CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP053837	Aliiarcobacter faecis strain CCUG 66484 chromosome, complete genome	2 crisprs	cas1,cas9,DEDDh,csa3,PrimPol,cas3	0	2	3	0
NZ_CP053838	Aliiarcobacter faecis strain CCUG 66484 plasmid pAFAEC, complete sequence	1 crisprs	PD-DExK,PrimPol	0	2	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP053837_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053837_1

436703-436934

orTypeII

Consensus_repeat	Method
GTTTTAATCTACTCTCAAATCCCCATTTGATATAAT	PILER-CR
GTTTTAATCTACTCTCAAATCCCCATTTGATATAAT	CRISPRCasFinder
GTTTTAATCTACTCTCAAATCCCCATTTGATATAAT	CRT

3 spacers

cas2,cas1,cas9

The CRISPR arrays of NZ_CP053837_1

>merge|NZ_CP053837|1|436703-436934|PILER-CR,CRISPRCasFinder,CRT
GTTTTAATCTACTCTCAAATCCCCATTTGATATAATCTATGAGCTTATTTTTAGGAAAAGACACAGTTTTAATCTACTCTCAAAACCCCATTTGATATAATCTTTAATATCGTTATCATTCTTTAATCGTGTTTTAATCTACTCTCAAATCCCCATTTGATATAATGTGAAACATAATCAGGATAAGTTCTAAAAGGTTTTAATCTACTCTCAAATCCCCATTTGATATAAT

>NZ_CP053837|1|1|436703-436934|PILER-CR
GTTTTAATCTACTCTCAAATCCCCATTTGATATAAT	CTATGAGCTTATTTTTAGGAAAAGACACA
GTTTTAATCTACTCTCAAAACCCCATTTGATATAAT	CTTTAATATCGTTATCATTCTTTAATCGT
GTTTTAATCTACTCTCAAATCCCCATTTGATATAAT	GTGAAACATAATCAGGATAAGTTCTAAAAG
GTTTTAATCTACTCTCAAATCCCCATTTGATATAAT

>NZ_CP053837|1|1|436703-436934|CRISPRCasFinder
GTTTTAATCTACTCTCAAATCCCCATTTGATATAAT	CTATGAGCTTATTTTTAGGAAAAGACACA
GTTTTAATCTACTCTCAAAACCCCATTTGATATAAT	CTTTAATATCGTTATCATTCTTTAATCGT
GTTTTAATCTACTCTCAAATCCCCATTTGATATAAT	GTGAAACATAATCAGGATAAGTTCTAAAAG
GTTTTAATCTACTCTCAAATCCCCATTTGATATAAT

>NZ_CP053837|1|1|436703-436934|CRT
GTTTTAATCTACTCTCAAATCCCCATTTGATATAAT	CTATGAGCTTATTTTTAGGAAAAGACACA
GTTTTAATCTACTCTCAAAACCCCATTTGATATAAT	CTTTAATATCGTTATCATTCTTTAATCGT
GTTTTAATCTACTCTCAAATCCCCATTTGATATAAT	GTGAAACATAATCAGGATAAGTTCTAAAAG
GTTTTAATCTACTCTCAAATCCCCATTTGATATAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053837.1\|WP_026806394.1\|445074_445398_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053837.1\|WP_026806402.1\|435801_436599_+\|3-deoxy-8-phosphooctulonate-synthase	unknown	unknown	gnl\|CDD\|235363
NZ_CP053837.1\|WP_081754540.1\|430388_431885_+\|general-secretion-pathway-protein-GspD	unknown	unknown	gnl\|CDD\|274175
NZ_CP053837.1\|WP_026806405.1\|432477_433542_-\|DUF5644-domain-containing-protein	unknown	unknown	gnl\|CDD\|376136
NZ_CP053837.1\|WP_026806404.1\|433541_434810_-\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|236486
NZ_CP053837.1\|WP_051487620.1\|431871_432477_-\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|366837
NZ_CP053837.1\|WP_026806392.1\|446420_447254_+\|EI24-domain-containing-protein	unknown	unknown	gnl\|CDD\|377798
NZ_CP053837.1\|WP_081754539.1\|442819_443518_+\|orotidine-5'-phosphate-decarboxylase	unknown	unknown	gnl\|CDD\|234695
NZ_CP053837.1\|WP_026806410.1\|427699_428536_-\|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl\|CDD\|235536
NZ_CP053837.1\|WP_119173170.1\|436982_437297_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_CP053837.1\|WP_026806399.1\|438310_441823_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	cd09643_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187774
NZ_CP053837.1\|WP_026806400.1\|437462_438206_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
NZ_CP053837.1\|WP_051487623.1\|429208_429682_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053837.1\|WP_026806397.1\|442422_442818_+\|transcription-antitermination-factor-NusB	unknown	unknown	gnl\|CDD\|234686
NZ_CP053837.1\|WP_026806393.1\|445501_446377_+\|radical-SAM/SPASM-domain-containing-protein	unknown	unknown	gnl\|CDD\|379057
NZ_CP053837.1\|WP_026806409.1\|428504_429212_-\|TlyA-family-RNA-methyltransferase	unknown	unknown	gnl\|CDD\|224110
NZ_CP053837.1\|WP_026806403.1\|434912_435791_+\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|307170
NZ_CP053837.1\|WP_026806398.1\|441950_442421_+\|6,7-dimethyl-8-ribityllumazine-synthase	unknown	unknown	gnl\|CDD\|234606
NZ_CP053837.1\|WP_026806407.1\|429785_430358_+\|YigZ-family-protein	unknown	unknown	gnl\|CDD\|224653
NZ_CP053837.1\|WP_026806395.1\|444355_445078_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP053837.1\|WP_026806402.1\|435801_436599_+\|3-deoxy-8-phosphooctulonate-synthase	gnl\|CDD\|235363	PRK05198, PRK05198, 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional.	9.24124e-155
NZ_CP053837.1\|WP_081754540.1\|430388_431885_+\|general-secretion-pathway-protein-GspD	gnl\|CDD\|274175	TIGR02517, Putative_type_II_secretion_system_protein_D, type II secretion system protein D. In Gram-negative bacteria, proteins that have first crossed the inner member by Sec-dependent protein transport can be exported across the outer membrane by type II secretion, also called the main terminal branch of the general secretion pathway. Members of this family are general secretion pathway protein D. In Yersinia enterocolitica, a second member of this family is part of a novel second type II secretion system specifically associated with virulence (See ). This family is closely homologous to the type IV pilus outer membrane secretin PilQ (TIGR02515) and to the type III secretion system pore YscC/HrcC (TIGR02516). [Protein fate, Protein and peptide secretion and trafficking].	1.09773e-61
NZ_CP053837.1\|WP_026806405.1\|432477_433542_-\|DUF5644-domain-containing-protein	gnl\|CDD\|376136	pfam18712, DUF5644, Family of unknown function (DUF5644). This is a domain of unknown function found at the C-terminal region of Helicobacterial proteins of unknown function.	0.00647877
NZ_CP053837.1\|WP_026806404.1\|433541_434810_-\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	gnl\|CDD\|236486	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated.	0
NZ_CP053837.1\|WP_051487620.1\|431871_432477_-\|HNH-endonuclease	gnl\|CDD\|366837	pfam01844, HNH, HNH endonuclease. His-Asn-His (HNH) proteins are a very common family of small nucleic acid-binding proteins that are generally associated with endonuclease activity.	0.00169007
NZ_CP053837.1\|WP_081754539.1\|442819_443518_+\|orotidine-5'-phosphate-decarboxylase	gnl\|CDD\|234695	PRK00230, PRK00230, orotidine-5'-phosphate decarboxylase.	5.84218e-107
NZ_CP053837.1\|WP_026806410.1\|427699_428536_-\|bifunctional-riboflavin-kinase/FAD-synthetase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	3.86905e-97
NZ_CP053837.1\|WP_119173170.1\|436982_437297_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	3.60237e-23
NZ_CP053837.1\|WP_026806399.1\|438310_441823_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|187774	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Very large protein containing McrA/HNH-nuclease related domain and a RuvC-like nuclease domain; signature gene for type II.	1.72374e-72
NZ_CP053837.1\|WP_026806400.1\|437462_438206_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	2.13856e-70
NZ_CP053837.1\|WP_026806392.1\|446420_447254_+\|EI24-domain-containing-protein	gnl\|CDD\|377798	pfam07264, EI24, Etoposide-induced protein 2.4 (EI24). This family contains a number of eukaryotic etoposide-induced 2.4 (EI24) proteins approximately 350 residues long as well as bacterial CysZ proteins (formerly known as DUF540). In cells treated with the cytotoxic drug etoposide, EI24 is induced by p53. It has been suggested to play an important role in negative cell growth control.	1.98743e-06
NZ_CP053837.1\|WP_026806397.1\|442422_442818_+\|transcription-antitermination-factor-NusB	gnl\|CDD\|234686	PRK00202, nusB, transcription antitermination factor NusB.	2.13908e-44
NZ_CP053837.1\|WP_026806393.1\|445501_446377_+\|radical-SAM/SPASM-domain-containing-protein	gnl\|CDD\|379057	pfam13186, SPASM, Iron-sulfur cluster-binding domain. This domain occurs as an additional C-terminal iron-sulfur cluster binding domain in many radical SAM domain, pfam04055 proteins. The domain occurs in a number of proteins that modify a protein to become an active enzyme, or a peptide to become a ribosomal natural product. The domain is named SPASM because it occurs in the maturases of Subilitosin, PQQ, Anaerobic Sulfatases, and Mycofactocin.	3.39533e-12
NZ_CP053837.1\|WP_026806409.1\|428504_429212_-\|TlyA-family-RNA-methyltransferase	gnl\|CDD\|224110	COG1189, COG1189, Predicted rRNA methylase [Translation, ribosomal structure and biogenesis].	1.61374e-68
NZ_CP053837.1\|WP_026806403.1\|434912_435791_+\|DMT-family-transporter	gnl\|CDD\|307170	pfam00892, EamA, EamA-like transporter family. This family includes many hypothetical membrane proteins of unknown function. Many of the proteins contain two copies of the aligned region. The family used to be known as DUF6. Members of this family usually carry 5+5 transmembrane domains, and this domain attempts to model five of these.	2.58931e-09
NZ_CP053837.1\|WP_026806398.1\|441950_442421_+\|6,7-dimethyl-8-ribityllumazine-synthase	gnl\|CDD\|234606	PRK00061, ribH, 6,7-dimethyl-8-ribityllumazine synthase; Provisional.	3.15823e-78
NZ_CP053837.1\|WP_026806407.1\|429785_430358_+\|YigZ-family-protein	gnl\|CDD\|224653	COG1739, COG1739, Uncharacterized conserved protein [Function unknown].	1.69445e-47

>NZ_CP053837.1|WP_026806402.1|435801_436599_+|3-deoxy-8-phosphooctulonate-synthase
MVVMTGPCVLEDMDTVLKIAEKLKPLSEDKRVDFYFKASFDKANRTSLSSFRGPGLDEGLKIFEKIKKEFGYKVVTDIHESYQASPAGEVMDILQIPAFLCRQTDLLVAAAKTPAKINIKKGQFLAADAMKHPVEKVLNTRGISEVSYENSQKAGVWLCERGNTFGYGALVVDMRNLILLRQYAPVIFDATHSVQIPSTGGTTGGNSSFVPYMARAAASVGVDGFFFETHIDPSVAKSDGPNMLHIDTLYKTMNDIFAIKEALGN
>NZ_CP053837.1|WP_026806403.1|434912_435791_+|DMT-family-transporter
MEENVNKGIKYMLIASFLFALMGITAKELSSTLSSIEIVFFRNVFGVFFILFSIYKSPLNQMGGKFWLLIFRGTAGFIALLFFFYNIANIPLGEAMTFSKTSTIFTALLAYFFLKEHIGFKGWIGVFIGFIGILFITEFDGSSLKKTDYLGILSGVGAALAYTSIRELRKYYDSRAIVLSFMAVGTICPLILMIISEFYVNSNLDFMLGEFIFPTNKDWIFIVLLGIFSTYAQIYMTKAYSFAKAGIIGTISYSNIVFSIILGLFMGDSFPSFIIVLGIILIVISGILVSKK
>NZ_CP053837.1|WP_026806404.1|433541_434810_-|UDP-N-acetylglucosamine-1-carboxyvinyltransferase
MDYLKIVGNKKLSGEISISGAKNAALPLIASTILAKNETIINNLPNVADINTFLKLIKMLGGSFIKEQNSAKIDTSSIDNTTATYDIVKTMRASILVLGPLLARFGHCEVSLPGGCAIGQRPVDLHLKALEQMGAKIEILQGYIKATAPNGLKGAKIVFDKVTVGGTENIVMAAALASGVTTIINAAKEPEIVQLCEVIQSAGVKIEGIGTSKIIIEGTGGKLLDIKPFSVIPDRIEAGTYMCVAAITNQKLTIKNIIPAHLEAITSKLEEMNFEIDVKEDELTIFPTSKILPVNIITTEFPGFPTDMQAQFMALATQAEGTSTIDERLFENRFMHASELNRLGAEIHLNGNIATIIGKKGGLSGTDVMATDLRASSALVLAALVANGETNIHRIYHLDRGYEDLEGKLLKIGANIQRLKEN
>NZ_CP053837.1|WP_026806405.1|432477_433542_-|DUF5644-domain-containing-protein
MKLEISLFRFDKDSDYLPYYTKHFINLKDEKNLLDILRTIYKNEKFSFFDSQNSLFVVNNIFMKASTLLEDIIKSFGKDLKIEPISIKRAYKDFLINEDDFYTKFKILKEFCSLEDRDFYNNQKLFYYASNTLNYKESYIGDALLLLASKKIKDTPNKKDEIFKILKEQKYGANFHTSLKNRVFNFDLQIERDIKELQKELGFIKDFNERTIIFEELGTDLNIKYTFKNFNIACFNRDLKFDIFLQKLEANFLTLENFDLDLAKDSFFINPKLTYFIASQILLTAFDSGADFLVVFNSEDFFIFNNKLKEIEKISNREIPLPIIHINELQMLANEDFEKARKSFKNHKINPKII
>NZ_CP053837.1|WP_051487620.1|431871_432477_-|HNH-endonuclease
MEILIYTLSFLSILAFILFLLKKPKKLKKSDNKFEFFLKNIQLYIKRYHPKIEINYKIVELSKDEKNLKIRQTLIIQDIVNQFYNYNFIKKSQEPIPKEKLWPTYIDNPKCSSYPNDWLQRKEFAYTRDNKSCKRCGKNLLNLNEVYSSFVRPIKDGGSFNFENILTLCSDCNKILDSNLEKSSLINSLKLYDDLLKFIED
>NZ_CP053837.1|WP_081754540.1|430388_431885_+|general-secretion-pathway-protein-GspD
MKTIFKLLFLFVLSSNLFSKELIDINFENLKLDEFVTIVSKILDKNIFINEPLEGTINFSSNKKLSKDELLNILELSLKQKGYILKEEKGFFKLSKINEIEEKPLITEILNLKNVDGVNILKILEDLVNKRVYKEGTQKPIITLDIESNSLVLMGSKEELENLITLISSLDKEQSQVYVQARIIELNDEMLENIGVSYGIFGGKVGNHNLSTFSASLNGGSNSANVVKDILNLKIPDITSGLALGASLNLLKQNGALNIVSEPSILAINNKESSIYVGEKISIQTSSSVTDGGTQRTNFQREDVGLTLKVKPRISSDTKVTLEINTLLEGIKTKSVGAGENPDTLKKEIKTTAILNNGESVIIGGLIENKNEQIEQKVPILGDVPVVGNIFKNDANLSKKSNLVVIVTPYMIPKSKDITFVRNELAQLKNLEDKYLQDSLIRVKEEALKKEQDSKKASEKLKELDNKLADIKNKEATKKVGISAENRAKEIFDSLNPQ
>NZ_CP053837.1|WP_026806407.1|429785_430358_+|YigZ-family-protein
MKFVNREFTFTIEEKKSKFIAYLFPFSDFSKTMQRLRAEYLKAVHFVYAYRYLNEFEQIVENSSDDGEPKGTSGKPALAVLSGAEIINSAVIIVRYFGGVKLGTGGLVRAYGNSVNEVIKIAEFSSYKKQEGYSLECEYSLLSQLEYLLNQNNIAILNKDFNLTVRVDISLSKDEFIHLKTLLPREIKIL
>NZ_CP053837.1|WP_051487623.1|429208_429682_-|hypothetical-protein
MEISINNISSVNSNITLNYENMDSVTKEKEKDVFDLFLEKLEIKKTEEKEQEALLENLDSVAKTGFTKDELELIKQIFEELQKRRAESTQTSKNPEDYIKDLQNDLQTAIFKATGKQVKLDKDFVNSFLNQQNNNTELLAKPTIDEELRLLYNLKKI
>NZ_CP053837.1|WP_026806409.1|428504_429212_-|TlyA-family-RNA-methyltransferase
MRLDLYLTTNFNIQSRNKASELIKSNKVKIDGKIISKASFIVEEDMNIELLEEDFYVSRAAYKLKFFLDEIKIDLNNFIALDIGSSTGGFTQILLENEIKKVICVDVGSNQLHERIKHNSKIEFFENCDIRDFKSEICFDIITCDVSFISILNIIETINSLNFKRIIILFKPQFEVGTGIKRDKKGVVKDKFAIEKARDKFLSKTLELNWKLEKNSISKLQGKDGNDEELFYFSR
>NZ_CP053837.1|WP_026806410.1|427699_428536_-|bifunctional-riboflavin-kinase/FAD-synthetase
MMKNSSILVDKKNIKSIAIGGFDGMHIAHQELFKHLESFGAIVCIETGYANLTPKSFRQEYTNYPIYYYILENIKKLDGLEFIKLLKQEFPNLKKIVVGFDFCFGKNRKHCIEDLKNLFDGEVIIIKEIKIDNFPVHSRYIREFLKDGEIKKANKFLGKNYKIYGTSIKGQGLGKSDFVPTINLRVDNFLLPKDGVYITNTIIDNIEYNSVSFIGNRKTTDNNFAIETHILEKNIEFENPHISIKFIEKIRDNKKFDNFLELKNQILNDIDIAKKYFY
>NZ_CP053837.1|WP_119173170.1|436982_437297_-|CRISPR-associated-endonuclease-Cas2
MVLFAMFDMPTETKGDIKKYTKFRKKLLEMGFIMFQFSIYVRFCNSLENAQKYEKKIKEIPPTKGSIRVLKVTEAQYKNMIIIENYREKPEKKVEKQTQTVLVF
>NZ_CP053837.1|WP_026806400.1|437462_438206_-|type-II-CRISPR-associated-endonuclease-Cas1
MSFQKLYIKNKAYLSYTNNLIKIKTEDSENTVCFDDIDTILIENYHTTISTALLAQLSKADISVIFCDERFMPSSILLGINKNSRTTKIQKAQVLLSKPKLNQIWQKIVYSKVENQSKILKIFNIKENYLDSLLPRVKSNDKEHIEAVAATYYFKELFDKDFSRNSLLDGRNVALNFGYTIFRSSICRYLIVYGLNPVFGIHHSNELNAFNLADDFSSNSRFICKKKYKKRYPNFKFYENRAFKTIR
>NZ_CP053837.1|WP_026806399.1|438310_441823_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MERILGLDLGTNSIGFALNKVEEKDSITIFNELASNSIIFSEYVPSTDRRAFRSGRRRNERASRRKENIRKLFCYFNLASKNILDNPIEYFNNLTKLYKEPYSLREEAIKGKKLSKDEFTFALYTIISRRGYTNLFAKEEDENKAKESEKINSAILNNKNIYKNSNYTLPSKVLTLKKEELEEDGFINIAIRNKKDNYNNSLDRKLWQEEAELLIESQKNNIELFKDIKTYEDFKNKFINGVNKNSKGIFEQRNLKSVEDMVGFCSFYNLYSKEPQKRVINAHIKAIEFVLRQRIENSILGNLILNKKTGEFVKISKEDIETTINFWLYTPNVQTITAKNIFKNAGLKDLEIQTSDKQDDTVQDISVHKALLEIVDFETILKNEEFYSKLLEVLHYFVSEQQIKDEIKKLNKENILSEEQIDKIANINKAKSSYLSFSLKFIDEILQKLKNDISYQTCLEELGYFKRYTQMEAYNYLPPLNPSIEDIKWLEKNVKNFKSEQLFYQPLISPNVKRVISILRRLVNELISKYGKIDKIIIETARELNSKKDEDKIKKSQEQSNKEIKDAQTLLKSGNKELSNKNILRARLLKEQKSKCLYSGEGLTLEEALDENITEIEHFIPRSKIWIDSYKNKILVLKKYNQNKSNQHPVSFLKSIGKWENFVGRVDEFIANKDKKICLTDEKNIQKIWDNEKLEDRFLNDTRSATKIVANYLEHYLFPKQNEYGKGESNDKVIRVTGKAINELKKLWGINEAQPKNEEGKKDRDTNYHHTIDAIVISLLNNSSKKALNDFFKQKEDKFKTKAILEKLKTRFPISKNGKSLFEFVKDKVEKYEKNELYVCPYMKKRENIRGFKDGNIKLIWDKELNNFSQIDKVEINKKLLLNNFGKDLKDDEVKKEFEKIKDKLNLPKQNNIKIALEEYEKRLLEIRKKINNISEEIKQEQNNLPRDKKAIETVEILEIKNRIEKLEQTKKEFVKELEFPCFFYTKDGKKQIVRSLNLKSNSVTKADSIIITDKKQKNRVQRLTKEVYENLKSSKTPFVAKLNDNTLSVDLYNTLKGQLIGLNYFSSIKNDILPKIDERKIKLISNYDDKITVSKNNIIEIEDLKNGTKNYYTCNGGGEIGKGKNVIKVDNINTKNKSVIPIQIADYRIVKPVKINFFGKISYEEFKKN
>NZ_CP053837.1|WP_026806398.1|441950_442421_+|6,7-dimethyl-8-ribityllumazine-synthase
MKIIEGILRLKGNEKVAIINGRFNHIITDRLVEGARDAFKRHGGNEDNLDLILVPGAFEIPFALDKALSGGKYDAVCCVGAVIRGATPHFDYISAEATKGIATVALKYGKPVSNGVLTTDTIEQAIERAGSKVGNKGAEAMVTIIEMLDLYSEMGK
>NZ_CP053837.1|WP_026806397.1|442422_442818_+|transcription-antitermination-factor-NusB
MATRTQARESVIGLLYAYDLGNDEITKFVDEILEEKKIRNNQKEFALNLFNGTIKNLSTIDDQIKAFITQGNLEDIGSVEKSILRLAIYEILFENLPKAVIINEAIELSKRLASDGAPKFVNAILDQVKKG
>NZ_CP053837.1|WP_081754539.1|442819_443518_+|orotidine-5'-phosphate-decarboxylase
MKKDMKLCVSLDLESSKENLALVEKIKDFDVWLKVGFRTYLRDGKKFLEDIKAINPNFKIFLDLKLYDIPNTMADAAQDISNFGLVDMFNVHASAGKFAMQTVMQRLKDIPNRPLVLAVTALTSFDNDSFKKIYGENIDKKAREFAKETFEAGLDGVVCSAFESLDIKNNTSKEFITLCPGIRPFGEDSGDQKRVADIGFSKENLVDFIVVGRPIYKSENPRVVVKNILANI
>NZ_CP053837.1|WP_026806395.1|444355_445078_+|hypothetical-protein
MPTFELVLPEKLLFVFSNISLISFCFFISFIFAKLFRSFLIFFITLSLISSLFYGDIFLKYVVRTYHILFKMDSKILIKAQKNLNGKIDSLDLKEIYVYPLRNSGMLNLDDRYDISKVHEKYIDKFIDISTYSTRFNRHTFDIERVYLNGNNRILDEKPRFEVTKKEIKSFFSTIYSKEEFLFRDKLNNIVIATAYNISFKPSIDRFRNKHLFWSLEKEEEFNPKPIQNFDNIYKKLFMN
>NZ_CP053837.1|WP_026806394.1|445074_445398_-|hypothetical-protein
MEMILNEDDMVVGARFENGTIQDYIDKNNNYGLLRVEDTTCNWFLFNKVESEDEIQKLYEEVTKKEHFIQNDFGEEIVIFNKNGDISFEELAKKIDEYLGDELGNFI
>NZ_CP053837.1|WP_026806393.1|445501_446377_+|radical-SAM/SPASM-domain-containing-protein
MKKFKKVHIELTNICNLKCTFCPPKLFPNKIMDLSTFDILNAQLKEFTKELAYHIVGDPLVLGNLEEYLDISLKHNLKVNITTTANNISQKHYKALINSSIKQINFSLNSYNANSHKKSFEEYLEPILEFVKFAQEEKHEYFINFRIWNLDEEKTAFEFNKKVFDKINIFFGSNLYIDEIYKNKPKNIRVDRKIFINFDEYFVWPNLKNEIVSQKGFCYGLTSHFGILSNGTVVPCCLDLDANINLGNIHQSTVKDILQTNRAKNMIKGFKNSILVEELCQKCEYRTRFDF
>NZ_CP053837.1|WP_026806392.1|446420_447254_+|EI24-domain-containing-protein
MNEIEILRRSVRDFFSSSMLKLALIPLLVTMLLMYMIFFGMASYGIEALRTVAETSQATGEVVIDDKAPFYFVWLTYLTVFLFKYSITSWLAATLFYTVGAIFIFHLSVIITLLVIGLLTPFVVNYLEKVHYKNLDLKPYGTILGAFWVFLKALFVMIFLYVLLVPLYFVPLINIIAFYLPLYYFFHKLLNYDVSSTILSKQEYKQIYSKNGSSFRMRTLFLYFISTIPFITLFVAVFYTIYLSHAYFIELEKISLIKSKDIDEDIELNKIEHKESL

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Click the colored protein region to show detailed information

Crispr_ID: NZ_CP053837_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053837_2

1641290-1641369

Orphan

Consensus_repeat	Method
CCACCAGTTCCGCATCCACCACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP053837_2

>merge|NZ_CP053837|2|1641290-1641369|CRISPRCasFinder
CCTGCACATCCACAACCTCCACCAGTTCCACATCCACCACCGTGAGAGTGACTATGTCCACCACCTCCACAACATCCACC

>NZ_CP053837|2|2|1641290-1641369|CRISPRCasFinder
CCTGCACATCCACAACCTCCACC	AGTTCCACATCCACCACCGTGAGAGTGACTATGT
CCACCACCTCCACAACATCCACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053837.1\|WP_026806173.1\|1634847_1635417_-\|bifunctional-precorrin-2-dehydrogenase/sirohydrochlorin-ferrochelatase	unknown	unknown	gnl\|CDD\|224562
NZ_CP053837.1\|WP_026806187.1\|1645965_1646529_-\|MotA/TolQ/ExbB-proton-channel-family-protein	unknown	unknown	gnl\|CDD\|223881
NZ_CP053837.1\|WP_026806174.1\|1635538_1636561_+\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380027
NZ_CP053837.1\|WP_026806179.1\|1639485_1640187_-\|5'-methylthioadenosine/adenosylhomocysteine-nucleosidase	unknown	unknown	gnl\|CDD\|180148
NZ_CP053837.1\|WP_026806184.1\|1643555_1644830_-\|Tol-Pal-system-protein-TolB	unknown	unknown	gnl\|CDD\|235212
NZ_CP053837.1\|WP_026806180.1\|1640179_1641109_-\|ACP-S-malonyltransferase	unknown	unknown	gnl\|CDD\|223408
NZ_CP053837.1\|WP_026806182.1\|1641863_1642841_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|188247
NZ_CP053837.1\|WP_026806190.1\|1649244_1650762_-\|F0F1-ATP-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|236448
NZ_CP053837.1\|WP_026806178.1\|1638022_1639429_-\|aspartate-ammonia-lyase	unknown	unknown	gnl\|CDD\|237031
NZ_CP053837.1\|WP_024775907.1\|1646933_1648328_-\|F0F1-ATP-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|236447
NZ_CP053837.1\|WP_026806185.1\|1644836_1645568_-\|TonB-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|372476
NZ_CP053837.1\|WP_034216573.1\|1637535_1638036_-\|asparaginase	unknown	unknown	gnl\|CDD\|376375
NZ_CP053837.1\|WP_026806176.1\|1636971_1637463_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053837.1\|WP_034216570.1\|1634465_1634846_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053837.1\|WP_026806189.1\|1648349_1649234_-\|F0F1-ATP-synthase-subunit-gamma	unknown	unknown	gnl\|CDD\|235535
NZ_CP053837.1\|WP_026806183.1\|1642844_1643387_-\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|274307
NZ_CP053837.1\|WP_026806171.1\|1634062_1634389_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|315619
NZ_CP053837.1\|WP_026806186.1\|1645570_1645960_-\|biopolymer-transporter-ExbD	unknown	unknown	gnl\|CDD\|223917
NZ_CP053837.1\|WP_034216571.1\|1636570_1636963_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053837.1\|WP_026806188.1\|1646535_1646913_-\|F0F1-ATP-synthase-subunit-epsilon	unknown	unknown	gnl\|CDD\|234796

Protein	Function_ID	Function_description	E-value
NZ_CP053837.1\|WP_026806173.1\|1634847_1635417_-\|bifunctional-precorrin-2-dehydrogenase/sirohydrochlorin-ferrochelatase	gnl\|CDD\|224562	COG1648, CysG, Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism].	3.75504e-54
NZ_CP053837.1\|WP_026806187.1\|1645965_1646529_-\|MotA/TolQ/ExbB-proton-channel-family-protein	gnl\|CDD\|223881	COG0811, TolQ, Biopolymer transport proteins [Intracellular trafficking and secretion].	9.60265e-23
NZ_CP053837.1\|WP_026806174.1\|1635538_1636561_+\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|380027	pfam17805, AsnC_trans_reg2, AsnC-like ligand binding domain. This entry contains an AsnC-like ligand binding domain.	6.77515e-31
NZ_CP053837.1\|WP_026806179.1\|1639485_1640187_-\|5'-methylthioadenosine/adenosylhomocysteine-nucleosidase	gnl\|CDD\|180148	PRK05584, PRK05584, 5'-methylthioadenosine/adenosylhomocysteine nucleosidase.	3.77773e-118
NZ_CP053837.1\|WP_026806184.1\|1643555_1644830_-\|Tol-Pal-system-protein-TolB	gnl\|CDD\|235212	PRK04043, tolB, Tol-Pal system protein TolB.	0
NZ_CP053837.1\|WP_026806180.1\|1640179_1641109_-\|ACP-S-malonyltransferase	gnl\|CDD\|223408	COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism].	6.62442e-101
NZ_CP053837.1\|WP_026806182.1\|1641863_1642841_-\|hypothetical-protein	gnl\|CDD\|188247	TIGR02795, Uncharacterized_protein_in_oprL_3'region, tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.	5.13197e-11
NZ_CP053837.1\|WP_026806190.1\|1649244_1650762_-\|F0F1-ATP-synthase-subunit-alpha	gnl\|CDD\|236448	PRK09281, PRK09281, F0F1 ATP synthase subunit alpha; Validated.	0
NZ_CP053837.1\|WP_026806178.1\|1638022_1639429_-\|aspartate-ammonia-lyase	gnl\|CDD\|237031	PRK12273, aspA, aspartate ammonia-lyase; Provisional.	0
NZ_CP053837.1\|WP_024775907.1\|1646933_1648328_-\|F0F1-ATP-synthase-subunit-beta	gnl\|CDD\|236447	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated.	0
NZ_CP053837.1\|WP_026806185.1\|1644836_1645568_-\|TonB-C-terminal-domain-containing-protein	gnl\|CDD\|372476	pfam13103, TonB_2, TonB C terminal. This family contains TonB members that are not captured by pfam03544.	3.28019e-08
NZ_CP053837.1\|WP_034216573.1\|1637535_1638036_-\|asparaginase	gnl\|CDD\|376375	pfam00710, Asparaginase, Asparaginase, N-terminal. This is the N-terminal domain of this enzyme.	1.55289e-19
NZ_CP053837.1\|WP_026806189.1\|1648349_1649234_-\|F0F1-ATP-synthase-subunit-gamma	gnl\|CDD\|235535	PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated.	1.26553e-120
NZ_CP053837.1\|WP_026806183.1\|1642844_1643387_-\|OmpA-family-protein	gnl\|CDD\|274307	TIGR02802, Peptidoglycan-associated_lipoprotein, peptidoglycan-associated lipoprotein. Members of this protein are Pal (also called OprL), the Peptidoglycan-Associated Lipoprotein of the Tol-Pal system. The system appears to be involved both in the maintenance of outer membrane integrity and in the import of certain organic molecules as nutrients. Members of this family contain a hydrodrophobic lipoprotein signal sequence, a conserved N-terminal cleavage and modification site, a poorly conserved low-complexity region, together comprising about 65 amino acids, and a well-conserved C-terminal domain. The seed alignment for this model includes only the conserved C-terminal domain.	1.56556e-35
NZ_CP053837.1\|WP_026806171.1\|1634062_1634389_+\|cupin-domain-containing-protein	gnl\|CDD\|315619	pfam12973, Cupin_7, ChrR Cupin-like domain. Members of this family are part of the cupin superfamily. This family includes the transcriptional activator ChrR.	3.30772e-16
NZ_CP053837.1\|WP_026806186.1\|1645570_1645960_-\|biopolymer-transporter-ExbD	gnl\|CDD\|223917	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion].	9.0242e-32
NZ_CP053837.1\|WP_026806188.1\|1646535_1646913_-\|F0F1-ATP-synthase-subunit-epsilon	gnl\|CDD\|234796	PRK00571, atpC, F0F1 ATP synthase subunit epsilon; Validated.	2.78854e-36

>NZ_CP053837.1|WP_026806180.1|1640179_1641109_-|ACP-S-malonyltransferase
MKKVAFIFPGQGSQAIGMGRDFFENSDIAKEMVKNASERLNIDFEKLLFEENDNLGKTEFTQPAILLVSCIALAVFKEKIDIQPEFVMGHSLGEFSALVAAGAIDYLDAIELVNKRGTFMAEACSGAGAGMMALVGIDDEKVETICEQEREKGLKVWAANYNMDGQLVLAGLKADLESLVDTFKSAGAKRALVLDMSVASHCELLESAVENLKPYLIEFLNDEFLNVVSNVSANIYSTKDEAVDLLSSQLICPVKYKQSIKAFANEIDYFIEFGQGAVLKGLNKKITDKPTLNVSDMKTLNETLEVLND
>NZ_CP053837.1|WP_026806179.1|1639485_1640187_-|5'-methylthioadenosine/adenosylhomocysteine-nucleosidase
MTKLAIMGAMQEEIDPLLEFFKEYKTIEYADNKYYEVNYKGLDIVIAHSKIGKVFASLTASTLIQKFSCDTLLFSGVAGAINPTLNIGDLIVATKLCQHDLDITAFGHPNGYVPGGKVFVESSKKLLELAKKVATNNNLKVIEGIIATGDQFIHSNDTKEFIEKTFNADALEMEGASVAVVCDALNIPFFILRAISDSANMEAGFDFDEFLDSSAKISSNYLIKIVDELIKNR
>NZ_CP053837.1|WP_026806178.1|1638022_1639429_-|aspartate-ammonia-lyase
MDNLHRMEKDFLGEKEIENDKYYGIQTLRAKENFNITTIGISIFPNFIISLAKVKKACALTNFELGDLSEAQKNAIVKACDLIIDGQYHDQFIVDPIQGGAGTSTNMNANEVIANIALEILGEKKGSYNIIHPNNHVNMSQSTNDAYPTAIKITLYELIFKLQDSLKILRDSFKQKAFEFKDILKMGRTQLQDAVPMTLGQEFKTFATMIDDDIFRLTTAQNLLKEVNLGATAIGTGINTKPEYQALVVKNLKYVTGTDYYKARDMIEATQDTGSFVQISAMLKSIAIKISKICNDLRLLSSGPRAGLNEINLPPMQPGSSIMPGKVNPVMPEVVNQVAFDVIGADATISIASEHGQLQLNVFEPIIAYKLFISINMMRRAFESLAEKCIKGITANPEVCMNNVLNSATLVTSLNPILGYEKSSAVAKEALRTGKRVYDILLEEKLFTKEELEELLQPKNMVQNYDKI
>NZ_CP053837.1|WP_034216573.1|1637535_1638036_-|asparaginase
MTKSKITVINTGGTFNKIYNPLNGELEVPKDGKALEEILSFCHNIDFEVINIISKDSLQMNEDDRKIIVKTIKECKNQNIIVIHGTDTMDLTASFLDEFIKNKRIILVGAMLPISINKIEATLNFAMAMGFLNANIENSIYISMHGSVRNYKNIMKNRELGKFLNC
>NZ_CP053837.1|WP_026806176.1|1636971_1637463_-|hypothetical-protein
MQKEEKKSFIERLFIKVNNIDKVLENRVDTILLRFINMLKYFFIIIMIVYLAICLLSLGHKIISFTLEQGALDFTSIKTILTDGLFTLIVIAIVKTLFIKNGFDYSLTFLEIAFVVIIRKLILLDTIPSETSLLIALGITSSMFFILIIYIHNLKRKWLKEKE
>NZ_CP053837.1|WP_034216571.1|1636570_1636963_+|hypothetical-protein
MKFLELEAAYIVIAIFILIITTIVTTRKFSPKNSFKKIFPVVFIILAILITFHYNMTTTRMAEVEGAFLKGETIICENRTKKEFSKSIMINDNRGWNLKDNVFTNPEYFKGFHSARCVKMLENLEKRDKN
>NZ_CP053837.1|WP_026806174.1|1635538_1636561_+|Lrp/AsnC-family-transcriptional-regulator
MTQIPHLELKNEVLLRIQKNFPLAKKPFLAIANELHTTEEEVLNILNKAKEENIIRQTSAIFDTKKLGYSSSLVAFEIASEDIDNTVDILNTHPGISHNYERNHTFNIWFTIAVAPNSALGLEKTIEILAKKTKAKGFIILPTLKLFKISVKLDTTNKEEKQEELAKRSFTELELTPYHYKFIKLLQMDIKFVSEPFKFIVDELKINYDELFNVIKDFINSGVMRRFASILNHRKAGFSANAMVVWEIDESNSQEFGEKAASFSAVSHCYLRPKYPNWNYNLFTMIHGKTTQDTKDTIDDIAKVIEYKDRMELYSSREFKKVRIIYFSDEFETWEKTNNN
>NZ_CP053837.1|WP_026806173.1|1634847_1635417_-|bifunctional-precorrin-2-dehydrogenase/sirohydrochlorin-ferrochelatase
MAYFPAFLKFDDKSILIVGGGNIALEKLEHLLNFSSNITLISKEFNTQIKNLIEENSLEFFVKAYENGDAKGFDIVIAAIDDFSLQEQIYFETRDYNNTLCNCVDLQKYCDFIFPSYIKKGDLTIAISTSGSSPAFAKNFKEYLKNLIPNGIEDFLKELKELRNTMPKGRERMQFLDKKVKDYIKSWEK
>NZ_CP053837.1|WP_034216570.1|1634465_1634846_-|hypothetical-protein
MSKNSKNLLLIGFVVIFFIVGFIGFKDALPENKNHRVYTILQEYFPYNLEKRTGGLAIVYKDGREKEKPSNAEIFHITDKLEKEWGKEYLKLENSVLIILDKDKKELRKIELSSDEIIWIKQFFGI
>NZ_CP053837.1|WP_026806171.1|1634062_1634389_+|cupin-domain-containing-protein
MNQVLNYDGITSVLLNNLPSKEVAKGINQYILWENKDGKSTAIYEFKPNSKLPFIDSHDIFDEHIYVISGIFNDGINDYEKGAYIINPKGTAHLPQSQEGCMILVTNQ
>NZ_CP053837.1|WP_026806182.1|1641863_1642841_-|hypothetical-protein
MTKYFLSLLVVSSISVAEEVSVYGNSSNSSYGLSSTEKHIMKNQSNISELSTKVGDLKSLIDSINNRLEGLESTSEGDSKRLNATSKKVDDLISRVNSSSLDMDSSNTASNQSADADLTTTINNLKASVSKLTTLVNKINSEYVSSNELEKNMKQFITREEFEALKKSLGVKTQSVTPTKTSDKKDSSLEVEIASQNIIEPKTAEEKAKFMVEAKKDYDAKNFNVAIPKYQKLVDINYKPAENNFYLAEMWYIRKKYDVAINHFKKSAMLNDKAAYMPTLLLHSAISFESIKDKENAKNFYGTLIDLYPNSSEAKEAKNRLSKIK
>NZ_CP053837.1|WP_026806183.1|1642844_1643387_-|OmpA-family-protein
MKKLGLYSVLVSALLFTTGCSEKNAELETDNSVVATDNSGVSDRSGIEDGSFSALEKAGNGNYYMINGQKVLIEHIYFGFDKYNLTADNKEKATNNASKLSPLKADTTVKVFGNTDEWGSDEYNYALGLKRANAVKDVLVSNGVSANISLISLGESNPVCTEKTKDCWAKNRRVEHELSK
>NZ_CP053837.1|WP_026806184.1|1643555_1644830_-|Tol-Pal-system-protein-TolB
MFKIVLFISLMFSSIFANVDGHIDIVKKANSIPKIAIAMASDSSSDFTLSRLKKSLEDDLNVSGHFDLANVTLPQSSYDSTPDLLALSNQGVSIFVNLASLRESNGGYTLKVKLFDVNQRALVLEKNFTTSQLDRSVFLAHKAAISINDFFKAPSIAWMEKFVVFAVYKNAGNADIMIGDYTLTYKQTVVSGGLNIFPKWADKEQKSIYYTSYNYKKPTLVKLNIYNRSKDIIMDSDGMLACSDVNADGSKILVTASPTGQPDIFLYNTKSKSKTQITKYSGIDVGGQFVENDSKIVFVSDRLGNPNIFSQSIGSTAVERMVYHSNNNSSVTSNKNNIVFSSKDSDNELGGKSFNLYLINSKTDNMTRLTSSGVNQFPKFSPDGETLLFIKNYAGVSSLGIIRLEFNKSFLFPLKGERIQSIDW
>NZ_CP053837.1|WP_026806185.1|1644836_1645568_-|TonB-C-terminal-domain-containing-protein
MRNSSSFLISGIVAFSIYFSFCFLVLLYIYSPINQAINITPTTTAIELDMIEEIAEKKMVEKKVEKIVEEKQPVEKATSNSNEKRPDLKSLFANVKETSNKVVKEEVNNVEKSIDPKRFKSKFEKEKKSNNVKIDKLLEDEKTATNTKTKSSSKGDKNDDYGSKIYEMLYSKAPISEDRSLVITVMVSISANGNFDYKFVKKSSSEPYNTAIRLYLDEQKDIAYPVPPNGQGVKYTVDFKFEG
>NZ_CP053837.1|WP_026806186.1|1645570_1645960_-|biopolymer-transporter-ExbD
MYDINQKPDLNITPLVDIMLVLLAILMVTAPVIEFEETLNLPTGSKSQQAQDVAKIDIIITKDRVVTLNKNKVEISNFADNFLLFSKGKDQNTPIYIRADKDLKYDDIVFVLKSVKEAGFFKVALVTDG
>NZ_CP053837.1|WP_026806187.1|1645965_1646529_-|MotA/TolQ/ExbB-proton-channel-family-protein
MITTLLNYLANSSAITYIVLALLSIYLIVTFWIFLYRNSAINALINNEKKSLESLTSRDTIFSPLSALNKCSNNSTSKELLHACEINIIKDASVGISWLAIISSTSPFIGLFGTVVGILESFAKFANQSKVAFSIIAPAISEALVATAAGILVAIFAYTFHQILSRKIYELNIFLKAQSEIIIAAKG
>NZ_CP053837.1|WP_026806188.1|1646535_1646913_-|F0F1-ATP-synthase-subunit-epsilon
MDTIKLSIVTPNGTIFNGDVKTVTLPGKEGEFGVLPGHSSLVSTLTVGVIIIEKENSTEAVAINWGHVKVDEKTVDVLADGAIALTSGKDSEIAKNIEAAKELVNSVKDSNISVAAVEAKINSFA
>NZ_CP053837.1|WP_024775907.1|1646933_1648328_-|F0F1-ATP-synthase-subunit-beta
MKGKVIQVMGPVVDVEFDGYLPEINEAIDVTLADKTKDRLVLEVAAHIGDGRVRTIAMDMTEGLIRGQECIATGGPIKVPVGEAVLGRIFNVIGDPVDEGAAIPADVERWSIHRSAPTFEEQSTKTEMFETGIKVVDLLAPYSKGGKVGLFGGAGVGKTVIIMELIHNVAFKHSGYSVFAGVGERTREGNDLYHEMKDSNVLDKVALCYGQMSEPPGARNRIALTGLTMAEYFRDEKGLDVLMFIDNIFRFAQSGSEMSALLGRIPSAVGYQPTLASEMGKLQERITSTSKGSITSVQAVYVPADDLTDPAPASVFAHLDATTVLNRKIAEKGIYPAVDPLDSTSRILSADIIGQEHYNTARGVQSVLQKYKDLQDIIAILGMDELSESDKLVVARARKIERFLSQPFFVAEVFTGSPGKYVELKDTIAGFQGILDGKYDNIPEMAFYMVGGIDEVLAKAEKMK
>NZ_CP053837.1|WP_026806189.1|1648349_1649234_-|F0F1-ATP-synthase-subunit-gamma
MANLKEIKLKIGSVKNTQKTTKAMKLVSSAKLTRTRQLSEQARSYAIKINEVLSDIAARVSKVQDEGNIGRAFVQNDKPKTVDIVFVTADKGLCGGFNMSTIKTVSKLIADYESKGTKVRLRAAGRKGVDFFSFQGKTLEQRVSDLSSAPDYERASSFIHSAVEDFKNELTDKVIVVYNGFLNMLTQEIKIRELLPVSLEKVEISESSSMLNIEPDDDDEVLRELTDKYIDFNMYYALIDSLAAEHSARMQAMEAATKNAKEKVDSLTVEYNKARQAAITTELIEIISGVEALK
>NZ_CP053837.1|WP_026806190.1|1649244_1650762_-|F0F1-ATP-synthase-subunit-alpha
MGAKIQADEISSIIKERIDNFELNVDVNETGKIVSYADGIAQVYGLKNVMAGELVEFENGEKGLASNLEESSVGIVVLGKGEGLREGTSCKRLGKLLEVPVGEGLVGRVVNALGEPIDGKGAINSTETRYVEEKAPGIMSRKSVHEPLQTGIKAIDALVPIGRGQRELIIGDRQTGKTTVAIDTILNQKGENVVCIYVAIGQKSSSVASVVRTLQEAGAMDYTIVVNASAADSSTLQFLAPYAGVTMGEYFRDNGKHALIIYDDLSKHAVAYREMSLILRRPPGREAYPGDVFYLHSRLLERAAKMSDEKGAGSMTALPIIETQAGDVAAYIPTNVISITDGQIFLETNLFNSGIRPAINVGLSVSRVGGAAQIKATKQVAGTLKLSLAQYRELEAFAQFASDLDEATRRELELGQRMVEVLKQGVNKPLVIEKQIVIIYAGTKGYLNDIAVKDVVRFENELHAFIEQKYSNILDAIKSSQKIDDNTEASLKAALEEFKTVFNAK

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP053837_1	1.2\|436804\|29\|NZ_CP053837\|PILER-CR,CRISPRCasFinder,CRT	436804-436832	29	NZ_MK275621	Clostridium perfringens strain JXJA17 plasmid p3, complete sequence	41169-41197	6	0.793
NZ_CP053837_1	1.2\|436804\|29\|NZ_CP053837\|PILER-CR,CRISPRCasFinder,CRT	436804-436832	29	MT773554	Myoviridae sp. isolate BML_2 genomic sequence	128966-128994	6	0.793
NZ_CP053837_1	1.3\|436869\|30\|NZ_CP053837\|PILER-CR,CRISPRCasFinder,CRT	436869-436898	30	LT960552	Yersinia phage fHe-Yen9-03 genome assembly, complete genome: monopartite	71688-71717	7	0.767
NZ_CP053837_1	1.3\|436869\|30\|NZ_CP053837\|PILER-CR,CRISPRCasFinder,CRT	436869-436898	30	LR596615	Yersinia phage fHe-Yen9-04 genome assembly, chromosome: I	71372-71401	7	0.767
NZ_CP053837_1	1.3\|436869\|30\|NZ_CP053837\|PILER-CR,CRISPRCasFinder,CRT	436869-436898	30	NC_042116	Yersinia phage fHe-Yen9-04 genome assembly, complete genome: monopartite	71372-71401	7	0.767
NZ_CP053837_1	1.3\|436869\|30\|NZ_CP053837\|PILER-CR,CRISPRCasFinder,CRT	436869-436898	30	NZ_MF547664	Clostridioides difficile strain LIBA-6289 plasmid LIBA6289, complete sequence	3684-3713	8	0.733

1. spacer 1.2|436804|29|NZ_CP053837|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MK275621 (Clostridium perfringens strain JXJA17 plasmid p3, complete sequence) position: , mismatch: 6, identity: 0.793

ctttaatatcgttatcattctttaatcgt	CRISPR spacer
ctttaatttccttatcattctttaaatca	Protospacer
******* ** ************** .

2. spacer 1.2|436804|29|NZ_CP053837|PILER-CR,CRISPRCasFinder,CRT matches to MT773554 (Myoviridae sp. isolate BML_2 genomic sequence) position: , mismatch: 6, identity: 0.793

ctttaatatcgttatcattctttaatcgt	CRISPR spacer
ctttaatatcgttttcattttttcttgat	Protospacer
************* *****.***  * .*

3. spacer 1.3|436869|30|NZ_CP053837|PILER-CR,CRISPRCasFinder,CRT matches to LT960552 (Yersinia phage fHe-Yen9-03 genome assembly, complete genome: monopartite) position: , mismatch: 7, identity: 0.767

gtgaaacataatcaggataagttctaaaag	CRISPR spacer
ctgaaacaaaatcaggataaattctttttg	Protospacer
 ******* ***********.****    *

4. spacer 1.3|436869|30|NZ_CP053837|PILER-CR,CRISPRCasFinder,CRT matches to LR596615 (Yersinia phage fHe-Yen9-04 genome assembly, chromosome: I) position: , mismatch: 7, identity: 0.767

gtgaaacataatcaggataagttctaaaag	CRISPR spacer
ctgaaacaaaatcaggataaattctttttg	Protospacer
 ******* ***********.****    *

5. spacer 1.3|436869|30|NZ_CP053837|PILER-CR,CRISPRCasFinder,CRT matches to NC_042116 (Yersinia phage fHe-Yen9-04 genome assembly, complete genome: monopartite) position: , mismatch: 7, identity: 0.767

gtgaaacataatcaggataagttctaaaag	CRISPR spacer
ctgaaacaaaatcaggataaattctttttg	Protospacer
 ******* ***********.****    *

6. spacer 1.3|436869|30|NZ_CP053837|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MF547664 (Clostridioides difficile strain LIBA-6289 plasmid LIBA6289, complete sequence) position: , mismatch: 8, identity: 0.733

gtgaaacataatcaggataagttctaaaag	CRISPR spacer
ctcttacataatcagaatatgttctaaata	Protospacer
 *   **********.*** ******** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

213990 : 227269

Bacillus_phage(37.5%)

tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_051487643.1\|213990_214722_-	C40 family peptidase	S5MM68	Bacillus_phage	1.8e-12	38.6
WP_026806666.1\|214736_215333_-	C40 family peptidase	S5MM68	Bacillus_phage	1.2e-11	36.3
WP_026806665.1\|215450_216005_+	hypothetical protein	NA	NA	NA	NA
WP_026806664.1\|216014_216728_+	SIMPL domain-containing protein	NA	NA	NA	NA
WP_026806663.1\|216761_219446_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	1.1e-70	32.8
WP_026806662.1\|219633_219951_+	thioredoxin	A0A0K2FIM3	Achromobacter_phage	4.9e-12	39.0
WP_026806661.1\|220156_221086_+	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	1.2e-58	44.3
WP_026806660.1\|221090_221864_+	4-hydroxy-tetrahydrodipicolinate reductase	NA	NA	NA	NA
WP_026806659.1\|221879_223226_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.5e-54	33.7
WP_034216723.1\|223225_224191_+	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	4.3e-14	31.5
WP_026806657.1\|224202_225099_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_026806656.1\|225214_227269_+	UvrD-helicase domain-containing protein	A7KV33	Bacillus_phage	5.9e-106	37.3

DBSCAN-SWA_2

247005 : 254046

Campylobacter_virus(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_026806636.1\|247005_247998_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2I2L4E3	Orpheovirus	3.6e-32	34.9
WP_026806635.1\|248226_248571_+	histidine triad nucleotide-binding protein	NA	NA	NA	NA
WP_026806634.1\|248592_249528_-	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA
WP_026806633.1\|249575_250835_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_024775682.1\|250956_251187_-	acyl carrier protein	M4QDG5	Prochlorococcus_phage	1.2e-07	66.0
WP_026806632.1\|251280_252024_-	3-oxoacyl-ACP reductase FabG	Q06VL0	Trichoplusia_ni_ascovirus	8.3e-18	29.4
WP_026806631.1\|252078_252843_-	7-carboxy-7-deazaguanine synthase QueE	D5GV09	Campylobacter_virus	5.5e-57	46.8
WP_026806630.1\|252835_253357_-	6-carboxytetrahydropterin synthase	D5GVR0	Campylobacter_virus	8.4e-41	48.6
WP_026806629.1\|253356_254046_-	7-cyano-7-deazaguanine synthase QueC	A0A0E3JPW6	Enterobacteria_phage	1.1e-32	35.7

DBSCAN-SWA_3

1284559 : 1293205

Tupanvirus(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_026805545.1\|1284559_1286068_-	amino acid adenylation domain-containing protein	A0A2K9KZV5	Tupanvirus	6.8e-51	27.2
WP_026805544.1\|1286078_1286726_-	hypothetical protein	NA	NA	NA	NA
WP_026805543.1\|1286726_1287800_-	DegT/DnrJ/EryC1/StrS family aminotransferase	A0A2K9L0G1	Tupanvirus	1.7e-27	31.0
WP_026805542.1\|1287796_1288834_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	7.7e-78	46.1
WP_026805541.1\|1288823_1289678_-	glucose-1-phosphate thymidylyltransferase RfbA	K7QKA7	Escherichia_phage	2.0e-100	65.2
WP_026805540.1\|1289682_1290927_-	nucleotide sugar dehydrogenase	A7IWZ0	Paramecium_bursaria_Chlorella_virus	1.1e-25	28.1
WP_026805539.1\|1290923_1292015_-	NAD-dependent epimerase	A0A2K9L0I7	Tupanvirus	1.1e-34	30.1
WP_034216319.1\|1292029_1293205_-	nucleotide sugar dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	8.9e-115	56.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP053838

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP053838_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053838_1

35847-35990

Orphan

Consensus_repeat	Method
TTCCTGCTCCTTTAGATGATCCAT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP053838_1

>merge|NZ_CP053838|1|35847-35990|CRISPRCasFinder
TGCCTGCTCCAAGGGAAGAACCATCACGAACTGTGTCACCTTTGACATTCAATATAGCTTTTCCTGCTCCTTTAGATGATCCATCACGGATGATACCATCCTTTATATTTCCCAAAGAGCTTCCTGCTCCTTTAGATGATCCAT

>NZ_CP053838|1|1|35847-35990|CRISPRCasFinder
TGCCTGCTCCAAGGGAAGAACCAT	CACGAACTGTGTCACCTTTGACATTCAATATAGCTT
TTCCTGCTCCTTTAGATGATCCAT	CACGGATGATACCATCCTTTATATTTCCCAAAGAGC
TTCCTGCTCCTTTAGATGATCCAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053838.1\|WP_026806315.1\|37377_37836_-\|response-regulator	unknown	unknown	gnl\|CDD\|381085
NZ_CP053838.1\|WP_154656345.1\|44428_44605_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053838.1\|WP_026806310.1\|32808_33651_-\|DUF2971-domain-containing-protein	unknown	unknown	gnl\|CDD\|378585
NZ_CP053838.1\|WP_026806311.1\|33677_34862_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053838.1\|WP_026806319.1\|42626_44213_-\|type-II-toxin-antitoxin-system-HipA-family-toxin	unknown	unknown	gnl\|CDD\|377920
NZ_CP053838.1\|WP_026806322.1\|46438_47728_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053838.1\|WP_081754538.1\|30072_30708_-\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|225724
NZ_CP053838.1\|WP_026806312.1\|35018_35582_+\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|239737
NZ_CP053838.1\|WP_026806316.1\|37838_41237_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053838.1\|WP_026806320.1\|44604_44964_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053838.1\|WP_026806306.1\|25222_25843_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053838.1\|WP_026806309.1\|30922_32269_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053838.1\|WP_119173167.1\|23212_24007_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053838.1\|WP_026806318.1\|42298_42550_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP053838.1\|WP_026806308.1\|27904_29572_-\|DUF262-domain-containing-protein	unknown	unknown	gnl\|CDD\|377008
NZ_CP053838.1\|WP_026806305.1\|24499_25129_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053838.1\|WP_026806321.1\|44977_46435_-\|DUF2974-domain-containing-protein	unknown	unknown	gnl\|CDD\|238287
NZ_CP053838.1\|WP_051489036.1\|41543_41960_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053838.1\|WP_026806314.1\|36169_37381_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|350159
NZ_CP053838.1\|WP_026806307.1\|25922_27905_-\|DUF262-domain-containing-protein	unknown	unknown	gnl\|CDD\|377008

Protein	Function_ID	Function_description	E-value
NZ_CP053838.1\|WP_026806315.1\|37377_37836_-\|response-regulator	gnl\|CDD\|381085	cd00156, REC, phosphoacceptor receiver (REC) domain of response regulators (RRs) and pseudo response regulators (PRRs). Two-component systems (TCSs) involving a sensor and a response regulator are used by bacteria to adapt to changing environments. Processes regulated by two-component systems in bacteria include sporulation, pathogenicity, virulence, chemotaxis, and membrane transport. Response regulators (RRs) share the common phosphoacceptor REC domain and different effector/output domains such as DNA, RNA, ligand-binding, protein-binding, or enzymatic domains. Response regulators regulate transcription, post-transcription or post-translation, or have functions such as methylesterases, adenylate or diguanylate cyclase, c-di-GMP-specific phosphodiesterases, histidine kinases, serine/threonine protein kinases, and protein phosphatases, depending on their output domains. The function of some output domains are still unknown. TCSs are found in all three domains of life - bacteria, archaea, and eukaryotes, however, the presence and abundance of particular RRs vary between the lineages. Archaea encode very few RRs with DNA-binding output domains; most are stand-alone REC domains. Among eukaryotes, TCSs are found primarily in protozoa, fungi, algae, and green plants. REC domains function as phosphorylation-mediated switches within RRs, but some also transfer phosphoryl groups in multistep phosphorelays.	6.78811e-05
NZ_CP053838.1\|WP_026806310.1\|32808_33651_-\|DUF2971-domain-containing-protein	gnl\|CDD\|378585	pfam11185, DUF2971, Protein of unknown function (DUF2971). This bacterial family of proteins has no known function.	1.45493e-08
NZ_CP053838.1\|WP_026806319.1\|42626_44213_-\|type-II-toxin-antitoxin-system-HipA-family-toxin	gnl\|CDD\|377920	pfam07804, HipA_C, HipA-like C-terminal domain. The members of this family are similar to a region close to the C-terminus of the HipA protein expressed by various bacterial species. This protein is known to be involved in high-frequency persistence to the lethal effects of inhibition of either DNA or peptidoglycan synthesis. When expressed alone, it is toxic to bacterial cells, but it is usually tightly associated with HipB, and the HipA-HipB complex may be involved in autoregulation of the hip operon. The hip proteins may be involved in cell division control and may interact with cell division genes or their products.	3.54614e-32
NZ_CP053838.1\|WP_026806318.1\|42298_42550_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.25187e-06
NZ_CP053838.1\|WP_026806308.1\|27904_29572_-\|DUF262-domain-containing-protein	gnl\|CDD\|377008	pfam03235, DUF262, Protein of unknown function DUF262.	3.70768e-24
NZ_CP053838.1\|WP_026806321.1\|44977_46435_-\|DUF2974-domain-containing-protein	gnl\|CDD\|238287	cd00519, Lipase_3, Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. .	1.11377e-07
NZ_CP053838.1\|WP_081754538.1\|30072_30708_-\|HNH-endonuclease	gnl\|CDD\|225724	COG3183, COG3183, Predicted restriction endonuclease [Defense mechanisms].	6.3122e-38
NZ_CP053838.1\|WP_026806314.1\|36169_37381_-\|hypothetical-protein	gnl\|CDD\|350159	cd09008, MTAN, 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidases. This subfamily includes both bacterial and plant 5'-methylthioadenosine/S-adenosylhomocysteine (MTA/SAH) nucleosidases (MTANs): bacterial MTANs show comparable efficiency in hydrolyzing MTA and SAH, while plant enzymes are highly specific for MTA and are unable to metabolize SAH or show significantly reduced activity towards SAH. MTAN is involved in methionine and S-adenosyl-methionine recycling, polyamine biosynthesis, and bacterial quorum sensing. This subfamily belongs to the nucleoside phosphorylase-I (NP-I) family, whose members accept a range of purine nucleosides as well as the pyrimidine nucleoside uridine. The NP-1 family includes phosphorolytic nucleosidases, such as purine nucleoside phosphorylase (PNPs, EC. 2.4.2.1), uridine phosphorylase (UP, EC 2.4.2.3), and 5'-deoxy-5'-methylthioadenosine phosphorylase (MTAP, EC 2.4.2.28), and hydrolytic nucleosidases, such as AMP nucleosidase (AMN, EC 3.2.2.4), and 5'-methylthioadenosine/S-adenosylhomocysteine (MTA/SAH) nucleosidase (MTAN, EC 3.2.2.16). The NP-I family is distinct from nucleoside phosphorylase-II, which belongs to a different structural family.	3.24417e-17
NZ_CP053838.1\|WP_026806312.1\|35018_35582_+\|recombinase-family-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	1.18969e-58
NZ_CP053838.1\|WP_026806307.1\|25922_27905_-\|DUF262-domain-containing-protein	gnl\|CDD\|377008	pfam03235, DUF262, Protein of unknown function DUF262.	8.3355e-14

>NZ_CP053838.1|WP_026806312.1|35018_35582_+|recombinase-family-protein
MNVGYARVSTSSQNLENQIDQLKSAGCKKIFSEKKSGKNESNREQFKIMMDFVREGDVLYITKLDRLARSVIDLHNIAKFLENKDVNLKVLHQNIDTTSPAGRLLFTMLGAIAEFERDLINERVREGIEAAKKKGVQFGRRAILSTKEKNVIYKQHEKGKSVAFLSKIFHVARNTIYRAIKDIAKKK
>NZ_CP053838.1|WP_026806311.1|33677_34862_-|hypothetical-protein
MNVLEFNFTKEEFIFECCKNINLSTNTIADDIYYSFISFITPSFSINNNIQEIKHKYNNNYYDKFLSLQDYIDKNSLTLHYNNFTIYSAKEEIINVDELKLPSFIKQQPVDYGYDVIKYIKVKKANLKTKNKIDIEILGLIFDKKILSEIFNSLTKFNEEILLPSHSGVWEWRQTFYNKITGETYFCNCFKKAIEKSKKDSQLSNTHQHIEKALENNSFKESICHICTNKNSDLMYCSKMYGSEVKVRYGAYIKKLEIEKEITERDAENEIRVIKNIAKIGERWINETLLFNYIDMIFPEYNVIREASPQWLDRQRLDIFIPELNLAVEYQGAQHFKAVPLFGGVEGLKKAQERDKIKKLRCKQNKVTLIYFTYKENLSENLIMKKLKHFLEKQ
>NZ_CP053838.1|WP_026806310.1|32808_33651_-|DUF2971-domain-containing-protein
MPFREIFFENFLLRASHINTLNDPFEMEPSIEWWANLFLELKHYRFGQTKEEIFSYIRMQNLNSPWRHLGTDLFKDHGIISFTETKDNILMWSHYSNNHTGIVIEFDLAHPFFSKKFIEKEHNYLGNPQKVLYRKERLISSDYLLEPYFHKSSDWIYEQEYRMLLKLSNSDKILIHKDYCDKKFEDECVFSSYKEELEKINENFFEIRNSYNTSFLNNPNTMFMFKVSPDAIKSVYLGCRMKDEDINKLIELKEREDLKHIKLYKSSIHDKRYELNFFEI
>NZ_CP053838.1|WP_026806309.1|30922_32269_-|hypothetical-protein
MLFETYGMIVPEKGTCPNYELFYMFYSLNIKQNLLANHLFNEVKSQLPVMSLEIKESINHKLQEIDSILPAMGLKREKTEREEYNISILNDDLYLRRKYFDGNYEEFINYITNIQQLITLYSSFENTIKSYLITQGKNADERVFQKKLLDEVCSINHKFISKFNDLYKNFTQNDFTVIWKYFTFIRNLYTHSSGVIDNDFIKEMDKIKNKITDMINRNFEFIERNLFPNNYNILRTDNFIENDLFIITEIELRFFRNFIIYVWEAIYLSHYNLSKKNYVSSHIKFNLEHNQFKFHLIQTHDESEALNRMQTFYTKKMSNFYISTYVCPNCTKEPVVLYKTLYHPNISLMKITQQEEHKDINMERVFTCPHCRSFFISKYKERLSDNNGNNLLNLNDDDYLLILEQFNIEGTPYPPNSEENIESELNLTMQINQLETLLNDLKNNRKKY
>NZ_CP053838.1|WP_081754538.1|30072_30708_-|HNH-endonuclease
MNENKLQKGNKIYFAYDGYIVAKAKFLGEIKHDNNRHEKFIYGHKLNNVEVINSNIQLNTKIVSTRTTYIDNVEKQNELERVLKSDIIYPDEIEDNDLFEGTKKQITVNAYERSSQARQECINEYGYKCVICNFDFENIYGEIGHNFIHVHHIKPLSEIDAKYKINPIEDLRPVCPNCHAMLHKRKPAYGIEEIHDKIKQTTYYKSLEKNI
>NZ_CP053838.1|WP_026806308.1|27904_29572_-|DUF262-domain-containing-protein
MENILELKTINELQQFSFYIPSYQRGYRWSKNEVKDLLNDISEFTPRLVDDTDEKTWYCLQPIVTKKKENGQFEVIDGQQRLTTIYLILHFMNSRLREPEKTFDLDYETRENSTLFLQDLTRETYNDSNIDFYHISNAYETVCDWFNKPNFNINDFESKFKFNSKVIWYESSEEDPIEIFTRINIGKIPLTNAELIKALFLNSANFDKKKNDKIRLKQLEISSEWDYIEQSLQNNRFWYFLNGNNITTNRIEFIFDLMNDEKDYTDNYSTFRFFNKKFIKKDQKTIENNWLEIKKYFQRFQEWFEERDLYHKIGYLIAIESVTIADLYNKSINLSKTEFRTLLDEAIKSDLKNVTLESLQYGDKRVKKVLLLYNILTMLNNENDNAYFPFDIYKNEKWDIEHITSITDTIPKQKNSWLNDAKVFIDVSKEDGKKLKNRADTCDCEDDVEFEVLFKDIVKHFNSYLEDEDINDISNLALLDSETNRGYKNAVFPLKRKTIIDREKKGIFIPICTKNVFLKYFSSYPPKISFWTLEDRENYYKDLEKVLKDYVEKEI
>NZ_CP053838.1|WP_026806307.1|25922_27905_-|DUF262-domain-containing-protein
MSDVQYQGKITNFWELLKEHNIVIPIIQRDYAQGRKDKEEIRDNFLNALFQSINTDTPIKLDFIYGSVEDGDSQPLDGQQRLTTLFLLHWYAAVKSQLLNKDIMNVLKKFTYETRISSREFCNTLVLNPIQITKTIVLSSQIVDSAWFFLSWKKDPTIDAMLRTLNDIHKYFFDIENLWEKLTSDANLISFYHIELEDIGLTDDLYIKMNARGKLLSSFENFKASFQKRINDNKWDKEKEFQDTFAFKIDTKWTDLFWIHRKENKIDEAFNRFISTIAMCRQSINKTDNRLQIIKELQDKPDMVRTNMFDENDFIYLTECFDTYCKVFDENLNVKHNFPLFQHAPAENIFSGIVFEGQNASYSLKVLFYAQTEYLIKVSEFNQEKFQDWMRVVRNIVARGDVEKTGNRPTIIRDPGQFYGVINLIYELSSGCEDIYTYLSSNQIKSSFAKEQIEEEKLKAKLIVANPDNKSVIFNTEDTDLLQGKISFALYCIDYEAGMALDIKRLESVKNVISTYFKDDKDINNDLRRALLTIADNDGNYHYYKYWWSFWNVVNANKRSLIDSYLRSLEFYIYGRFSEEYKIYIKKLILKLMNNNLQEIVTNFTPPNDMPNWKIRLIKEPSLLNEMCKSNHIAIPEDEACCYLLKSMRPRDIDGCYLVK
>NZ_CP053838.1|WP_026806306.1|25222_25843_-|hypothetical-protein
MSLKDEIKKYLIDDIELVKKIEKLMIKVDIISDNKRDMLLAGFSRNVLSHFISINYLMEKKLYNSAFALERIFFENIIKLKYMYYIMDDPKIVTIYDANSWDKHFPSIGDMATKIDEKLETNFYSNVKQNAYKIMNDYTHTGANQIARNFGESDASIESNFSDELILDTLKGNKTLLKTAMIVFLEGIGLKNAFITKDEIEAYLEY
>NZ_CP053838.1|WP_026806305.1|24499_25129_-|hypothetical-protein
MEELNLLLSSLSLDKGFATVLAAIFGATIAAVISITVASRSFKQQIILLDKNLEHQKKQFYIEYKERQESIQQNKIDSFNNKKTEHLEKTYYLLSKLKFQCSPTSSFILTRLKDLEKFDAYYTNEIVEKINQIQTSVRLYFPSLKDDIDNINGKANMFWGYQQQYLSQDPSSDAAQSNLGEVHKAVHEISSLAGKMQNNLKNEFDKIYT
>NZ_CP053838.1|WP_119173167.1|23212_24007_-|hypothetical-protein
MQNIFKCYMCDRNAVSSEHVPPKNLFPEQKDVGKDYRQYLITVPSCEIHNNHKSKDDEFLMVSLAGIFGNNSIGYLHKFTKVNRAIRRTSNRLLDKAFTKRKHYHLKSDNGFLEVIWGTPDHTRLISCFEHIAYGLHYHHLKKCFKGKIKVLLGYLHSEDKSNNNFVQFIKHQAKIDLKDIPKYGANEDVFYYQFSNPDNYGTYLVHMRFYGGIDVYGSFLPEDKQEPYDLGIAIANACDEVIFKVEDKEYRVKNANKPLERNI
>NZ_CP053838.1|WP_026806314.1|36169_37381_-|hypothetical-protein
MKILFIEDNELKKEKIITVLINANVAVRSDFTVCTNIIDAKKILRSTMFDVLLLDMRLPNRADSQEIQSMAGLDFLKEFQNDRRYHQPKEIIGITECEEELSRVKKDFHENLLHIIYYHSSKNEWEKLLVDRLEYLISCEQDTNEYDYDIAIICALENPEFKAIKDLSENWVNVKKDNTSLSFYETFFEFEQKKLKVIAISIDKMGMVPTAVLATQTIEMFRPRYLTMTGIAAGIKGEVELGDILVFNPSWDSGSGKLKINDDGKDLFEIDPKQETIDGDIILKIKELSNDTQFLNKLREDWKYSKIKNVLSVHTGPVASGAAVIANENITSAIKLQSRKLLGIEMEAYGLIYASKHATKPKPEPLVIKSVCDFADKDKNDGFQEYAAYTSANFLYEYAKRYI
>NZ_CP053838.1|WP_026806315.1|37377_37836_-|response-regulator
MQCLIIEDDNYKSEHLQNILQEYFDLSVEIKTAYKSGLIEALKPKYDFILLDMSMLTFDISSQEKGGRPRHFAGKEIMLQMKRRNILTPVIIITQFENFGEDTEKINLYDLTKQLEDIGYQGYKKTIFYNMTKNEWQDDLIETIRFIQGDKK
>NZ_CP053838.1|WP_026806316.1|37838_41237_-|hypothetical-protein
MSKKKKSKLNSEQKDFFLKIARLKNPIWITNYLKKDAAMRLVENNFSKLISNPLIKNNILGSTFPIDYKDIETEAMVSQGTLEQEVWWTYLNVIYHSEKINLFISKSEQFNNLLLYAKYEEASNILNEIKYELGLSHWYIENKLLLLSKMNGLREQKEYAETIRKELPNASALLVYHFSQKLENELSYEQYDKNFKKMWRDYPNIKTYFEFKANSLNADPENLVYFLYFERESPTIDKYISLKKTLFSICSNNNYYSLPVDFLNKYLIKLDNNIKDIELKPLLIKSTKLNYNDIDIDNSKYIRILDLYTMGYYKESYDLCLKELENYLTFNINLIEILIKSEIRCATDDNLIEVSIDNNSIIFNIYEYYKSIILKDKNLINSINKLLKIALELSSLSISTVITQFIYKNIPFYNIPVADSSLKTGGLHTFLYDVREQSIIDDARYRILITDMQKTYQESITYQLLNKENFNIDEKIPSFRLQKYNIKINPETIPKEQQIEIYKDIIKNGNILDKYYAIVELSYLYFKYKEIQNCIKAIVEGYLFNKSLIYNLPLQEIIEYIEQYHSTDFDKDIETSILYELYSKYISNKFDSQKMIRYEIFLEENGYTKPSELINNYERFDKNKLDFFLQFNCKSQILDSSIYFENTEEVESERINICQFLVEQKVSSSHILLKEIKNITEQSLISKYIQVIEQNKIYVNEEGIKSKLQSNLAEYYLRYIDLVKNSTTLKRDLNNKVLINNTFGVNIPYPKNDIIPLLQNALSDVKEYFVFSNEYGLNGFISTNIRHGKLYNFLTSSLIKSNLFIKQDNAYWQINFQIDAKIMEILATFSNDIEKSINGFKDQYIQIVTDKENTKNGLFRYDLTEEISIAIYNQLDEEPSFEEFENILLEVLWRHTEINLENIRYIILNELIPKIQHIFKELNLKIETIQNKNNLSEIRDVIRHESTILQRNLETLKQWFTRQTISSIADFEFTLPVSITKEVIKNVHANNFIKLNADIKIKDKFKGLFLKGFVDILYILFDNAIKHSDSECEKINLLLDKSDEKQYEYRLYVTNQIKENLNIKLNTQKIEEIRDNIRNKMYGQSVGTEGGTGFYKIVKILTYDMVMGNRFIDFYYQGDKFIVEIHFGKRKE
>NZ_CP053838.1|WP_051489036.1|41543_41960_-|hypothetical-protein
MELPSINLFSFIFNLKKEKPKNGYFLEFNKKGSEDSRHHIFKENKVIDSRIDLKNISMGVLWGYNGAGPRQAALAILADYKNDEFALKHYEQFAIDVINKLKYDRNDFLKFTTIQDWIDNLHFTADYAELEDDKSEKY
>NZ_CP053838.1|WP_026806318.1|42298_42550_-|helix-turn-helix-transcriptional-regulator
MKNSEFSKDDIQKIYKTIGKNVKRIREEKGISQLNLAMAIGHKSVGVISNCELCLQNKHFNIEQLIKIADVLEVNIKDFFESI
>NZ_CP053838.1|WP_026806319.1|42626_44213_-|type-II-toxin-antitoxin-system-HipA-family-toxin
MKLKPIITAILEELHMENKFVSLKFLINKLDKYKPSPRTLQSILKELIECNRVITQGSASTTEYAINDVISNYRRFEFIYVVKDNEIAGILFKLSDRYRFYYDNEFLINKSKPIPSLDLQILPFDFNNIPAVFEENIPEGINREILETTSRVADEFQILTMLEDNIGDLSFTKTREIVKNKSSNPPYLSSLNEILGSNPKINVLKDLVVDIEDEILFPDGYDISKLEIKKAHGISGFQYKKLVNIDTDNKKIVLDDSAHAYILKPYSKPKANKDNENYFPHISLNEHLFMSFAKNTLGFRVPYSAIVKNENDEEYHYIVKRFDRLGLYRYAKSTFAVFLGLRSDNKYDTTSEKLFERIAKEIINPYERMELLKHYVYSVIIQHEDMHTKNLSLIYDRELVFFAPLYDVACTGFYDTSKGYDSHLTINGKQSNIRPNDFKPLCERLKVNFKEFKKEAHTIAELYERELPSYIEEIKSLGSIPFYRKIQKTKIGEGTYLKVSKEPIEFHEVLSKFHKMRVEHLKEHGWII
>NZ_CP053838.1|WP_154656345.1|44428_44605_-|hypothetical-protein
MSQIDKKTAIEHVNDFFEGIYDTAIKAPISFGDFLARVSGYRDYQFTQGSVLTINTHS
>NZ_CP053838.1|WP_026806320.1|44604_44964_-|hypothetical-protein
MSLLTKECEVCGTKIRKLQSIWNIYLLKTGVNIKCPNCNLKYKTYKSISFFGSFYTWSGASFLVFIITVPIFWDFLENIFNLKLGAEVWIYTFIVLSLVEFIIMLVISLKRTVNNTRNN
>NZ_CP053838.1|WP_026806321.1|44977_46435_-|DUF2974-domain-containing-protein
MAKIIDIANFANDAYEVESKLNLPSIDFKKLDVKYDGSNGFQGSAYFNSKTNELVVAYAGTDFTSIKDLKADLGIGLNLAIGQTDNAKDFLSRAFNNVTENLGVNSNNINVTITGHSLGGYLVQQVMDNPPINSENIAGVVFNSPGISSDKFLPNLISISDANDPVTGIGGGIITTNHITLGNTSGPLAAHSMDNMINTLEERPFISNLDVKGINNLEPDIKSVVFKDSENSIVYITEKKAEFYKKLIENNPELIRKLEIEYNNQKAVNAVKDFNNGSQDFGEVIKWVSNSPKAISEFKSILEKKGNDNLLKYIQDENSFKNAPNEIQKVIVLETQEGNALSTQLGTSIGGSIGSVIIGNNDFPNIEKIAISTSTTVVGQNVGEYIFWDSKNGNGSGAFDDIGADFKNTLQGAVVSFALSSFFAKNDTLSDILGMDGTFIGGLVDFTVSYTLGYYGSQAVSELFASLISINNIDYKNNKIFKNVA
>NZ_CP053838.1|WP_026806322.1|46438_47728_-|hypothetical-protein
MKPYIKVFLSLLIVSVFCGCSATKLSKYDIKETYSEKQVLVYDKTINLPTKGYIGNIQFSPTNKDELTIVSIDKIEYGSYRTDHFMVIDLKNGKLKKDIKLDKTKDTYDVEFIKYSDDGKKLYLMKIYEKVLKNICQKNITVYETPEKTTFEKKCEDRLVTELIKDKFTILDLETGQLSPYYSYNCDELIPKELNNNEIESYCDVSLNSPINTTYFYSGNKKQNKTSKGIAIYDKNSFKPKKLITLDDKLDTEFRIEVVSEDGQYILFKKDFRDNNEKFKNSQYSVYDLKNNRVIHNFDTTLWMTGRAFIDKDNLIFTYSTDFTEIGNTLYSKKHLSILNLVTNEKKIFSDCGESGGKCYLTEGIYNLNDRYIMWRDYSKYHIFDKKDMKIVQEFNGAKKFAVSRDFKRVAFYTIMPNELHLFDIVQGE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP053838_1	1.1\|35871\|36\|NZ_CP053838\|CRISPRCasFinder	35871-35906	36	NZ_CP053838	Aliiarcobacter faecis strain CCUG 66484 plasmid pAFAEC, complete sequence	35871-35906	0	1.0
NZ_CP053838_1	1.2\|35931\|36\|NZ_CP053838\|CRISPRCasFinder	35931-35966	36	NZ_CP053838	Aliiarcobacter faecis strain CCUG 66484 plasmid pAFAEC, complete sequence	35931-35966	0	1.0

1. spacer 1.1|35871|36|NZ_CP053838|CRISPRCasFinder matches to NZ_CP053838 (Aliiarcobacter faecis strain CCUG 66484 plasmid pAFAEC, complete sequence) position: , mismatch: 0, identity: 1.0

cacgaactgtgtcacctttgacattcaatatagctt	CRISPR spacer
cacgaactgtgtcacctttgacattcaatatagctt	Protospacer
************************************

2. spacer 1.2|35931|36|NZ_CP053838|CRISPRCasFinder matches to NZ_CP053838 (Aliiarcobacter faecis strain CCUG 66484 plasmid pAFAEC, complete sequence) position: , mismatch: 0, identity: 1.0

cacggatgataccatcctttatatttcccaaagagc	CRISPR spacer
cacggatgataccatcctttatatttcccaaagagc	Protospacer
************************************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP053837

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP053838

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection