Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_AP023184 Buttiauxella agrestis strain DSM 9389 1 crisprs DEDDh,DinG,csa3,cas3,WYL 1 2 3 0

Results visualization

1. NZ_AP023184
Click the left colored region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_AP023184_1 995859-996252 Orphan I-E
6 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_AP023184_1 1.4|996070|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT 996070-996102 33 NZ_AP023184.1 775753-775785 0 1.0

1. spacer 1.4|996070|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT matches to position: 775753-775785, mismatch: 0, identity: 1.0

cgtggtgccctggcgcgcgagttgcacgaaggc	CRISPR spacer
cgtggtgccctggcgcgcgagttgcacgaaggc	Protospacer
*********************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_AP023184_1 1.4|996070|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT 996070-996102 33 NZ_CP050106 Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b5, complete sequence 243578-243610 7 0.788
NZ_AP023184_1 1.4|996070|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT 996070-996102 33 NC_012854 Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132505, complete sequence 109826-109858 7 0.788
NZ_AP023184_1 1.4|996070|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT 996070-996102 33 NZ_CP025506 Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvE, complete sequence 235938-235970 7 0.788
NZ_AP023184_1 1.4|996070|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT 996070-996102 33 NZ_CP050111 Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence 243762-243794 7 0.788
NZ_AP023184_1 1.4|996070|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT 996070-996102 33 NZ_CP030763 Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed3, complete sequence 699323-699355 7 0.788
NZ_AP023184_1 1.4|996070|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT 996070-996102 33 NZ_CP022668 Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR3, complete sequence 124044-124076 7 0.788
NZ_AP023184_1 1.4|996070|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT 996070-996102 33 NZ_CP050088 Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b6, complete sequence 381635-381667 7 0.788
NZ_AP023184_1 1.4|996070|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT 996070-996102 33 NZ_CP020897 Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5a, complete sequence 179437-179469 7 0.788
NZ_AP023184_1 1.4|996070|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT 996070-996102 33 NZ_CP013553 Rhizobium phaseoli strain N931 plasmid pRphaN931a, complete sequence 267488-267520 7 0.788
NZ_AP023184_1 1.4|996070|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT 996070-996102 33 NZ_CP013586 Rhizobium phaseoli strain N161 plasmid pRphaN161a, complete sequence 272311-272343 7 0.788
NZ_AP023184_1 1.4|996070|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT 996070-996102 33 NZ_CP013559 Rhizobium phaseoli strain N841 plasmid pRphaN841b, complete sequence 269007-269039 7 0.788
NZ_AP023184_1 1.4|996070|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT 996070-996102 33 NZ_CP013528 Rhizobium phaseoli strain R723 plasmid pRphaR723a, complete sequence 267050-267082 7 0.788
NZ_AP023184_1 1.4|996070|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT 996070-996102 33 NZ_CP013538 Rhizobium phaseoli strain R630 plasmid pRphaR630a, complete sequence 261878-261910 7 0.788
NZ_AP023184_1 1.4|996070|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT 996070-996102 33 NZ_CP013564 Rhizobium phaseoli strain N831 plasmid pRphaN831a, complete sequence 267488-267520 7 0.788
NZ_AP023184_1 1.4|996070|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT 996070-996102 33 NZ_CP013581 Rhizobium phaseoli strain N261 plasmid pRphaN261a, complete sequence 267053-267085 7 0.788
NZ_AP023184_1 1.4|996070|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT 996070-996102 33 NZ_CP025017 Rhizobium leguminosarum strain Norway plasmid pRLN5, complete sequence 203091-203123 8 0.758
NZ_AP023184_1 1.4|996070|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT 996070-996102 33 NZ_CP013576 Rhizobium phaseoli strain N671 plasmid pRphaN671b, complete sequence 268760-268792 9 0.727
NZ_AP023184_1 1.4|996070|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT 996070-996102 33 NZ_CP013548 Rhizobium phaseoli strain R611 plasmid pRetR611a, complete sequence 268758-268790 9 0.727
NZ_AP023184_1 1.4|996070|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT 996070-996102 33 NZ_CP013533 Rhizobium phaseoli strain R650 plasmid pRphaR650a, complete sequence 268758-268790 9 0.727
NZ_AP023184_1 1.4|996070|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT 996070-996102 33 NZ_CP013543 Rhizobium phaseoli strain R620 plasmid pRphaR620a, complete sequence 272170-272202 9 0.727
NZ_AP023184_1 1.4|996070|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT 996070-996102 33 NZ_CP013570 Rhizobium phaseoli strain N771 plasmid pRphaN771b, complete sequence 268760-268792 9 0.727
NZ_AP023184_1 1.5|996131|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT 996131-996163 33 NZ_KP276584 Escherichia coli strain 39R861 plasmid p39R861-4, complete sequence 46111-46143 11 0.667
NZ_AP023184_1 1.5|996131|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT 996131-996163 33 NC_012885 Aeromonas hydrophila plasmid pRA1, complete sequence 111973-112005 11 0.667
NZ_AP023184_1 1.5|996131|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT 996131-996163 33 NC_012886 Escherichia coli plasmid pRAx, complete sequence 30604-30636 11 0.667
NZ_AP023184_1 1.5|996131|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT 996131-996163 33 NZ_CP042479 Citrobacter freundii strain C50 plasmid pC50_001, complete sequence 226592-226624 11 0.667
NZ_AP023184_1 1.5|996131|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT 996131-996163 33 NZ_CP034714 Salmonella enterica subsp. enterica serovar Mikawasima strain RSE15 plasmid pRSE15, complete sequence 109646-109678 11 0.667
NZ_AP023184_1 1.5|996131|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT 996131-996163 33 NZ_MH325469 Enterobacter hormaechei strain Ec13 plasmid pEc13, complete sequence 219115-219147 11 0.667
NZ_AP023184_1 1.5|996131|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT 996131-996163 33 NZ_MH325468 Enterobacter hormaechei strain Ec09 plasmid pEc09, complete sequence 135470-135502 11 0.667

1. spacer 1.4|996070|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050106 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b5, complete sequence) position: , mismatch: 7, identity: 0.788

cgtggtgccctggcgcgcgagttgcacgaaggc	CRISPR spacer
cgcgcacggctggcgcgcgagttgcacgacggc	Protospacer
**.*     ******************** ***

2. spacer 1.4|996070|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT matches to NC_012854 (Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132505, complete sequence) position: , mismatch: 7, identity: 0.788

cgtggtgccctggcgcgcgagttgcacgaaggc	CRISPR spacer
cgcgcacggctggcgcgcgagttgcacgacggc	Protospacer
**.*     ******************** ***

3. spacer 1.4|996070|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025506 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvE, complete sequence) position: , mismatch: 7, identity: 0.788

cgtggtgccctggcgcgcgagttgcacgaaggc	CRISPR spacer
cgcgcacggctggcgcgcgagttgcacgacggc	Protospacer
**.*     ******************** ***

4. spacer 1.4|996070|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050111 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence) position: , mismatch: 7, identity: 0.788

cgtggtgccctggcgcgcgagttgcacgaaggc	CRISPR spacer
cgcgcacggctggcgcgcgagttgcacgacggc	Protospacer
**.*     ******************** ***

5. spacer 1.4|996070|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030763 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.788

cgtggtgccctggcgcgcgagttgcacgaaggc	CRISPR spacer
cgcgcacggctggcgcgcgagttgcacgacggc	Protospacer
**.*     ******************** ***

6. spacer 1.4|996070|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022668 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR3, complete sequence) position: , mismatch: 7, identity: 0.788

cgtggtgccctggcgcgcgagttgcacgaaggc	CRISPR spacer
cgcgcacggctggcgcgcgagttgcacgacggc	Protospacer
**.*     ******************** ***

7. spacer 1.4|996070|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050088 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b6, complete sequence) position: , mismatch: 7, identity: 0.788

cgtggtgccctggcgcgcgagttgcacgaaggc	CRISPR spacer
cgcgcacggctggcgcgcgagttgcacgacggc	Protospacer
**.*     ******************** ***

8. spacer 1.4|996070|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020897 (Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5a, complete sequence) position: , mismatch: 7, identity: 0.788

----cgtggtgccctggcgcgcgagttgcacgaaggc	CRISPR spacer
cgcacgcgg----ctggcgcgcgagctgcacgacggc	Protospacer
    **.**    ************.******* ***

9. spacer 1.4|996070|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013553 (Rhizobium phaseoli strain N931 plasmid pRphaN931a, complete sequence) position: , mismatch: 7, identity: 0.788

----cgtggtgccctggcgcgcgagttgcacgaaggc	CRISPR spacer
cgcacgcgg----ctggcgcgcgagctgcacgacggc	Protospacer
    **.**    ************.******* ***

10. spacer 1.4|996070|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013586 (Rhizobium phaseoli strain N161 plasmid pRphaN161a, complete sequence) position: , mismatch: 7, identity: 0.788

----cgtggtgccctggcgcgcgagttgcacgaaggc	CRISPR spacer
cgcacgcgg----ctggcgcgcgagctgcacgacggc	Protospacer
    **.**    ************.******* ***

11. spacer 1.4|996070|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013559 (Rhizobium phaseoli strain N841 plasmid pRphaN841b, complete sequence) position: , mismatch: 7, identity: 0.788

----cgtggtgccctggcgcgcgagttgcacgaaggc	CRISPR spacer
cgcacgcgg----ctggcgcgcgagctgcacgacggc	Protospacer
    **.**    ************.******* ***

12. spacer 1.4|996070|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013528 (Rhizobium phaseoli strain R723 plasmid pRphaR723a, complete sequence) position: , mismatch: 7, identity: 0.788

----cgtggtgccctggcgcgcgagttgcacgaaggc	CRISPR spacer
cgcacgcgg----ctggcgcgcgagctgcacgacggc	Protospacer
    **.**    ************.******* ***

13. spacer 1.4|996070|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013538 (Rhizobium phaseoli strain R630 plasmid pRphaR630a, complete sequence) position: , mismatch: 7, identity: 0.788

----cgtggtgccctggcgcgcgagttgcacgaaggc	CRISPR spacer
cgcacgcgg----ctggcgcgcgagctgcacgacggc	Protospacer
    **.**    ************.******* ***

14. spacer 1.4|996070|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013564 (Rhizobium phaseoli strain N831 plasmid pRphaN831a, complete sequence) position: , mismatch: 7, identity: 0.788

----cgtggtgccctggcgcgcgagttgcacgaaggc	CRISPR spacer
cgcacgcgg----ctggcgcgcgagctgcacgacggc	Protospacer
    **.**    ************.******* ***

15. spacer 1.4|996070|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013581 (Rhizobium phaseoli strain N261 plasmid pRphaN261a, complete sequence) position: , mismatch: 7, identity: 0.788

----cgtggtgccctggcgcgcgagttgcacgaaggc	CRISPR spacer
cgcacgcgg----ctggcgcgcgagctgcacgacggc	Protospacer
    **.**    ************.******* ***

16. spacer 1.4|996070|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025017 (Rhizobium leguminosarum strain Norway plasmid pRLN5, complete sequence) position: , mismatch: 8, identity: 0.758

cgtggtgccctggcgcgcgagttgcacgaaggc	CRISPR spacer
cgcgcgcggctggctcgcgagttgcacgacggc	Protospacer
**.*     ***** ************** ***

17. spacer 1.4|996070|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013576 (Rhizobium phaseoli strain N671 plasmid pRphaN671b, complete sequence) position: , mismatch: 9, identity: 0.727

cgtggtgccctggcgcgcgagttgcacgaaggc	CRISPR spacer
cgcacccggctggcgcgcgagctgcacgacggc	Protospacer
**.. .   ************.******* ***

18. spacer 1.4|996070|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013548 (Rhizobium phaseoli strain R611 plasmid pRetR611a, complete sequence) position: , mismatch: 9, identity: 0.727

cgtggtgccctggcgcgcgagttgcacgaaggc	CRISPR spacer
cgcacccggctggcgcgcgagctgcacgacggc	Protospacer
**.. .   ************.******* ***

19. spacer 1.4|996070|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013533 (Rhizobium phaseoli strain R650 plasmid pRphaR650a, complete sequence) position: , mismatch: 9, identity: 0.727

cgtggtgccctggcgcgcgagttgcacgaaggc	CRISPR spacer
cgcacccggctggcgcgcgagctgcacgacggc	Protospacer
**.. .   ************.******* ***

20. spacer 1.4|996070|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013543 (Rhizobium phaseoli strain R620 plasmid pRphaR620a, complete sequence) position: , mismatch: 9, identity: 0.727

cgtggtgccctggcgcgcgagttgcacgaaggc	CRISPR spacer
cgcacccggctggcgcgcgagctgcacgacggc	Protospacer
**.. .   ************.******* ***

21. spacer 1.4|996070|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013570 (Rhizobium phaseoli strain N771 plasmid pRphaN771b, complete sequence) position: , mismatch: 9, identity: 0.727

cgtggtgccctggcgcgcgagttgcacgaaggc	CRISPR spacer
cgcacccggctggcgcgcgagctgcacgacggc	Protospacer
**.. .   ************.******* ***

22. spacer 1.5|996131|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KP276584 (Escherichia coli strain 39R861 plasmid p39R861-4, complete sequence) position: , mismatch: 11, identity: 0.667

agctacattagcggtttaattgacgacctggac	CRISPR spacer
caatacgttagcggtttcattgacgacagcttt	Protospacer
 . ***.********** *********     .

23. spacer 1.5|996131|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT matches to NC_012885 (Aeromonas hydrophila plasmid pRA1, complete sequence) position: , mismatch: 11, identity: 0.667

agctacattagcggtttaattgacgacctggac	CRISPR spacer
caatacgttagcggtttcattgacgacagcttt	Protospacer
 . ***.********** *********     .

24. spacer 1.5|996131|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT matches to NC_012886 (Escherichia coli plasmid pRAx, complete sequence) position: , mismatch: 11, identity: 0.667

agctacattagcggtttaattgacgacctggac	CRISPR spacer
caatacgttagcggtttcattgacgacagcttt	Protospacer
 . ***.********** *********     .

25. spacer 1.5|996131|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042479 (Citrobacter freundii strain C50 plasmid pC50_001, complete sequence) position: , mismatch: 11, identity: 0.667

agctacattagcggtttaattgacgacctggac	CRISPR spacer
caatacgttagcggtttcattgacgacagcttt	Protospacer
 . ***.********** *********     .

26. spacer 1.5|996131|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034714 (Salmonella enterica subsp. enterica serovar Mikawasima strain RSE15 plasmid pRSE15, complete sequence) position: , mismatch: 11, identity: 0.667

agctacattagcggtttaattgacgacctggac	CRISPR spacer
caatacgttagcggtttcattgacgacagcttt	Protospacer
 . ***.********** *********     .

27. spacer 1.5|996131|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH325469 (Enterobacter hormaechei strain Ec13 plasmid pEc13, complete sequence) position: , mismatch: 11, identity: 0.667

agctacattagcggtttaattgacgacctggac	CRISPR spacer
caatacgttagcggtttcattgacgacagcttt	Protospacer
 . ***.********** *********     .

28. spacer 1.5|996131|33|NZ_AP023184|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MH325468 (Enterobacter hormaechei strain Ec09 plasmid pEc09, complete sequence) position: , mismatch: 11, identity: 0.667

agctacattagcggtttaattgacgacctggac	CRISPR spacer
caatacgttagcggtttcattgacgacagcttt	Protospacer
 . ***.********** *********     .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 2621031 : 2634750 15 Tupanvirus(33.33%) tRNA NA
DBSCAN-SWA_2 3855420 : 3861250 11 Cronobacter_phage(42.86%) integrase attL 3851474:3851521|attR 3863995:3864042
DBSCAN-SWA_3 3974401 : 4025658 47 uncultured_Caudovirales_phage(28.57%) protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage