CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
NZ_CP053710	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed2, complete sequence	0 crisprs	DEDDh	0	0	9
NZ_CP053709	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence	1 crisprs	DEDDh	0	15	5
NZ_CP053714	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed7, complete sequence	0 crisprs	NA	0	0	0
NZ_CP053712	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed5, complete sequence	0 crisprs	RT	0	0	2
NZ_CP053715	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed8, complete sequence	0 crisprs	NA	0	0	0
NZ_CP053713	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed6, complete sequence	0 crisprs	NA	0	0	0
NZ_CP053708	Acetobacteraceae bacterium strain PAMC 26569 chromosome, complete genome	2 crisprs	DEDDh,csa3,DinG,cas3	1	0	4
NZ_CP053711	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed4, complete sequence	0 crisprs	NA	0	0	1

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 37680

Enterobacteria_phage(18.18%)

transposase,integrase

attL 674:690|attR 44176:44192

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_171835733.1\|556_1171_-	hypothetical protein	NA	NA	NA	NA
674:690	attL	NA	NA	NA	NA
WP_171835732.1\|1167_2046_-	hypothetical protein	NA	NA	NA	NA
WP_171835731.1\|2045_2762_-	AAA family ATPase	NA	NA	NA	NA
WP_171835730.1\|2825_3368_-	hypothetical protein	NA	NA	NA	NA
WP_171835749.1\|3771_4893_+\|integrase	site-specific integrase	Q5QBN6	Enterobacteria_phage	2.4e-16	28.8
WP_171835729.1\|6206_7277_+	AAA family ATPase	F0PIG8	Enterococcus_phage	7.3e-15	29.5
WP_171835728.1\|7306_8179_+	ParB/RepB/Spo0J family partition protein	S5VSZ7	Leptospira_phage	1.3e-06	35.1
WP_171835727.1\|9135_10104_+	plasmid replication initiator	NA	NA	NA	NA
WP_171835726.1\|10177_10390_-	hypothetical protein	NA	NA	NA	NA
WP_171835725.1\|11095_11386_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_172443579.1\|11422_11797_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	U5P429	Shigella_phage	7.1e-26	51.3
WP_171837916.1\|11968_13042_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_171837795.1\|13067_13250_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_171837794.1\|13171_13543_-	recombinase family protein	A0A1S6L009	Salmonella_phage	2.3e-21	59.1
WP_171837793.1\|13539_13767_-	hypothetical protein	NA	NA	NA	NA
WP_171837792.1\|14029_15184_-	hypothetical protein	NA	NA	NA	NA
WP_171837791.1\|15501_16182_-	WHG domain-containing protein	NA	NA	NA	NA
WP_171837790.1\|16199_16655_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_171837927.1\|16868_17738_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	5.3e-40	35.7
WP_171837926.1\|17665_18016_-\|transposase	transposase	NA	NA	NA	NA
WP_171837824.1\|18095_18425_+	hypothetical protein	NA	NA	NA	NA
WP_171837823.1\|18797_20132_+	hypothetical protein	NA	NA	NA	NA
WP_171837822.1\|20557_20707_+	hypothetical protein	NA	NA	NA	NA
WP_171837821.1\|20787_21114_+	hypothetical protein	NA	NA	NA	NA
WP_171837820.1\|21360_21732_+	hypothetical protein	NA	NA	NA	NA
WP_171837819.1\|21728_22178_+	hypothetical protein	NA	NA	NA	NA
WP_171837818.1\|22177_22570_+	hypothetical protein	NA	NA	NA	NA
WP_171837826.1\|24695_25664_+	DUF1738 domain-containing protein	A0A1B1IWW8	uncultured_Mediterranean_phage	4.8e-34	36.1
WP_171837817.1\|25740_26118_+	hypothetical protein	NA	NA	NA	NA
WP_171837816.1\|26144_26693_+	hypothetical protein	NA	NA	NA	NA
WP_171837815.1\|26708_27158_-	hypothetical protein	NA	NA	NA	NA
WP_171837814.1\|27610_28081_+	single-stranded DNA-binding protein	A0A0U2C0X4	Paracoccus_phage	5.8e-41	55.1
WP_171837813.1\|28052_28442_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_171837812.1\|28653_28851_+	hypothetical protein	NA	NA	NA	NA
WP_171837811.1\|28850_29072_+	hypothetical protein	NA	NA	NA	NA
WP_172443563.1\|29236_29512_+	hypothetical protein	NA	NA	NA	NA
WP_171837809.1\|29513_30629_+	zeta toxin family protein	NA	NA	NA	NA
WP_171837808.1\|30698_30917_+	hypothetical protein	NA	NA	NA	NA
WP_171837807.1\|31462_32449_+	DUF3991 domain-containing protein	NA	NA	NA	NA
WP_171837806.1\|32445_32751_+	hypothetical protein	NA	NA	NA	NA
WP_171837391.1\|33042_34575_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	3.3e-117	44.3
WP_171837390.1\|34586_35354_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	3.2e-57	47.5
WP_171835381.1\|36693_37680_+\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	4.9e-42	35.9
44176:44192	attR	NA	NA	NA	NA

DBSCAN-SWA_2

41362 : 42310

Acanthocystis_turfacea_Chlorella_virus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_171835375.1\|41362_42310_-	phosphoglycerate dehydrogenase	M1GWB3	Acanthocystis_turfacea_Chlorella_virus	6.4e-23	26.7

DBSCAN-SWA_3

45738 : 53875

Staphylococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_171835370.1\|45738_47316_+	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	3.0e-17	30.9
WP_171835369.1\|47316_48312_+	ABC transporter permease	NA	NA	NA	NA
WP_171835380.1\|48323_49871_+	pentose kinase	NA	NA	NA	NA
WP_171835368.1\|49886_50672_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	3.6e-19	31.5
WP_171835367.1\|50684_50936_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_171835366.1\|51821_52772_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_171835365.1\|52864_53875_+	zinc-binding dehydrogenase	K7Z7U2	Megavirus	9.6e-09	24.1

DBSCAN-SWA_4

60036 : 226048

149

Mycobacterium_phage(11.11%)

transposase,integrase

attL 182241:182256|attR 216184:216199

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_171835358.1\|60036_60777_+	glucose 1-dehydrogenase	A0A0N9R355	Chrysochromulina_ericina_virus	5.8e-11	25.8
WP_171835357.1\|60904_62137_-	MFS transporter	NA	NA	NA	NA
WP_171835356.1\|62382_63060_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	2.6e-34	41.9
WP_172443506.1\|63051_64199_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	7.7e-63	47.5
WP_172443580.1\|64897_65737_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	2.9e-51	44.4
WP_171836567.1\|67242_68670_+	DUF4331 family protein	NA	NA	NA	NA
WP_171836566.1\|68699_69980_+	hypothetical protein	NA	NA	NA	NA
WP_171836565.1\|69976_71122_+	HupE/UreJ family protein	NA	NA	NA	NA
WP_171836564.1\|72896_73373_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA
WP_171836563.1\|73692_73926_+	hypothetical protein	F5B3X9	Synechococcus_phage	3.0e-06	47.9
WP_171836562.1\|75268_76063_-	sulfotransferase family 2 domain-containing protein	NA	NA	NA	NA
WP_171836561.1\|76450_76636_+	hypothetical protein	NA	NA	NA	NA
WP_171836560.1\|76958_77468_-	ProQ/FinO family protein	NA	NA	NA	NA
WP_171836559.1\|77596_77965_-	hypothetical protein	NA	NA	NA	NA
WP_171837778.1\|78420_79155_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.0e-60	49.4
WP_172443514.1\|79165_80686_-\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	3.6e-124	47.2
WP_172443564.1\|80976_81411_-	hypothetical protein	NA	NA	NA	NA
WP_172443565.1\|81407_81548_-	hypothetical protein	NA	NA	NA	NA
WP_171837289.1\|81662_83186_+\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	4.6e-23	27.5
WP_171837288.1\|83175_83955_+	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	9.0e-31	34.9
WP_171837788.1\|85024_85762_-	DJ-1/PfpI family protein	NA	NA	NA	NA
WP_171837789.1\|86274_87177_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_171837787.1\|87293_87752_+	SRPBCC family protein	NA	NA	NA	NA
WP_171837786.1\|87865_89473_-	MFS transporter	NA	NA	NA	NA
WP_171837785.1\|89469_90675_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_171837784.1\|90860_91772_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_171837783.1\|92358_93738_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_171837782.1\|94168_95641_-	mechanosensitive ion channel	NA	NA	NA	NA
WP_172443566.1\|95880_96780_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	4.8e-44	37.7
WP_171837288.1\|96859_97639_-	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	9.0e-31	34.9
WP_171837289.1\|97628_99152_-\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	4.6e-23	27.5
WP_171837860.1\|99784_100594_+	SDR family NAD(P)-dependent oxidoreductase	F2NZ12	Diadromus_pulchellus_ascovirus	1.0e-05	29.6
WP_171837663.1\|100703_101738_-\|transposase	IS630 family transposase	S5VXX4	Leptospira_phage	1.5e-81	45.5
WP_171837949.1\|103656_105108_+	MFS transporter	A0A0M3UL24	Mycobacterium_phage	9.5e-34	30.4
WP_171837597.1\|106014_106593_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_171837574.1\|107561_109298_+	ubiquinone-dependent pyruvate dehydrogenase	G8DDL3	Micromonas_pusilla_virus	9.0e-31	24.2
WP_171837575.1\|109596_109974_-	response regulator	NA	NA	NA	NA
WP_171837576.1\|109970_110732_-	response regulator	NA	NA	NA	NA
WP_171837577.1\|110877_111714_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_171837578.1\|111754_112219_-	DNA starvation/stationary phase protection protein	A0A0A7RTZ1	Clostridium_phage	7.0e-15	32.1
WP_171837579.1\|112301_113312_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_171837580.1\|113410_114256_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
WP_171837581.1\|114328_115138_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_171837582.1\|115580_117662_+	PAS domain S-box protein	A0A1V0SGX0	Hokovirus	4.1e-06	28.7
WP_171837583.1\|117836_118265_+	OsmC family peroxiredoxin	NA	NA	NA	NA
WP_171837584.1\|118361_119240_+	hypothetical protein	NA	NA	NA	NA
WP_171837585.1\|119584_119971_+	tautomerase family protein	NA	NA	NA	NA
WP_171837586.1\|120257_121124_+	hypothetical protein	NA	NA	NA	NA
WP_171837587.1\|121120_121738_+	hypothetical protein	NA	NA	NA	NA
WP_171837588.1\|121734_122094_+	hypothetical protein	NA	NA	NA	NA
WP_171837589.1\|122154_122682_+	hypothetical protein	NA	NA	NA	NA
WP_172443567.1\|122753_123356_-	UPF0149 family protein	NA	NA	NA	NA
WP_172443568.1\|123352_124900_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.3e-93	41.4
WP_171837598.1\|124942_125239_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_171837592.1\|125310_125778_-\|transposase	transposase	NA	NA	NA	NA
WP_171837593.1\|125854_126319_+	hypothetical protein	NA	NA	NA	NA
WP_171837594.1\|127240_127990_+	glucose 1-dehydrogenase	Q06VL0	Trichoplusia_ni_ascovirus	1.1e-14	31.5
WP_171837595.1\|128518_129490_+\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	2.1e-45	37.0
WP_171837596.1\|129726_130005_-	hypothetical protein	NA	NA	NA	NA
WP_172443485.1\|130844_131954_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_172443569.1\|133639_134731_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_171837391.1\|134909_136442_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	3.3e-117	44.3
WP_171837390.1\|136453_137221_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	3.2e-57	47.5
WP_171837660.1\|138850_139225_-	hypothetical protein	NA	NA	NA	NA
WP_171837659.1\|139221_139773_-	hypothetical protein	NA	NA	NA	NA
WP_171837658.1\|139772_139970_-	hypothetical protein	NA	NA	NA	NA
WP_171837657.1\|140205_140403_-	hypothetical protein	NA	NA	NA	NA
WP_171837656.1\|140399_140567_-	hypothetical protein	NA	NA	NA	NA
WP_171837655.1\|140568_140976_-	hypothetical protein	NA	NA	NA	NA
WP_171837654.1\|141053_141302_+	transcriptional regulator	NA	NA	NA	NA
WP_171837652.1\|141488_141686_+	hypothetical protein	NA	NA	NA	NA
WP_171837653.1\|141728_142037_+	hypothetical protein	NA	NA	NA	NA
WP_172443581.1\|142211_142978_-\|transposase	IS5 family transposase	A0A0M5M147	Mycobacterium_phage	1.8e-23	32.6
WP_172443506.1\|143072_144219_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	7.7e-63	47.5
WP_171834383.1\|145097_145448_-	hypothetical protein	NA	NA	NA	NA
WP_171834384.1\|145469_145727_+	hypothetical protein	NA	NA	NA	NA
WP_171834389.1\|146069_147071_+	amidohydrolase family protein	NA	NA	NA	NA
WP_171834385.1\|147149_147302_-	hypothetical protein	NA	NA	NA	NA
WP_171834386.1\|147466_148264_+\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	1.2e-22	38.6
WP_171834387.1\|148449_148968_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	1.0e-51	64.2
WP_171834388.1\|151631_152186_+\|transposase	IS5 family transposase	A0A0M5M147	Mycobacterium_phage	1.2e-16	35.5
WP_172443570.1\|152289_154479_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	2.4e-12	34.1
WP_171835762.1\|155367_155712_-	hypothetical protein	NA	NA	NA	NA
WP_171835763.1\|156254_156422_+	hypothetical protein	NA	NA	NA	NA
WP_171835764.1\|156686_158621_-	DEAD/DEAH box helicase family protein	NA	NA	NA	NA
WP_171835765.1\|158744_159014_-	HU family DNA-binding protein	NA	NA	NA	NA
WP_171835766.1\|159231_159540_-	hypothetical protein	NA	NA	NA	NA
WP_172443571.1\|159825_160533_-	3'-5' exonuclease	A0A0K1LLS9	Caulobacter_phage	2.7e-42	41.2
WP_171837935.1\|160532_160991_-	hypothetical protein	NA	NA	NA	NA
WP_172443572.1\|160990_161713_-	DUF2786 domain-containing protein	A0A219VHD3	Ochrobactrum_phage	9.3e-06	28.4
WP_171837946.1\|161747_162173_-	MucR family transcriptional regulator	A0A1P8VVG0	Erythrobacter_phage	7.3e-19	47.7
WP_171837945.1\|162663_162927_-	type II toxin-antitoxin system CcdA family antitoxin	NA	NA	NA	NA
WP_171837606.1\|163158_164472_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_171837605.1\|164701_165238_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_171837604.1\|165325_165628_-	hypothetical protein	NA	NA	NA	NA
WP_171837603.1\|165853_166465_-	hypothetical protein	NA	NA	NA	NA
WP_171837602.1\|167664_168033_-	hypothetical protein	NA	NA	NA	NA
WP_171837601.1\|168047_170384_-	DotA/TraY family protein	NA	NA	NA	NA
WP_171837600.1\|170439_170973_-	hypothetical protein	NA	NA	NA	NA
WP_171837599.1\|171963_172251_+	hypothetical protein	NA	NA	NA	NA
WP_172443573.1\|174031_174833_+\|transposase	IS5 family transposase	A0A0M5M147	Mycobacterium_phage	9.0e-26	33.0
WP_171837288.1\|174992_175772_+	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	9.0e-31	34.9
WP_171837119.1\|178197_178983_-	DUF2382 domain-containing protein	NA	NA	NA	NA
WP_171837120.1\|179064_179235_-	CsbD family protein	NA	NA	NA	NA
WP_171837121.1\|179416_181273_-	PAS domain S-box protein	NA	NA	NA	NA
WP_171837122.1\|181445_181880_+	DUF2382 domain-containing protein	NA	NA	NA	NA
WP_171837123.1\|182207_183002_+	DUF2382 domain-containing protein	NA	NA	NA	NA
182241:182256	attL	NA	NA	NA	NA
WP_171837124.1\|183099_183483_+	hypothetical protein	NA	NA	NA	NA
WP_171837125.1\|183523_184141_+	hypothetical protein	NA	NA	NA	NA
WP_171837145.1\|184436_185408_+\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	2.7e-40	35.2
WP_171837126.1\|185624_186410_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_171837127.1\|187388_187778_-\|transposase	transposase	A0A1B0YZU7	Pseudomonas_phage	3.2e-05	43.6
WP_172443582.1\|187995_188550_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_171837129.1\|188628_189600_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_171837130.1\|189767_189905_+	hypothetical protein	NA	NA	NA	NA
WP_171837131.1\|189936_190257_+\|transposase	transposase	NA	NA	NA	NA
WP_171837132.1\|190269_190512_+	hypothetical protein	NA	NA	NA	NA
WP_171837133.1\|191275_194047_+	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	3.9e-28	24.3
WP_171837134.1\|195009_195183_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_171837118.1\|195133_195403_-	hypothetical protein	NA	NA	NA	NA
WP_171837135.1\|196053_196686_-	hypothetical protein	NA	NA	NA	NA
WP_171837136.1\|196988_197198_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_171837137.1\|197330_197720_+	hypothetical protein	NA	NA	NA	NA
WP_171837138.1\|197721_197889_+	hypothetical protein	NA	NA	NA	NA
WP_171837139.1\|197885_198083_+	hypothetical protein	NA	NA	NA	NA
WP_171837140.1\|198344_199286_-\|transposase	IS5 family transposase	E5E3P6	Burkholderia_phage	2.1e-18	28.0
WP_171837141.1\|199494_199731_+	hypothetical protein	NA	NA	NA	NA
WP_171837143.1\|200252_203093_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.6e-13	38.9
WP_171837144.1\|205164_206463_+\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_172443529.1\|206508_207501_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_172443574.1\|207621_208379_-\|transposase	IS5 family transposase	A0A0N9SJT9	Paenibacillus_phage	2.3e-07	34.4
WP_171837297.1\|208519_209725_+\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_172443575.1\|209986_210979_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_171837726.1\|211448_211640_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_171837727.1\|211634_211997_-\|transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	4.6e-06	34.4
WP_171837728.1\|212195_212507_-	TolC family protein	NA	NA	NA	NA
WP_171837729.1\|212591_213563_-\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	1.9e-46	37.1
WP_171837730.1\|213691_213832_+	hypothetical protein	NA	NA	NA	NA
WP_171837731.1\|215336_215843_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_171837735.1\|216000_218337_-	arginine decarboxylase	NA	NA	NA	NA
216184:216199	attR	NA	NA	NA	NA
WP_171837736.1\|218407_219574_-	outer membrane beta-barrel protein	NA	NA	NA	NA
WP_171837732.1\|220269_221760_+	amino acid permease	NA	NA	NA	NA
WP_171837733.1\|221802_222384_+	pyruvoyl-dependent arginine decarboxylase	NA	NA	NA	NA
WP_171837734.1\|222398_223298_+	N-carbamoylputrescine amidase	A7IVZ1	Paramecium_bursaria_Chlorella_virus	1.8e-75	49.0
WP_171837737.1\|223284_224430_+	agmatine deiminase	M1H3B1	Paramecium_bursaria_Chlorella_virus	2.1e-89	47.2
WP_172443520.1\|224481_225283_+\|transposase	IS5 family transposase	A0A0M5M147	Mycobacterium_phage	9.0e-26	33.0
WP_172443576.1\|225245_225440_-	hypothetical protein	NA	NA	NA	NA
WP_171834373.1\|225468_225750_+	ammonium transporter	NA	NA	NA	NA
WP_171834372.1\|225865_226048_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_5

232652 : 241465

Bandra_megavirus(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_171834380.1\|232652_233636_+	zinc-binding alcohol dehydrogenase family protein	A0A2K9V7Y5	Bandra_megavirus	3.7e-21	33.0
WP_171834368.1\|233723_234800_+	PAS domain-containing protein	NA	NA	NA	NA
WP_171834367.1\|235466_236954_+	FAD-binding protein	A0A2P0ZL82	Lactobacillus_phage	4.1e-24	26.9
WP_171834366.1\|236953_237886_+	FAD-dependent oxidoreductase	G3MA85	Bacillus_virus	1.2e-18	27.3
WP_171834365.1\|237938_238424_-	CBS domain-containing protein	NA	NA	NA	NA
WP_171834364.1\|238695_239118_-	response regulator	NA	NA	NA	NA
WP_171834363.1\|239212_241465_-	response regulator	A0A1V0SGX0	Hokovirus	1.4e-20	24.9

DBSCAN-SWA_6

249319 : 253436

Megavirus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_171834356.1\|249319_251215_-	molecular chaperone DnaK	A0A2P1EIW2	Megavirus	4.4e-148	51.6
WP_171834378.1\|251468_252119_+	BON domain-containing protein	NA	NA	NA	NA
WP_171834355.1\|252401_253436_-	alcohol dehydrogenase AdhP	A0A2K9L339	Tupanvirus	3.4e-33	26.9

DBSCAN-SWA_7

262122 : 263058

Salmonella_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_171834346.1\|262122_263058_-	AEC family transporter	A0A0U2C0Y4	Salmonella_phage	1.1e-11	39.2

DBSCAN-SWA_8

272132 : 272960

Tupanvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_171834377.1\|272132_272960_-	slipin family protein	A0A2K9KZA2	Tupanvirus	2.4e-29	32.4

DBSCAN-SWA_9

282630 : 337769

Stx2-converting_phage(22.22%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_171834337.1\|282630_283431_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_171834336.1\|283945_284188_-	co-chaperone GroES	A0A221S4G8	uncultured_virus	1.5e-13	49.4
WP_171834375.1\|284425_285136_-	triose-phosphate isomerase	NA	NA	NA	NA
WP_171834335.1\|285295_285688_-	hypothetical protein	NA	NA	NA	NA
WP_171834334.1\|285742_286534_-	PRC-barrel domain-containing protein	NA	NA	NA	NA
WP_171834333.1\|286636_288292_-	alpha-D-glucose phosphate-specific phosphoglucomutase	A0A1X9I671	Streptococcus_phage	4.1e-17	24.7
WP_171834332.1\|288288_296799_-	glycosyl transferase	NA	NA	NA	NA
WP_171834331.1\|296803_297013_-	hypothetical protein	NA	NA	NA	NA
WP_171834330.1\|297228_297408_+	hypothetical protein	NA	NA	NA	NA
WP_171834328.1\|299267_299528_-	hypothetical protein	NA	NA	NA	NA
WP_171834327.1\|299536_300151_-	histidine phosphatase family protein	NA	NA	NA	NA
WP_171834326.1\|300153_301248_-	fructose-bisphosphate aldolase class I	A0A0K0KVJ8	Prochlorococcus_phage	2.8e-70	47.9
WP_171834325.1\|301244_303668_-	phosphoketolase	NA	NA	NA	NA
WP_171834324.1\|303800_304655_-	glucokinase	NA	NA	NA	NA
WP_171834323.1\|304651_304852_-	glucokinase	NA	NA	NA	NA
WP_171834322.1\|305111_305858_-	triose-phosphate isomerase	NA	NA	NA	NA
WP_171834329.1\|305868_306180_-	SHOCT domain-containing protein	NA	NA	NA	NA
WP_171834321.1\|306598_307306_+\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	1.3e-23	38.8
WP_171834320.1\|307805_309155_-	MFS transporter	NA	NA	NA	NA
WP_171834319.1\|309151_309766_-	AAA family ATPase	NA	NA	NA	NA
WP_171834318.1\|311273_311579_-	hypothetical protein	NA	NA	NA	NA
WP_171837839.1\|312556_312808_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_171837838.1\|312807_313158_-\|transposase	transposase	NA	NA	NA	NA
WP_171837837.1\|313162_313402_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_171837834.1\|314469_314655_+	hypothetical protein	NA	NA	NA	NA
WP_171837836.1\|314654_315833_+	acetate/propionate family kinase	NA	NA	NA	NA
WP_171837835.1\|315986_316799_+	PRC-barrel domain-containing protein	NA	NA	NA	NA
WP_171837086.1\|317598_319242_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.4e-112	44.7
WP_171837087.1\|319302_319650_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	3.7e-29	55.1
WP_172443548.1\|319646_320057_-\|transposase	transposase	NA	NA	NA	NA
WP_171837383.1\|320665_321151_-	RpiB/LacA/LacB family sugar-phosphate isomerase	NA	NA	NA	NA
WP_171837384.1\|321248_325628_-	response regulator	A0A1V0SGX0	Hokovirus	5.6e-21	25.6
WP_171837385.1\|325903_326308_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_171837386.1\|327602_327950_+\|transposase	transposase	NA	NA	NA	NA
WP_171837387.1\|328690_329782_-	cation diffusion facilitator family transporter	NA	NA	NA	NA
WP_171837388.1\|329871_331023_-	alcohol dehydrogenase catalytic domain-containing protein	M1PHA2	Moumouvirus	1.3e-54	36.6
WP_172443577.1\|331281_332084_-\|transposase	IS5 family transposase	A0A0M5M147	Mycobacterium_phage	9.0e-26	33.0
WP_171837568.1\|332843_333131_+\|transposase	transposase	NA	NA	NA	NA
WP_171837569.1\|333218_334283_-	AI-2E family transporter	NA	NA	NA	NA
WP_171837570.1\|334279_334744_-	hypothetical protein	NA	NA	NA	NA
WP_171837571.1\|334814_335246_-	hypothetical protein	NA	NA	NA	NA
WP_171835747.1\|336749_337769_+\|transposase	IS481 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP053708

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP053708_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053708_1

1005146-1005247

Orphan

Consensus_repeat	Method
AGTTCGATGACCAACGGCACGGTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP053708_1

>merge|NZ_CP053708|1|1005146-1005247|CRISPRCasFinder
GGCTCGATGACCAATGGCACCGTCAGTTCGATGACCAACGGCACGGTCAGCAAGATGTCGGGCGGTTCGGCATCGGGAAGCTCGATGACCAACGGCACGGTC

>NZ_CP053708|1|1|1005146-1005247|CRISPRCasFinder
GGCTCGATGACCAATGGCACCGTC	AGTTCGATGACCAACGGCACGGTCAGCAAGATGTCGGGCGGTTCGGCATCGGGA
AGCTCGATGACCAACGGCACGGTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053708.1\|WP_171834942.1\|1007443_1008715_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
NZ_CP053708.1\|WP_171834400.1\|1013271_1013481_-\|TOBE-domain-containing-protein	unknown	unknown	gnl\|CDD\|226113
NZ_CP053708.1\|WP_172443456.1\|1002063_1003211_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP053708.1\|WP_171837528.1\|994297_994489_-\|Flp-family-type-IVb-pilin	unknown	unknown	gnl\|CDD\|368212
NZ_CP053708.1\|WP_171834395.1\|1005615_1005861_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226602
NZ_CP053708.1\|WP_171837516.1\|995264_995954_-\|response-regulator	unknown	unknown	gnl\|CDD\|223816
NZ_CP053708.1\|WP_171837518.1\|998786_999527_-\|winged-helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|223816
NZ_CP053708.1\|WP_171834941.1\|1006680_1007058_+\|winged-helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NZ_CP053708.1\|WP_171834393.1\|1004020_1004587_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|171551
NZ_CP053708.1\|WP_171834398.1\|1010095_1011283_+\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|180404
NZ_CP053708.1\|WP_171834401.1\|1013520_1014345_+\|sulfotransferase	unknown	unknown	gnl\|CDD\|379204
NZ_CP053708.1\|WP_171837519.1\|1000167_1001157_-\|zinc-binding-dehydrogenase	unknown	unknown	gnl\|CDD\|176229
NZ_CP053708.1\|WP_171834397.1\|1008711_1009944_+\|alpha-hydroxy-acid-oxidizing-protein	unknown	unknown	gnl\|CDD\|376451
NZ_CP053708.1\|WP_171834396.1\|1005820_1006636_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187602
NZ_CP053708.1\|WP_171834392.1\|1003361_1004006_-\|DUF1109-family-protein	unknown	unknown	gnl\|CDD\|377671
NZ_CP053708.1\|WP_171837515.1\|994627_995263_-\|lytic-transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|381603
NZ_CP053708.1\|WP_171834399.1\|1012328_1013267_-\|glutathione-S-transferase-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|223512
NZ_CP053708.1\|WP_171837520.1\|1001252_1001888_+\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_CP053708.1\|WP_171837517.1\|996118_997966_-\|response-regulator	unknown	unknown	gnl\|CDD\|237425
NZ_CP053708.1\|WP_171834943.1\|1011530_1012298_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212491

Protein	Function_ID	Function_description	E-value
NZ_CP053708.1\|WP_171834942.1\|1007443_1008715_+\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.88161e-86
NZ_CP053708.1\|WP_171834400.1\|1013271_1013481_-\|TOBE-domain-containing-protein	gnl\|CDD\|226113	COG3585, MopI, Molybdopterin-binding protein [Coenzyme metabolism].	9.57896e-19
NZ_CP053708.1\|WP_172443456.1\|1002063_1003211_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	4.61863e-76
NZ_CP053708.1\|WP_171837528.1\|994297_994489_-\|Flp-family-type-IVb-pilin	gnl\|CDD\|368212	pfam04964, Flp_Fap, Flp/Fap pilin component.	2.82746e-08
NZ_CP053708.1\|WP_171834395.1\|1005615_1005861_+\|hypothetical-protein	gnl\|CDD\|226602	COG4117, COG4117, Thiosulfate reductase cytochrome B subunit (membrane anchoring protein) [Energy production and conversion].	1.39419e-08
NZ_CP053708.1\|WP_171837516.1\|995264_995954_-\|response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	7.68902e-52
NZ_CP053708.1\|WP_171837518.1\|998786_999527_-\|winged-helix-turn-helix-domain-containing-protein	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.65833e-47
NZ_CP053708.1\|WP_171834941.1\|1006680_1007058_+\|winged-helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	4.18928e-27
NZ_CP053708.1\|WP_171834393.1\|1004020_1004587_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|171551	PRK12512, PRK12512, RNA polymerase sigma factor; Provisional.	5.11311e-54
NZ_CP053708.1\|WP_171834398.1\|1010095_1011283_+\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|180404	PRK06108, PRK06108, pyridoxal phosphate-dependent aminotransferase.	0
NZ_CP053708.1\|WP_171834401.1\|1013520_1014345_+\|sulfotransferase	gnl\|CDD\|379204	pfam13469, Sulfotransfer_3, Sulfotransferase family.	2.52773e-10
NZ_CP053708.1\|WP_171837519.1\|1000167_1001157_-\|zinc-binding-dehydrogenase	gnl\|CDD\|176229	cd08268, MDR2, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	2.72395e-163
NZ_CP053708.1\|WP_171834397.1\|1008711_1009944_+\|alpha-hydroxy-acid-oxidizing-protein	gnl\|CDD\|376451	pfam01070, FMN_dh, FMN-dependent dehydrogenase.	5.84672e-135
NZ_CP053708.1\|WP_171834396.1\|1005820_1006636_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187602	cd05344, BKR_like_SDR_like, putative beta-ketoacyl acyl carrier protein [ACP] reductase (BKR)-like, SDR. This subgroup resembles the SDR family, but does not have a perfect match to the NAD-binding motif or the catalytic tetrad characteristic of the SDRs. It includes the SDRs, Q9HYA2 from Pseudomonas aeruginosa PAO1 and APE0912 from Aeropyrum pernix K1. BKR catalyzes the NADPH-dependent reduction of ACP in the first reductive step of de novo fatty acid synthesis (FAS). FAS consists of four elongation steps, which are repeated to extend the fatty acid chain through the addition of two-carbo units from malonyl acyl-carrier protein (ACP): condensation, reduction, dehydration, and a final reduction. Type II FAS, typical of plants and many bacteria, maintains these activities on discrete polypeptides, while type I FAS utilizes one or two multifunctional polypeptides. BKR resembles enoyl reductase, which catalyzes the second reduction step in FAS. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	7.32008e-69
NZ_CP053708.1\|WP_171834392.1\|1003361_1004006_-\|DUF1109-family-protein	gnl\|CDD\|377671	pfam06532, DUF1109, Protein of unknown function (DUF1109). This family consists of several hypothetical bacterial proteins of unknown function.	5.30686e-22
NZ_CP053708.1\|WP_171837515.1\|994627_995263_-\|lytic-transglycosylase-domain-containing-protein	gnl\|CDD\|381603	cd13400, LT_IagB-like, Escherichia coli invasion protein IagB and similar proteins. Lytic transglycosylase-like protein, similar to Escherichia coli invasion protein IagB. IagB is encoded within a pathogenicity island in Salmonella enterica and has been shown to degrade polymeric peptidoglycan. IagB-like invasion proteins are implicated in the invasion of eukaryotic host cells by bacteria. Lytic transglycosylase (LT) catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Members of this family resemble the soluble and insoluble membrane-bound LTs in bacteria and the LTs in bacteriophage lambda.	1.55634e-10
NZ_CP053708.1\|WP_171834399.1\|1012328_1013267_-\|glutathione-S-transferase-C-terminal-domain-containing-protein	gnl\|CDD\|223512	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP053708.1\|WP_171837520.1\|1001252_1001888_+\|TetR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	2.38695e-11
NZ_CP053708.1\|WP_171837517.1\|996118_997966_-\|response-regulator	gnl\|CDD\|237425	PRK13557, PRK13557, histidine kinase; Provisional.	2.18465e-95
NZ_CP053708.1\|WP_171834943.1\|1011530_1012298_+\|SDR-family-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.32381e-62

>NZ_CP053708.1|WP_171834393.1|1004020_1004587_-|sigma-70-family-RNA-polymerase-sigma-factor
MTVREDHWAAAMRAERRGDAAAYEVLLREIAVMLRRLIRSRLARAGLGVEETEDVVQEILIGLHGKRHTWDAARPFMPWLFTITRYKFIDASRRLSREAKRRVNLTMEEMTEIFEAPIEDPDRTLSDIDRYLADLPQGQRQVVRALGVDGATVRATAEQLQTSEGSVRVSYHRALRRLMAKSQRENAP
>NZ_CP053708.1|WP_171834392.1|1003361_1004006_-|DUF1109-family-protein
MVSTLNTNDLIGSLARQAGSGRVAGPRGFNTVLIVAALCSFTISVALVLAVFGVGPDFAAGHHAPLIYKIVSMLMLSAGGLLLASRAALPGSGRLTLMALLPAAVLLAFRAATDQSGLSVLGAETISVPGCILAILIASVVPLTILIGVLRLGASTRPALAGAIAGMLAGALGAAAYSLACKNDGGMFVAIWYPLAVLLVAALGAVIARRALAW
>NZ_CP053708.1|WP_172443456.1|1002063_1003211_+|IS3-family-transposase
MVRRQFSREFKLKAVRLVKERGVSVVQVSRDLDVGENILRRWIKELTADPGQAFPGHGQVKPEQQEIDRLRREVAKLKAERDILKKGRGLLREGVVVKFGFIAKHRGIWPVRWLCEALDVSRSGFHAWLSRSPSARARGDEVLGAQIKASFVGSDRTYGARRVWHDVLAEGAACGLHRVERLMREHALRARPRRRGLPSDKGTRHEAADNVLDRQFDATTPNQKWIADFTYLWTAEGWLYVAAVIDLFSRRVVGWSMSATMTAQLVADALMMAIWRRGKPNALLHHSDQGSQYSSEQFQKLLVDHGVTCSMSRSGNVWDNAAMESFFSSLKTERTARKVYRTRDQARADVFDYIERFYNPRRRHSTIGYLSPMEFERIKASA
>NZ_CP053708.1|WP_171837520.1|1001252_1001888_+|TetR-family-transcriptional-regulator
MAAETVPRRAAGRPREFDANVALDKAVRLFWRHGYEATSMADLVAALGVGAPSLYAAFGNKAQLFAKALERYAATFSVTLYGVIDDPSLTTQATVGKLFDQAARQFSEPGTPGGCFMYSAAAAVSPTSGAIEALLRGKRAEFETRLATRLVQGISRGDLSANIDPIATAKYLNCILQGMSLQARDGAKYADLKSMAQRALASWTRAPRDDT
>NZ_CP053708.1|WP_171837519.1|1000167_1001157_-|zinc-binding-dehydrogenase
MSRVVRIHGYGDASVLQIDDIEVPAPANDEVQISVKAIGINRAEVMFRNHAYLQEAVFPSRLGYEAAGIVKAVGASVTGVNIGDVVSVIPALDIAHWGTYGELANVPARLVVKHPQGLSFAEAAASWMQYVTAWGALIEQAKLGEGDVVIVTAASSSVGLAAFQMARMVGAIVIATTRTSAKRQALLDAGAHYVVAVEEEDLVARVMEITGNTGARVVFDPVGGPSFEPLTASMKQGGILLEYGALSPEPTPFPLFTVLGKCLTLKGYLYSEVVADDAALGRAKAFIVAGLASGALRPVIARTFTLDQIQDAHRFLESNEQIGKVVVTV
>NZ_CP053708.1|WP_171837518.1|998786_999527_-|winged-helix-turn-helix-domain-containing-protein
MRVAIASINPRTLAFVSLLQEQGVQTEACDDLDDVSELAGLYDLDMLLLDVALAGADGSAIAGLRLMHATVPILVLGADIGLEQSIGCFAAGVDDIVALPCRIEILAARIRAIVRRFRGADPAICAIGPLRFDMIRRSLRLDGVPITLTSKEYELLEAMVLRKGAILTKDVLLDQLYGGRDAPNARTIDVFVCKLRKKLAACGVHDLIETVRGLGYILNDTPPDRPSTAYRPGLGFKGMSDAAQAA
>NZ_CP053708.1|WP_171837517.1|996118_997966_-|response-regulator
MLVDPHATCVVLPPGLDLGAGRGRKPGGDSFSLLTREGCLEGVLLVTLKTRRRLEAIERSSLEQLVYSASHTLDVIQLLEERRAEVEKVTALHRMADQSRRQIEAVFSAMPDAVLAVDEAWQPIFANEEARTLLSLGSICSSGSLDNTSGGGNLTSASGSPLWALFPAPVLEQIEASLRHAADTRSEMSCTIRWPSQADAPERYFAMRGVGHGSGTTVSLQDISRQIEADARDRQAAKMKAIGLLTGGIAHDFNNLLTVIMGNLELLQIDEGGSRHDSGSIEDAFQAARSAADLVHQLLAFARKQPLAPRLVNVAQLLREMTGLIKSSAGPLITIALTFDCASCHALIDATQLQNALINLAVNARDAMADGGTLTIRLSTTVITADSPPERDGLQPGDYVRIDVADTGYGVASEHLSHVFEPFFTTKPSGAGTGLGLSMVYGFVKQSRGHVGIVSTPGTGTTITLYLPRSLDSTANSTASVAVESQPPSGNGETILLVEDVDLVRHQTARMLRRLRYMVIEAADAQQALSAVMCGASPDLLLSDIELSGGINGPDLAQRLNVILPDMPVLFVSGYADDGSLNGNLVEPGQNLLQKPFSFYQLGSQVLNTVKRSVL
>NZ_CP053708.1|WP_171837516.1|995264_995954_-|response-regulator
MMIVEDDPAIGDMLLRFLIRSGMPAQIARSGREAMLLKETFGPDIVLLDLELPDTNGISLIPWLLRTGDCGIIVLSGNGEEAERVVGIELGADDYIIKPPSMRELVARIRAVHRRLARGRNNEIRPEASTTLRLAHAEVDLRKRVVIVENGDRIPLTGAEGKALELLVAARGEPLSREELCRQALRRPLGSEDRAVDQLIVGLRKKLSSRDSDDQIIVSVRGAGYALSA
>NZ_CP053708.1|WP_171837515.1|994627_995263_-|lytic-transglycosylase-domain-containing-protein
MRRWLAGTLLLAVQLLALAVHPSAKADPQDCQQAAHDAEEEFRLPQGLLGAIGRVESGHGRDNAPWPWTVAANKTGAFYETRAEAAAQVERLQAQGTRLIDVGCFQVDLFWHPGDFASVEESLDPRANARAAARFLVALHAETADWPSAVARYHSATPRLGTAYRDRVLGSAGSSQTLSIARKSDPYLIVVAGRRLDASVSFPHVVRAGLR
>NZ_CP053708.1|WP_171837528.1|994297_994489_-|Flp-family-type-IVb-pilin
MSLISAATVLINTFRDDKRGVTAIEYGLIASMMAVVLVVAVALVTGSLTTAFTSIGTHISTGK
>NZ_CP053708.1|WP_171834395.1|1005615_1005861_+|hypothetical-protein
MLVMVASAWQIYNSSPPLPSSFSHWVPLGGWLGGGIAWHLAAMWLLAGNALICFSSGMAGRHFSKVLFARDWAEVRHRSAG
>NZ_CP053708.1|WP_171834396.1|1005820_1006636_-|SDR-family-NAD(P)-dependent-oxidoreductase
MDLQLSGKTALVTGSSKGIGEAIATALAREKAIVVVHGRDRVRTEQVANAIIAEGGRAFAVGGDLTSDEDVERLVEEAESLAGSIDILVNNAGGSGGSTESWTDIQPGSWAAAYDRNVLAALRITRRLLPNMQHAKWGRVINISSIAGMMPPPSSPDYSACKAAMNAMTVSMSKAVAAHGVTVNAISPGTIHSITGDIRFREVAAERGLARQDAPWDEIERIVLPLFANVPVGRTGRVEEVADAVAFLASPIAGYITGVNLRIDGGLLPSL
>NZ_CP053708.1|WP_171834941.1|1006680_1007058_+|winged-helix-turn-helix-transcriptional-regulator
MGNTIRHLKVPIARESRAVCLGPDGAVAHVSRTMKMIQGRWKLPILFRLYADPAMRSSQLRQDLPAVSQKMLTQHLRQLEADRLIERTDFGEKPLRVEYRLSELGRNLLPVLVALRDFSTLQIAE
>NZ_CP053708.1|WP_171834942.1|1007443_1008715_+|MFS-transporter
MPNARWLMVWLCFLALAINYTDRANLAVAAPSIKHALGVDDTTMGFLLGSFFWTYALMQLPAGWLVDRFGARLMFPLAVCWWSLFTAMTALANSAATLFGFRLLLGAGEAGGYPASARVVARWFPPQERSLASSIFDSGSRAGNLVAIPLCSWLIATFGWRASFVVTGLLGFVWAVGWLMIYRKPENHPAVTPEALAEIEAGHAVPDADEPPIRWITLFRYRTIWGMMFGFFCLNFVIYFFITWFPTYLMTARHFSLRQFGTYGLIPGLIAIPGGWLGGVTSDWLYRRGWSLTAARKTCLVGGMLVSSVITLAAIVPAAWMALVLFGIAYAALAFTAASIWSLPGDVAPTKGHVASISGIQNFASNLAGVVTTSFTGVMLTITHGSFLIPLATAGGLCLLGAATYLFVVGPIEPLPVMSRRHA
>NZ_CP053708.1|WP_171834397.1|1008711_1009944_+|alpha-hydroxy-acid-oxidizing-protein
MMSPDGHTGPGRITSRQRRLLGQALELEDFAGLVRPFLPRAVHGYVTNGADSGGVVTSNRTIFDRWRMVTRVLRDVSARTQATTLFGHEYAAPFGIAPMGSAAVIAFDADNRMARAAASANVPFILSANSITPMEEVVKANPDMWFAAYQSPDHAKIERMVERVAQAGIKVFVLTVDVPVGSNRPADARTGYTMPLSPTPRLALDSILHPRWLVGTGMRTLSRRGMPAISNVEANEPIGLFSRNVGRVTGYSSFTWREAELIRKLWKGPFVLKGVLAAEDVRIAREGGIDGIVVSNHGGRQLGCAVSPMEVLHEIKAKSGDMTVIVDSGFRRGTDLLTACALGADFVLVGRPFLYATALAGEAGLRHAMSLLAREVDIGMGLLGVRTLAELGPEYLRATTGSVHEHQPEY
>NZ_CP053708.1|WP_171834398.1|1010095_1011283_+|pyridoxal-phosphate-dependent-aminotransferase
MDSLLFRSDTLARPGVEMLPGSLIREVAQEGLGLQGVIPLWFGEPDSVTPGFIRDAAKRALDDGQTFYTSNYGIYPLREAIARYQGRLGRISAPERVSVTSSGVNAILLACQTILAPGDRVVLPVPAWPNLAGIAAVVGAEVTAVPLRLHEARWQLDLDELLAALTPDTRMVILNAPANPTGAMLTRDEMVVILAHCRRHGIWILADDVYERVVFERDVAPSFLELADVDDRVVSINSFSKSWAMTGWRLGWITAPPALMSALGKITEFNTSCAPGFVQSAGIVALEQGEPFVAAMRARLQSRRDIAADLLDAIPGITTPRPEGAMYAFMRIAGCTDSLALAKSLLREARVGVAPGRAFGESGEGCLRLCFAVEEATLREAIGRIAAYFRMHPLA
>NZ_CP053708.1|WP_171834943.1|1011530_1012298_+|SDR-family-oxidoreductase
MADQFATYPSLRDRRVLVTGGASGIGASIVRHFAEQGAHVGFLDLDEAAAAATLAGMPEGSTVRFAKVDLRDIPALRLAIASLRDQLGGPFTVLVNNAARDDRHAIDDVTPEYWDDRMATNLRHQFFCVQALKPDMIAAGGGSIINMSSNSFLLASGGMPAYTAAKSAVIGLTRGLARDLGPHHIRANIVYPGWIITQRQLDLWMTDEAEQKRVSGQCIPDRLYEPDVARMVLWLAADDSRMVTAREFVVDGGWF
>NZ_CP053708.1|WP_171834399.1|1012328_1013267_-|glutathione-S-transferase-C-terminal-domain-containing-protein
MGLLVDGHWQDQWYETRDGRFERQDSKFRNWVTPDGQPGPSGEGGFRAEPGRYHLYVSLACPWAHRTLIMRRLKGLEQMIGVSVTHWLMAEHGWTFEPGPGVVGDPINGARLMHEVYTAADPHYTGRVTVPVLWDRQRRTIVSNESADIVRMLNSAFDAIGATPGDYVPASLLAEIDAVNARVYATVNNGVYRAGFATTQEAYEEAVTGLFDTLDWLEQRLAGQRYLVGDVPTEADIRLFTTLIRFDPVYHGHFKCNLRRIVDYPNLSRFVADVRQWPGVAETIDLDHIKRHYYQSHKTINPTGIVPLGPVA
>NZ_CP053708.1|WP_171834400.1|1013271_1013481_-|TOBE-domain-containing-protein
MKISARNILDGRIVALTKGATTAHVRLEIAGGAIVTASITNEAVDELGLAVGSLASAVIKSSDVMIAVD
>NZ_CP053708.1|WP_171834401.1|1013520_1014345_+|sulfotransferase
MSRTIHFISGLPRSGSTLLAALLRQNPMLRAEMSSPVAVLCERVLPVIGHGEYATMFDDQLRRQILNGLVDSYYAGTPEETVLFDTNRAWCAHMRVLADLRPGAFVIACVRDPVWIIDSFERLLRRNTYLVSKLHGVAHSATVFDRVEQLMAVQGAFGAAWQAVQDAYYGEFAHRLIVVDYDELVADPVRVLAALYDVLQLAPFEHDPNALAFEGGQAFDAALNTPGLHAVRPRVERTHRRTILPPQIVKRLAGTSFWRDPAHNPGGAFVIAPE

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Crispr_ID: NZ_CP053708_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053708_2

2879709-2879837

Orphan

Consensus_repeat	Method
CCGATCCTTGTAGGTGAGGAAGTTACG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP053708_2

>merge|NZ_CP053708|2|2879709-2879837|CRISPRCasFinder
CGTATCCTTGTAGGTGAGGAAGTTAGGTCCAAGGAAGTTACGTCACCGATCCTTGTAGGTGAGGAAGTTACGTCGCCGAGCATTTTGGAGATAATTAGCTCGCCGAGCCTTGTAGGTGAGGAAGTTACG

>NZ_CP053708|2|2|2879709-2879837|CRISPRCasFinder
CGTATCCTTGTAGGTGAGGAAGTTAGG	TCCAAGGAAGTTACGTCA
CCGATCCTTGTAGGTGAGGAAGTTACG	TCGCCGAGCATTTTGGAGATAATTAGCTCG
CCGAGCCTTGTAGGTGAGGAAGTTACG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053708.1\|WP_171836262.1\|2876476_2877139_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|214861
NZ_CP053708.1\|WP_171836590.1\|2889922_2890240_+\|50S-ribosomal-protein-L21	unknown	unknown	gnl\|CDD\|235510
NZ_CP053708.1\|WP_172443453.1\|2879934_2880981_-\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382
NZ_CP053708.1\|WP_171836589.1\|2887785_2889336_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271184
NZ_CP053708.1\|WP_171836586.1\|2882712_2883732_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053708.1\|WP_172443481.1\|2883989_2887253_+\|tape-measure-protein	unknown	unknown	gnl\|CDD\|235334
NZ_CP053708.1\|WP_171836584.1\|2881070_2882108_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053708.1\|WP_171836261.1\|2877372_2877621_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|279272
NZ_CP053708.1\|WP_171836592.1\|2890699_2891761_+\|GTPase-ObgE	unknown	unknown	gnl\|CDD\|237048
NZ_CP053708.1\|WP_171836266.1\|2873118_2873805_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053708.1\|WP_171836267.1\|2871983_2872241_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|117819
NZ_CP053708.1\|WP_171836591.1\|2890316_2890586_+\|50S-ribosomal-protein-L27	unknown	unknown	gnl\|CDD\|235464
NZ_CP053708.1\|WP_171836259.1\|2878436_2878643_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053708.1\|WP_171836588.1\|2887268_2887670_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053708.1\|WP_171836258.1\|2878898_2879192_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|238045
NZ_CP053708.1\|WP_171836264.1\|2874519_2875584_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053708.1\|WP_171836263.1\|2875776_2876253_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053708.1\|WP_171836585.1\|2882200_2882569_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053708.1\|WP_171836260.1\|2877763_2878264_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053708.1\|WP_171836265.1\|2873953_2874241_+\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239737

Protein	Function_ID	Function_description	E-value
NZ_CP053708.1\|WP_171836262.1\|2876476_2877139_-\|recombinase-family-protein	gnl\|CDD\|214861	smart00857, Resolvase, Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.	1.10214e-27
NZ_CP053708.1\|WP_171836267.1\|2871983_2872241_+\|hypothetical-protein	gnl\|CDD\|117819	pfam09274, ParG, ParG. Members of this family of plasmid partition proteins adopt a ribbon-helix-helix fold, with a core of four alpha-helices. They are an essential component of the DNA partition complex of the multidrug resistance plasmid TP228.	6.14446e-06
NZ_CP053708.1\|WP_172443453.1\|2879934_2880981_-\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	1.79637e-89
NZ_CP053708.1\|WP_171836258.1\|2878898_2879192_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	0.00114522
NZ_CP053708.1\|WP_172443481.1\|2883989_2887253_+\|tape-measure-protein	gnl\|CDD\|235334	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional.	6.41702e-06
NZ_CP053708.1\|WP_171836591.1\|2890316_2890586_+\|50S-ribosomal-protein-L27	gnl\|CDD\|235464	PRK05435, rpmA, 50S ribosomal protein L27; Validated.	2.32681e-51
NZ_CP053708.1\|WP_171836265.1\|2873953_2874241_+\|recombinase-family-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	3.8739e-08
NZ_CP053708.1\|WP_171836589.1\|2887785_2889336_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271184	cd01184, INT_C_like_1, Uncharacterized site-specific tyrosine recombinase, C-terminal catalytic domain. Tyrosine recombinase (integrase) belongs to a DNA breaking-rejoining enzyme superfamily. The catalytic domain containing six conserved active site residues. The recombination reaction involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	4.24781e-48
NZ_CP053708.1\|WP_171836590.1\|2889922_2890240_+\|50S-ribosomal-protein-L21	gnl\|CDD\|235510	PRK05573, rplU, 50S ribosomal protein L21; Validated.	9.67153e-53
NZ_CP053708.1\|WP_171836261.1\|2877372_2877621_+\|hypothetical-protein	gnl\|CDD\|279272	pfam00901, Orbi_VP5, Orbivirus outer capsid protein VP5. cryoelectron microscopy indicates that VP5 is a trimer implying that there are 360 copies of VP5 per virion.	0.00676259
NZ_CP053708.1\|WP_171836592.1\|2890699_2891761_+\|GTPase-ObgE	gnl\|CDD\|237048	PRK12299, obgE, GTPase CgtA; Reviewed.	0

>NZ_CP053708.1|WP_171836258.1|2878898_2879192_-|helix-turn-helix-domain-containing-protein
MAVKTTKARQTAPTIKPSHLRWMLTQARYSQVEFAVLIGVQPAQVNRWLRGKPAIPPGVGLIAAALMKLDARVLIETIREAELDADLAELTRVQQAG
>NZ_CP053708.1|WP_171836259.1|2878436_2878643_-|hypothetical-protein
MLAHAHTANTTLYMDLEADADRLVAAVHVQDLALNSRVKVLQVVEADGGTWIRTIVGEDDRASWCRAG
>NZ_CP053708.1|WP_171836260.1|2877763_2878264_-|hypothetical-protein
MLLYHYTSLTRLGPISVHGLWKGDVVLGTERPGELLATANAVWLTTDTCFKEHGLSKEKREVRLTVDISNSDDRLTAWVPWARKNVNPVWFAGLVDSGGGDRKAETWFIYDGIIPAYWIKKAARVGTGRLITRWADGRIIGRPDGRTSKMLKDWSDFTASRPRLVA
>NZ_CP053708.1|WP_171836261.1|2877372_2877621_+|hypothetical-protein
MPHAVDLNASLRPLDYRATADALQEALELRRPGLADAAMHSTMTGVVAELLADALIGAGYVVALPRRVTTQQGLTAETLTKG
>NZ_CP053708.1|WP_171836262.1|2876476_2877139_-|recombinase-family-protein
MAQGRFVAYFRVSTAKQGQSGLGLAAQSAAVQAYLNGGDWKLLGQFTDVESGKAADNRPELAKAMELAKLTGSTLVIAKLDRLSRNAAFLMNLADAGVDFVAVDMPNANRLTVGIMALVAQQEREAISARTKAALAATKAKGTVLGGWRGGSKVESGLGCDAQSDAADRRAASLHSRLSEMQGRGLSLRAIAAELSGSEIQTARGGAWTAAAVQRVLARL
>NZ_CP053708.1|WP_171836263.1|2875776_2876253_-|hypothetical-protein
MPIAARAVGCDYLAMNRDYLLEFEAILVGQECAISRREHDWLFALSGDGDLAVSVPWRVVSQGCIEFGSEDHGHLFGLSVPVDGEEMCRKLIGNRLVTSARVDRQTADLTLHFGSTIRIDIFNNSSGYEGWDAGVDAGSESMRVIALGGGNVAVFCKP
>NZ_CP053708.1|WP_171836264.1|2874519_2875584_+|hypothetical-protein
MVSSEQSPEPAWDRTTTYYSVVARFEENGNLDLWPLSSEQIKHDPTRVALQGWRSFIFELRSPIACFRNPVQVITTPRFRIYPPFDLNKKSSLASVLDEVLVPMGSDHVNNYVAIPDHATKGLRVDVTKEGWNVCYGIRIDAINSEDVSSVLQRFLKLVRQYTRQWWVASPTNFFDTGIRLRFDMDQSFRPREVSSARDIGPLESTWAGMASVQQLINIEEPLGADAWKNVGLCLQQNIEPDPCLSFFLAAIEDYKGHSDSQCILNLALMFEIGENKARMIHKMKTFSRNKDLLNNATVSLAADVKVFRDLITDRDNIAHGKAAVKARNDQALQKYLSASFRFMQKYLPLLQVS
>NZ_CP053708.1|WP_171836265.1|2873953_2874241_+|recombinase-family-protein
MMVSVCGYARISASNQDLTILRDALMPAGCSIIREDKTSGTSATEWTKLRTLLNFIRKGDSLSITCANRLAALSGTSRSSSRALKARGANLRCTE
>NZ_CP053708.1|WP_171836266.1|2873118_2873805_+|hypothetical-protein
MARRYTKLTKDEWSCIIDRYASGVTTIPELSARYSVSTSSIAQKVRAAGKVRTASFKPGAGIAAAAAAVAGIKLAPEPPIGAGKPTTAETEARIIATNAAALSGALMIQRMLQASLAVMTLPTTPHDVAATVRMLDQAATVAERVNKIRRTVLRMDRENSQSDAILPELPIRDMTTLETKSLRLEQALFDLNPLADPDHLDDPDQQLDQPDDEAEPDHIEGFDLDLAA
>NZ_CP053708.1|WP_171836267.1|2871983_2872241_+|hypothetical-protein
MTRFPKPNRQHDDDAADRFVKGIAAPAPAPAPAPAAKPDLSRPTVDIPTELHRQFKARCATDGTTMGEVVAKIMQSWLTDAQTKS
>NZ_CP053708.1|WP_172443453.1|2879934_2880981_-|IS30-family-transposase
MAGQRRKLTVFDRSMIEVRLCDSWGVRAIARDLDRSAGMISDEINRHGGATSYRAQAAATQAEADRRLTGRRPVLAHDGELFGRVAGLLRLGWSPEQISGRRKRMEAGTEQPPGLSVSHEAIYTAIYALPRGELRRELISYLRQDKPMRGRKPKGSERRGKLCNMTNIKERPEEIEGRLVPGHWEGDLILGTGGASAIGTLVERTSRFVVLVHMPTRKSDVVASAFSGALNAIPASLRKTLTYDQGKEMAQHESVALSTGMRIFFADPHSPWQRGSNENTNGLLRQYFPKGTALSGLDQDDLDIVADSLNSRPRKTLDYATPSEQFSMLLAGQAGVNKVFGVGVRSGT
>NZ_CP053708.1|WP_171836584.1|2881070_2882108_+|hypothetical-protein
MKILPPETTLSEASFSVTEPPKSKEVTSPILVAEEVRFKEVTSPILAAKEVRYRAPSPLDLSARTALRARQAFLVARALGTVPNVFITINVTCLPLYKSPADIGAASDHAFKNLDNLFRLAGITPTYIAIPERPKNKGTGYHWHSLVYIDRQRLDDACFRIEDRFRDLCGISVADWNARKAGNFAEGDCRRLPIHISTNQTHAEILTARRVGLSVAEAETKLVYSCKTVTGTALASINGILLPLSEHRADPDNHLPEYQASADRPGRRIRMSNNLNRSAAKKAGFTTEEDLAADLGWMDSAERARRASRPVTAIMPMSYADTREHYTYARSHLLPDDDFGILPDL
>NZ_CP053708.1|WP_171836585.1|2882200_2882569_+|hypothetical-protein
MAANGKLIGAHHRFTYEPMDLSFVRELLAHTLATTGKKYLRGELDRGEVEPITTLWVNAPDGVEWTISYEPSWPRYFTVSTAADLESYREHQARKYMYFENARRFAAATENDLETAIHTESS
>NZ_CP053708.1|WP_171836586.1|2882712_2883732_+|hypothetical-protein
MTASTITSGAHSAIGIFQPRHGTMRGMPVFAPDGDEGTAAEATAEPGKSMSPEAHKLLKELMSLKADIRASKKATSERLAAFEAAGINPDTYHADLAALKTSMAASAAAVAAADQDKAITAENWNGIRANLIAANKAELQTVHDQLAASGNALKERNSIIADLTLGAAFAGSKFIADETVFTGSKARKLFEDRFSTENGKVIAYDAPHGTEGRSPMVDGAGEPVSFDTAMRAIIDADPERTSIMRASRLKSGTAQKPVPVHVGAGIDRIAVALHERHGTQSQSEDGAAPVSLNHRDTHKPHGVNTVAKRDVGPSRISDALKAGSLPRSSQGGPVRSATP
>NZ_CP053708.1|WP_172443481.1|2883989_2887253_+|tape-measure-protein
MKQMQAASAATTQAINAQAAAMSALKTASGGIGAAGAGKNTLGISLGSLAGIAGGLIGIGTAAEIAITGFEKISAAFAEVITAGDAMTAALNQIQATTGSTRAEAATTYDAITAAAIRTGTATADLTKQFTQMFTSLGPIGQTKAQVLDLATTLSELATISGTSGAASARAVRELNEGLAIGAINLRQLKIVGQDSPALLAALAKAVGVTTGALEAMAGAGELTSARVVAALEKMKVNVDATFNSIPRTLESSRTALTDSLNKLAADIDQTLGASQTLARWDRFWASVVSSLDHAVDSSITPKLAEANREVANFQAQLSKPTTATAFGLPDDKGAIRASLADAVAYRDGLQRQLDTQNAASDATARANKVSNDQAVAVEAASKAMNALGLEHSKTTPEIETLTAALARGQDVTVPYNDGVLHASQLLDLLRQKATPAAQAIATLNEELVKASAANLGGAQAKLTDILLKADPADKTGKGIDLSATQMDALTAGNNALLAAQGQKDVAEAQNRLKLAQAAAAGRAANDHGLAEANERIRQTREKFLKDHGSSPASVSEANQISTADTTAAQLTASSKAIKAAQPGINVLTDLKAKVAEATASIHGSGTAVAEWTEKLKTASPSVKAQGAAILAYAAQLDVATAAQKRAEAAQEALQRLQGNVAKASEDAATAQAESGDGARSALQRQIDNYKRQQDALVRTATADTSNPERGIEASSDAAKATSTEAQALIQQQVTANSTATLTIRKSWDDTFTGRRTAALAEVSEEGKALQQTIDLYVTNADDKKRLTDQTNAYITAKTQEALRQTESQTEKLGRTWADTTAAMDTATASFASGFVDATVDSLNGGKSAWSDYASSVIKELEKIALQAALSPLLKMAGGSTGGILGLLTTAATGIFGAAAGLPTAGMSSGEVAFVNAAGHHKGGIVGSEPTFMRNVPASLFANAPRYHTDGIVGGEVPAILQKGEGVFTAGQMEAIGSQAASMAALSQVVSAFSASRMTPPSDLGSSHGAPANYNYNIGSPANVGGGTSSTAAGPSSPPISINFHNQTGQNQTATASQPRFDGEKMIIDIVTKHVNQPGALRTAIRS
>NZ_CP053708.1|WP_171836588.1|2887268_2887670_-|hypothetical-protein
MPVDADYLAAIGMATYCFATMEWNAVYCGEKLKPGYVNDVSTKTAGVIANEILGFAPLVSGSIKQASYQAAVSELVALVKRRNDLMHANPATIGNDQRLVRNGIALQISDINDLADDFTACSLKLNELLQHLP
>NZ_CP053708.1|WP_171836589.1|2887785_2889336_-|tyrosine-type-recombinase/integrase
MGGPENEIKRLIGHWFERQLEVAWKQFTAGTQVAALVADIDDPGEQRAQSRHLMSELADQRYDRLSESYHAKDYRDAYPAVREILSELDAPIAEDDRRFTLIAREVVLGEGELANAQVHWAEGQEDHTPAWTPDLPEALFPRPVPVVMPAAAVVAPSPVDAGPKASGVTLSQVFERYTSASHMTAGTKVDFGVSIRRFIEVHGDLDLHHIQKRHVIEFRDAMIRLPRNGGRGLTVPQLLAASDGKDVPRLAPTTINEKSLAALKATLNYALDSDLVRENVAARVAVKVKKNAGPSRLPYDPADLQTIFALPIFTVGDRPVAGGGEAAIWLPILALFTGARLDELGTLTVGDVRERDGVRFLFIKDGKTINARRKIPIHSEVIRLGFLDYVKTRGSRPDTYVFPSVRSDLDEATAPFSKWWGRYARKAIPDTRKVFHSFRHTAKLALRNAGVDKTLRDAIQGHDPGDVAERYGLDEDGEGYSLSVIAEAVEKISYPGLSIAISFPPLRKHANTASSS
>NZ_CP053708.1|WP_171836590.1|2889922_2890240_+|50S-ribosomal-protein-L21
MFAVIRTGGKQYRVNPQDVLKVEKLDYEAGATVTFTDVLAVGSAEGGITIGAPLVAGATVTATVIAQDRLDTIIIFKKRRRQNSRRRNGHRQPVTVLRINEISAA
>NZ_CP053708.1|WP_171836591.1|2890316_2890586_+|50S-ribosomal-protein-L27
MAHKKAGGSSRNGRDTAGRRLGVKKFGGESVIAGNIIIRQRGTKMKPGRNVGLGKDHTIFALIDGHVKFETRAEGRVQVSVEAMAIAAE
>NZ_CP053708.1|WP_171836592.1|2890699_2891761_+|GTPase-ObgE
MKFLDQAKIYVKSGDGGDGAIAFRREKYVEFGGPDGGTGGRGGDITFEAVANLNTLIDFRYTQHFRARKGGNGSGSDRTGAGADNVVIKVPIGTQIFDESKDLLLADLDEAGKKILLCKGGDGGHGNANFKTSTNRAPRRADKGWPGEERWIWLRLKLIADAGLIGLPNAGKSTFLSVASAARPKIADYPFTTLHPQLGVVRLSDSEEFVLADIPGLIEGAHDGAGLGDRFLGHVERCAVLLHLIDGASGNVVDAWRTIREELIAYGNGLADKPEIVAINKTDAMTPQQIGTRRRALEKATGNPVLMLSAATHGKVPEALRMLQDRVTQFRKDGAPAPRRRIVEDGASSRLPE

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP053708_2	2.1\|2879736\|18\|NZ_CP053708\|CRISPRCasFinder	2879736-2879753	18	NZ_CP053708.1	2881137-2881154	0	1.0

1. spacer 2.1|2879736|18|NZ_CP053708|CRISPRCasFinder matches to position: 2881137-2881154, mismatch: 0, identity: 1.0

tccaaggaagttacgtca	CRISPR spacer
tccaaggaagttacgtca	Protospacer
******************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

783321 : 819618

Salmonella_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_171833599.1\|783321_784149_-\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	2.8e-22	38.2
WP_171833606.1\|784085_785330_+	hypothetical protein	NA	NA	NA	NA
WP_171833600.1\|786209_786548_+	DUF3225 domain-containing protein	NA	NA	NA	NA
WP_172443435.1\|788689_789643_-	hypothetical protein	NA	NA	NA	NA
WP_172443436.1\|789639_790827_-	SIS domain-containing protein	NA	NA	NA	NA
WP_172443437.1\|790886_792005_-	SIS domain-containing protein	NA	NA	NA	NA
WP_171837923.1\|792252_793026_+	DeoR family transcriptional regulator	A0A077SK06	Escherichia_phage	1.3e-21	33.9
WP_172443438.1\|793121_794651_+	hypothetical protein	NA	NA	NA	NA
WP_172443510.1\|794710_795640_+	ABC transporter permease	NA	NA	NA	NA
WP_172443439.1\|795636_796482_+	ABC transporter permease	NA	NA	NA	NA
WP_172443440.1\|796478_797423_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.4e-17	37.1
WP_172443441.1\|797427_798423_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.9e-18	31.9
WP_172443442.1\|798419_799133_+	aspartate/glutamate racemase family protein	NA	NA	NA	NA
WP_172443511.1\|799165_800668_+	amidohydrolase family protein	NA	NA	NA	NA
WP_172443512.1\|800685_801570_+	polysaccharide deacetylase family protein	NA	NA	NA	NA
WP_172443443.1\|801761_804260_+	TonB-dependent receptor	NA	NA	NA	NA
WP_172443444.1\|804259_805135_+	ABC transporter permease	NA	NA	NA	NA
WP_172443445.1\|805131_805923_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_172443446.1\|805924_807022_+	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	5.9e-20	29.5
WP_172443447.1\|807018_808239_+	extracellular solute-binding protein	NA	NA	NA	NA
WP_172443448.1\|810112_810913_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	2.2e-77	53.6
WP_172443513.1\|810909_811143_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	5.1e-14	50.6
WP_172443449.1\|811146_811878_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	1.5e-51	44.7
WP_172443450.1\|811896_812700_-\|transposase	IS5 family transposase	A0A0M5M147	Mycobacterium_phage	3.2e-23	32.5
WP_171837745.1\|812931_815880_-	beta-propeller fold lactonase family protein	NA	NA	NA	NA
WP_171837768.1\|816183_816891_+	response regulator	NA	NA	NA	NA
WP_171837743.1\|818217_819618_+\|transposase	ISKra4 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

842921 : 883343

Staphylococcus_prophage(42.86%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_171837769.1\|842921_843263_-\|transposase	transposase family protein	NA	NA	NA	NA
WP_171837761.1\|843758_843920_-	hypothetical protein	NA	NA	NA	NA
WP_171837762.1\|844053_844578_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_171835345.1\|844739_845243_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_171837763.1\|845232_845874_+	DUF1109 family protein	NA	NA	NA	NA
WP_171837764.1\|846271_846469_-	hypothetical protein	NA	NA	NA	NA
WP_171837765.1\|846476_847736_-	beta-propeller fold lactonase family protein	NA	NA	NA	NA
WP_171837766.1\|848406_848787_+	hypothetical protein	NA	NA	NA	NA
WP_171837767.1\|848819_849290_+	hypothetical protein	NA	NA	NA	NA
WP_172443451.1\|849295_849787_+	hypothetical protein	NA	NA	NA	NA
WP_172443514.1\|849980_851501_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	3.6e-124	47.2
WP_171837778.1\|851511_852246_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.0e-60	49.4
WP_171837701.1\|852357_852639_+	hypothetical protein	NA	NA	NA	NA
WP_171837706.1\|853033_853885_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_171837700.1\|855064_856633_-	cation:proton antiporter	NA	NA	NA	NA
WP_171837699.1\|856756_857665_-	EamA family transporter	NA	NA	NA	NA
WP_171837698.1\|857709_858516_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_171837697.1\|858543_858927_-	tautomerase family protein	NA	NA	NA	NA
WP_171837696.1\|858990_859449_-	DUF302 domain-containing protein	NA	NA	NA	NA
WP_171837705.1\|859445_860066_-	DUF417 family protein	NA	NA	NA	NA
WP_171837704.1\|860102_860444_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_171837703.1\|860571_861495_+	cupin domain-containing protein	NA	NA	NA	NA
WP_171837695.1\|861740_862514_-	DJ-1/PfpI family protein	NA	NA	NA	NA
WP_171837694.1\|862677_863448_-	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_171837693.1\|863480_864350_-	NAD(P)H-binding protein	NA	NA	NA	NA
WP_171837692.1\|864451_865381_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_171837702.1\|865628_866606_+	zinc-binding dehydrogenase	NA	NA	NA	NA
WP_172443452.1\|867405_868452_-\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	2.6e-49	38.1
WP_171837663.1\|868873_869908_-\|transposase	IS630 family transposase	S5VXX4	Leptospira_phage	1.5e-81	45.5
WP_171837629.1\|870185_871004_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_171837621.1\|871182_871599_-	TIGR01244 family phosphatase	NA	NA	NA	NA
WP_171837622.1\|871608_872064_-	YeeE/YedE family protein	NA	NA	NA	NA
WP_171837630.1\|872060_872480_-	YeeE/YedE family protein	NA	NA	NA	NA
WP_171837623.1\|872503_873430_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_171837624.1\|873654_874284_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_171837625.1\|874676_875423_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_171837626.1\|875510_876530_+	zinc-binding dehydrogenase	NA	NA	NA	NA
WP_171837627.1\|876569_877463_+	haloalkane dehalogenase	B9U1C3	Vaccinia_virus	4.6e-47	37.5
WP_171837628.1\|878768_879131_+	hypothetical protein	NA	NA	NA	NA
WP_172443453.1\|879140_880187_-\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	3.4e-49	38.1
WP_172443454.1\|880235_880637_+	hypothetical protein	NA	NA	NA	NA
WP_171837861.1\|880804_882178_-	TonB-dependent receptor	NA	NA	NA	NA
WP_172443453.1\|882296_883343_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	3.4e-49	38.1

DBSCAN-SWA_3

1446010 : 1495439

Pseudomonas_phage(20.0%)

portal,protease,capsid,head,terminase,tail,integrase,plate,tRNA

attL 1446499:1446515|attR 1475544:1475560

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_171834741.1\|1446010_1447261_+\|tRNA	histidine--tRNA ligase	NA	NA	NA	NA
1446499:1446515	attL	NA	NA	NA	NA
WP_171834742.1\|1447270_1448326_+	peptide chain release factor 1	NA	NA	NA	NA
WP_171834743.1\|1448476_1449322_-	acyltransferase family protein	NA	NA	NA	NA
WP_171835005.1\|1449517_1450618_+	glycosyltransferase	NA	NA	NA	NA
WP_171835006.1\|1450632_1451007_-	hypothetical protein	NA	NA	NA	NA
WP_171834744.1\|1451146_1452007_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_171834745.1\|1452350_1452827_+	DUF4167 domain-containing protein	NA	NA	NA	NA
WP_171834746.1\|1452918_1454061_-	mechanosensitive ion channel	NA	NA	NA	NA
WP_171834747.1\|1454332_1455442_-\|integrase	tyrosine-type recombinase/integrase	B0VK72	Azospirillum_phage	2.7e-36	35.7
WP_171834748.1\|1455442_1455682_-	hypothetical protein	NA	NA	NA	NA
WP_171834749.1\|1455674_1455863_-	hypothetical protein	NA	NA	NA	NA
WP_171835007.1\|1456459_1458217_-	DNA cytosine methyltransferase	A0A068CDI9	Rhizobium_phage	2.5e-145	46.3
WP_171834750.1\|1458249_1458495_-	hypothetical protein	NA	NA	NA	NA
WP_171834751.1\|1458679_1459621_-	hypothetical protein	NA	NA	NA	NA
WP_171834752.1\|1459617_1460082_-	hypothetical protein	NA	NA	NA	NA
WP_171834753.1\|1460164_1460548_-	hypothetical protein	NA	NA	NA	NA
WP_171834754.1\|1460534_1460771_-	hypothetical protein	NA	NA	NA	NA
WP_171834755.1\|1460901_1461309_-	hypothetical protein	NA	NA	NA	NA
WP_171834756.1\|1461642_1462161_-	hypothetical protein	NA	NA	NA	NA
WP_171834757.1\|1462649_1463024_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_171834758.1\|1463339_1463738_+	hypothetical protein	NA	NA	NA	NA
WP_171834759.1\|1463744_1464059_-	hypothetical protein	NA	NA	NA	NA
WP_171834760.1\|1464599_1465181_+	hypothetical protein	NA	NA	NA	NA
WP_171834761.1\|1465361_1465694_+	hypothetical protein	NA	NA	NA	NA
WP_171834762.1\|1465818_1466238_+	hypothetical protein	NA	NA	NA	NA
WP_171834763.1\|1466230_1466509_+	DUF2312 domain-containing protein	B0VK10	Azospirillum_phage	5.3e-18	55.7
WP_171834764.1\|1466513_1467047_+	HNH endonuclease	V9SI64	Achromobacter_phage	3.1e-14	30.6
WP_171835008.1\|1467145_1467487_+	hypothetical protein	NA	NA	NA	NA
WP_171834765.1\|1467483_1467714_+	hypothetical protein	NA	NA	NA	NA
WP_171834766.1\|1467973_1468558_+	hypothetical protein	NA	NA	NA	NA
WP_171834767.1\|1468554_1469457_+	DUF1376 domain-containing protein	H2BD69	Pseudomonas_phage	6.8e-22	44.9
WP_171834768.1\|1469453_1470239_+	hypothetical protein	NA	NA	NA	NA
WP_171834769.1\|1470235_1470970_+	phage antirepressor KilAC domain-containing protein	A0A067ZIN2	Vibrio_phage	5.5e-30	37.1
WP_171834770.1\|1471041_1471746_+	hypothetical protein	NA	NA	NA	NA
WP_171834771.1\|1471856_1472276_+	hypothetical protein	NA	NA	NA	NA
WP_171834772.1\|1472426_1473290_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_171834773.1\|1473304_1473937_+	DUF3164 family protein	A0A1B0T6G5	Thiobacimonas_phage	2.0e-49	48.0
WP_171834774.1\|1473949_1474195_+	hypothetical protein	NA	NA	NA	NA
WP_171834775.1\|1474244_1475285_+	glycosyltransferase family 1 protein	B2ZY71	Ralstonia_phage	1.4e-74	46.6
WP_171834776.1\|1475299_1475494_+	hypothetical protein	NA	NA	NA	NA
WP_171835009.1\|1475520_1475838_+	HNH endonuclease	NA	NA	NA	NA
1475544:1475560	attR	NA	NA	NA	NA
WP_171834777.1\|1476029_1476542_+\|terminase	P27 family phage terminase small subunit	NA	NA	NA	NA
WP_172443461.1\|1476985_1479325_+	hypothetical protein	A0A0R6PIP7	Moraxella_phage	6.1e-115	50.6
WP_171834779.1\|1479324_1480629_+\|portal	phage portal protein	A0A2D1GNU4	Pseudomonas_phage	1.0e-50	34.9
WP_171834780.1\|1480651_1481347_+\|head,protease	HK97 family phage prohead protease	H9YSG6	environmental_Halophage	2.3e-14	33.5
WP_171834781.1\|1481456_1483010_+\|capsid	phage major capsid protein	A4JX01	Burkholderia_virus	1.6e-58	35.1
WP_171834782.1\|1483019_1483220_+	hypothetical protein	NA	NA	NA	NA
WP_171834783.1\|1483226_1483631_+	hypothetical protein	NA	NA	NA	NA
WP_171834784.1\|1483647_1484277_+\|head,tail	phage head-tail connector protein	NA	NA	NA	NA
WP_171834785.1\|1484280_1484661_+	hypothetical protein	NA	NA	NA	NA
WP_171834786.1\|1484660_1485191_+	hypothetical protein	NA	NA	NA	NA
WP_171834787.1\|1485190_1485655_+	hypothetical protein	NA	NA	NA	NA
WP_171834788.1\|1485651_1486194_+	hypothetical protein	NA	NA	NA	NA
WP_171834789.1\|1486208_1486433_+	DUF2635 domain-containing protein	NA	NA	NA	NA
WP_171834790.1\|1486445_1487936_+\|tail	phage tail sheath subtilisin-like domain-containing protein	NA	NA	NA	NA
WP_171834791.1\|1487947_1488346_+\|tail	phage tail tube protein	NA	NA	NA	NA
WP_171834792.1\|1488345_1488660_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_171835010.1\|1488605_1488809_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_171834793.1\|1488808_1489594_+	DNA circularization N-terminal domain-containing protein	A0A2P9JZK2	Alteromonadaceae_phage	2.0e-14	30.4
WP_171834794.1\|1489590_1490160_+	hypothetical protein	NA	NA	NA	NA
WP_171834795.1\|1490167_1491331_+	hypothetical protein	B5TK72	Pseudomonas_phage	8.4e-41	32.4
WP_171834796.1\|1491344_1493378_+	hypothetical protein	W6Q7I9	Citrobacter_phage	1.8e-14	40.5
WP_171834797.1\|1493374_1493869_+\|plate	phage baseplate assembly protein	NA	NA	NA	NA
WP_171834798.1\|1493872_1494325_+	phage GP46 family protein	NA	NA	NA	NA
WP_171834799.1\|1494326_1495439_+\|plate	baseplate J/gp47 family protein	NA	NA	NA	NA

DBSCAN-SWA_4

4274603 : 4299145

Stx2-converting_phage(37.5%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_172443453.1\|4274603_4275650_-\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	3.4e-49	38.1
WP_171837900.1\|4276743_4277277_+	hypothetical protein	NA	NA	NA	NA
WP_171837901.1\|4277990_4278347_+	phosphonate transporter	NA	NA	NA	NA
WP_171837902.1\|4278339_4278753_+	hypothetical protein	NA	NA	NA	NA
WP_171837903.1\|4278946_4279156_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_171837898.1\|4279441_4279633_+	hypothetical protein	NA	NA	NA	NA
WP_171837904.1\|4279598_4279916_+	excisionase family DNA-binding protein	NA	NA	NA	NA
WP_171837905.1\|4279912_4280209_+	excisionase family DNA-binding protein	NA	NA	NA	NA
WP_171837906.1\|4280251_4280485_-	hypothetical protein	NA	NA	NA	NA
WP_171837899.1\|4280448_4280586_-	hypothetical protein	NA	NA	NA	NA
WP_171837907.1\|4281138_4281390_+	hypothetical protein	NA	NA	NA	NA
WP_171837908.1\|4282268_4282865_+	hypothetical protein	A0A0F6PKJ5	Escherichia_phage	6.9e-15	36.9
WP_172443453.1\|4283483_4284530_-\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	3.4e-49	38.1
WP_171837535.1\|4284510_4285074_-	hypothetical protein	NA	NA	NA	NA
WP_171837534.1\|4285433_4285796_+	hypothetical protein	NA	NA	NA	NA
WP_171837533.1\|4286366_4286843_+	hypothetical protein	NA	NA	NA	NA
WP_171837532.1\|4287792_4288065_+	hypothetical protein	NA	NA	NA	NA
WP_171837390.1\|4288851_4289619_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	3.2e-57	47.5
WP_171837391.1\|4289630_4291163_-\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	3.3e-117	44.3
WP_171837970.1\|4291371_4291737_+	hypothetical protein	NA	NA	NA	NA
WP_171837971.1\|4291907_4292726_-	hypothetical protein	NA	NA	NA	NA
WP_171837972.1\|4293581_4295588_+	GAF domain-containing protein	NA	NA	NA	NA
WP_171837973.1\|4295641_4295962_+	response regulator	NA	NA	NA	NA
WP_171837974.1\|4296049_4296295_+	hypothetical protein	NA	NA	NA	NA
WP_172443497.1\|4296327_4296747_-\|transposase	transposase	A0A0P0ZBS5	Stx2-converting_phage	9.1e-30	48.4
WP_172443516.1\|4296770_4298306_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.4e-112	45.8
WP_172443498.1\|4298396_4298744_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	4.3e-33	60.7
WP_171837671.1\|4298740_4299145_-\|transposase	transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP053709

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP053709_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053709_1

281128-281725

Orphan

Consensus_repeat	Method
CGCCACAGGATACACGNGGNNANC	CRT
CTCAACCCGCCACAGGATACACGTGGATAACT	CRISPRCasFinder

8 spacers

The CRISPR arrays of NZ_CP053709_1

>merge|NZ_CP053709|1|281128-281725|CRT,CRISPRCasFinder
CGCCACAGGATACACGCGGTCATTTCCGCCACAGGATACACGCGTTTCCGCCATAGGATACACGCGTTCGCGCCACAGGATACACGTGGACGGTTTCGCGTTTCCTAGAGTTACCGCGTTGATCTATAGGGGTTTTTATGACTTGCCATAGGATACACGTGGATAACTCATTATATTCACAACCTTATGGATAGCCCAGAGGTCCGGGATCAATCCGCCACAGGATACACGTGGATAACCGCGACGATGGGCGATGAGGTGTGCGAGCGGTCTGGTCTCGATCCGCCACAGGATACACGTGGATAACCCTTCGCTATTTCTAGCTGAGTCCTCCCGGCTGACTCAGCGTCAATCCGCCACAGGATACACGCGATAACCCTCGGCTGTTCCTGGCTGAGCCCTCTCGGCTGATTCAACCTCAACCCGCCACAGGATACACGTGGATAACTCCCAGCTTTCCCTTGGAGTTAAGTCGCGGCGGCTTCTCTGGGCTCAATCCGCCACAGGATACACGTGGATAACTGCCCGCCTCCACTTGGGGGTTAAGTCCCGGCGGGCAGTCTCGGCTCAATCCGCCACAGGATACACGCGGTTAACC

>NZ_CP053709|1|1|281128-281724|CRT
CGCCACAGGATACACGCGGTCATT	TCCGCCACAGGATACACGCGTTTCCGCCATAGGATACACGCGTTCG
CGCCACAGGATACACGTGGACGGT	TTCGCGTTTCCTAGAGTTACCGCGTTGATCTATAGGGGTTTTTATGACT
TGCCATAGGATACACGTGGATAAC	TCATTATATTCACAACCTTATGGATAGCCCAGAGGTCCGGGATCAATC
CGCCACAGGATACACGTGGATAAC	CGCGACGATGGGCGATGAGGTGTGCGAGCGGTCTGGTCTCGATC
CGCCACAGGATACACGTGGATAAC	CCTTCGCTATTTCTAGCTGAGTCCTCCCGGCTGACTCAGCGTCAATC
CGCCACAGGATACACGCGATAACC	CTCGGCTGTTCCTGGCTGAGCCCTCTCGGCTGATTCAACCTCAACC
CGCCACAGGATACACGTGGATAAC	TCCCAGCTTTCCCTTGGAGTTAAGTCGCGGCGGCTTCTCTGGGCTCAATC
CGCCACAGGATACACGTGGATAAC	TGCCCGCCTCCACTTGGGGGTTAAGTCCCGGCGGGCAGTCTCGGCTCAATC
CGCCACAGGATACACGCGGTTAAC

>NZ_CP053709|1|1|281191-281725|CRISPRCasFinder
GCGTTCGCGCCACAGGATACACGTGGACGGTT	TCGCGTTTCCTAGAGTTACCGCGTTGATCTATAGGGGTTTT
TATGACTTGCCATAGGATACACGTGGATAACT	CATTATATTCACAACCTTATGGATAGCCCAGAGGTCCGGG
ATCAATCCGCCACAGGATACACGTGGATAACC	GCGACGATGGGCGATGAGGTGTGCGAGCGGTCTGGT
CTCGATCCGCCACAGGATACACGTGGATAACC	CTTCGCTATTTCTAGCTGAGTCCTCCCGGCTGACTCAGC
GTCAATCCGCCACAGGATACACGCGATAACCC	TCGGCTGTTCCTGGCTGAGCCCTCTCGGCTGATTCAAC
CTCAACCCGCCACAGGATACACGTGGATAACT	CCCAGCTTTCCCTTGGAGTTAAGTCGCGGCGGCTTCTCTGGG
CTCAATCCGCCACAGGATACACGTGGATAACT	GCCCGCCTCCACTTGGGGGTTAAGTCCCGGCGGGCAGTCTCGG
CTCAATCCGCCACAGGATACACGCGGTTAACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053709.1\|WP_171836057.1\|272048_273395_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340877
NZ_CP053709.1\|WP_171833919.1\|282431_283097_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|224113
NZ_CP053709.1\|WP_171836059.1\|274528_275800_-\|beta-propeller-fold-lactonase-family-protein	unknown	unknown	gnl\|CDD\|378416
NZ_CP053709.1\|WP_171833917.1\|287142_287601_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053709.1\|WP_171836050.1\|268264_268423_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053709.1\|WP_171836054.1\|269091_270360_-\|four-carbon-acid-sugar-kinase-family-protein	unknown	unknown	gnl\|CDD\|225930
NZ_CP053709.1\|WP_171836058.1\|273476_274532_-\|isocitrate/isopropylmalate-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|223549
NZ_CP053709.1\|WP_171836055.1\|270403_271063_-\|arylsulfatase	unknown	unknown	unknown
NZ_CP053709.1\|WP_171836056.1\|271059_271962_-\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|238636
NZ_CP053709.1\|WP_171833920.1\|282072_282435_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053709.1\|WP_172443551.1\|276105_277107_+\|GntR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224715
NZ_CP053709.1\|WP_171833921.1\|281782_281938_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053709.1\|WP_172443552.1\|277103_278918_-\|carbohydrate-porin	unknown	unknown	gnl\|CDD\|335962
NZ_CP053709.1\|WP_171833918.1\|286656_287052_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053709.1\|WP_171833916.1\|287897_288884_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|183262
NZ_CP053709.1\|WP_171833915.1\|288888_289440_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053709.1\|WP_171837419.1\|279826_280501_-\|IS6-family-transposase	unknown	unknown	gnl\|CDD\|225853
NZ_CP053709.1\|WP_171833927.1\|284921_286019_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053709.1\|WP_171833928.1\|283569_284667_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271180
NZ_CP053709.1\|WP_171833914.1\|289442_289754_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP053709.1\|WP_171836057.1\|272048_273395_-\|MFS-transporter	gnl\|CDD\|340877	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily. This family is composed of predominantly bacterial transporters for hexuronate (ExuT), glucarate (GudP), galactarate (GarP), and galactonate (DgoT). They mediate the uptake of these compounds into the cell. They belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.58989e-82
NZ_CP053709.1\|WP_171833919.1\|282431_283097_-\|AAA-family-ATPase	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	2.20881e-24
NZ_CP053709.1\|WP_172443551.1\|276105_277107_+\|GntR-family-transcriptional-regulator	gnl\|CDD\|224715	COG1802, GntR, Transcriptional regulators [Transcription].	4.23774e-23
NZ_CP053709.1\|WP_171836059.1\|274528_275800_-\|beta-propeller-fold-lactonase-family-protein	gnl\|CDD\|378416	pfam10282, Lactonase, Lactonase, 7-bladed beta-propeller. This entry contains bacterial 6-phosphogluconolactonases (6PGL)YbhE-type (EC:3.1.1.31) which hydrolyze 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonising enzyme carboxy-cis,cis-muconate cyclase (EC:5.5.1.5) and muconate cycloisomerase (EC:5.5.1.1), which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold.	1.52042e-101
NZ_CP053709.1\|WP_172443552.1\|277103_278918_-\|carbohydrate-porin	gnl\|CDD\|335962	pfam04966, OprB, Carbohydrate-selective porin, OprB family.	6.01645e-74
NZ_CP053709.1\|WP_171833916.1\|287897_288884_+\|hypothetical-protein	gnl\|CDD\|183262	PRK11657, dsbG, disulfide isomerase/thiol-disulfide oxidase; Provisional.	1.70223e-12
NZ_CP053709.1\|WP_171836054.1\|269091_270360_-\|four-carbon-acid-sugar-kinase-family-protein	gnl\|CDD\|225930	COG3395, COG3395, Uncharacterized protein conserved in bacteria [Function unknown].	6.69649e-119
NZ_CP053709.1\|WP_171837419.1\|279826_280501_-\|IS6-family-transposase	gnl\|CDD\|225853	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	2.50148e-72
NZ_CP053709.1\|WP_171836058.1\|273476_274532_-\|isocitrate/isopropylmalate-dehydrogenase-family-protein	gnl\|CDD\|223549	COG0473, LeuB, Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism].	4.75653e-130
NZ_CP053709.1\|WP_171833928.1\|283569_284667_-\|site-specific-integrase	gnl\|CDD\|271180	cd00799, INT_Cre_C, C-terminal catalytic domain of Cre recombinase (also called integrase). Cre-like recombinases are tyrosine based site specific recombinases. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The bacteriophage P1 Cre recombinase maintains the circular phage replicon in a monomeric state by catalyzing a site-specific recombination between two loxP sites. The catalytic core domain of Cre recombinase is linked to a more divergent helical N-terminal domain, which interacts primarily with the DNA major groove proximal to the crossover region.	2.98905e-43
NZ_CP053709.1\|WP_171836056.1\|271059_271962_-\|amidohydrolase-family-protein	gnl\|CDD\|238636	cd01311, PDC_hydrolase, 2-pyrone-4,6-dicarboxylic acid (PDC) hydrolase hydrolyzes PDC to yield 4-oxalomesaconic acid (OMA) or its tautomer, 4-carboxy-2-hydroxymuconic acid (CHM). This reaction is part of the protocatechuate (PCA) 4,5-cleavage pathway. PCA is one of the most important intermediate metabolites in the bacterial pathways for various phenolic compounds, including lignin, which is the most abundant aromatic material in nature.	1.28276e-58

>NZ_CP053709.1|WP_171837419.1|279826_280501_-|IS6-family-transposase
MAIEFKGSHFERDVILWGVRWYVAYPLSYRQIEEMMAERGVEVDHSTLHRWVLKYVPKLEDAFLARKRPVGGSWRMDETYVRIKGVWTYLYRAVDKAGATVDFLLTARRDRKAALRFLRKAAGRHGVPRKITIDKSGANTAAIESYNTEHDATIEIRRIKFLNNIVEQDHRAIKRMTRPMLSFKSFWSARITLAGIEIMHMIRKGQLHSTGKLRPAQQFYSLAE
>NZ_CP053709.1|WP_172443552.1|277103_278918_-|carbohydrate-porin
MAAKISWLPVTTHALLGHIHIAQNAALIQSSEAGLGCFGRERARQAPREEDDLHAGETAPTGMAFGMIGSDHLSIGERHPRKGRAHRHGALYSVRVASPLARSVDGLRIAECSSVLSSSAADVRRATRRLASICRRRRLAVLISLGFLSAGWEARAQTSNVGFSSGPSIDVATPLQPNLPFFTTPLLPKTDGMIGVWPDFRRRLQDEGIAFLLDARVEFAGNVSGGTRQTAAAANQIGFENDIDWNKLAAISGLTTHLIITNREGGNTGRGYGDTFLRPQDLNTTNGGNVVAHLTAVWAQETFAHGRLDLLVGRYPVGFDFASSPLYCSFMSKGFCGNPRALSNSASGFTTYPNPTWGSRVRIRPTTSIYLQFGLFSYESGLSNPYFYRSGWKFDSSDIVGEEFPVELGYEPVIGRGQLPGHYKVGFAYNNAPHKDLYYDMNGSAIALTGKQARVDHGETQWWVTADQMLLHHRPTPNSGLTLLCGVAGNDATTATYGTSAYAALVDRGFLSARPRDGAGLAFTYADFSPLLTQTQEVQMARHRSLANGATGIQTREKLVEVFYDIRIAQGLNFQPDAMYVIHPNAQRNIPNAFVLGFKIHAAF
>NZ_CP053709.1|WP_172443551.1|276105_277107_+|GntR-family-transcriptional-regulator
MEREERSLGGSGSSKLPSRLAAQIIERTRHLGLSAGAHLKEQELADALRVSRTPVRLALNVLASMDLIENRPNRGFFLKHPAEPQRGVPGLKPAPDGAAEDLLYLQISDDRLTGRIPVRVLETEVARRYGATRARIARIFARMAEEGWLTRLPGHGWEFQATLTSPSAYDQSYQFRMLIEPAALREAEYRLGPSAIEESRTRQKAMLEGGIEHWSRSETFAANAGFHETIVSGSNNPFLLEALRRVNRLRRLLEYRMHRNRARLVQECQEHLTLLDLIEKGDTSAAADFLYVHLARARVEKVGIAAVAEKLTEEAPPPDQKRRYGAKRMPPIG
>NZ_CP053709.1|WP_171836059.1|274528_275800_-|beta-propeller-fold-lactonase-family-protein
MNLARRSILKVAGLAILGSRPWIPPGEARAEPPMSAGMLRVELAFVGCRTSRARGAHGKGISTYVLEHDGSWRLMSITTGPDNPSFLCTDRTERFLYAVHGDGTSISAYRIGPDGMLMFLNSAGTDGRNPVYILPSLDNRFMLVANYATGSIAALPIDGDGRISPPTALLEFDAPQGPNPIEQTSPHPHQISFDPQGRYLYVPDKGSDRIYTLVFNPARPSFHLLHELETAAGSGPRHIAFHPTGKFAFVSYELSSQVGIYRRDLTSGRLTLAAPYSTLPPNVTIKNTAAEVLLSPDGGTVYVTNRGHDSIMVAAFHPQDGALASVRWITSGGHGPRFALFDSVANHLLVANELSDGVSVFGFRDDRYESLEMRHLVATDSPVCIVRASTGRKNHAEGRNGIGAAMRTGQATLLKREQLRGPS
>NZ_CP053709.1|WP_171836058.1|273476_274532_-|isocitrate/isopropylmalate-dehydrogenase-family-protein
MKISVLPGDDIGPEITEATLDVLQTVNAKFDLGLEFTNHVVGMASHKKTGTTLSDDVIADAKAADGVLLGPAGMSAYPPVAEGGRNIPGTIRKQLDLYANIRPARSRPGVPRAVPGLDCVIVRENTEGFYADRNLFHGYGEFMPTHDSALSLRLITATASRRIAEVAFRTAMQRRKHVTMVGKRHVMQVTDGLFMREVEAVAERYPDVALREIDIDAIAADLYSRPEAFDVILTTNMFGDILSNQANALAGGLGMAAALNVGDVHAAANAGHGSAPDIAGRGIANPVGLILSAAMLLRHLGSTREQPRYVDAADTIDRAIDAALANAASRTGDLGGKGNTASVARAVHAGL
>NZ_CP053709.1|WP_171836057.1|272048_273395_-|MFS-transporter
MRDMAVARIAEPATRSIPEYKRAERATFRRIAWRFVPLLTLCFLVNYIDRTNVGFAALSMNRDLGLSDVAFGWGAGVLFFGYCLFEVPSSLVQYRVGARLWLSRIMITWGLLSAATALSVGPKSFYGLRFLLGVAEAGFNPGVMFFFMAWFPSRYQGRILAWFQMAIPLSAVVAGPLSVGILSLNGTWGLRGWQWLFIVEGLPAIILGVAVLLVLKERPDQAGWLDRGEQAMVTAAIEAEPRRDASHSFGAVLRDPRVLLLAAIQLCFTLGAYAVGIWLPLILKQHHMTLTQIGLASAVPYALGCLATILWATASDRSGKRILNLAATCCLATIGLLISVWFHDAAISLLGLTLAIIGVTSTRGIFWSIPPQILQGRGAAGGLAFISSVGAFGGFLGPLTMGWLKHATGSFTTGLGVLAFIVGLSGILSLMLPTVNARYGGKATKARR
>NZ_CP053709.1|WP_171836056.1|271059_271962_-|amidohydrolase-family-protein
MDGPNFAVPEQACDSHQHVIGDPQRYPMSPTRTYTPPEAPLRALEAMHVEMRIQRSVLIQPSFYGTDNRCLLDALGQLGRTGRGIAVIDNAVTDATLETMRAAGVRGIRLNPKHGLDDARGLLESFRHAASRVAGLGWHIQTLLPFRTVLALADGFAVLPCTIALDHFAGYVPGTDDERQLETLFQLVRQGSCYVKLSAPYYAMGPGGDYFRLEGLVQGLVQTRSDRLLWGSDWPHTNGKRPPKISPTDVNPFLKIDDLSLFDLLGTWIPDSRTRDLVLVDNPASLFSFDADAAQEGRRG
>NZ_CP053709.1|WP_171836055.1|270403_271063_-|arylsulfatase
MTRIALIHATPVAMEPIADAFRRLWPEVDLANVMDDSLPTDLDRRGSLTGDIAQRILLLSRYAETLGSAGILFTCSAFGAAIRAAASRSDLPILRPNEAMFDEARVKGGRIGFMATFAPSVDGLIRELVEADTWVSQPIKPEVVCVPEALQALRDGDAIAHDRLLAQASERLRGFDSVMLTQFSMARARTAVAEKLGFEPLTAPDSAVRKMKLLVGNVP
>NZ_CP053709.1|WP_171836054.1|269091_270360_-|four-carbon-acid-sugar-kinase-family-protein
MILLGAIADDLTGATDLASTLRESGMRVVQTIGLPGNHLALPPVDAIVVALKSRSIEPELAVGQSVEAATWLRSLGAGKLIFKYCSTFDSTDRGNIGPVADALLNALGADLTVHCPAFPNNGRTVYQGHLFVGSDLLSESGMRHHPITPMTDSNLPRLLRRQASGDVSLVCHEIVSQGAPAIADAIAAARRAGVRHVVVDALSERHLIDIGLATADLVLVSGSSGIALGIPDSLARQGRFTPNRDPGELRRFAGPSAVLAGSCSRATLGQIAYFKSVPDAASYKLDVAALLDGRDPVDEVMAWASRRLGSKPILIYASETSENVQAILRGYGAGAVDRIEATLGRIAVELHRHGVTRFVVAGGETSGAVVHALGVEALVIGPSIDTGVPWTYATNAKPLAVALKSGNFGSEDFFARALAQQP
>NZ_CP053709.1|WP_171836050.1|268264_268423_+|hypothetical-protein
MYGHFYSVPYHLMREVIEARISDQTIELYHQNNRVASTIAPPAVSTVRCSRS
>NZ_CP053709.1|WP_171833921.1|281782_281938_-|hypothetical-protein
MGWLWPRRITLETDKGYNVTSFVHALRQRRMTPHITSRRRVSNLRDKRRKS
>NZ_CP053709.1|WP_171833920.1|282072_282435_-|hypothetical-protein
MSTKLPSISDDIRQPSKKITFDLKPREDLPDEAVTARAKEIGETWGSSTQIAPKEVPLPPAAPLVSVRFDSPDYLDKQLSIKAAELGVTKTYLILLALGKDGYRLEEVDLVKDRRRWKKR
>NZ_CP053709.1|WP_171833919.1|282431_283097_-|AAA-family-ATPase
MATISIASDKGGVSKTTSAILFAAELALDGYKVALVDADLNQQAVAFGLKADIVGLTVLGDVREDNILTMLRKAEAENEVVIVDLPGGSSTLALKALHRSHFVLVPSQASLPDVRAAMKTIAQIDDAQELARTPIARAILWTRVLSGFESRSARHVRESVEAEGQVPILRTQIMERAAFREIHITGKVPRQVDPSSSAAANVTAFAGELLTRIASLSEAAA
>NZ_CP053709.1|WP_171833928.1|283569_284667_-|site-specific-integrase
MLGPDPELETAIDLRPAPLKRPPALICAWFDDAADAVVPLHDGTLATARRAADAYARQAKATNTRRAYRAGVRAWCDWCDTHALKALPAQPEDIVAFLASERGRGCSVTTIKLRSASIRYLHHLAGVPLPTQHARVTETIAGIRRAAGLAGEHPRKKAAATLAVLIRILEPIGNDLVGLRDRALLLIGFAGALRRSELAAIRVEHLEPRAGGLQLTLPRSKGVRAGTSVTIAIPTGTTAYCPVKAVYRWMGAAGIREGAVFRRVWQPPAGGGHDQTSARSQILGSRAIDPRTVARIIQMRSEAVGFDPGVLGGHSLKRGALTEGMERGVHPTRLKQHGRHKSYAVLDEYLEMGDPFDGHPLAGVL
>NZ_CP053709.1|WP_171833927.1|284921_286019_+|hypothetical-protein
MPMIEAPSRHRMPAALAFAAAAVARLDQVVTGHPLCGAFLYRTRLEAVRRQAAVDGHSIDPWHLAAVIEGLRPRIDQSLEPYDRGSLIDAARYAFDGYQWLVRPTFEQEDAIRTAGLSFPLVTEAATLLAGASALHSWLEAGGTRQAGRAALLRFWMQQKIMRVPVPLTAAASLGADVPWAREAWIPIFLDTLAAEAGEGLQLLMTMERAWCDARQAVAGGRRHSRAGLAVDLLAACPVMSATSLACGLDMAVKNAAQLLDRFLAEGLVVEVTHRHKRRLFGLKALTPLREGTAPPRRPEPGRNRGRPRRQRKDESDEVAMPAPVLVLDPFQRRAVDYSGLEAAMAYADKAIDRAQRMLKSLEEN
>NZ_CP053709.1|WP_171833918.1|286656_287052_+|hypothetical-protein
MASPIDDGSDKHLDQAANLTDTSTASALLETCQPITHAEITEKLKDSGKVRSVILEAQDDSKQPKYAVFLLTNWRKGYCVLHVYWPARARLFRDLDRLLVLLRFEYGFTGTIALKRASDVSEGKRHWRVTL
>NZ_CP053709.1|WP_171833917.1|287142_287601_+|hypothetical-protein
MRESTNQDGRKVGNLGGYNTSLLSDCDELVGLIAASNSIDGPYNSIEAKRGSETDHDLAQVQQSRLIDRLEALALQITDRVAVSENEIEGKTQALNALASVDAWERDSLLALRRSIDRDRVDVVKVLHSPLPTRPQPSWVSRCFGLGRRHSG
>NZ_CP053709.1|WP_171833916.1|287897_288884_+|hypothetical-protein
MTDAASPLPSAAIASGKTLHPTMTADEIKQLPVLVHIATAGASLFDLGSSHGLRTIYARNGGQVMVFEVTPDGQATVAGLMTDISVEQLQMMGAADVTELPSLHGLRGFFLHNGAHYQVFYASPDRQRVIPGVMWDAGGKNLTQDQIAAIPGTVPTVTIGDTSADTTGTTTAAPILGGPALLAVAQGTTHGSIGNPSAPELWMFIDPQCSFSVRAMQQLEPAIAAGKVRLNLIPLSFLDAEDNGLSTRNALSLVSEPTDRMVTAWETGRSTGAAVPNAGARLGANMAAAASIQLKGTPTFVWRKMDGTVGRLDGVPPDVNALIASVGS
>NZ_CP053709.1|WP_171833915.1|288888_289440_+|hypothetical-protein
MDLYPPQKPAKKEGGSKPSFFRRNWRRARFVAGGPIATIGLQEISGGAKLIDTLFGVVRGGPQADGRLKTNADGTIDLIATAFCFGVSVEEMVQRVRARREQTVRAAYTMFGLGCLSLLLWLYGVLQIRMNSGRILSAVEFLPFCVLFFLLAFKSGWMNWQLRTLRMGSAIAYLQTTEPFLPQ
>NZ_CP053709.1|WP_171833914.1|289442_289754_-|hypothetical-protein
MRSSSALVGLLLLGLTACATPPNLKSASDYNAPSAPPIKHPLYDPYAPYGQANATWRPPVFDRAGTIVRPVDPSVDQGRPDYEHAEWATGAAGGSALAPPGTF

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP053709_1	1.1\|281152\|46\|NZ_CP053709\|CRT	281152-281197	46	NZ_CP053709	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence	281152-281197	0	1.0
NZ_CP053709_1	1.2\|281222\|49\|NZ_CP053709\|CRT	281222-281270	49	NZ_CP053709	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence	281222-281270	0	1.0
NZ_CP053709_1	1.3\|281295\|48\|NZ_CP053709\|CRT	281295-281342	48	NZ_CP053709	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence	281295-281342	0	1.0
NZ_CP053709_1	1.4\|281367\|44\|NZ_CP053709\|CRT	281367-281410	44	NZ_CP053709	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence	281367-281410	0	1.0
NZ_CP053709_1	1.5\|281435\|47\|NZ_CP053709\|CRT	281435-281481	47	NZ_CP053709	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence	281435-281481	0	1.0
NZ_CP053709_1	1.6\|281506\|46\|NZ_CP053709\|CRT	281506-281551	46	NZ_CP053709	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence	281506-281551	0	1.0
NZ_CP053709_1	1.7\|281576\|50\|NZ_CP053709\|CRT	281576-281625	50	NZ_CP053709	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence	281576-281625	0	1.0
NZ_CP053709_1	1.8\|281650\|51\|NZ_CP053709\|CRT	281650-281700	51	NZ_CP053709	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence	281650-281700	0	1.0
NZ_CP053709_1	1.9\|281223\|41\|NZ_CP053709\|CRISPRCasFinder	281223-281263	41	NZ_CP053709	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence	281223-281263	0	1.0
NZ_CP053709_1	1.10\|281296\|40\|NZ_CP053709\|CRISPRCasFinder	281296-281335	40	NZ_CP053709	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence	281296-281335	0	1.0
NZ_CP053709_1	1.11\|281368\|36\|NZ_CP053709\|CRISPRCasFinder	281368-281403	36	NZ_CP053709	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence	281368-281403	0	1.0
NZ_CP053709_1	1.12\|281436\|39\|NZ_CP053709\|CRISPRCasFinder	281436-281474	39	NZ_CP053709	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence	281436-281474	0	1.0
NZ_CP053709_1	1.13\|281507\|38\|NZ_CP053709\|CRISPRCasFinder	281507-281544	38	NZ_CP053709	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence	281507-281544	0	1.0
NZ_CP053709_1	1.14\|281577\|42\|NZ_CP053709\|CRISPRCasFinder	281577-281618	42	NZ_CP053709	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence	281577-281618	0	1.0
NZ_CP053709_1	1.15\|281651\|43\|NZ_CP053709\|CRISPRCasFinder	281651-281693	43	NZ_CP053709	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence	281651-281693	0	1.0
NZ_CP053709_1	1.11\|281368\|36\|NZ_CP053709\|CRISPRCasFinder	281368-281403	36	NZ_CP025014	Rhizobium leguminosarum strain Norway plasmid pRLN2, complete sequence	294337-294372	6	0.833

1. spacer 1.1|281152|46|NZ_CP053709|CRT matches to NZ_CP053709 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

tccgccacaggatacacgcgtttccgccataggatacacgcgttcg	CRISPR spacer
tccgccacaggatacacgcgtttccgccataggatacacgcgttcg	Protospacer
**********************************************

2. spacer 1.2|281222|49|NZ_CP053709|CRT matches to NZ_CP053709 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

ttcgcgtttcctagagttaccgcgttgatctataggggtttttatgact	CRISPR spacer
ttcgcgtttcctagagttaccgcgttgatctataggggtttttatgact	Protospacer
*************************************************

3. spacer 1.3|281295|48|NZ_CP053709|CRT matches to NZ_CP053709 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

tcattatattcacaaccttatggatagcccagaggtccgggatcaatc	CRISPR spacer
tcattatattcacaaccttatggatagcccagaggtccgggatcaatc	Protospacer
************************************************

4. spacer 1.4|281367|44|NZ_CP053709|CRT matches to NZ_CP053709 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

cgcgacgatgggcgatgaggtgtgcgagcggtctggtctcgatc	CRISPR spacer
cgcgacgatgggcgatgaggtgtgcgagcggtctggtctcgatc	Protospacer
********************************************

5. spacer 1.5|281435|47|NZ_CP053709|CRT matches to NZ_CP053709 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

ccttcgctatttctagctgagtcctcccggctgactcagcgtcaatc	CRISPR spacer
ccttcgctatttctagctgagtcctcccggctgactcagcgtcaatc	Protospacer
***********************************************

6. spacer 1.6|281506|46|NZ_CP053709|CRT matches to NZ_CP053709 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

ctcggctgttcctggctgagccctctcggctgattcaacctcaacc	CRISPR spacer
ctcggctgttcctggctgagccctctcggctgattcaacctcaacc	Protospacer
**********************************************

7. spacer 1.7|281576|50|NZ_CP053709|CRT matches to NZ_CP053709 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

tcccagctttcccttggagttaagtcgcggcggcttctctgggctcaatc	CRISPR spacer
tcccagctttcccttggagttaagtcgcggcggcttctctgggctcaatc	Protospacer
**************************************************

8. spacer 1.8|281650|51|NZ_CP053709|CRT matches to NZ_CP053709 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

tgcccgcctccacttgggggttaagtcccggcgggcagtctcggctcaatc	CRISPR spacer
tgcccgcctccacttgggggttaagtcccggcgggcagtctcggctcaatc	Protospacer
***************************************************

9. spacer 1.9|281223|41|NZ_CP053709|CRISPRCasFinder matches to NZ_CP053709 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

tcgcgtttcctagagttaccgcgttgatctataggggtttt	CRISPR spacer
tcgcgtttcctagagttaccgcgttgatctataggggtttt	Protospacer
*****************************************

10. spacer 1.10|281296|40|NZ_CP053709|CRISPRCasFinder matches to NZ_CP053709 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

cattatattcacaaccttatggatagcccagaggtccggg	CRISPR spacer
cattatattcacaaccttatggatagcccagaggtccggg	Protospacer
****************************************

11. spacer 1.11|281368|36|NZ_CP053709|CRISPRCasFinder matches to NZ_CP053709 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

gcgacgatgggcgatgaggtgtgcgagcggtctggt	CRISPR spacer
gcgacgatgggcgatgaggtgtgcgagcggtctggt	Protospacer
************************************

12. spacer 1.12|281436|39|NZ_CP053709|CRISPRCasFinder matches to NZ_CP053709 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

cttcgctatttctagctgagtcctcccggctgactcagc	CRISPR spacer
cttcgctatttctagctgagtcctcccggctgactcagc	Protospacer
***************************************

13. spacer 1.13|281507|38|NZ_CP053709|CRISPRCasFinder matches to NZ_CP053709 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

tcggctgttcctggctgagccctctcggctgattcaac	CRISPR spacer
tcggctgttcctggctgagccctctcggctgattcaac	Protospacer
**************************************

14. spacer 1.14|281577|42|NZ_CP053709|CRISPRCasFinder matches to NZ_CP053709 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

cccagctttcccttggagttaagtcgcggcggcttctctggg	CRISPR spacer
cccagctttcccttggagttaagtcgcggcggcttctctggg	Protospacer
******************************************

15. spacer 1.15|281651|43|NZ_CP053709|CRISPRCasFinder matches to NZ_CP053709 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

gcccgcctccacttgggggttaagtcccggcgggcagtctcgg	CRISPR spacer
gcccgcctccacttgggggttaagtcccggcgggcagtctcgg	Protospacer
*******************************************

16. spacer 1.11|281368|36|NZ_CP053709|CRISPRCasFinder matches to NZ_CP025014 (Rhizobium leguminosarum strain Norway plasmid pRLN2, complete sequence) position: , mismatch: 6, identity: 0.833

gcgac-gatgggcgatgaggtgtgcgagcggtctggt	CRISPR spacer
-cgacagatgggcgatgaggagtgggagcggtccgtc	Protospacer
 **** ************** *** ********.* .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

8626 : 59509

Bacillus_virus(17.65%)

integrase,transposase

attL 20315:20334|attR 68383:68402

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_171836533.1\|8626_9088_+\|transposase	IS3 family transposase	Q8W6R2	Burkholderia_virus	1.0e-05	33.6
WP_171836534.1\|9084_9288_+	hypothetical protein	NA	NA	NA	NA
WP_171836535.1\|10698_11712_+	mechanosensitive ion channel	NA	NA	NA	NA
WP_171836536.1\|11719_11932_-	hypothetical protein	NA	NA	NA	NA
WP_171836537.1\|12053_12491_-\|transposase	transposase	NA	NA	NA	NA
WP_171836538.1\|12436_12586_-	hypothetical protein	NA	NA	NA	NA
WP_171836539.1\|12582_12720_-	hypothetical protein	NA	NA	NA	NA
WP_171836540.1\|12741_13074_-	hypothetical protein	NA	NA	NA	NA
WP_171836541.1\|13216_13390_-	hypothetical protein	NA	NA	NA	NA
WP_172443519.1\|13388_13661_+	hypothetical protein	NA	NA	NA	NA
WP_171836543.1\|14163_16254_+	catalase	A0A2K9L572	Tupanvirus	8.3e-132	45.8
WP_171836544.1\|17950_20134_+	EAL domain-containing protein	G3MA91	Bacillus_virus	2.9e-26	37.9
20315:20334	attL	NA	NA	NA	NA
WP_172443520.1\|20572_21375_-\|transposase	IS5 family transposase	A0A0M5M147	Mycobacterium_phage	9.0e-26	33.0
WP_172443521.1\|21383_21545_+	hypothetical protein	NA	NA	NA	NA
WP_171837635.1\|21820_22192_+	response regulator	NA	NA	NA	NA
WP_171837634.1\|22275_22560_-	hypothetical protein	NA	NA	NA	NA
WP_171837633.1\|22712_22880_-	hypothetical protein	NA	NA	NA	NA
WP_171837632.1\|24750_25155_+	hypothetical protein	NA	NA	NA	NA
WP_172443522.1\|25520_26174_-	plasmid pRiA4b ORF-3 family protein	A0A2H4PDG5	Mycobacterium_phage	8.9e-16	31.0
WP_172443523.1\|26239_27892_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.3e-107	43.6
WP_172443524.1\|27955_28303_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.2e-29	56.1
WP_172443525.1\|28299_28644_-\|transposase	transposase	NA	NA	NA	NA
WP_171837651.1\|28701_29034_-	hypothetical protein	NA	NA	NA	NA
WP_171837652.1\|29076_29274_-	hypothetical protein	NA	NA	NA	NA
WP_172443526.1\|29934_30537_-	YecA family protein	NA	NA	NA	NA
WP_172443527.1\|30533_32081_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.5e-93	40.9
WP_171837313.1\|32123_32594_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_171837312.1\|32491_32956_-\|transposase	transposase	NA	NA	NA	NA
WP_171837311.1\|33026_33323_+	hypothetical protein	NA	NA	NA	NA
WP_171837310.1\|33324_33492_+	hypothetical protein	NA	NA	NA	NA
WP_172443528.1\|33700_33922_-	hypothetical protein	NA	NA	NA	NA
WP_171837309.1\|34021_34168_+	hypothetical protein	NA	NA	NA	NA
WP_171837308.1\|34451_34829_-	hypothetical protein	NA	NA	NA	NA
WP_171837307.1\|34864_35065_+	hypothetical protein	NA	NA	NA	NA
WP_171837306.1\|35108_35324_-	energy transducer TonB	NA	NA	NA	NA
WP_171837305.1\|36850_38782_-	EAL domain-containing protein	G3MA91	Bacillus_virus	1.6e-20	35.8
WP_171837304.1\|39239_39692_-	response regulator	W8CYM9	Bacillus_phage	2.2e-05	34.2
WP_171837303.1\|39838_41971_-	EAL domain-containing protein	G3MA91	Bacillus_virus	2.6e-24	40.5
WP_171837302.1\|42300_42630_-	hypothetical protein	NA	NA	NA	NA
WP_171837301.1\|43138_43609_-	hypothetical protein	NA	NA	NA	NA
WP_171837300.1\|43842_44829_-\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	7.6e-43	35.9
WP_171837299.1\|46060_46795_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	1.3e-60	49.0
WP_171837314.1\|46805_48326_-\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	3.7e-121	46.4
WP_172443529.1\|48578_49571_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_172443530.1\|49691_50449_-\|transposase	IS5 family transposase	A0A0N9SJT9	Paenibacillus_phage	2.3e-07	34.4
WP_171837393.1\|50585_51185_-	hypothetical protein	NA	NA	NA	NA
WP_171837394.1\|52726_53905_+	plasmid replication protein	NA	NA	NA	NA
WP_171837395.1\|53991_54705_-	hypothetical protein	NA	NA	NA	NA
WP_171837396.1\|54704_55349_-	ParA family protein	M4HZI5	Mycobacterium_phage	4.7e-09	33.3
WP_171837397.1\|56683_57817_+	hypothetical protein	NA	NA	NA	NA
WP_171837398.1\|57893_58307_-	hypothetical protein	NA	NA	NA	NA
WP_171837408.1\|58411_59509_-\|integrase	site-specific integrase	Q5QBN6	Enterobacteria_phage	1.8e-16	28.8
68383:68402	attR	NA	NA	NA	NA

DBSCAN-SWA_2

64259 : 120898

Stx2-converting_phage(33.33%)

integrase,transposase

attL 82128:82143|attR 125419:125434

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_171837409.1\|64259_65231_-\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	1.6e-40	35.2
WP_171837403.1\|66219_67194_+\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	2.5e-46	39.5
WP_171837404.1\|67272_68061_-	sterol desaturase family protein	NA	NA	NA	NA
WP_171837405.1\|68223_68379_-	hypothetical protein	NA	NA	NA	NA
WP_171837406.1\|68437_68617_-	hypothetical protein	NA	NA	NA	NA
WP_171837407.1\|70714_70855_+	hypothetical protein	NA	NA	NA	NA
WP_172443485.1\|73514_74624_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_171837990.1\|75007_76033_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_172443485.1\|76322_77432_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_171837856.1\|77639_79445_-	glycoside hydrolase family 15 protein	NA	NA	NA	NA
WP_171837855.1\|79483_80224_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_171837854.1\|80232_81747_-	glucose-6-phosphate dehydrogenase	M4SP85	Cyanophage	1.3e-73	36.2
WP_171837853.1\|81798_82206_-	cytochrome o ubiquinol oxidase subunit IV	NA	NA	NA	NA
82128:82143	attL	NA	NA	NA	NA
WP_171837852.1\|82202_82880_-	cytochrome c oxidase subunit 3	NA	NA	NA	NA
WP_171837851.1\|84892_85783_-	ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_171837850.1\|86125_86272_+	hypothetical protein	NA	NA	NA	NA
WP_171837849.1\|86496_87411_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_171837848.1\|87608_89228_-	GMC family oxidoreductase N-terminal domain-containing protein	NA	NA	NA	NA
WP_171837859.1\|89312_90722_-	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_171837858.1\|90768_91908_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_171837857.1\|91917_93405_-	MFS transporter	NA	NA	NA	NA
WP_171837846.1\|95294_95492_+	hypothetical protein	NA	NA	NA	NA
WP_171837845.1\|95536_96577_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_172443531.1\|96913_97312_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_172443532.1\|97447_97621_+	hypothetical protein	NA	NA	NA	NA
WP_172443560.1\|97585_99121_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.9e-113	45.5
WP_172443533.1\|99211_99559_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	3.0e-34	61.7
WP_171837828.1\|99555_99960_-\|transposase	transposase	NA	NA	NA	NA
WP_172443534.1\|100079_100421_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_171836571.1\|100653_101202_+	recombinase family protein	E5FFF9	Burkholderia_phage	5.3e-30	40.4
WP_171836583.1\|101219_102869_+\|transposase	transposase family protein	Q5ZR04	Pseudomonas_phage	2.2e-10	24.4
WP_171836572.1\|102862_103834_+	AAA family ATPase	A4JWN1	Burkholderia_virus	1.6e-05	26.9
WP_171836573.1\|103962_104652_+	BID domain-containing protein	NA	NA	NA	NA
WP_171836574.1\|104795_105227_-	VOC family protein	NA	NA	NA	NA
WP_171836575.1\|105332_105884_-	cupin domain-containing protein	NA	NA	NA	NA
WP_171836576.1\|105905_106820_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_171836577.1\|106831_107923_-	alkene reductase	NA	NA	NA	NA
WP_171836578.1\|107970_108711_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_171836579.1\|109721_110678_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_171836580.1\|110922_111660_-	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	2.3e-20	32.3
WP_171836581.1\|111734_112325_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_172443535.1\|112924_113737_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_171837828.1\|113695_114100_+\|transposase	transposase	NA	NA	NA	NA
WP_172443533.1\|114096_114444_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	3.0e-34	61.7
WP_172443560.1\|114534_116070_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.9e-113	45.5
WP_171837295.1\|116774_117794_+\|integrase	tyrosine-type recombinase/integrase	Q71TG5	Escherichia_phage	5.0e-21	29.1
WP_171837294.1\|118385_118856_+	DUF2384 domain-containing protein	NA	NA	NA	NA
WP_171837293.1\|118852_119359_+	RES domain-containing protein	NA	NA	NA	NA
WP_171837292.1\|119566_120898_-\|transposase	ISNCY family transposase	NA	NA	NA	NA
125419:125434	attR	NA	NA	NA	NA

DBSCAN-SWA_3

131896 : 183845

Escherichia_phage(18.75%)

protease,integrase,transposase

attL 125020:125037|attR 190339:190356

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
125020:125037	attL	NA	NA	NA	NA
WP_172443520.1\|131896_132699_-\|transposase	IS5 family transposase	A0A0M5M147	Mycobacterium_phage	9.0e-26	33.0
WP_171836555.1\|132844_133555_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	4.2e-19	33.5
WP_171836558.1\|133682_133925_+\|transposase	transposase	NA	NA	NA	NA
WP_171836554.1\|133944_134487_+\|transposase	transposase	Q9MCT5	Escherichia_phage	7.7e-13	51.3
WP_171836553.1\|135029_136162_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	9.0e-48	41.2
WP_171836557.1\|137255_137477_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_171836552.1\|137477_137768_-	hypothetical protein	NA	NA	NA	NA
WP_171836551.1\|137880_138492_+	chemotaxis protein CheB	NA	NA	NA	NA
WP_171836550.1\|138492_139491_+	PAS domain-containing protein	NA	NA	NA	NA
WP_172443542.1\|139596_140922_-	PAS domain S-box protein	NA	NA	NA	NA
WP_171836548.1\|141058_141580_-	hypothetical protein	NA	NA	NA	NA
WP_171836547.1\|141590_141989_-	PIN domain-containing protein	NA	NA	NA	NA
WP_171836546.1\|141985_142237_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_171836545.1\|142313_142502_+	hypothetical protein	NA	NA	NA	NA
WP_171837391.1\|142667_144200_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	3.3e-117	44.3
WP_171837390.1\|144211_144979_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	3.2e-57	47.5
WP_171837800.1\|145228_145534_+\|protease	ATP-dependent Clp protease adapter ClpS	NA	NA	NA	NA
WP_171837799.1\|145934_148745_-	EAL domain-containing protein	B5LWN8	Feldmannia_species_virus	4.5e-24	30.1
WP_172443529.1\|149087_150080_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_172443543.1\|150177_151476_+\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_172443544.1\|151521_152514_-\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_171837688.1\|152630_153385_-\|transposase	IS5 family transposase	A0A0N9SJT9	Paenibacillus_phage	1.7e-10	37.2
WP_171837687.1\|154200_154611_-	dioxygenase	NA	NA	NA	NA
WP_171837686.1\|154650_156309_-	gamma-glutamyltransferase	NA	NA	NA	NA
WP_171837685.1\|156532_157459_+	glyoxylate/hydroxypyruvate reductase A	NA	NA	NA	NA
WP_171837691.1\|157517_159122_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_171837684.1\|159118_160072_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_171837683.1\|160077_160965_+	ABC transporter permease subunit	NA	NA	NA	NA
WP_171837690.1\|162111_163248_+	hypothetical protein	NA	NA	NA	NA
WP_171837682.1\|163247_164351_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA
WP_171837681.1\|164347_165466_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_171837680.1\|165465_167076_+	DUF885 family protein	NA	NA	NA	NA
WP_171837689.1\|167117_168131_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	9.9e-14	32.4
WP_171837679.1\|168127_169108_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	2.5e-22	33.2
WP_171837678.1\|169304_172112_+	TonB-dependent receptor	A0A0P0I887	Acinetobacter_phage	3.2e-30	24.2
WP_171837677.1\|172879_173128_+	hypothetical protein	NA	NA	NA	NA
WP_171837676.1\|173130_173382_-	hypothetical protein	NA	NA	NA	NA
WP_171837675.1\|173393_174254_-	DNA/RNA non-specific endonuclease	H6X497	Enterobacteria_phage	9.0e-24	32.5
WP_171837674.1\|174343_177616_-	error-prone DNA polymerase	Q8W6C3	Saccharomonospora_phage	4.4e-87	26.5
WP_171837673.1\|177626_177866_-	hypothetical protein	NA	NA	NA	NA
WP_171837672.1\|177882_178086_-	hypothetical protein	NA	NA	NA	NA
WP_172443561.1\|178212_179475_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	7.5e-43	35.5
WP_172443545.1\|179537_180332_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	6.1e-51	45.9
WP_171836871.1\|180384_181740_-	DNA polymerase Y family protein	NA	NA	NA	NA
WP_171836872.1\|181657_182419_-	damage-inducible mutagenesis protein	NA	NA	NA	NA
WP_171836873.1\|182621_183845_-\|integrase	tyrosine-type recombinase/integrase	A0A2H4JCB7	uncultured_Caudovirales_phage	1.3e-15	24.5
190339:190356	attR	NA	NA	NA	NA

DBSCAN-SWA_4

250730 : 259042

Stx2-converting_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_172443547.1\|250730_251345_+\|transposase	transposase	NA	NA	NA	NA
WP_171837086.1\|251307_252951_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.4e-112	44.7
WP_171837087.1\|253011_253359_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	3.7e-29	55.1
WP_172443548.1\|253355_253766_-\|transposase	transposase	NA	NA	NA	NA
WP_172443549.1\|253833_254172_-\|transposase	transposase	NA	NA	NA	NA
WP_171837953.1\|254400_255372_-	FCD domain-containing protein	NA	NA	NA	NA
WP_171837952.1\|255617_256151_-\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	4.6e-10	38.4
WP_171837951.1\|256287_256698_+	hypothetical protein	NA	NA	NA	NA
WP_171837950.1\|256797_257565_-	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_171837419.1\|258367_259042_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	1.8e-48	48.3

DBSCAN-SWA_5

352074 : 392501

Escherichia_phage(11.11%)

integrase,transposase

attL 351950:351984|attR 355621:355655

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
351950:351984	attL	NA	NA	NA	NA
WP_171833848.1\|352074_353079_-\|integrase	tyrosine-type recombinase/integrase	A0A2L1IV36	Escherichia_phage	4.1e-12	33.9
WP_171833847.1\|353075_353990_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_171833846.1\|353983_355528_-\|integrase	tyrosine-type recombinase/integrase	A7XX23	Thermus_virus	2.4e-11	26.2
WP_171833845.1\|355628_358958_-	hypothetical protein	I6NW45	Burkholderia_virus	4.4e-220	42.8
355621:355655	attR	NA	NA	NA	NA
WP_171833844.1\|359301_359853_-	GcrA cell cycle regulator	NA	NA	NA	NA
WP_171833843.1\|359839_360262_-	hypothetical protein	NA	NA	NA	NA
WP_171833842.1\|360402_360741_-	hypothetical protein	NA	NA	NA	NA
WP_171833841.1\|360740_361706_-	DUF1738 domain-containing protein	A0A1V0EEV1	Caulobacter_phage	6.5e-47	36.7
WP_171833840.1\|361987_362725_-	hypothetical protein	NA	NA	NA	NA
WP_171833839.1\|362796_363141_-	hypothetical protein	NA	NA	NA	NA
WP_171833838.1\|363230_363521_-	hypothetical protein	NA	NA	NA	NA
WP_171833837.1\|363595_364180_-	hypothetical protein	NA	NA	NA	NA
WP_171833836.1\|364251_364575_-	hypothetical protein	NA	NA	NA	NA
WP_171833835.1\|364625_364772_-	hypothetical protein	NA	NA	NA	NA
WP_171833834.1\|365245_365530_+	hypothetical protein	NA	NA	NA	NA
WP_171833833.1\|365526_365904_+	hypothetical protein	NA	NA	NA	NA
WP_171833832.1\|365935_368059_+	DUF262 domain-containing protein	NA	NA	NA	NA
WP_171833923.1\|368070_368250_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_171833831.1\|368744_369239_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_171833830.1\|369361_372127_-	DEAD/DEAH box helicase family protein	A0A2H4J643	uncultured_Caudovirales_phage	5.3e-17	24.8
WP_171833829.1\|372133_375262_-	DUF1156 domain-containing protein	NA	NA	NA	NA
WP_171833828.1\|375251_375899_-	DUF3780 domain-containing protein	A0A1P8DTE9	Proteus_phage	8.5e-27	43.9
WP_171833827.1\|375895_379018_-	DUF499 domain-containing protein	NA	NA	NA	NA
WP_171833826.1\|379340_379595_-	hypothetical protein	NA	NA	NA	NA
WP_171833825.1\|379603_380449_-	DNA/RNA non-specific endonuclease	H6X497	Enterobacteria_phage	5.7e-23	32.1
WP_171833824.1\|380542_382627_-	UvrD-helicase domain-containing protein	A7KV33	Bacillus_phage	4.5e-93	34.8
WP_171833922.1\|383542_384466_-	DUF3991 domain-containing protein	NA	NA	NA	NA
WP_171833823.1\|385212_386124_+	hypothetical protein	NA	NA	NA	NA
WP_171833822.1\|386233_386626_-	PIN domain-containing protein	NA	NA	NA	NA
WP_171833821.1\|386622_386865_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_171837741.1\|388261_389617_-\|transposase	IS110 family transposase	Q9JMN8	Wolbachia_phage	3.5e-107	45.3
WP_171837740.1\|389808_390126_-\|transposase	transposase	NA	NA	NA	NA
WP_171837739.1\|390180_390480_-	hypothetical protein	NA	NA	NA	NA
WP_171837738.1\|390616_390784_-	hypothetical protein	NA	NA	NA	NA
WP_172443544.1\|391508_392501_-\|transposase	IS481 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP053711

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

68758 : 172578

111

Stx2-converting_phage(25.81%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_172443508.1\|68758_70282_-\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	1.9e-08	24.7
WP_171836903.1\|70513_71179_-	hypothetical protein	NA	NA	NA	NA
WP_171836902.1\|71470_71893_-\|transposase	transposase	NA	NA	NA	NA
WP_171836901.1\|72155_72524_-	hypothetical protein	NA	NA	NA	NA
WP_171836900.1\|72624_73578_+	cupin domain-containing protein	NA	NA	NA	NA
WP_171836899.1\|73740_74148_-	VOC family protein	NA	NA	NA	NA
WP_171836898.1\|74761_75493_-	hypothetical protein	NA	NA	NA	NA
WP_171836897.1\|76047_77409_-	HAMP domain-containing protein	NA	NA	NA	NA
WP_171836906.1\|77405_78119_-	response regulator	W8CYM9	Bacillus_phage	3.1e-30	33.3
WP_171836896.1\|78413_79169_+	VacJ family lipoprotein	NA	NA	NA	NA
WP_171836895.1\|79353_79641_+	hypothetical protein	NA	NA	NA	NA
WP_171836894.1\|79661_79895_+	hypothetical protein	NA	NA	NA	NA
WP_171836893.1\|80237_80591_-	hypothetical protein	NA	NA	NA	NA
WP_171836892.1\|80664_82206_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	1.5e-138	50.3
WP_171836891.1\|83084_83756_-	hypothetical protein	NA	NA	NA	NA
WP_171836890.1\|85744_85951_+	hypothetical protein	NA	NA	NA	NA
WP_171836889.1\|86297_88295_+	EAL domain-containing protein	G3MA91	Bacillus_virus	1.1e-21	36.7
WP_171836905.1\|89458_90073_-	TetR family transcriptional regulator	NA	NA	NA	NA
WP_171836904.1\|90178_90916_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	1.2e-16	35.4
WP_171836888.1\|91024_91312_+	DUF1330 domain-containing protein	NA	NA	NA	NA
WP_171837916.1\|91784_92858_-\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_172443590.1\|93029_93731_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	2.4e-43	45.6
WP_172443591.1\|93727_94042_-\|transposase	transposase	NA	NA	NA	NA
WP_171837377.1\|94141_94966_+\|transposase	IS5 family transposase	A0A0N9SHJ4	Paenibacillus_phage	1.4e-10	44.6
WP_171837378.1\|95212_95485_+	PRC-barrel domain-containing protein	NA	NA	NA	NA
WP_171837379.1\|95632_96718_-\|transposase	IS5 family transposase	A0A1X9I5T2	Streptococcus_phage	1.1e-10	28.2
WP_172443600.1\|99102_100674_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.7e-111	44.4
WP_171837380.1\|100728_101076_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	6.6e-34	60.7
WP_172443453.1\|101285_102332_-\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	3.4e-49	38.1
WP_171836887.1\|102341_102593_-\|transposase	transposase	NA	NA	NA	NA
WP_171836886.1\|102764_103034_+	HU family DNA-binding protein	NA	NA	NA	NA
WP_171836885.1\|103492_103846_-	hypothetical protein	NA	NA	NA	NA
WP_171836884.1\|104203_104377_+	hypothetical protein	NA	NA	NA	NA
WP_171836883.1\|104433_104760_+	hypothetical protein	NA	NA	NA	NA
WP_171837631.1\|105091_105745_-	plasmid pRiA4b ORF-3 family protein	NA	NA	NA	NA
WP_172443592.1\|105810_107463_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.1e-107	43.8
WP_172443524.1\|107526_107874_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.2e-29	56.1
WP_172443593.1\|107870_108215_-\|transposase	transposase	NA	NA	NA	NA
WP_171837932.1\|108261_109866_-	GAF domain-containing protein	Q6XLU9	Feldmannia_irregularis_virus	1.3e-15	33.5
WP_171837931.1\|109900_110239_-	hypothetical protein	NA	NA	NA	NA
WP_171837930.1\|110385_111063_-	SOS response-associated peptidase family protein	V9IQW7	Stenotrophomonas_phage	2.6e-18	32.5
WP_171837929.1\|111091_111340_+	EAL domain-containing protein	NA	NA	NA	NA
WP_171837928.1\|113406_113634_+	hypothetical protein	NA	NA	NA	NA
WP_171837391.1\|114022_115555_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	3.3e-117	44.3
WP_171837390.1\|115566_116334_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	3.2e-57	47.5
WP_172443601.1\|116487_117234_+\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	9.2e-41	39.4
WP_171837777.1\|117365_118373_+	PAS domain-containing protein	NA	NA	NA	NA
WP_171837775.1\|118380_118752_-	response regulator	NA	NA	NA	NA
WP_171837774.1\|118869_119944_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_172443594.1\|120140_120419_+	hypothetical protein	NA	NA	NA	NA
WP_171837773.1\|120601_121015_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_171837772.1\|121120_122023_+	NAD(P)H-binding protein	NA	NA	NA	NA
WP_171837771.1\|121991_122204_+	hypothetical protein	NA	NA	NA	NA
WP_171837912.1\|125121_125868_+	response regulator	NA	NA	NA	NA
WP_171837911.1\|126125_126524_+	hypothetical protein	NA	NA	NA	NA
WP_171837910.1\|126563_126743_+	hypothetical protein	NA	NA	NA	NA
WP_171837909.1\|127270_127534_-	hypothetical protein	NA	NA	NA	NA
WP_171837086.1\|128287_129931_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.4e-112	44.7
WP_171837087.1\|129991_130339_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	3.7e-29	55.1
WP_172443548.1\|130335_130746_-\|transposase	transposase	NA	NA	NA	NA
WP_171837965.1\|130796_131354_-	cation:proton antiporter	NA	NA	NA	NA
WP_172443595.1\|131360_131705_-	cation:proton antiporter	NA	NA	NA	NA
WP_171837967.1\|131732_132260_-	cation:proton antiporter	NA	NA	NA	NA
WP_171837968.1\|132451_132649_+	hypothetical protein	NA	NA	NA	NA
WP_171837969.1\|133274_133475_-	hypothetical protein	NA	NA	NA	NA
WP_171837288.1\|133904_134684_-	ATP-binding protein	A0A2L1IVB6	Escherichia_phage	9.0e-31	34.9
WP_172443596.1\|134673_136197_-\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	3.6e-23	27.5
WP_171834199.1\|136660_137989_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
WP_171834162.1\|138235_138850_-	NAD(P)H-dependent oxidoreductase	NA	NA	NA	NA
WP_171834163.1\|138874_139666_-	dioxygenase	NA	NA	NA	NA
WP_171834164.1\|139742_140639_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_171834165.1\|140843_141251_-	septal ring lytic transglycosylase RlpA family lipoprotein	F5B3X9	Synechococcus_phage	2.5e-08	46.6
WP_171834166.1\|141499_141787_-	hypothetical protein	NA	NA	NA	NA
WP_171834167.1\|141780_142611_-\|transposase	transposase	NA	NA	NA	NA
WP_171834168.1\|142661_143081_-\|transposase	transposase family protein	NA	NA	NA	NA
WP_171834169.1\|143257_143662_+\|transposase	transposase	NA	NA	NA	NA
WP_171834170.1\|143703_143841_+\|transposase	transposase	NA	NA	NA	NA
WP_171834171.1\|144155_144620_-	hypothetical protein	NA	NA	NA	NA
WP_171834172.1\|144616_144994_-	hypothetical protein	NA	NA	NA	NA
WP_171834173.1\|145074_145548_-	hypothetical protein	NA	NA	NA	NA
WP_171834174.1\|145532_145790_-	hypothetical protein	NA	NA	NA	NA
WP_171834175.1\|145800_146154_-	hypothetical protein	NA	NA	NA	NA
WP_171834176.1\|146386_146635_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_171834177.1\|146746_147136_+	hypothetical protein	NA	NA	NA	NA
WP_171834178.1\|147137_147305_+	hypothetical protein	NA	NA	NA	NA
WP_171834179.1\|147301_147505_+	hypothetical protein	NA	NA	NA	NA
WP_171834180.1\|147717_147954_+	hypothetical protein	NA	NA	NA	NA
WP_171834181.1\|147953_148358_+	hypothetical protein	NA	NA	NA	NA
WP_171834182.1\|148357_148729_+	hypothetical protein	NA	NA	NA	NA
WP_171834183.1\|148891_149194_+	hypothetical protein	NA	NA	NA	NA
WP_171834200.1\|149839_151267_+	DUF4331 family protein	NA	NA	NA	NA
WP_171834184.1\|151294_152572_+	hypothetical protein	NA	NA	NA	NA
WP_171834185.1\|152568_153714_+	HupE/UreJ family protein	NA	NA	NA	NA
WP_171834201.1\|153699_154422_-	SOS response-associated peptidase family protein	A0A291AUP1	Sinorhizobium_phage	1.0e-41	45.0
WP_171834186.1\|154463_154811_-	septal ring lytic transglycosylase RlpA family lipoprotein	NA	NA	NA	NA
WP_171834187.1\|154809_155643_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	9.0e-21	55.6
WP_171834188.1\|155715_157302_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	1.2e-93	40.4
WP_171834189.1\|157609_157795_-	hypothetical protein	NA	NA	NA	NA
WP_171834190.1\|157976_158378_-	response regulator	NA	NA	NA	NA
WP_171834191.1\|158380_159844_-	AAA family ATPase	NA	NA	NA	NA
WP_171834202.1\|159840_160542_-	HAMP domain-containing histidine kinase	B5LWN0	Feldmannia_species_virus	1.4e-14	28.0
WP_171834192.1\|160684_162142_-	diguanylate cyclase	G3MA91	Bacillus_virus	2.7e-20	37.3
WP_171834193.1\|162381_163353_+\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	4.2e-46	37.0
WP_171834194.1\|163424_163820_+\|transposase	transposase	NA	NA	NA	NA
WP_171834195.1\|164151_164796_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_171834203.1\|164981_166139_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_171834196.1\|166135_167704_+	DHA2 family efflux MFS transporter permease subunit	A0A0M3UL24	Mycobacterium_phage	1.3e-20	26.0
WP_171834204.1\|167728_169312_+	efflux transporter outer membrane subunit	NA	NA	NA	NA
WP_171834197.1\|170082_171054_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_171834198.1\|171093_171687_+	TetR family transcriptional regulator	NA	NA	NA	NA
WP_172443597.1\|171775_172578_-\|transposase	IS5 family transposase	A0A0M5M147	Mycobacterium_phage	1.5e-25	33.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. NZ_CP053712

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2916 : 71813

Escherichia_phage(23.53%)

integrase,transposase

attL 2312:2326|attR 20803:20817

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2312:2326	attL	NA	NA	NA	NA
WP_171835223.1\|2916_4236_+\|transposase	IS1380 family transposase	NA	NA	NA	NA
WP_171835214.1\|4402_4807_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_171835215.1\|5345_6575_+	peptide antibiotic transporter SbmA	NA	NA	NA	NA
WP_171835216.1\|8533_10159_-	dynamin family protein	NA	NA	NA	NA
WP_171835217.1\|10370_11600_+	fluoride efflux transporter CrcB	NA	NA	NA	NA
WP_171835218.1\|11601_12417_+	universal stress protein	NA	NA	NA	NA
WP_171835219.1\|12937_13144_+	DUF2934 domain-containing protein	NA	NA	NA	NA
WP_172443603.1\|13233_13536_-	hypothetical protein	NA	NA	NA	NA
WP_172443604.1\|13529_13835_+	hypothetical protein	NA	NA	NA	NA
WP_172443605.1\|13950_14625_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	6.3e-49	48.3
WP_172443606.1\|14681_15035_+	hypothetical protein	NA	NA	NA	NA
WP_171837321.1\|15162_15540_+	hypothetical protein	NA	NA	NA	NA
WP_171837320.1\|16740_17994_+	cation:proton antiporter	A0A2H4J178	uncultured_Caudovirales_phage	7.7e-32	38.0
WP_171837663.1\|18094_19129_-\|transposase	IS630 family transposase	S5VXX4	Leptospira_phage	1.5e-81	45.5
WP_172443548.1\|19769_20180_+\|transposase	transposase	NA	NA	NA	NA
WP_171837087.1\|20176_20524_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	3.7e-29	55.1
WP_171837086.1\|20584_22228_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	3.4e-112	44.7
20803:20817	attR	NA	NA	NA	NA
WP_171837410.1\|22357_22819_-	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_171837411.1\|22782_23013_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_171837412.1\|23125_24526_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_171837413.1\|24679_25957_+	hydroxymethylglutaryl-CoA reductase, degradative	NA	NA	NA	NA
WP_171837414.1\|26431_27823_+	tripartite tricarboxylate transporter permease	NA	NA	NA	NA
WP_171837415.1\|27866_28793_+	hydroxymethylglutaryl-CoA lyase	A0A1V0SKU2	Klosneuvirus	1.9e-40	36.5
WP_171837416.1\|30731_31295_+	cation diffusion facilitator family transporter	NA	NA	NA	NA
WP_171837417.1\|31291_32731_-	FAD/NAD(P)-binding protein	NA	NA	NA	NA
WP_171837418.1\|32759_33239_-	Lrp/AsnC ligand binding domain-containing protein	NA	NA	NA	NA
WP_172443619.1\|34586_35261_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	4.8e-49	47.8
WP_171837420.1\|35610_36348_+	KUP/HAK/KT family potassium transporter	M1HZV6	Acanthocystis_turfacea_Chlorella_virus	6.1e-29	35.4
WP_172443607.1\|36381_37056_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	2.8e-49	48.8
WP_171837318.1\|37369_37504_-\|transposase	transposase	NA	NA	NA	NA
WP_171837317.1\|37646_39413_-	EAL domain-containing protein	G3MA91	Bacillus_virus	4.7e-11	32.8
WP_171837316.1\|40736_40997_-\|transposase	transposase	NA	NA	NA	NA
WP_171837315.1\|42615_43449_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	5.8e-20	32.6
WP_172443605.1\|43482_44157_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	6.3e-49	48.3
WP_171837798.1\|44261_44645_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_171837797.1\|44750_45212_-	hypothetical protein	NA	NA	NA	NA
WP_172443608.1\|45481_46759_+	porin	NA	NA	NA	NA
WP_171837609.1\|47293_47383_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA
WP_171837612.1\|47396_49106_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA
WP_171837613.1\|49117_51181_+	potassium-transporting ATPase subunit KdpB	E4ZFI9	Streptococcus_phage	5.1e-33	27.9
WP_171837611.1\|51193_51847_+	potassium-transporting ATPase subunit KdpC	NA	NA	NA	NA
WP_172443609.1\|51846_54588_+	sensor histidine kinase KdpD	Q8QKV7	Ectocarpus_siliculosus_virus	8.7e-12	28.2
WP_171837548.1\|54584_55463_+	response regulator	W8CYM9	Bacillus_phage	2.6e-26	31.7
WP_171837547.1\|55491_56653_+\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.1e-37	37.1
WP_171837537.1\|56982_57372_-	hypothetical protein	NA	NA	NA	NA
WP_171837546.1\|57404_61004_-	relaxase domain-containing protein	NA	NA	NA	NA
WP_172443610.1\|61056_61398_-	hypothetical protein	NA	NA	NA	NA
WP_171837544.1\|61538_62117_+	hypothetical protein	NA	NA	NA	NA
WP_171837543.1\|62193_62985_+	hypothetical protein	NA	NA	NA	NA
WP_171837542.1\|62981_63761_+	hypothetical protein	NA	NA	NA	NA
WP_172443611.1\|64189_64594_+	hypothetical protein	NA	NA	NA	NA
WP_171837540.1\|64571_64928_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_171837550.1\|65271_66807_-\|transposase	ISL3 family transposase	NA	NA	NA	NA
WP_171837539.1\|67672_68742_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_171837549.1\|68843_69215_-	hypothetical protein	NA	NA	NA	NA
WP_171837289.1\|70289_71813_+\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	4.6e-23	27.5

DBSCAN-SWA_2

74896 : 138953

Mycobacterium_phage(16.67%)

integrase,transposase

attL 72297:72312|attR 141048:141063

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
72297:72312	attL	NA	NA	NA	NA
WP_172443614.1\|74896_75698_+\|transposase	IS5 family transposase	A0A0M5M147	Mycobacterium_phage	1.3e-24	32.6
WP_171837668.1\|75660_75819_-	AAA family ATPase	NA	NA	NA	NA
WP_171837667.1\|75815_75998_-	hypothetical protein	NA	NA	NA	NA
WP_171837664.1\|76129_76270_-	hypothetical protein	NA	NA	NA	NA
WP_171837666.1\|78057_79014_+	replication protein RepA	NA	NA	NA	NA
WP_171837665.1\|79317_79797_+	hypothetical protein	NA	NA	NA	NA
WP_171837391.1\|79985_81518_+\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	3.3e-117	44.3
WP_171837390.1\|81529_82297_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	3.2e-57	47.5
WP_171837941.1\|82377_82950_+	hypothetical protein	NA	NA	NA	NA
WP_171837940.1\|83723_84407_-	AAA family ATPase	A0A0A8IL09	Aurantimonas_phage	2.5e-37	43.6
WP_171837942.1\|86472_87594_-\|integrase	site-specific integrase	Q5QBN6	Enterobacteria_phage	1.5e-15	28.8
WP_171835752.1\|87998_88454_+	hypothetical protein	NA	NA	NA	NA
WP_172443615.1\|88453_89296_+	AAA family ATPase	A0A0F7L6J1	uncultured_marine_virus	2.4e-05	27.1
WP_171836848.1\|89295_90174_+	hypothetical protein	NA	NA	NA	NA
WP_171836849.1\|90182_90785_+	hypothetical protein	NA	NA	NA	NA
WP_171836850.1\|90777_91623_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	5.2e-08	24.6
WP_171836851.1\|91874_92435_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_171836852.1\|92493_93315_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_171836854.1\|95253_95685_+\|transposase	transposase	NA	NA	NA	NA
WP_171836855.1\|95598_96369_-	SDR family oxidoreductase	A0A0M4JSW6	Mollivirus	1.1e-09	29.2
WP_171836856.1\|96601_97603_+	hypothetical protein	NA	NA	NA	NA
WP_171836857.1\|97668_98658_+	dihydroxyacetone kinase subunit DhaK	NA	NA	NA	NA
WP_171836858.1\|98659_99310_+	dihydroxyacetone kinase subunit L	NA	NA	NA	NA
WP_172443616.1\|99351_100317_-	sugar-binding transcriptional regulator	NA	NA	NA	NA
WP_171836860.1\|100596_101469_+	haloalkane dehalogenase	B9U1C3	Vaccinia_virus	1.4e-35	33.1
WP_171836861.1\|101542_102700_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_171836862.1\|102744_104196_+	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_171836863.1\|104259_105723_+	succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_171836864.1\|105824_106145_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_171836866.1\|106762_107701_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_171836867.1\|107805_108354_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_171836868.1\|108393_108822_+	RidA family protein	NA	NA	NA	NA
WP_171836869.1\|113982_114252_+	HU family DNA-binding protein	NA	NA	NA	NA
WP_171836870.1\|114650_115405_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_172443617.1\|116288_117091_-\|transposase	IS5 family transposase	A0A0M5M147	Mycobacterium_phage	1.5e-25	33.0
WP_171837433.1\|117282_117444_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_171837432.1\|117822_118995_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	5.5e-16	30.7
WP_171837431.1\|119361_121251_-	DEAD/DEAH box helicase family protein	NA	NA	NA	NA
WP_171837436.1\|121375_121645_-	HU family DNA-binding protein	NA	NA	NA	NA
WP_171837430.1\|121863_122307_-	hypothetical protein	NA	NA	NA	NA
WP_171837429.1\|122436_122793_-	DUF3820 family protein	A0A0K1LLS9	Caulobacter_phage	3.8e-21	44.7
WP_171837428.1\|124698_125682_-	LysR family transcriptional regulator	Q6JIH3	Burkholderia_virus	1.7e-10	25.5
WP_171837435.1\|125771_126653_+	alpha/beta fold hydrolase	A0A0M3UKI8	Mycobacterium_phage	6.0e-07	30.8
WP_171837427.1\|126732_127638_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_171837426.1\|127659_128811_+	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_171837425.1\|129120_130092_-	PAS domain-containing protein	NA	NA	NA	NA
WP_171837424.1\|131285_131813_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_171837423.1\|132024_132699_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	3.5e-47	46.4
WP_171837422.1\|132985_133552_+	hypothetical protein	NA	NA	NA	NA
WP_172443618.1\|133943_135090_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	7.7e-63	47.5
WP_171837116.1\|135164_135362_+	EAL domain-containing protein	NA	NA	NA	NA
WP_171837117.1\|135897_138204_+	EAL domain-containing protein	G3MA91	Bacillus_virus	1.3e-21	34.3
WP_171837115.1\|138443_138953_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A0N9RU54	Staphylococcus_phage	2.0e-15	36.4
141048:141063	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage