includes proteins involved in lipopolysaccharide (lps) biosynthesis. This family comprises the whole length of chain length determinant protein (or wzz protein) that confers a modal distribution of chain length on the O-antigen component of lps. This region is also found as part of bacterial tyrosine kinases.	2.19248e-06
NZ_CP053707.1|WP_173029871.1|4032116_4032731_-|septum-formation-initiator-family-protein	gnl|CDD|368217	pfam04977, DivIC, Septum formation initiator. DivIC from B. subtilis is necessary for both vegetative and sporulation septum formation. These proteins are mainly composed of an amino terminal coiled-coil.	5.47209e-11
NZ_CP053707.1|WP_173029867.1|4028972_4029797_-|Bax-inhibitor-1/YccA-family-protein	gnl|CDD|378959	pfam12811, BaxI_1, Bax inhibitor 1 like. The Bax-inhibitor-1 region of the receptor molecules is conserved from bacteria to humans.	2.84826e-84
NZ_CP053707.1|WP_173029877.1|4038360_4041939_-|transcription-repair-coupling-factor	gnl|CDD|224118	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].	0

Protein sequences

>NZ_CP053707.1|WP_173029874.1|4035101_4036253_-|winged-helix-turn-helix-transcriptional-regulator
MALTEREREIVALLRTDPLLDAAALAERVGSTRAAVSVHLSNLTRKGVLLGRGYLLRAEASSVLVVGGAVLDAKVRTRVRPVLGTSNPGTFTATVGGVGRNIAEGLARLGSPTMLVAPVGDDLQGRTVVARTEAAGVDCRHVVTSPHPTGSYTAVLGDDGDLLVAVADMRATDELTVADLAVVPGLLGGVDRLVLDCNLQADVLRWLLTAAATAGIPALVETVSVAKATEAAPALDGSVPVHTVTPNVDELAAMLGRPVDPDPASVAAAAAVLHERGVEHVWVRRGAHGSLLSIARPGHPARVVLVSAPPTTVEDVTGAGDAMTAGYVHALLGGAEVVEAARFGQVVAALTCASPDTVRADLTPALVAAHLTPDAPSTEELSA
>NZ_CP053707.1|WP_173029873.1|4034163_4035105_-|pseudouridine-5'-phosphate-glycosidase
MSPSPVTPHPMLAVAPEVREALAAGRPVVALESTIISHGMPYPANVAMAREVEQIVRDGGAVPATIAVISGRPTVGLSDEELEMFGADGGIRKVSVRDIPHVVATGVHGATTVASTMRIAALAGIRTFVTGGLGGVHQGAETSMDVSADLTELSRTEVAVISAGVKSILDIGRTLEVLETLGVPVVGMGTDEFPSFFSRSSGIAVPMRVDTPEQVAELMHASFGLGLGVGISIANPVPAEHEMAHADIDDVIARALAECDEQGVTGKDITPFLLGRLVELSDGRSLETNLALVRHNARVGTAIAVAYAAGATA
>NZ_CP053707.1|WP_173029872.1|4032754_4034044_-|phosphopyruvate-hydratase
MASIEAVGAREILDSRGNPTVEVEVALDDGTVARAAVPSGASTGAFEAVERRDGDKGRYGGKGVEKAVDAVIDELGPKLLGFEASEQRLVDAEMLAIDGSANKEKVGANAILGVSLAVARAAAESADLPLFRYVGGPNAHVLPVPMMNILNGGSHADSNVDIQEFMIAPIGAESFREALRWGAEVYHALKGVLKEKGLATGLGDEGGFAPNLESNRAALDLILEAIEKAGYTPGTQIALALDVAASEFYADGSYTFEGGSKSADEMVDYYADLVASYPLVSIEDPLNEDDWDGWKAMTDRLGAQVQIVGDDLFVTNPERLDRGIKSGTANALLVKVNQIGSLTETLDAVDLAHRNGYRCMMSHRSGETEDVTIADLAVATNCGQIKTGAPARSERVAKYNQLLRIEEELDDAAVYAGASAFPRFAARQG
>NZ_CP053707.1|WP_173029871.1|4032116_4032731_-|septum-formation-initiator-family-protein
MATSRSTGPASRPPRRGSAARPAARSGSARTGARASSTRSSSAAPRPSTTGTTTAKVVRRTPTGWRSQVGGAMSNRMVRRTAVLASIAIFLVVLLTSSVAAWLHQQGQIAALRDKVSTQEADVAALREERQRWEDPAYVEQQARQRLKFVRPGERAYTVLDPEATKDSGPASTGPGAGEDTPALPWYDGVWQSVRTADAPGARR
>NZ_CP053707.1|WP_173029870.1|4031565_4032120_-|DUF501-domain-containing-protein
MTALPDLPPVAQEDLDAVSRQLGREARGVAAVGHRCPCGEPDVVRTEPRLPDGTPFPTSFYATCPRLTGAISTLESQGVMREMTDRLGTDDALRAGYEAAHADYLARRAELGDVPEVAGISAGGMPTRVKCLHVLVAHSLAAGPGVNPLGDEALELLDPWWERGSCAADAAAAAPASGADAGSA
>NZ_CP053707.1|WP_173029869.1|4030618_4031569_-|Ppx/GppA-family-phosphatase
MTRRVAAVDCGTNSIRLLVADVGEDGLLTDVVRRMEVVRLGQGIDRTGVIAPEAMERTLTAAAGYAATCRELGAQRVRFVATSASRDARNADDFVAGVREAFGDLDVAPEVVAGEVEARLSFTGATGDLRRLGVPGPYLVVDLGGGSTELVRGTDDVEAGRSVDIGCVRMTERHLAGDPPSAEQAEAARHDVRAALDLAEEAVDLRGLAAVVGLAGSITTVTAHALGLGGYDRDAIHLAEVPLATHRASCAELLSMPREQRAALPYMHPGRVDVIGAGALVWDEVLGRVADRSPGVRVVTSEHDILDGIALSVADA
>NZ_CP053707.1|WP_173029868.1|4030153_4030588_-|hypothetical-protein
MGDAEQDDAGRDGGRRLRPSLLLARLMAATSAVLTLALVAVAVLVPASSAVVVLAGAVVGLVGVVGCVILAAGLRRGDPAAALRGSAVGVLMLLAAAVLLAPAVVWLVAGVSEAFTTLGLSTVALPAVVAVVAVLAGPGLGRDG
>NZ_CP053707.1|WP_173029867.1|4028972_4029797_-|Bax-inhibitor-1/YccA-family-protein
MANNPAFNRLEQDARKGYAGFGSAPAPQQADPMSPQQLQDMYNAPSALRPGTDRAVTMDDVMMKTLGLFALVLVTGTAGWLIAAANPSVGALVWIGAMVATLVLGLVIAFKKTLSVPLIIGYALFEGLFVGAVSQFFDQRYPGIVVQAVLATVATFAGMLIAYKTGLIKVTAKFRRIMTMALIGYAIFALVNFVYAVATNTQFGIGGSGALGIGISLFAVGLAAFTLALDFDSIDYAIRTGAPQKYSWLLAHGLIVTLVWLYIEFLRLLGRFRN
>NZ_CP053707.1|WP_173029866.1|4028643_4028946_-|hypothetical-protein
MAHATPASSSQDVLAGAARTELERIRRRWSELPLTTAQAHAPQVRAVVERLAAATAPGAELPDLGPAVLLDQLAVVAWDAAAAGAADVTAELSALRRDLP
>NZ_CP053707.1|WP_173029865.1|4027407_4028631_+|acetyl-CoA-C-acetyltransferase
MTEAVIVATARTPIGRAFKGSLREVRPDDLSAQVVRGLLEQLPGLDPATLDDLYWGCADPSGKAGNNMARVIGVLAGLDGLPGATVNRFCASSTQTMRMAFHAVKAGEGDAFVVGGVESVSTNAAFRGAGESDPDALNPAFAEAMERSAAMAAANTTWSDPREQGGLPDVYLAMGQTAENVATLRGVSRERQDEWGVTSQNRAEKAIADGFFAREILPVTLADGSVVSSDDGPRAGVTLEGVQGLQPVFREGGTVTAGNCCPLNDGASGVVVMSDTRARELGLTPLARIVSTGVSALSPEIMGLGPVEASRQALARAGMTIDDMDLYEINEAFAAQVLPSADDLGMDFDKLNVHGGAIALGHPFGSTGTRIMTTLLNGLRARDGQFGLETMCVGGGQGMAIVVERLS
>NZ_CP053707.1|WP_173029875.1|4036842_4037796_-|MazG-family-protein
MSTGRLGLVLTSPRVAPGLLSHPAWAAVSAADVLLTRSADEPLAEAMTDAGLAVVEVGEHHPAELARALVDRAAAEVVVWLGSSDGDPGLSDALASEVSRLETPPEVELVVGSWDVQGGRLLDVVAAMDRLRSPGGCPWDAEQTHASLAPYLVEEAHEVLEAIDAGDPRALAEELGDVLLQVVFHARVAEDAGEDGFDVDTVAGLLVEKLVRRHPHVFADGDATTPEQVEQEWERIKAVEKESSGGGYAQDVLHGVPATLPVELAAAKLESRMRRRDLVADDAALAELEAARAALAEAEARARAALRAVADAARPTT
>NZ_CP053707.1|WP_173029876.1|4037792_4038341_-|hypothetical-protein
MTTPVRRVAAALALGAALVTAGCGTTEAGRAATVDGRVITENEVQVAQAQINKTFPGANLTSDQVLGRLIGAPVYLDEIAQQGVPVSESLARTAYQQQETYDGQAPADETLEVLRAQLAIQQLAQSGASVPSEALSKLKVEVNPRYGDFDASKLTEWDAVQSTAGLATSTPDWIKTVTTPQQ
>NZ_CP053707.1|WP_173029877.1|4038360_4041939_-|transcription-repair-coupling-factor
MPSLSVLRSRVVALPGTVRLAEALAVPSAEVTASAPPGARHAVLAALAPRPSGAPVLAVTATGREAEDLQTALAATLGPDAVGLFPSWETLPHERLSPRSDTVGQRLSVLRRLAHPEAEDSTHGRLAVVVAPVRAVLQPIAKGLGELRPVSLAAGEEVALERVVEDLAGAAYARVDLVERRGEFAVRGGILDVFPPTEEHPLRVEFWGDTVEEIRWFKVADQRSLEVAEHGLWAPPCRELLLTPSVRERAAVLADQLPGAADLLDKLANGIAVEGMESLAPALVEGMETLLEVLPADAVVVACDPERVRTRAHDLVATSEEFLQAGWATAAGGSAVPIDLESVLGTASFRTLAELREQARGLGVRWLDLTPFSGDEDDDTVELGLTVSPTFRGSTEDAVAELARLTGDGWSVLVVTEGAGLAKRVTEVLGEHEVRARAVPEAELEPGLVAVTTGCIGSGFLVAAERLAVVTEADLTGAAAGSGTSTKDMRRMPSKRRNQVDPLQLRPGDFVVHEQHGVGRFVEMVQRTVQGATREYLVLEYAASKRGQPADRLYVPTDQLDQVTRYVGGEQPTLNKMGGSDWQQTKGRARRYVKQIAAELIRLYSARMATKGHAFGPDTPWQRELEDAFAHVETPDQLSTIDEVKADMEREVPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLCPTTLLVQQHLNTFAERYAGFPVVVKGLSRFQTDADAKAVLAGLADGSVDLVIGTHRLLSKEVRFKDLGLVVVDEEQRFGVEHKEQLKALRTSVDVLAMSATPIPRTLEMAVTGIREMSTLATPPEERHPVLTYVGGYDEKTVTAAIRRELLREGQVFLVHNKVSTIEKSAARIRELVPEARVATAHGKMGEQKLEQVVVDFWEKRFDVLVCTTIVETGLDISNANTLIVERADRLGLSQLHQLRGRVGRGRERAYSYFLYPPETPLTETALDRLQTIASNTDLGSGMQVAMKDLEIRGAGNLLGGEQSGHIAGVGFDLYVRLVGEAVASFRGEGEEAPAEIKIELPVDAHLPHDYVPHERLRLEMYKKLAAVVDEQQLAEIEGELVDRYGPVPVPVRNLLEVARLRTVARAAGIADISVQGQHVRFGPVELRESQQLRLNRLYPKSILKAATGSVLVPAPKTAVVGGRPLRDQAVLDWASQVIRAVVMDNVAQAAQAATAPSRG
>NZ_CP053707.1|WP_173026459.1|4042321_4043995_+|hypothetical-protein
MGTAMSPCRRSAATTIGSLAVLATLGVAVAGSAAARPISNPGASRQSTTTTVVSVEDSAAPTSRAALSYVGTWKQADTAAYAGTHYTGQKGSRIEISFTGSQLVLYGPRGRYFGEASVSVDGGRATTVDAYRTNLLTQTVLYAGDKLAQGRHTAIVTVLGTKNAQSGGTAWALDRLDVVSTSVTAPAPSQPTPPPPTPTPTPTPTPTPTPTPTPTPTPPPPPVPTPTPTPTPPPPPAPAPATKANYGGLYGATSTDRLRRGVNQQWLKVRWADLEPQEGVYNWAPISTLLASDPTLVVRVHVMGGQYAPTWLKTAAGSVNVTNAKDGITASVGQYWTPRYTAAYERFVSALGAKFDGNARVASVNMFGTSLIYDEPWITGGAASGAALFSAGLTKDKVIASQNAGLAATVKAFPNTVVEMPLHGQFTYPVAGGQKGTWADGIGLANAWDAQYGSRVIFTDYGWGAGDWTAAASSLSTAPNLYSWMHKRADLGRPIAFQATLAPGVAAGSVKPTADVARSATDEAVRMGARWFEHAAWGYFTVEEAAAFDAGLKANVQ
>NZ_CP053707.1|WP_173029878.1|4044120_4044879_+|phosphatase-PAP2-family-protein
MHTTQTPQRGLAGLRWVAGLRTAVVWLAGVTVLSIAVGFVAKSLTTLVDHPVFDAVERAGTNDWTDVLSTLTKMGNVWQTQRLAAVLAVGLAVWLWRRGQRWWMPLVVLPLTWIVSRVMQFGVAWIVDRDRDAISLLGTNVGAFPSGGVMRIVTVTGAAVFLASYYGRWERGRTLAGYAVVFALGVAEAYFRGRLNQHWFTDIIGGIIVGWAFLAAVAATVRAFDPSPRSTTPAADDTTHTSPVPAAPEPTR
>NZ_CP053707.1|WP_173029879.1|4044934_4045678_-|hypothetical-protein
MANGPNGIRRVVHRARRAVLERTARQGTEPVDLDSLISPLRYDVVVRARLFDLLAQEPDLGGDALVRRAAGTAYADWFVHVECARFFPELLQDKAVRDERFAARVHGAARLLRSFEERGFDAASPVTLLTAPAGTASESGAPALGGLHIGDGCHRVSLLLRAGATLEPWMYKVRPSLGPLVDNTAVLLRHGALDEQEYVAFLAARFPVGGARTVQEALATVEAVDAGAAPTLRAVTDAQRPGGPGRA
>NZ_CP053707.1|WP_173029880.1|4045678_4046866_-|glycosyltransferase-family-4-protein
MAMVGQKGVPATFGGIEHHVEELGARLAEQGVEVTVYCRRSYAAQVPPEHRGMRLVVTPTVASKHLDAIVHSITSTVHAVLARADVVHYHAPGPGLAAPLARYLSPSRVVLTVHGLDHERAKWAGLARRVLGLAYWMSGHVPDAVVTVSRALAERYGHDFGRSATYIPNGVAQANPGEPLGRLASDLGLEPGRYVLFVGRMVPEKRPDLLVEAAAMLPEGVRMVLVGDSSFSDEYVADLRRAAAADDRVVLPGYLYGRELSAVYANAAVYVQPSDVEGLPLTLLEALSYGVPVVASDIPPHLEVLSGCTCGGHRTFPAGDATALGRQLAAVLGADGVDTGRVATDSAALLAPYDWDVAADQLHTLYRGLAGDRSDGGARGIPAGPDPVRTDVAAG
>NZ_CP053707.1|WP_173029881.1|4047288_4048125_+|sulfotransferase-domain-containing-protein
MPATPLRKQVAHALAPLRPMPRAGSRMRPDYLVVGTKRGGSTSFADWLEQHPDVAPCLARKGTHYFDTNFRRGRAWYASRFEKTSAGFRVTGEASPYYMFHPLAPERIKAELPGVKLIAVLREPVDRLLSHYRYEVERGHESESLERALDLEESRLAGEVERLREDVTYEGYPYRHWSYLHRGHYAEQIAHLHTLFDPQDVLVLQSEQMFADPNGTLALAWRFLGLEPVHLDHLVPLNATATRPDVADATLQRLRDYYAPRNEALYALPGVDWRWPDA
>NZ_CP053707.1|WP_173029882.1|4048293_4049391_+|hypothetical-protein
MEIADYLKVARRRLWILILVPLLAAGAALAYGLLSPRTYSSTATVLTPSLVGAQYSQFTGPQAIDQFVSAFAASAADPTVIAQTAKETGISTEALTDNVDVAQVGASSNVTLTYSGESEKASQPVAHALAKNALVNIYSAQRKIAGMQAEAARRGVDAANKAVNDYVTKAGVGEPSAAYTAAVSQVTWLQQTQATYAASGDKSAANAIRSSIETAQKQSREIGATLPQYNTLVNAQTLANEAYQSALGDQRKVQVQATAASDPDVITTTVASPDRTGVSIVQLVVPVFGASVLFAIIVIALFEFVAAVRRQENTEEHAPEVASSTEVDAEPAPVAGRSGRHSKATAAPADRHEDSTERTPSMVDA
>NZ_CP053707.1|WP_173029883.1|4049740_4051105_-|right-handed-parallel-beta-helix-repeat-containing-protein
MPKTSVKTAAVLACTTTLALAATTLTSTPASAAPAGSTTLAAVAAATPASTGVRPALPTGTTRTVTVSTTSQLKSAISAATPGTAILLHKGSYVGPFDILRSGTSTNPISVQPYGDGAVTLTASLAMPSCGTTGPDINRTVRFRQAASYWAFQNLNISGGVYIPGAGVQHAYAWMQKSIKNSDWRTLRAVPGRGTNDKVAARNAISYVAAKAGATLKPIDGIQLVGNTITRKGVHITMSRYGVIKDNTITDIACGTGPGIWFGTYSDGWTVTGNTLARVAASTVKHYMQEGIRVDNGSNYNVIDRNRISDLPGDGRAFTTDQTASYNRFTNNTASNVAIGFNDQMAGWGNLWDHNTVTGYRSAGIAFRMMDAPLKTPSMATSTNDSTVTCNSLSGTGAGLQIGAMMKSRVANNKIASTKLGPNVPSYWVAQGNTFNGKAAVPTTGATAIPSGAC

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP053707_9	9.1|2235372|38|NZ_CP053707|CRISPRCasFinder	2235372-2235409	38	NZ_CP053707.1	715675-715712	1	0.974
NZ_CP053707_9	9.1|2235372|38|NZ_CP053707|CRISPRCasFinder	2235372-2235409	38	NZ_CP053707.1	3059100-3059137	1	0.974
NZ_CP053707_9	9.1|2235372|38|NZ_CP053707|CRISPRCasFinder	2235372-2235409	38	NZ_CP053707.1	1792086-1792123	2	0.947

1. spacer 9.1|2235372|38|NZ_CP053707|CRISPRCasFinder matches to position: 715675-715712, mismatch: 1, identity: 0.974

ccgcgcctcaccccggaaccgttcccgggtgaggcgca	CRISPR spacer
ccgcgcctcaccccggaaccgttccggggtgaggcgca	Protospacer
************************* ************

2. spacer 9.1|2235372|38|NZ_CP053707|CRISPRCasFinder matches to position: 3059100-3059137, mismatch: 1, identity: 0.974

ccgcgcctcaccccggaaccgttcccgggtgaggcgca	CRISPR spacer
ccgcgcctcaccccggaaccgttccggggtgaggcgca	Protospacer
************************* ************

3. spacer 9.1|2235372|38|NZ_CP053707|CRISPRCasFinder matches to position: 1792086-1792123, mismatch: 2, identity: 0.947

ccgcgcctcaccccggaaccgttcccgggtgaggcgca	CRISPR spacer
ccgcgcttcaccccggaacggttcccgggtgaggcgca	Protospacer
******.************ ******************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP053707_14	14.1|4036745|25|NZ_CP053707|CRISPRCasFinder	4036745-4036769	25	NC_015314	Pseudonocardia dioxanivorans CB1190 plasmid pPSED01, complete sequence	164041-164065	3	0.88
NZ_CP053707_14	14.1|4036745|25|NZ_CP053707|CRISPRCasFinder	4036745-4036769	25	NC_016585	Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence	865351-865375	3	0.88
NZ_CP053707_14	14.1|4036745|25|NZ_CP053707|CRISPRCasFinder	4036745-4036769	25	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	1030043-1030067	3	0.88
NZ_CP053707_14	14.1|4036745|25|NZ_CP053707|CRISPRCasFinder	4036745-4036769	25	NC_007336	Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence	521458-521482	3	0.88
NZ_CP053707_14	14.1|4036745|25|NZ_CP053707|CRISPRCasFinder	4036745-4036769	25	NZ_CP022366	Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence	98015-98039	3	0.88
NZ_CP053707_14	14.1|4036745|25|NZ_CP053707|CRISPRCasFinder	4036745-4036769	25	NC_008308	Sphingomonas sp. KA1 plasmid pCAR3 DNA, complete sequence	118138-118162	3	0.88
NZ_CP053707_14	14.1|4036745|25|NZ_CP053707|CRISPRCasFinder	4036745-4036769	25	NZ_CP022369	Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence	118904-118928	4	0.84
NZ_CP053707_14	14.1|4036745|25|NZ_CP053707|CRISPRCasFinder	4036745-4036769	25	NZ_CP048423	Sphingomonas insulae strain KCTC 12872 plasmid unnamed4, complete sequence	30821-30845	4	0.84
NZ_CP053707_14	14.1|4036745|25|NZ_CP053707|CRISPRCasFinder	4036745-4036769	25	NZ_AP014705	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence	434274-434298	4	0.84
NZ_CP053707_14	14.1|4036745|25|NZ_CP053707|CRISPRCasFinder	4036745-4036769	25	NC_011892	Methylobacterium nodulans ORS 2060 plasmid pMNOD01, complete sequence	1626-1650	4	0.84
NZ_CP053707_14	14.1|4036745|25|NZ_CP053707|CRISPRCasFinder	4036745-4036769	25	NZ_CP032349	Azospirillum brasilense strain MTCC4039 plasmid p3, complete sequence	512700-512724	4	0.84
NZ_CP053707_1	1.1|273445|27|NZ_CP053707|CRISPRCasFinder	273445-273471	27	NC_013852	Allochromatium vinosum DSM 180 plasmid pALVIN01, complete sequence	12063-12089	5	0.815
NZ_CP053707_9	9.2|2235434|30|NZ_CP053707|CRISPRCasFinder	2235434-2235463	30	NC_009475	Bradyrhizobium sp. BTAi1 plasmid pBBta01, complete sequence	33616-33645	5	0.833
NZ_CP053707_14	14.1|4036745|25|NZ_CP053707|CRISPRCasFinder	4036745-4036769	25	NZ_CP011665	Streptomyces sp. Mg1 plasmid pSMg1-1, complete sequence	163137-163161	5	0.8
NZ_CP053707_14	14.1|4036745|25|NZ_CP053707|CRISPRCasFinder	4036745-4036769	25	NZ_CP033582	Streptomyces sp. ADI95-16 plasmid pADI95-16a, complete sequence	525563-525587	5	0.8
NZ_CP053707_1	1.1|273445|27|NZ_CP053707|CRISPRCasFinder	273445-273471	27	NZ_AP022578	Mycolicibacterium aubagnense strain JCM 15296 plasmid pJCM15296, complete sequence	104600-104626	6	0.778
NZ_CP053707_2	2.1|382483|31|NZ_CP053707|CRT	382483-382513	31	NZ_CP013855	Pseudonocardia sp. HH130630-07 plasmid pLS2-1, complete sequence	166328-166358	7	0.774
NZ_CP053707_9	9.2|2235434|30|NZ_CP053707|CRISPRCasFinder	2235434-2235463	30	NZ_CP024582	Roseomonas sp. FDAARGOS_362 plasmid unnamed1, complete sequence	170956-170985	7	0.767
NZ_CP053707_9	9.2|2235434|30|NZ_CP053707|CRISPRCasFinder	2235434-2235463	30	NZ_CP032346	Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence	61975-62004	7	0.767
NZ_CP053707_9	9.2|2235434|30|NZ_CP053707|CRISPRCasFinder	2235434-2235463	30	NZ_CP025188	Roseomonas mucosa strain AD2 plasmid p1-AD2, complete sequence	234481-234510	7	0.767
NZ_CP053707_2	2.1|382483|31|NZ_CP053707|CRT	382483-382513	31	NZ_CP016083	Streptomyces sp. SAT1 plasmid unnamed3, complete sequence	85567-85597	8	0.742
NZ_CP053707_9	9.2|2235434|30|NZ_CP053707|CRISPRCasFinder	2235434-2235463	30	NZ_CP017563	Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence	671753-671782	8	0.733
NZ_CP053707_2	2.1|382483|31|NZ_CP053707|CRT	382483-382513	31	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	1020980-1021010	9	0.71
NZ_CP053707_2	2.1|382483|31|NZ_CP053707|CRT	382483-382513	31	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	1111396-1111426	9	0.71
NZ_CP053707_2	2.3|382577|31|NZ_CP053707|CRT	382577-382607	31	NC_009956	Dinoroseobacter shibae DFL 12 = DSM 16493 plasmid pDSHI02, complete sequence	83717-83747	9	0.71
NZ_CP053707_2	2.3|382577|31|NZ_CP053707|CRT	382577-382607	31	NZ_CP035496	Xylanimonas allomyrinae strain 2JSPR-7 plasmid unnamed1, complete sequence	17456-17486	9	0.71
NZ_CP053707_5	5.1|687772|30|NZ_CP053707|CRISPRCasFinder	687772-687801	30	NC_014007	Sphingobium japonicum UT26S plasmid pCHQ1, complete sequence	144649-144678	9	0.7
NZ_CP053707_11	11.1|2890998|35|NZ_CP053707|CRISPRCasFinder	2890998-2891032	35	NZ_CP024310	Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence	62279-62313	9	0.743
NZ_CP053707_11	11.1|2890998|35|NZ_CP053707|CRISPRCasFinder	2890998-2891032	35	NZ_CP023064	Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence	65842-65876	9	0.743
NZ_CP053707_2	2.1|382483|31|NZ_CP053707|CRT	382483-382513	31	NZ_CP034351	Streptomyces sp. W1SF4 plasmid p1, complete sequence	27552-27582	10	0.677
NZ_CP053707_10	10.1|2564027|34|NZ_CP053707|CRISPRCasFinder	2564027-2564060	34	NZ_CP042630	Escherichia coli strain NCYU-25-82 plasmid pNCYU-25-82-3, complete sequence	25774-25807	10	0.706

1. spacer 14.1|4036745|25|NZ_CP053707|CRISPRCasFinder matches to NC_015314 (Pseudonocardia dioxanivorans CB1190 plasmid pPSED01, complete sequence) position: , mismatch: 3, identity: 0.88

gtgccgacccagctcgccgcggcgt	CRISPR spacer
gtgctgacccagctcgccgcggtct	Protospacer
****.*****************. *

2. spacer 14.1|4036745|25|NZ_CP053707|CRISPRCasFinder matches to NC_016585 (Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence) position: , mismatch: 3, identity: 0.88

gtgccgacccagctcgccgcggcgt	CRISPR spacer
gtgccgacccagctggcggcggcgg	Protospacer
************** ** ****** 

3. spacer 14.1|4036745|25|NZ_CP053707|CRISPRCasFinder matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 3, identity: 0.88

gtgccgacccagctcgccgcggcgt	CRISPR spacer
ctggcgagccagctcgccgcggcgt	Protospacer
 ** *** *****************

4. spacer 14.1|4036745|25|NZ_CP053707|CRISPRCasFinder matches to NC_007336 (Cupriavidus pinatubonensis JMP134 megaplasmid, complete sequence) position: , mismatch: 3, identity: 0.88

gtgccgacccagctcgccgcggcgt	CRISPR spacer
gtgcaaacccagctcgccgcggcgc	Protospacer
**** .******************.

5. spacer 14.1|4036745|25|NZ_CP053707|CRISPRCasFinder matches to NZ_CP022366 (Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence) position: , mismatch: 3, identity: 0.88

gtgccgacccagctcgccgcggcgt	CRISPR spacer
gcgccgatccagctcgccgcggtgt	Protospacer
*.*****.**************.**

6. spacer 14.1|4036745|25|NZ_CP053707|CRISPRCasFinder matches to NC_008308 (Sphingomonas sp. KA1 plasmid pCAR3 DNA, complete sequence) position: , mismatch: 3, identity: 0.88

gtgccgacccagctcgccgcggcgt	CRISPR spacer
gcgccgacccggctcgccgcgccgt	Protospacer
*.********.********** ***

7. spacer 14.1|4036745|25|NZ_CP053707|CRISPRCasFinder matches to NZ_CP022369 (Azospirillum sp. TSH58 plasmid TSH58_p05, complete sequence) position: , mismatch: 4, identity: 0.84

gtgccgacccagctcgccgcggcgt	CRISPR spacer
ctgcagacccagctcgcggcggcga	Protospacer
 *** ************ ****** 

8. spacer 14.1|4036745|25|NZ_CP053707|CRISPRCasFinder matches to NZ_CP048423 (Sphingomonas insulae strain KCTC 12872 plasmid unnamed4, complete sequence) position: , mismatch: 4, identity: 0.84

gtgccgacccagctcgccgcggcgt	CRISPR spacer
gtgcggacccagctcgccacggccg	Protospacer
**** *************.****  

9. spacer 14.1|4036745|25|NZ_CP053707|CRISPRCasFinder matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 4, identity: 0.84

gtgccgacccagctcgccgcggcgt	CRISPR spacer
atgctgacccagctcgccgcggtgg	Protospacer
.***.*****************.* 

10. spacer 14.1|4036745|25|NZ_CP053707|CRISPRCasFinder matches to NC_011892 (Methylobacterium nodulans ORS 2060 plasmid pMNOD01, complete sequence) position: , mismatch: 4, identity: 0.84

gtgccgacccagctcgccgcggcgt	CRISPR spacer
ctgccgaccctgctcgccgccgcgg	Protospacer
 ********* ********* *** 

11. spacer 14.1|4036745|25|NZ_CP053707|CRISPRCasFinder matches to NZ_CP032349 (Azospirillum brasilense strain MTCC4039 plasmid p3, complete sequence) position: , mismatch: 4, identity: 0.84

gtgccgacccagctcgccgcggcgt	CRISPR spacer
ctgcagacccagctcgcggcggcga	Protospacer
 *** ************ ****** 

12. spacer 1.1|273445|27|NZ_CP053707|CRISPRCasFinder matches to NC_013852 (Allochromatium vinosum DSM 180 plasmid pALVIN01, complete sequence) position: , mismatch: 5, identity: 0.815

gttggtgcacgcaccaccgaccccgga	CRISPR spacer
gtcggtgcacgcaccaccgccccggcc	Protospacer
**.**************** *** *  

13. spacer 9.2|2235434|30|NZ_CP053707|CRISPRCasFinder matches to NC_009475 (Bradyrhizobium sp. BTAi1 plasmid pBBta01, complete sequence) position: , mismatch: 5, identity: 0.833

atgat-gtccggatgcgtcgcgcggccgcga	CRISPR spacer
-tgccggtccgcatgcgtcacgcggccgcga	Protospacer
 ** . ***** *******.***********

14. spacer 14.1|4036745|25|NZ_CP053707|CRISPRCasFinder matches to NZ_CP011665 (Streptomyces sp. Mg1 plasmid pSMg1-1, complete sequence) position: , mismatch: 5, identity: 0.8

gtgccgacccagctcgccgcggcgt	CRISPR spacer
ctgcggacccagctcgccgcggtcc	Protospacer
 *** *****************. .

15. spacer 14.1|4036745|25|NZ_CP053707|CRISPRCasFinder matches to NZ_CP033582 (Streptomyces sp. ADI95-16 plasmid pADI95-16a, complete sequence) position: , mismatch: 5, identity: 0.8

gtgccgacccagctcgccgcggcgt	CRISPR spacer
ctgcggacccagctcgccgcggtcc	Protospacer
 *** *****************. .

16. spacer 1.1|273445|27|NZ_CP053707|CRISPRCasFinder matches to NZ_AP022578 (Mycolicibacterium aubagnense strain JCM 15296 plasmid pJCM15296, complete sequence) position: , mismatch: 6, identity: 0.778

gttggtgcacgcaccaccgaccccgga	CRISPR spacer
cgcggtgcccgcgccaccgaccccggc	Protospacer
  .***** ***.************* 

17. spacer 2.1|382483|31|NZ_CP053707|CRT matches to NZ_CP013855 (Pseudonocardia sp. HH130630-07 plasmid pLS2-1, complete sequence) position: , mismatch: 7, identity: 0.774

atgcacaccccgccccgcccgaccgtgcaga---	CRISPR spacer
atgcacaccccgccgcgccagac---gccggtct	Protospacer
************** **** ***   ** *.   

18. spacer 9.2|2235434|30|NZ_CP053707|CRISPRCasFinder matches to NZ_CP024582 (Roseomonas sp. FDAARGOS_362 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

atgatgtccggatgcgtcgcgcggccgcga	CRISPR spacer
aaggactgaggatgcgccgcgcggccgcga	Protospacer
* *.  *  *******.*************

19. spacer 9.2|2235434|30|NZ_CP053707|CRISPRCasFinder matches to NZ_CP032346 (Azospirillum brasilense strain MTCC4039 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.767

atgatg-tccggatgcgtcgcgcggccgcga	CRISPR spacer
-cggcgctccggaggcgtcgcgcggcagcgc	Protospacer
 .*..* ****** ************ *** 

20. spacer 9.2|2235434|30|NZ_CP053707|CRISPRCasFinder matches to NZ_CP025188 (Roseomonas mucosa strain AD2 plasmid p1-AD2, complete sequence) position: , mismatch: 7, identity: 0.767

atgatgtccggatgcgtcgcgcggccgcga	CRISPR spacer
aaggactgaggatgcgccgcgcggccgcga	Protospacer
* *.  *  *******.*************

21. spacer 2.1|382483|31|NZ_CP053707|CRT matches to NZ_CP016083 (Streptomyces sp. SAT1 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.742

atgcacaccccgccccgcccgaccgtgcaga	CRISPR spacer
gcccacaccccgccccgcccggccggtccgg	Protospacer
.. ******************.***  * *.

22. spacer 9.2|2235434|30|NZ_CP053707|CRISPRCasFinder matches to NZ_CP017563 (Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence) position: , mismatch: 8, identity: 0.733

atgatgtccggatgcgtcgcgcggccgcga	CRISPR spacer
gccaggtgccgatgcgtcgcgcggccgccg	Protospacer
.. * ** * ****************** .

23. spacer 2.1|382483|31|NZ_CP053707|CRT matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.71

atgcacaccccgccccgcccgaccgtgcaga	CRISPR spacer
ccccggcgccagccccgccggaccgtgcaga	Protospacer
 . *.   ** ******** ***********

24. spacer 2.1|382483|31|NZ_CP053707|CRT matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 9, identity: 0.71

atgcacaccccgccccgcccgaccgtgcaga	CRISPR spacer
ccccggcgccagccccgccggaccgtgcaga	Protospacer
 . *.   ** ******** ***********

25. spacer 2.3|382577|31|NZ_CP053707|CRT matches to NC_009956 (Dinoroseobacter shibae DFL 12 = DSM 16493 plasmid pDSHI02, complete sequence) position: , mismatch: 9, identity: 0.71

ctgcacactccgccccgcccgaccgtgcaca	CRISPR spacer
cgaggatttccgccccgcccgcccgtgcact	Protospacer
* . .  .************* ******** 

26. spacer 2.3|382577|31|NZ_CP053707|CRT matches to NZ_CP035496 (Xylanimonas allomyrinae strain 2JSPR-7 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.71

ctgcacactccgccccgcccgaccgtgcaca	CRISPR spacer
agccacactccgccccgcccgagcgccagcc	Protospacer
   ******************* **.  .* 

27. spacer 5.1|687772|30|NZ_CP053707|CRISPRCasFinder matches to NC_014007 (Sphingobium japonicum UT26S plasmid pCHQ1, complete sequence) position: , mismatch: 9, identity: 0.7

aagtcgtcgaaagcggcgattggcgcacgc	CRISPR spacer
tgagggtcgaaagcggcggttggcggacat	Protospacer
 ..  *************.****** **..

28. spacer 11.1|2890998|35|NZ_CP053707|CRISPRCasFinder matches to NZ_CP024310 (Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence) position: , mismatch: 9, identity: 0.743

-----ctccggggcgtccggcagatggtggtcggggcggt	CRISPR spacer
gacgaatccgg-----ccggcagatggtgttcggggcgac	Protospacer
      *****     ************* ********..

29. spacer 11.1|2890998|35|NZ_CP053707|CRISPRCasFinder matches to NZ_CP023064 (Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence) position: , mismatch: 9, identity: 0.743

-----ctccggggcgtccggcagatggtggtcggggcggt	CRISPR spacer
gacgaatccgg-----ccggcagatggtgttcggggcgac	Protospacer
      *****     ************* ********..

30. spacer 2.1|382483|31|NZ_CP053707|CRT matches to NZ_CP034351 (Streptomyces sp. W1SF4 plasmid p1, complete sequence) position: , mismatch: 10, identity: 0.677

atgcacaccccgccccgcccgaccgtgcaga	CRISPR spacer
gacatcaccccgcccggcccgtccgtgcttt	Protospacer
.    ********** ***** ******   

31. spacer 10.1|2564027|34|NZ_CP053707|CRISPRCasFinder matches to NZ_CP042630 (Escherichia coli strain NCYU-25-82 plasmid pNCYU-25-82-3, complete sequence) position: , mismatch: 10, identity: 0.706

ctcttcacctcgaaccaccccgtgggtggcggga	CRISPR spacer
ttgccggcctcgaccaaccccgtgggtggcgcgt	Protospacer
.* .. .****** * *************** *