CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP053841	Campylobacter blaseri strain LMG 30333 chromosome, complete genome	3 crisprs	cas1,cas2,csn2,csa3,DEDDh	0	7	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP053841_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053841_1

70900-71466

TypeII

Consensus_repeat	Method
GTTTGAGAGTTGTGTAAAATTTGATGGTAATAAAAC	PILER-CR
GTTTGAGAGTTGTGTAAAATTTGATGGTAATAAAAC	CRISPRCasFinder
GTTTGAGAGTTGTGTAAAATTTGATGGTAATAAAAC	CRT
GTTTGAGAGTTGTGTAAAATTTGATGGTAATAAAACTAATTG	PILER-CR

8 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of NZ_CP053841_1

>merge|NZ_CP053841|1|70900-71466|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GTTTGAGAGTTGTGTAAAATTTGATGGTAATAAAACTTTAGAAGATTTGATTAATTACAATAACGAGTTTGAGAGTTGTGTAAAATTTGATGGTAATAAAACCAAAATGTGAATAAAGATGGCTACTATATAGTTTGAGAGTTGTGTAAAATTTGATGGTAATAAAACTAAATGTTGAAAAACATTATCCTACCCTGTGTTTGAGAGTTGTGTAAAATTTGATGGTAATAAAACGAATTGCTGAGGGAAACTTAATCTCCGATAGTTTGAGAGTTGTGTAAAATTTGATGGTAATAAAACTCTAAGAATAATCTTTCTAACGAATAGTGAGTTTGAGAGTTGTGTAAAATTTGATGGTAATAAAACCTTCATTGCTTGTTATACTAACAACAGCGTTTGAGAGTTGTGTAAAATTTGATGGTAATAAAACTTATTGTAATTGATTAAATCTTCTAAAGTGTTTGAGAGTTGTGTAAAATTTGATGGTAATAAAACAGATATTTTTTTGTTTTTTGTAGATTAATAGTTTGAGAGTTGTGTAAAATTTGATGGTAATAAAACTAATTG

>NZ_CP053841|1|1|70900-71199|PILER-CR
GTTTGAGAGTTGTGTAAAATTTGATGGTAATAAAAC	TTTAGAAGATTTGATTAATTACAATAACGA
GTTTGAGAGTTGTGTAAAATTTGATGGTAATAAAAC	CAAAATGTGAATAAAGATGGCTACTATATA
GTTTGAGAGTTGTGTAAAATTTGATGGTAATAAAAC	TAAATGTTGAAAAACATTATCCTACCCTGT
GTTTGAGAGTTGTGTAAAATTTGATGGTAATAAAAC	GAATTGCTGAGGGAAACTTAATCTCCGATA
GTTTGAGAGTTGTGTAAAATTTGATGGTAATAAAACTCTAAGAATAATCTTTCTAACGAATAGTGAGTTTGAGAGTTGTGTAAAATTTGATGGTAATAAAACCTTCATTGCTTGTTATACTAACAACAGCGTTTGAGAGTTGTGTAAAATTTGATGGTAATAAAACTTATTG	TAATTGATTAAATCTTCTAAAGT
GTTTGAGAGTTGTGTAAAATTTGATGGTAATAAAACAGATAT	TTTTTTGTTTTTTGTAGATTAATAGTTTGA


>NZ_CP053841|1|1|70900-71460|CRISPRCasFinder
GTTTGAGAGTTGTGTAAAATTTGATGGTAATAAAAC	TTTAGAAGATTTGATTAATTACAATAACGA
GTTTGAGAGTTGTGTAAAATTTGATGGTAATAAAAC	CAAAATGTGAATAAAGATGGCTACTATATA
GTTTGAGAGTTGTGTAAAATTTGATGGTAATAAAAC	TAAATGTTGAAAAACATTATCCTACCCTGT
GTTTGAGAGTTGTGTAAAATTTGATGGTAATAAAAC	GAATTGCTGAGGGAAACTTAATCTCCGATA
GTTTGAGAGTTGTGTAAAATTTGATGGTAATAAAAC	TCTAAGAATAATCTTTCTAACGAATAGTGA
GTTTGAGAGTTGTGTAAAATTTGATGGTAATAAAAC	CTTCATTGCTTGTTATACTAACAACAGC
GTTTGAGAGTTGTGTAAAATTTGATGGTAATAAAAC	TTATTGTAATTGATTAAATCTTCTAAAGT
GTTTGAGAGTTGTGTAAAATTTGATGGTAATAAAAC	AGATATTTTTTTGTTTTTTGTAGATTAATA
GTTTGAGAGTTGTGTAAAATTTGATGGTAATAAAAC

>NZ_CP053841|1|1|70900-71460|CRT
GTTTGAGAGTTGTGTAAAATTTGATGGTAATAAAAC	TTTAGAAGATTTGATTAATTACAATAACGA
GTTTGAGAGTTGTGTAAAATTTGATGGTAATAAAAC	CAAAATGTGAATAAAGATGGCTACTATATA
GTTTGAGAGTTGTGTAAAATTTGATGGTAATAAAAC	TAAATGTTGAAAAACATTATCCTACCCTGT
GTTTGAGAGTTGTGTAAAATTTGATGGTAATAAAAC	GAATTGCTGAGGGAAACTTAATCTCCGATA
GTTTGAGAGTTGTGTAAAATTTGATGGTAATAAAAC	TCTAAGAATAATCTTTCTAACGAATAGTGA
GTTTGAGAGTTGTGTAAAATTTGATGGTAATAAAAC	CTTCATTGCTTGTTATACTAACAACAGC
GTTTGAGAGTTGTGTAAAATTTGATGGTAATAAAAC	TTATTGTAATTGATTAAATCTTCTAAAGT
GTTTGAGAGTTGTGTAAAATTTGATGGTAATAAAAC	AGATATTTTTTTGTTTTTTGTAGATTAATA
GTTTGAGAGTTGTGTAAAATTTGATGGTAATAAAAC

>NZ_CP053841|1|2|71294-71466|PILER-CR
	TTTAGAAGATTTGATTAATTACAATAACGA
GTTTGAGAGTTGTGTAAAATTTGATGGTAATAAAAC	CAAAATGTGAATAAAGATGGCTACTATATA
GTTTGAGAGTTGTGTAAAATTTGATGGTAATAAAAC	TAAATGTTGAAAAACATTATCCTACCCTGT
GTTTGAGAGTTGTGTAAAATTTGATGGTAATAAAAC	GAATTGCTGAGGGAAACTTAATCTCCGATA
GTTTGAGAGTTGTGTAAAATTTGATGGTAATAAAACTCTAAGAATAATCTTTCTAACGAATAGTGAGTTTGAGAGTTGTGTAAAATTTGATGGTAATAAAACCTTCATTGCTTGTTATACTAACAACAGCGTTTGAGAGTTGTGTAAAATTTGATGGTAATAAAACTTATTG	TAATTGATTAAATCTTCTAAAGT
GTTTGAGAGTTGTGTAAAATTTGATGGTAATAAAACAGATAT	TTTTTTGTTTTTTGTAGATTAATAGTTTGA
GAGTTGTGTAAAATTTGATGGTAATAAAACTAATTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053841.1\|WP_106869977.1\|69847_70168_+\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_CP053841.1\|WP_106869365.1\|62997_63960_+\|KpsF/GutQ-family-sugar-phosphate-isomerase	unknown	unknown	gnl\|CDD\|129488
NZ_CP053841.1\|WP_106869342.1\|77054_77957_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|273359
NZ_CP053841.1\|WP_106869344.1\|76251_77058_+\|metal-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224033
NZ_CP053841.1\|WP_106869355.1\|71610_71901_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053841.1\|WP_106869373.1\|58261_59329_-\|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	unknown	unknown	gnl\|CDD\|237719
NZ_CP053841.1\|WP_106869350.1\|73119_74115_+\|zinc-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238500
NZ_CP053841.1\|WP_106869369.1\|60213_61050_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP053841.1\|WP_106869361.1\|64996_68992_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	mkCas0193_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|374653
NZ_CP053841.1\|WP_106869338.1\|79273_79504_-\|replication/maintenance-protein-RepL	unknown	unknown	gnl\|CDD\|253356
NZ_CP053841.1\|WP_106869354.1\|71933_72662_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_CP053841.1\|WP_106869346.1\|75511_76267_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213202
NZ_CP053841.1\|WP_172658222.1\|63970_64732_+\|rRNA-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|224108
NZ_CP053841.1\|WP_106869371.1\|59374_60133_-\|imidazole-glycerol-phosphate-synthase-subunit-HisF	unknown	unknown	gnl\|CDD\|234996
NZ_CP053841.1\|WP_106869340.1\|78087_79284_+\|multidrug-effflux-MFS-transporter	unknown	unknown	gnl\|CDD\|340878
NZ_CP053841.1\|WP_106869359.1\|68988_69858_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
NZ_CP053841.1\|WP_106869357.1\|70164_70812_+\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd09644_csn2_CAS-II-A	gnl\|CDD\|213407
NZ_CP053841.1\|WP_106869348.1\|74111_75515_+\|DUF1007-family-protein	unknown	unknown	gnl\|CDD\|225125
NZ_CP053841.1\|WP_106869352.1\|72645_72999_-\|transcriptional-repressor	unknown	unknown	gnl\|CDD\|223806
NZ_CP053841.1\|WP_106869367.1\|61012_62989_+\|ribonuclease-J	unknown	unknown	gnl\|CDD\|223668

Protein	Function_ID	Function_description	E-value
NZ_CP053841.1\|WP_106869977.1\|69847_70168_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	7.54782e-33
NZ_CP053841.1\|WP_106869354.1\|71933_72662_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.45411e-11
NZ_CP053841.1\|WP_106869342.1\|77054_77957_-\|DMT-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	2.55182e-08
NZ_CP053841.1\|WP_106869344.1\|76251_77058_+\|metal-ABC-transporter-permease	gnl\|CDD\|224033	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism].	2.79396e-63
NZ_CP053841.1\|WP_106869365.1\|62997_63960_+\|KpsF/GutQ-family-sugar-phosphate-isomerase	gnl\|CDD\|129488	TIGR00393, Probable_arabinose_5-phosphate_isomerase, KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli. [Energy metabolism, Sugars].	3.54867e-109
NZ_CP053841.1\|WP_106869373.1\|58261_59329_-\|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN	gnl\|CDD\|237719	PRK14462, PRK14462, 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN.	0
NZ_CP053841.1\|WP_106869350.1\|73119_74115_+\|zinc-ABC-transporter-substrate-binding-protein	gnl\|CDD\|238500	cd01018, ZntC, Metal binding protein ZntC. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and bind their specific ligands in the cleft between these domains. In addition, many of these proteins possess a metal-binding histidine-rich motif (repetitive HDH sequence).	1.66943e-107
NZ_CP053841.1\|WP_106869369.1\|60213_61050_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	9.51145e-84
NZ_CP053841.1\|WP_106869361.1\|64996_68992_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|374653	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9. The REC lobe of Cas9 - the CRISPR-associated endonuclease Cas9 - includes the REC1 and REC2 domains. REC1 forms an elongated, alpha-helical structure consisting of 25 alpha helices and two beta-sheets, whereas REC2 inserted within REC1 adopts a six-helix bundle structure. The REC lobe and the NUC lobe of Cas9 fold to present a positively charged groove at their interface which accommodates the negatively charged sgRNA:target DNA heteroduplex. CRISPR (clustered regularly interspaced short palindromic repeat)-Cas system occurs naturally in bacteria as a defense against invasion by phages or other mobile genetic elements. Cas9 is targeted to specific genomic locations by sgRNAs or single guide RNAs, in order to complex with invading DNA in order to cleave it and render it inactive.	6.26633e-127
NZ_CP053841.1\|WP_106869338.1\|79273_79504_-\|replication/maintenance-protein-RepL	gnl\|CDD\|253356	pfam05732, RepL, Firmicute plasmid replication protein (RepL). This family consists of Firmicute RepL proteins which are involved in plasmid replication.	0.00423499
NZ_CP053841.1\|WP_106869346.1\|75511_76267_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213202	cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.	1.99048e-98
NZ_CP053841.1\|WP_172658222.1\|63970_64732_+\|rRNA-pseudouridine-synthase	gnl\|CDD\|224108	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis].	9.84345e-72
NZ_CP053841.1\|WP_106869371.1\|59374_60133_-\|imidazole-glycerol-phosphate-synthase-subunit-HisF	gnl\|CDD\|234996	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional.	2.81884e-169
NZ_CP053841.1\|WP_106869340.1\|78087_79284_+\|multidrug-effflux-MFS-transporter	gnl\|CDD\|340878	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as MdfA (also called chloramphenicol resistance pump Cmr), EmrD, MdtM, MdtL, bicyclomycin resistance protein (also called sulfonamide resistance protein), and the uncharacterized inner membrane transport protein YdhC. EmrD is a proton-dependent secondary transporter, first identified as an efflux pump for uncouplers of oxidative phosphorylation. It expels a range of drug molecules and amphipathic compounds across the inner membrane of E. coli. Similarly, MdfA is a secondary multidrug transporter that exports a broad spectrum of structurally and electrically dissimilar toxic compounds. These MDR transporters are drug/H+ antiporters (DHA) belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.26221e-87
NZ_CP053841.1\|WP_106869359.1\|68988_69858_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.34164e-98
NZ_CP053841.1\|WP_106869357.1\|70164_70812_+\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213407	cd09644, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	1.06322e-28
NZ_CP053841.1\|WP_106869348.1\|74111_75515_+\|DUF1007-family-protein	gnl\|CDD\|225125	COG2215, COG2215, ABC-type uncharacterized transport system, permease component [General function prediction only].	3.93899e-21
NZ_CP053841.1\|WP_106869352.1\|72645_72999_-\|transcriptional-repressor	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	8.54507e-16
NZ_CP053841.1\|WP_106869367.1\|61012_62989_+\|ribonuclease-J	gnl\|CDD\|223668	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair].	0

>NZ_CP053841.1|WP_106869357.1|70164_70812_+|type-II-A-CRISPR-associated-protein-Csn2
MKIYHEILSKPIQFNENKVQILYIEKPEIYREILKDFNYGSGFIISDDNDNFEYDKTLSFNPDVLDLFKNERKIITQIQKNIIKDCQTKFYENSLSLVNKLNDFSNMILSSYDSIFRADISIENLVKILNIQIIQSDTLLENIVDFMNIEREVLDIKIFVFVNLKSIFSNNELLELYREIILRKFNVLLLESNYKIKLENEEIVIIDEDLCEVRC
>NZ_CP053841.1|WP_106869977.1|69847_70168_+|CRISPR-associated-endonuclease-Cas2
MSFRYMRVIVFFDLPTKTSKDIKNYSKFHKFLLKNGFMMLQNSVYSKIVLNQTSANLLSSRVRANSPEKGNIILLSITEKQFNKMEYIIGEQKDSVVSSSDRVVLL
>NZ_CP053841.1|WP_106869359.1|68988_69858_+|type-II-CRISPR-associated-endonuclease-Cas1
MSWRTVCINGIAKLDLKFGYLVVRKENISKIALNEIAVLVIDSTAISLTTALLNELIKRKVKVIFCDSFHNPFSELAPMYGSHDSSLKIKKQMLWKDEMKAQIWTRIIKEKIYKQMYNLIIFDYKKEAKLLEKYISEIKLNDETNREGHAAKVYFNALFGMKFTRDSDNSINAALNYGYSLLLSTFNKEISSNGYITQIGLFHDNRFNYFNLSCDLMEIFRPIVDKMVYELQPKVFEKEEKICMLELFNKKVMIENKEQFLMSAINVYVKSVLDSLNENNMLLEIYDEF
>NZ_CP053841.1|WP_106869361.1|64996_68992_+|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MLDKKSYYLGLDIGTNSIGWAVSDEFYNILKIKGQKTWGVRLFDDAMPAAERRGFRSSRRRGDRVKWRLGLLRNLFSSEIDEVDNKFFKRLEDSKFFADDKGENQTNTLFNDIKFKDRDFHKKYNSIYHLRYDLITKDEKFDLRLVYLAIHHIVKKRGHFLFDGEIGDNKNNFSELTQNLIDELLALDINVDFLDNFQEVLKDESLRLGDKKAKLKEIITVSSEKFDEKKVLTQIVNLLCGKGNLKIFFPESEEKKIEISLLSDSFDENFDNLLAKFGEDANFIKPLKDIFDYILLQKIMKDSSTISESKIKSYKKHKKDLKKLKDLILNEYGKDKFNEVFKSSTKDNYPAYVGHFKTKKLKDEHKKTTKDDFYAYIKKIINKSDSQIVKTIKDDIELGNFLPRLIDGNSVIPHQIHKSELIKIIDNQTKFYPFLKDIKDKIISIFEFRIPFYVGPLNDYHKDKGGNAWIVKNSNEKIYPWNFDKVVNIKQSAQNFITKMTNKCSYLLGEDVLPKNSLLFSKYCVLNELNNLKVNDEDISVELKKELYENLFKKQKSVSKSSIKKHLINNGYYDKNLIIEGVDDKLTSNLKSYIELKEIVGNSLSDEEKEEIIKYIALFGYDKKMLKSYILDISPSLDEKTLDRLCTLKYSGFGSLSKKLLVGIKSNDKTLIQILEDTNKNLMQLVSDEFKNEIEKHNNEYKKQNNLLDVGLSYGLLDNLYVGPSVKRGIWQSLRLIDEIISAFKYPPKKIFIEMAREEGRKERTKSRKDQLLELYKSIKKDGVKEFGIEFDKVKTNLEKEEQSRLNSKKLYLYYMQFGKDIYAGNNIDISKLFDENIYDIDHIIPRSIKKDDSFDNLVLTNKISNKDKTDVFPVSFEVQNKMRSFWKMLKDKGLMSSKKLHSLTRTTPLSEDEKAEFIARQLVETRQSTKAVATLLKDLYKNSEIVYVKAGIVSEFRQKFDLIKCRDLNDLHHAKDAYLNIAVGNAYNVKFTKNPRNFFKKYKGEHYNLKIEKLLERDIIRGQEFGWDAKKSIKIVKDTMINKNPYLVTYMSYEANGGLFNQQPVKAKEGLIPLKADPRLKNTSRYGGYNGKSMAYFFIFEYKKGKNRQLRIDTIPIYLKKDIENGKLTLKEYCQNNLGFEDVVIKLPKLLKNSLIKVDGYLMKMTGNNEDKILCRNAVQLILNSKEELLLKKVLKIVDKINEAKRFKKEYFINKYQFDIEDKELLELYDRLTKKHETAYKNKPASQIETLKDGREKFISLSLEDKCLLLSELLKLFDTTAQNANLSLIGGSPNAGSVKFVKNLSDNKTYKIIFESISGFYKKEIDLNKL
>NZ_CP053841.1|WP_172658222.1|63970_64732_+|rRNA-pseudouridine-synthase
MRINKFISHNTGYSRREADELIKDGKVSVNGKVITDFCEVTHEDKVRINGRFIKLKKEFSVIVYHKQKGELVTKKDDRGRKTIYDSLPNGFRKFVSIGRLDFASEGLLLLTDAPAIATALMQSDIERVYYLKVKGLVGDEVVKAMQEGFFAADATKGAHEKTTIKSMEFKPFLVYSVLGSSGGYTKLKVMISEGQNRELRRFFGYFDLEVVDLKRVSFGRVDLGMLKPGKWRYLTNSEYDDLRNFMETNNVRY
>NZ_CP053841.1|WP_106869365.1|62997_63960_+|KpsF/GutQ-family-sugar-phosphate-isomerase
MSEILNVAKEVLKIEGEEILRQIDLLDDRFENALNILFNSTGRVVVTGVGKSGHIGAKMAATFASTGTPSFFMHPTEALHGDLGMVKKEDIILAISFSGESDELIKIMPHLKRYGVKIISMTSSSESSLAKFSDEVILLNIIKEACHIGAAPTTSTTLTLALGDALAVCLMKMKNFKVEDFANFHPGGSLGRRLYLKAKDVMRTSDLPILNDDTTLKNAIDVMTHGKLGTVLLTNKKGELVAILSDGDLRRALMNDGFDIEDSAIKYATKNPKTINNIEILASKALEIIESYKIQLIAVVDKKNIPIGTLHIHDLTNLGL
>NZ_CP053841.1|WP_106869367.1|61012_62989_+|ribonuclease-J
MEEKIQKKQESVKKIGDNIGGKEEPHRRARRKQNLQKEATANNPANTKNQKNKSASNGKSGNKRKRSNVLKTLVGNEPWQKAIEKSIVDNKLVHERRLHPLSLQKANNEKIKVTPLGGLGEIGGNMTVFETENSAIIVDVGMSFPNESMLGVDILIPDFDYIRKIKDKIDGIIITHAHEDHIGAMPYFFKEFKYPIYATPLPLGMISNKFEEHGLKAERSFFRPIEKRKIYKIGDFEVEWIHITHSIIDASSLAITTKAGTIIHTGDFKIDHSPIDGYPSDLGRFAYYGEKGVLLLMSDSTNSHREGITKSESSVGKTFDNIFSHAKGRVIMSTFSSNIHRVYQAVDHGLKHGRKVCVIGRSMERNLYTAMELGYIDLKKEIFIDANEVGKYPDNKVLIVTTGSQGETMSALYRMATDEHKYIKIKPTDQIIISAKAIPGNEASVSKVLNFLLKSGAKVAYQDFSEIHVSGHAAQEEQKLMLSLTKPKFFLPIHGEYNHIAKHKETAISCGIDERNIYLMSDGDQMEVSNSYLKRVKTVRTGKVYIDNQVNKQIADDIVKHRQNLADAGVVMIIAQIDSNDKHLIKTRVVSYGIVAQNEQQTLTKEMEAILMQFLANLKTELLKDPRALESQIRQAVRKHIFRRLKKYPTIVPVIYLM
>NZ_CP053841.1|WP_106869369.1|60213_61050_+|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MIKAKKQFGQNFLKDKHILEKIIQAIPNDVDSVVEIGAGLGDLTKELLKISKVKSYEIDVELYSILKDKFYTEIQDNRLELELGDVLEVWQRKNLSDKKYFLVANLPYYIATRIILNAIDDYMCSGLIVMIQKEVAEKFSAVSSKKEFSPLTILANLQGSCELLFDVPPECFEPSPKVNSSVIRLIKTKRLEILFKTELEYSEFQSFLKTAFMQPRKTLLKNLSSKFDKSSIMEFLSENSLETNIRAHQLNTALFINIFKFLKAKNDGRENSKETRVC
>NZ_CP053841.1|WP_106869371.1|59374_60133_-|imidazole-glycerol-phosphate-synthase-subunit-HisF
METFTRRIIPCLDVNNGRVVKGINFVNLIDAGDPVEVAKRYNEEGADELCFLDITATHEKRKTIVNMVERVAKELFIPLTVGGGIKTIDDISALLDVGCDKISVNSSAVQNPNLIDEAAKKFGSQCIVVAIDIKKIGDNYDVFVSGGRTNTNKKALVWAKEVESRGCGEILLTSMDKDGTKSGYDLEITNKLSTNLNIPVIASGGAGSMEDMKDAFLYGADAVLAASVFHFGEIKINELKKYLLENGINVRL
>NZ_CP053841.1|WP_106869373.1|58261_59329_-|23S-rRNA-(adenine(2503)-C(2))-methyltransferase-RlmN
MQNLLDYTKKELEEFIKPNFRAKQIYEWVYKKNAKSFDDMLNLPKTLREDLNEKFYIDPLKKIKSEKSSDGSIKYLFELKDGKTIETVWLPMKDEIYDEDGNLLRHSRYTVCVSSQVGCKIGCTFCLTAKGGFVRNLTPGEIVAQVHYAKKDNNIPYERRVNIVYMGMGEPLNNLENVKKAIEIFTDNDGLAIAPRRQTISTSGLSSQIKKLGEMDLGVLLAISLHAVNDELREKLMPINRAYNIASIMDAVRNFPIDMRKKVMFEYLMMDNLNDSIKDAKTLVKLLHGIKAKVNLIYFNPHEGSEYKRPSMENMENFQSYLRDHGITCTIRESKGLDISAACGQLKERAKISDR
>NZ_CP053841.1|WP_106869355.1|71610_71901_+|hypothetical-protein
MQKLFFGLGLAFVLGISLNAQNNARKMGECMVVSDEKEMTPCEVVDQRRSSKAHMHKDEEKHKNALTRNSKINDFFNNNHQDMKKETNETVKIDMH
>NZ_CP053841.1|WP_106869354.1|71933_72662_-|class-I-SAM-dependent-methyltransferase
MNVTNNKWDKKSKTYNKFSGNLNDFQKKFFKVLDEFGVDFKGKTMIDIGCGTGAYTLYLARLCKNILGIDSSIKMLEELEKSAKEFNITNVKTKNFSFDEFESSDKFDIAFLTMSPALQTKEHFQKFIDLGELKIYLNWYKPRHSTLLEPFFKKYGKNSLTNRTSMLKSYLEISKIPYKSEILTEMRIQNRSYEEAVENVLWHLDINNLNFNEDEVKDEIKAMLEGGFIKDTINSKMQLLVF
>NZ_CP053841.1|WP_106869352.1|72645_72999_-|transcriptional-repressor
MDIKKFLNEHGITPTSLREEIINILSNIEKPISCDELVEQTSANKTTIYRNLTLFEEKNILISSETNRKHFYELAKEAKAYFVCDKCHKMEEITMPNLDKKHVKSVVIKGICDECYK
>NZ_CP053841.1|WP_106869350.1|73119_74115_+|zinc-ABC-transporter-substrate-binding-protein
MRILLTLLFGVISLFAKGDVVVSILPQKYFVEKIAGDTVKIDVMVLPGASPASYEPKSSQMKHLENADIYFSIGVPFEKVWLKKFKSQIPSLNIVATDEGVVKRSMHHHDHDEHHEHHEHGEAEHEHHEDHEHATHNEHEIEEEVGCDPKKDSDCYCHEHENGEMFCHTHRGLDPHIWLDPRLVIVQAQNIEKALIKAYPENEELYKARTSSFIKELNALHNDIKDRLKDLKGRKFMVFHPSWGYFAKRYGFEQIPVEKEGKEPKPAELQKLIKLAKEENIKVIFVAPQFSKKSANIIAKESGIKVVELDPLPQDWMKGMEKVVKSFENNI
>NZ_CP053841.1|WP_106869348.1|74111_75515_+|DUF1007-family-protein
MIKRILIFLVSVFFTTQASACALCALMTPTAHIYLDFNTTQEELNSIKVSWHFSKNFTDLTLEGYDLNGNLKLDEDELAEVNFAMVDYLQRKNYLMKYEYYDMPDGKTHELEGEIIDSKSSLVDGRYVFEFIKKVKLPIKDNRILKIVANDDEGYFNFSFLNSGKSMILDNLYAIYNSNLNATFIEFKKGNISTQKQKSLKSLIKNSNIDSEKVSKNFIDEYGLKTLKKLKSLFANSAEFSFLTIFSIISISFLYGFFHAAGPGHAKMLTTSYFLANGGNYLKSFIFSLKIGIFHVIGAFLLVVVSMFGVDLVASSVSSNNISLTTKVSAIIIILVSLFLFADKIKEIKGNTHQTGCKCSSCCGHKKSENEWFIALSAAIIPCPGTILVFVVAFNIGSYFLSFISAIFMALGMSVVIFLAAVIGFKANKIGTSKFKNLKIYIEFFGIFLMLILGVFMFLIADKIGIL
>NZ_CP053841.1|WP_106869346.1|75511_76267_+|ABC-transporter-ATP-binding-protein
MSEIVVKDLSFGYDENLVLEDINLEYNKNDFLTIIGPNGGGKSTFLKIMLGLITPKQGSIEIYGKKPQDVSSILGYVPQFIPINENFPISVLDVVLMGKIDKKKFGFYTKECKEDALEALKLVGMEACAKRRISELSGGQRQRVYIARALCSDAKILLLDEPTASIDTQGQIEIYDLLKEINKNGKGIIVISHDVNISINYATKVGHINKKLVMHEIDIEKKDNFFNHLREEHTHICDVELILRECSCKNY
>NZ_CP053841.1|WP_106869344.1|76251_77058_+|metal-ABC-transporter-permease
MQELLSLTFMQNAFLGGILVSIACGIVGSLVVINRMTFIAGGISHAAYGGIGLAFYFGIAPLLGATVFSIFLALLVAFITLKDKERFDSIVGAIWAFGMAFGIILIDLTPGYNVDLMSYLFGSILAIDKNTLYFVSMVDIIFIIMMCVFYRQFCAISFDSEFARLKGVNSTLFYYVLVAMMALCVVGTIQVVGLILVISLMTIPPYIAEIFSKRLGEMMVYSAIISSIFCIVGLLLSYKFDITSGASIIMVASIFFFMVVIFKRLKSL
>NZ_CP053841.1|WP_106869342.1|77054_77957_-|DMT-family-transporter
MSKSLMSEIALIFVAISWGATFLPVQSAIESINVFSFLFFRFLVSTILMYLISLKFGIKFTKNSILYGALLGLFLFGGFSFQTYALKYTLSSTVAFITGLYVILVPFIMFVFFKQHVKLTTIFGGIVALVGLYFLSGANSFDLNLGELLTIICAVSYALHISFTGVYVHKSNIYALVTTQFGTTALLSLIFAIFFSNNNLNTMAILGGFEIWLNIELLYAIILTAVIATVFAFFVQTLAQQYTTAAKTVLIFTLEPVSAGVIGYLWANEILSKPQIFGAILILLGILICEVAPLLIKRKN
>NZ_CP053841.1|WP_106869340.1|78087_79284_+|multidrug-effflux-MFS-transporter
MKTINTTYKFDKIKLVLVLAFMSAIAPLSIDMYLPALTQIREIFETDEFYMQLSLAVFFIAFSFGQLIYGPLSDIYGRKKPLYFGITIFVISSFACAMVDSVYAFIFFRFTQALGGSAGIVIARAVINDKFELNEAASMFAIMMVVASLAPMLAPTFGSLILHFVSWRIIFIMLFSLGVMLLFMIYFWLKDSSRVGKKDELSFKKMAITYIEILKNRKFIVYALSLAMPMSAMFAYITGSSFVFVEYFGLSTYKYGIIFGLNALGVTLVSAINSKLVLKHSPENFLKIGLFLASFFVIILIALGYFKVEFLYFEIMLFLTLATLGFIIPNATSLAMSCYKERSAGAASAVLGAMQFAFAGGASFSVGFLKANNPLFLSIVMGSSTFIALLIYIKGFKE
>NZ_CP053841.1|WP_106869338.1|79273_79504_-|replication/maintenance-protein-RepL
MISSLEIYKKILGDKKVDIIEFLVLKCDKRGFITLTIDEISKELDTSKPTIIATFNLLRSKGTLKRIKNGVYKITL

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Crispr_ID: NZ_CP053841_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053841_2

814448-814528

Orphan

Consensus_repeat	Method
AAATGTAAAGAAGATGAAATTTAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP053841_2

>merge|NZ_CP053841|2|814448-814528|CRISPRCasFinder
AAATGTAAAGAAGATGAAATTTATGATTCTGAAACTGATAAGTGCATTAAAAAAGATAAATGTAAAGAAGATGAAATATAT

>NZ_CP053841|2|2|814448-814528|CRISPRCasFinder
AAATGTAAAGAAGATGAAATTTAT	GATTCTGAAACTGATAAGTGCATTAAAAAAGAT
AAATGTAAAGAAGATGAAATATAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053841.1\|WP_106870483.1\|813049_813244_+\|phosphonate-transporter	unknown	unknown	unknown
NZ_CP053841.1\|WP_106870489.1\|816189_816630_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053841.1\|WP_106870499.1\|821179_821464_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053841.1\|WP_106870473.1\|809971_810241_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053841.1\|WP_162296615.1\|824296_826804_-\|AsmA-like-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|372480
NZ_CP053841.1\|WP_106870479.1\|811003_811276_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053841.1\|WP_106870507.1\|826823_827774_+\|endolytic-transglycosylase-MltG	unknown	unknown	gnl\|CDD\|224475
NZ_CP053841.1\|WP_133169608.1\|813288_813615_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053841.1\|WP_106870493.1\|817742_818984_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|333965
NZ_CP053841.1\|WP_106870477.1\|810734_811007_+\|type-II-toxin-antitoxin-system-YafQ-family-toxin	unknown	unknown	gnl\|CDD\|379750
NZ_CP053841.1\|WP_106870629.1\|811293_811734_-\|restriction-endonuclease	unknown	unknown	gnl\|CDD\|377369
NZ_CP053841.1\|WP_106870481.1\|812611_812926_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053841.1\|WP_106870497.1\|820303_821176_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271177
NZ_CP053841.1\|WP_106870475.1\|810505_810733_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053841.1\|WP_106870503.1\|823175_824237_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|376070
NZ_CP053841.1\|WP_106870631.1\|812061_812310_-\|cobalt-chelatase	unknown	unknown	unknown
NZ_CP053841.1\|WP_106870491.1\|816634_817780_+\|zonular-occludens-toxin	unknown	unknown	gnl\|CDD\|283385
NZ_CP053841.1\|WP_106870471.1\|808612_809635_+\|undecaprenyldiphospho-muramoylpentapeptide-beta-N-acetylglucosaminyltransferase	unknown	unknown	gnl\|CDD\|234825
NZ_CP053841.1\|WP_106870495.1\|819030_820302_+\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|336220
NZ_CP053841.1\|WP_106870501.1\|821766_823098_-\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|183427

Protein	Function_ID	Function_description	E-value
NZ_CP053841.1\|WP_106870629.1\|811293_811734_-\|restriction-endonuclease	gnl\|CDD\|377369	pfam04471, Mrr_cat, Restriction endonuclease. Prokaryotic family found in type II restriction enzymes containing the hallmark (D/E)-(D/E)XK active site. Presence of catalytic residues implicates this region in the enzymatic cleavage of DNA.	0.000482371
NZ_CP053841.1\|WP_106870497.1\|820303_821176_+\|site-specific-integrase	gnl\|CDD\|271177	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain. Rci protein is a tyrosine recombinase specifically involved in Shufflon type of DNA rearrangement in bacteria. The shufflon of plasmid R64 consists of four invertible DNA segments which are separated and flanked by seven 19-bp repeat sequences. RCI recombinase facilitates the site-specific recombination between any inverted repeats results in an inversion of the DNA segment(s) either independently or in groups. HP1 integrase promotes site-specific recombination of the HP1 genome into that of Haemophilus influenza. Bacteriophage Hp1_like integrases are tyrosine based site specific recombinases. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	5.13727e-23
NZ_CP053841.1\|WP_162296615.1\|824296_826804_-\|AsmA-like-C-terminal-domain-containing-protein	gnl\|CDD\|372480	pfam13109, AsmA_1, AsmA-like C-terminal region. This family is similar to the C-terminal of the AsmA protein of E. coli.	3.07436e-53
NZ_CP053841.1\|WP_106870507.1\|826823_827774_+\|endolytic-transglycosylase-MltG	gnl\|CDD\|224475	COG1559, COG1559, Aminodeoxychorismate lyase [Coenzyme transport and metabolism].	6.11112e-69
NZ_CP053841.1\|WP_106870493.1\|817742_818984_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|333965	pfam00263, Secretin, Bacterial type II and III secretion system protein.	5.31388e-17
NZ_CP053841.1\|WP_106870471.1\|808612_809635_+\|undecaprenyldiphospho-muramoylpentapeptide-beta-N-acetylglucosaminyltransferase	gnl\|CDD\|234825	PRK00726, murG, undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional.	1.35932e-119
NZ_CP053841.1\|WP_106870501.1\|821766_823098_-\|hydroxylamine-reductase	gnl\|CDD\|183427	PRK12310, PRK12310, hydroxylamine reductase; Provisional.	0
NZ_CP053841.1\|WP_106870491.1\|816634_817780_+\|zonular-occludens-toxin	gnl\|CDD\|283385	pfam05707, Zot, Zonular occludens toxin (Zot). This family consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophages present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.	1.72588e-16
NZ_CP053841.1\|WP_106870503.1\|823175_824237_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|376070	pfam18644, Phage_int_SAM_6, Phage integrase SAM-like domain. Xer recombinases are members of the tyrosine site-specific recombinase superfamily, a large group of enzymes that catalyze DNA breakage and rejoining using a conserved tyrosine nucleophile. Tyrosine recombinases promote various programmed DNA rearrangements including the monomerization of phage, plasmid and chromosome multimers, resolution of hairpin telomeres, and the movement of virulence and antibiotic resistance carrying integrative mobile genetic elements. Structural analysis of Helicobacter pylori XerH indicates that this N-terminal domain consisting of six alpha-helices contacts the DNA using a four-helix bundle.	4.4703e-69
NZ_CP053841.1\|WP_106870495.1\|819030_820302_+\|radical-SAM-protein	gnl\|CDD\|336220	pfam05840, Phage_GPA, Bacteriophage replication gene A protein (GPA). This family consists of a group of bacteriophage replication gene A protein (GPA) like sequences from both viruses and bacteria. The members of this family are likely to be endonucleases.	2.11859e-07
NZ_CP053841.1\|WP_106870477.1\|810734_811007_+\|type-II-toxin-antitoxin-system-YafQ-family-toxin	gnl\|CDD\|379750	pfam15738, YafQ_toxin, Bacterial toxin of type II toxin-antitoxin system, YafQ. YafQ is a family of bacterial toxin ribonucleases of type II toxin-antitoxin systems. The E.coli gene is expressed from the dinB operon. The cognate antitoxin for the E. coli protein is DinJ, in family RelB_antitoxin, pfam02604.	9.12848e-30

>NZ_CP053841.1|WP_133169608.1|813288_813615_+|hypothetical-protein
MLQNAIYVPQFRECFKEILIKDKKFYLVDFNNNPKFILINVDFKDGFLYDKKSSKCYLSSNGSVFDNSVGKLNEFGIYDYQFNFLMGLTAILICFSFLIGLIIVGATR
>NZ_CP053841.1|WP_106870483.1|813049_813244_+|phosphonate-transporter
MKKLLSTIFVSSMVGLTSLIAADAPVIPSDPLKADYAIFDYVFAGVIGVAFIFMVARRVKGFIR
>NZ_CP053841.1|WP_106870481.1|812611_812926_+|hypothetical-protein
MYTYLIGLVDEVRPISRTDKKTGEVLNSIDVTITFEGHDTKGYLIKNTETVNFDFFLRAKFDEVKGKYIGIPYRFLNTRTGAYMFPDDSMDFQVFENNPFVKKK
>NZ_CP053841.1|WP_106870631.1|812061_812310_-|cobalt-chelatase
MTKKEIADYLELEVRTLYNWEKSRPKLYNFIIENISNINENNSKTDKKENKIIELLEKLNEKEKEYYIFDIKARVLKKELEG
>NZ_CP053841.1|WP_106870629.1|811293_811734_-|restriction-endonuclease
MNDYLRNKGEVSSRIKPKNKYDWKKAKGNKYEFYIAQFYKNEGYKVYMKGYNEGYQDEGIDLIAYKGKKEMILIQCKNWESGATLSSIKKFVYDCRNYEMKNYKMIRNKQIKKIYCISNEIEIQEINNYIASIKNEIEFLNIPLLK
>NZ_CP053841.1|WP_106870479.1|811003_811276_-|hypothetical-protein
MKENKIIIIIITIAIAICALALSYIAYDKYQTNKALENLGKEMNKEMIKYNKEKEEYEKQLNREMKKFNRQLNQEMEKMNKELNEMFKKY
>NZ_CP053841.1|WP_106870477.1|810734_811007_+|type-II-toxin-antitoxin-system-YafQ-family-toxin
MYKYSIVYSSKFKKSFKKLSNKDQLLVIDILKKLSKDEKLEEKHKDHQLKGKLKDFRDCHIKPDLVLIYQKNNEILELLVLNIGSHSDLF
>NZ_CP053841.1|WP_106870475.1|810505_810733_+|hypothetical-protein
MNVTIKNVDDKFLNILKELTSIFPKSSLEIENSKAYNDKAIKDILESKEEIEKNRKNGSLKLYNDFDLLLKDLRA
>NZ_CP053841.1|WP_106870473.1|809971_810241_-|hypothetical-protein
MKIALILFFIAFIIKLIEPKKKPRYRAKRKKENTNFKKYDDVRYKQVYDGIKRRYDERLKEYLKNQSEVSSKIKQKNNMTGKKLKAINM
>NZ_CP053841.1|WP_106870471.1|808612_809635_+|undecaprenyldiphospho-muramoylpentapeptide-beta-N-acetylglucosaminyltransferase
MIAITGGGTGGHLVIAKTIATELKNRGIKAIFIGSTYGQDREWFENCDFFEEKYFLKSTGVVNKKGLSKIKSLFNIVKLSFKCKQIFKKHNIKAVFSVGGYSSSPASFWAVFSKTPLFIHEQNAKIGRLNKLLKPFAKNFYNSYEKTKFNYPVKSEVFEKARRRDGLKTIIFLGGSQGARFINNLAMNIAFELKEKNINIIHQCGKLNYNKVSEFYKNNGIHIDLFDFSNELASKMQEADLCIGRSGASTLWELCANLLPAIFIPLPSAANDHQFYNAKFLMDLGLAKVYREDEISKEKILNEIFNYDIIETSRGLESVIEQNGSRQVVDDMLNLLDNCK
>NZ_CP053841.1|WP_106870489.1|816189_816630_+|hypothetical-protein
MKWLIGSAGGFMLTFLGYLTKKIGVRFVVASFVIPLTLIFTAGLVYLFGKLLSYFLKIYNLIKELFPKLFDYTSAGGSFGGVENSTITSSAMEFLHQSGLATALLNSMDLFITILVLFFTIKIYNILVWFYKTINDIIVTLLTLVK
>NZ_CP053841.1|WP_106870491.1|816634_817780_+|zonular-occludens-toxin
MLSLIIGPPGSGKTYKVVNDIYEQYQLHLKDESKYKCIYTNINGFDFDKFNGYVKKFDRFDLLSNAEKEYSLNKQHESGFLGDIGDYDEYAKNQGIYKDYIDSLIVIDEAYNIFNKNFNDNLGRFLSYHRHFNIDIVFMLQSKRQTNREYIIHSELLYVAQPSSKRLFKSVFRYKKYSTYEEKKDNLITTQNLRFKKDIAKLYQSGSDKIYKSYATGKIFFLLFLILFFYLFYNFLKPKQNNTNQQNTEIKAVSSDIKEIDLNVDNKHPIYEDSIDNNKSIIYLYGDNSYFKVTCFPNSCKFSNYTLDLQSETFVELISVSDCQIIVSDKKAVNYIDYYLTCPKEFEEFLIKINNTNNANNTNTIQRVDNEKGNMFNRFNK
>NZ_CP053841.1|WP_106870493.1|817742_818984_+|ABC-transporter-ATP-binding-protein
MKKVICLIVLISSLCYSLEYRSIKFNDFLGEISGITGKNIVISGNIDTNFDVFLPTFDLTKVEVITDLLNDILKVNKLSYSVQNNVILIYQATDSQDYILNDYIIKFKNISKDDVISALNLFTENIKYSVYSDRVLLITTQEQYETIKSLINGLDTSYQFRQLSFTIVSTDNNKLKEIGPNIQAILNPLDSFYFKIITNTLTVDSSKINKSSVTTLINLLKENGVSELLYNPRVTLIDSKDSVIESVVKTPIQKSKVEVQNNQTVTTNDIEYQDVGLRLYITNVLITNDSVSFALDLYIENLLDNTNTPRISSRHLKTNVYLTLADSFLIGGINSKETITNIKTIPFIEKIPILGDLTSYEDKQVNDYSFSIFITMLANASEIVFPRYLDNSGNVIVRTGTLAGSKGDPRSGE
>NZ_CP053841.1|WP_106870495.1|819030_820302_+|radical-SAM-protein
MYGITIIDREILKDKLNNQKNYLDNNFLNVGGSSLPYSAFYFSSWHNPARYISELNNRVFSMSKYAKENDLKPIFAVFTLPSEYHRKKTITIKGVKKLVRNDKFIDDENHSVKAGSDKLQSVVRSIMNSTVFREIPKDKRCYITTKEPHKDGTCHLNFLCFVPKEYVERCVTAIKYRFLDNHSRVEININNATAYIMKYIFKTLDDLRDNPSLENLTDITYWYLKHKIRRVTMSKTFISLEIYRKLNGRIDLITLTKNYNKGLVTVLIDENNKPVKIFDEFGDLWNKTRFNVVINSSQNRYSRELYKQAFKQASKDGKFLSKQEKRFKYISENLEKENYIKHLSYSKRSIPSLTDYELLQYYQDFKKCYIMIEENPQRFSYLENELNKRGFGGLTTNKEIIKIDSIDSLLNDYSNAELLPLRF
>NZ_CP053841.1|WP_106870497.1|820303_821176_+|site-specific-integrase
MILNELFKSYLEYNELLLSKSTIRSNIYTYNKHLRPLFGKIEVNKITFLDIQKFCNNLLKQNYKVKTVKNILVILRVCFNFAIKLDLINKNACDLVELPKFDNKRYFDYSLQIQKRIIKAIIENTNYNADIYFFLLHGRRKNEVLSLKWEDINLKTKTYIIPFTINKAKRNMTYTMSNELYKRLYKRYIEAKKNNQLNNYVFINPVTNTKFTDLRRSWNSLLKRNNLPKIRLHDIRHLVATYSINHLKLPIEQVSFTLGHTDIKTTQRYITNDVKQSKKTIEILINSIKD
>NZ_CP053841.1|WP_106870499.1|821179_821464_+|hypothetical-protein
MKELSQNEKEELLEDLKRTLFLLAEEGDPIVNLTIDEERTYSLENQAKHIKFRLNMTDEDYENLYFEIQEEYDKRHQDYFDWVGSKQQKNQNSK
>NZ_CP053841.1|WP_106870501.1|821766_823098_-|hydroxylamine-reductase
MSKDILEMFCHQCEMSTPGGCGSKGQSVGTCGKDSTLANLQDMMVFGLKGMSAYRHHANELGADTKFVDDTIADTLYFTLTNSNFNFDEHIKQILEVGKAGVDVMGKLSNAHTNAFGIPSPVKVTQNKASGKAILVSGHNLFALKELLEQTKDKGINIYTHSEMLPAHGYPELRKYPHLKGNIGKAWFDQAKLFNEFKGGILMTTNCIVPLKKNCEYQDRLFGYSIAGTNGITRIENDDFTPLIEKTLSLPEVTGFNSDEYLTTGGHYKAVLPMAGEILQALNDGKIKRFFVIAGCDAPGKNRDYYRELALAVPKDCIILTSSCGKFRFNDVDFGNIEGTNIPRYIDLGQCNDSNGAVEIAMALSNATGIAVNDLPVSIVLMWMEQKAVIILMALLYLGIKNIHIGPTLPEFINEEILDFLVKNFNLSLISGNAKADLDKFLK
>NZ_CP053841.1|WP_106870503.1|823175_824237_-|tyrosine-type-recombinase/integrase
MKYGLDYKDSVEKSLLFWLSRYIKYKLTSLSNKELKDPKALASANFGLTKGVVNIDELDGLVKKARNAGITGINTYFNPLKKIYETICFYELQSLKQIDEEFISEVLASVTGGLSDATKKNYRIAVINFFDYLDKQNEENGKSHNYGITLKKWGGISGNSGQKLPEYMSEEELKNFLNAIENSDFKSNTNRNKLIIKTIIYTGIRVGEAINLKKKDISEDEDLYVIRIRGKGNKYRIVMIKKYLIQKHIDNIEINYENKDGYLFINRKGKPLTQAYVSRIVEQILFKAGIRKAKNGAHMLRHTFATMLYKKQKDLVLVQEALGHASLNTSRIYTHFDNEKLKIAANIAEDFQN
>NZ_CP053841.1|WP_162296615.1|824296_826804_-|AsmA-like-C-terminal-domain-containing-protein
MFYIWLKQGININNLNIYDCSIGQLYIKFDNKFIVHAKNINFPEILSDGDSTQAYKSTKKLKEYAKYFQYINKFFKNIELRNVQLGDEKIEILYKDNIFFVDTSLLTVDTQIIAKTDSFYMQIKKIELKDFDLTVQGDTRVDFNSNEYLFDGVFKTHEIDGHLYAEIANGILKYTVEDASANSLGQFTKELGIKTSIHPIVQEWLYGKTIASKYYLEYFSGEIDLENLDYRLDKLNGQAFAYDLSVEFNEKLPPVTASRTFIELKDEMLFFTLQNPKYQDKDISGSSVLIDKIFKDDPKVIVDLRIKSTLDKTILDLIKTYDIELPIIQKSGETQGKLTLNIDINSLDVDIKGDFKIKDAIISLQGTNFYTSNTNIDLSNSKVVIKDSNLELESIFKAVNLNGQIDVNTKKANFDATIDSLTINSTKNEIFKRDNFQTSVDLDFSKSDVVIKIPNLDTEMIFGNQYKINIENVANLYPYSKLLQEFSANSGSIYITTNDFVNFNINTKNLKFKTPLIKKDGTVYTQDDFSINIKNNIIEGKSKSGYLAFNMDGKNTNINISNLDLPLEFNNSSKTQTPSSKINFHGDNSFLILKDINKSIDFNTFNGNIDGEYIYFLGHVGQNGKLSLKTAPGLLYMHGENITGNSINKFLNYNSFNGGTFSLKAIGKNPFNFKAEIGIKDTHLKDYVFYHQLLSFLNSVPSLLTFKTPDFNDKGFSVKDGKIYLSRKENIVEIEAMELIGTTADMGGKGYVNLDTKEINVDLEIKYLKDASSIIKNIPIVNQIILGKNRTISTVIEVRGTLDKPKYSSKVVSDILTTPFSIIKNTLELPFVIFE
>NZ_CP053841.1|WP_106870507.1|826823_827774_+|endolytic-transglycosylase-MltG
MVNIIRIFCIILDIIFIFILAIADNVTMPVNFKNTIYIPKGSSTKIIAELSKQNFNGTIFDAKLLSLVGMPQHGYIDIGDNSLNKIDFLYKLTIAKPQMIEITLIPGKTTIITFEDISKKYNFDIGKLEDEYIKQTPFYEGFLIPETYLVAKGFNEKELIEILIKESKKSHKKLSKEYFGDYNETKWIEVLTKASIIQKEAANIKEMSIVSSVIDNRLSLGMPLQMDGSLNYGKYSNIKITSDRIKNDTSRYNTYIHKGLPPAPVCLISIDAIKAALNPDKTKYLYFMRDKKTGEHVFTKTYKEHINQINIQRKIK

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Crispr_ID: NZ_CP053841_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053841_3

901160-901260

Orphan

Consensus_repeat	Method
CTTTTCGTTCATTTGGGATAAATTGTTTCACTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP053841_3

>merge|NZ_CP053841|3|901160-901260|CRISPRCasFinder
CTTTTCGTTCATTTGGGATAAATTGTTTCACTCTAAGTTTATAACAAGAAAGGGTAAGAGGTGGTGAGCTTTTCGTTCATTTGGGATAAATTGTTTCACTC

>NZ_CP053841|3|3|901160-901260|CRISPRCasFinder
CTTTTCGTTCATTTGGGATAAATTGTTTCACTC	TAAGTTTATAACAAGAAAGGGTAAGAGGTGGTGAG
CTTTTCGTTCATTTGGGATAAATTGTTTCACTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053841.1\|WP_106872578.1\|899301_900435_+\|phage-tail-sheath-subtilisin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|164955
NZ_CP053841.1\|WP_106872575.1\|898020_899196_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|240612
NZ_CP053841.1\|WP_157940037.1\|896254_898018_+\|SPASM-domain-containing-protein	unknown	unknown	gnl\|CDD\|223714
NZ_CP053841.1\|WP_106872600.1\|909713_910673_-\|methionine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224058
NZ_CP053841.1\|WP_106872587.1\|904160_904535_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|377754
NZ_CP053841.1\|WP_106872591.1\|904709_905681_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|222877
NZ_CP053841.1\|WP_106872585.1\|901969_904159_+\|phage-tail-tape-measure-protein	unknown	unknown	gnl\|CDD\|273790
NZ_CP053841.1\|WP_106872581.1\|901297_901531_+\|phage-tail-assembly-protein	unknown	unknown	gnl\|CDD\|378397
NZ_CP053841.1\|WP_106872593.1\|905844_906540_+\|DNA-adenine-methylase	unknown	unknown	gnl\|CDD\|223415
NZ_CP053841.1\|WP_106872564.1\|893069_894161_+\|baseplate-J/gp47-family-protein	unknown	unknown	gnl\|CDD\|377414
NZ_CP053841.1\|WP_106872596.1\|907833_908607_-\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224381
NZ_CP053841.1\|WP_106872580.1\|900642_901149_+\|phage-major-tail-tube-protein	unknown	unknown	gnl\|CDD\|377436
NZ_CP053841.1\|WP_106872598.1\|908898_909732_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224922
NZ_CP053841.1\|WP_106872566.1\|894157_895006_+\|phage-tail-protein-I	unknown	unknown	gnl\|CDD\|370616
NZ_CP053841.1\|WP_106872560.1\|892098_892554_+\|phage-baseplate-assembly-protein-V	unknown	unknown	gnl\|CDD\|368076
NZ_CP053841.1\|WP_106872583.1\|901652_901856_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053841.1\|WP_106872589.1\|904524_904716_+\|tail-protein-X	unknown	unknown	gnl\|CDD\|283209
NZ_CP053841.1\|WP_106872568.1\|895016_895877_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|372197
NZ_CP053841.1\|WP_106872571.1\|895887_896262_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053841.1\|WP_106872562.1\|892789_893077_+\|GPW/gp25-family-protein	unknown	unknown	gnl\|CDD\|134016

Protein	Function_ID	Function_description	E-value
NZ_CP053841.1\|WP_106872578.1\|899301_900435_+\|phage-tail-sheath-subtilisin-like-domain-containing-protein	gnl\|CDD\|164955	PHA02560, FI, major tail sheath protein; Provisional.	9.37648e-45
NZ_CP053841.1\|WP_106872575.1\|898020_899196_+\|hypothetical-protein	gnl\|CDD\|240612	cd12820, LbR_YadA-like, YadA-like, left-handed beta-roll. This group contains the collagen-binding domain virulence factor YadA an adhesion proteins of several Yersinia species, and related cell surface proteins, including Moraxella catarrhalis UspA-like proteins. The collagen-binding portion is found in the hydrophobic N-terminal region. YadA forms a matrix on the bacterial outer membrane, which mediates binding to collagen and epithelial cells. YadA inhibits the complement-activating pathway with the coating of the cell surface with factor H, which impedes C3b molecules. These domains form a left handed beta roll made up of a series of short repeated elements. UspA1 and UspA2 are part of a class of pathogenicity factors that act as cell surface adhesion molecules, in which N-terminal head and neck domains extend from the bacterial outer membrane. The UspA1 head domain of Moraxella catarrhalis, is formed from trimeric left-handed parallel beta-helices of 14-16 amino acid repeats. The UspA1 head domain connects to a neck region of large extended, charged loops that maybe be ligand binding, which is in turn connected to an extended coiled coil domain that tethers the head and neck region to the cell surface via a transmembrane region.	2.37194e-07
NZ_CP053841.1\|WP_157940037.1\|896254_898018_+\|SPASM-domain-containing-protein	gnl\|CDD\|223714	COG0641, AslB, Arylsulfatase regulator (Fe-S oxidoreductase) [General function prediction only].	1.56842e-18
NZ_CP053841.1\|WP_106872600.1\|909713_910673_-\|methionine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224058	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism].	2.90797e-146
NZ_CP053841.1\|WP_106872587.1\|904160_904535_+\|phage-tail-protein	gnl\|CDD\|377754	pfam06995, Phage_P2_GpU, Phage P2 GpU. This family consists of several bacterial and phage proteins of around 130 residues in length which seem to be related to the bacteriophage P2 GpU protein, which is thought to be involved in tail assembly.	5.91413e-20
NZ_CP053841.1\|WP_106872591.1\|904709_905681_+\|phage-tail-protein	gnl\|CDD\|222877	PHA02561, D, tail protein; Provisional.	6.28089e-43
NZ_CP053841.1\|WP_106872581.1\|901297_901531_+\|phage-tail-assembly-protein	gnl\|CDD\|378397	pfam10109, Phage_TAC_7, Phage tail assembly chaperone proteins, E, or 41 or 14. This is family of various Myoviridae bacteriophage tail assembly chaperone, or TAC, proteins.	0.000305008
NZ_CP053841.1\|WP_106872593.1\|905844_906540_+\|DNA-adenine-methylase	gnl\|CDD\|223415	COG0338, Dam, Site-specific DNA methylase [DNA replication, recombination, and repair].	6.99675e-39
NZ_CP053841.1\|WP_106872564.1\|893069_894161_+\|baseplate-J/gp47-family-protein	gnl\|CDD\|377414	pfam04865, Baseplate_J, Baseplate J-like protein. The P2 bacteriophage J protein lies at the edge of the baseplate. This family also includes a number of bacterial homologs, which are thought to have been horizontally transferred.	1.50853e-29
NZ_CP053841.1\|WP_106872596.1\|907833_908607_-\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	2.29178e-122
NZ_CP053841.1\|WP_106872580.1\|900642_901149_+\|phage-major-tail-tube-protein	gnl\|CDD\|377436	pfam04985, Phage_tube, Phage tail tube protein FII. The major structural components of the contractile tail of bacteriophage P2 are proteins FI and FII, which are believed to be the tail sheath and tube proteins, respectively.	3.22783e-32
NZ_CP053841.1\|WP_106872598.1\|908898_909732_-\|ABC-transporter-permease	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	4.10048e-94
NZ_CP053841.1\|WP_106872560.1\|892098_892554_+\|phage-baseplate-assembly-protein-V	gnl\|CDD\|368076	pfam04717, Phage_base_V, Type VI secretion system, phage-baseplate injector. Family of bacterial and phage baseplate assembly proteins responsible for forming the small spike at the end of the tail or bacterial pathogenic needle-shaft.	1.12422e-13
NZ_CP053841.1\|WP_106872585.1\|901969_904159_+\|phage-tail-tape-measure-protein	gnl\|CDD\|273790	TIGR01760, COG5283:_Phage-related_tail_protein, phage tail tape measure protein, TP901 family, core region. This model represents a reasonably well conserved core region of a family of phage tail proteins. The member from phage TP901-1 was characterized as a tail length tape measure protein in that a shortened form of the protein leads to phage with proportionately shorter tails. [Mobile and extrachromosomal element functions, Prophage functions].	1.32913e-62
NZ_CP053841.1\|WP_106872566.1\|894157_895006_+\|phage-tail-protein-I	gnl\|CDD\|370616	pfam09684, Tail_P2_I, Phage tail protein (Tail_P2_I). These sequences represent the family of phage P2 protein I and related tail proteins from a number of temperate phage of Gram-negative bacteria.	4.64202e-29
NZ_CP053841.1\|WP_106872589.1\|904524_904716_+\|tail-protein-X	gnl\|CDD\|283209	pfam05489, Phage_tail_X, Phage Tail Protein X. This domain is found in a family of phage tail proteins. Visual analysis suggests that it is related to pfam01476 (personal obs: C Yeats). The functional annotation of family members further confirms this hypothesis.	1.10435e-08
NZ_CP053841.1\|WP_106872568.1\|895016_895877_+\|phage-tail-protein	gnl\|CDD\|372197	pfam12571, DUF3751, Phage tail-collar fibre protein. This domain family is found in bacteria and viruses, and is approximately 160 amino acids in length. There are two completely conserved residues (K and W) that may be functionally important. The members are annotated as being putative phage tail or tail-collar proteins.	3.58383e-54
NZ_CP053841.1\|WP_106872562.1\|892789_893077_+\|GPW/gp25-family-protein	gnl\|CDD\|134016	PHA02516, W, baseplate wedge subunit; Provisional.	3.47496e-18

>NZ_CP053841.1|WP_106872580.1|900642_901149_+|phage-major-tail-tube-protein
MRIAPMVLQEANVFINGKGYLGVTKKFKIPTLEQEVTQAKGALTTEYSAGVFKPMEVEIPLSVVDFNLYAGFGLNNLTNKIPLLIKGSIHQSGKEKQELALAITGDFKSIEHGDYEAGAEFETTLKASVHFMSLTIDGKPLIVYDVDNMICIVGGVDYMSKVRSILEE
>NZ_CP053841.1|WP_106872578.1|899301_900435_+|phage-tail-sheath-subtilisin-like-domain-containing-protein
MAVANYGVNVTIAAEAARPIKVESLTPIGIVGDALNLDEGVHFFVNTTEALSKLSEESVDGSVLRAVEAINDQAVETPIILSVFEKASDDNENITKVINATEEFKFAKSKFGYRPNLLIAPEYSGEDAVKSELEKMATKLKATAIVDLDANDVSEAKQKMSEFGTKRVIAAWPHVKIWDKKTKDYVFAPQSARIAGMIAAVDGAWEYGFSDSYSNRVMLGISGTQYPIDFEPGEGACSADLLRSAGISTIINEQGFRTWGGETTDGDTIWQDLARVRTFDRISEAGQKGVFFAIDKRASTLYHAKRSIEEMLRAFVGANVLLGFELSWSARNTLANITAGKFYLDIRMQNDPIVKQLTLDFIYVDSYGSVLMDKLNK
>NZ_CP053841.1|WP_106872575.1|898020_899196_+|hypothetical-protein
MAVFINSIIIGDNAKTSANDCVVFGANANTSELSSVAIGKDSKATREFEVSFGNESIKRVLSNIDSAKLANDAVNLEQLSTLEAKVEELKDEINRKISSVFRYKGSVLNASDLNKISDREIGDTYNVEASGANYVWDGKGWDRLNETIDLSLYARKDELANKVDIELLNGVYTKVDGFKKEIDSLNKQRLNFVGNIVFGHGLLKNETFLLLDDGAVLKDEYPELYKLYKGGVNEDELHFYLPSLPFSFGALELFINAGKRTILPNKKEFYNVEISNANIIHSQTIRKSAAPLLVTFKLKDGTSLQSENIPRGIDVKFLYAIDSHKIGVQHSSLGIDFKDGKDPQIVDIEIEVRAPEGATQVDGKWVVDGVELDTTPLLTPEGLELKGEINE
>NZ_CP053841.1|WP_157940037.1|896254_898018_+|SPASM-domain-containing-protein
MSKEFFTHTNLTFVPNSFCNFGCKYCYLGKLTENKDKNGDVISSLKKILEKITDDGVLVSSLNLHGAEVTTLPREILEGIFQTYQDYTQKYKVQLKSLNKHGENGIGIKTNLYNFDKLRDLFLKYNVFVSGSFDLPFTHHEKFRVLKNGKSTLDRVRENVLLLSKYPKNLQQISCTIGKFALLHFDEFCDDLEWLDEQGFDMVGKFYIMFIYDSANSHFKTGLSDDEMVLFYEKLLKRFKGTKFEDGIYYNWFKEFTHGYCSHQINCGATNHLYQKSGDVYPCHRSQPDGRLKYGNIFEKGFLEITKSGIEKMKNYEASNKAIHSDCMECDYFHICNMGCPVERMDRKSSKSYTCKLQLALYKAQPKRFKADKVASIRARDAYINQMQPNVYLDEKVARPMRFNPEMIEVKNSLNAIIQRDEKLKTLYKNGAIKLRINDNELIPLFSTTKLRKQLNINLFKSDKLEILVEYEYMGLNDSDENSLFIMFLNNTSVVYGDEQRVKMSHIGEYIVHKSKGVKEDGHYVFNINEFFLKTSNKFLNEEFANLVCFTTTNARAVHYKKQSLNAFYHLEAINLPFHEFRFNYKE
>NZ_CP053841.1|WP_106872571.1|895887_896262_+|hypothetical-protein
MGFVRLSKDDIKNFVNELTRLEGKKSELNKSKKDIKKKEHLDERIEAIKRVLAGKDDEYDAFLDIVYTLIWDEGAISTLASEYKELKTYAKGALKNEFEKRREVYHLYYLAKNSIEMPEGYYDV
>NZ_CP053841.1|WP_106872568.1|895016_895877_+|phage-tail-protein
MNDYYTILTKQGIDLIVKSRVSKVPIELSEIAVGDGEGLPSEDMKALKNEKHRFKINTITQDEQNPSYLIIEGVLPSSVGGFYVSEVGIFDKENRLFAIGNMAKTYKPLLSEGSAKDIVFKIVIEVSNASEVTLKVDESVVLATREWVKTTFLTKQSASEVYETKKYNDEFYLKKVDASNTYATKKGLKDVEIKADNAQKTAESIKIKAENLDIKTQFRDIVTGTKTIRKKRDKSKNSPMITITITTNAKQQRTLVNNIPTGDWQTISTWETRNGNNNNNGNNNTK
>NZ_CP053841.1|WP_106872566.1|894157_895006_+|phage-tail-protein-I
MSHILPNHKAKIDKKFDELFGLRFDELNINVINTLAYKCPSKLLPILAKSFDVSIAGLNEKNARELIFNAFEIHYYSGTIYSLSKALKSFFGDSKVIEWFDYKGKPYHFKVELDISKHGLLKEDYEKIDGLIEEYKNVRSVLGGITLISKNKGVEFNALATLSGEITTIYPFVLRNLNTHFKNYYALALIQTEIYKTTILKSDPMPIKIYNLAHKNGLLSGELKGVGGNFNLIINDSFVFGFERSNKLEMMFKGVVKDGNEFSVVIKDSINSSSKYRVIANN
>NZ_CP053841.1|WP_106872564.1|893069_894161_+|baseplate-J/gp47-family-protein
MVDLKSLPFPKVIEELKYDELLNNIKTLFIGYLNNEEIKLLESDRFSALLETLAYRELILRARINSSVKAMLLPYATGSDLDNVVAIYGINRLSGAKPTANFEFSLSQISNNDTIIPKGTILSDGDTLTATLNENVVISAGELKAQGLAKLNLESKESDIKTEYIQTPLPFLLKAKQLSPYSGGSDREDDERLRKRAILSLERFSTAGAKKAYIYQTLSATPKVLEASVRNGGAGIVQIYIKSLDMSELVVKEVKEYLSGEMVRPLTDNVEVYNATVKEVSINADVGLVSLDSMSEVDSSIKKALPSSLKIGEDLNISRIYKALHQNGVYRAKLKLPQGDITADESEFIKIINVDLNYKKASL
>NZ_CP053841.1|WP_106872562.1|892789_893077_+|GPW/gp25-family-protein
MKYLVSIEESIRDILLTPLGSRVMLPLYGSRIFELIDKRLDDKFRANLAYYVIEAVERWEKRVKIDRVILNSLKDGILDFSIKLKNGDEIRIKNG
>NZ_CP053841.1|WP_106872560.1|892098_892554_+|phage-baseplate-assembly-protein-V
MNKIGIISEVKDDKARVAIGSLVTDFLKVFMPLANSYAVAASPIKVGEQVLVMAVEGDINSGVILRGLFYDKHKLEVKDNECEVVFSDGVKMSYNTSSSTLTITAPKNINIKTTTFNIDGNLKVSGDISDSRGDLTGHSHNDTDGFVSSPR
>NZ_CP053841.1|WP_106872581.1|901297_901531_+|phage-tail-assembly-protein
MKSIKIELSDRTVEMFEPTVRVLKNANLKDGEVAQAVAMIAATTNMKENEIEDMGLKDYMALQKGLNSFLEVAGVTA
>NZ_CP053841.1|WP_106872583.1|901652_901856_+|hypothetical-protein
MRWLKSSFLPCFFRYALNRQSIGYKTMHKANPKGIIRIGVKKAVQIAFPKTSTKPSSGMSKIVQKKE
>NZ_CP053841.1|WP_106872585.1|901969_904159_+|phage-tail-tape-measure-protein
MSSEVVGITIGMAIKGIGELIKVDNCFDKLKLNLKQTHGSLKNFSRDLAKLKINENALSKIKLNKEALQGEFLSVTSMLARSATLVIPTKMAIDFEESMADVRKVVDFKNKVEMNAFGKNIMELSRTIPLSAKELATITASGGQLGIAKENLLEFTTIAAKMGVAFDMSADEAGDSMGKLMNIFKFNIKEVTKLGDAINHLSDNSASKANEVVAVLKRIGGTGKTIGLTAVQTAALASSFISLGKTPELAATSADTLMKRLGNIKEDTKTTDALSKLGLDTNYVKIGMKTDPQKMIISFLEKVKNIPKEEQLSVLTDIFGDGFSGDIALLVNGLDTYKKALKDTANEKDYLNSMEEEFKNKSDTTANALELFKNSIKEIGINIGSSFLPALATSAKGLATFVSKVVDLLNSVPGLTKALSFSIFGFLILKPAILAAKIVCLYFKTSVFLLNGAFLKLKIVIKSSILLTRRLLITQKIATFTTTIFTKATKLLSIAMAGVSKVFRVVALGIRALSVAIAANPIGLVLAVIGGVATYVIMNWDKVKVYLIRFLEWIKPVFEPVINAIKIVWEKLSIFFKPLIEGWKLTFKAFGDFISLIFADPVEAIKKLFEPLFKWFEDKFGWVSKTTLSVTGLGSKALDSIKGVGTSIKEGASGMLDGAMSFLGFGSDEQKDSNNNLISQSFDNRQTAPAYNFNFGDINPNVDVEALKKVVMYELDRQNRNARNRSIRD
>NZ_CP053841.1|WP_106872587.1|904160_904535_+|phage-tail-protein
MVLVLGGYEFSWQMINNMGLESEFGLSENERVANYPSLFRANLGKQNITLNCKTLPFAKHGNSALKPLYDLASLGLSYPLVSGNGEYFGRFVIEKISENRAIFTKDGHFFTQTFNLTLKRDYDI
>NZ_CP053841.1|WP_106872589.1|904524_904716_+|tail-protein-X
MIYKAKENERLDSIVYRHYGGLKHFELVLEINAKLGVKLKAGDRVILPEIKEKEEIKELKSLW
>NZ_CP053841.1|WP_106872591.1|904709_905681_+|phage-tail-protein
MVRVPNFKLIAKGKDITKTIKKELIELSFEDKEGSESDEISFRVNGIYQKPFFGDSLELWLGYGDELFKCGKFSVQTTETDYTANTTEVRATAVNFASPIKVKKSRTWQDTTLFTIVKKIADENSLSVKIAGDDFNVSSKLQDNLSDLDFLYGLCFELNYLMAVKNGAIIVTSKDARSDELGSKVTPKNKALPKNEIRLSECHTLRISSANRNVYNATILEWQDSESGKTKSIKVGSGNNAYKMRIAAPKSDAEAFKIGESKLNELQRGGINGSLECDGKEVKAGGKLKLIGVANYEDVEFSIKSVTHTLNNTTYTISVEFEG
>NZ_CP053841.1|WP_106872593.1|905844_906540_+|DNA-adenine-methylase
MIPLMPEHTRYVEVFGGAMSVFYQKEPSKIEVVNDINGDLINLHKVIRTRPQSIEMVLRTMFRSRELFYDIKNGRIKPRSNIERAALYYYLISTSFGSKGDNFAMGKSRAGKNIYRSFIAHSKRLKRALIENLSYEKLIKEYDSDETLFYLDPPYVGTENYYKMVNGFTIKDHELLANLLKEIKGKFILSYNDCEVVRELYKGFNFKELSIRYSVNARVAKRSKELLIMNF
>NZ_CP053841.1|WP_106872596.1|907833_908607_-|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein
MKKITTILATIGLTLSLNAAEKIIVGATPVPHAEILEVIKPELKKAGYDLEIKVFNDYVVPNLAVNDGEIDANYFQHIPYLKEFNKNKGTNLVETVGVHLEPMGVYSKKIKNLSELKDGSKVSIPNDPTNESRALDVLETAGLIKLDKNVVLKTPLDIVENPKNLEFVEIEAATLPRTLDDVEISVINTNYALSAGFNPLKDALALESKDSPYTNIVAVKAENKDSKKIKALNEALQTEVVKKFILEKYEGSILPTF
>NZ_CP053841.1|WP_106872598.1|908898_909732_-|ABC-transporter-permease
MGASKMRVIILILTLGLFFLYPFFVGESIFSTMDTKILNSPFFENMFLGIGGWFEGLIGSKAYRIWIDILLKATWETLYMSITATFFATFFGLLTAVVLVLTRKGGLMENKPLYAFLDLVVNIFRSFPFIILIIVLFPFVKLIVGTSIGTDASIVPLTIGTAPFIARLIENALIEVDDGVIEAAKSYGASNFQIIFRIMLVEAIPALVNVLTLTLIVVIGFSAMAGTLGGGGLGDVAIRYGFQRFMADIMAYTVIILIVMVQIFQMIGNNVYKKVKR
>NZ_CP053841.1|WP_106872600.1|909713_910673_-|methionine-ABC-transporter-ATP-binding-protein
MIKVKNLVKSYGNIEVLKDINFEVKKGEIFALVGHSGAGKSTLLRCMNGLENYQGGSLKINGVEINSIKGKELREFRKNVGMIFQHFALMSRKTVFENVAIPLIFWKYDKEYIEKRVYELLEIVGLKDKAHVYPNELSGGQKQRVAIARALALNPEILLSDEATSALDPNTTKSILELLAKINKEFGITIVIVTHEMEVVKSIAHKAILLVNGVITNNGMIDELFLQPDENMREFLGEEEILPQTGTNIRLCFPKDVAFNPVITSMAKDLNIDFNIVWGRIEKLGEDVLGILVINLEDEHSKKVEQYLEKSGVIWELVK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP053841_1	1.9\|71336\|23\|NZ_CP053841\|PILER-CR	71336-71358	23	NZ_CP016589	Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-01, complete sequence	378526-378548	2	0.913
NZ_CP053841_1	1.8\|71395\|30\|NZ_CP053841\|CRISPRCasFinder,CRT	71395-71424	30	NZ_LR217736	Candidatus Erwinia haradaeae strain ErCisplendens isolate 3004 plasmid pBioThi	4131-4160	4	0.867
NZ_CP053841_1	1.8\|71395\|30\|NZ_CP053841\|CRISPRCasFinder,CRT	71395-71424	30	MK250023	Prevotella phage Lak-B4, complete genome	319891-319920	4	0.867
NZ_CP053841_1	1.8\|71395\|30\|NZ_CP053841\|CRISPRCasFinder,CRT	71395-71424	30	MK250027	Prevotella phage Lak-B8, complete genome	318583-318612	4	0.867
NZ_CP053841_1	1.8\|71395\|30\|NZ_CP053841\|CRISPRCasFinder,CRT	71395-71424	30	MK250026	Prevotella phage Lak-B7, complete genome	317641-317670	4	0.867
NZ_CP053841_1	1.10\|71401\|30\|NZ_CP053841\|PILER-CR	71401-71430	30	NZ_LR217736	Candidatus Erwinia haradaeae strain ErCisplendens isolate 3004 plasmid pBioThi	4131-4160	4	0.867
NZ_CP053841_1	1.10\|71401\|30\|NZ_CP053841\|PILER-CR	71401-71430	30	MK250023	Prevotella phage Lak-B4, complete genome	319891-319920	4	0.867
NZ_CP053841_1	1.10\|71401\|30\|NZ_CP053841\|PILER-CR	71401-71430	30	MK250027	Prevotella phage Lak-B8, complete genome	318583-318612	4	0.867
NZ_CP053841_1	1.10\|71401\|30\|NZ_CP053841\|PILER-CR	71401-71430	30	MK250026	Prevotella phage Lak-B7, complete genome	317641-317670	4	0.867
NZ_CP053841_1	1.8\|71395\|30\|NZ_CP053841\|CRISPRCasFinder,CRT	71395-71424	30	MH675552	Bacteroides phage crAss001, complete genome	79903-79932	5	0.833
NZ_CP053841_1	1.10\|71401\|30\|NZ_CP053841\|PILER-CR	71401-71430	30	MH675552	Bacteroides phage crAss001, complete genome	79903-79932	5	0.833
NZ_CP053841_1	1.7\|71330\|29\|NZ_CP053841\|CRISPRCasFinder,CRT	71330-71358	29	NZ_CP053316	Bacillus circulans strain GN03 plasmid unnamed, complete sequence	95152-95180	6	0.793
NZ_CP053841_1	1.8\|71395\|30\|NZ_CP053841\|CRISPRCasFinder,CRT	71395-71424	30	NZ_CP046076	Enterococcus faecium strain VRE plasmid p5_03A17012, complete sequence	83741-83770	6	0.8
NZ_CP053841_1	1.8\|71395\|30\|NZ_CP053841\|CRISPRCasFinder,CRT	71395-71424	30	NZ_AP019380	Buchnera aphidicola (Nipponaphis monzeni) strain Nmo isolate Tokyo2014 plasmid pLeu, complete sequence	7338-7367	6	0.8
NZ_CP053841_1	1.8\|71395\|30\|NZ_CP053841\|CRISPRCasFinder,CRT	71395-71424	30	NZ_CP019993	Enterococcus faecium isolate 2014-VREF-268 plasmid p268-1, complete sequence	77081-77110	6	0.8
NZ_CP053841_1	1.8\|71395\|30\|NZ_CP053841\|CRISPRCasFinder,CRT	71395-71424	30	NZ_CP033207	Enterococcus faecium strain RBWH1 plasmid pRBWH1.1, complete sequence	141902-141931	6	0.8
NZ_CP053841_1	1.8\|71395\|30\|NZ_CP053841\|CRISPRCasFinder,CRT	71395-71424	30	NZ_CP018129	Enterococcus faecium strain A_020709_82 plasmid unnamed1, complete sequence	108513-108542	6	0.8
NZ_CP053841_1	1.8\|71395\|30\|NZ_CP053841\|CRISPRCasFinder,CRT	71395-71424	30	LT603679	Enterococcus faecium isolate Ef_DMG1500501 genome assembly, plasmid: 2	181247-181276	6	0.8
NZ_CP053841_1	1.8\|71395\|30\|NZ_CP053841\|CRISPRCasFinder,CRT	71395-71424	30	NZ_CP041262	Enterococcus faecium strain VVEswe-R plasmid pVVEswe-R1, complete sequence	156092-156121	6	0.8
NZ_CP053841_1	1.8\|71395\|30\|NZ_CP053841\|CRISPRCasFinder,CRT	71395-71424	30	NZ_CP027498	Enterococcus faecium strain AUSMDU00004167 plasmid unnamed1, complete sequence	145498-145527	6	0.8
NZ_CP053841_1	1.8\|71395\|30\|NZ_CP053841\|CRISPRCasFinder,CRT	71395-71424	30	NZ_LR135333	Enterococcus faecium isolate E7471 plasmid 3	89932-89961	6	0.8
NZ_CP053841_1	1.8\|71395\|30\|NZ_CP053841\|CRISPRCasFinder,CRT	71395-71424	30	NZ_LR135244	Enterococcus faecium isolate E6988 plasmid 2	126145-126174	6	0.8
NZ_CP053841_1	1.8\|71395\|30\|NZ_CP053841\|CRISPRCasFinder,CRT	71395-71424	30	NZ_LR135294	Enterococcus faecium isolate E7237 plasmid 2	168558-168587	6	0.8
NZ_CP053841_1	1.8\|71395\|30\|NZ_CP053841\|CRISPRCasFinder,CRT	71395-71424	30	NZ_LR135255	Enterococcus faecium isolate E7098 plasmid 2	105898-105927	6	0.8
NZ_CP053841_1	1.8\|71395\|30\|NZ_CP053841\|CRISPRCasFinder,CRT	71395-71424	30	NZ_CP019209	Enterococcus faecium strain 2014-VREF-41 plasmid p41-1, complete sequence	31503-31532	6	0.8
NZ_CP053841_1	1.8\|71395\|30\|NZ_CP053841\|CRISPRCasFinder,CRT	71395-71424	30	NZ_CP019989	Enterococcus faecium isolate 2014-VREF-63 plasmid p63-1, complete sequence	160240-160269	6	0.8
NZ_CP053841_1	1.8\|71395\|30\|NZ_CP053841\|CRISPRCasFinder,CRT	71395-71424	30	NZ_LR135227	Enterococcus faecium isolate E7025 plasmid 2	108751-108780	6	0.8
NZ_CP053841_1	1.8\|71395\|30\|NZ_CP053841\|CRISPRCasFinder,CRT	71395-71424	30	NZ_LR135489	Enterococcus faecium isolate E8414 plasmid 2	129899-129928	6	0.8
NZ_CP053841_1	1.8\|71395\|30\|NZ_CP053841\|CRISPRCasFinder,CRT	71395-71424	30	NZ_LR135415	Enterococcus faecium isolate E8328 plasmid 2	138788-138817	6	0.8
NZ_CP053841_1	1.8\|71395\|30\|NZ_CP053841\|CRISPRCasFinder,CRT	71395-71424	30	NZ_LR135395	Enterococcus faecium isolate E8290 plasmid 2	138788-138817	6	0.8
NZ_CP053841_1	1.8\|71395\|30\|NZ_CP053841\|CRISPRCasFinder,CRT	71395-71424	30	NZ_LR135325	Enterococcus faecium isolate E7654 plasmid 2	123535-123564	6	0.8
NZ_CP053841_1	1.8\|71395\|30\|NZ_CP053841\|CRISPRCasFinder,CRT	71395-71424	30	NZ_LR135358	Enterococcus faecium isolate E7948 plasmid 2	253682-253711	6	0.8
NZ_CP053841_1	1.8\|71395\|30\|NZ_CP053841\|CRISPRCasFinder,CRT	71395-71424	30	NZ_LR135409	Enterococcus faecium isolate E8284 plasmid 2	138788-138817	6	0.8
NZ_CP053841_1	1.8\|71395\|30\|NZ_CP053841\|CRISPRCasFinder,CRT	71395-71424	30	NZ_LR135385	Enterococcus faecium isolate E7933 plasmid 2	137306-137335	6	0.8
NZ_CP053841_1	1.8\|71395\|30\|NZ_CP053841\|CRISPRCasFinder,CRT	71395-71424	30	NZ_CP044265	Enterococcus faecium strain V1836 plasmid pHVH-V1836-1, complete sequence	155361-155390	6	0.8
NZ_CP053841_1	1.8\|71395\|30\|NZ_CP053841\|CRISPRCasFinder,CRT	71395-71424	30	NZ_LR135318	Enterococcus faecium isolate E7663 plasmid 2	123506-123535	6	0.8
NZ_CP053841_1	1.8\|71395\|30\|NZ_CP053841\|CRISPRCasFinder,CRT	71395-71424	30	NZ_CP014530	Enterococcus faecium strain E745 plasmid pl1, complete sequence	109298-109327	6	0.8
NZ_CP053841_1	1.8\|71395\|30\|NZ_CP053841\|CRISPRCasFinder,CRT	71395-71424	30	NZ_CP023424	Enterococcus faecium strain K60-39 plasmid pTT39_p1, complete sequence	156380-156409	6	0.8
NZ_CP053841_1	1.8\|71395\|30\|NZ_CP053841\|CRISPRCasFinder,CRT	71395-71424	30	NC_017963	Enterococcus faecium DO plasmid 3, complete sequence	156938-156967	6	0.8
NZ_CP053841_1	1.8\|71395\|30\|NZ_CP053841\|CRISPRCasFinder,CRT	71395-71424	30	NZ_CP041271	Enterococcus faecium strain VVEswe-S plasmid pVVEswe-S1, complete sequence	156101-156130	6	0.8
NZ_CP053841_1	1.10\|71401\|30\|NZ_CP053841\|PILER-CR	71401-71430	30	NZ_CP046076	Enterococcus faecium strain VRE plasmid p5_03A17012, complete sequence	83741-83770	6	0.8
NZ_CP053841_1	1.10\|71401\|30\|NZ_CP053841\|PILER-CR	71401-71430	30	NZ_AP019380	Buchnera aphidicola (Nipponaphis monzeni) strain Nmo isolate Tokyo2014 plasmid pLeu, complete sequence	7338-7367	6	0.8
NZ_CP053841_1	1.10\|71401\|30\|NZ_CP053841\|PILER-CR	71401-71430	30	NZ_CP019993	Enterococcus faecium isolate 2014-VREF-268 plasmid p268-1, complete sequence	77081-77110	6	0.8
NZ_CP053841_1	1.10\|71401\|30\|NZ_CP053841\|PILER-CR	71401-71430	30	NZ_CP033207	Enterococcus faecium strain RBWH1 plasmid pRBWH1.1, complete sequence	141902-141931	6	0.8
NZ_CP053841_1	1.10\|71401\|30\|NZ_CP053841\|PILER-CR	71401-71430	30	NZ_CP018129	Enterococcus faecium strain A_020709_82 plasmid unnamed1, complete sequence	108513-108542	6	0.8
NZ_CP053841_1	1.10\|71401\|30\|NZ_CP053841\|PILER-CR	71401-71430	30	LT603679	Enterococcus faecium isolate Ef_DMG1500501 genome assembly, plasmid: 2	181247-181276	6	0.8
NZ_CP053841_1	1.10\|71401\|30\|NZ_CP053841\|PILER-CR	71401-71430	30	NZ_CP041262	Enterococcus faecium strain VVEswe-R plasmid pVVEswe-R1, complete sequence	156092-156121	6	0.8
NZ_CP053841_1	1.10\|71401\|30\|NZ_CP053841\|PILER-CR	71401-71430	30	NZ_CP027498	Enterococcus faecium strain AUSMDU00004167 plasmid unnamed1, complete sequence	145498-145527	6	0.8
NZ_CP053841_1	1.10\|71401\|30\|NZ_CP053841\|PILER-CR	71401-71430	30	NZ_LR135333	Enterococcus faecium isolate E7471 plasmid 3	89932-89961	6	0.8
NZ_CP053841_1	1.10\|71401\|30\|NZ_CP053841\|PILER-CR	71401-71430	30	NZ_LR135244	Enterococcus faecium isolate E6988 plasmid 2	126145-126174	6	0.8
NZ_CP053841_1	1.10\|71401\|30\|NZ_CP053841\|PILER-CR	71401-71430	30	NZ_LR135294	Enterococcus faecium isolate E7237 plasmid 2	168558-168587	6	0.8
NZ_CP053841_1	1.10\|71401\|30\|NZ_CP053841\|PILER-CR	71401-71430	30	NZ_LR135255	Enterococcus faecium isolate E7098 plasmid 2	105898-105927	6	0.8
NZ_CP053841_1	1.10\|71401\|30\|NZ_CP053841\|PILER-CR	71401-71430	30	NZ_CP019209	Enterococcus faecium strain 2014-VREF-41 plasmid p41-1, complete sequence	31503-31532	6	0.8
NZ_CP053841_1	1.10\|71401\|30\|NZ_CP053841\|PILER-CR	71401-71430	30	NZ_CP019989	Enterococcus faecium isolate 2014-VREF-63 plasmid p63-1, complete sequence	160240-160269	6	0.8
NZ_CP053841_1	1.10\|71401\|30\|NZ_CP053841\|PILER-CR	71401-71430	30	NZ_LR135227	Enterococcus faecium isolate E7025 plasmid 2	108751-108780	6	0.8
NZ_CP053841_1	1.10\|71401\|30\|NZ_CP053841\|PILER-CR	71401-71430	30	NZ_LR135489	Enterococcus faecium isolate E8414 plasmid 2	129899-129928	6	0.8
NZ_CP053841_1	1.10\|71401\|30\|NZ_CP053841\|PILER-CR	71401-71430	30	NZ_LR135415	Enterococcus faecium isolate E8328 plasmid 2	138788-138817	6	0.8
NZ_CP053841_1	1.10\|71401\|30\|NZ_CP053841\|PILER-CR	71401-71430	30	NZ_LR135395	Enterococcus faecium isolate E8290 plasmid 2	138788-138817	6	0.8
NZ_CP053841_1	1.10\|71401\|30\|NZ_CP053841\|PILER-CR	71401-71430	30	NZ_LR135325	Enterococcus faecium isolate E7654 plasmid 2	123535-123564	6	0.8
NZ_CP053841_1	1.10\|71401\|30\|NZ_CP053841\|PILER-CR	71401-71430	30	NZ_LR135358	Enterococcus faecium isolate E7948 plasmid 2	253682-253711	6	0.8
NZ_CP053841_1	1.10\|71401\|30\|NZ_CP053841\|PILER-CR	71401-71430	30	NZ_LR135409	Enterococcus faecium isolate E8284 plasmid 2	138788-138817	6	0.8
NZ_CP053841_1	1.10\|71401\|30\|NZ_CP053841\|PILER-CR	71401-71430	30	NZ_LR135385	Enterococcus faecium isolate E7933 plasmid 2	137306-137335	6	0.8
NZ_CP053841_1	1.10\|71401\|30\|NZ_CP053841\|PILER-CR	71401-71430	30	NZ_CP044265	Enterococcus faecium strain V1836 plasmid pHVH-V1836-1, complete sequence	155361-155390	6	0.8
NZ_CP053841_1	1.10\|71401\|30\|NZ_CP053841\|PILER-CR	71401-71430	30	NZ_LR135318	Enterococcus faecium isolate E7663 plasmid 2	123506-123535	6	0.8
NZ_CP053841_1	1.10\|71401\|30\|NZ_CP053841\|PILER-CR	71401-71430	30	NZ_CP014530	Enterococcus faecium strain E745 plasmid pl1, complete sequence	109298-109327	6	0.8
NZ_CP053841_1	1.10\|71401\|30\|NZ_CP053841\|PILER-CR	71401-71430	30	NZ_CP023424	Enterococcus faecium strain K60-39 plasmid pTT39_p1, complete sequence	156380-156409	6	0.8
NZ_CP053841_1	1.10\|71401\|30\|NZ_CP053841\|PILER-CR	71401-71430	30	NC_017963	Enterococcus faecium DO plasmid 3, complete sequence	156938-156967	6	0.8
NZ_CP053841_1	1.10\|71401\|30\|NZ_CP053841\|PILER-CR	71401-71430	30	NZ_CP041271	Enterococcus faecium strain VVEswe-S plasmid pVVEswe-S1, complete sequence	156101-156130	6	0.8
NZ_CP053841_1	1.1\|70936\|30\|NZ_CP053841\|PILER-CR,CRISPRCasFinder,CRT	70936-70965	30	KR131710	Fusobacterium phage Funu1, complete genome	143-172	7	0.767
NZ_CP053841_1	1.7\|71330\|29\|NZ_CP053841\|CRISPRCasFinder,CRT	71330-71358	29	NZ_CP016589	Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-01, complete sequence	378526-378554	7	0.759
NZ_CP053841_1	1.7\|71330\|29\|NZ_CP053841\|CRISPRCasFinder,CRT	71330-71358	29	NC_031056	Bacillus phage Deep Blue, complete genome	14139-14167	7	0.759
NZ_CP053841_1	1.8\|71395\|30\|NZ_CP053841\|CRISPRCasFinder,CRT	71395-71424	30	NZ_CP029459	Clostridium novyi strain 150557 plasmid pCN1, complete sequence	43701-43730	7	0.767
NZ_CP053841_1	1.8\|71395\|30\|NZ_CP053841\|CRISPRCasFinder,CRT	71395-71424	30	NC_002120	Yersinia enterocolitica W22703 plasmid pYVe227, complete sequence	11654-11683	7	0.767
NZ_CP053841_1	1.8\|71395\|30\|NZ_CP053841\|CRISPRCasFinder,CRT	71395-71424	30	NZ_CP011287	Yersinia enterocolitica strain KNG22703 plasmid, complete sequence	13355-13384	7	0.767
NZ_CP053841_1	1.8\|71395\|30\|NZ_CP053841\|CRISPRCasFinder,CRT	71395-71424	30	NC_015475	Yersinia enterocolitica subsp. palearctica 105.5R(r) plasmid 105.5R(r)p, complete sequence	4436-4465	7	0.767
NZ_CP053841_1	1.8\|71395\|30\|NZ_CP053841\|CRISPRCasFinder,CRT	71395-71424	30	NZ_CP030981	Yersinia enterocolitica subsp. palearctica strain Y1 plasmid pYV, complete sequence	37412-37441	7	0.767
NZ_CP053841_1	1.8\|71395\|30\|NZ_CP053841\|CRISPRCasFinder,CRT	71395-71424	30	NZ_CP046059	Microcystis aeruginosa NIES-298 plasmid unnamed1, complete sequence	8128-8157	7	0.767
NZ_CP053841_1	1.8\|71395\|30\|NZ_CP053841\|CRISPRCasFinder,CRT	71395-71424	30	NC_017565	Yersinia enterocolitica subsp. palearctica Y11 plasmid pYV03, complete sequence	66658-66687	7	0.767
NZ_CP053841_1	1.8\|71395\|30\|NZ_CP053841\|CRISPRCasFinder,CRT	71395-71424	30	NZ_CP009837	Yersinia enterocolitica strain 2516-87 plasmid pCD, complete sequence	62986-63015	7	0.767
NZ_CP053841_1	1.8\|71395\|30\|NZ_CP053841\|CRISPRCasFinder,CRT	71395-71424	30	LC425520	Uncultured phage DNA, contig: NODE385	14637-14666	7	0.767
NZ_CP053841_1	1.10\|71401\|30\|NZ_CP053841\|PILER-CR	71401-71430	30	NZ_CP029459	Clostridium novyi strain 150557 plasmid pCN1, complete sequence	43701-43730	7	0.767
NZ_CP053841_1	1.10\|71401\|30\|NZ_CP053841\|PILER-CR	71401-71430	30	NC_002120	Yersinia enterocolitica W22703 plasmid pYVe227, complete sequence	11654-11683	7	0.767
NZ_CP053841_1	1.10\|71401\|30\|NZ_CP053841\|PILER-CR	71401-71430	30	NZ_CP011287	Yersinia enterocolitica strain KNG22703 plasmid, complete sequence	13355-13384	7	0.767
NZ_CP053841_1	1.10\|71401\|30\|NZ_CP053841\|PILER-CR	71401-71430	30	NC_015475	Yersinia enterocolitica subsp. palearctica 105.5R(r) plasmid 105.5R(r)p, complete sequence	4436-4465	7	0.767
NZ_CP053841_1	1.10\|71401\|30\|NZ_CP053841\|PILER-CR	71401-71430	30	NZ_CP030981	Yersinia enterocolitica subsp. palearctica strain Y1 plasmid pYV, complete sequence	37412-37441	7	0.767
NZ_CP053841_1	1.10\|71401\|30\|NZ_CP053841\|PILER-CR	71401-71430	30	NZ_CP046059	Microcystis aeruginosa NIES-298 plasmid unnamed1, complete sequence	8128-8157	7	0.767
NZ_CP053841_1	1.10\|71401\|30\|NZ_CP053841\|PILER-CR	71401-71430	30	NC_017565	Yersinia enterocolitica subsp. palearctica Y11 plasmid pYV03, complete sequence	66658-66687	7	0.767
NZ_CP053841_1	1.10\|71401\|30\|NZ_CP053841\|PILER-CR	71401-71430	30	NZ_CP009837	Yersinia enterocolitica strain 2516-87 plasmid pCD, complete sequence	62986-63015	7	0.767
NZ_CP053841_1	1.10\|71401\|30\|NZ_CP053841\|PILER-CR	71401-71430	30	LC425520	Uncultured phage DNA, contig: NODE385	14637-14666	7	0.767
NZ_CP053841_1	1.3\|71068\|30\|NZ_CP053841\|PILER-CR,CRISPRCasFinder,CRT	71068-71097	30	NZ_CP039048	Piscirickettsia salmonis strain Psal-073 plasmid unnamed2, complete sequence	49390-49419	8	0.733
NZ_CP053841_1	1.3\|71068\|30\|NZ_CP053841\|PILER-CR,CRISPRCasFinder,CRT	71068-71097	30	NZ_CP038900	Piscirickettsia salmonis strain Psal-006b plasmid unnamed2, complete sequence	40474-40503	8	0.733
NZ_CP053841_1	1.5\|71200\|30\|NZ_CP053841\|CRISPRCasFinder,CRT	71200-71229	30	NZ_CP010270	Paenibacillus polymyxa strain Sb3-1 plasmid pSb31l, complete sequence	13053-13082	8	0.733
NZ_CP053841_1	1.8\|71395\|30\|NZ_CP053841\|CRISPRCasFinder,CRT	71395-71424	30	NZ_KT897275	Clostridium botulinum strain IFR 12/29 plasmid p12/29, complete sequence	6388-6417	8	0.733
NZ_CP053841_1	1.8\|71395\|30\|NZ_CP053841\|CRISPRCasFinder,CRT	71395-71424	30	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	400021-400050	8	0.733
NZ_CP053841_1	1.8\|71395\|30\|NZ_CP053841\|CRISPRCasFinder,CRT	71395-71424	30	NZ_CP034477	Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_3, complete sequence	104274-104303	8	0.733
NZ_CP053841_1	1.8\|71395\|30\|NZ_CP053841\|CRISPRCasFinder,CRT	71395-71424	30	NC_010181	Bacillus mycoides KBAB4 plasmid pBWB402, complete sequence	53567-53596	8	0.733
NZ_CP053841_1	1.8\|71395\|30\|NZ_CP053841\|CRISPRCasFinder,CRT	71395-71424	30	NZ_CP034472	Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_3, complete sequence	76759-76788	8	0.733
NZ_CP053841_1	1.8\|71395\|30\|NZ_CP053841\|CRISPRCasFinder,CRT	71395-71424	30	NC_023026	Francisella novicida strain PA10-7858 plasmid pFNPA10, complete sequence	7718-7747	8	0.733
NZ_CP053841_1	1.10\|71401\|30\|NZ_CP053841\|PILER-CR	71401-71430	30	NZ_KT897275	Clostridium botulinum strain IFR 12/29 plasmid p12/29, complete sequence	6388-6417	8	0.733
NZ_CP053841_1	1.10\|71401\|30\|NZ_CP053841\|PILER-CR	71401-71430	30	NZ_CP031069	Bacillus sp. JAS24-2 plasmid pl626, complete sequence	400021-400050	8	0.733
NZ_CP053841_1	1.10\|71401\|30\|NZ_CP053841\|PILER-CR	71401-71430	30	NZ_CP034477	Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_3, complete sequence	104274-104303	8	0.733
NZ_CP053841_1	1.10\|71401\|30\|NZ_CP053841\|PILER-CR	71401-71430	30	NC_010181	Bacillus mycoides KBAB4 plasmid pBWB402, complete sequence	53567-53596	8	0.733
NZ_CP053841_1	1.10\|71401\|30\|NZ_CP053841\|PILER-CR	71401-71430	30	NZ_CP034472	Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_3, complete sequence	76759-76788	8	0.733
NZ_CP053841_1	1.10\|71401\|30\|NZ_CP053841\|PILER-CR	71401-71430	30	NC_023026	Francisella novicida strain PA10-7858 plasmid pFNPA10, complete sequence	7718-7747	8	0.733
NZ_CP053841_1	1.1\|70936\|30\|NZ_CP053841\|PILER-CR,CRISPRCasFinder,CRT	70936-70965	30	NZ_CP009064	Borreliella afzelii K78 plasmid lp28-3, complete sequence	8246-8275	9	0.7
NZ_CP053841_1	1.1\|70936\|30\|NZ_CP053841\|PILER-CR,CRISPRCasFinder,CRT	70936-70965	30	NC_017233	Borreliella afzelii PKo plasmid lp28-3, complete sequence	15730-15759	9	0.7
NZ_CP053841_1	1.3\|71068\|30\|NZ_CP053841\|PILER-CR,CRISPRCasFinder,CRT	71068-71097	30	MN693518	Marine virus AFVG_25M99, complete genome	47589-47618	9	0.7

1. spacer 1.9|71336|23|NZ_CP053841|PILER-CR matches to NZ_CP016589 (Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-01, complete sequence) position: , mismatch: 2, identity: 0.913

taattgattaaatcttctaaagt	CRISPR spacer
taatcgattaaatcttctacagt	Protospacer
****.************** ***

2. spacer 1.8|71395|30|NZ_CP053841|CRISPRCasFinder,CRT matches to NZ_LR217736 (Candidatus Erwinia haradaeae strain ErCisplendens isolate 3004 plasmid pBioThi) position: , mismatch: 4, identity: 0.867

agatatttttttgttttttgtagattaata-	CRISPR spacer
agatatttgtttgtttttggtaga-aaatat	Protospacer
******** ********* *****  ****

3. spacer 1.8|71395|30|NZ_CP053841|CRISPRCasFinder,CRT matches to MK250023 (Prevotella phage Lak-B4, complete genome) position: , mismatch: 4, identity: 0.867

agatat-ttttttgttttttgtagattaata	CRISPR spacer
-aatatgttatttgttttttgtagataaata	Protospacer
 .**** ** **************** ****

4. spacer 1.8|71395|30|NZ_CP053841|CRISPRCasFinder,CRT matches to MK250027 (Prevotella phage Lak-B8, complete genome) position: , mismatch: 4, identity: 0.867

agatat-ttttttgttttttgtagattaata	CRISPR spacer
-aatatgttatttgttttttgtagataaata	Protospacer
 .**** ** **************** ****

5. spacer 1.8|71395|30|NZ_CP053841|CRISPRCasFinder,CRT matches to MK250026 (Prevotella phage Lak-B7, complete genome) position: , mismatch: 4, identity: 0.867

agatat-ttttttgttttttgtagattaata	CRISPR spacer
-aatatgttatttgttttttgtagataaata	Protospacer
 .**** ** **************** ****

6. spacer 1.10|71401|30|NZ_CP053841|PILER-CR matches to NZ_LR217736 (Candidatus Erwinia haradaeae strain ErCisplendens isolate 3004 plasmid pBioThi) position: , mismatch: 4, identity: 0.867

agatatttttttgttttttgtagattaata-	CRISPR spacer
agatatttgtttgtttttggtaga-aaatat	Protospacer
******** ********* *****  ****

7. spacer 1.10|71401|30|NZ_CP053841|PILER-CR matches to MK250023 (Prevotella phage Lak-B4, complete genome) position: , mismatch: 4, identity: 0.867

agatat-ttttttgttttttgtagattaata	CRISPR spacer
-aatatgttatttgttttttgtagataaata	Protospacer
 .**** ** **************** ****

8. spacer 1.10|71401|30|NZ_CP053841|PILER-CR matches to MK250027 (Prevotella phage Lak-B8, complete genome) position: , mismatch: 4, identity: 0.867

agatat-ttttttgttttttgtagattaata	CRISPR spacer
-aatatgttatttgttttttgtagataaata	Protospacer
 .**** ** **************** ****

9. spacer 1.10|71401|30|NZ_CP053841|PILER-CR matches to MK250026 (Prevotella phage Lak-B7, complete genome) position: , mismatch: 4, identity: 0.867

agatat-ttttttgttttttgtagattaata	CRISPR spacer
-aatatgttatttgttttttgtagataaata	Protospacer
 .**** ** **************** ****

10. spacer 1.8|71395|30|NZ_CP053841|CRISPRCasFinder,CRT matches to MH675552 (Bacteroides phage crAss001, complete genome) position: , mismatch: 5, identity: 0.833

agatatttttttgttttttgtagattaata	CRISPR spacer
actttttttttttttttttgtaaattaata	Protospacer
*  * ******* *********.*******

11. spacer 1.10|71401|30|NZ_CP053841|PILER-CR matches to MH675552 (Bacteroides phage crAss001, complete genome) position: , mismatch: 5, identity: 0.833

agatatttttttgttttttgtagattaata	CRISPR spacer
actttttttttttttttttgtaaattaata	Protospacer
*  * ******* *********.*******

12. spacer 1.7|71330|29|NZ_CP053841|CRISPRCasFinder,CRT matches to NZ_CP053316 (Bacillus circulans strain GN03 plasmid unnamed, complete sequence) position: , mismatch: 6, identity: 0.793

ttattgtaattgattaaatcttctaaagt	CRISPR spacer
atattctaattgataaaatcttctacttt	Protospacer
 **** ******** **********   *

13. spacer 1.8|71395|30|NZ_CP053841|CRISPRCasFinder,CRT matches to NZ_CP046076 (Enterococcus faecium strain VRE plasmid p5_03A17012, complete sequence) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

14. spacer 1.8|71395|30|NZ_CP053841|CRISPRCasFinder,CRT matches to NZ_AP019380 (Buchnera aphidicola (Nipponaphis monzeni) strain Nmo isolate Tokyo2014 plasmid pLeu, complete sequence) position: , mismatch: 6, identity: 0.8

----agatatttttttgttttttgtagattaata	CRISPR spacer
tttaaga----tttttgttttttgttgattagta	Protospacer
    ***    ************** *****.**

15. spacer 1.8|71395|30|NZ_CP053841|CRISPRCasFinder,CRT matches to NZ_CP019993 (Enterococcus faecium isolate 2014-VREF-268 plasmid p268-1, complete sequence) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

16. spacer 1.8|71395|30|NZ_CP053841|CRISPRCasFinder,CRT matches to NZ_CP033207 (Enterococcus faecium strain RBWH1 plasmid pRBWH1.1, complete sequence) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

17. spacer 1.8|71395|30|NZ_CP053841|CRISPRCasFinder,CRT matches to NZ_CP018129 (Enterococcus faecium strain A_020709_82 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

18. spacer 1.8|71395|30|NZ_CP053841|CRISPRCasFinder,CRT matches to LT603679 (Enterococcus faecium isolate Ef_DMG1500501 genome assembly, plasmid: 2) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

19. spacer 1.8|71395|30|NZ_CP053841|CRISPRCasFinder,CRT matches to NZ_CP041262 (Enterococcus faecium strain VVEswe-R plasmid pVVEswe-R1, complete sequence) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

20. spacer 1.8|71395|30|NZ_CP053841|CRISPRCasFinder,CRT matches to NZ_CP027498 (Enterococcus faecium strain AUSMDU00004167 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

21. spacer 1.8|71395|30|NZ_CP053841|CRISPRCasFinder,CRT matches to NZ_LR135333 (Enterococcus faecium isolate E7471 plasmid 3) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

22. spacer 1.8|71395|30|NZ_CP053841|CRISPRCasFinder,CRT matches to NZ_LR135244 (Enterococcus faecium isolate E6988 plasmid 2) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

23. spacer 1.8|71395|30|NZ_CP053841|CRISPRCasFinder,CRT matches to NZ_LR135294 (Enterococcus faecium isolate E7237 plasmid 2) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

24. spacer 1.8|71395|30|NZ_CP053841|CRISPRCasFinder,CRT matches to NZ_LR135255 (Enterococcus faecium isolate E7098 plasmid 2) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

25. spacer 1.8|71395|30|NZ_CP053841|CRISPRCasFinder,CRT matches to NZ_CP019209 (Enterococcus faecium strain 2014-VREF-41 plasmid p41-1, complete sequence) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

26. spacer 1.8|71395|30|NZ_CP053841|CRISPRCasFinder,CRT matches to NZ_CP019989 (Enterococcus faecium isolate 2014-VREF-63 plasmid p63-1, complete sequence) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

27. spacer 1.8|71395|30|NZ_CP053841|CRISPRCasFinder,CRT matches to NZ_LR135227 (Enterococcus faecium isolate E7025 plasmid 2) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

28. spacer 1.8|71395|30|NZ_CP053841|CRISPRCasFinder,CRT matches to NZ_LR135489 (Enterococcus faecium isolate E8414 plasmid 2) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

29. spacer 1.8|71395|30|NZ_CP053841|CRISPRCasFinder,CRT matches to NZ_LR135415 (Enterococcus faecium isolate E8328 plasmid 2) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

30. spacer 1.8|71395|30|NZ_CP053841|CRISPRCasFinder,CRT matches to NZ_LR135395 (Enterococcus faecium isolate E8290 plasmid 2) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

31. spacer 1.8|71395|30|NZ_CP053841|CRISPRCasFinder,CRT matches to NZ_LR135325 (Enterococcus faecium isolate E7654 plasmid 2) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

32. spacer 1.8|71395|30|NZ_CP053841|CRISPRCasFinder,CRT matches to NZ_LR135358 (Enterococcus faecium isolate E7948 plasmid 2) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

33. spacer 1.8|71395|30|NZ_CP053841|CRISPRCasFinder,CRT matches to NZ_LR135409 (Enterococcus faecium isolate E8284 plasmid 2) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

34. spacer 1.8|71395|30|NZ_CP053841|CRISPRCasFinder,CRT matches to NZ_LR135385 (Enterococcus faecium isolate E7933 plasmid 2) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

35. spacer 1.8|71395|30|NZ_CP053841|CRISPRCasFinder,CRT matches to NZ_CP044265 (Enterococcus faecium strain V1836 plasmid pHVH-V1836-1, complete sequence) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

36. spacer 1.8|71395|30|NZ_CP053841|CRISPRCasFinder,CRT matches to NZ_LR135318 (Enterococcus faecium isolate E7663 plasmid 2) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

37. spacer 1.8|71395|30|NZ_CP053841|CRISPRCasFinder,CRT matches to NZ_CP014530 (Enterococcus faecium strain E745 plasmid pl1, complete sequence) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

38. spacer 1.8|71395|30|NZ_CP053841|CRISPRCasFinder,CRT matches to NZ_CP023424 (Enterococcus faecium strain K60-39 plasmid pTT39_p1, complete sequence) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

39. spacer 1.8|71395|30|NZ_CP053841|CRISPRCasFinder,CRT matches to NC_017963 (Enterococcus faecium DO plasmid 3, complete sequence) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

40. spacer 1.8|71395|30|NZ_CP053841|CRISPRCasFinder,CRT matches to NZ_CP041271 (Enterococcus faecium strain VVEswe-S plasmid pVVEswe-S1, complete sequence) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

41. spacer 1.10|71401|30|NZ_CP053841|PILER-CR matches to NZ_CP046076 (Enterococcus faecium strain VRE plasmid p5_03A17012, complete sequence) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

42. spacer 1.10|71401|30|NZ_CP053841|PILER-CR matches to NZ_AP019380 (Buchnera aphidicola (Nipponaphis monzeni) strain Nmo isolate Tokyo2014 plasmid pLeu, complete sequence) position: , mismatch: 6, identity: 0.8

----agatatttttttgttttttgtagattaata	CRISPR spacer
tttaaga----tttttgttttttgttgattagta	Protospacer
    ***    ************** *****.**

43. spacer 1.10|71401|30|NZ_CP053841|PILER-CR matches to NZ_CP019993 (Enterococcus faecium isolate 2014-VREF-268 plasmid p268-1, complete sequence) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

44. spacer 1.10|71401|30|NZ_CP053841|PILER-CR matches to NZ_CP033207 (Enterococcus faecium strain RBWH1 plasmid pRBWH1.1, complete sequence) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

45. spacer 1.10|71401|30|NZ_CP053841|PILER-CR matches to NZ_CP018129 (Enterococcus faecium strain A_020709_82 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

46. spacer 1.10|71401|30|NZ_CP053841|PILER-CR matches to LT603679 (Enterococcus faecium isolate Ef_DMG1500501 genome assembly, plasmid: 2) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

47. spacer 1.10|71401|30|NZ_CP053841|PILER-CR matches to NZ_CP041262 (Enterococcus faecium strain VVEswe-R plasmid pVVEswe-R1, complete sequence) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

48. spacer 1.10|71401|30|NZ_CP053841|PILER-CR matches to NZ_CP027498 (Enterococcus faecium strain AUSMDU00004167 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

49. spacer 1.10|71401|30|NZ_CP053841|PILER-CR matches to NZ_LR135333 (Enterococcus faecium isolate E7471 plasmid 3) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

50. spacer 1.10|71401|30|NZ_CP053841|PILER-CR matches to NZ_LR135244 (Enterococcus faecium isolate E6988 plasmid 2) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

51. spacer 1.10|71401|30|NZ_CP053841|PILER-CR matches to NZ_LR135294 (Enterococcus faecium isolate E7237 plasmid 2) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

52. spacer 1.10|71401|30|NZ_CP053841|PILER-CR matches to NZ_LR135255 (Enterococcus faecium isolate E7098 plasmid 2) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

53. spacer 1.10|71401|30|NZ_CP053841|PILER-CR matches to NZ_CP019209 (Enterococcus faecium strain 2014-VREF-41 plasmid p41-1, complete sequence) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

54. spacer 1.10|71401|30|NZ_CP053841|PILER-CR matches to NZ_CP019989 (Enterococcus faecium isolate 2014-VREF-63 plasmid p63-1, complete sequence) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

55. spacer 1.10|71401|30|NZ_CP053841|PILER-CR matches to NZ_LR135227 (Enterococcus faecium isolate E7025 plasmid 2) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

56. spacer 1.10|71401|30|NZ_CP053841|PILER-CR matches to NZ_LR135489 (Enterococcus faecium isolate E8414 plasmid 2) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

57. spacer 1.10|71401|30|NZ_CP053841|PILER-CR matches to NZ_LR135415 (Enterococcus faecium isolate E8328 plasmid 2) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

58. spacer 1.10|71401|30|NZ_CP053841|PILER-CR matches to NZ_LR135395 (Enterococcus faecium isolate E8290 plasmid 2) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

59. spacer 1.10|71401|30|NZ_CP053841|PILER-CR matches to NZ_LR135325 (Enterococcus faecium isolate E7654 plasmid 2) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

60. spacer 1.10|71401|30|NZ_CP053841|PILER-CR matches to NZ_LR135358 (Enterococcus faecium isolate E7948 plasmid 2) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

61. spacer 1.10|71401|30|NZ_CP053841|PILER-CR matches to NZ_LR135409 (Enterococcus faecium isolate E8284 plasmid 2) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

62. spacer 1.10|71401|30|NZ_CP053841|PILER-CR matches to NZ_LR135385 (Enterococcus faecium isolate E7933 plasmid 2) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

63. spacer 1.10|71401|30|NZ_CP053841|PILER-CR matches to NZ_CP044265 (Enterococcus faecium strain V1836 plasmid pHVH-V1836-1, complete sequence) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

64. spacer 1.10|71401|30|NZ_CP053841|PILER-CR matches to NZ_LR135318 (Enterococcus faecium isolate E7663 plasmid 2) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

65. spacer 1.10|71401|30|NZ_CP053841|PILER-CR matches to NZ_CP014530 (Enterococcus faecium strain E745 plasmid pl1, complete sequence) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

66. spacer 1.10|71401|30|NZ_CP053841|PILER-CR matches to NZ_CP023424 (Enterococcus faecium strain K60-39 plasmid pTT39_p1, complete sequence) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

67. spacer 1.10|71401|30|NZ_CP053841|PILER-CR matches to NC_017963 (Enterococcus faecium DO plasmid 3, complete sequence) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

68. spacer 1.10|71401|30|NZ_CP053841|PILER-CR matches to NZ_CP041271 (Enterococcus faecium strain VVEswe-S plasmid pVVEswe-S1, complete sequence) position: , mismatch: 6, identity: 0.8

agatatttttttgttttttgtagattaata	CRISPR spacer
agaaattttttcgttttttgtaggtgcgta	Protospacer
*** *******.***********.*  .**

69. spacer 1.1|70936|30|NZ_CP053841|PILER-CR,CRISPRCasFinder,CRT matches to KR131710 (Fusobacterium phage Funu1, complete genome) position: , mismatch: 7, identity: 0.767

tttagaagatttgattaattacaataacga	CRISPR spacer
attagaagatttgaataattataattctaa	Protospacer
 ************* ******.***  ..*

70. spacer 1.7|71330|29|NZ_CP053841|CRISPRCasFinder,CRT matches to NZ_CP016589 (Bacillus thuringiensis strain KNU-07 plasmid pBTKNU07-01, complete sequence) position: , mismatch: 7, identity: 0.759

ttattgtaattgattaaatcttctaaagt	CRISPR spacer
tgcgcataatcgattaaatcttctacagt	Protospacer
*   ..****.************** ***

71. spacer 1.7|71330|29|NZ_CP053841|CRISPRCasFinder,CRT matches to NC_031056 (Bacillus phage Deep Blue, complete genome) position: , mismatch: 7, identity: 0.759

ttattgtaattgattaaatcttctaaagt	CRISPR spacer
gtattgtcattgattaaatcttttgcaac	Protospacer
 ****** **************.*. *..

72. spacer 1.8|71395|30|NZ_CP053841|CRISPRCasFinder,CRT matches to NZ_CP029459 (Clostridium novyi strain 150557 plasmid pCN1, complete sequence) position: , mismatch: 7, identity: 0.767

agatatttttttgttttttgtagattaata	CRISPR spacer
ggcgagttttttgttttttgtagaatattt	Protospacer
.*  * ****************** ** *

73. spacer 1.8|71395|30|NZ_CP053841|CRISPRCasFinder,CRT matches to NC_002120 (Yersinia enterocolitica W22703 plasmid pYVe227, complete sequence) position: , mismatch: 7, identity: 0.767

agatatttttttgttttttgtagattaata--	CRISPR spacer
ggatatttttttgtttttttt--atcaacggt	Protospacer
.****************** *  **.**..

74. spacer 1.8|71395|30|NZ_CP053841|CRISPRCasFinder,CRT matches to NZ_CP011287 (Yersinia enterocolitica strain KNG22703 plasmid, complete sequence) position: , mismatch: 7, identity: 0.767

agatatttttttgttttttgtagattaata--	CRISPR spacer
ggatatttttttgtttttttt--atcaacggt	Protospacer
.****************** *  **.**..

75. spacer 1.8|71395|30|NZ_CP053841|CRISPRCasFinder,CRT matches to NC_015475 (Yersinia enterocolitica subsp. palearctica 105.5R(r) plasmid 105.5R(r)p, complete sequence) position: , mismatch: 7, identity: 0.767

agatatttttttgttttttgtagattaata--	CRISPR spacer
ggatatttttttgtttttttt--atcaacggt	Protospacer
.****************** *  **.**..

76. spacer 1.8|71395|30|NZ_CP053841|CRISPRCasFinder,CRT matches to NZ_CP030981 (Yersinia enterocolitica subsp. palearctica strain Y1 plasmid pYV, complete sequence) position: , mismatch: 7, identity: 0.767

agatatttttttgttttttgtagattaata--	CRISPR spacer
ggatatttttttgtttttttt--atcaacggt	Protospacer
.****************** *  **.**..

77. spacer 1.8|71395|30|NZ_CP053841|CRISPRCasFinder,CRT matches to NZ_CP046059 (Microcystis aeruginosa NIES-298 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

agatatttttttgttttttgtagattaata	CRISPR spacer
atctattttcttgttttttgtagctttttt	Protospacer
*  ******.************* **  *

78. spacer 1.8|71395|30|NZ_CP053841|CRISPRCasFinder,CRT matches to NC_017565 (Yersinia enterocolitica subsp. palearctica Y11 plasmid pYV03, complete sequence) position: , mismatch: 7, identity: 0.767

agatatttttttgttttttgtagattaata--	CRISPR spacer
ggatatttttttgtttttttt--atcaacggt	Protospacer
.****************** *  **.**..

79. spacer 1.8|71395|30|NZ_CP053841|CRISPRCasFinder,CRT matches to NZ_CP009837 (Yersinia enterocolitica strain 2516-87 plasmid pCD, complete sequence) position: , mismatch: 7, identity: 0.767

agatatttttttgttttttgtagattaata--	CRISPR spacer
ggatatttttttgtttttttt--atcaacggt	Protospacer
.****************** *  **.**..

80. spacer 1.8|71395|30|NZ_CP053841|CRISPRCasFinder,CRT matches to LC425520 (Uncultured phage DNA, contig: NODE385) position: , mismatch: 7, identity: 0.767

agatatttttttgttttttgtagattaata	CRISPR spacer
atctattttcttgttttttgtagctttttt	Protospacer
*  ******.************* **  *

81. spacer 1.10|71401|30|NZ_CP053841|PILER-CR matches to NZ_CP029459 (Clostridium novyi strain 150557 plasmid pCN1, complete sequence) position: , mismatch: 7, identity: 0.767

agatatttttttgttttttgtagattaata	CRISPR spacer
ggcgagttttttgttttttgtagaatattt	Protospacer
.*  * ****************** ** *

82. spacer 1.10|71401|30|NZ_CP053841|PILER-CR matches to NC_002120 (Yersinia enterocolitica W22703 plasmid pYVe227, complete sequence) position: , mismatch: 7, identity: 0.767

agatatttttttgttttttgtagattaata--	CRISPR spacer
ggatatttttttgtttttttt--atcaacggt	Protospacer
.****************** *  **.**..

83. spacer 1.10|71401|30|NZ_CP053841|PILER-CR matches to NZ_CP011287 (Yersinia enterocolitica strain KNG22703 plasmid, complete sequence) position: , mismatch: 7, identity: 0.767

agatatttttttgttttttgtagattaata--	CRISPR spacer
ggatatttttttgtttttttt--atcaacggt	Protospacer
.****************** *  **.**..

84. spacer 1.10|71401|30|NZ_CP053841|PILER-CR matches to NC_015475 (Yersinia enterocolitica subsp. palearctica 105.5R(r) plasmid 105.5R(r)p, complete sequence) position: , mismatch: 7, identity: 0.767

agatatttttttgttttttgtagattaata--	CRISPR spacer
ggatatttttttgtttttttt--atcaacggt	Protospacer
.****************** *  **.**..

85. spacer 1.10|71401|30|NZ_CP053841|PILER-CR matches to NZ_CP030981 (Yersinia enterocolitica subsp. palearctica strain Y1 plasmid pYV, complete sequence) position: , mismatch: 7, identity: 0.767

agatatttttttgttttttgtagattaata--	CRISPR spacer
ggatatttttttgtttttttt--atcaacggt	Protospacer
.****************** *  **.**..

86. spacer 1.10|71401|30|NZ_CP053841|PILER-CR matches to NZ_CP046059 (Microcystis aeruginosa NIES-298 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

agatatttttttgttttttgtagattaata	CRISPR spacer
atctattttcttgttttttgtagctttttt	Protospacer
*  ******.************* **  *

87. spacer 1.10|71401|30|NZ_CP053841|PILER-CR matches to NC_017565 (Yersinia enterocolitica subsp. palearctica Y11 plasmid pYV03, complete sequence) position: , mismatch: 7, identity: 0.767

agatatttttttgttttttgtagattaata--	CRISPR spacer
ggatatttttttgtttttttt--atcaacggt	Protospacer
.****************** *  **.**..

88. spacer 1.10|71401|30|NZ_CP053841|PILER-CR matches to NZ_CP009837 (Yersinia enterocolitica strain 2516-87 plasmid pCD, complete sequence) position: , mismatch: 7, identity: 0.767

agatatttttttgttttttgtagattaata--	CRISPR spacer
ggatatttttttgtttttttt--atcaacggt	Protospacer
.****************** *  **.**..

89. spacer 1.10|71401|30|NZ_CP053841|PILER-CR matches to LC425520 (Uncultured phage DNA, contig: NODE385) position: , mismatch: 7, identity: 0.767

agatatttttttgttttttgtagattaata	CRISPR spacer
atctattttcttgttttttgtagctttttt	Protospacer
*  ******.************* **  *

90. spacer 1.3|71068|30|NZ_CP053841|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039048 (Piscirickettsia salmonis strain Psal-073 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

taaatgttgaaaaacattatcctaccctgt	CRISPR spacer
aaaatgttcaaaaacattatcccagtattc	Protospacer
 ******* *************.* . * .

91. spacer 1.3|71068|30|NZ_CP053841|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038900 (Piscirickettsia salmonis strain Psal-006b plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

taaatgttgaaaaacattatcctaccctgt	CRISPR spacer
aaaatgttcaaaaacattatcccagtattc	Protospacer
 ******* *************.* . * .

92. spacer 1.5|71200|30|NZ_CP053841|CRISPRCasFinder,CRT matches to NZ_CP010270 (Paenibacillus polymyxa strain Sb3-1 plasmid pSb31l, complete sequence) position: , mismatch: 8, identity: 0.733

tctaagaataatctttctaacgaatagtga	CRISPR spacer
tctaagaataatctatctaacgtcctaaaa	Protospacer
************** *******  . . .*

93. spacer 1.8|71395|30|NZ_CP053841|CRISPRCasFinder,CRT matches to NZ_KT897275 (Clostridium botulinum strain IFR 12/29 plasmid p12/29, complete sequence) position: , mismatch: 8, identity: 0.733

agatatttttttgttttttgtagattaata	CRISPR spacer
ttgagcttttttgttttttttagattatta	Protospacer
  . ..************* ******* **

94. spacer 1.8|71395|30|NZ_CP053841|CRISPRCasFinder,CRT matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 8, identity: 0.733

agatatttttttgttttttgtagattaata	CRISPR spacer
taacatttttttattttttgtagatatttt	Protospacer
 .*.********.************   *

95. spacer 1.8|71395|30|NZ_CP053841|CRISPRCasFinder,CRT matches to NZ_CP034477 (Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_3, complete sequence) position: , mismatch: 8, identity: 0.733

agatatttttttgttttttgtagattaata	CRISPR spacer
ttatatttttcagttttttgtagatcagat	Protospacer
  ********. *************.*.

96. spacer 1.8|71395|30|NZ_CP053841|CRISPRCasFinder,CRT matches to NC_010181 (Bacillus mycoides KBAB4 plasmid pBWB402, complete sequence) position: , mismatch: 8, identity: 0.733

agatatttttttgttttttgtagattaata	CRISPR spacer
taaaatttttttattttttgtagatatttt	Protospacer
 .* ********.************   *

97. spacer 1.8|71395|30|NZ_CP053841|CRISPRCasFinder,CRT matches to NZ_CP034472 (Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_3, complete sequence) position: , mismatch: 8, identity: 0.733

agatatttttttgttttttgtagattaata	CRISPR spacer
ttatatttttcagttttttgtagatcagat	Protospacer
  ********. *************.*.

98. spacer 1.8|71395|30|NZ_CP053841|CRISPRCasFinder,CRT matches to NC_023026 (Francisella novicida strain PA10-7858 plasmid pFNPA10, complete sequence) position: , mismatch: 8, identity: 0.733

agatatttttttgttttttgtagattaata	CRISPR spacer
tcttctttttttgtttttggtggattaaac	Protospacer
   * ************* **.******

99. spacer 1.10|71401|30|NZ_CP053841|PILER-CR matches to NZ_KT897275 (Clostridium botulinum strain IFR 12/29 plasmid p12/29, complete sequence) position: , mismatch: 8, identity: 0.733

agatatttttttgttttttgtagattaata	CRISPR spacer
ttgagcttttttgttttttttagattatta	Protospacer
  . ..************* ******* **

100. spacer 1.10|71401|30|NZ_CP053841|PILER-CR matches to NZ_CP031069 (Bacillus sp. JAS24-2 plasmid pl626, complete sequence) position: , mismatch: 8, identity: 0.733

agatatttttttgttttttgtagattaata	CRISPR spacer
taacatttttttattttttgtagatatttt	Protospacer
 .*.********.************   *

101. spacer 1.10|71401|30|NZ_CP053841|PILER-CR matches to NZ_CP034477 (Pantoea agglomerans strain CFSAN047154 plasmid pCFSAN047154_3, complete sequence) position: , mismatch: 8, identity: 0.733

agatatttttttgttttttgtagattaata	CRISPR spacer
ttatatttttcagttttttgtagatcagat	Protospacer
  ********. *************.*.

102. spacer 1.10|71401|30|NZ_CP053841|PILER-CR matches to NC_010181 (Bacillus mycoides KBAB4 plasmid pBWB402, complete sequence) position: , mismatch: 8, identity: 0.733

agatatttttttgttttttgtagattaata	CRISPR spacer
taaaatttttttattttttgtagatatttt	Protospacer
 .* ********.************   *

103. spacer 1.10|71401|30|NZ_CP053841|PILER-CR matches to NZ_CP034472 (Pantoea agglomerans strain CFSAN047153 plasmid pCFSAN047153_3, complete sequence) position: , mismatch: 8, identity: 0.733

agatatttttttgttttttgtagattaata	CRISPR spacer
ttatatttttcagttttttgtagatcagat	Protospacer
  ********. *************.*.

104. spacer 1.10|71401|30|NZ_CP053841|PILER-CR matches to NC_023026 (Francisella novicida strain PA10-7858 plasmid pFNPA10, complete sequence) position: , mismatch: 8, identity: 0.733

agatatttttttgttttttgtagattaata	CRISPR spacer
tcttctttttttgtttttggtggattaaac	Protospacer
   * ************* **.******

105. spacer 1.1|70936|30|NZ_CP053841|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009064 (Borreliella afzelii K78 plasmid lp28-3, complete sequence) position: , mismatch: 9, identity: 0.7

tttagaagatttgattaattacaataacga	CRISPR spacer
agatgaagaattgataaattacaataaact	Protospacer
    ***** ***** ***********

106. spacer 1.1|70936|30|NZ_CP053841|PILER-CR,CRISPRCasFinder,CRT matches to NC_017233 (Borreliella afzelii PKo plasmid lp28-3, complete sequence) position: , mismatch: 9, identity: 0.7

tttagaagatttgattaattacaataacga	CRISPR spacer
agatgaagaattgataaattacaataaact	Protospacer
    ***** ***** ***********

107. spacer 1.3|71068|30|NZ_CP053841|PILER-CR,CRISPRCasFinder,CRT matches to MN693518 (Marine virus AFVG_25M99, complete genome) position: , mismatch: 9, identity: 0.7

taaatgttgaaaaacattatcctaccctgt	CRISPR spacer
taattgttgaaaaacattatctgctttttc	Protospacer
*** *****************.  ...* .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

126706 : 132955

Paramecium_bursaria_Chlorella_virus(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_106870707.1\|126706_127480_+	ABC transporter ATP-binding protein	M1H3A1	Paramecium_bursaria_Chlorella_virus	7.8e-11	29.8
WP_106870709.1\|127509_128502_-	iron-sulfur cluster assembly scaffold protein	A0A2H4N7M4	Lake_Baikal_phage	7.2e-17	42.9
WP_106870711.1\|128521_129715_-	cysteine desulfurase, NifS family	Q2XUY6	environmental_halophage	4.0e-30	27.4
WP_106870713.1\|129830_130409_-	GTP cyclohydrolase I FolE	A0A0P0HSD2	Acinetobacter_phage	9.3e-49	54.3
WP_106870715.1\|130541_131852_+	trigger factor	NA	NA	NA	NA
WP_106870717.1\|131852_132443_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	2.3e-55	56.1
WP_106870719.1\|132442_132955_+	peptide deformylase	E3SLL2	Synechococcus_phage	7.5e-18	44.4

DBSCAN-SWA_2

846672 : 964728

119

Campylobacter_phage(14.71%)

transposase,integrase,capsid,tail,terminase,protease,tRNA,plate

attL 853352:853372|attR 951449:951469

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_106870547.1\|846672_848055_-\|tRNA	cysteine--tRNA ligase	A0A1V0SAQ2	Catovirus	2.3e-53	31.6
WP_106870642.1\|848041_849457_-	murein biosynthesis integral membrane protein MurJ	NA	NA	NA	NA
WP_106870549.1\|849556_850111_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_106870551.1\|850120_851146_+	D-alanine--D-alanine ligase	NA	NA	NA	NA
WP_106870552.1\|851201_851429_+	type II toxin-antitoxin system prevent-host-death family antitoxin	NA	NA	NA	NA
WP_106870554.1\|851418_852816_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_106870556.1\|852819_854256_+	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA
853352:853372	attL	NA	NA	NA	NA
WP_106870560.1\|854593_856108_+	disulfide bond formation protein B	NA	NA	NA	NA
WP_106870562.1\|856134_857664_-	AarF/ABC1/UbiB kinase family protein	A0A2N9QVT9	Dishui_lake_phycodnavirus	6.1e-39	25.4
WP_106870564.1\|857644_857920_-	hypothetical protein	NA	NA	NA	NA
WP_106870566.1\|857919_859119_-	acetate kinase	NA	NA	NA	NA
WP_106870643.1\|859121_860612_-	phosphate acetyltransferase	NA	NA	NA	NA
WP_106870568.1\|860637_862236_-	malonate decarboxylase subunit alpha	NA	NA	NA	NA
WP_106870570.1\|862462_864151_+	acetolactate synthase large subunit	E5EQ70	Micromonas_sp._RCC1109_virus	5.4e-57	31.5
WP_106870572.1\|864161_864635_+	acetolactate synthase small subunit	NA	NA	NA	NA
WP_106870574.1\|864652_865606_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_106870576.1\|865729_866968_+	DUF2157 domain-containing protein	NA	NA	NA	NA
WP_157940012.1\|866970_867447_+	GDYXXLXY domain-containing protein	NA	NA	NA	NA
WP_172658181.1\|867551_868160_-	DedA family protein	NA	NA	NA	NA
WP_106870580.1\|868695_869343_-	LexA family transcriptional regulator	Q8HAA0	Salmonella_phage	1.6e-12	31.0
WP_106870582.1\|869493_869685_+	hypothetical protein	NA	NA	NA	NA
WP_133169609.1\|869681_871757_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	R9U1A8	Rhizobium_phage	4.1e-06	24.0
WP_106870586.1\|871818_872727_+	AAA family ATPase	F6MII7	Haemophilus_phage	1.6e-31	32.6
WP_106870588.1\|872737_872917_+	hypothetical protein	NA	NA	NA	NA
WP_106870590.1\|872913_873126_+	hypothetical protein	NA	NA	NA	NA
WP_106870592.1\|873128_873515_+	hypothetical protein	A0A0E3Y4X1	Fusobacterium_phage	7.1e-13	43.3
WP_157940013.1\|873590_873761_+	hypothetical protein	NA	NA	NA	NA
WP_106870594.1\|873757_874102_+	hypothetical protein	NA	NA	NA	NA
WP_106870596.1\|874273_874765_+	host-nuclease inhibitor Gam family protein	A0A2K9VGT9	Faecalibacterium_phage	2.6e-12	28.8
WP_106870598.1\|874761_874920_+	hypothetical protein	NA	NA	NA	NA
WP_133169610.1\|875138_875555_+	hypothetical protein	NA	NA	NA	NA
WP_106870602.1\|875544_875871_+	DUF4406 domain-containing protein	A0A1I9KFD3	Aeromonas_phage	1.6e-18	50.6
WP_157940014.1\|875858_876008_+	hypothetical protein	NA	NA	NA	NA
WP_106870604.1\|876004_876460_+	DUF1018 domain-containing protein	NA	NA	NA	NA
WP_106870606.1\|876469_876733_+	DNA-binding protein	NA	NA	NA	NA
WP_106870608.1\|876796_877237_+	hypothetical protein	NA	NA	NA	NA
WP_106870610.1\|877238_877424_+	hypothetical protein	NA	NA	NA	NA
WP_106870612.1\|877413_877962_+	hypothetical protein	NA	NA	NA	NA
WP_106870614.1\|877970_878204_+	transcriptional regulator	X2KXC5	Campylobacter_phage	2.3e-14	55.7
WP_106870616.1\|878587_879280_+	Rha family transcriptional regulator	X2KM03	Campylobacter_phage	7.5e-29	45.0
WP_106872952.1\|879276_879471_+	hypothetical protein	NA	NA	NA	NA
WP_106872954.1\|879614_880103_-	phage virion morphogenesis protein	NA	NA	NA	NA
WP_172658182.1\|880235_881495_-\|capsid	minor capsid protein	A0A0M4UTA3	Ralstonia_phage	1.2e-29	34.0
WP_106872533.1\|881484_882870_-	DUF935 family protein	A0A2H4JHL1	uncultured_Caudovirales_phage	3.2e-15	27.2
WP_106872535.1\|882838_884503_-\|terminase	phage terminase large subunit	A0A076FR23	Pseudomonas_phage	1.2e-96	41.7
WP_106872537.1\|884933_885413_-	DUF1804 family protein	NA	NA	NA	NA
WP_106872539.1\|885405_885804_-	DUF1320 family protein	NA	NA	NA	NA
WP_106872541.1\|885927_886923_-\|capsid	major capsid protein	NA	NA	NA	NA
WP_106872543.1\|886926_887259_-	hypothetical protein	NA	NA	NA	NA
WP_106872545.1\|887270_888083_-	hypothetical protein	H7BVL7	unidentified_phage	5.7e-20	34.4
WP_172658183.1\|889307_889721_+	hypothetical protein	I7II79	Campylobacter_virus	1.0e-09	33.3
WP_106872549.1\|889686_890037_+	hypothetical protein	NA	NA	NA	NA
WP_106872552.1\|890033_890909_+	DNA methyltransferase	F6MIM2	Haemophilus_phage	2.0e-39	35.7
WP_106872554.1\|890912_891134_+	hypothetical protein	A0A1S5RFZ3	Helicobacter_phage	7.4e-07	43.5
WP_106872556.1\|891130_891328_+	hypothetical protein	NA	NA	NA	NA
WP_106872558.1\|891317_891605_+	hypothetical protein	NA	NA	NA	NA
WP_106872560.1\|892098_892554_+\|plate	phage baseplate assembly protein V	NA	NA	NA	NA
WP_106872562.1\|892789_893077_+	GPW/gp25 family protein	A0A088FV58	Escherichia_phage	8.7e-08	38.2
WP_106872564.1\|893069_894161_+\|plate	baseplate J/gp47 family protein	V5YTH6	Pseudomonas_phage	5.1e-24	28.1
WP_106872566.1\|894157_895006_+\|tail	phage tail protein I	A0A2K9V471	Faecalibacterium_phage	7.3e-10	33.1
WP_106872568.1\|895016_895877_+\|tail	phage tail protein	V5YST5	Pseudomonas_phage	2.4e-29	41.9
WP_106872571.1\|895887_896262_+	hypothetical protein	NA	NA	NA	NA
WP_157940037.1\|896254_898018_+	SPASM domain-containing protein	NA	NA	NA	NA
WP_106872575.1\|898020_899196_+	hypothetical protein	NA	NA	NA	NA
WP_106872578.1\|899301_900435_+\|tail	phage tail sheath subtilisin-like domain-containing protein	A7YGY2	Campylobacter_phage	6.6e-83	47.3
WP_106872580.1\|900642_901149_+\|tail	phage major tail tube protein	NA	NA	NA	NA
WP_106872581.1\|901297_901531_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_106872583.1\|901652_901856_+	hypothetical protein	NA	NA	NA	NA
WP_106872585.1\|901969_904159_+\|tail	phage tail tape measure protein	A7YG87	Campylobacter_phage	6.1e-101	39.8
WP_106872587.1\|904160_904535_+\|tail	phage tail protein	NA	NA	NA	NA
WP_106872589.1\|904524_904716_+\|tail	tail protein X	NA	NA	NA	NA
WP_106872591.1\|904709_905681_+\|tail	phage tail protein	NA	NA	NA	NA
WP_106872593.1\|905844_906540_+	DNA adenine methylase	A7YG95	Campylobacter_phage	2.4e-83	66.1
WP_106872596.1\|907833_908607_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_106872598.1\|908898_909732_-	ABC transporter permease	NA	NA	NA	NA
WP_106872600.1\|909713_910673_-	methionine ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.4e-33	39.6
WP_106872602.1\|910669_913309_-\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	8.3e-153	41.0
WP_106872604.1\|913454_918590_-	hypothetical protein	NA	NA	NA	NA
WP_106872606.1\|918651_920832_-	penicillin-binding protein 1C	NA	NA	NA	NA
WP_106872608.1\|920899_922924_+	ATP-dependent helicase	A7KV33	Bacillus_phage	8.0e-47	27.2
WP_162296624.1\|923312_924875_-	WG repeat-containing protein	NA	NA	NA	NA
WP_106872610.1\|925341_926157_-	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_106872612.1\|926615_928007_+	class II fumarate hydratase	NA	NA	NA	NA
WP_106872614.1\|928062_928242_+	hypothetical protein	NA	NA	NA	NA
WP_157940038.1\|928442_928601_+	hypothetical protein	NA	NA	NA	NA
WP_106872616.1\|928650_929073_+	rhodanese-like domain-containing protein	NA	NA	NA	NA
WP_106872618.1\|929062_929404_+	rhodanese-like domain-containing protein	NA	NA	NA	NA
WP_106872620.1\|929472_930234_+	hypothetical protein	NA	NA	NA	NA
WP_106872622.1\|930286_932125_-	molecular chaperone HtpG	A0A1B1ISV4	uncultured_Mediterranean_phage	3.2e-95	35.2
WP_172658184.1\|932266_933523_-	hypothetical protein	NA	NA	NA	NA
WP_106872624.1\|933519_934182_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA
WP_106872626.1\|934178_934415_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_106872628.1\|934426_935146_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3F9V5	Synechococcus_phage	3.7e-39	39.0
WP_106872630.1\|935142_936489_-	S41 family peptidase	A0A0R6PIZ1	Moraxella_phage	1.7e-21	26.6
WP_106872632.1\|936664_939241_+	AAA family ATPase	K4FB40	Cronobacter_phage	1.7e-110	34.4
WP_106872634.1\|939400_940558_+	hydrogenase small subunit	NA	NA	NA	NA
WP_106872636.1\|940554_942273_+	nickel-dependent hydrogenase large subunit	NA	NA	NA	NA
WP_106872638.1\|942284_942962_+	Ni/Fe-hydrogenase, b-type cytochrome subunit	NA	NA	NA	NA
WP_106872640.1\|942966_943512_+	HyaD/HybD family hydrogenase maturation endopeptidase	NA	NA	NA	NA
WP_106872642.1\|943501_945040_+	hypothetical protein	NA	NA	NA	NA
WP_106872644.1\|945039_947256_+	carbamoyltransferase HypF	NA	NA	NA	NA
WP_106872646.1\|947267_947996_+	hydrogenase nickel incorporation protein HypB	NA	NA	NA	NA
WP_106872648.1\|947995_948292_+	HypC/HybG/HupF family hydrogenase formation chaperone	NA	NA	NA	NA
WP_106872650.1\|948278_949370_+	hydrogenase formation protein HypD	NA	NA	NA	NA
WP_106872652.1\|949366_950356_+	hydrogenase expression/formation protein HypE	NA	NA	NA	NA
WP_106872654.1\|950355_950697_+	hydrogenase maturation nickel metallochaperone HypA	NA	NA	NA	NA
WP_106872656.1\|950749_951406_-	hypothetical protein	NA	NA	NA	NA
WP_106872658.1\|951530_952724_-	hypothetical protein	NA	NA	NA	NA
951449:951469	attR	NA	NA	NA	NA
WP_106872702.1\|952738_954022_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_106872660.1\|954575_955967_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_106872663.1\|957157_957649_-	histidine phosphatase family protein	NA	NA	NA	NA
WP_106872665.1\|957656_958448_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_106872667.1\|958447_958987_-\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_157940039.1\|959037_959691_-	CHAP domain-containing protein	NA	NA	NA	NA
WP_106872672.1\|959835_961101_+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_106905679.1\|961097_962273_+	molybdopterin molybdotransferase MoeA	NA	NA	NA	NA
WP_106872674.1\|962445_962943_+	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	2.8e-25	40.2
WP_106872676.1\|962926_963502_+	dTMP kinase	A0A1L2BX49	Bacteriophage	3.8e-10	32.1
WP_106872679.1\|963498_964728_+\|tRNA	histidine--tRNA ligase	NA	NA	NA	NA

DBSCAN-SWA_3

1121692 : 1131113

Vibrio_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_106872049.1\|1121692_1123894_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	6.1e-149	40.3
WP_172658188.1\|1124102_1126037_+	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	6.7e-19	24.1
WP_106871769.1\|1126180_1128115_+	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	8.0e-20	27.4
WP_106871771.1\|1128156_1128723_-	D-sedoheptulose 7-phosphate isomerase	A0A067XQR2	Caulobacter_phage	1.3e-18	30.9
WP_106871773.1\|1128706_1130131_-	D-glycero-beta-D-manno-heptose-7-phosphate kinase	M4QSA2	Synechococcus_phage	5.7e-23	45.2
WP_106871775.1\|1130123_1131113_-	ADP-glyceromanno-heptose 6-epimerase	M4QHP0	Synechococcus_phage	1.1e-20	30.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP053841

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection