CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number
NZ_CP053846	Campylobacter sp. CCUG 57310 plasmid pCORI-1, complete sequence	0 crisprs	NA	0
NZ_CP053845	Campylobacter sp. CCUG 57310 chromosome, complete genome	4 crisprs	cas1,cas6,cas10,csm2gr11,csm3gr7,csm4gr5,csm5gr7,DEDDh,WYL,csx20,csx1,csx19,csx10gr5,cas2,csa3	0
NZ_CP053847	Campylobacter sp. CCUG 57310 plasmid pCORI-2, complete sequence	1 crisprs	NA	2

Cas Category Instructions

Results visualization

1. NZ_CP053845

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP053845_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053845_1

349316-349579

TypeIII

Consensus_repeat	Method
GTTTCAATCCCCTAGATCGGGTCAAATTTGTTCAAAT	CRISPRCasFinder
GTTTCAATCCCCTAGATCGGGTCAAATTTGTTCAAAT	PILER-CR

3 spacers

cas2,cas1,cas6,cas10,csm2gr11

The CRISPR arrays of NZ_CP053845_1

>merge|NZ_CP053845|1|349316-349579|CRISPRCasFinder,PILER-CR
TTCTTAATCCCCTAGAGCGGGTCAAATTTGTTCAAATTTCATCTGACACAGATATAAAGAAACTTCAGAACCTTAAGTTTCAATCCCCTAGAGCGGGTCAAATTTGTTCAAATTTAATGAAGAGGAGGATATCGAGTTCGATATCTAACCGTTTCAATCCCCTAGATCGGGTCAAATTTGTTCAAATGGCTTGTTAAACAAGCAGGTTCAACAACCTGCTATATGAAGTTTCAATCCCCTAGATCGGGTCAAATTTGTTCAAAT

>NZ_CP053845|1|1|349316-349579|CRISPRCasFinder
TTCTTAATCCCCTAGAGCGGGTCAAATTTGTTCAAAT	TTCATCTGACACAGATATAAAGAAACTTCAGAACCTTAA
GTTTCAATCCCCTAGAGCGGGTCAAATTTGTTCAAAT	TTAATGAAGAGGAGGATATCGAGTTCGATATCTAACC
GTTTCAATCCCCTAGATCGGGTCAAATTTGTTCAAAT	GGCTTGTTAAACAAGCAGGTTCAACAACCTGCTATATGAA
GTTTCAATCCCCTAGATCGGGTCAAATTTGTTCAAAT

>NZ_CP053845|1|1|349392-349579|PILER-CR
GTTTCAATCCCCTAGAGCGGGTCAAATTTGTTCAAAT	TTAATGAAGAGGAGGATATCGAGTTCGATATCTAACC
GTTTCAATCCCCTAGATCGGGTCAAATTTGTTCAAAT	GGCTTGTTAAACAAGCAGGTTCAACAACCTGCTATATGAA
GTTTCAATCCCCTAGATCGGGTCAAATTTGTTCAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053845.1\|WP_173030563.1\|350025_350301_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP053845.1\|WP_173030553.1\|336546_336954_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226310
NZ_CP053845.1\|WP_173030570.1\|358640_359657_-\|IS1595-family-transposase	unknown	unknown	gnl\|CDD\|226202
NZ_CP053845.1\|WP_173030572.1\|360901_361306_+\|type-III-A-CRISPR-associated-protein-Csm2	csm2gr11	pfam03750_csm2gr11_CAS-III-A	gnl\|CDD\|367635
NZ_CP053845.1\|WP_173030554.1\|337113_339174_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP053845.1\|WP_173030568.1\|354634_355984_-\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|341135
NZ_CP053845.1\|WP_173030556.1\|341187_342771_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|373095
NZ_CP053845.1\|WP_173030557.1\|343366_344548_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|224292
NZ_CP053845.1\|WP_173030560.1\|346512_346719_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378935
NZ_CP053845.1\|WP_173030558.1\|344556_345693_+\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271182
NZ_CP053845.1\|WP_173030569.1\|355986_358620_-\|N-6-DNA-methylase	unknown	unknown	gnl\|CDD\|280533
NZ_CP053845.1\|WP_173030555.1\|339964_341164_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379049
NZ_CP053845.1\|WP_173030564.1\|350300_352535_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|275209
NZ_CP053845.1\|WP_173030566.1\|353341_354178_+\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	mkCas0066_cas6_CAS-I:CAS-III	gnl\|CDD\|187890
NZ_CP053845.1\|WP_173030571.1\|359705_360905_+\|hypothetical-protein	cas10	cd09680_cas10_CAS-III	gnl\|CDD\|187811
NZ_CP053845.1\|WP_173030561.1\|346715_347351_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053845.1\|WP_173030562.1\|347369_349043_+\|relaxase/mobilization-nuclease-domain-containing-protein	unknown	unknown	gnl\|CDD\|367497
NZ_CP053845.1\|WP_173030565.1\|353139_353361_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053845.1\|WP_173030567.1\|354164_354554_+\|hypothetical-protein	cas10	cd09680_cas10_CAS-III	gnl\|CDD\|187811
NZ_CP053845.1\|WP_173030559.1\|345699_346419_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP053845.1\|WP_173030553.1\|336546_336954_+\|hypothetical-protein	gnl\|CDD\|226310	COG3787, COG3787, Uncharacterized protein conserved in bacteria [Function unknown].	4.33983e-50
NZ_CP053845.1\|WP_173030563.1\|350025_350301_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.46179e-23
NZ_CP053845.1\|WP_173030570.1\|358640_359657_-\|IS1595-family-transposase	gnl\|CDD\|226202	COG3677, COG3677, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	4.81929e-14
NZ_CP053845.1\|WP_173030572.1\|360901_361306_+\|type-III-A-CRISPR-associated-protein-Csm2	gnl\|CDD\|367635	pfam03750, Csm2_III-A, Csm2 Type III-A. Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-associated) proteins. This entry represents Csm2 Type III-A, a family of Cas proteins also known as TM1810/Csm2.	4.81642e-17
NZ_CP053845.1\|WP_173030557.1\|343366_344548_+\|ATP-binding-protein	gnl\|CDD\|224292	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only].	2.85705e-26
NZ_CP053845.1\|WP_173030568.1\|354634_355984_-\|restriction-endonuclease-subunit-S	gnl\|CDD\|341135	cd17246, RMtype1_S_SonII-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Shewanella oneidensis MR-1 S subunit (S.SonII) TRD2-CR2. This model contains Shewanella oneidensis MR-1 S subunit (S.SonII) TRD2-CR2 and similar TRD-CR's. S.SonII recognizes 5'... GTCANNNNNNRTCA ... 3'. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases. S.SonII TRD1-CR1 does not belong to this subfamily.	3.471e-18
NZ_CP053845.1\|WP_173030556.1\|341187_342771_+\|AAA-family-ATPase	gnl\|CDD\|373095	pfam14491, DUF4435, Protein of unknown function (DUF4435). This presumed domain is functionally uncharacterized. This domain is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 285 and 362 amino acids in length. This domain is sometimes associated with AAA domains.	6.09249e-07
NZ_CP053845.1\|WP_173030560.1\|346512_346719_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	2.37518e-08
NZ_CP053845.1\|WP_173030566.1\|353341_354178_+\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	gnl\|CDD\|187890	cd09760, Cas6_III, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex.	6.89138e-09
NZ_CP053845.1\|WP_173030569.1\|355986_358620_-\|N-6-DNA-methylase	gnl\|CDD\|280533	pfam02384, N6_Mtase, N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.	8.57372e-26
NZ_CP053845.1\|WP_173030555.1\|339964_341164_+\|ATP-binding-protein	gnl\|CDD\|379049	pfam13173, AAA_14, AAA domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily.	7.52239e-30
NZ_CP053845.1\|WP_173030564.1\|350300_352535_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	3.1824e-77
NZ_CP053845.1\|WP_173030558.1\|344556_345693_+\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271182	cd00801, INT_P4_C, Bacteriophage P4 integrase, C-terminal catalytic domain. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. The P4 integrase mediates integrative and excisive site-specific recombination between two sites, called attachment sites, located on the phage genome and the bacterial chromosome. The phage attachment site is often found adjacent to the integrase gene, while the host attachment sites are typically situated near tRNA genes. This family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.14345e-14
NZ_CP053845.1\|WP_173030562.1\|347369_349043_+\|relaxase/mobilization-nuclease-domain-containing-protein	gnl\|CDD\|367497	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain. Relaxases/mobilisation proteins are required for the horizontal transfer of genetic information contained on plasmids that occurs during bacterial conjugation. The relaxase, in conjunction with several auxiliary proteins, forms the relaxation complex or relaxosome. Relaxases nick duplex DNA in a specific manner by catalyzing trans-esterification.	4.56252e-06
NZ_CP053845.1\|WP_173030571.1\|359705_360905_+\|hypothetical-protein	gnl\|CDD\|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	3.29068e-36
NZ_CP053845.1\|WP_173030567.1\|354164_354554_+\|hypothetical-protein	gnl\|CDD\|187811	cd09680, Cas10_III, CRISPR/Cas system-associated protein Cas10. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Multidomain protein with permuted HD nuclease domain, palm domain and Zn-ribbon; signature gene for type III; also known as Csm1 family.	3.33293e-15
NZ_CP053845.1\|WP_173030554.1\|337113_339174_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	1.5615e-38

>NZ_CP053845.1|WP_173030562.1|347369_349043_+|relaxase/mobilization-nuclease-domain-containing-protein
MIVKFFKNRFGGSLRGIDYLLNERVGLGSARVVSGSEAITRGILSMISKKQKLSMGCLSFNELDMNEETKLKIIRSFEEMIFGGFGENFNILWVEHCDKANLELNFCIPKVELLNFRSFNPYYHKKDFSMINTWKNLINLKYGLTDPCDPKNQQIIQGSKKDVKDSKNYDELEKIITDNLTKGKYRCRDDILKSLRDRDIEVTRVGKDYVSIRLPGSKKSKRFKGEIFHEKFRSLKDLGELSSKARERARAYKDARDNSPANQILQKVSLFRAFSRQDGCQSIRYKFREQISRKDLNIAILAHRLKEAKNNRNSEIKNLLSLGEKRYGAGPKFELEADSNTEAKIGFDQIDDRVSFVSASENEEIIKENIDDRYEHKSGGDRLDGCGDIKRDRLRENALRRVSISSIKVIKDRILSKQADIRSLISDLERKRKYRASKQSDLIVKRADIKELGDVIDANEKTIDITSSARGFVKRFGQNIKELYRTFGKFAGKFDKVVRAVAGLIGATGEKSKLDKGKGAECIEKINSESIGRELENGSKLGDKESNVTLVDNFFER
>NZ_CP053845.1|WP_173030561.1|346715_347351_+|hypothetical-protein
MKAVNFPKSVTIRLNEEQLDRLMMNANLAGQTESEYVRGLICGSKTPIHRIDKEAVRQINKFGNLLNQIAAKLNSGDNLDSSALARIEQIRASMDILVNLILNKNNKSITKTSSNFVNQGINSSQSSCAHSVQEKSTEKTTAEPTPSYADNIIQEDASLDEFLYEENSSDMDNNVDTVSSMSCQDKDNIQFCSDLTCSAVQLNLDAKTKDT
>NZ_CP053845.1|WP_173030560.1|346512_346719_+|helix-turn-helix-domain-containing-protein
MNDAIAEKRWLTPKDVAKEYGLSVNTQAKYRMQRIIPFIKINSNVRYDRLELDRWLEKHAVVKNEELA
>NZ_CP053845.1|WP_173030559.1|345699_346419_+|hypothetical-protein
MSKDIEMDGLILKSDPCRALDLLKAIAVSLVEKNSCNNQTILAVSLVPSIIESARELILPFFENYMFVDADKYKFRSYENHFTYDRLTGTYDYDESYLQLVEKIKKRKGCIQDNIDYIAETSKYLDGDLYDLGYCLFMYIVAKINSLICQKHKGYRSVINSFNNLTSAEFYFLYNYKAMAEDRYYKYEKDIQNTLKKISKYRNLKIDERIKRNEFISAINTAIKIIIDDLNYETTFVSI
>NZ_CP053845.1|WP_173030558.1|344556_345693_+|tyrosine-type-recombinase/integrase
MAINKLDYRKVETCLFVHKIKPNVFLLRKVIGSKYFTKVLTLDTRSGWSKREYKNEAKKELVKWLDGVTKQVKGLKFKDTTKVNDLFELWKGKKDIGKKSVASDIAFYETYLQDSIGKEIVVDVIAAQIDDIIHNLMHDGKFNKIRGKVQVLSKRTAYDNTRRILGEMFDIALRNQLIVVNPCALLTKIAKTTRKTIVKDAIGKFYKLKTAILELYKNDPFWRGFFLFCLYGRRKGEVASLKWENVDLENNVYYLIDTKNGNDYRKPLPFLVKEAIMQIPADRCGLVFASPKTGESIKNTDRQKMKLDKFVGFDDFKLHGTRHISGSALEELGANSDIIKDHLTHKRDGVTYKNYVTYDTYLNSCKALEMLDNIKCRI
>NZ_CP053845.1|WP_173030557.1|343366_344548_+|ATP-binding-protein
MLNLIEQYQERFLKNFNTTYKRYLYNEINFSEKLIGIVGARGTGKTTMLFQKLIELKAQNKKALYISLDYPFLGSASLSELAFEFVDNGGEYLLLDEVHKYEDFAAHLKTIYDMSPLNVIFTGSSAVSILNAKSDLSRRVSVFSLEGLSFREFLELENGVTIDKFSLETILKNHQAIANDLKIKLSQFKKYLKFGYYPFYFNKQSSYYESLLNTINLSIDVDLTSLGLVEQKYTYKLKKLLEVVCQSEPFEVNYTKIAALAEISRAKLYDYIAYLKDARLVNMIDEQSRGLSKLVKPAKIYMNNTNLIYAYGDDCKAGTIRETFFANQLRVKHMLNIPKQGDFIVDDKFIFEVGGKNKNFEQIKDISDSYIAADEIEAGSGNKIPLWLFGLLY
>NZ_CP053845.1|WP_173030556.1|341187_342771_+|AAA-family-ATPase
MFEYKVPKKEDGGFDLKSTESNSVIIIGANGSGKSRLGAWMEQQDLDKIHRIGGQRKLNFHDEIPLKSEKASVNGFMYAKEDASDSYSLNKNYRWSGGKEYVTKLIDDFDYVLSALLANKNTTNSKFVENCKKAECEGKEKPNVPLNSLDKLKSIWSAIFPHRAIIEEDSKFYAICNCDGEKYSATQMSDGERSVLYLAAQVLCIPENKTIIIDEPELHLHGSIMNKLWSELEKIRNDCLFIYITHDTKFAANHSGSDVIWVKEYSNGVWKYDYIENDKFPESMLFNILGSRKRIIFVEGNDDSLDVRLYSLIYNNYKIVPCGSCEKVIEYTKAFNGMKNIHDNEAFGLIDMDFRSEYEIKKYKENNVFSIGVAEVENLFIVKEVIEFMSNKMACDKFDLTDIEKQIEDRFLKQKQQQINNAVISELKYQLSTLEICDSQTIYEDIQIKIKIDDIQNEKLIIYDSAKEYVEILKIFNEKGIVESVGHYFNLKNKEYCNQVLRFLEREDKNTVVEIFSNYLPEDIDLS
>NZ_CP053845.1|WP_173030555.1|339964_341164_+|ATP-binding-protein
MLDQLFLKSNDLIRLNNHKFKRYFIDSKDLSHRLIVVLGQRGIGKTTTLAQLASKNKDSLYLSLDDIEISNDITSIIREFVLNGGKHLYLDEIHKSKDISAVLKFAYDNFKDLNIVATGSSALEVLKSSHDLSRRAIVYKMSGMSFREYLGLRYGINLEAVELKDLLASHQEIAVDIINTLKQKELAVIKLFREYLKVGYYPYYNDMPNDTAFYQTLRQSIEATIDSDLLSIYPNLNGNTARKLKILTYAISTNVPYQPNYSSLKSLVDIRDDRTLKEYLAMLDSAGLIRLLMKNELAIKNMDKADKIYLENTNLMYINSPDIGNVRETFFANQLGNITEIYSGKNGDFMVGNNFTFEIGGVKKGFEQIKDMQNSFIAADDIEVGVGNKIPLWLFGFLY
>NZ_CP053845.1|WP_173030554.1|337113_339174_+|methyl-accepting-chemotaxis-protein
MKFSVFNKLSVAIATTLIAIAISIVLIIQLVAVPKVQKESLNLINEIGRSAIGDIALSLESIQGVTTNLAKAVEKLPHDIDTFKLVGENVINNDGNLAIAGGGIWPEPYKFSPSEKKRSFFWVRNANKLDYDEGYNSDQTPDYHNDDWYKDVVNVRQNKCTWSSAYQDPVSKVNIVTCSVAYFNNSNFEGVVTVDYSLVGIEDFLSKQGYLTSEVESKIAYVFMLDSDNNVLYFPNLADKELINFDTLASKFKFLEQIKPHVLNLQDIANISVNNDEILKNKSSITLLKMQETGWTLGLVTPQENITALATDIMTSILSIVFPIIVVCLVLIWFYTKNQLKPLSIIEKGLEEFFKFINHKTDKVETIGIKSKDEFGAMSDMINDNIKTIEAGIRQDAVFTEDVSKIVKEVKSGLLGGLIKANANDPKLDELKSLLNAMLEGLAKNINRIVDTLNTYSTNDFTKRLDSSELVGDTKEMIDKINHLGDEISKMLSSSLNQSDLLQQKSNTLKEYVDTLNKSARSQANSLQESAAAVEQMSSSMSAISQKTQDVIRQSEDIKNIIVIIRDIADQTNLLALNAAIEAARAGEHGRGFAVVADEVRKLAERTQKSLGEIEANTNVLAQGINEMSESIKEQTDAINQINEAVVNVDNLTKQNVEIVNNTNSITIEVENMSKHILADVKKNKF
>NZ_CP053845.1|WP_173030553.1|336546_336954_+|hypothetical-protein
MDERILKFISKMHLLSLAVISEAKPYAASCFYAFDRENFSLIVAGDDKTTHIKALEISSEVAGTIALDTKIVGNIKGVQFKGVMSNASEDERKIYFKRFPYALAMNPQIYAINLNWIKFTNNALSFGKKIEWSRV
>NZ_CP053845.1|WP_173030563.1|350025_350301_-|CRISPR-associated-endonuclease-Cas2
MKFVITYDIQNDKNRKKLSDILEGIGYRVNFSVFECEINETKLKKLIKDAKPLLNTKTDSLRFYRLCENCVGKSFELCDKPAIFETQELFV
>NZ_CP053845.1|WP_173030564.1|350300_352535_-|CRISPR-associated-endonuclease-Cas1
MFTKTLEHIFTKNALSSAFDEISANSLGLDEISYADFKKNFGENSTYLMRSLINGTYTPEPLRKINIPKENRSGVRPIGISSIKDKLVQRVLYSELNPYFDETFLSNSYAYRPNKSTYKAINRASNFINEGYYWILKADVKDFFESIDHSKLLQILQKHIKDAKIINLISLFLKTGGFLKRDFKEHKIGVNQGDILSPMLSNIYLDLMDRFINKTTDKFVRYADDFIICFGEKDEATEFEQKLDEFLKLLNLSLNKEKTKVVNINDGFVFLGVRFFGKNRCVDNDKIQKIISNLHSASKEKSNFIDYIDETNAILLTLKNYYLKIIPPNSPQITQIKEHLIDSLSQKIALHKQNKSINSKKDFTLYLEKIDFGVLFNQNEIKDKITLAITKGYDKYLSQKSYDNDSRKINKKRNFYATKIASDSTLHINQIGVHLGLSKNKFVIKQYGKIYKEFPISKISRIIVDSEHVSLSSAVIWRCAREKIHIDFIDKHYVPYATLLAYNSVSTQTTHKQAMLLNTPAQLYIAMSLVEAKIKNQTNYLKYLNKYHKSLTQNIQKLENILARKLKYVKNTNELLGFEGSAAAIYWDGIKSILPLEFEKRITFGAKDIVNSSLNYAYAILYSKVQECLYLAGLSLHISFLHALDSTKPTLVFDMIEQFRTFMVDRVIVSMLNKDEPITLNKEGLLTDASKKLIAQNMKEKLGSYTMWKKEFCKCENIIMQECYDLARFINGESKSYKPFVGKF
>NZ_CP053845.1|WP_173030565.1|353139_353361_+|hypothetical-protein
MNNETSMILIFSRELRAARNGLDVPLELPDLNKFISNLKNFIKTNTKNDAKESVKCKLFGYVKMGGADEIYRA
>NZ_CP053845.1|WP_173030566.1|353341_354178_+|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6
MRYTELRVLFGSPQKPPFFIGSQVRGAFGYALKSVSCISPSYKCCECFAKESCLYYDFFEKKNSYHRYRLDFELGAEIYDFGIVLLGNACEKLPYIASAAYMMLKRYGLGKDRIKYEKFDMYVNGSACLKDDKISLPRDYVKEFSFDGCSGDVKVKFVTPLRIKKENVFLKNDNISLKEILNSIYQRRLSLFGQDHEVLPFEVKGEITKKDLKYVELTRRSNRQNTTMNFGGLVGSLEIKGVSKECMELLKLGEIIGAGKQTVFGLGKIKTEDMNEQI
>NZ_CP053845.1|WP_173030567.1|354164_354554_+|hypothetical-protein
MSKFSSYFSDEFAALEQRSKDIDEILQDKMFLIGGDFYGIQKFIFDNLGSKNAAKVLRAKSAFCELFMVVLSKFICQKLSIDEKYVLSCTAGKFEILSPKFDQAVFNEIKGVVNTYFIKKWLFSEIVLI
>NZ_CP053845.1|WP_173030568.1|354634_355984_-|restriction-endonuclease-subunit-S
MASWNIVNYNYVISKDRMDSDFFQKKDISLERAILNFNNKKLKELTFEIKERFNKKDWNEPIQYNDIGNTDIMYGEIKDNIINGYDAPNRATFINKKDDLLISTVRPNRNANSIIEDREMLQVGSNGFCNLRAKNNIDPNYLFAYTKTKHFIQMLMRASKSSMYPSVSNYDIINTPIFIASKKSLDEIINNIKRARELRIESKKLYLEAKRMLEQHLGLNSLTLSNENKYICNLEELIFANRTDAEYYKTSYKQIINHINHLNPVKLSHICNFYKGYEVGSDSYIPEGCIFIRVSNVTQEGLAFSESDKYIRDDTYKQLMRYKPNKGDILLTKDGSICVCCVLDDEINGVISSGVIRMTLKNTDIPKEYLVLVINSIIGKMQANRDCGGAIITHWKLDYIKQILIPTLDKKIMSDIHNIIIKSKQTRDESKRLIDLSKNKIEKMIDDIL
>NZ_CP053845.1|WP_173030569.1|355986_358620_-|N-6-DNA-methylase
MTIEEILSTIFKGRVDEYDLTEFKNLDKQANEILEIEKENSNSDKYFLKTLAPFYSKKEKVQVYSSQSGGKSAPEEIIRQLWVYKLINEYNYSKEHIKLEVPVSFGGDINTKHADMVIYSDKSNQNPKIVVETKSPKRRDGIDQLKSYLNALGAEIGIWSNGSETIILYRKKGQDYETLSRIPKLNQTIEDLRKEVFTIDSLEVKHNFKKTIQELEELVLADSGADEFNEIFKLIFCKILDEKESIHKNNKNKELEFRQQSTPKDTYKRISELFDKAKNEWRGIFKNDEKIELRPEHLHVCVGSLERKRLLGSNLRIIDDAFEYLIPSESKKKKGQFFTPRYVIDMCVRMINPKETEYIIDPSCGSAGFLLHSMEWCYPIQDDAELDTRKWNYASKFLYGIDLETRAVKAAKSLMLIAGDGHTNIYGPEVSSIDPKTWLDTLSGRDLKLNLQKNGLLKNEPDEKIDILRDDIWNYYRELQFDIVLSNPPFAGEIKDKELLSEYNLAKPALQRAKNKQAKEERDVLFIERIIDMLKPKGRAAIVLPQGKLNNSSLAFIRDYIFSKTRLLAVVSLHSNTFKPHTGVKTSVIIIQKYSEEELKKINDIKKKVSRNIPNYKKIIEDIISNGDEEVELDIIPEEILSFMNDYFENELIDDNEIDEEKINDSIADLNEEIEKLHLDLVKVREAEEIKEEIKSLKEEKKSYTKNKDKENVTRTSKKLQSLEEELKKAKEAQKTNKDILKSIKNLEEQVDGFIYKQNLFSNKGKLSIIMDSEDLLLGLRDRYILKETASQLNYPIFMAVSDVGGKDSSGNYTYQKDENGNILTNSNGDFIIAQDLVNYNISKEELKDIEAIPNENICIAEAFIKFAKEQKIDFWE
>NZ_CP053845.1|WP_173030570.1|358640_359657_-|IS1595-family-transposase
MSIRTTELDIIKQLFDNLNEKDRKDFIKSIKQHSKKPKNIATTHKANHCPHCNSLSFVKNGKKNNSQRYICRDCGKTFTDTNKTILFSSKKDISVWQKYIYCMIEKYSLHKTAEICDICVDTAFNWRHKILDALQKMQDEVRLDGVVEADETFTPLSFKGHHKNFNLPRLAKHRGTRASLRGLSKEQVCVTSGINLNGLSIAKISNLGKPKLTDLQKVLDKKIVSDSVLVTDSFRAYLKLAKDMNLSHIRIPRNHYKAGAFNIQVVNSYHSRLKSMLIYNFKGVSTKYLNNYLVYHNFVNFAKESRNDKEIILLDFIQKTECISLVRSISGRPNIPLT
>NZ_CP053845.1|WP_173030571.1|359705_360905_+|hypothetical-protein
MLINQYYFRKEPKKFFGVSGVSLSCVECERADFTEPGRYKELRDKISKAVELEKFKKLNLKEQEPVLSYDKGITNQTLCRICNIRKIAHDKDKCEICSAFVRLGERLASDSKKINSKAIGIDFMDVDLGITENIRSYVAKEAGEIVDFEDLAKKSRGDNAIAVIKADVDNMGNFIKNSDVTQSFANFDTFSKGINNFFSLYVPRKMKEKFENSYTVFAGGDDLLIVGSYDQMIELALFVRQEFMKFIKTKGLSISFGIILAKPSTPISFLAQTSEKWLESSKEMDGKDAITIFGETAKWDSYLSVRSKILDEFVKFNIDNTAFLYRLLELCEMSKNVCEDVRNTMWKSKLSYSFTRNMQSKQGGGDMNELLLMLNNVIENNPKESKMAICEYIYKRRER
>NZ_CP053845.1|WP_173030572.1|360901_361306_+|type-III-A-CRISPR-associated-protein-Csm2
MNGYRNGGGNYNAGNKPQANSLPPIVLDYKKDPNLFDTTAKTVAEKISGTKATQMRAFYDYVIELEQKSNTEEFSEILPFVKMLNSKAAYSNARRHSSSEFVEMINKCVAQVSTKDDLRVFKLFFEAVIGFSKK

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Crispr_ID: NZ_CP053845_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053845_2

973448-973643

Orphan

Consensus_repeat	Method
GCAACGCCTCTGAAAACACCGTAACAATAAA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP053845_2

>merge|NZ_CP053845|2|973448-973643|CRISPRCasFinder
GCAACGCCTCTGAAAACACCGTAACAATAAACGGAGGAGTATTTCAAGGAGATATGACCGCATCTGGAGGGCGTGCTAATAGCAACGCCTCTGAAAACACTGTAACAATAAATAGTGGAAAATTTAAAGGGGAAGTATTTATAAGAGGAGGAGACTCTATTAGCGGCAACGCTTCAAATAATACCGTAACTATAAA

>NZ_CP053845|2|2|973448-973643|CRISPRCasFinder
GCAACGCCTCTGAAAACACCGTAACAATAAA	CGGAGGAGTATTTCAAGGAGATATGACCGCATCTGGAGGGCGTGCTAATA
GCAACGCCTCTGAAAACACTGTAACAATAAA	TAGTGGAAAATTTAAAGGGGAAGTATTTATAAGAGGAGGAGACTCTATTAGCG
GCAACGCTTCAAATAATACCGTAACTATAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053845.1\|WP_173031030.1\|960246_961362_+\|tRNA-(uridine(54)-C5)-methyltransferase-TrmA	unknown	unknown	gnl\|CDD\|235332
NZ_CP053845.1\|WP_172201199.1\|975307_975886_+\|cytochrome-C	unknown	unknown	gnl\|CDD\|274003
NZ_CP053845.1\|WP_173031031.1\|961737_962949_+\|threonine-ammonia-lyase	unknown	unknown	gnl\|CDD\|181457
NZ_CP053845.1\|WP_173031037.1\|971983_972712_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP053845.1\|WP_173031042.1\|981896_982388_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053845.1\|WP_173031044.1\|986431_987589_+\|hydrogenase-small-subunit	unknown	unknown	gnl\|CDD\|224654
NZ_CP053845.1\|WP_173031040.1\|978631_979090_-\|methylated-DNA--[protein]-cysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|223427
NZ_CP053845.1\|WP_173031032.1\|963089_963782_+\|DUF4230-domain-containing-protein	unknown	unknown	gnl\|CDD\|379417
NZ_CP053845.1\|WP_173031940.1\|967622_968897_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|214599
NZ_CP053845.1\|WP_173031036.1\|969697_970714_+\|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II	unknown	unknown	gnl\|CDD\|181775
NZ_CP053845.1\|WP_173031039.1\|975998_978557_+\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|273110
NZ_CP053845.1\|WP_173031034.1\|965394_966084_+\|MOSC-domain-containing-protein	unknown	unknown	gnl\|CDD\|225167
NZ_CP053845.1\|WP_173031045.1\|990006_990546_+\|HyaD/HybD-family-hydrogenase-maturation-endopeptidase	unknown	unknown	gnl\|CDD\|99873
NZ_CP053845.1\|WP_169940953.1\|989319_990003_+\|Ni/Fe-hydrogenase,-b-type-cytochrome-subunit	unknown	unknown	gnl\|CDD\|273985
NZ_CP053845.1\|WP_173031035.1\|969080_969512_+\|DsrE-family-protein	unknown	unknown	gnl\|CDD\|224955
NZ_CP053845.1\|WP_173031033.1\|963850_965185_-\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|183427
NZ_CP053845.1\|WP_173031043.1\|983663_984524_+\|D-amino-acid-transaminase	unknown	unknown	gnl\|CDD\|180656
NZ_CP053845.1\|WP_173031941.1\|970863_971991_+\|PAS-domain-containing-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226654
NZ_CP053845.1\|WP_173031041.1\|979225_981781_+\|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase	unknown	unknown	gnl\|CDD\|236424
NZ_CP053845.1\|WP_169940955.1\|987591_989310_+\|nickel-dependent-hydrogenase-large-subunit	unknown	unknown	gnl\|CDD\|366057

Protein	Function_ID	Function_description	E-value
NZ_CP053845.1\|WP_173031030.1\|960246_961362_+\|tRNA-(uridine(54)-C5)-methyltransferase-TrmA	gnl\|CDD\|235332	PRK05031, PRK05031, tRNA (uracil-5-)-methyltransferase; Validated.	0
NZ_CP053845.1\|WP_172201199.1\|975307_975886_+\|cytochrome-C	gnl\|CDD\|274003	TIGR02162, Cytochrome_c-type_protein_TorC, trimethylamine-N-oxide reductase c-type cytochrome TorC. This family includes consists of TorC, a pentahemic c-type cytochrome subunit of periplasmic reductases for trimethylamine-N-oxide (TMAO). The N-terminal half is closely related to tetrahemic NapC (or NirT) subunits of periplasmic nitrate (or nitrite) reductases; some species have both TMAO and nitrate reductase complexes.	1.5185e-32
NZ_CP053845.1\|WP_173031031.1\|961737_962949_+\|threonine-ammonia-lyase	gnl\|CDD\|181457	PRK08526, PRK08526, threonine dehydratase; Provisional.	0
NZ_CP053845.1\|WP_173031037.1\|971983_972712_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	6.9347e-41
NZ_CP053845.1\|WP_173031043.1\|983663_984524_+\|D-amino-acid-transaminase	gnl\|CDD\|180656	PRK06680, PRK06680, D-amino acid aminotransferase; Reviewed.	2.27068e-113
NZ_CP053845.1\|WP_173031044.1\|986431_987589_+\|hydrogenase-small-subunit	gnl\|CDD\|224654	COG1740, HyaA, Ni,Fe-hydrogenase I small subunit [Energy production and conversion].	0
NZ_CP053845.1\|WP_173031040.1\|978631_979090_-\|methylated-DNA--[protein]-cysteine-S-methyltransferase	gnl\|CDD\|223427	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair].	2.654e-50
NZ_CP053845.1\|WP_173031032.1\|963089_963782_+\|DUF4230-domain-containing-protein	gnl\|CDD\|379417	pfam14014, DUF4230, Protein of unknown function (DUF4230). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 203 and 228 amino acids in length.	4.3454e-13
NZ_CP053845.1\|WP_173031940.1\|967622_968897_+\|hypothetical-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	2.76848e-39
NZ_CP053845.1\|WP_173031036.1\|969697_970714_+\|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II	gnl\|CDD\|181775	PRK09314, PRK09314, bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II.	0
NZ_CP053845.1\|WP_173031039.1\|975998_978557_+\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|273110	TIGR00509, Trimethylamine-N-oxide_reductase_1, molybdopterin guanine dinucleotide-containing S/N-oxide reductases. This enzyme family shares sequence similarity and a requirement for a molydenum cofactor as the only prosthetic group. The form of the cofactor is a single molybdenum atom coordinated by two molybdopterin guanine dinucleotide molecules. Members of the family include biotin sulfoxide reductase, dimethylsulfoxide reductase, and trimethylamine-N-oxide reductase, although a single member may show all those activities and related activities; it may not be possible to resolve the primary function for members of this family by sequence comparison alone. A number of similar molybdoproteins in which the N-terminal region contains a CXXXC motif and may bind an iron-sulfur cluster are excluded from this set, including formate dehydrogenases and nitrate reductases. Also excluded is the A chain of a heteromeric, anaerobic DMSO reductase, which also contains the CXXXC motif.	0
NZ_CP053845.1\|WP_173031034.1\|965394_966084_+\|MOSC-domain-containing-protein	gnl\|CDD\|225167	COG2258, COG2258, Uncharacterized protein conserved in bacteria [Function unknown].	2.70545e-68
NZ_CP053845.1\|WP_173031045.1\|990006_990546_+\|HyaD/HybD-family-hydrogenase-maturation-endopeptidase	gnl\|CDD\|99873	cd06062, H2MP_MemB-H2up, Endopeptidases belonging to membrane-bound hydrogenases group. These hydrogenases transfer electrons from H2 to a cytochrome that is bound to a membrane-located complex coupling electron transfer to transmembrane proton translocation. Endopeptidase HybD from E. coli is well studied in this group. Maturation of [NiFe] hydrogenases include proteolytic processing of large subunit, assembly with other subunits, and formation of the nickel metallocenter. Hydrogenase maturation endopeptidase (HybD) cleaves a short C-terminal peptide after a His or an Arg residue in the large subunit (pre-HybC) of hydrogenase 2 (hyb operon) in E. coli. This cleavage is nickel dependent. A variety of endopeptidases belong to this group that are similar in function and sequence homology. They include such proteins as HynC, HoxM, and HupD.	1.40431e-58
NZ_CP053845.1\|WP_169940953.1\|989319_990003_+\|Ni/Fe-hydrogenase,-b-type-cytochrome-subunit	gnl\|CDD\|273985	TIGR02125, CytB-hydogenase, Ni/Fe-hydrogenase, b-type cytochrome subunit. This model describes a family of cytochrome b proteins which appear to be specific for nickel-iron hydrogenase complexes. Every genome which contains a member of this family posesses a Ni/Fe hydrogenase according to Genome Properties (GenProp0177), and most are gene clustered with other hydrogenase components. Some Ni/Fe hydrogenase-containing species lack a member of this family but contain other CytB homologs (pfam01292) which may substitute for it.	8.34046e-79
NZ_CP053845.1\|WP_173031035.1\|969080_969512_+\|DsrE-family-protein	gnl\|CDD\|224955	COG2044, COG2044, Predicted peroxiredoxins [General function prediction only].	8.42661e-07
NZ_CP053845.1\|WP_173031033.1\|963850_965185_-\|hydroxylamine-reductase	gnl\|CDD\|183427	PRK12310, PRK12310, hydroxylamine reductase; Provisional.	0
NZ_CP053845.1\|WP_173031941.1\|970863_971991_+\|PAS-domain-containing-sensor-histidine-kinase	gnl\|CDD\|226654	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms].	2.56136e-28
NZ_CP053845.1\|WP_173031041.1\|979225_981781_+\|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase	gnl\|CDD\|236424	PRK09238, PRK09238, bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase; Validated.	0
NZ_CP053845.1\|WP_169940955.1\|987591_989310_+\|nickel-dependent-hydrogenase-large-subunit	gnl\|CDD\|366057	pfam00374, NiFeSe_Hases, Nickel-dependent hydrogenase.	0

>NZ_CP053845.1|WP_173031037.1|971983_972712_+|response-regulator-transcription-factor
MYSKIKEILKDVNLLLVEDDDDLREAIKSALAHYTNEIYACRDAKEALECFSSHNINLIVSDINMPRMSGLKMASIIRKSDENVPIIFLTAYDNDENMLSAIEVKSSGVLKKPFDKRELVMMMSFAANKFRSDFAKVDLKNGFVFNAFTRELYKDGEVVALTKKEQALLHLFLKNQARTVSFEMIEANVWQGESCTTDTIRSFVYKLRKKLYPKLIQNAQGRGYKLCLNEECDRTISGVGYV
>NZ_CP053845.1|WP_173031941.1|970863_971991_+|PAS-domain-containing-sensor-histidine-kinase
MYLLASKKTQHQNDIERAFAKTPNLGLLLVDESGIVKFINKKFEQIFALESKRYYEQEFDTLVLNSKHLECLKNFSNLKNNPCDNQNFIVSINNFFYRLNISSVLEGGVKFDGFIITASDVTHERELEQNEAEHHRMLIANAKMAVVGEMINSISHQQRQPLSSILLSLENIEDSLNEDRFDEIAEHLNRCKKGVRLMDETIKAFRSFYKNDNNIINFNVKDVINELEFIVKPQMNTNGISFEFICEGGEFMVYAAPSYVKQILLSLLSNSKDELVEFMKEDVFFEPKVWINLQSVKDEICISVSDNGSGIRGDKERIFEPFFTTKKDKGTGMGLYVAKILATDKLGGRLALESAKEPTKFALYLKKGAKEADNV
>NZ_CP053845.1|WP_173031036.1|969697_970714_+|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase/GTP-cyclohydrolase-II
MDRVEQAIADIRNGKMVVMVDDEDRENEGDLVFAGAFSDTQKVNFAITHAKGVLCLAISEDIAKRLELNLMVDKNTSCHETAFTVTIDAKAATTGVSAYERDMTIRLATDHTSKPEDFVKPGHIFPLIAKKGGVLSRTGHTEGSVDLCKYAGVTQSAVICEIVKEDGNMARRADLEEFCKKFGLNMVSVSELVEYRLKHESLIHVKEKSKSKIAGFDAIKYEITDHKDQVHFAFVFGEISKRTNVKFHKTTSDIELLTSAKFEELLKSIEYLSENDGVLVFLQEEKTCDSTIKDFGIGAQILRKLEIEEIELLSSSKNREFVALGGFGLDIVEYKELN
>NZ_CP053845.1|WP_173031035.1|969080_969512_+|DsrE-family-protein
MLKKTLLNLALGSALATVLYASGDEIKGLNVMLTASDTQTQMMAMVLSTKTLEQKKDVRIVLCSEAGDLALKDSKSELQKPLNKSPKDLLQGAIKNGASVKVCPLYLPNKGLDKSALIEGVEVASPDEVAKSLLDEEYKNLSY
>NZ_CP053845.1|WP_173031940.1|967622_968897_+|hypothetical-protein
MLEGGFKKYGEKAFEFEYEGVRKVGACKRYDLANWLVCSSNEFSDYDETLNAVLKNQTILSVLFIAVIVGILVFAISKFLKPLNLISTGLISFFKFLNHEIKEPAKLNVKTKDEFGQMASLINDNISKIESAKISENDFIKEANTFVDSIKSGDFTATLNAQTSNPALNQLKHTFKELQEALKDNIAKNGIELINLLDKFKNQDFTARLDDNGKMAEGVNGLGEEISNMLRANLSQAENLRQKAQALSEYMNELTSGANRQANSLQESAAAVEQMSSSMSAISQKTQDVIRQSEEIKNIIVIIRDIADQTNLLALNAAIEAARAGEHGRGFAVVADEVRKLAERTQKSLGEIEANTNVLAQSINEMSESIKEQADGINMINQSVANIDDLTRQNVIVANKTNEVTAEVDSMAKDIADDVKRKRF
>NZ_CP053845.1|WP_173031034.1|965394_966084_+|MOSC-domain-containing-protein
MAIVKALLIGEVKTYGDANSNDALNKIWQSAIFKTATEGEIYADKFGFHGDEVADKRHHGGVEKAIFANSYENYPVWSEFLGFANLPFGAMGENLTISGLHENDVFIGDVHKIGSLVLEVSQPRKPCFKLSKRWMNAGVAKEIFRSGLSGWYYRVLEAGSCKAGDSVDMVFRDSDSMSVADVNRVFYSPKENAHLIDKFMNLKALSAGWQDDMKRRIEGVYDTSYMDKI
>NZ_CP053845.1|WP_173031033.1|963850_965185_-|hydroxylamine-reductase
MSSIDQKMFCYQCEMSAPNGCGSKGQDKGTCGKDSTKARLQDMMIFGLKGMSAYRHHANELGANTKNVDDVIAQTLYFTLTNMNFNFEEHIEQILKVGKAGVEVMDLLSDAHTSTYGVPSPVKVTQNKAEGKAILVSGHNLHMLKELLEQTKDKGVNIYTHSEMLPAHGYPELRKYPHLKGNIGKAWFDQTKLFNAWQGAIIMSTNCIVPLRSSCTYADRLFGYDIAGTEDVTHINGDDFTPVIEKALSLPDISGFDSDEIISTGHHYKAILPMAGEILKAVTEGKIRRFFVIAGCDAPGKDREYYRELAVSLPKDCVILTSSCGKFRFNDIDFGFIEGTQIPRYLDLGQCNDSNGAVKIALALSEATGIAVNDLPVSIVLMWMEQKAIIILFALLYLGVKNIHVGPSLPEFMNEEILNFLVQNYNLGLISGDAKADLKKYLGE
>NZ_CP053845.1|WP_173031032.1|963089_963782_+|DUF4230-domain-containing-protein
MVDYVIVALLVLVLIVFGVIYKVNKQASKASKEIKSDITSEISQIKSIGELSVFQVYSKEIVTKTDHAFGSFGKEYLRWLVSEKKLSMIFEFEINFIYDLTSPKMDIVNTANGEYLIVMPPCKYKFSIANMKFYDEKNGKFIPFLLPDSLNGFFGSTFTEEDKNKLITEARNEVEKMSVKLISELQNKIHKSARDTLEAIAKSFGARSVRFEFHDNDEPLDRRLNLQNVA
>NZ_CP053845.1|WP_173031031.1|961737_962949_+|threonine-ammonia-lyase
MISLNKIIQAKRAISGFVYKTPFAFSPKLSLLSGAQIYLKKENLQRTGAYKIRGAYNKIANLSDEERAKGVVAASAGNHAQGVAICAREFGAPAIIVMPESTPLLKVSGTKALGAQVILKGDNFDEAYEYANEYARERGMSFIHPFSDEFVMAGQGTVGLEMLDEVADLDMIIVPVGGGGLISGIASCVKQVNPNIKVIGVSAKGAPAMYESFKAKKSKNSKTVRTIADGIAVRDASEVTLAHILECVDDIVQVDDEEIANAILFLLENQKIIVEGAGAVGVASVLHSKVKFEKDAKIGIVLSGGNIDVQMLNIIIEKGLIKSARKMTIKVTLVDKPGALMSLTDCLKTANANIVKIDYDRFSTSLDYGDASITITLETKGKEHQEMVRNTLNDHGFEFTQLF
>NZ_CP053845.1|WP_173031030.1|960246_961362_+|tRNA-(uridine(54)-C5)-methyltransferase-TrmA
MTASECKFVGECGSCTLNLSYDEQVEFKKKFIKEKFSEFYGGEFEFFASVPTCYRSRAEFGIYHDKDKLSYYMRGDKRKFVLIDECLKVEAKIANLMQPLLNFIEKNENLKHKLFGIEFISTKDSLLAMLLYHKKLDGLKSEFDELANKFDISVIARSRGQKLVSGSENLSERLYIEGKEYKFSFSEGAFIQPNRAVNEKMISWTKGCVHGANDLLEMYCGHGNFTIPLASEFNQVLATEISKKSIANALKNCELNEVKNIKFIRVGSEELMQAFSGVREFRRLEGVNLKAFNFSHILVDPPRAGLDMSVINFIKNYENIIYISCNPETLKENLKELDKSHEAVKFAIFDQFANTTHIECGVLLRRRSANS
>NZ_CP053845.1|WP_172201199.1|975307_975886_+|cytochrome-C
MKKVLLSATIACSLFASGDVYSDVVKPLFLDATSDKSIGRLLPTNAVKISEEGSDRVKVVIRGYKNPAVDNVIYYSDSQRVIAAAFAKTAKIDYKMIEKGKDGKWDKVEVVAYTPKGEFVNEVSSMFARADQMYKDNCGICHTAHATDHYKANQWPNLVKSMLSRTAIDKKDEWLITQYLQKHSSDVSAGAK
>NZ_CP053845.1|WP_173031039.1|975998_978557_+|molybdopterin-dependent-oxidoreductase
MNRQRRDVLKFGALLAGAPLISKVAATNLLADELNSGLVKNGTVNTAAHWGMLKVEVKDGRIVGSNPIQKTSDIPNPLQNFTADMVYKSRIRYPMVRKSYLMDPNNPKPELRGKDEWVRVRYEDAIKLVARELKKTRKEKGIQSVFAGSYGWKSSGNVHNSRILLHRFMNLSGGFVGHLGDYSTGASQVIMPHVMGSIEVYEQQTSWPLILEHSKVVVIWGANPLNTLRIAWTSTDEQGFKYLEELKKSGKKVIIIDPIKSETAQYFDKAQWVTPLPNTDTAMMLGMMHYLYTSDKYDKEFISTYTVGFDKFLPYLLGKTDGVAKDLDWASKICGLKASLIKELADTFMNNRTMLMSGWGMQRAHHGEQPHWAMVTLAAMLGQIGLPGGGFGLSYHYSNGGAPTCKGGVIGGMNSASLGFFNEEGEFIGTNTGSFDKNGRFIAKPVAASGTGQSWLSKATEYVFPLARIADALLNPGKVIDHNGKKITYPDIDFIYWVGGNPFCHHQDTNTLVKAWQKPRTIVVNEPYWTPTAKMADIVFPTTTAYERNDITMTGDYSNMNIVPMKQVVEKFEESRDDYQIFSDLCKAYAKNLVVAYTDNGKNEFDWIKEYYDAAYNQVISVPDLVTDMKPFNEFWAANEPVTFASTPESDQWIRHGEFREDPILNALGTPSGLIEIYSETIEKMGYDDCKAHPMWFEPIEWLGMKDKPAKFHMISAHPADRLHSQLSNTSIRDNYAVANREPIWINEKDAKELGIKDGDLVRVFNARGEALAGAVVTKNISRNVVRLCEGAWYDPDMNGLCKNGSANALTIDIPTSKLANGNIAHTALVNIEKFTGVAPKLTAFSDPKFAM
>NZ_CP053845.1|WP_173031040.1|978631_979090_-|methylated-DNA--[protein]-cysteine-S-methyltransferase
MQKAYLKSPIGILEICADENGICELNFVDKFVKTEVKDENLKLCLKELDEYFKGNLREFKCKFQISGTPFQKSVYEALLKIPYGKRVTYAQLAKNIDNPKACRAVGSANGKNKIPVIIPCHRVVAGNSLGGYSGGEGLKTKEFLLNLEKENL
>NZ_CP053845.1|WP_173031041.1|979225_981781_+|bifunctional-aconitate-hydratase-2/2-methylisocitrate-dehydratase
MDFFKEYEKHVDERALLGVPPLALSVEQTKQVCELLKAGDKRQPELINLLATRVNPGVDDAAKVKAEFLNEIINHDVKIAGIDKLSAVSMLKPMLGGYSVIVLIASLQNSDKSVAKAACEVLKETIFVHDYFNDVLNLSKSNEFAREVMISWANAEWFLSRKPLDEVIKAVVFKVPGETNTDDLSPASEAFTRSDIPLHANAMLIRRQLGSLEKIAELKKSGREVVYAGDVVGTGSSRKSGINSIQWHLGRDIDGVPNKKTGGIVIGTTIAPIFFNTAEDSGALPIIADVSLLETGDEIEIYPYKGEIVQAGKVVSRFTLMPNTLLDEIRAGGRVPLIIGRGLCMKARAALNLGDEQIFTKPTQPKDDGEFGFTLAQKIVGKACGIEGVRPNSYVEPLTLTVGSQDTTGPMTRDEIKELASLGFSADFVLQSFCHTAAYPKPSDSITHKTLPKFMNSRGGVSLKPGDGVIHSWLNRMVLPDTLGTGGDSHTRFPIGISFPAGSGLVAFAAVLGVMPLNMPESVLVRFKGNFQRGVTLRDLVNAIPYYAIKQGLLTVEKKNKRNIFAGKILEIEGLESLKVEQAFELSDASAERSAAACVVALDKAPVIEYIRSNITLIEAMIKAGYESRATLERRANKMREWLANPTLLKADSNAKYTEVIEINLDEITEPILACPNDPDDVATLSEILADERRAKNIDEVFVGSCMTNIGHYRALAEVLRGEGEIPTRLWVVPPTKMDKDKLEREGYYDVFRSVKAHIEVPGCSLCMGNQARVKDNAVVFSTSTRNFDNRMGLGAKVYLGSAELAAVCALLGRLPSVEEYMRIVPERIAGKEDEIYRYLNFNEIENFKID
>NZ_CP053845.1|WP_173031042.1|981896_982388_+|hypothetical-protein
MAIIIPKGIRKLRALLIWFLVFFGGLLVIWIVGYYYSYKYANINIYEEPSINAYYSGERTTTQGFPVLNQDTGYNATEDIAFKMLMNGSLDYIDYKVKSDNDAYNGKYIRVYVDNNISKDCYISPRLDLIKFMKDQKVTYQEVNVFFNELHSSKKVRSKYLKR
>NZ_CP053845.1|WP_173031043.1|983663_984524_+|D-amino-acid-transaminase
MKGIVYLNGEFMDANEAKVSAFDRGFIFGDGIYEVVPVLGGKLVDKDGFWQRFEQSLAAIELSLPCEKSKFEEILNEVISRNSLKEGGVYMQITRGVADRDFCFIKNLEPTCFIFCYEKEIINNPDAINGISVVSVEDIRWKRRDIKSISLLAQCYAKEQAVKKGAYEGFMVEDGLVTEATSSSAFIIKDDVLITKPLSNEILPGIRRKVILGFAEQAGLKIEQRAFSMDDVYNADEVFISAATLLLLPVISADGRAINGGKVGKYAPKLRQMYVDKLKKEIENYN
>NZ_CP053845.1|WP_173031044.1|986431_987589_+|hydrogenase-small-subunit
MREDVLARINERLNLLAKMPRVKNDSSITEALRAKGFTRRDFMKWAGAMTAFMALPASMTPIVAKAAELSDRLPVIWLHMAECTGCSESLLRTDTPTIDSLIFDYISLEYHETIMAASGWQAEENLEHAIEKYKGKYILLVEGGIPMGATEGYLTVGPLGYTGYYHAKHASENAAAIFAIGTCSSFGGVQAAKPNPSNSQALSKATSKPVINVPGCPPSEKNIVGNVLHYILFGTIPSLDVFNRPKWAYGLRIHDLCERRGRFDAGEFVQRFGDEGAKDGYCLYKVGCKGPYTFNNCSRERFNQHTSWPVQAGHGCIGCSEPDFWDTMGPFEEPMGDRLYNTVLGLGADNVSDKIGIGVLALAGIGMAAHAAIATFAKDKDEKKA
>NZ_CP053845.1|WP_169940955.1|987591_989310_+|nickel-dependent-hydrogenase-large-subunit
MSEQRIVIDPVTRIEGHLRVEVVVDENNVVKEAYSGSTLWRGIEQVVKGRDPRDAGFFTQRICGVCTYSHYRAGIVAVEKALGIVPPLNAELTRTLMNAALYLHDHVVHFYQLHGLDWVDIVSALEADPRKASEEAFKYCETPYATGADKLKEVKEKVAAFAKKGNLGPFANAYWGHSTYRFTPEQNLIVLSHYLECLSMQRTIAQMMAIFGSKNPHPQSLTVGGVTCVMDLLSPSRLGEYLTKFKETVDFVNRAYYPDILMAAKAYGNEPSVLNDVGVANFLSYDEFLVGRNDNLFQSGIVLNGDLSKVYEVDDMKITEEATRAWYKDDKPLHPYDGKTDPNYTGLVDMKTLDGHGKMVDTKVFDAKGKYSWIKAPRYEGKPMQVGPIASIVVNYARGNKRVVPIVDKFLQETGLPINAIFSTLGRTATRMLEAKVVADHGLTAFNNLIENLKTDQETCAKYVIDNKKEYKGYFAGNAPRGALSHWCRIKDGVITNWQAVVPSTWNASPKDANGIRGSYEECIIGLKIADLTQPLEIIRKIHSYDPCIACAVHVMDTKGNKISEYKINPNL
>NZ_CP053845.1|WP_169940953.1|989319_990003_+|Ni/Fe-hydrogenase,-b-type-cytochrome-subunit
MSHHKPDRISEYEFSIGLRLTHWIRFVAIAFLVVSGFYISYVFIAPEVTNEPTIFLNAKWRAAHQVAGFILIAVTIFKLYLFFFDKLSRKELASIYDFFSPKVWIAQIKYYIFLGPHPHLRGVYNPLQFASYLFFYLVLFVICLTGMVLYVHVYHEGLGGLFYEPMRYFEELMGGLANVRTIHRVAMWIIMIFVPVHIYMAVFNAVKGKNGAMDAVVSGYKFVKEEH
>NZ_CP053845.1|WP_173031045.1|990006_990546_+|HyaD/HybD-family-hydrogenase-maturation-endopeptidase
MKVLVLGIGNVMFSDEGVGVHFTEMIKRNYKFTHEINSLEFVDGGTLAIALTPIIAEFDYLIVVDCISADESSIGDVYFFDYEAMPNQISWDGSAHEVEMLQTLQLMDLAGDMPKTKILGVVPKRIEPMSFELSSEIKASAKVMEKTLLKHLEELGFSYEKISNLNIIDLANEYKNKGI

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Crispr_ID: NZ_CP053845_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053845_3

1052765-1052873

Orphan

Consensus_repeat	Method
AAAACACCGTAACAATAAACGGAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP053845_3

>merge|NZ_CP053845|3|1052765-1052873|CRISPRCasFinder
AAAACACCGTAACAATAAACGGAGGGACATTTGGAGCAGAAGTAACTATAACAGGAGGGATTTCTGGAAATAGCAATGCCTCTAAAAACACCGTAACTATAAACGGAGG

>NZ_CP053845|3|3|1052765-1052873|CRISPRCasFinder
AAAACACCGTAACAATAAACGGAGG	GACATTTGGAGCAGAAGTAACTATAACAGGAGGGATTTCTGGAAATAGCAATGCCTCTA
AAAACACCGTAACTATAAACGGAGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053845.1\|WP_173031103.1\|1063546_1064743_+\|acetate-kinase	unknown	unknown	gnl\|CDD\|234680
NZ_CP053845.1\|WP_173031104.1\|1064747_1065098_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053845.1\|WP_173031100.1\|1056061_1057750_-\|acetolactate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|181458
NZ_CP053845.1\|WP_173031099.1\|1054634_1055591_-\|UDP-3-O-(3-hydroxymyristoyl)glucosamine-N-acyltransferase	unknown	unknown	gnl\|CDD\|234858
NZ_CP053845.1\|WP_173031095.1\|1047801_1049037_+\|histidine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234586
NZ_CP053845.1\|WP_172201597.1\|1047209_1047809_+\|dTMP-kinase	unknown	unknown	gnl\|CDD\|234814
NZ_CP053845.1\|WP_173031943.1\|1041931_1042495_-\|C40-family-peptidase	unknown	unknown	unknown
NZ_CP053845.1\|WP_173031094.1\|1046142_1046736_+\|UbiX-family-flavin-prenyltransferase	unknown	unknown	gnl\|CDD\|235677
NZ_CP053845.1\|WP_173031093.1\|1045336_1046146_+\|flagellar-basal-body-P-ring-formation-protein-FlgA	unknown	unknown	gnl\|CDD\|236280
NZ_CP053845.1\|WP_173031091.1\|1042738_1044004_+\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|236486
NZ_CP053845.1\|WP_173031097.1\|1050885_1052049_+\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|235596
NZ_CP053845.1\|WP_173031106.1\|1065902_1066334_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053845.1\|WP_173031101.1\|1058089_1061347_+\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173794
NZ_CP053845.1\|WP_173031102.1\|1062167_1063547_+\|phosphate-acetyltransferase	unknown	unknown	gnl\|CDD\|235537
NZ_CP053845.1\|WP_173031096.1\|1049029_1050865_+\|biosynthetic-arginine-decarboxylase	unknown	unknown	gnl\|CDD\|235427
NZ_CP053845.1\|WP_169940842.1\|1046732_1047209_+\|pantetheine-phosphate-adenylyltransferase	unknown	unknown	gnl\|CDD\|234674
NZ_CP053845.1\|WP_172201585.1\|1061391_1062096_-\|flagellar-basal-body-L-ring-protein-FlgH	unknown	unknown	gnl\|CDD\|234700
NZ_CP053845.1\|WP_173031105.1\|1065100_1065721_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053845.1\|WP_169941008.1\|1055590_1056052_-\|acetolactate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|183365
NZ_CP053845.1\|WP_173031092.1\|1044004_1045162_+\|molybdopterin-molybdotransferase-MoeA	unknown	unknown	gnl\|CDD\|238452

Protein	Function_ID	Function_description	E-value
NZ_CP053845.1\|WP_173031103.1\|1063546_1064743_+\|acetate-kinase	gnl\|CDD\|234680	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed.	0
NZ_CP053845.1\|WP_173031100.1\|1056061_1057750_-\|acetolactate-synthase-large-subunit	gnl\|CDD\|181458	PRK08527, PRK08527, acetolactate synthase large subunit.	0
NZ_CP053845.1\|WP_173031099.1\|1054634_1055591_-\|UDP-3-O-(3-hydroxymyristoyl)glucosamine-N-acyltransferase	gnl\|CDD\|234858	PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional.	2.96913e-143
NZ_CP053845.1\|WP_173031095.1\|1047801_1049037_+\|histidine--tRNA-ligase	gnl\|CDD\|234586	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed.	1.41691e-179
NZ_CP053845.1\|WP_172201597.1\|1047209_1047809_+\|dTMP-kinase	gnl\|CDD\|234814	PRK00698, tmk, thymidylate kinase; Validated.	1.29319e-63
NZ_CP053845.1\|WP_173031094.1\|1046142_1046736_+\|UbiX-family-flavin-prenyltransferase	gnl\|CDD\|235677	PRK06029, PRK06029, UbiX family flavin prenyltransferase.	1.51658e-88
NZ_CP053845.1\|WP_173031093.1\|1045336_1046146_+\|flagellar-basal-body-P-ring-formation-protein-FlgA	gnl\|CDD\|236280	PRK08515, flgA, flagellar basal body P-ring formation protein FlgA.	4.53067e-47
NZ_CP053845.1\|WP_173031091.1\|1042738_1044004_+\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	gnl\|CDD\|236486	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated.	0
NZ_CP053845.1\|WP_173031097.1\|1050885_1052049_+\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|235596	PRK05764, PRK05764, aspartate aminotransferase; Provisional.	0
NZ_CP053845.1\|WP_173031101.1\|1058089_1061347_+\|S8-family-serine-peptidase	gnl\|CDD\|173794	cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases. Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.	3.58775e-57
NZ_CP053845.1\|WP_173031102.1\|1062167_1063547_+\|phosphate-acetyltransferase	gnl\|CDD\|235537	PRK05632, PRK05632, phosphate acetyltransferase; Reviewed.	0
NZ_CP053845.1\|WP_173031096.1\|1049029_1050865_+\|biosynthetic-arginine-decarboxylase	gnl\|CDD\|235427	PRK05354, PRK05354, biosynthetic arginine decarboxylase.	0
NZ_CP053845.1\|WP_169940842.1\|1046732_1047209_+\|pantetheine-phosphate-adenylyltransferase	gnl\|CDD\|234674	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional.	1.37265e-90
NZ_CP053845.1\|WP_172201585.1\|1061391_1062096_-\|flagellar-basal-body-L-ring-protein-FlgH	gnl\|CDD\|234700	PRK00249, flgH, flagellar basal body L-ring protein FlgH.	5.31925e-80
NZ_CP053845.1\|WP_169941008.1\|1055590_1056052_-\|acetolactate-synthase-small-subunit	gnl\|CDD\|183365	PRK11895, ilvH, acetolactate synthase 3 regulatory subunit; Reviewed.	3.0376e-66
NZ_CP053845.1\|WP_173031092.1\|1044004_1045162_+\|molybdopterin-molybdotransferase-MoeA	gnl\|CDD\|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	1.82887e-132

>NZ_CP053845.1|WP_173031097.1|1050885_1052049_+|pyridoxal-phosphate-dependent-aminotransferase
MLSNRVQVLSESLTIAISSLAKEMKAKGEDVVSFSAGEPDFDTPKAIKDAVVKALDKGCGKYTAVPGSPDVLKAIASKLERENGLKYETSRIITNVGAKHSLFNIFQALIDDGDEVIIPSPYWVSYPEMVKFSGGVPVYIDTCEKSGFKITPEQLKTAITPKSKILVLNSPCNPTGAIYSSKELLALGEVLKDTKILIASDEIYEKLSYDTPFTAVASVSEDMFKRTITINGLSKCGAMPGWRFGYMASVIPELIAAVKRLQSQSTSNISSIVQEGAIAGLSGQADEDMTMMRAEFIKRRDKACEMINSINELSVLKPEGAFYLFVNCSKVEPDSMKFCRRLLEEAKVACVPGVGFGMDGYFRLSFATSMENIIKGIDRIAEFVKDY
>NZ_CP053845.1|WP_173031096.1|1049029_1050865_+|biosynthetic-arginine-decarboxylase
MNNYGLNLWGDSNFIIENGKVCINNGSKPAIIDIVKDIRSEGYRGPLLLRFPHLIKKQIQQIYSNFKSAIKEFDYKGDFNAVYPLKVNQYPGFVKNLVKHGKSYGYGLEAGSKAELLLVMAYNNENAPITVNGFKDKEMINIGFIAAEMGHNITLTIEGLNELEAIIATAKERFAPKPNIGLRIRLHSSGSGIWAKSGGINSKFGLTATELIEAVNLLKEANLLDCFNMIHFHIGSQITEIHPLKKALIEAGNIYAELRKMGAKNLKAINLGGGLAIEYSQFKENSSRNYTLSEYANDVVYLLKTIANQKKELEPDIFIESGRFVAASHAVLVAPVLELFSQDYTEEKLALKKKNPQLITELVDLLNTIKPSNAMEYLHDSMDHMESILTLFDLGYVDLVDRSNAEILTHLIIKKAVKMLGTKQNNPELLKLQEEVQERYLINFSLFQSLPDFWGLKQNFPVMPLDRLDIRPTRSASLWDITCDSDGEIGFDDEFNPLFLHDIDVEKEEYFLGFFMVGAYQEVLGMKHNLFTHPTEATIDIDENGYKVAHLLESQSILDIMEDLDYDIYEIQDTLNERIEKSKLVNETQKKQILGEMYLFLNDNGYLKTIS
>NZ_CP053845.1|WP_173031095.1|1047801_1049037_+|histidine--tRNA-ligase
MISALRGMKDHLPPSGQTYEYVIKICEEVAKNYGYEFVLTPHLEQTALFRRSVGESSDIVGKEMYQFIDKGENDVCLRPEGTAGVVRAFIEAKFDKAGGVRRYFYHGSMFRYERPQKGRLREFHQFGCECFNEPSVYEDASIILMIDEIFARLNIKTALKINSLGDSECMPAYREKLVKFLDEHEAEICEDCKRRKLTNPIRVLDCKEQKCQTIYKNAPLIIDNLNDECKEDFKKLQEILTTNGVKFEVDPRLVRGLDYYCKTAFEFISNEIGSQSAVAGGGRYDKLVEYLGGKSSYGVGFAMGVERIMEILSSRENSSYREGIYICALDKEGLDIIHQAGINLRKKYKTNISYEAKNLQKHLKNADNLNAEIFLCMGENELKEGKIWYKNLKNKVEKTINLNELEGVLSE
>NZ_CP053845.1|WP_172201597.1|1047209_1047809_+|dTMP-kinase
MYILFEGVDGVGKSTQIKKVAKFYENAVITYEPGGTELGKKLREILLGKNSLSKEAEILLFLADRAEHFDKVISKNKDKIILSDRGFISGMAYAMANENRAVKACDESYMKKLLEFNKFALQGNLPDKIVFFEADLELLNSRVFSRGLDHIESRGAEYLLKVQECMKRVLNSLDIKFLAINASDEMGKITNLIKEFIDD
>NZ_CP053845.1|WP_169940842.1|1046732_1047209_+|pantetheine-phosphate-adenylyltransferase
MKKSCIYPGTFDPITNGHIDVIKRATKIFDKVIVGVAKSESKQPYFSIKKRVEMAKIATANLKNVSVISFDNLLVDFAKSHDINIVIRGLRAVSDFEYELQIGYANATLWDEFETVYLMPSLKNAFISSSIVRSVLRHNGDVSKLVPNEILEILKEKN
>NZ_CP053845.1|WP_173031094.1|1046142_1046736_+|UbiX-family-flavin-prenyltransferase
MSKILVAISGASGVNLGVKLANEIAKTSECHVIISHNAKLVLSKEEEILLEDNNKSSELYQIYKNLKNTAKIYDDSDISASLASGSFGIKASIIAPCSINTLAKIHAGFADTLITRAAAVALKERRKLILGVREMPFSTLALEQMARLSSMGVIIAPPVLGYYADIKSVEDMENFIIGKWLDALGIENQIYKRWGKE
>NZ_CP053845.1|WP_173031093.1|1045336_1046146_+|flagellar-basal-body-P-ring-formation-protein-FlgA
MYCINDDTITLKTLGFNGRNEEILNLNQQKAAKINSNKMAEILKFHLINFTDKSGGEIIFVKHCDEILKLQRDFLAAVTNEYPRIKFSQIPTISAQSELPKDFSTYKFEKLFINSLNSQKGSFRATFILPDSSVKSIFFRYEFKAKMPILRSSKQISAKHILSVLDYSLDEIDFGDFSKDYFTEIPVSKMISKQNIKAGEILAKRQFQMLSMIKKGDSIQAVFNDGSLNVSIEVRALEDGNLGDVIKVRGRDKKVFYATIISKKQVLIR
>NZ_CP053845.1|WP_173031092.1|1044004_1045162_+|molybdopterin-molybdotransferase-MoeA
MLIQEALKKIFENINLKNSSEFISIDNAVDKIVAEDIVAVKNLPSFDNSALDGYAINFADRKAPISITDTIFAGDGREISIKSGECVKIMTGAKMPKGADTVVRFEDAIIESGKLIVDERTKQFSAFRHKGEEIKSGDVLFGKGTRLSAAHVMMLAAQGISFVRVFCEPKIGIFSSGDEIVEPWQSASEDQIYNANAIGMQALLSKFGFKSSYLGIIKDDLNDTINAINSADMDVLICSGGASKGEADFMKTALLSLGFTELFSHIDARPARPSKAYVKDSKIVFIMPGNPMSAFLSAFLLIVPFLLKRPLEATKAYIMQDIKVKSGRENVVLGRLEEDKFYVTDDNKYGSGMIMPLVKSNAICLSNFDQSEFRQNDEVLVYKFS
>NZ_CP053845.1|WP_173031091.1|1042738_1044004_+|UDP-N-acetylglucosamine-1-carboxyvinyltransferase
MHYLEIEGNAKLSGEVAISGAKNAALPLIAATLIMKDEVTISNVPNVADIKTLAKLLENLGSKCEFADHNTIKINTNEINSTKANYDIVRKMRASILTLGPLLARFGHCEVSLPGGCAIGQRPIDLHLSALEKMGAKIDIKQGYVVASVPEGLKAAEIVFDKITVTGSENIIMAAALAHGVTKLTNVAKEPEVVQLCEVLASAGVQIEGIGTDELSIKGTGQNLINVKYIEVIPDRIEAGTYLCAGAITNSKITIKKANANHLKAVLTKFKQMGFGIEVQDDAITILPAGKILPTEIVTTEYPGFPTDMQAQFMALALMAEGVSTIDERLFENRFMHVSELTRMGADIRLNGHIASVYGGIKLNAADVMATDLRASSALILAALVADGTSRVHRIYHLDRGYENLEVKLANLGAKIRRLEE
>NZ_CP053845.1|WP_173031943.1|1041931_1042495_-|C40-family-peptidase
MQGGANEALSKIVMQSRLKKSNEISNLMSRYLNKRDGRDCSGFVSLINKKSENIYFQERNLDKFYTKRGLKSEAIFNLYQSQNLIIQNEPKVGDLIFFNNTTDKTKNYKKSKIITHIGIVDKIYEDGTIRFTHHSGKKSKHGFMNLNKKNKHKAQNKEINSYIVNCKKKNSSCLASNRFAGFGSVKF
>NZ_CP053845.1|WP_173031099.1|1054634_1055591_-|UDP-3-O-(3-hydroxymyristoyl)glucosamine-N-acyltransferase
MKLSEIYKILEIEFKGNDFEVTALNSLANAKSSELSYCDGEKNAKFISNSKAAAILISENLKEFVPSDTRAIIVENAHLAFAILSKFFAKELFASSPKETQISPSAKVMQNVYIGSGVTVGEGSVLMPGVFLGDNVKIGKNCILHPNVVVYNDCVIGDECHINANAVIGSDGYGYAHTKTGEHIKIYHNGNVILEDFVEIGACTTIDRGVFEPTIIKRHTKIDNLVQIGHNCELGQGCLIVAQTGLAGSTKLGRNVVMGGQSGTAGHLKVGDFAQIAARGGVGKNIEGGKKYAGAYPIMELGEFFKLQAKILRFFKKN
>NZ_CP053845.1|WP_169941008.1|1055590_1056052_-|acetolactate-synthase-small-subunit
MRRVISVIVLNEHGVLSRISGLFAGRGYNIDTLTVAPIPETNLSRLSIVTVGDERVLEQIVKQLHKLIPTYKVIETGEFVEKEMALVKIPLSENFGGLDAILKAYNGIVANTNENFIVVMVADDTIRVNNFLKAIKKYNPADIVRGGSVLMDM
>NZ_CP053845.1|WP_173031100.1|1056061_1057750_-|acetolactate-synthase-large-subunit
MKELNGSQMISEALYKEGVDIVFGYPGGAALNIYDETYKQRYFKHILVRHEQAAVHAADGYARASGKVGVAFVTSGPGFTNAVTGLATAYSDSIPIVLISGQVASSLIGTDAFQEIDAVGISRPCVKHNYLVNSIEELPRILKEAFYIARSGRPGPVHIDIPKDITAAMGNFDYPEEIKMLTYKPTYKGNAKQIKKAAEAISAAKRPLLYLGGGVVASGASELVRKFAKKTGIPAIETLMGLGILSHDDENLLAMAGMHGSYAANMALSEADLLIALGARFDDRITGKLSEFARYAKIIHVDIDPSSISKIVNAHFPIVGDLKSVLEELIQRVEVNPENIKDWKDILSRYDKLNPLAYSDSDEVLKPQWVIEETAKIAGDDTIISTDVGQHQMWTAQFYPFSRPRQLITSGGLGTMGYGLPAAMGAKCADPSKTVINFTGDGSILMNIQELITAAENGIAVINIILNNNFLGMVRQWQTFFYEKRYSSTDLSVQPDFVKIVEGFGGVGFVCKTKDEFRNALKEAIKLGKVAMLDVRVDRFEDVLPMVPAGAAIYNMILKSKE
>NZ_CP053845.1|WP_173031101.1|1058089_1061347_+|S8-family-serine-peptidase
MRSEFSRAARTNKIALSIFACIFLASGANAYKELGTLGNTLSWESDEYKKDWGLDSMNASIAYAMGFSGEGVKIGVMDSGMLMSHPEFQDGRFSTIKSIGEYSKNGMRYPDTQYGNSPFKKGSSSDYDKSNKGEFKKGESFNVGGEWIAGINDSHGTHVGGTIGASRNGKGMHGIAFGSKIYSANTGGNDGMTYGPNQDYNFFLKGYTALADAGVRVINNSWGSNRKVNSAYPGATGWKIEYLKDGMGNYIRNPDGSVKFKIIKTNDPKDHMDLKDLDSAKKAYYQFVVSGEKSFIDAAYEVAVNRRIIQVFTAGNRDNMEESFTRAMLPYFRPDAEKYWVNVTGQKENDGQRFNLAGHSKWWTIAAPGMNIYSSIVDIKTGKSGYASWGGTSMAAPHVSGALGVIFSRYTYMSADQVRDTMLTNARQTKKNTSTPLEGWTSALGTPDARWGWGILDLGKAMFGPGQFLGKFDVSMEVDDIWSNNISDVAIKHRKTEDDNEAATWNARKALLNTKASLTSEEKAEIVFETAREKARAQRATEGYEGSLVKRGSGTLTLVGDNTFTGNTTIYGGKISALNQSLTKSNVVVENGGSLEILKERKYYVPSSTGWKEVTKTSTSDVVTATINNGGAFLLTRPGSANVNVTFKDGSLVGISENADELVELMKSPSLTRGYSAQGAFIGYEKTKFAKEYAFFNLTKEFANDKLKINVKKNSKQMGDFATSSNQKEVANFIEQSAILAPSNASVGFRSVTRNSLKTSDLYRNLLFATPDQAKATFKTLANDGNFAAQNTSVLNSILLRNSISGHKANINAVNTNDTYSGLSFWTTTIAHNFKYDSVDAKSQTFGQIFGADGMASDNTRFGGVLGLSKTLTKIDGEKDYKVLNSNLGIYTQTDINDFKLNTMATYTMGKRHKESSSSIVEYVSNTKTKNKEAIAMVYADISHKGIESANFALSPYVGFGYINAKVKTSEQQIGVYTMTTSKDNRDVTVATIGIKPSYAFGIFNANANIAYNRLFGQKAPSTTVGLGANGSIGLEGEKLTDLTTIDAGLEAKIFKNGSVRLSYIGAFGDNVKSNGLNAKFSFMF
>NZ_CP053845.1|WP_172201585.1|1061391_1062096_-|flagellar-basal-body-L-ring-protein-FlgH
MKAKFYLSMACIGLIFSGCVPSADPKIDMKPPVYVEQLPAKQINNQPNTGSLFGRGDNPLFSDRKAMNVNDIVTVVISESANQSSTGKRNTNKDSTIGLGGGVFTAGSSPLSHAADQLNKFGDIGFKAGTKNQFSGGALSSRTESFKTTISARIIKVLENGNYFIEGSRELLLNGEKQIVQLSGVIRPYDISNSNEIDSKYIADAKILYKTEGDVDKSTRKPWGTKLMEAIWPF
>NZ_CP053845.1|WP_173031102.1|1062167_1063547_+|phosphate-acetyltransferase
MKTDRIYLLTANFSKIYEIISAKFKNITIFEPIGGFVSIEEAILAFREDREKELIKDIIKEFDRLKKEYEFIAIRGCEAFGNIGKFELNLMLAKHLNAPVYCTENLKAINKNSKLFISSNLDEILTYKQDIITPYKFEKELVDKAKSDKKTIVLPESADERILKASELLIKTQAVNLILLGDESGIKTEAKSLGVNLEGIKFINLDKNEYQDSFASKLYELRKHKGVTLEKTKEMILDKTYFGTMMVQTGLADAMVSGAITTTADTIRPAFEIIKTKPQTPLVSSSFVMCMDEEILIYADCAINPKPDAQTLARIAIDSANTASYFGLEPRVALLSYSTGDSGYGEDVDLVHEALKIAKELEPNLVIDGPMQYDAAIDMQVAKKKLPNSDVAGRANVFVFPNLSCGNIGYKIAQRSANCIAIGPLLQGLKKPVNDLSRGCSVEDIVNTVLITAIQAGGK
>NZ_CP053845.1|WP_173031103.1|1063546_1064743_+|acetate-kinase
MKILVLNSGSSSIKFQLFDMSNNNAIATGLIERIGESNSYAKLKDTKTDNVYEEKLAIKDHHEGLEIMNRLFAVSNILHNLSELDGIGHRIVHGGESFSASARIDSEVIAKIEQNSALAPLHNPGHLAGIRNAMKESGENVPHVAVFDTVFHQSMPEFAYRYALPYDLAKRLHIRKYGFHGTSHHYVTKTAAKMLGMEYENFNAISLHLGNGASVCAVKEGKSVDTSMGLSPLEGLIMGTRSGDMDPAIITYLLNLGELKANEIDTFLNKKSGLLGICGSNDMREVVAKMEHDERAHLAFEMFCYRIKKYIGAYYAVLGRVDALIFTGGIGENAPNTRSKICSELPHLGIKIDHELNFARSSGARCVDDKEAVIKTLIIPTNEELEIALETKRVIENS
>NZ_CP053845.1|WP_173031104.1|1064747_1065098_+|hypothetical-protein
MRKFKHYFFLYGIKYVKKAEATRYKTIPIATETKNVPSAFENKISCVKWAKTITITGDRKVMFSTQKVKKPDGLNSLLQFLQTKFLLTNKSLNFDIFLISLPQFVHLKYSKLIQIS
>NZ_CP053845.1|WP_173031105.1|1065100_1065721_-|hypothetical-protein
MEKIKEKIISSYPFIIFIQRPFKGNGSFLRTLTSASLMVLVCACFFMIIVVIKNMIFYSDFKPLNELTKTTGLVEAANYWLKGEGKLIVKSDKGGYMRYYIDKRDKKIYEPVIGKRVTIYSKTMPLGEDILQLEDENGKIHIEYDYEEELKTPQKDRNLIYTCINIAVFLLLIVWFLNRRDFTKPKFVKPPKVKKKKKAKRDEKQL
>NZ_CP053845.1|WP_173031106.1|1065902_1066334_-|hypothetical-protein
MGILYKKCEVCGNKINKLGCLSNFKFDSEIECKKCRLKYDIFNIKFCLFLSNIIQTCYAIFCLFFSIGLSIYVKDNFDIHWLISVLVFVATWFLSSLFCMLLEWVILLLFVARFVISKDKKIDQNSSKFSNLINKAFNILRKN

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Crispr_ID: NZ_CP053845_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053845_4

1568095-1569213

TypeIII

Consensus_repeat	Method
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT	CRISPRCasFinder
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAATN	CRT
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT	CRISPRCasFinder
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT	PILER-CR
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT	PILER-CR

14 spacers

cas10,csm3gr7,csx10gr5,csx19,csx1,csx20,cas2,cas1,cas6

The CRISPR arrays of NZ_CP053845_4

>merge|NZ_CP053845|4|1568095-1569213|CRISPRCasFinder,CRT,CRISPRCasFinder,PILER-CR,PILER-CR
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAATGCGAAAACGCTGTTTTAACATCGGTAGCCAATACGGTTAGGTTTCAATCCCCTAAAACTGGGGAGCTCGATCGAAATACAATATGCAAGGCTTTTGCTCTACTAAAATCGAGTTGGTGTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAATTAAGATACTTGCAAGCGTATTGCACGCTCAGAAATGAGTTTCAATCCCCTAAAACGGGGGGCTCGATCGAAATGCCGCAACCCGACGGCTCCGTACTAAAGAAAGCGATTTTTCGCGTTTTAATCCCCTAAAACGGGGAAGCTCGAGCGAAATGTTTTACTAGAAATATCAATAGATTCTCTTAACCTATGTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAATTCCTGGCGAAATGGGAGTCGGTTTTCAGGTATTCCAAAGTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAATATGGCTGCCGGGATCGAAATGGGTAAAATCAAAAAAACCCTCTCGTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAATATGTTTCATGTTCTTGCCTACGATATTGTGGGCAGTGACGTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAATCCGAGGTACCAAACTTAGGTGTAATCTACCTACCAAAGGTAGTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAATGTTCTTACAACACTAAATCCAAAGGGCTTGGTTGCACAATGTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAATAGTGCTCGCTGAGGGAAAACGAGAGGCTAAAGAATTTTTTGTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAATCGCGCAAGTGGTATTGATGGGTCTTGCTGCGGTTTTTGGCAAAATGTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAATTTTTCCGGAGTTCAGAGTTTCTCTGGGAGAGGAAACTGAGAGTTTCGTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAATGATTTAGAGGCTTTCAGGACTCGGTAGATGCCACGGTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT

>NZ_CP053845|4|4|1568095-1568286|CRISPRCasFinder
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT	GCGAAAACGCTGTTTTAACATCGGTAGCCAATACGGTTAG
GTTTCAATCCCCTAAAACTGGGGAGCTCGATCGAAAT	ACAATATGCAAGGCTTTTGCTCTACTAAAATCGAGTTGGT
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAATTAAGATACTTGCAAGCGTATTGCACGCTCAGAAATGAGTTTCAATCCCCTAAAACGGGGGGCTCGATCGAAATGCCGCAACCCGACGGCTCCGTACTAAAGAAAGCGATTTTTCGCGTTTTAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT	GTTTTACTAGAAATATCAATAGATTCTCTTAACCTAT
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT	TCCTGGCGAAATGGGAGTCGGTTTTCAGGTATTCCAAA
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT	ATGGCTGCCGGGATCGAAATGGGTAAAATCAAAAAAACCCTCTC
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT	ATGTTTCATGTTCTTGCCTACGATATTGTGGGCAGTGAC
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT	CCGAGGTACCAAACTTAGGTGTAATCTACCTACCAAAGGTA
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT	GTTCTTACAACACTAAATCCAAAGGGCTTGGTTGCACAAT
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT	AGTGCTCGCTGAGGGAAAACGAGAGGCTAAAGAATTTTTT
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT	CGCGCAAGTGGTATTGATGGGTCTTGCTGCGGTTTTTGGCAAAAT
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT	TTTTCCGGAGTTCAGAGTTTCTCTGGGAGAGGAAACTGAGAGTTTC
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT	GATTTAGAGGCTTTCAGGACTCGGTAGATGCCACG


>NZ_CP053845|4|1|1568095-1569213|CRT
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT	GCGAAAACGCTGTTTTAACATCGGTAGCCAATACGGTTAG
GTTTCAATCCCCTAAAACTGGGGAGCTCGATCGAAAT	ACAATATGCAAGGCTTTTGCTCTACTAAAATCGAGTTGGT
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT	TAAGATACTTGCAAGCGTATTGCACGCTCAGAAATGA
GTTTCAATCCCCTAAAACGGGGGGCTCGATCGAAATG	CCGCAACCCGACGGCTCCGTACTAAAGAAAGCGATTTTTCGC
GTTTTAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT	GTTTTACTAGAAATATCAATAGATTCTCTTAACCTAT
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT	TCCTGGCGAAATGGGAGTCGGTTTTCAGGTATTCCAAA
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT	ATGGCTGCCGGGATCGAAATGGGTAAAATCAAAAAAACCCTCTC
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT	ATGTTTCATGTTCTTGCCTACGATATTGTGGGCAGTGAC
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT	CCGAGGTACCAAACTTAGGTGTAATCTACCTACCAAAGGTA
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT	GTTCTTACAACACTAAATCCAAAGGGCTTGGTTGCACAAT
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT	AGTGCTCGCTGAGGGAAAACGAGAGGCTAAAGAATTTTTT
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT	CGCGCAAGTGGTATTGATGGGTCTTGCTGCGGTTTTTGGCAAAAT
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT	TTTTCCGGAGTTCAGAGTTTCTCTGGGAGAGGAAACTGAGAGTTTC
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT	GATTTAGAGGCTTTCAGGACTCGGTAGATGCCACG
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT

>NZ_CP053845|4|5|1568402-1569213|CRISPRCasFinder
	GCGAAAACGCTGTTTTAACATCGGTAGCCAATACGGTTAG
GTTTCAATCCCCTAAAACTGGGGAGCTCGATCGAAAT	ACAATATGCAAGGCTTTTGCTCTACTAAAATCGAGTTGGT
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAATTAAGATACTTGCAAGCGTATTGCACGCTCAGAAATGAGTTTCAATCCCCTAAAACGGGGGGCTCGATCGAAATGCCGCAACCCGACGGCTCCGTACTAAAGAAAGCGATTTTTCGCGTTTTAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT	GTTTTACTAGAAATATCAATAGATTCTCTTAACCTAT
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT	TCCTGGCGAAATGGGAGTCGGTTTTCAGGTATTCCAAA
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT	ATGGCTGCCGGGATCGAAATGGGTAAAATCAAAAAAACCCTCTC
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT	ATGTTTCATGTTCTTGCCTACGATATTGTGGGCAGTGAC
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT	CCGAGGTACCAAACTTAGGTGTAATCTACCTACCAAAGGTA
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT	GTTCTTACAACACTAAATCCAAAGGGCTTGGTTGCACAAT
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT	AGTGCTCGCTGAGGGAAAACGAGAGGCTAAAGAATTTTTT
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT	CGCGCAAGTGGTATTGATGGGTCTTGCTGCGGTTTTTGGCAAAAT
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT	TTTTCCGGAGTTCAGAGTTTCTCTGGGAGAGGAAACTGAGAGTTTC
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT	GATTTAGAGGCTTTCAGGACTCGGTAGATGCCACG
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT

>NZ_CP053845|4|2|1568632-1568976|PILER-CR
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT	ATGTTTCATGTTCTTGCCTACGATATTGTGGGCAGTGAC
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT	CCGAGGTACCAAACTTAGGTGTAATCTACCTACCAAAGGTA
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT	GTTCTTACAACACTAAATCCAAAGGGCTTGGTTGCACAAT
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT	AGTGCTCGCTGAGGGAAAACGAGAGGCTAAAGAATTTTTT
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAATCGCGCAAGTGGTATTGATGGGTCTTGCTGCGGTTTTTGGCAAAATGTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT	TTTTCCGGAGTTCAGAGTTTCTCTGGGAGAGGAAACTGAGAGTTTC
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT	GATTTAGAGGCTTTCAGGACTCGGTAGATGCCACG


>NZ_CP053845|4|3|1569022-1569213|PILER-CR
	ATGTTTCATGTTCTTGCCTACGATATTGTGGGCAGTGAC
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT	CCGAGGTACCAAACTTAGGTGTAATCTACCTACCAAAGGTA
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT	GTTCTTACAACACTAAATCCAAAGGGCTTGGTTGCACAAT
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT	AGTGCTCGCTGAGGGAAAACGAGAGGCTAAAGAATTTTTT
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAATCGCGCAAGTGGTATTGATGGGTCTTGCTGCGGTTTTTGGCAAAATGTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT	TTTTCCGGAGTTCAGAGTTTCTCTGGGAGAGGAAACTGAGAGTTTC
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT	GATTTAGAGGCTTTCAGGACTCGGTAGATGCCACG
GTTTCAATCCCCTAAAACGGGGAAGCTCGAGCGAAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053845.1\|WP_173031509.1\|1563880_1565263_-\|hypothetical-protein	csx10gr5	cls000748_csx10gr5_CAS-III-D	unknown
NZ_CP053845.1\|WP_173031520.1\|1574450_1574645_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053845.1\|WP_173031511.1\|1565804_1567322_-\|hypothetical-protein	cas10	mkCas0133_cas10_CAS-III	gnl\|CDD\|224272
NZ_CP053845.1\|WP_173031508.1\|1562543_1563881_-\|hypothetical-protein	csm3gr7	cd09726_csm3gr7_CAS-III-D	gnl\|CDD\|377130
NZ_CP053845.1\|WP_173031510.1\|1565265_1565808_-\|CRISPR-associated-protein	csm3gr7	mkCas0198_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|377130
NZ_CP053845.1\|WP_173031515.1\|1572144_1572408_-\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	mkCas0066_cas6_CAS-I:CAS-III	gnl\|CDD\|337605
NZ_CP053845.1\|WP_173031516.1\|1572410_1572956_-\|hypothetical-protein	cas6	mkCas0066_cas6_CAS-I:CAS-III	gnl\|CDD\|187890
NZ_CP053845.1\|WP_173031512.1\|1567498_1567828_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053845.1\|WP_173031503.1\|1557846_1558221_-\|hypothetical-protein	csx20	cls000023_csx20_CAS-I:CAS-III	unknown
NZ_CP053845.1\|WP_173031514.1\|1569911_1572101_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187766
NZ_CP053845.1\|WP_173031519.1\|1574171_1574399_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053845.1\|WP_173031522.1\|1574890_1575334_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053845.1\|WP_173031505.1\|1559498_1560287_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053845.1\|WP_173031521.1\|1574686_1574860_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053845.1\|WP_173031506.1\|1560290_1562138_-\|TIGR03986-family-CRISPR-associated-RAMP-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	gnl\|CDD\|274902
NZ_CP053845.1\|WP_173031513.1\|1569642_1569915_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP053845.1\|WP_173031517.1\|1573312_1573588_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|224937
NZ_CP053845.1\|WP_173031504.1\|1558227_1559481_-\|TIGR02221-family-CRISPR-associated-protein	csx1	cd09732_csx1_CAS-III	gnl\|CDD\|187863
NZ_CP053845.1\|WP_173031518.1\|1573584_1573815_-\|TraY-domain-containing-protein	unknown	unknown	gnl\|CDD\|227054
NZ_CP053845.1\|WP_173031507.1\|1562134_1562557_-\|TIGR04423-family-type-III-CRISPR-associated-protein	csx19	mkCas0121_csx19_CAS-III-D	gnl\|CDD\|275216

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_CP053845.1\|WP_173031509.1\|1563880_1565263_-\|hypothetical-protein	csx10gr5	cls000748_csx10gr5_CAS-III-D	4.4e-63	208.0	1.7
NZ_CP053845.1\|WP_173031511.1\|1565804_1567322_-\|hypothetical-protein	cas10	mkCas0133_cas10_CAS-III	2.6e-80	265.1	5.0
NZ_CP053845.1\|WP_173031508.1\|1562543_1563881_-\|hypothetical-protein	csm3gr7	cd09726_csm3gr7_CAS-III-D	3.2e-41	136.4	9.0
NZ_CP053845.1\|WP_173031510.1\|1565265_1565808_-\|CRISPR-associated-protein	csm3gr7	mkCas0198_csm3gr7_CAS-III-A:CAS-III-D	3.1e-19	63.9	0.0
NZ_CP053845.1\|WP_173031515.1\|1572144_1572408_-\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	mkCas0066_cas6_CAS-I:CAS-III	5.6e-20	66.5	0.0
NZ_CP053845.1\|WP_173031516.1\|1572410_1572956_-\|hypothetical-protein	cas6	mkCas0066_cas6_CAS-I:CAS-III	3.7e-22	73.7	0.0
NZ_CP053845.1\|WP_173031504.1\|1558227_1559481_-\|TIGR02221-family-CRISPR-associated-protein	csx1	cd09732_csx1_CAS-III	9.6e-53	174.4	4.3
NZ_CP053845.1\|WP_173031503.1\|1557846_1558221_-\|hypothetical-protein	csx20	cls000023_csx20_CAS-I:CAS-III	3.3e-38	125.5	0.1
NZ_CP053845.1\|WP_173031514.1\|1569911_1572101_-\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	2.7e-73	241.5	2.1
NZ_CP053845.1\|WP_173031506.1\|1560290_1562138_-\|TIGR03986-family-CRISPR-associated-RAMP-protein	csm3gr7	cls000253_csm3gr7_CAS-III-A:CAS-III-D	9e-99	326.8	30.9
NZ_CP053845.1\|WP_173031513.1\|1569642_1569915_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	9.5e-25	81.4	0.5
NZ_CP053845.1\|WP_173031507.1\|1562134_1562557_-\|TIGR04423-family-type-III-CRISPR-associated-protein	csx19	mkCas0121_csx19_CAS-III-D	1.1e-43	143.5	7.0

Protein	Function_ID	Function_description	E-value
NZ_CP053845.1\|WP_173031511.1\|1565804_1567322_-\|hypothetical-protein	gnl\|CDD\|224272	COG1353, COG1353, Predicted CRISPR-associated polymerase [Defense mechanisms].	2.36896e-10
NZ_CP053845.1\|WP_173031508.1\|1562543_1563881_-\|hypothetical-protein	gnl\|CDD\|377130	pfam03787, RAMPs, RAMP superfamily. The molecular function of these proteins is not yet known. However, they have been identified and called the RAMP (Repair Associated Mysterious Proteins) superfamily. The members of this family have no known function they are around 300 amino acids in length and have several conserved motifs.	2.29281e-21
NZ_CP053845.1\|WP_173031510.1\|1565265_1565808_-\|CRISPR-associated-protein	gnl\|CDD\|377130	pfam03787, RAMPs, RAMP superfamily. The molecular function of these proteins is not yet known. However, they have been identified and called the RAMP (Repair Associated Mysterious Proteins) superfamily. The members of this family have no known function they are around 300 amino acids in length and have several conserved motifs.	1.29795e-11
NZ_CP053845.1\|WP_173031515.1\|1572144_1572408_-\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	gnl\|CDD\|337605	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6. Cas6 is a member of the RAMP (repeat-associated mysterious protein) superfamily. It is among the most widely distributed Cas proteins and is found in both bacteria and archaea. Cas6 functions in the generation of CRISPR-derived guide RNAs for invader defense in prokaryotes.	0.0012786
NZ_CP053845.1\|WP_173031516.1\|1572410_1572956_-\|hypothetical-protein	gnl\|CDD\|187890	cd09760, Cas6_III, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex.	1.12264e-06
NZ_CP053845.1\|WP_173031504.1\|1558227_1559481_-\|TIGR02221-family-CRISPR-associated-protein	gnl\|CDD\|187863	cd09732, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as TM1812 family.	2.10654e-37
NZ_CP053845.1\|WP_173031514.1\|1569911_1572101_-\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187766	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	4.82335e-73
NZ_CP053845.1\|WP_173031506.1\|1560290_1562138_-\|TIGR03986-family-CRISPR-associated-RAMP-protein	gnl\|CDD\|274902	TIGR03986, CRISPR-associated_protein, CRISPR-associated protein. Members of this protein family, part of the larger RAMP family, are found exclusively in species with CRISPR systems, in local contexts containing other RAMP (Repeat-Associated Mystery Proteins).	4.1628e-95
NZ_CP053845.1\|WP_173031513.1\|1569642_1569915_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	7.30948e-22
NZ_CP053845.1\|WP_173031517.1\|1573312_1573588_-\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|224937	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning].	6.26317e-19
NZ_CP053845.1\|WP_173031518.1\|1573584_1573815_-\|TraY-domain-containing-protein	gnl\|CDD\|227054	COG4710, COG4710, Predicted DNA-binding protein with an HTH domain [General function prediction only].	1.14399e-06
NZ_CP053845.1\|WP_173031507.1\|1562134_1562557_-\|TIGR04423-family-type-III-CRISPR-associated-protein	gnl\|CDD\|275216	TIGR04423, predicted_protein, CRISPR type III-associated protein, TIGR04423 family. Members of this protein family occur only in species with CRISPR systems, in the context of type III systems that resemble type III-A (MTUBE) and III-B (the RAMP module). It occurs in several species of Prevotella, Helicobacter, Campylobacter, and Bacteroides.	1.62094e-14

>NZ_CP053845.1|WP_173031512.1|1567498_1567828_-|hypothetical-protein
MDKILVAVAIIAGIFFADETCPMPIEHYPYMVAQVGQDSGEEEQNMLANMMTLLSASMGVKNSLIEGIECEIYGLTEQFKLFSVCSLDRGDKKFRTLGVFNKVIVLNGK
>NZ_CP053845.1|WP_173031511.1|1565804_1567322_-|hypothetical-protein
MAKYLYGVSVQGIQEFIYKTNKLQEIIGASEIVDWLGREFDLDQTLQNTSKIYAIFDKFKKDGLVDQILLNAAGNFRAIVSGKDKLEKIVLNLPKDIMQNAYGITVSQAAVECKDNEEYKNVSYELEKRLKIQRNKPSIPLDTSINLMLLSPKTARATYKIEHEERIDISSSQKREAHKVWFDKNRKNNDKFVELKEFSQISNSKNKIAIIHADGNGLGVLVKRLSDRINFSNLNEITKFSKALDKATKNAFKSAKEKIKEKDYKDSGKIKNIILSGDDMTAVCSADVALEFTKYFIQEFEKLTAQDSAIEGKLTMCAGIAYCNEKYPFHYAVELAEALCSVAKKHSKNIYVKDPNKDIAPSCLMFHNIQSSNFQSWDKFIIDELAVKNEDGFIRFDFGPYYINEKSQAKVDDLLALVKVYSGDDSPKTKLREWLKELGISGKYASNMLDRINEILGNKRDVFDVPLKSLNEKLSSGDLIIEKDGLIKTPIYDVLQILSVSGDIK
>NZ_CP053845.1|WP_173031510.1|1565265_1565808_-|CRISPR-associated-protein
MTLRYELKFFDYWHAGSGLSGGAALDSYVIKDDRGLPYMPGKTIKGLLREMAELFWNQDSIDKCFGKQSNNYGQDSDDTVMGECYFSNAVLEEGVAKEIVSNNLAHNLFEVVSSTRIDENGVAIDRSLRDIEVVVPVVLHGNIDIAQEHVHDMKKAMDMIKRAGLNRNRGLGRCKFVIKG
>NZ_CP053845.1|WP_173031509.1|1563880_1565263_-|hypothetical-protein
MRELVFEITFKSAVILQATSNTQGKIDVLDFIPGSNFLGMTASRYCEFSKPFDIFHSGKVKFGDAYPVIDGKEFFKIPLSYFHEKLDSSKIYNHHLLTDCDFKVFAQLKQIRSGYMSLDGQRLNLTYEYSQKSGYDKENRRSKDSAMYGYEALKAGSVWRFKVSLDDIITKDNEKLIIDTLENSKRLGKSKSSEYGVVSIKFISDSEQQVDKFEPKDDYTYIYAKSRLALVDDNGNPTYDLQYFCGGLSDKNIDYAKTQIRTSNFTPFNMSRGTKDYERLCINKGSVIALKNLTKEQKDSVKNGVGAYLNEGFGEVLINPKFLDMGAVDSAIILKEILDTEKKEDIEIKSDLAKFLKQKEIKRLQILDVAVEVAKFIGMDGEKLKDIPNSQWGAIRAICKTSCEDSIYDDIKEFVNKGVAEYKWRDKKSEILLKGIRGSKNKLQFTQLLSMRFPRIKGEK
>NZ_CP053845.1|WP_173031508.1|1562543_1563881_-|hypothetical-protein
MERFLAHVIIRTNTPLKVGGGDSDLFCDAPVQRDWNGLPMILGTSIAGVLRSAIESEDKKFADEIFGSKDEKNTNKQFGSKLIVSNALLVVNKDGKVCEDLLLDKGSFLSFFDDLPIREHVSINNKGVASEHGKFDEEIVFKGTKFKFSFEFDSLEDDFKKILNTLFDNTLRLGGGGSKGFGKFSVDSIKWGKVYLSSYSSSLNDDVLLNDFTDQKNINERFIKYELSLTPDDFFIFGSGIGDDESDQAPMMEKTIDYEKMPLSDEKILIPASGIKGALSHRTAFHYNKFMLSNNGDYQKVGEENKAVREIFGYKKDGNGGRKGRILISDCFKEFCEDMDTKVFDHVSIDRFTGGAIDGALFQEKTIGVKSYNVKFVIRILVKPPQSMDDDLKRFKDAVNAFENALLDVAEGLLPLGGMTTKGHGFFSGEVIKNGVRMERKNEKN
>NZ_CP053845.1|WP_173031507.1|1562134_1562557_-|TIGR04423-family-type-III-CRISPR-associated-protein
MRKTKDEILNYIKSLDGYEGYIQKLGSKISEDDIFFKRGINVNLQPNEYIYEAHFFSKNENKSILIRQINDSWIVDEVDLSKINLKNEDNLQEFWSKFGLKIKMAQIWEEENDELCEGLPVFKLKKAVFAGFADDEKDER
>NZ_CP053845.1|WP_173031506.1|1560290_1562138_-|TIGR03986-family-CRISPR-associated-RAMP-protein
MITAPYNFVPLNDKVFYPSWADKISHDVPFEDGESGVIELEITAQSPIFIRNHYAVGDTFYEVKTDGGIKKYSTEFCHFKKENGQKEFYIPATTMKGAIRNVLEIMSFSRIRIDEEKHKKYLSVRDMTNRHLLAGIADGCGFLVKQGDEYIIFDCGKVVTVNLQKEKEYESIKKYQYGKDKYEKFGFLNEIKFSEHQNQKKKFITRGTLGGNKKAFLVFTGDIQNKKHEFIFCENQRKIPLDRSVFKNFEKVYFENKNAIDGQFLKDKFEKGNKIPIFYKQEKNGGKITHIGLTQIFKIAYNKTIFEAARQSNTKENGVDLSEAIFGFVKKDKALKGRVYFSHFKSANAQFDQEQECVFGSPKESYYPNYLEQYGKEGVVHSYQTLMDKDAKIRGYKRYPLRKGLLQLSQSDDRNQDVKTKFKPLKQGAVFKGKVVFHNLKKFEIGALLSAITFHGEQDRMHNIGLAKSYGYGKISIKAALINLRFTQDIYIEEFENQMNEFHSDWIKSHQIKELFAMADSTKCKENNVLRYQKLDPKNNNKSINEFAKDKDNKRFLMPYSQDKIEVNTNIYKERENKRNKMKPNSKNPKNKSYNKKPESKSFGNHIDFSLFNKV
>NZ_CP053845.1|WP_173031505.1|1559498_1560287_-|hypothetical-protein
MNKYQNRELHKIFVSFLGSNALSTKGIAIIIMIVVSFAWLPDGLSALFDKIFSGDILKWELKDGTMLCQILGAVLMLYIVIKMIPKKVASVDISIDEEPKKAKALVLFLSQNSRADEDKNLKEIGDFKSNYRMPLISIDYHKDMLEKIILICSDQSLQEKEKFLKCIENIFGKNIVKIIEIKHVDNLEIAKDIYDCLENTYQELKVAKIDEKDIVFDVTGGQKAVSIAGAIFAIPNNRHLQYVSTTDYRVRHYDLTYAQDEH
>NZ_CP053845.1|WP_173031504.1|1558227_1559481_-|TIGR02221-family-CRISPR-associated-protein
MSKILISSIGAGDKRSGNYRLSNYSMDGKIYKDKKFIADVLCEHIKIDKLFLIGTKKSIWDAVYKEFGGSDEDEFKIYEAKENNEVIKYIPVVTEQIDKKLGVSGSKCFIIEYGIDEEQLWSNFNQFLKIFDEITKDDEVYLDITHSFRSLSLMSFVMSEFYANTRDYNLNIGGVYYGMIDIMSENDNIAPIVDLKMFFELLEWSKAIKNLKKFGNGYDLMLLVNKSQQPERIINSYTDFSYALSMSDVSAIQKSIKSLNSQIFDLNYTNNTILKIVSKDIKEFIDIFKKEKISDLQLELAEWYSSNKNYAMSYLTLAEAVLSLVCEQNHKDPLNRDNREDAKNTLVKYAKQRYGDDRKKLAEKYLKINSIRVNIAHKLDQENQRSKSNPRDSVNNLPGYIQSIKNMKKYHFEMDRS
>NZ_CP053845.1|WP_173031503.1|1557846_1558221_-|hypothetical-protein
MKTLFILMNHSLTKEQEKDALENLNIDNFVVISDENWSNIDPSNKSILNSIESYKEKLKEKSKNGDLLLVQGDFGATYAMVNFAKNIGLKPIYATTCRIVTEQLENGRLVIRREFKHERFREYE
>NZ_CP053845.1|WP_173031513.1|1569642_1569915_-|CRISPR-associated-endonuclease-Cas2
MNLIICYDIRSTKRRNKVSNLLESYGLRANYSVFELDIKESDYYLIKSKIAKLIEPKSDKVLFYRVCKTCLAKSESMGEGKIFNPLDTYI
>NZ_CP053845.1|WP_173031514.1|1569911_1572101_-|CRISPR-associated-endonuclease-Cas1
MFDLSLEEIFTQNAYDLALKRLKKSSLGLDDLSIDDICAASFYEDLKDEIFHLSYSPQPLKRAFMPKENKDELRKLAIPSLKDKFIQNILVSELSRYFDKGFSNCSYAYRSGKSYTNAIYRARDFLKTYAIKSDIKDFFENIDHNFLLEILNNHIKDSRITRLIELWIKNGIFSKFDYLPHQKGVHQGDVLSPLLSNIYLNQMDMFLHSKAIDFVRYADDFVIFSASKDNAEQILAELKAFLSTIKLSINEIKTAIYDQNTEFAFLGVNFKGANLSISEEKLLSTLKKLSSQAKKPNIKESIENLNSYIFHLKSIKLKLLSLSQQDRLIRHFDETITNLIRKFIKTTDKRTLVDELVNLEFPYPITLQLKKSKLLSCYKNAKQPRIKSVEDTLEAKKREYLKNFSHSSLVHITTPFYFLALSQGKFVLKEHGKIKHKFPVNQISQIIINADTSISSSVIKECSKKKIPIDFIDEKTNLSYATLFTSNSSITKTAVSQISVVKTKKSLRIAQQFVIGKVRNQINYLKYLNKYHKILDAEIEAMQGILKNFIPTSSSSAELMGYEGTSANSYWQAIAKAIDYKFGFCGRITKGATDTVNSALNYAYAILYSKVLKSIVAAGLSPHVSYLHALDEQKPALVFDLIEEFRTFIVDRAIISMINKNEPFDIKDGLLSVDTRRNITKNVNEKLFAYTTFRSEEIKTQDIITKQAYALKHSILENVKYKPFIARFQ
>NZ_CP053845.1|WP_173031515.1|1572144_1572408_-|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6
MRFGELTDANIDKFEVKFDEFEQNFKFYSFERYSNRQKTKMEFGGLMGEMKVCGLDENSARFLELATLINVGKSTAFGLGKIKVERI
>NZ_CP053845.1|WP_173031516.1|1572410_1572956_-|hypothetical-protein
MIKYLTIGVNGISIKPTHAFIGSTIRGVFGRGLRQAACPYIDASCDSCRYFDKCIYAEFFENISKSPKFILDIDFNSNSFDFKILLFENAVSYLTHIIIAIENMRQIGLGISRQKFYFKNLTINDKTISPQESINSSDHTLVFSPSFSAGDYKITALTPIRIKQKTAWFAQSLILNHSLGK
>NZ_CP053845.1|WP_173031517.1|1573312_1573588_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MKVNFSKNALKELKKLDNSVSIKILKKLKEIEGLDNPRDEGKPLIGNLSGLWRYRVGGYRIICKIKDHELIVLVLGVRNRSDAYDGEFDGV
>NZ_CP053845.1|WP_173031518.1|1573584_1573815_-|TraY-domain-containing-protein
MQISVRLDKDIGTKLERLAKDTKRTKSFYVQEAIKRFLEDMNDYIDAMEELKKIESDSNPQFYTLDEVAKELGVKI
>NZ_CP053845.1|WP_173031519.1|1574171_1574399_-|hypothetical-protein
MVVGVAFEATISSIGSINSDDFYKALKTITIDKFGLIFEYFKDGYHYKFSNDELKLTCPNGNTNLFALLNKIINS
>NZ_CP053845.1|WP_173031520.1|1574450_1574645_-|hypothetical-protein
MKKEYGSAAMKLIGVKTSRIFEVADGIITAAFDKNMNPDKSLDEIIAPLVIDYLVSNIGRSISM
>NZ_CP053845.1|WP_173031521.1|1574686_1574860_-|hypothetical-protein
MQTTIWIDGQKYDVYDKNITSDEKALAGFSGYMSFSGSLLESALKQMANSSMIKQLI
>NZ_CP053845.1|WP_173031522.1|1574890_1575334_-|hypothetical-protein
MEKESNKLELLYRLDKRNPLMVLIDFIKYGFFLLVPALPTAIYYDGWMRILGILGSALLIWLLYSVIFFNYVEIYKDKIVIDRFIFGNQIIKPENIIHCRTFERAFLPAHVEIVQKTQHRKAKMTIIAGLTHKQADEIEAQIDRIIL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP053847

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP053847_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053847_1

243-388

Orphan

Consensus_repeat	Method
AAAAAGAAGTTTTTGTAAGTGAAAAA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP053847_1

>merge|NZ_CP053847|1|243-388|CRISPRCasFinder
AAAAAGAAGTTTTTGTAAGTGAAAAAGAAGTTTTTGTAAGTGAAAATAGACCAAAAAAGAAGTTTTTGTAAGTGAAAAAGAAGTTGTAATAATAAAACTTCTTTTTATGGTATACTTTTGAAAAAGAAGTTTTTGTAAGTGAGAAA

>NZ_CP053847|1|1|243-388|CRISPRCasFinder
AAAAAGAAGTTTTTGTAAGTGAAAAA	GAAGTTTTTGTAAGTGAAAATAGACCA
AAAAAGAAGTTTTTGTAAGTGAAAAA	GAAGTTGTAATAATAAAACTTCTTTTTATGGTATACTTTTG
AAAAAGAAGTTTTTGTAAGTGAGAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053847.1\|WP_173032049.1\|390_1380_+\|replication-initiation-protein	unknown	unknown	gnl\|CDD\|376444
NZ_CP053847.1\|WP_173032050.1\|1908_2268_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053847.1\|WP_173032052.1\|3198_3441_+\|type-II-toxin-antitoxin-system-HicA-family-toxin	unknown	unknown	unknown
NZ_CP053847.1\|WP_173032058.1\|6501_6942_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053847.1\|WP_173032054.1\|4173_4737_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|349760
NZ_CP053847.1\|WP_173032056.1\|5031_5295_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053847.1\|WP_173032051.1\|2296_2812_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053847.1\|WP_173032053.1\|3533_3890_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|374224
NZ_CP053847.1\|WP_173032057.1\|5458_5716_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053847.1\|WP_173032055.1\|4736_5009_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP053847.1\|WP_173032049.1\|390_1380_+\|replication-initiation-protein	gnl\|CDD\|376444	pfam01051, Rep_3, Initiator Replication protein. This protein is an initiator of plasmid replication. RepB possesses nicking-closing (topoisomerase I) like activity. It is also able to perform a strand transfer reaction on ssDNA that contains its target. This family also includes RepA which is an E.coli protein involved in plasmid replication. The RepA protein binds to DNA repeats that flank the repA gene.	6.53409e-41
NZ_CP053847.1\|WP_173032053.1\|3533_3890_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|374224	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	5.08131e-10
NZ_CP053847.1\|WP_173032054.1\|4173_4737_+\|hypothetical-protein	gnl\|CDD\|349760	cd02042, ParAB_family, partition proteins ParAB family. ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in Rhizobium etli symbiotic plasmid. This operon is involved in the plasmid replication and partition.	6.226e-07

>NZ_CP053847.1|WP_173032049.1|390_1380_+|replication-initiation-protein
MTKEITKNLSNRSVVVQSNSMINSKYELTETQQKLILLAIAQIKTADEKFFRYSCTVSELEQKLGVKLNETRLKDLAKDILKKPLEIKEQNKWIGCNWFSAFIYHIDQGRFEFEISPTLTPYLLQLKKEFTTYNIEQAIKFSGKYTTRFYQFMIQAQHQRDKKRVFVLEELYELLQLPKTLRNFAKFRQYVIEPSIEEINKKSDIQVDYEVTKKIRKKAIEITLRFDFKERLVAQTAQAIEAKELNKYKGKEFSYFGALFKIEYLQINEEKNRIEAIFIDPRDDQKARADFDSLEHLDRAIREAKELKAEMKSNPEKYKKKDRDVSGLF
>NZ_CP053847.1|WP_173032050.1|1908_2268_+|hypothetical-protein
MDNDKQELYSTMIRDLLGISIPSEKINEKVEIELHGFIDKVSRCSEITSKSFEYLVSILPVLFASTSLLLDAHDVLEAVAEFEGELQGAKKGFIGCYFAIKNQYAQRIEGAVAGIEVFK
>NZ_CP053847.1|WP_173032051.1|2296_2812_-|hypothetical-protein
MKNTIKSFMVLCLLLPLSLLADNCKKHSPELYVDKQDIIQNRMFYFHEECKNKKDQVACECFDNTFGEIKKRCNAGEAKSCYNLYLVNLSNEDKLDFLKYAKKACDSEINPENLESAIEACGAVATVYLLKYRSEIVIELKNKYKDTTIQYLDKLCKITKKDCDEMKKNLF
>NZ_CP053847.1|WP_173032052.1|3198_3441_+|type-II-toxin-antitoxin-system-HicA-family-toxin
MSNKIHKIIDKMRRSPSSISFNEVQDILVYLGYELSNNAKGSHMIFRKPGYDHVNIPFAKPIKKHYIKKVLELYEEESID
>NZ_CP053847.1|WP_173032053.1|3533_3890_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MTPQAKNKEYYLNLNYSMIINKEDDEFVAYYKEYPKITGCGDNEIEAIEDLKEAFSCLLDVLIAEGEEIKEPAPVEKKVRVNVILPEKLLKSISELTNNRSVFLSKAAKYAIENKIAL
>NZ_CP053847.1|WP_173032054.1|4173_4737_+|hypothetical-protein
MTLAVLQLKGGVGKTPLSFSIAKDLNLKWQSNDDSVVPQFYPKGKILDRCVFEEDTVYDFGGFASAGVLEILKQCDFIIVPITPNPNSIKRAANTLSQIKPLGRKTIGVITNISSQKELDETVATIKAVNIVCTKFFVLKNSRIFENAMTNGLSFIELYNENNLAKRQYQSFIDMYQKIINYIKDNK
>NZ_CP053847.1|WP_173032055.1|4736_5009_+|hypothetical-protein
MAKLELDLSSNELEELSTASFKEQDKAQEIKKTGGRPKSANPANKRTTMFLSSDELAFLDEMGYLTRTNRTQYLRSIIREKMESINKGAV
>NZ_CP053847.1|WP_173032056.1|5031_5295_+|hypothetical-protein
MTNAIILQAKDGFTLSSDIINAMKQLFGEKINVIELDGDMVEALQSEISQADTIKLKRTVEKLDKGELKFYTENEFSQQLAKRGYRE
>NZ_CP053847.1|WP_173032057.1|5458_5716_-|hypothetical-protein
MENNSKIIDTIAKQIEIIKIKILIFVAGFGGAWVFITANYSKIDFLVIISIAFLMLFGVGIATNLTRLSGLYKELEKIKDSNGSN
>NZ_CP053847.1|WP_173032058.1|6501_6942_+|hypothetical-protein
MAKFYVVKSELIGAFKLLYESIERSNSFEQISKTIGDFFKEVEKINNPKNNRPNKQIDSIRTYFRKNQKDKRSQEAVVEKSIRKIRKKKPNYRDFSEQIVVWREQGHSYPQICRLLQAQTGIKISDQTIARFLKRRANEQKNRVKQ

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP053847_1	1.1\|269\|27\|NZ_CP053847\|CRISPRCasFinder	269-295	27	NZ_CP053847	Campylobacter sp. CCUG 57310 plasmid pCORI-2, complete sequence	269-295	0	1.0
NZ_CP053847_1	1.2\|322\|41\|NZ_CP053847\|CRISPRCasFinder	322-362	41	NZ_CP053847	Campylobacter sp. CCUG 57310 plasmid pCORI-2, complete sequence	322-362	0	1.0
NZ_CP053847_1	1.1\|269\|27\|NZ_CP053847\|CRISPRCasFinder	269-295	27	NZ_CP053847	Campylobacter sp. CCUG 57310 plasmid pCORI-2, complete sequence	248-274	6	0.778
NZ_CP053847_1	1.1\|269\|27\|NZ_CP053847\|CRISPRCasFinder	269-295	27	NZ_CP053847	Campylobacter sp. CCUG 57310 plasmid pCORI-2, complete sequence	301-327	6	0.778
NZ_CP053847_1	1.1\|269\|27\|NZ_CP053847\|CRISPRCasFinder	269-295	27	NZ_LR134422	Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 13	33338-33364	6	0.778

1. spacer 1.1|269|27|NZ_CP053847|CRISPRCasFinder matches to NZ_CP053847 (Campylobacter sp. CCUG 57310 plasmid pCORI-2, complete sequence) position: , mismatch: 0, identity: 1.0

gaagtttttgtaagtgaaaatagacca	CRISPR spacer
gaagtttttgtaagtgaaaatagacca	Protospacer
***************************

2. spacer 1.2|322|41|NZ_CP053847|CRISPRCasFinder matches to NZ_CP053847 (Campylobacter sp. CCUG 57310 plasmid pCORI-2, complete sequence) position: , mismatch: 0, identity: 1.0

gaagttgtaataataaaacttctttttatggtatacttttg	CRISPR spacer
gaagttgtaataataaaacttctttttatggtatacttttg	Protospacer
*****************************************

3. spacer 1.1|269|27|NZ_CP053847|CRISPRCasFinder matches to NZ_CP053847 (Campylobacter sp. CCUG 57310 plasmid pCORI-2, complete sequence) position: , mismatch: 6, identity: 0.778

gaagtttttgtaagtgaaaatagacca	CRISPR spacer
gaagtttttgtaagtgaaaaagaagtt	Protospacer
******************** ..* .

4. spacer 1.1|269|27|NZ_CP053847|CRISPRCasFinder matches to NZ_CP053847 (Campylobacter sp. CCUG 57310 plasmid pCORI-2, complete sequence) position: , mismatch: 6, identity: 0.778

gaagtttttgtaagtgaaaatagacca	CRISPR spacer
gaagtttttgtaagtgaaaaagaagtt	Protospacer
******************** ..* .

5. spacer 1.1|269|27|NZ_CP053847|CRISPRCasFinder matches to NZ_LR134422 (Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 13) position: , mismatch: 6, identity: 0.778

gaagtttttgtaagtgaaaatagacca	CRISPR spacer
ctctttattgtaattgaaaatagacca	Protospacer
    ** ****** *************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage