CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP053853	Propionibacterium freudenreichii strain FAM 14217 chromosome, complete genome	3 crisprs	DEDDh,csa3,cas3,WYL,DinG	0	4	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP053853_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053853_1

180542-180636

Orphan

Consensus_repeat	Method
GTGGTCACCTGTGCGGCGTCATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP053853_1

>merge|NZ_CP053853|1|180542-180636|CRISPRCasFinder
GTGGTCACCTGTGCGGCGTCATTGCCGCACAACTGCCCACCTGGCCAGAAACCTCTACCCCGAGCCCCTTGAGTGGTCACCTGTGCGGCGTCATT

>NZ_CP053853|1|1|180542-180636|CRISPRCasFinder
GTGGTCACCTGTGCGGCGTCATT	GCCGCACAACTGCCCACCTGGCCAGAAACCTCTACCCCGAGCCCCTTGA
GTGGTCACCTGTGCGGCGTCATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053853.1\|WP_013160082.1\|173910_174630_-\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176506
NZ_CP053853.1\|WP_013160083.1\|172993_173812_+\|shikimate-dehydrogenase	unknown	unknown	gnl\|CDD\|234703
NZ_CP053853.1\|WP_013160075.1\|182833_183805_+\|NAD(P)H-quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|176180
NZ_CP053853.1\|WP_036941495.1\|180691_181897_-\|IS481-like-element-ISPfr5-family-transposase	unknown	unknown	gnl\|CDD\|366234
NZ_CP053853.1\|WP_013160081.1\|174626_175310_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|181298
NZ_CP053853.1\|WP_041703995.1\|176537_176798_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053853.1\|WP_036942932.1\|168300_170757_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226957
NZ_CP053853.1\|WP_036943006.1\|186057_187584_-\|LCP-family-protein	unknown	unknown	gnl\|CDD\|224235
NZ_CP053853.1\|WP_155269328.1\|170910_171747_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381297
NZ_CP053853.1\|WP_036943004.1\|183978_185403_+\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|235434
NZ_CP053853.1\|WP_036942947.1\|188881_189379_-\|thiol-peroxidase	unknown	unknown	gnl\|CDD\|179055
NZ_CP053853.1\|WP_013160080.1\|175501_176590_+\|VanZ-family-protein	unknown	unknown	gnl\|CDD\|377417
NZ_CP053853.1\|WP_036942942.1\|182146_182584_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053853.1\|WP_013160070.1\|189711_190359_+\|CueP-family-metal-binding-protein	unknown	unknown	unknown
NZ_CP053853.1\|WP_013160087.1\|167422_168301_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224059
NZ_CP053853.1\|WP_036942950.1\|190420_191542_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP053853.1\|WP_036943008.1\|191706_192384_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP053853.1\|WP_013160077.1\|177766_180355_+\|LCP-family-protein	unknown	unknown	gnl\|CDD\|224235
NZ_CP053853.1\|WP_060762132.1\|187967_188714_+\|NAD-dependent-protein-deacylase	unknown	unknown	gnl\|CDD\|234777
NZ_CP053853.1\|WP_013160084.1\|171857_172907_-\|beta-propeller-fold-lactonase-family-protein	unknown	unknown	gnl\|CDD\|225333

Protein	Function_ID	Function_description	E-value
NZ_CP053853.1\|WP_013160082.1\|173910_174630_-\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|176506	cd08563, GDPD_TtGDE_like, Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.	2.44995e-102
NZ_CP053853.1\|WP_013160083.1\|172993_173812_+\|shikimate-dehydrogenase	gnl\|CDD\|234703	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed.	9.31165e-61
NZ_CP053853.1\|WP_036941495.1\|180691_181897_-\|IS481-like-element-ISPfr5-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	4.45829e-20
NZ_CP053853.1\|WP_013160081.1\|174626_175310_-\|SDR-family-oxidoreductase	gnl\|CDD\|181298	PRK08219, PRK08219, SDR family oxidoreductase.	1.09359e-113
NZ_CP053853.1\|WP_013160077.1\|177766_180355_+\|LCP-family-protein	gnl\|CDD\|224235	COG1316, LytR, Transcriptional regulator [Transcription].	1.12053e-31
NZ_CP053853.1\|WP_155269328.1\|170910_171747_-\|aldo/keto-reductase	gnl\|CDD\|381297	cd19071, AKR_AKR1-5-like, AKR1/2/3/4/5 family of aldo-keto reductase (AKR) and similar proteins. Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. The family includes AKR1A/B/C/D/E/G/I, AKR2A/B/C/D/E, AKR3A/B/C/D/E/G, AKR4A/B/C, AKR5A/B/C/D/E/F/G/H, and similar proteins.	1.40142e-116
NZ_CP053853.1\|WP_036943006.1\|186057_187584_-\|LCP-family-protein	gnl\|CDD\|224235	COG1316, LytR, Transcriptional regulator [Transcription].	2.94337e-38
NZ_CP053853.1\|WP_013160075.1\|182833_183805_+\|NAD(P)H-quinone-oxidoreductase	gnl\|CDD\|176180	cd05276, p53_inducible_oxidoreductase, PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction.	7.73578e-158
NZ_CP053853.1\|WP_036943004.1\|183978_185403_+\|argininosuccinate-synthase	gnl\|CDD\|235434	PRK05370, PRK05370, argininosuccinate synthase; Validated.	0
NZ_CP053853.1\|WP_036942947.1\|188881_189379_-\|thiol-peroxidase	gnl\|CDD\|179055	PRK00522, tpx, thiol peroxidase.	4.97723e-95
NZ_CP053853.1\|WP_013160080.1\|175501_176590_+\|VanZ-family-protein	gnl\|CDD\|377417	pfam04892, VanZ, VanZ like family. This family contains several examples of the VanZ protein, but also contains examples of phosphotransbutyrylases.	1.13032e-20
NZ_CP053853.1\|WP_036942950.1\|190420_191542_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	7.72925e-49
NZ_CP053853.1\|WP_036942932.1\|168300_170757_+\|ABC-transporter-permease	gnl\|CDD\|226957	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane].	7.57226e-18
NZ_CP053853.1\|WP_013160087.1\|167422_168301_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224059	COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms].	8.56637e-108
NZ_CP053853.1\|WP_036943008.1\|191706_192384_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	2.63587e-79
NZ_CP053853.1\|WP_060762132.1\|187967_188714_+\|NAD-dependent-protein-deacylase	gnl\|CDD\|234777	PRK00481, PRK00481, NAD-dependent deacetylase; Provisional.	4.27408e-120
NZ_CP053853.1\|WP_013160084.1\|171857_172907_-\|beta-propeller-fold-lactonase-family-protein	gnl\|CDD\|225333	COG2706, COG2706, 3-carboxymuconate cyclase [Carbohydrate transport and metabolism].	8.63447e-34

>NZ_CP053853.1|WP_013160077.1|177766_180355_+|LCP-family-protein
MADDDVQRPRRVRRAADDAHSATPPASGTPGTPRRIWARPQPEDPPTTPPAAPEAPAAPSTPADPTPTGGSSRRGMGTNEPHVSKWGTRESTPEPTASATPRRSWSRRRAESTGDQPPVGSGHPTGEGTGPRHARRSAPIHKPVESDLSHPDAPRSTAAADATTPSPAPAEQAPTRPAPPAAATPRGRQHDAPTPRASAPDKHVASRRTPATTPPAAATPHSAAPHSPAPHDPTPPSPTTHAPTPGTPTAPRSERGANLTLGGEPLGEHTAFLHAPDYRHANAAARAAARERARRAAAGTEPAAHDGELFDVEQVGLREPPPPPPEPEPASLRSRFAAFTERSDDTGSHGFGWTMLRTTLGSLIPGAGLIGTRLTMIGTLLFMMTVVFGSGVILAAVVHPPALMATVMNSVGLTAIGIMLVAVTIIWMAIVAGTYLVTRPRRMKRWQRIAGAIVVFLMAALVGSVSSVGAAYAFESAIVVSDVFGNSKTRSQTRPLGDWANKDRVNILLLGGDSGADRDEDLGLRTDTVMLASINTHTGNTVFIQLPRNLENVPFPAGSDLAKVYPNGRVWDRSSGTEDNYMLNAVWNEVPLEHPELFRNTDQPGADATKLAVSGITGLTVDYYAMINIDGIQALVDAMGGVVVNINFPIAKGGHVDGYGDEECGVDGNLSVGPDQKLDGADAMWYARSRCNDPDYDYGRMRRQSCLVNAIIRQANPQTMLTRYEAIAAAGKNMMSTDIPESLLDDATNLALQVKDAQVSRVVFSQAIGTAPQVGDINPGNPDYNAIRNRISGAITASDNGTTPSAPASASSSPMATGSAGSASSVASAAGSGSTSASAAGAAATPSGTAENMSGACDYHPN
>NZ_CP053853.1|WP_041703995.1|176537_176798_+|hypothetical-protein
MVVGPLVATRVLQLFIGEPVSGALNALATLVIVLAVVMVVPTRSHRSLSGWLTGADMVDSRSVTPTVAGPGAGDTGVGGSGAADPA
>NZ_CP053853.1|WP_013160080.1|175501_176590_+|VanZ-family-protein
MLFLPYVVWSFHRFGQLSFRRIIGWAAVCVYFTGLAVYTLVPFPEDPQAFCASTHVGYNLHPLEFITDIRTQTAGMGLRSALTSAVVLQVVFNVVLFVPLGVLLHRYFRRGAITSTLIGLIMSVCIETTQYTGFFGLLPCAYRVADVDDVITNTAGTLIGALIAPLLLFWMPASRTLTSTRLVARPVTSMRRWVGMVVDGFLFYLIAASSSIAVLVAGRLLSWWPVEAEPEWISPAGDVVALLMVFVIPSLTGRGGSLGQRVVWLTPRWPAAAGSGDGSGGAVGADSSGGTVGGDWPDGAAPDGGQMGGGTYRGGSLDSGSLGSGLPSSGLSDGRTLANGPLAFAGGRGPAGGHAGAPAVHR
>NZ_CP053853.1|WP_013160081.1|174626_175310_-|SDR-family-oxidoreductase
MAERRAVLITGATRGIGRAIADELADDWHVLVGGRHPDQVRKVVQALPSAEPFIADLTDAGAMQAAVEQIGHLDAVVHSAGAVVMGPVSELSRQDWRDLYEINVVAVADLTAELLPKLREAHGQVVTINSGSGFHTGPGQTCYAATKHALVAFTDGLREEERGVVRVTSVHPGRVDTDMQVDIQRQLGAQYQPERYLQPADVARAVELALTMRPGANVDTVSVRPAL
>NZ_CP053853.1|WP_013160082.1|173910_174630_-|glycerophosphodiester-phosphodiesterase
MTAVWAHRGASAAAPENTLPAFQAAATLGADGVELDVQRTRDGQLVVCHDETIDRTSNGVGNLADYTLSQLKEFDFSAGHPEFTNVAIPTLAEVFDVLGPTGLMINIELKNSVVPYEGMEAQVLALVHAAGWDDKVFYSSFNHRSMRRLAERDYPVGLLYDSVLWRAAKYAAELGASALHPSGRAVRVNPGVVRAAHKRGLSVNVWTIDKPAQIQALLDLEVDAIITNVPDVALGVRDA
>NZ_CP053853.1|WP_013160083.1|172993_173812_+|shikimate-dehydrogenase
MTHHAAVIGSPIAHSLSPVLHRAAYQQLGLHDWEYDAIEVTPDTLGEFIASRDNSWAGLSVTAPLKEALIEFGRPDQQSSELQSANTLIFGHPNRLFNTDVTGLRDAMASYDVIMPGTAVIMGAGATARSAISTLVRLGCRVIRVVARDAGRAHASLDRVAALYGTDLQIVDWSGFDALGADSADVLISTAPVQYTPEEAAQLAAVSQVVFDIVYQNYPTNLSRAAIKAGRVSVDGVDLLVHQAIDQVRLMTGEEPLAEPLIEVCRAELAKR
>NZ_CP053853.1|WP_013160084.1|171857_172907_-|beta-propeller-fold-lactonase-family-protein
MSTQLCYVSGRRDGLITTVRFDDKAETAEVVSRLNLGPKPMPLELNRERRLLRVATGADPLRVSTLKLLPDGSCQVLSEVNCPLSATYLSFTPDDRMAFVVSYHASRLAWAPVWDNHLIDDSAWHVEQVGEQPHCVEPSPDGRHVYVVELGANRVQGFRVSDGELVADEQIGVQFEHGTGPRHLVFDASGEHGYLIEELGGHIVHLTRDPDSGRLTVAERVPYSDRADDLRPGVHVPSGSTPSLDDQTLRHWGAELALDPQRHWIVASERRASTLNLQALNDDGSFGARLDHVPTEKQPRGMGLIGDHHVIAGAELGDTATIYRVDDQLEPVAEVEGLGGPVWFASIGS
>NZ_CP053853.1|WP_155269328.1|170910_171747_-|aldo/keto-reductase
MPTTPTPTVELSGGTRMPMLGMGTWPLKGEECRAAVASAIEQGYRLVDTAEAYGNEEAVGKAVREAGPDRAEIFVTTKFSKQWHSRKGVHEALEHSLERLGLDYVDLFLMHWPMPGEGSYVDAYRGMVELKEQGLAKAIGVSNFKVHHLDDLITEGMTPEVNQIQLDPSRPRLEVRDFLDNHDIVTEAWSPLGRGADGVLNAPAVLDAAKKHGITPAAAVLAWELNQGIVTIPKSANPEHQRTNLEAIGVELSAQEMKAIDALADPNAKIDDSDKTGN
>NZ_CP053853.1|WP_036942932.1|168300_170757_+|ABC-transporter-permease
MLRQPRQLISAGIAILLGVAFVAATFVFSASLNAGMTKLVAGMVGDAKVVVSPSENTYTPVTQQLTDTVSKVPGITHSKKIVQGSATLRLDGQDNHALISSQPDLSSQTTLFEGTLAKGDGQVTISKTAADAYRLKVGDKVTLANYDDRAFDETVVGIVNAGNDAVAQPLASWVFAPTEQAMTLASTSGYNMVFLYGNGDAGALRDAVQAAAGVSDAQLTVRTGQDEVQAAMKQMTGSTNSIQYVLLGFAAIALFVGIIVIANTFSILVAQRVRQLALLRCVGATRNQVFGMVFGEAAVLGLVGSAAGILAGFGLAAALIPLASKGAQIPLEFAISPAAVIVPLVVGVLITLAASISPARKATRVAPLAAMRPELAVSKAKRLGVVRAIIGIVLVVGGAAMLALGIVRAKPDTGVGGLAIAIAGGLLSFIGVLLVGRGLIPALARLIGAPLAKSSVSGDLAVGNTRRNPGRAAATANALLVGVTLITLLTVGASTSQASLDRYLSATYPQDAVVSAAKGIDEQALTRIKATDGVQDAALVPSTTTEVSSRDHAAQQRPVMGVDNTAAHLTHFPQRYENLDDNTVRTSDTSVHNGETVTIKGASGTTVQLTAKVSNDYSPSLVVSTTVLSKLDPGAAETAWVQYKSGVNVNTVTTDLGKAVGGLGQVSIDSGAQMRAQFGQMIDIVLAVAVGLLAVAVAIAVIGVANTLGLSVLERTQEIGLLRALGMTRRQVRSMISWEAVMIAVVAAALGLALGVAYGLIGAKVMLGSITSTPFVAGLPWVRLAAIGVIAVAAGWLASLIPASRANRISPSAALATE
>NZ_CP053853.1|WP_013160087.1|167422_168301_+|ABC-transporter-ATP-binding-protein
MTTMTQPTTAAVRTVHLTKIYGQGDTQVTALNDVSVEFIRGQFTAIMGPSGSGKSTLMHCAAGLDTPTSGQVFIGQVDATSLSDTNLTLLRRERVGFVFQAFNLLPTMTAEQNILLPLKLAHSKPDRQWLDTIVKVLGLQDRLSHRPAELSGGQQQRVAVARALITRPEVIFADEPTGALDSAASNELLDFLSRSVHELGQTIVMVTHDAHAAGFSDRVLRLADGRIVSDEPVNHPIAGQTPVPTTGFTSGAVAGTPNFAPAPGSAPQMGAANPQRPDDAPDAGLKRQAGDN
>NZ_CP053853.1|WP_036941495.1|180691_181897_-|IS481-like-element-ISPfr5-family-transposase
MSKNHVAVMSVVSGSMSVAQASREFGISRQHVYRLVARYRAEGPEGLEPRSRAPRSHPNQTPARVRERIIALRRQLVGEGLDAGPLTIAWHLERDGVRPPAHSTIRRILHQAGLVRPEPDKRPRSSFIRFNADLPNQTWQSDVTHWQLADGTPADIISWLDDHSRCLLHISAHRAVSVHTVLDTFTATIALHGPPASTLTDNGIIYTTRLLGGPNSGPNRFELFLEAMGIVQKNGGPHRPTTQGKIERFHQTLKRRLNAKPDAHDIADLQTVLEDFQDLYNHRRPHTSLARRTPGDVYRASPKDRPDPTGPRPVRDSDYRVKHVRVPRAGVITLRHHGAPHALGVGAAHAGISTVITLDATTVTVIDPTTGQILSTHHIDPDRRYWPNTQRPPGRWPKHDP
>NZ_CP053853.1|WP_036942942.1|182146_182584_-|hypothetical-protein
MSSYILRPRIPRRAFVLGSAATVVGLVLVVIGLVQNWAILAIIVLAALLAVGLLTLLMVAYSMVNHRIHIDLDAKGYRVHGPGMDRRGTWAKVTRVAVTPDGSRLMIASGPVKRTYISCPKGGDDPAMQALIKEISAHLPEHSRR
>NZ_CP053853.1|WP_013160075.1|182833_183805_+|NAD(P)H-quinone-oxidoreductase
MHAITVDEPGGVDVMSWAEVPIPDPGPGEVLVRTQAAGVNRGDVLQRQGHYPPPAGITDIMGMEALGVIEKLGDGVEGHQVGEQVLALVSGGAYAEFFVVPAGQLLKLPAGIDPLAAAGLVEVAATVVSNFDRVHLSAGETVLIHGGAGGIGTLAIQYAKALGAHVIVTAGSAKKLAYCRKLGADEGFDYHDDWEPQVMMATQDRGVDVILDIVGAKYLEANVRCLADDGRLVIIGMQKGTKGTLNIAVLLNKRGTVTATSLRFRSLASKAAICRRVEEAIWPLLSSGAIKPGNQTQVPMAHASKAHELLESGDNTGKIILVV
>NZ_CP053853.1|WP_036943004.1|183978_185403_+|argininosuccinate-synthase
MSKVLTSLPVGQRVGIAFSGGLDTSCAVAWMREKGAIPCTYTADIGQYDEPDIASVPGRAGQYGAELSRLVDCRESLVEEGLSALACGAFHVQSAGRAYFNTTPIGRAVTGTLLVRAMNDDNVSIWGDGSTYKGNDIERFYRYGLMANPSLRIYKPWLDEDFVSELGGRDEMSVWLQKRNLPYRDSKEKAYSTDANIWGATHEAKTLEHLDVSLETVEPIMGVKFWDPSVTIDTEDVTIGFEQGRPVTINGKKFDSAVDLVLEANKVGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLFIAYERLVNAIHNEDTIINYRNEGMRLGRLLYEGRWLDPQSLMIRESIQRWVASVVTGEVTLRLRRGEDYTIVNTDGPAFSYHPERLSMERVQDAAFGPLDRIGQLTMRNLDISDSRSRLEQYASQGQLTGGEAAKLVGALEPGKASEIADHPEHAGTSHATPLDNAAMETGAD
>NZ_CP053853.1|WP_036943006.1|186057_187584_-|LCP-family-protein
MALVLFVVVAAAGIYIWRANAGIKRSGAIADKTSQSSDLDLLVMGLDSRVDVNGNALPSDIYDALHSGDASDGGLNSNVLMYVHVPADGSQASVFAIPRDDYVDFPGCPDGVCKGKIKEAYGYAADAKTQELDKQGKTGQDAYQQARDAGRAAEVRTVEQFLGVEIDHFIEVTMVAFFQIAQVVQPITVCVNEKTVDTYSGADFKAGEQDINAEQAMAFVRQRRDTDNPDLAFTDLDRSRRQQAFIASLLVKLKKTNLLTNPGQLDKLVQVAQQNTVLDKNLKISQLTSLATSLEGSKLNFYTLPVESFGTADDGAAINVVDKAKIQGIVRSILHPGQSASPSASASASGSASYSPTYGMGATVSVMNESGVTGAAASLVGQLTGFGFTAGQATNGADILQESSVSYGSAVAGQAKQLAQQLGGLSANADSTLGANAVVVHMGTGFTGWPSASPSAASSAASTGGSSVSPSASSTAIPSAVDANSGGQSGPEPSQLTQISGGGIPCVK
>NZ_CP053853.1|WP_060762132.1|187967_188714_+|NAD-dependent-protein-deacylase
MSADQLSRILAPADHVVFFGGAGVSTESGIPDFRSATGLYKTQSGGEFPPEYMLSHSCWADHPEDFYAFYRKNMLHPEAKPNAAHYALARLEKAGRLTAVVTQNIDGLHQMAGSQKVFELHGLVLRNHCVDCHRSYPVEAIEQSTGIPRCTVCNGIIKPDVVLYEEGLDPDVMDGATRAIMAADVLIVGGTSLNVYPAAGLLEYYRGDKLVLINKSATPADNRAQLVIHDSIGKVLGQAVDEVLGDKA
>NZ_CP053853.1|WP_036942947.1|188881_189379_-|thiol-peroxidase
MSTTAFQGTPVHTVGELPAVGSQAPAFELVGKDLSTITLKSLRGRRVVLNIFPSLDTGVCATSVRTFNKLAAGLDNTTVLAVSKDLPFAAERFCVAEGIENVVPASAFRKHSFSNYGVLMTDGPLAGLLARSVVVIDENGTVVYNQLVPEIGNEPDYDDAVAALK
>NZ_CP053853.1|WP_013160070.1|189711_190359_+|CueP-family-metal-binding-protein
MSRRFATTLAASALSLVVLAGCSTATAGPSSGTPSGTVTAGAASNTSSTAANGSVDVAKAGVEELKGADARTLVDKLEATPLSQRRTDLRASVRADELQLSDTSGNKASVKMPADQFYLSFAPYVNKTHDCTYHSLTTCKAELGNKQMHVTITDAAGATVIDQDLTAADNGFIGVWLPRNITGTLTVSYDGKSASQQISTAKADDPTCLTTLHLA
>NZ_CP053853.1|WP_036942950.1|190420_191542_-|HAMP-domain-containing-histidine-kinase
MLTRRSIARRFLTGAAVVVGVAVVTIFVVDALVSPAIFHAHLMQADLSNPETVLRHVEEGMRSSNMIALAVAILIAVLAALLVSLYLATRVSASLAPLAAAARQVAAGDYTARVDAGPLGAEFDELTEAVNAMSQRLASVEQSRTRLFSDLAHEMRTPIAVVQAQLEGIEDGVVGVEDSIPVLRAQAERLTRLSSDIGLLSQAQEHALRYEFAPGEVASVMRGCVDDMALRYREAGVQLTLDVATHARAQLDTARFAQVITNLLANALNATVSAGRGRTGDRGGHVHVGVRRHGNEVAVQVRDDGVGISPEELPHVFDRFARVGPARDRSSGGFGIGLTVARAIMSAHHGRISADSPGPGRGATFTVTVPVLH
>NZ_CP053853.1|WP_036943008.1|191706_192384_-|response-regulator-transcription-factor
MIVEDEHSLATVMAGYFTRNGYRAEVVGDGLGAVAAARRLDPSVVILDLGLPSLDGVEVARRIRTFSDCYILMLTARADEVDELIGLSVGADDYLTKPFSPRLLIARVQAMQRRPRSAITPPDEQPLRIGELTIDPAAREVQLGTREIALTRTEFDLLAHLARNPRRAISRDELIEAVWGVGWSGDDQLVDTHIGHLRKKLGDSAANARFIETVRGVGYRMGQGR

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Crispr_ID: NZ_CP053853_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053853_2

784284-784448

Orphan

Consensus_repeat	Method
GCCAAGAAGCCGGCAGCGAAGAAG	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP053853_2

>merge|NZ_CP053853|2|784284-784448|CRISPRCasFinder
GCCAAGGGTCCGGCGCCGAAGAAGCGCACCACCCGCAAGGCGACGGCGAAGAAGGCGGCAGCTGCCAAGAAGCCGGCGGCCAAGAAGCCGGCAGCGAAGAAGCCAGCAGCCAAGAAGACGGCGTCCACGGCCAAGCCGGCAGCCAAGAAGCCGGCGGCGAAGAAG

>NZ_CP053853|2|2|784284-784448|CRISPRCasFinder
GCCAAGGGTCCGGCGCCGAAGAAG	CGCACCACCCGCAAGGCGACG
GCGAAGAAGGCGGCAGCTGCCAAG	AAGCCGGCGGCCAAGAAGCCGGCA
GCGAAGAAGCCAGCAGCCAAGAAG	ACGGCGTCCACGGCCAAGCCGGCA
GCCAAGAAGCCGGCGGCGAAGAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053853.1\|WP_026138135.1\|797631_798957_-\|ISL3-like-element-ISPfr2-family-transposase	unknown	unknown	gnl\|CDD\|376574
NZ_CP053853.1\|WP_097807466.1\|772786_775390_+\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274006
NZ_CP053853.1\|WP_013161895.1\|776047_777052_+\|dimethyl-sulfoxide-reductase-anchor-subunit	unknown	unknown	gnl\|CDD\|225839
NZ_CP053853.1\|WP_048733646.1\|771441_772653_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|224068
NZ_CP053853.1\|WP_013161883.1\|794249_795701_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|236830
NZ_CP053853.1\|WP_051733962.1\|769487_769820_+\|flp-pilus-assembly-TadE/G-like-family-protein	unknown	unknown	gnl\|CDD\|274799
NZ_CP053853.1\|WP_013161896.1\|775403_776048_+\|dimethylsulfoxide-reductase-subunit-B	unknown	unknown	gnl\|CDD\|131996
NZ_CP053853.1\|WP_036943182.1\|795876_797232_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224152
NZ_CP053853.1\|WP_036940541.1\|784515_785961_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053853.1\|WP_013161902.1\|768867_769326_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053853.1\|WP_013161884.1\|792470_793985_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226957
NZ_CP053853.1\|WP_052809186.1\|770734_771226_+\|molecular-chaperone-TorD-family-protein	unknown	unknown	gnl\|CDD\|376858
NZ_CP053853.1\|WP_051733963.1\|779760_781278_+\|methyltransferase	unknown	unknown	gnl\|CDD\|368316
NZ_CP053853.1\|WP_013161890.1\|785957_786596_+\|dTMP-kinase	unknown	unknown	gnl\|CDD\|234814
NZ_CP053853.1\|WP_060762396.1\|777048_779511_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|274800
NZ_CP053853.1\|WP_052809185.1\|788383_790096_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237057
NZ_CP053853.1\|WP_036943178.1\|791628_792471_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NZ_CP053853.1\|WP_036940603.1\|786922_788236_+\|DNA-polymerase-III-subunit-delta'	unknown	unknown	gnl\|CDD\|236134
NZ_CP053853.1\|WP_013161887.1\|790225_791275_+\|PSP1-domain-containing-protein	unknown	unknown	gnl\|CDD\|224688
NZ_CP053853.1\|WP_036940523.1\|769981_770248_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP053853.1\|WP_036943178.1\|791628_792471_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	5.27019e-93
NZ_CP053853.1\|WP_013161890.1\|785957_786596_+\|dTMP-kinase	gnl\|CDD\|234814	PRK00698, tmk, thymidylate kinase; Validated.	1.3939e-79
NZ_CP053853.1\|WP_013161895.1\|776047_777052_+\|dimethyl-sulfoxide-reductase-anchor-subunit	gnl\|CDD\|225839	COG3302, DmsC, DMSO reductase anchor subunit [General function prediction only].	2.33614e-22
NZ_CP053853.1\|WP_048733646.1\|771441_772653_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|224068	COG1145, NapF, Ferredoxin [Energy production and conversion].	2.55436e-07
NZ_CP053853.1\|WP_051733962.1\|769487_769820_+\|flp-pilus-assembly-TadE/G-like-family-protein	gnl\|CDD\|274799	TIGR03816, tadE_like_DECH, helicase/secretion neighborhood TadE-like protein. Members of this small, highly hydrophobic protein family occur in a pilus/secretion-like region that usually is next to an uncharacterized DEAH-box helicase, in Actinobacteria. Members show sequence similarity to the TadE-like family described by pfam07811. The function is unknown. [Unknown function, General].	7.79187e-09
NZ_CP053853.1\|WP_013161896.1\|775403_776048_+\|dimethylsulfoxide-reductase-subunit-B	gnl\|CDD\|131996	TIGR02951, anaerobic_dimethyl_sulfoxide_reductase_subunit_B, DMSO reductase, iron-sulfur subunit. This family consists of the iron-sulfur subunit, or chain B, of an enzyme called the anaerobic dimethyl sulfoxide reductase. Chains A and B are catalytic, while chain C is a membrane anchor.	9.71222e-91
NZ_CP053853.1\|WP_097807466.1\|772786_775390_+\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|274006	TIGR02166, Putative_dimethyl_sulfoxide_reductase_chain_YnfE, anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family. Members of this family include known and probable dimethyl sulfoxide reductase (DMSO reductase) A chains. In E. coli, dmsA encodes the canonical anaerobic DMSO reductase A chain. The paralog ynfE, as part of ynfFGH expressed from a multicopy plasmid, could complement a dmsABC deletion, suggesting a similar function and some overlap in specificity, although YnfE could not substitute for DmsA in a mixed complex.	0
NZ_CP053853.1\|WP_013161884.1\|792470_793985_-\|ABC-transporter-permease	gnl\|CDD\|226957	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane].	3.73254e-13
NZ_CP053853.1\|WP_026138135.1\|797631_798957_-\|ISL3-like-element-ISPfr2-family-transposase	gnl\|CDD\|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	2.50507e-76
NZ_CP053853.1\|WP_052809186.1\|770734_771226_+\|molecular-chaperone-TorD-family-protein	gnl\|CDD\|376858	pfam02613, Nitrate_red_del, Nitrate reductase delta subunit. This family is the delta subunit of the nitrate reductase enzyme, The delta subunit is not part of the nitrate reductase enzyme but is most likely needed for assembly of the multi-subunit enzyme complex. In the absence of the delta subunit the core alpha beta enzyme complex is unstable. The delta subunit is essential for enzyme activity in vivo and in vitro. The nitrate reductase enzyme, EC:1.7.99.4 catalyze the conversion of nitrite to nitrate via the reduction of an acceptor. The nitrate reductase enzyme is composed of three subunits. Nitrate is the most widely used alternative electron acceptor after oxygen. This family also now contains the family TorD, a family of cytoplasmic chaperone proteins; like many prokaryotic molybdoenzymes, the TMAO reductase (TorA) of Escherichia coli requires the insertion of a bis(molybdopterin guanine dinucleotide) molybdenum (bis(MGD)Mo) cofactor in its catalytic site to be active and translocated to the periplasm. The TorD chaperone increases apoTorA activation up to four-fold, allowing maturation of most of the apoprotein. Therefore TorD is involved in the first step of TorA maturation to make it competent to receive the cofactor.	1.67937e-17
NZ_CP053853.1\|WP_051733963.1\|779760_781278_+\|methyltransferase	gnl\|CDD\|368316	pfam05175, MTS, Methyltransferase small domain. This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases.	1.2071e-23
NZ_CP053853.1\|WP_036943182.1\|795876_797232_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|224152	COG1231, COG1231, Monoamine oxidase [Amino acid transport and metabolism].	1.56609e-62
NZ_CP053853.1\|WP_060762396.1\|777048_779511_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|274800	TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.	0
NZ_CP053853.1\|WP_036940603.1\|786922_788236_+\|DNA-polymerase-III-subunit-delta'	gnl\|CDD\|236134	PRK07940, PRK07940, DNA polymerase III subunit delta'; Validated.	1.12764e-174
NZ_CP053853.1\|WP_052809185.1\|788383_790096_+\|hypothetical-protein	gnl\|CDD\|237057	PRK12323, PRK12323, DNA polymerase III subunit gamma/tau.	5.46894e-13
NZ_CP053853.1\|WP_013161887.1\|790225_791275_+\|PSP1-domain-containing-protein	gnl\|CDD\|224688	COG1774, COG1774, Uncharacterized homolog of PSP1 [Function unknown].	4.72935e-47
NZ_CP053853.1\|WP_013161883.1\|794249_795701_+\|amino-acid-permease	gnl\|CDD\|236830	PRK11049, PRK11049, D-alanine/D-serine/glycine permease; Provisional.	0

>NZ_CP053853.1|WP_051733963.1|779760_781278_+|methyltransferase
MTMRQHAVSDDFLRPDSINAFTDALRGAKYNVDAVLERLGEAGQEGLTRNQTMPALDRLGDATDAQADLIRLFPLQQIVPRSRLAAFLDVPALIEAGVLGAIGREGIHADIDVRPYGFTDAAGEWSGWVAADPIPGMDSMVTRTRPNYVLGVSPASTSLAQLTVPDRVGSALDLGAGCGVQSLHLARHADTVTLTDINPRALDMARLTLALNGLDLDVRAGSFYEPVAHDSFDLIVTNPPYVMSPPTDAADRLVYREGGFAGDGLVRHVVREGASHLADGGLLQVLANWADTREASWEDRLAEWVRGTGCDLWVVEREHLDVYSYIEMWLTDAGLSGDPIWLDRYAEWLNYFDAQGITGVGLGWIMVRKSGSAEPSVHMESWPYTIAQPVGAALSAGWTARDVAGLDDDELLARTFTVDPSVVQEATGRPGAADPSHVVLRQTAGLCRALAVDAAVGGVIGACDGELPLGVLIGAVAGLLDQPVDELEAAILPRLREAIEQGFIA
>NZ_CP053853.1|WP_060762396.1|777048_779511_-|DEAD/DEAH-box-helicase
MAIPQWLAGDPCVLHVDHRDALPGTTAEWPEWLSADCVATIRAAGVPLPWRHQREAAELAHAGRHVALSTPTASGKTLAYLLPLMAATAPGAAAEGFEWADAAQGDRRGPSTNRGLAAALVADHGLSADRLDPGLSGGGLAGAGLSGEAMVGSRARATTVSRARSALGLKQGATALYLAPTKALAHDQMRAARTFGPKGWQAGSLDGDSDAAERRFAREQADLVLTNPDMVHHALLPGHARWARLLSGLRYVVIDEAHRYRGVFGAQVGGVIRRLRRLCHAYGSDPVFILASATASHAGESGAALIGEPEPIAEVNDDASPHPARDVVLWRPESSAYDDAAKILAGLVDQGRQTIAFVASRAQCELMAVRAKEKSRSGRAIASYRSGYLAMDRRQIEAGLQSGRLFGVSATNALELGVDVAGMDAVVICGFPGTLASLWQQAGRAGRADRDALVVVVQREDPLDAYLFAHPELIFSAPIERTVLFPDNPHVLGPQLAAAAQEAPLTPADARWFGPTMAGLCEQLCAAGLLRRRATGWYWPRPERAVDAIDLRGTGGKPLDIIEEDSGRVIGQVDMAAADHSVYPGAVYLHQGEQFLVDAYHPERREALVNRRRPGYFTQPRTIIEARILHEDAHKPLGRTTVCTGDIDLTTQVTGYLRRDEVTTQVWDENPLELPVQRMGTKAVWWTVPEDVAAEVGLSAIKLANAAHAMEHTAIGLLPGFAPCDRWDIGGVSMMVHPDTELCTIIVHDGQAGGSGFARAGYECAEAWLAATLQRLQTCSCLAGCPACIVSPKCGNGNQHLDKDAATRLLAALLEGPAQR
>NZ_CP053853.1|WP_013161895.1|776047_777052_+|dimethyl-sulfoxide-reductase-anchor-subunit
MDVHHLPLVLFTVIGQMCVGTFLCLGVMQLVVSARHGRAVAQRIIEPVVYAIGPVMVLGLVASMFHMHDITHTLNVIRHWRTSWLSREIIFGIGFAGLGFAYALLEWFEVAGFRLRQVVAALTALFGIALVWSMAQIYYSVPTIPAWHNWAVPFQFFGTTAVLGPLAVGCALMATAALRARHAAHDVATPAANPAHGGPTARIRGRIRAINAPATAGEWAISTSVVRWLALVAAVAAAAVLISYTLYVSGLTGGNAQAQLAAGVFSGPLFAVRLTLLGLAAIVLGLFVFRVADRAPVDRSWGLAALMATCLAGAFVAEVIGRFFHYAAMYRVGI
>NZ_CP053853.1|WP_013161896.1|775403_776048_+|dimethylsulfoxide-reductase-subunit-B
MADDLTRPGADYGFFFDQTLCTGCKACQVACKDKHDLPVGVTWRRVVEYSGGSWQTNEADHTVTPNVFTYYTSISCNHCEDPLCVQVCPTTAMTQRDDGTVFVDQSKCVGCRYCEWACAYGAPQFNAEAGHMTKCDLCYDYRQSGQDPACVAACPSRALEWGPIDALRAAHGDEAGIAPLPDPAITHPRLVIKPHRDAQKWDQADGHIANPKEI
>NZ_CP053853.1|WP_097807466.1|772786_775390_+|molybdopterin-dependent-oxidoreductase
MAGAGSAAGTTTADPQHTQHHPSPTRRTFLKWSAAVGGTAALASTVTNLGMPHGSTAHAATEGIADADRTVWSACTVNCGSRCPLRLQVKDGTVVRVLPDNTGTDQIGSQRVRACVRGRSIRHRIYNPDRLKKPLKRKPGTKRGDEQWQEISWDQALDEIAAKMTQIKADYGNEAIYINYGTGTLGSTISKSCDADVSAFARLMNTWGGYLDHYSDYSTTEITAAYPYFYGSWVDGNSFDDVATSHLQVLFGNNPIETRMSGGGQLFVTQQMRKEHAVRTIVIDPRYSETAVDLADEWIPIRPGTDAALVAGMIHVMVAENLHDQGFLDTYCIGFDDAHMPDGAPANASYRAYLAGRGADGVEKTPEWAASITGVPADQIRRLAREIALAKPCAITQGWGPQRQANGENTARAIFLLAAVTGNIGVSGGGTGARESARSISFVTPFNKGTTNPSKKIIPVFAWLDAIDHGEQMDTFNAGVCEKPASMAREAKVPVDDNGNPTNIKLDVPIKMVWQYGGNSIVNQTGDNNKSVEILRDDSKCELIVNCDIQYTTSCRYSDYILPGTSAAEEADIHPGSNGGPMAYGIISQQAIEPLYECHDIYWICTQLARRLGTEQAFTQGRSREDWLRATIDATRAKVPDLPDYDDWKQRGIFRKDMGPVIALADFRADPVAHALETPSGKIEIYSQRLARMSEKWEYGVFRDKLPGDSLHPLPEFVDTWEGALAARASREYPFQVIGHHYKARTHSTYGNVDWMKEAHRQQAWINILDARNRGIADGDQVFLYNDRGTIRLEAKVTERIMPGVISVPQGAWYAPKSADEVKPPPGANPERPVDTAGSVNSLTSLHPSPLARGNAVHTTIANVVKA
>NZ_CP053853.1|WP_048733646.1|771441_772653_+|4Fe-4S-dicluster-domain-containing-protein
MPSHRTDTDVTPADATRSLLRWLAAHDLPDEVVLTCADAPVPAVAPDTLTVQVPDGVASAGIGLPAQLLAMGVAHIAIETCSCHEPSDEQAPSDEQILPDQQISRDETVQRWPAALKDVEVRHPASNPAADRPGPDHPRRRPRHLRRPSLRTPGRAPSAGTLRLGNVPVPRRMVLGVALAGRARLDLSRAEPERVHDALRQLSEQGRADLTRLHDIAPTPSPAPVLRAEGCVACGVCVMSCPHGALGLADGDDDGTTLLIHLAEKCRGEMSCLRLCPAGVLTTPAAHPAPQTPRDEASPPQTGSRMDGGSQRPVSRQERTPSRASATDDVPHIPMEQLAERPHRAIARVATARCARCGTRHPASQGTLCPTCHFRSTHAFGSAMPPALARAAGADNGAHRPRQ
>NZ_CP053853.1|WP_052809186.1|770734_771226_+|molecular-chaperone-TorD-family-protein
MEQIRESARAGETPEEIRRDHDLLYGDTAAARVAPYESVHRGVDGLVFGEATLEVRAAYQALSLQAPKLNQEPDDHIGLEFDFMAQLTLQVIDALYGDDAARAEKLMTHGTDFLRDHLLAWAPQMLDLATQHAQTHFMKGVVLLSIGALDSYAELLDLPFERP
>NZ_CP053853.1|WP_036940523.1|769981_770248_-|hypothetical-protein
MAHHKDDPETMARMRTWLAAVAGELGLDDGLPAEAEKPVLDLISQVAHGPSRPGAPLTAFLVGVAVGRGDSLEDQTAAISRLVARFGA
>NZ_CP053853.1|WP_051733962.1|769487_769820_+|flp-pilus-assembly-TadE/G-like-family-protein
MLALIIVLVTCVVAYWTVVFAGWVGSIHRARSAADMASLAGAHALQVNGDACSEARRIATSNGAELTDCTPTRGIGEYVVEVTIAMPLTPSLPGAPSKVRETSTAGEVQR
>NZ_CP053853.1|WP_013161902.1|768867_769326_+|hypothetical-protein
MGTRAGRRAVMHAAQAPASEYPHRNPRPGDAVRRTRFGRTRDRGMVTAELAVGILSVALLAGIFCWVVAVIGVQIRCGDSAAQIARQTARGDQAAVQRARAGVPRDAEIDIRSSGSDVVVTVKAELSWGKVGPVTVSGSSRVTREAGVEAGS
>NZ_CP053853.1|WP_036940541.1|784515_785961_+|hypothetical-protein
MSKKRATWHFQLPWHVESPLLTDIGLALDRVVPRDPEHLPPATVTLMDTADERLQRAGVKVAQQSYGDHGEWFVWGPDWTPWLPAERDDPVGVEAELPDEVADLTRPFRRRNALRPVVVATRMRVRYAVIDDHGTVVATLTSDRIVVRRRGVAAGRFRQVAIDVAGLDPQRRAFIIERFEAIGAQRVDALPHLFEQAVAASRDDALPGERPAGGSLDAFVGWVLARRAREVITNDLALRSGEVGDATALVVALAGLRDELEALSGLLQPAWRDEQLRRLDALGPDPDGHVLAHDDYLDLLDALEAATRTPPLTVDGATAARAVLGERLGGDRLRLIGHVDALIRGDLVGGDLMGRDQARGGGSQSITRKEWMRALTVGEQALQLTEVAGVLFGRRKHMVRLLGKVVAALSAARPPEGPLSDDEIAELSPAQAYAAGRAVERGLQVTGAERRYLVDHWPTWRAKLLALTFSSNKPSASGDHR
>NZ_CP053853.1|WP_013161890.1|785957_786596_+|dTMP-kinase
MSTRRYPGWFVVFEGGDGVGKSTQVELLADALADAGVSHLVTREPGGTPLGDNIRELLLDPASGDVAPRAEALLYAADKAQHLHEVVVPALAAGKVVVCDRYLDSMLAYQGAGRVLELREVADIADWATRGLRPDLTVLLDLDPDEAVGMKEHKDRLEQAGVEFHRRVRQGFLDLANADPERYLVLPGRQGREWAAGRVRERLRGLGVQLIG
>NZ_CP053853.1|WP_036940603.1|786922_788236_+|DNA-polymerase-III-subunit-delta'
MLPFDPAHPLVGVWSDLVGQQQAVRVLRRAVIGAEAAEAARVRSASGDAAAVDGAAPGHAMTHAWLVTGPPGSGRSNAARAFAAALQCRFGGCGECNDCRTALSGAHPDVTLVRTEMLSIGVDEVRDLVRKASMSPTMGRHQVIVVEDADRITDRGADALLKSLEEPPARTVWVLCAPTPDDVIVTIRSRTRQVALRTPPNSDVVRLLVERDHIDRAMAEYAAKAAQGHIGRARALARDEKVRNARHAVLLVPSRLTSVGACLTVADDLVKAADAEADRITGRLDEADRARLSEALGFGTKGARPRHAAAALRDLEDQQKARAKRVRRDALDRSLTELTTWYRDVLAVQTGAVDPSGLHSASGVVEGALDEPPTHTVGLINAEMRADVARAAVATTPEQTLHSIDAILECRQALETNVNPLLAMEALLLQLGTATQS
>NZ_CP053853.1|WP_052809185.1|788383_790096_+|hypothetical-protein
MTTRDKKDNLYDSVSEPTDAAQPAPEPAAGQGGAAPVPDATGTSTPAGQPATDAQPVAPAAPSAADATAPLTQPGAQPGPRPASTDAAGQPDAAAQAAQAAQAAPAATDHQAPGFHPGFGAVPAPSPTQAAEATGIGQTKAVPFVSNQAPAAQSPAGQTPAGQNPASQNPAGPAQPTPAQPATPVPGAGTPAPAAPQAPGSGATGTQPVSADGAAQPPARQFPTSMAGTVPAPPAPVGGRGVPDFSAPDAGPRPGFMTAAELAARDGAPGSAAATGQGAASGEAAVPAGSATSSFLRTTSDSSTERSQQVTNEASSAAASVSSMPNMPVVAASTVFGADLSHNSSARDMADTATQKPVIDTAAADRERKAREEAARVKQEEAARVKQEEAAQRARERAARERRLGTVAQQPQEPLVIEKPQGPSTDKFAPALGLFLMRLVTAVIIGVYGYQMLTERQPVVDALVSIGIPRAGMVTWGLSVLLLVMAVMFVFGFGARVAGALTTVLAGLTIAFYRWGDFNPFVAGTAGFSGDIELLLAGIGLVFLLVGAGGWSLDGGIRRSRVRRKQEAEF
>NZ_CP053853.1|WP_013161887.1|790225_791275_+|PSP1-domain-containing-protein
MASVLAVEFQPHGQLHYLAAGGHEHAIGDQVLYPTEDGREVARVVWRGDVDLPDAVPVCAGAATPADLARDEANRQVRADAAEVARLLIERHGLAMKLLAVDFLDQSSDYDRLTVFYYQSPERVDFRALLGDLVRALRSRIDLRQVGARDAARLTGGVGPCGRPLCCSSMLTLDPVSLRLAREQGMLVSAVQRCGVCGHAMCCLRYEQQAYEDFHARAPKVGTTVMTPAGEGTVIGHQVPNDALLVRTRDGEQSSCPLAQASACQCAAATPRKKKKPRTKRRRADAAVPNVPGAAGAAPLVDGTGAGKTSGTGGPTGSADASGTGGPAGSDDGAGPSRPTAASDAGTAQ
>NZ_CP053853.1|WP_036943178.1|791628_792471_-|ABC-transporter-ATP-binding-protein
MYTLTDVTKTYAGKHPVTALDRVTITIPDGQMVAIEGPTGGGKSTMLQMLGALDVPTSGTVTLDDVELSDAGERRLQEVRAERVGIVFQNFNLIATLSALENVQTALVPLGVGAEERLERSRAALDQVAMGDRADHLPSELSGGQQQRVAIARALVKRPRVLLADEPTGNLDGPMRDEILALLHSSWHAMGLTVIMVTHDSRVAASAQRRLRIAHGRLSEIGDGRRAGADEPDGARGDAGGARRSPAPAQDHPDDALEDATPGASHQPTAPGTYEERPLG
>NZ_CP053853.1|WP_013161884.1|792470_793985_-|ABC-transporter-permease
MLMTFARRELGRRRRQTIIVALGLAIAVALLMVVHSVSSGVSRAQSEVLSSVYGVGTDITVTQKSTQQPGQGFDMAPGAQDANGNTSVSSTTVRTTRGTEAFDASQLATVQGVQGVAGATAVLNLEQTTFDGQIGSSGSASSSSSGSSSSASASPSASASSGTSRGAMGGGRMNLNQTTITGVEPGATLGPLSTLSVSSGRALATSDDGNDVALVSSDYASQHNVAVGGTISVANKDVSVVGIVTSSSSSSISEVYLPLKTAQALSDNTDKISEILVQASDSNQVSTVASALTKALPSATVSTQEALAQSVSGSLGSASKLISSLGTWLSIGVVVVAFGLAVLFTVSGVNQRTRDFGTLKALGWSRRRIVGQVATESLLRAGIGGAAGIVLGLVATLVINAMGITLSGSTGGFSMGGGRGAPGGQPSGMPSMAGGQAGGAPAGGGGGMAERASNAVNVVLHSPVSIQMIAIGLAAALVGGLLAGVIGGWRAGGMRPAEALRSVE
>NZ_CP053853.1|WP_013161883.1|794249_795701_+|amino-acid-permease
MSETNAVVSDRHHGDQDNDDQHLHRALGNRHVQLIAIGGAIGTGLFMGSGKTIHTAGPSIMLVYLIIGVMLYFVMRAMGELLLSNLNYKSFQDFAADLLGPWAGFFAGWTYWLCWVVTGMADVIAFTSYWDFWLKNETWSIILSVATLALLFVLNLLTVRLFGELEFWFALIKIVAILGLIVLAVVLVVIGFTAPDGVKASLANLWNDGGVFPKGMNGFLAGFQIAVFAYVGIELVGTTAAETKNPLKTLPKAINAVPVRVLMFYVVALAAIMCVTPWSQVNPAVSPFVNLFGLVGFGAAATVMNFVVLTSAASSANSGIYSTSRMLYGLSHKGMAPNAFGRLTRHGVPASGLFVTVVLVSSSLLLTMSNSVIEAFTLVTTVSSVLFIFVWGLILVSYLRYRAKRPDLHASTTYAMPGGRVMCWVVLAFFAFVIWVLTQQPDTLKALVVTPIWFVILAIGWFAVRGRAHLDDTITQELRAEKG
>NZ_CP053853.1|WP_036943182.1|795876_797232_+|FAD-dependent-oxidoreductase
MLDCLIVGAGFGGLTVATQLVRRGHDVMVLEARDRIGGRVDNARFSSGELVEQGGQWVFPNHDRMLELIDEAAAATMPANPGKLLVVQQGDVWAVEQSPDEHSHRTPFAAADLGQGVLRLRRLAERTVSDPAWAGANTAWLDQPMERWLTANLRTPSAQRDLRGALRAVVHGPLSDTTLGDVLTHVRAGVDMENLIATNGDIGQVRLVDGVLQLAERMAAQLEGRVRLSTPVVTIDQEDDAVVVVTSEGEQIRARTAVLSVPPWLAKDLVWAPQLDPWRYETVQKTPAGAIIKCHMLFEPPWWRDAGLSGQMAADDGPVRVTFDTSDPASERGILMGFFEGAEAATLTKFSASMRERVFRDALVTVFGEQAATPLEYLDHDWGADPFTKGSHGAHFAPGLWSVTGQQLGARFGRVHFAGAEYASKFNGYMEGAVRSGTDTAAQVVMQLHGQ
>NZ_CP053853.1|WP_026138135.1|797631_798957_-|ISL3-like-element-ISPfr2-family-transposase
MSDATPPAGFGRPDLTAFARLDGLGLSVTGQRLEPDRAVLACRVVEPDQWCRRCGSEGAARDTVIRRLAHEPLGWRPTVLEVVVRRYRCADCGHVWRQDTSAAAEPRAKLSRTGLRWALEGIVVAHLTVARVAEGLGVAWDTANNAVLAEGKRLLINDPTRFEGVKVIGVDEHVWRHTRRGDKYVTVIIDLTPVRDGAGPARLLDMVEGRSKAAFKTWLADRDDAFRDAVEVVAMDGFTGFKTAAAEEIPDAVTVMDPFHVVRLAGDALDRCRRRVQLAIHGHRGFRDDPLYKSRRTLHTGADLLTDKQSDRLRALFVDDAHVEVEATWGVYQRMIAAYRHEDRQRGRELMEKLITDLSAGVPKVLTELTTLGRTLKKRAADVLAYFERPGTSNGPTEALNGRLEHLRGSALGFRNLTNYIARSLLETGGFRPQLLHPRLG

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Crispr_ID: NZ_CP053853_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053853_3

2546926-2547465

Orphan

Consensus_repeat	Method
ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC	PILER-CR
ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC	CRISPRCasFinder
ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC	CRT

7 spacers

The CRISPR arrays of NZ_CP053853_3

>merge|NZ_CP053853|3|2546926-2547465|PILER-CR,CRISPRCasFinder,CRT
ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCAGCGCATGGGAGAAGGCCCGGCAGGACGCCGTGGACATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCGGCACCGGGCTCGACGTGGACCAGATGATCGCAAATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCCGTCACCCTCAATCGTGGACAGAGTCGTCTTGCCCAATTGCCCCTCCTTCTGGAGGGACCCTTCATTGAGGCGCATTTGCTTGCCCATTTGCTTCCTCCAATCTGCGTATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGCCGCACCAAGGCCCCGGCTCGGCGAGGGACGGTTGCCGTATTGCCTCTCCTTCTGGAGGGGCCCTTCATTGAGGCGTCATGGTGTGCGCACAGAAACCTAGAGTTCGGGCGGATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGAGCGAAAGAGCGATCATTCCGGGTATGGATCAAACCATTGCCCCTCCTTCTGGAGAGGCCCTTCATTGAGGC

>NZ_CP053853|3|1|2546926-2547465|PILER-CR
ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC	AGCGCATGGGAGAAGGCCCGGCAGGACGCCGTGGAC
ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC	GGCACCGGGCTCGACGTGGACCAGATGATCGCAA
ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC	CGTCACCCTCAATCGTGGACAGAGTCGTCTTGCCCA
ATTGCCCCTCCTTCTGGAGGGACCCTTCATTGAGGC	GCATTTGCTTGCCCATTTGCTTCCTCCAATCTGCGT
ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC	CGCACCAAGGCCCCGGCTCGGCGAGGGACGGTTGCCGT
ATTGCCTCTCCTTCTGGAGGGGCCCTTCATTGAGGC	GTCATGGTGTGCGCACAGAAACCTAGAGTTCGGGCGG
ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGA	GCGAAAGAGCGATCATTCCGGGTATGGATCAAACC
ATTGCCCCTCCTTCTGGAGAGGCCCTTCATTGAGGC

>NZ_CP053853|3|3|2546926-2547465|CRISPRCasFinder
ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC	AGCGCATGGGAGAAGGCCCGGCAGGACGCCGTGGAC
ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC	GGCACCGGGCTCGACGTGGACCAGATGATCGCAA
ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC	CGTCACCCTCAATCGTGGACAGAGTCGTCTTGCCCA
ATTGCCCCTCCTTCTGGAGGGACCCTTCATTGAGGC	GCATTTGCTTGCCCATTTGCTTCCTCCAATCTGCGT
ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC	CGCACCAAGGCCCCGGCTCGGCGAGGGACGGTTGCCGT
ATTGCCTCTCCTTCTGGAGGGGCCCTTCATTGAGGC	GTCATGGTGTGCGCACAGAAACCTAGAGTTCGGGCGG
ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGA	GCGAAAGAGCGATCATTCCGGGTATGGATCAAACC
ATTGCCCCTCCTTCTGGAGAGGCCCTTCATTGAGGC

>NZ_CP053853|3|1|2546926-2547465|CRT
ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC	AGCGCATGGGAGAAGGCCCGGCAGGACGCCGTGGAC
ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC	GGCACCGGGCTCGACGTGGACCAGATGATCGCAA
ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC	CGTCACCCTCAATCGTGGACAGAGTCGTCTTGCCCA
ATTGCCCCTCCTTCTGGAGGGACCCTTCATTGAGGC	GCATTTGCTTGCCCATTTGCTTCCTCCAATCTGCGT
ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC	CGCACCAAGGCCCCGGCTCGGCGAGGGACGGTTGCCGT
ATTGCCTCTCCTTCTGGAGGGGCCCTTCATTGAGGC	GTCATGGTGTGCGCACAGAAACCTAGAGTTCGGGCGG
ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGA	GCGAAAGAGCGATCATTCCGGGTATGGATCAAACC
ATTGCCCCTCCTTCTGGAGAGGCCCTTCATTGAGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053853.1\|WP_060762363.1\|2555182_2556049_+\|DUF3427-domain-containing-protein	unknown	unknown	gnl\|CDD\|378760
NZ_CP053853.1\|WP_097776107.1\|2538680_2540792_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|271189
NZ_CP053853.1\|WP_097776131.1\|2545660_2546871_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP053853.1\|WP_060762362.1\|2552885_2555186_+\|DEAD/DEAH-box-helicase-family-protein	unknown	unknown	gnl\|CDD\|197297
NZ_CP053853.1\|WP_155405098.1\|2540806_2540965_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053853.1\|WP_048769660.1\|2552037_2552787_-\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|377857
NZ_CP053853.1\|WP_157763674.1\|2535228_2536314_-\|ArsR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225222
NZ_CP053853.1\|WP_013160292.1\|2548066_2548573_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053853.1\|WP_060762361.1\|2549293_2550520_-\|ATP-grasp-domain-containing-protein	unknown	unknown	gnl\|CDD\|235876
NZ_CP053853.1\|WP_060762223.1\|2533858_2535154_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053853.1\|WP_044658118.1\|2556943_2557258_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053853.1\|WP_013160291.1\|2548607_2549123_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053853.1\|WP_155269317.1\|2556567_2556711_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053853.1\|WP_143828470.1\|2551705_2551945_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053853.1\|WP_155405099.1\|2544344_2545529_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053853.1\|WP_044658486.1\|2537080_2538355_-\|threonine-ammonia-lyase-IlvA	unknown	unknown	gnl\|CDD\|236318
NZ_CP053853.1\|WP_013160276.1\|2557487_2557661_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053853.1\|WP_081084266.1\|2541037_2542792_-\|TIGR04141-family-sporadically-distributed-protein	unknown	unknown	gnl\|CDD\|275009
NZ_CP053853.1\|WP_044635954.1\|2536319_2536607_-\|DUF2249-domain-containing-protein	unknown	unknown	gnl\|CDD\|370777
NZ_CP053853.1\|WP_081084265.1\|2543084_2544308_+\|DNA-cytosine-methyltransferase	unknown	unknown	gnl\|CDD\|223348

Protein	Function_ID	Function_description	E-value
NZ_CP053853.1\|WP_060762363.1\|2555182_2556049_+\|DUF3427-domain-containing-protein	gnl\|CDD\|378760	pfam11907, DUF3427, Domain of unknown function (DUF3427). This presumed domain is functionally uncharacterized. This domain is found in bacteria and archaea. This domain is typically between 243 to 275 amino acids in length. This domain is found associated with pfam04851, pfam00271.	1.08188e-24
NZ_CP053853.1\|WP_044658486.1\|2537080_2538355_-\|threonine-ammonia-lyase-IlvA	gnl\|CDD\|236318	PRK08639, PRK08639, threonine dehydratase; Validated.	0
NZ_CP053853.1\|WP_097776131.1\|2545660_2546871_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	2.78697e-49
NZ_CP053853.1\|WP_060762362.1\|2552885_2555186_+\|DEAD/DEAH-box-helicase-family-protein	gnl\|CDD\|197297	cd09203, PLDc_N_DEXD_b1, N-terminal putative catalytic domain of uncharacterized prokaryotic and archeal HKD family nucleases fused to a DEAD/DEAH box helicase domain. N-terminal putative catalytic domain of uncharacterized prokaryotic and archeal HKD family nucleases fused to a DEAD/DEAH box helicase domain. All members of this subfamily are uncharacterized. Other characterized members of the superfamily that have a related domain architecture ( containing a DEAD/DEAH box helicase domain), include the DNA/RNA helicase superfamily II (SF2) and Res-subunit of type III restriction endonucleases. In addition to the helicase-like region, members of this subfamily also contain one copy of the conserved HKD motif (H-x-K-x(4)-D, where x represents any amino acid residue) in the N-terminal putative catalytic domain. The HKD motif characterizes the phospholipase D (PLD, EC 3.1.4.4) superfamily.	2.08797e-77
NZ_CP053853.1\|WP_048769660.1\|2552037_2552787_-\|HNH-endonuclease	gnl\|CDD\|377857	pfam07510, DUF1524, Protein of unknown function (DUF1524). This family of uncharacterized proteins contain a conserved HXXP motif. A similar motif is seen in protein families in the His-Me finger endonuclease superfamily which suggests this family of proteins may also act as endonucleases.	5.72153e-31
NZ_CP053853.1\|WP_157763674.1\|2535228_2536314_-\|ArsR-family-transcriptional-regulator	gnl\|CDD\|225222	COG2345, COG2345, Predicted transcriptional regulator [Transcription].	1.51266e-05
NZ_CP053853.1\|WP_097776107.1\|2538680_2540792_+\|hypothetical-protein	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.89758e-05
NZ_CP053853.1\|WP_060762361.1\|2549293_2550520_-\|ATP-grasp-domain-containing-protein	gnl\|CDD\|235876	PRK06849, PRK06849, hypothetical protein; Provisional.	1.76129e-19
NZ_CP053853.1\|WP_081084266.1\|2541037_2542792_-\|TIGR04141-family-sporadically-distributed-protein	gnl\|CDD\|275009	TIGR04141, conserved_hypothetical_protein, sporadically distributed protein, TIGR04141 family. This model describes a sporadically distributed conserved hypothetical protein in which complete members average over 500 amino acids in length, although matching sequences frequently are truncated or broken into tandem ORFs. Regular co-clustering with known markers of mobility (integrases, transposases, phage proteins, restriction enzymes, etc.) suggests this family also is part of the mobilome. The function is unknown.	4.91229e-95
NZ_CP053853.1\|WP_044635954.1\|2536319_2536607_-\|DUF2249-domain-containing-protein	gnl\|CDD\|370777	pfam10006, DUF2249, Uncharacterized conserved protein (DUF2249). Members of this family of hypothetical bacterial proteins have no known function.	3.43957e-22
NZ_CP053853.1\|WP_081084265.1\|2543084_2544308_+\|DNA-cytosine-methyltransferase	gnl\|CDD\|223348	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair].	1.90591e-62

>NZ_CP053853.1|WP_097776131.1|2545660_2546871_+|IS3-family-transposase
MSTGNEKTRRQRRKFTAQYRHEAARMVIDSGRTIAEVSQELGLGPQLLGRWVKAEKETMTPSTLSPDEREELKRLRKENADLRMDNEFFGKSSGLLRCEASVSEKYTLMQAEKARYPIARMARLLKVSTSGYYAWVAAQQRDGDHLLPSLRARRRLDEAVRRIWVDSRSTYGYLRVCAQLRREGVVVDRKTVAASMRRQGLAGISPRRFRPVTTIPGTRTHSIPDRVKRHWDTGQVDRVWVTGITYLRTRAGWVYLCAIKDACSRKVIATAMSTTMTTDLVEEALRRARIIRPNAPRKVIIHSDRGTQFTSEQMYECCRELHLDQSMGRTGVCWDNAMIESQWSVLKAEFYDRYEWDTPQQAIQGVEEWIYDFYNTKRLNSAIGYQTPVEFEAQHAAALTRAA
>NZ_CP053853.1|WP_155405099.1|2544344_2545529_-|hypothetical-protein
MSNELPDDPSGASVEQLVGDSLRRAWAQYESKAPFTTALPSEVSDAVEAVLANGSAPNRQFLLAIAAGTLDDPESNPASLQQQSGDDGVDRRGMAYKVRDALTDFRDAHGLTLKISQDAGVSNQWREREITQEWVDQRRKQDKTWAEAFLVIAVWLTDSEDRVLAATALLDYVSVRIVQIAVESALDYPRFRATPRIAMDLVRSFLDVAPDRPDAMEAVVTVGARTLSSVLASKPTAQRRDINSPDPIDVVITSETDDTVKSGIEVTDVPIKLSKIQHEVVPAMLKLGLDRATVVSRGTPTESESEIDKYLVRAFTHFGHRIDLTTIDVIETWLSFPGTPRDLATDFLWGIGEELDQYSKAENRRAWFNVLTDYAEAIEQNNDEEDNEVEGQTD
>NZ_CP053853.1|WP_081084265.1|2543084_2544308_+|DNA-cytosine-methyltransferase
MSQTLRDTAASSADVAVSASQARQSEAQKPQSKHQLSDYSDVPKYDKPVGTYVSLYAGAGGLDIGFALAGFAPVWVSELDKAALDTHDKAFERLAKTRPHLRGHSYESRSGDLLAIPDDELPEEGSADLVIGGPPCQGFSVAGKMDPNDERSKHVFHYMDMVERIKPKAFVLENVKALYENKRWEGIRQMLLKRADELGYNATLKLVNASHFGVPQARERMLLLGVRKNIGNPVVPEPTTETDVPTVREALSQLPHYGEPGNDSLCKARITTAKAPVLRRSPFAGMLFNGAGRPLNLDGPSVTLAASIGGNKTPIVDQRALEFEDTESWVVEYHAKLWEEGDDAVVYDVPDYLRRLTVEEAAAIQTFPLGMEWCGPQSAKYRQIGNAVPPRLALAVGEAVKKVLRLN
>NZ_CP053853.1|WP_081084266.1|2541037_2542792_-|TIGR04141-family-sporadically-distributed-protein
MARKQSNEARMTLYRLVGLSSNDAAIREKYRDSNDDSYHYSHKTVSVGDTEAVLYWGTVERDRASWTTTVNGLTKEDLKVGNITASAVLVIPQADADEEMSDAESDDNSDSEGDGNEEPLFSAWAITFGMGFQMLEQHYIDPGFGRRVAIRCATPDGLNALSKTTLDERPQMVRSTIPSGGTLRRFGFEELGDLVTRLVAEGHVEGIGDPKKPMKVRGADSLNIPLSKSPKPLLENLDQITTVLDKEPASPELAALEHLSLVKDPVAKERLDYSPIKAIGDKSDQVALSYPYEIIDDFGQVGSFKIIGTRQRDPYDYLPAIDDLLDPIREEDDEEQRLKRLDRLSVILYKSSDDTDVGSPKIPIKKWLTFQTTIDGKRYFLQNNRWYVMDSEYVETVQRQVENIFDRGTYFDNLPDWPIYEIPNDKDTEKKANAELEYNKAIAKKLNGLCLDQQLIRPKGSAAGIEACDVLLPNGVFVHVKHVSSSAPASHLLAQSLVATDLLRTDEDAQRLLREKIKSIGGNLDDYETKPRRVVIVMAKNDEPITAKSLFTFTKINLVRHEQQLASMDVKLNIAPVVRKKQPK
>NZ_CP053853.1|WP_155405098.1|2540806_2540965_+|hypothetical-protein
MANNDDYKDAPERIKKIHEEGKNAPRKIIKDWAPRTIRLGQNKPEGNESRDV
>NZ_CP053853.1|WP_097776107.1|2538680_2540792_+|hypothetical-protein
MPRRNQLGLACSIQKVRLKDGAPARRAYVELPPLVLPDGSKKRRRAHAQGESIAAAVARLILQLRQKDFQMEADALLDSALSVLGAGFQDLLTDAQPHTTPLLGEALAAHIEARHRDGKIGDETHQRYAGLLKNHIAPHPIAKKHLDEVSRQDVEGFLDDLAAKRNEHGKPQLGTSPRRTIHDLLSQIFVKATRDEVIAKNPMLTVERAKKKHKAPGAQFAQKPGASRMLSRIFQTMPYEDYLRQLLLCLGMRTSERLGLQYQRLVWSKADDADALHGRLSFPALHIHVSHQLDRSVERHLIPLKTEESPRVLPMPLLALPHVDALLLRRAIEIVRLAQTRRNKQDKRLLAALRKHPQRLKDEGFTYDSNGAVLSPVFDETTFLFTNASGIPHRQQRANVLWRKTLDDLGVQEHIREQDLRHVAVSFLGEQRYSFPAIASITGHALRDTRSLSATYLHITEQTRAEEMELLAALYARPAEPVASDDIPAPLLSYAEQVPIYTLWRPPFLTDEALKQGASETDRQTRGSLQRYLPASLRTVSLADDSVTGAHEALTALSAQVIALADMRGYYVSGAPSTPPPATVEQAQEEVESATVSPVASGREPTRNERERALLDRIHYVSEDETAEINANRPAISDEQAQEMAARLRADLRAAKRAREHGSEADNGHNDEPAEVEETPDEATARLASRLLKDLEQDLEKEE
>NZ_CP053853.1|WP_044658486.1|2537080_2538355_-|threonine-ammonia-lyase-IlvA
MTTTEVSTLAHLVDQAAEGLAGVARVTPLQYNERISSTSGCRVWLKREDLQPVRSYKLRGAYTFISKLSDDEKRAGVICASAGNHGQGVAWACARLGITGTVHVPSTTPRQKRDRIRFFGGDHVRLVVGGDTYDDAARAAQDEADRTGATMVPAFDDPLIASGQGTVARELVEQLGHAPDVLVVPVGGGGLLSGCGAWMRENHPETRIIAVEPAGAAGLAAAMDAGRPVRLDHIDSFVDGAAVARVGDFTFKIARQLAPDLIAIPEGQVCTEMLSMYQVDGIIAEPAGALAASALSVHPMDTTLGIDPSQEIAIIVSGGNNDVSRYAEVVERSGVHEGRRRYFLVNFPQEPGALRRFLNEVLGPDDDIIVFDYTKHSNRDTGPALVGIELGDPTSFAELWTRMEESPLNVEVLEPDTAIYRMLV
>NZ_CP053853.1|WP_044635954.1|2536319_2536607_-|DUF2249-domain-containing-protein
MTDLPITQTHHCTCAEGETNTPELDASAIPHAIRHAAILGALQGLGHNESMILVAPHNPLPLLDQIDSMWPDVFSLEYVQEGPDAWKIRFTRVAA
>NZ_CP053853.1|WP_157763674.1|2535228_2536314_-|ArsR-family-transcriptional-regulator
MDGQTGPVRRAAVLGVGATDGAYPSDRGAPLDPQCQRLMDALLTAPGPMTVAQLGVDAEMRPNTVRFHLAHLGDAGLVSGVSARTTTRGRPGVLYRATARAFDSGPQHPRLLTEVLMHHFLADAATPPPSVEDPQRPTTVWERARRAGRAWSSHVDALPGNPAAGSFAPDRPACASTAQFDAFLAQLSDWGLAPSRTRDPGVPDDSAVPGESVAPHDPLAPNDPVAPQGPATSQDAAPSPSAAAPSHRPGGPTTGADPVSPDPASPHRDRLPDRVRIGLNRCPFAHEASECPDLVCGVHAGIIDGLLTQLGGAWRVARLTPHASAGQCLLDAELTHPAREVPTAARPTPAQRTDRGTTPPA
>NZ_CP053853.1|WP_060762223.1|2533858_2535154_-|hypothetical-protein
MSQPVAVPEQGSADPPLKPASQTRRVIVLLVPCGVAMVMGLDAALVLLGLPAPLSGERFSSAHGIIMTIGFLEALVSLESAVSLRRLWAYCAPAALAVGALLVLTPLPLQAGQLLMLVGCALLIVNYSVLWTRKHEPMVAVQVGGALAALGAVLLWTGGVSIPDLFAWLVTFLVLTIAAERVVISRFSPSVLTPAGARRYQRGIVVISALIVFACPLTTIWSGRVLPMFGLALIALTVVAAWGDGARSDLRVRARATVAGSDTKSLSDTASDADTASGSAITPSQRFTGVMVFISYMWLIVTGLLLVHPTLSGLHYDALLHAVFLGFVMTMVVAHVPTYLPFLLEIRFRFNPGFWGVAVLLNVGLVVRIVADLAGSETGRTLGGLANIAALLSLVAVAVWAAVVKGPEDPQAPAGDTRAISDTSPTKDSRA
>NZ_CP053853.1|WP_013160292.1|2548066_2548573_+|hypothetical-protein
MIENPGQTNNQPQSDDTERPEVRLVPVQLEINGSYALQLEDDKKFHPVAQDIVGLCELLVRRSEDLGAPLLPSIDQSDSANEVALANAAPFPIISDRYGTLEVPVDMAGFLKSMDESTPYTGELLGTDLMHIGQMMKELSIKTGIQWVPMPVGKAENGELGTMTPDQQ
>NZ_CP053853.1|WP_013160291.1|2548607_2549123_-|hypothetical-protein
MSDTPRPSHDPRPKVTLRTVLIAIGVVLVVLIAGAIVVTTRNASTPDTNPSPVAPAAVSTMSSGAVASRAAMMEEEKPDSEHVVEFRATTNRPGFVVYRVTDGEGTRADMTQSWSHEERVKNLDGVFLKVKSLSGGDADAEVSCQILVDGQVWGSDSGSGRGAFSKCLLRG
>NZ_CP053853.1|WP_060762361.1|2549293_2550520_-|ATP-grasp-domain-containing-protein
MHGKRVLLSEGSSLTARETLTVLGRRGVQVEIVSASSAPIARFSRWCRRLHHAPAPATDPIGYLAGVDALMATGRFTALIPTHEQAWLFSAGRRLLPHARVAVADIGAFGQLESKVRFARLLDHLALPQPAWAEVQQEPDLDRLGFPVWVKAAFSTAGRGVRHVHNHHEAVSAWHALRSPDNPVMVQQSAPGRYRQVQAIFDHGRLVAAAVSEQLATGVGGSAAARLSVGDPMAVDAIRRVGEHLDWHGGIDLDFFSSQGQPQFIECNPRTVEPGNAAAAGVNLPQLLVDLATGAPLPHQPVVARAGVRTRSTMAIGLGAAESPGTRRGIGGALLRAVARRGPLRGSVEVLTPVLHDPPSIIPPLVTLPRVLANPRAVEHLAGRSVGAYAVGASAVAIVSAAAVGQSA
>NZ_CP053853.1|WP_143828470.1|2551705_2551945_-|hypothetical-protein
MSTTPDTEPTTTGRAHEKITSTELVPIAPAVKHRLSATPPATRTSPSRGHLEALREQLAQGDLSIDDAARLTREYIDNI
>NZ_CP053853.1|WP_048769660.1|2552037_2552787_-|HNH-endonuclease
MAHHRSAGWLALAAFVAASVLVGCDPPATTGSPSTSASSSVATSTPTPSITQTSAAGEAVATGDAEAVRQLLNTLPVKGRAPKTGYERSEFGTAWKDVDHNGCDTRNDILARDLTDKVYKPGTHDCVVASGVLHDPYTGTTIHFTRGQNTSTAVQIDHIVALSDAWQKGAQQLSGDLRTQLANDPLNLLAVDGPTNQQKSDGDAATWLPPNKAFRCTYVTHQVQVKAKYSLWVTQAEKAAITNQLGTCS
>NZ_CP053853.1|WP_060762362.1|2552885_2555186_+|DEAD/DEAH-box-helicase-family-protein
MADDPNNDMAPGLYETPLTEELQARVERTGLEATSKPIPAERRDAALSGSVQRTLREHLSALPEAPRKAVYTTNEILRQIAGPSAQLVTDSRGDPLELQSLTDGRPRYATRPLTPLNESTLITNARRDESLAQALNLELATADRVDLLCAFVKWSGIQSIMDTLAMLHEQGVPVRLLTTTYMGATDATAIHRLADELGFQVKVNYNTGTTRLHAKSWMIYRNSGFHTAFIGSSNLSHAAMVDGLEWNFRVSAVNEPALFSKLGTAFDTYWDDPKFEPYLPDRDDERLATSLKQAVAQPGRHFDAAFLDIQPQPHQRIMLDDLAHERQQDFHRNLVVAATGTGKTVLAALDYLRLCGDKPGSLSLLFVAHRKEILEQARSTYAHMLNDANFGELLVGGEHPTEHRHVFASVQSLSRMNLDALDPTAFDVMVIDEFHHAEAATYRRILDHFQPRELLGLTATPERADGVNVASFFGDRIASELRLWDALDGDLLAPFHYFVQWDDTDLRGVKASGGEYQAGELSRLYTDNDGRSRLVLAAMRHRILDPTRMKALAFCVSVEHAHYMADVLSQAGVPSVALSGQSCREIREAAIRDLREGRLACLCTVDLFNEGIDIPSIDTVIMLRPTQSATIFLQQLGRGLRRAPGKSVLTVLDFVGHQREDFSFEPRLRALTGQGRKQLVDSVEKGFSELPAGCEIQFDKMSQKEVLKNVKRQLATTTLRLVDEFANYARRSASPTEYSLRRFLAESGLTLGSILAGPSSAASRWR
>NZ_CP053853.1|WP_060762363.1|2555182_2556049_+|DUF3427-domain-containing-protein
MTFIRHRAGLATTIDVSPTGAYLRGRVRNFAHVDDPARAQAYVALSSPQGPQWDDLGPMQRIAAEMLFYSVWPKGRDQDDQLIGSIRDGLDVLRAHGWFSDELREVMESSVDASRAVFERPGGNLAGTPLVVHGTYRREELLAAIGVGRADGDARMPGDVREGVVWVESTGIGALSVQLEKDSDSFTDTTMYADYAINDTLFHWQSQSATTPGSSSGRRLLGEHAQSFDLALFVRQRGNDDLGKGAPYTFLGLVDLVSYSGSKPISITWRLRRPMPQGLYLAARAAAT
>NZ_CP053853.1|WP_155269317.1|2556567_2556711_+|hypothetical-protein
MAFATFTMWLPNGYWWARALVTTSLVVSVIIDIIHVQRLRKERRESS
>NZ_CP053853.1|WP_044658118.1|2556943_2557258_+|hypothetical-protein
MDVALGIAGTLMILLALDRALRWMERRGWIYYRKRKRTAGVALGPLFEALHPSHQYVATEQQRQSTVRKDSEDGQDRSPREDQPTVGPDAQIARHTHRAEPPSA
>NZ_CP053853.1|WP_013160276.1|2557487_2557661_+|hypothetical-protein
MTRETTAQVAMHTMGAASTVYVWAARGPKWARITTTACTLTVVALDAYLLGRWLRTR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP053853_2	2.1\|784308\|21\|NZ_CP053853\|CRISPRCasFinder	784308-784328	21	NZ_CP035418	Leisingera sp. NJS204 plasmid unnamed1, complete sequence	24862-24882	1	0.952
NZ_CP053853_2	2.1\|784308\|21\|NZ_CP053853\|CRISPRCasFinder	784308-784328	21	NZ_CP041156	Leisingera aquaemixtae strain R2C4 plasmid unnamed1, complete sequence	73773-73793	1	0.952
NZ_CP053853_2	2.1\|784308\|21\|NZ_CP053853\|CRISPRCasFinder	784308-784328	21	NZ_CP038237	Leisingera sp. NJS201 plasmid unnamed3, complete sequence	106383-106403	1	0.952
NZ_CP053853_2	2.2\|784353\|24\|NZ_CP053853\|CRISPRCasFinder	784353-784376	24	NZ_CP039965	Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence	47914-47937	2	0.917
NZ_CP053853_2	2.2\|784353\|24\|NZ_CP053853\|CRISPRCasFinder	784353-784376	24	NZ_AP017656	Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence	121074-121097	2	0.917
NZ_CP053853_2	2.2\|784353\|24\|NZ_CP053853\|CRISPRCasFinder	784353-784376	24	NZ_CP018821	Sphingomonas koreensis strain ABOJV plasmid tig00000001, complete sequence	296836-296859	2	0.917
NZ_CP053853_2	2.2\|784353\|24\|NZ_CP053853\|CRISPRCasFinder	784353-784376	24	MH444512	Bifidobacterium phage Willi, complete genome	3528-3551	2	0.917
NZ_CP053853_2	2.2\|784353\|24\|NZ_CP053853\|CRISPRCasFinder	784353-784376	24	MK932884	Bifidobacterium phage PMBT6, complete genome	3528-3551	2	0.917
NZ_CP053853_2	2.2\|784353\|24\|NZ_CP053853\|CRISPRCasFinder	784353-784376	24	NZ_CP022366	Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence	499907-499930	3	0.875
NZ_CP053853_2	2.2\|784353\|24\|NZ_CP053853\|CRISPRCasFinder	784353-784376	24	NZ_AP014707	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_3p, complete sequence	49875-49898	3	0.875
NZ_CP053853_2	2.2\|784353\|24\|NZ_CP053853\|CRISPRCasFinder	784353-784376	24	MT110073	Stenotrophomonas phage vB_SmaS_DLP_3, complete genome	32428-32451	3	0.875
NZ_CP053853_2	2.2\|784353\|24\|NZ_CP053853\|CRISPRCasFinder	784353-784376	24	NZ_CP005085	Sphingobium sp. TKS plasmid pTK1, complete sequence	71885-71908	3	0.875
NZ_CP053853_2	2.2\|784353\|24\|NZ_CP053853\|CRISPRCasFinder	784353-784376	24	KC170282	Uncultured bacterium plasmid pMBUI6, complete sequence	3102-3125	3	0.875
NZ_CP053853_2	2.2\|784353\|24\|NZ_CP053853\|CRISPRCasFinder	784353-784376	24	GQ919031	Streptomyces phage ZL12, complete genome	49155-49178	3	0.875
NZ_CP053853_2	2.3\|784401\|24\|NZ_CP053853\|CRISPRCasFinder	784401-784424	24	NC_015727	Cupriavidus necator N-1 plasmid pBB1, complete sequence	1387809-1387832	3	0.875
NZ_CP053853_2	2.2\|784353\|24\|NZ_CP053853\|CRISPRCasFinder	784353-784376	24	NZ_CP054842	Acidovorax sp. 16-35-5 plasmid unnamed2, complete sequence	106401-106424	4	0.833
NZ_CP053853_2	2.2\|784353\|24\|NZ_CP053853\|CRISPRCasFinder	784353-784376	24	NZ_CP025613	Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence	415999-416022	4	0.833
NZ_CP053853_2	2.2\|784353\|24\|NZ_CP053853\|CRISPRCasFinder	784353-784376	24	MT939492	Xanthomonas phage Xoo-sp14, complete genome	230325-230348	4	0.833
NZ_CP053853_3	3.1\|2546962\|36\|NZ_CP053853\|PILER-CR,CRISPRCasFinder,CRT	2546962-2546997	36	NZ_CP015734	Arthrobacter sp. U41 plasmid unnamed2, complete sequence	99431-99466	8	0.778

1. spacer 2.1|784308|21|NZ_CP053853|CRISPRCasFinder matches to NZ_CP035418 (Leisingera sp. NJS204 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.952

cgcaccacccgcaaggcgacg	CRISPR spacer
cgcaccacccgcaaggtgacg	Protospacer
****************.****

2. spacer 2.1|784308|21|NZ_CP053853|CRISPRCasFinder matches to NZ_CP041156 (Leisingera aquaemixtae strain R2C4 plasmid unnamed1, complete sequence) position: , mismatch: 1, identity: 0.952

cgcaccacccgcaaggcgacg	CRISPR spacer
cgcaccacccgcaaggtgacg	Protospacer
****************.****

3. spacer 2.1|784308|21|NZ_CP053853|CRISPRCasFinder matches to NZ_CP038237 (Leisingera sp. NJS201 plasmid unnamed3, complete sequence) position: , mismatch: 1, identity: 0.952

cgcaccacccgcaaggcgacg	CRISPR spacer
cgcaccacccgcaaggtgacg	Protospacer
****************.****

4. spacer 2.2|784353|24|NZ_CP053853|CRISPRCasFinder matches to NZ_CP039965 (Pseudorhodobacter sp. S12M18 plasmid unnamed1, complete sequence) position: , mismatch: 2, identity: 0.917

aagccggcggccaagaagccggca	CRISPR spacer
aaaccggcggccaagaagcctgca	Protospacer
**.***************** ***

5. spacer 2.2|784353|24|NZ_CP053853|CRISPRCasFinder matches to NZ_AP017656 (Sphingobium cloacae strain JCM 10874 plasmid pSCLO_2, complete sequence) position: , mismatch: 2, identity: 0.917

aagccggcggccaagaagccggca	CRISPR spacer
aagccggccgccaagaagcccgca	Protospacer
******** *********** ***

6. spacer 2.2|784353|24|NZ_CP053853|CRISPRCasFinder matches to NZ_CP018821 (Sphingomonas koreensis strain ABOJV plasmid tig00000001, complete sequence) position: , mismatch: 2, identity: 0.917

aagccggcggccaagaagccggca	CRISPR spacer
aagccggccgccaagaagcccgca	Protospacer
******** *********** ***

7. spacer 2.2|784353|24|NZ_CP053853|CRISPRCasFinder matches to MH444512 (Bifidobacterium phage Willi, complete genome) position: , mismatch: 2, identity: 0.917

aagccggcggccaagaagccggca	CRISPR spacer
aagccggcggaaaagaagccggca	Protospacer
**********  ************

8. spacer 2.2|784353|24|NZ_CP053853|CRISPRCasFinder matches to MK932884 (Bifidobacterium phage PMBT6, complete genome) position: , mismatch: 2, identity: 0.917

aagccggcggccaagaagccggca	CRISPR spacer
aagccggcggaaaagaagccggca	Protospacer
**********  ************

9. spacer 2.2|784353|24|NZ_CP053853|CRISPRCasFinder matches to NZ_CP022366 (Azospirillum sp. TSH58 plasmid TSH58_p04, complete sequence) position: , mismatch: 3, identity: 0.875

aagccggcggccaagaagccggca	CRISPR spacer
aagccggcggcaaataagccggcg	Protospacer
*********** ** ********.

10. spacer 2.2|784353|24|NZ_CP053853|CRISPRCasFinder matches to NZ_AP014707 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_3p, complete sequence) position: , mismatch: 3, identity: 0.875

aagccggcggccaagaagccggca	CRISPR spacer
aagccggcgaccgagaagccggcg	Protospacer
*********.**.**********.

11. spacer 2.2|784353|24|NZ_CP053853|CRISPRCasFinder matches to MT110073 (Stenotrophomonas phage vB_SmaS_DLP_3, complete genome) position: , mismatch: 3, identity: 0.875

aagccggcggccaagaagccggca	CRISPR spacer
aaggcggcgaccaagaagccggcc	Protospacer
*** *****.*************

12. spacer 2.2|784353|24|NZ_CP053853|CRISPRCasFinder matches to NZ_CP005085 (Sphingobium sp. TKS plasmid pTK1, complete sequence) position: , mismatch: 3, identity: 0.875

aagccggcggccaagaagccggca	CRISPR spacer
aagccagcggtcaagaagccggcg	Protospacer
*****.****.************.

13. spacer 2.2|784353|24|NZ_CP053853|CRISPRCasFinder matches to KC170282 (Uncultured bacterium plasmid pMBUI6, complete sequence) position: , mismatch: 3, identity: 0.875

aagccggcggccaagaagccggca	CRISPR spacer
aagcccgcagccaagaagccggct	Protospacer
***** **.**************

14. spacer 2.2|784353|24|NZ_CP053853|CRISPRCasFinder matches to GQ919031 (Streptomyces phage ZL12, complete genome) position: , mismatch: 3, identity: 0.875

aagccggcggccaagaagccggca	CRISPR spacer
aagaccgcggccaagaagccggcc	Protospacer
*** * *****************

15. spacer 2.3|784401|24|NZ_CP053853|CRISPRCasFinder matches to NC_015727 (Cupriavidus necator N-1 plasmid pBB1, complete sequence) position: , mismatch: 3, identity: 0.875

acggcgtccacggccaagccggca	CRISPR spacer
tcggcgtcgacggcgaagccggca	Protospacer
 ******* ***** *********

16. spacer 2.2|784353|24|NZ_CP053853|CRISPRCasFinder matches to NZ_CP054842 (Acidovorax sp. 16-35-5 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.833

aagccggcggccaagaagccggca	CRISPR spacer
gattcggcggccaagaagccggcc	Protospacer
.* .*******************

17. spacer 2.2|784353|24|NZ_CP053853|CRISPRCasFinder matches to NZ_CP025613 (Niveispirillum cyanobacteriorum strain TH16 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.833

aagccggcggccaagaagccggca	CRISPR spacer
gagccgccggccaagaagccggtt	Protospacer
.***** ***************.

18. spacer 2.2|784353|24|NZ_CP053853|CRISPRCasFinder matches to MT939492 (Xanthomonas phage Xoo-sp14, complete genome) position: , mismatch: 4, identity: 0.833

aagccggcggccaagaagccggca	CRISPR spacer
aagccggctgccaagaagccgctg	Protospacer
******** ************ ..

19. spacer 3.1|2546962|36|NZ_CP053853|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015734 (Arthrobacter sp. U41 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.778

agcgcatgggagaaggcccggcaggacgccgtggac	CRISPR spacer
gccgccacggacaaggcccggcaggacgccctggag	Protospacer
. ***   *** ****************** ****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1034 : 86650

Propionibacterium_phage(55.17%)

protease,tRNA,integrase,transposase

attL 4968:4983|attR 89492:89507

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_172664050.1\|1034_1322_-	Hint domain-containing protein	A0A1D8ETM2	Propionibacterium_phage	2.3e-16	97.5
WP_060762176.1\|1803_2097_-	hypothetical protein	A0A1D8ETM6	Propionibacterium_phage	5.0e-51	100.0
WP_172664051.1\|2093_2621_-	hypothetical protein	A0A1D8ETM9	Propionibacterium_phage	1.3e-68	76.8
WP_060762174.1\|2859_3093_-	hypothetical protein	A0A1D8ETS1	Propionibacterium_phage	3.7e-41	100.0
WP_060762173.1\|3309_3870_-	hypothetical protein	A0A1D8ETK7	Propionibacterium_phage	5.2e-97	99.5
WP_060762172.1\|3866_4199_-	WhiB family transcriptional regulator	A0A1D8ETL1	Propionibacterium_phage	4.8e-58	100.0
WP_155642800.1\|4195_4360_-	hypothetical protein	A0A1D8ETL9	Propionibacterium_phage	5.8e-25	100.0
WP_060762171.1\|4356_5196_-	hypothetical protein	A0A1D8ETL0	Propionibacterium_phage	9.0e-154	100.0
4968:4983	attL	NA	NA	NA	NA
WP_157763675.1\|5197_5902_-	PD-(D/E)XK nuclease-like domain-containing protein	A0A1D8ETS2	Propionibacterium_phage	8.7e-134	100.0
WP_060762169.1\|6045_6687_-	hypothetical protein	A0A1D8ETL6	Propionibacterium_phage	7.5e-84	97.2
WP_155642799.1\|6757_6931_-	glycine zipper family protein	NA	NA	NA	NA
WP_060762167.1\|7653_7869_-	hypothetical protein	A0A1D8ETR2	Propionibacterium_phage	5.1e-37	100.0
WP_060762166.1\|7944_8748_-	phage antirepressor KilAC domain-containing protein	A0A1D8ETL7	Propionibacterium_phage	8.4e-149	100.0
WP_060762165.1\|8810_9050_-	helix-turn-helix domain-containing protein	A0A1D8ETJ6	Propionibacterium_phage	3.8e-33	100.0
WP_060762164.1\|9143_9398_+	helix-turn-helix transcriptional regulator	A0A1D8ETK3	Propionibacterium_phage	3.0e-36	100.0
WP_155642798.1\|9669_10122_+	hypothetical protein	A0A1D8ETL2	Propionibacterium_phage	2.2e-45	99.3
WP_172664052.1\|10194_11505_-\|integrase	site-specific integrase	A0A1D8ETK2	Propionibacterium_phage	8.6e-252	99.8
WP_013160214.1\|12195_12723_-	DNA starvation/stationary phase protection protein	NA	NA	NA	NA
WP_080713603.1\|12880_13906_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_013160211.1\|14123_14342_-	CsbD family protein	NA	NA	NA	NA
WP_036943069.1\|14511_15570_+	AMP-binding protein	NA	NA	NA	NA
WP_060762314.1\|15566_16721_+	thiolase family protein	NA	NA	NA	NA
WP_060762315.1\|17114_18563_+	hexose-6-phosphate:phosphate antiporter	NA	NA	NA	NA
WP_060762316.1\|18555_19407_+	inositol monophosphatase family protein	NA	NA	NA	NA
WP_060762322.1\|19630_21103_+	cytosine permease	NA	NA	NA	NA
WP_060762323.1\|21150_22104_+	hypothetical protein	NA	NA	NA	NA
WP_044635918.1\|22310_22754_+	(deoxy)nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA
WP_013160198.1\|22846_23050_+	hypothetical protein	NA	NA	NA	NA
WP_013160197.1\|23373_24792_-	MFS transporter	NA	NA	NA	NA
WP_129931324.1\|25081_25816_-	MgtC/SapB family protein	G3MA03	Bacillus_virus	5.3e-17	45.2
WP_060762317.1\|25816_27511_-	metallophosphoesterase	NA	NA	NA	NA
WP_051734029.1\|27503_28892_-	MFS transporter	NA	NA	NA	NA
WP_155489333.1\|29040_29202_+	hypothetical protein	NA	NA	NA	NA
WP_172664053.1\|29300_29552_-	hypothetical protein	NA	NA	NA	NA
WP_172664054.1\|29551_31684_-	glycoside hydrolase family 3 C-terminal domain-containing protein	NA	NA	NA	NA
WP_060762318.1\|32052_32745_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_044635914.1\|32819_33794_-	UDP-glucose 4-epimerase GalE	A0A2K9L5H6	Tupanvirus	8.0e-45	34.5
WP_044657904.1\|34142_35540_+	DASS family sodium-coupled anion symporter	NA	NA	NA	NA
WP_081084291.1\|35619_36405_+	ROK family protein	NA	NA	NA	NA
WP_036942886.1\|36575_37571_-	iron-siderophore ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_172664055.1\|37818_38877_+	iron chelate uptake ABC transporter family permease subunit	NA	NA	NA	NA
WP_036942889.1\|39939_40845_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.6e-10	24.0
WP_060762320.1\|41274_42738_-	sugar porter family MFS transporter	NA	NA	NA	NA
WP_060762321.1\|42841_43840_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_044635911.1\|43869_44787_-	TIM barrel protein	NA	NA	NA	NA
WP_063493617.1\|45024_46062_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_055344181.1\|46083_47718_-\|tRNA	arginine--tRNA ligase	A0A2K9L2F0	Tupanvirus	4.0e-81	34.9
WP_036942892.1\|47809_49228_+	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	4.6e-49	32.2
WP_044657924.1\|49315_49942_-	YdcF family protein	NA	NA	NA	NA
WP_036942919.1\|50248_52021_-	DEAD/DEAH box helicase	I4AZM6	Saccharomonospora_phage	5.3e-79	35.1
WP_013160178.1\|54126_54420_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA
WP_013160177.1\|54433_55738_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_036942895.1\|55740_56613_-	electron transfer flavoprotein subunit alpha/FixB family protein	NA	NA	NA	NA
WP_013160175.1\|56649_57405_-	electron transfer flavoprotein subunit alpha	NA	NA	NA	NA
WP_112317765.1\|57588_58224_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_013160172.1\|59805_60684_-	3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase	NA	NA	NA	NA
WP_063493888.1\|60680_62276_-	AMP-binding protein	A0A2K9KZV5	Tupanvirus	2.5e-11	21.2
WP_036942904.1\|63602_64739_-	crotonobetainyl-CoA dehydrogenase	NA	NA	NA	NA
WP_114179009.1\|65154_65352_+	hypothetical protein	NA	NA	NA	NA
WP_097775979.1\|65348_65882_+	hypothetical protein	NA	NA	NA	NA
WP_097776113.1\|66191_67499_+\|transposase	ISL3 family transposase	A0A2H4PDF8	Mycobacterium_phage	1.5e-187	72.4
WP_013162142.1\|67694_68435_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_013162141.1\|68457_69378_-	oxidoreductase	NA	NA	NA	NA
WP_013162140.1\|69401_70286_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_013162139.1\|70285_71146_+	EamA family transporter	NA	NA	NA	NA
WP_036940446.1\|71773_72457_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_036940449.1\|72613_72847_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA
WP_036940452.1\|72933_74901_+	heavy metal translocating P-type ATPase	E4ZFI9	Streptococcus_phage	3.3e-106	39.0
WP_013160168.1\|75571_75895_+	hypothetical protein	NA	NA	NA	NA
WP_060762127.1\|75960_76752_+\|transposase	IS481 family transposase	NA	NA	NA	NA
WP_080516180.1\|76713_77667_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_036942789.1\|78015_81084_+	DUF4981 domain-containing protein	L0N6M2	Herpes_simplex_virus	2.1e-139	32.8
WP_060762125.1\|81106_82495_+	MFS transporter	NA	NA	NA	NA
WP_013160161.1\|82540_83536_+	UDP-glucose 4-epimerase GalE	A0A2K9L1R4	Tupanvirus	1.6e-40	33.2
WP_036942782.1\|83777_85085_+\|transposase	ISL3-like element ISPfr4 family transposase	A0A2H4PDF8	Mycobacterium_phage	7.4e-195	77.2
WP_060762126.1\|85231_86650_+\|transposase	IS30-like element ISPfr9 family transposase	W5R8L2	Staphylococcus_phage	2.1e-33	36.7
89492:89507	attR	NA	NA	NA	NA

DBSCAN-SWA_2

197994 : 267050

Tupanvirus(13.33%)

holin,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013160063.1\|197994_199269_-\|tRNA	serine--tRNA ligase	A0A2K9L088	Tupanvirus	2.8e-66	35.8
WP_172664056.1\|199416_200508_+	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_036942954.1\|200899_201886_-	prephenate dehydratase	NA	NA	NA	NA
WP_013160060.1\|202427_203108_+	hypothetical protein	NA	NA	NA	NA
WP_157763678.1\|203400_204354_-	aminotransferase class IV	NA	NA	NA	NA
WP_172664057.1\|204346_206080_-	anthranilate synthase component I family protein	A0A0B5J984	Pandoravirus	2.8e-64	36.6
WP_044657876.1\|206316_207306_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA
WP_044657877.1\|207506_208694_+	ABC transporter permease	NA	NA	NA	NA
WP_172664107.1\|209071_210511_+	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	1.7e-14	27.6
WP_060762135.1\|210565_212134_+	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	3.8e-105	43.1
WP_081084250.1\|212130_213315_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_060762136.1\|213311_216350_+	type I restriction endonuclease subunit R	NA	NA	NA	NA
WP_081014329.1\|216897_217992_+	3'-5' exonuclease	NA	NA	NA	NA
WP_013160051.1\|218106_219060_-	macro domain-containing protein	A0A0K1L687	Scale_drop_disease_virus	7.9e-21	43.9
WP_013160035.1\|221065_221872_-	hypothetical protein	NA	NA	NA	NA
WP_013160036.1\|222049_223585_-	gluconokinase	NA	NA	NA	NA
WP_013160037.1\|223843_224707_-	Fpg/Nei family DNA glycosylase	NA	NA	NA	NA
WP_013160038.1\|224699_225425_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_172664058.1\|225805_228172_-	protein kinase	A0A1M7XTW9	Cedratvirus	9.8e-12	26.9
WP_013160040.1\|228485_229094_-	LysM peptidoglycan-binding domain-containing protein	A0A1J0GVU2	Streptomyces_phage	1.2e-27	44.1
WP_044635867.1\|229306_230611_-	citrate synthase	NA	NA	NA	NA
WP_013160042.1\|231113_231917_+	EcsC family protein	NA	NA	NA	NA
WP_013160043.1\|232027_232897_-	SdpI family protein	NA	NA	NA	NA
WP_157761831.1\|233075_234680_-	S8 family serine peptidase	NA	NA	NA	NA
WP_013160045.1\|234701_235850_-	alanine racemase	A0A0P0YM39	Yellowstone_lake_mimivirus	1.6e-31	29.8
WP_080713591.1\|236022_236982_-	phosphopantothenoylcysteine decarboxylase	Q9HH70	Methanothermobacter_phage	1.1e-25	39.4
WP_013160047.1\|237619_237964_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_049770768.1\|237966_238614_-	hypothetical protein	NA	NA	NA	NA
WP_060762128.1\|238737_240045_+\|transposase	ISL3-like element ISPfr1 family transposase	A0A2H4PDF8	Mycobacterium_phage	3.1e-169	68.1
WP_080516022.1\|240079_241267_+	SPASM domain-containing protein	NA	NA	NA	NA
WP_044636463.1\|241695_243252_+	xylulose kinase	NA	NA	NA	NA
WP_060762144.1\|243304_244357_+	glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_013160005.1\|244430_245207_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	6.7e-18	29.8
WP_013160006.1\|245639_246638_+	3-methyladenine DNA glycosylase	NA	NA	NA	NA
WP_112317820.1\|246709_247897_+	MFS transporter	NA	NA	NA	NA
WP_080969631.1\|247925_249353_-	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	1.4e-21	25.1
WP_013160009.1\|249349_250045_-	response regulator transcription factor	NA	NA	NA	NA
WP_013160010.1\|250051_250966_-	peptidase E	NA	NA	NA	NA
WP_013160011.1\|251021_251486_-	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA
WP_036940614.1\|251482_251863_-\|holin	phage holin family protein	NA	NA	NA	NA
WP_036940611.1\|252001_253006_+	ornithine carbamoyltransferase	NA	NA	NA	NA
WP_013160014.1\|253009_253609_+	mismatch-specific DNA-glycosylase	NA	NA	NA	NA
WP_013160015.1\|253892_254681_+	oxidoreductase	NA	NA	NA	NA
WP_044636457.1\|254647_256003_+\|transposase	ISL3 family transposase	A0A2H4PDF8	Mycobacterium_phage	6.9e-188	72.6
WP_036943364.1\|255926_256181_-	hypothetical protein	NA	NA	NA	NA
WP_013160018.1\|256227_257322_-	YihY/virulence factor BrkB family protein	NA	NA	NA	NA
WP_013160019.1\|257384_257948_-	DUF3618 domain-containing protein	NA	NA	NA	NA
WP_081084284.1\|258131_259241_+	hypothetical protein	NA	NA	NA	NA
WP_044636453.1\|259508_259931_-	hypothetical protein	NA	NA	NA	NA
WP_036940428.1\|260044_260809_-	slipin family protein	A0A2K9L035	Tupanvirus	5.0e-26	32.6
WP_036940431.1\|261817_264232_-	cbb3-type cytochrome c oxidase subunit I	NA	NA	NA	NA
WP_013160028.1\|264961_265159_-	hypothetical protein	NA	NA	NA	NA
WP_097776136.1\|265246_266456_+\|transposase	IS3-like element ISPfr11 family transposase	U5P429	Shigella_phage	7.2e-35	34.1
WP_157763679.1\|266380_266719_-\|transposase	transposase	NA	NA	NA	NA
WP_063493589.1\|266741_267050_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_3

526810 : 545300

Mycobacterium_phage(33.33%)

integrase,transposase

attL 540865:540882|attR 543879:543896

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013162114.1\|526810_528118_+\|transposase	ISL3-like element ISPfr6 family transposase	A0A2H4PDF8	Mycobacterium_phage	1.8e-188	73.0
WP_013162107.1\|529159_529741_-	recombinase family protein	A0A219YA40	Aeromonas_phage	7.7e-19	37.4
WP_013162108.1\|529737_530517_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_013162109.1\|530513_530846_-	hypothetical protein	NA	NA	NA	NA
WP_041704881.1\|531214_531688_+	Hsp20 family protein	NA	NA	NA	NA
WP_041704882.1\|531946_532405_+	Hsp20/alpha crystallin family protein	NA	NA	NA	NA
WP_080516165.1\|532561_534529_-	KUP/HAK/KT family potassium transporter	A7K9V6	Acanthocystis_turfacea_chlorella_virus	6.3e-73	31.2
WP_013162114.1\|534761_536069_-\|transposase	ISL3-like element ISPfr6 family transposase	A0A2H4PDF8	Mycobacterium_phage	1.8e-188	73.0
WP_155642810.1\|536271_536730_-	hypothetical protein	NA	NA	NA	NA
WP_013162098.1\|536754_537183_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_097776078.1\|537252_539391_-	glycogen debranching protein GlgX	NA	NA	NA	NA
WP_027587604.1\|539862_540126_-	hypothetical protein	NA	NA	NA	NA
WP_013162095.1\|540129_540432_-	DUF4193 domain-containing protein	NA	NA	NA	NA
540865:540882	attL	NA	NA	NA	NA
WP_060762298.1\|541015_541957_+\|integrase	tyrosine-type recombinase/integrase	A0A0K2CP59	Brevibacillus_phage	1.4e-17	24.2
WP_129931493.1\|541953_542301_+	hypothetical protein	NA	NA	NA	NA
WP_013162093.1\|542360_542885_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_172664066.1\|544236_544521_-	hypothetical protein	NA	NA	NA	NA
543879:543896	attR	NA	NA	NA	NA
WP_013162090.1\|544809_544986_+\|transposase	transposase	NA	NA	NA	NA
WP_027587608.1\|544991_545300_+\|transposase	transposase	A0A1B3AZF8	Gordonia_phage	3.5e-23	59.1

DBSCAN-SWA_4

2606253 : 2632753

Propionibacterium_phage(100.0%)

holin,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_060762093.1\|2606253_2606703_+	hypothetical protein	A0A173G9I1	Propionibacterium_phage	8.4e-66	89.9
WP_060762094.1\|2606772_2607213_+	hypothetical protein	A0A1D8EUE4	Propionibacterium_phage	8.8e-76	97.3
WP_172664106.1\|2607214_2608189_+	hypothetical protein	A0A1D8EU84	Propionibacterium_phage	2.2e-119	90.3
WP_155642793.1\|2608299_2608635_-\|holin	holin	A0A173G9G7	Propionibacterium_phage	1.6e-48	93.7
WP_060762095.1\|2608655_2609507_-	N-acetylmuramoyl-L-alanine amidase	A0A1D8ETE4	Propionibacterium_phage	1.1e-146	85.9
WP_060762096.1\|2609557_2609833_-	hypothetical protein	A0A1D8ETK8	Propionibacterium_phage	1.2e-49	100.0
WP_155642790.1\|2609829_2610258_-	hypothetical protein	A0A1D8EU35	Propionibacterium_phage	2.1e-74	95.8
WP_060762098.1\|2610272_2611964_-	hypothetical protein	A0A1D8EU26	Propionibacterium_phage	7.6e-293	95.9
WP_060762099.1\|2611963_2612575_-	hypothetical protein	A0A1D8EU77	Propionibacterium_phage	4.3e-105	95.1
WP_060762100.1\|2612617_2612848_-	hypothetical protein	A0A1D8ETJ3	Propionibacterium_phage	1.3e-33	98.7
WP_155642791.1\|2612844_2614020_-	hypothetical protein	A0A1D8EU72	Propionibacterium_phage	2.4e-213	97.2
WP_060762102.1\|2614019_2614835_-	hypothetical protein	A0A1D8EU13	Propionibacterium_phage	3.8e-149	95.9
WP_172664113.1\|2614836_2618445_-	transglycosylase SLT domain-containing protein	A0A1D8EU70	Propionibacterium_phage	1.1e-275	89.8
WP_060762201.1\|2618957_2619326_-	hypothetical protein	A0A1D8EU78	Propionibacterium_phage	1.7e-64	95.1
WP_060762200.1\|2619325_2619679_-	hypothetical protein	A0A1D8EU71	Propionibacterium_phage	1.8e-55	98.3
WP_060762199.1\|2619776_2620640_-	hypothetical protein	A0A1D8ETJ7	Propionibacterium_phage	4.2e-154	98.6
WP_060762198.1\|2620649_2621018_-	hypothetical protein	A0A1D8EU76	Propionibacterium_phage	2.4e-58	95.1
WP_060762197.1\|2621014_2621263_-	hypothetical protein	A0A1D8ETP5	Propionibacterium_phage	1.7e-39	98.8
WP_060762196.1\|2621255_2621573_-	hypothetical protein	A0A1D8EU74	Propionibacterium_phage	6.8e-54	97.1
WP_060762195.1\|2621593_2621974_-	hypothetical protein	A0A1D8ETI1	Propionibacterium_phage	5.7e-63	96.0
WP_060762194.1\|2621960_2622161_-	hypothetical protein	A0A1D8ETN7	Propionibacterium_phage	5.3e-28	97.0
WP_060762193.1\|2622186_2623167_-	DUF5309 family protein	A0A1D8ETU8	Propionibacterium_phage	7.0e-182	99.7
WP_060762192.1\|2623183_2623816_-	hypothetical protein	A0A1D8EU60	Propionibacterium_phage	8.1e-107	100.0
WP_060762191.1\|2624145_2624910_-	hypothetical protein	A0A1D8EU68	Propionibacterium_phage	5.3e-145	99.6
WP_060762190.1\|2624896_2626408_-\|portal	phage portal protein	A0A1D8EU66	Propionibacterium_phage	1.9e-282	99.4
WP_060762189.1\|2626404_2627859_-	hypothetical protein	A0A1D8ETI8	Propionibacterium_phage	5.2e-274	97.7
WP_097776132.1\|2627812_2628007_-	hypothetical protein	A0A1D8ETG8	Propionibacterium_phage	9.7e-27	98.4
WP_060762187.1\|2628124_2628619_-	hypothetical protein	A0A1D8EU54	Propionibacterium_phage	5.3e-69	99.2
WP_081083056.1\|2628873_2629212_-	HNH endonuclease	A0A1D8ETU6	Propionibacterium_phage	4.4e-59	100.0
WP_155642680.1\|2629208_2629385_-	hypothetical protein	A0A1D8ETN0	Propionibacterium_phage	6.1e-28	100.0
WP_060762185.1\|2629644_2629860_-	hypothetical protein	A0A1D8ETT9	Propionibacterium_phage	1.4e-34	100.0
WP_060762184.1\|2629964_2630681_-	sigma-70 family RNA polymerase sigma factor	A0A1D8ETN6	Propionibacterium_phage	8.5e-145	100.0
WP_155642803.1\|2630714_2630945_-	hypothetical protein	A0A1D8ETP3	Propionibacterium_phage	7.9e-36	100.0
WP_060762183.1\|2631006_2631474_-	single-stranded DNA-binding protein	A0A1D8ETY8	Propionibacterium_phage	3.7e-72	88.9
WP_060762182.1\|2631470_2631818_-	hypothetical protein	A0A1D8ETN9	Propionibacterium_phage	1.4e-63	100.0
WP_060762181.1\|2632007_2632373_-	hypothetical protein	A0A1D8ETL8	Propionibacterium_phage	5.3e-66	100.0
WP_060762180.1\|2632372_2632753_-	hypothetical protein	A0A1D8ETM4	Propionibacterium_phage	2.5e-66	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP053853

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection