CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP053908	Hymenobacter sp. BRD128 chromosome, complete genome	2 crisprs	DEDDh,cas3,csa3,Cas9_archaeal	1	2
NZ_CP053911	Hymenobacter sp. BRD128 plasmid unnamed3, complete sequence	1 crisprs	PD-DExK	1	0
NZ_CP053910	Hymenobacter sp. BRD128 plasmid unnamed2, complete sequence	0 crisprs	csa3,PD-DExK	0	0
NZ_CP053909	Hymenobacter sp. BRD128 plasmid unnamed1, complete sequence	1 crisprs	NA	1	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP053908_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053908_1

850995-851092

Orphan

Consensus_repeat	Method
GCGGGGTAAATTTGTAGTAGATGGCTAAGCGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP053908_1

>merge|NZ_CP053908|1|850995-851092|CRISPRCasFinder
GCGGGGTAAATTTGTAGTAGATGGCTAAGCGGCCCGAGCCGAGCGGGCCAATCAGGCGCGTATCGGCGGGGTAAATTTGTAGTAGATGGCTAAGCGGC

>NZ_CP053908|1|1|850995-851092|CRISPRCasFinder
GCGGGGTAAATTTGTAGTAGATGGCTAAGCGGC	CCGAGCCGAGCGGGCCAATCAGGCGCGTATCG
GCGGGGTAAATTTGTAGTAGATGGCTAAGCGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053908.1\|WP_173110877.1\|850486_850741_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053908.1\|WP_173110859.1\|840138_840654_+\|DUF4112-domain-containing-protein	unknown	unknown	gnl\|CDD\|379180
NZ_CP053908.1\|WP_173110863.1\|841738_842608_+\|sterol-desaturase-family-protein	unknown	unknown	gnl\|CDD\|225546
NZ_CP053908.1\|WP_173110888.1\|855855_856485_-\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|224991
NZ_CP053908.1\|WP_173110871.1\|845482_846850_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP053908.1\|WP_173110867.1\|843375_843708_+\|Dabb-family-protein	unknown	unknown	gnl\|CDD\|214884
NZ_CP053908.1\|WP_173110861.1\|840837_841587_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|275103
NZ_CP053908.1\|WP_173118156.1\|851419_851620_-\|transposase	unknown	unknown	gnl\|CDD\|379129
NZ_CP053908.1\|WP_173110878.1\|851261_851423_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053908.1\|WP_173110875.1\|849030_849483_-\|BLUF-domain-containing-protein	unknown	unknown	gnl\|CDD\|377423
NZ_CP053908.1\|WP_173110880.1\|851692_852124_-\|transposase	unknown	unknown	gnl\|CDD\|290319
NZ_CP053908.1\|WP_173110884.1\|852589_854929_-\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	unknown	unknown	gnl\|CDD\|224446
NZ_CP053908.1\|WP_173110894.1\|858636_859578_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378964
NZ_CP053908.1\|WP_173110890.1\|856555_857536_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381304
NZ_CP053908.1\|WP_173110882.1\|852036_852468_-\|transposase	unknown	unknown	gnl\|CDD\|379129
NZ_CP053908.1\|WP_173110886.1\|854960_855851_-\|FAD-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|224238
NZ_CP053908.1\|WP_173110865.1\|842770_843166_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|380361
NZ_CP053908.1\|WP_173110869.1\|844398_845463_-\|PmoA-family-protein	unknown	unknown	gnl\|CDD\|379468
NZ_CP053908.1\|WP_173110892.1\|857617_858469_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381359
NZ_CP053908.1\|WP_173110873.1\|847098_848967_-\|PAS-domain-containing-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|223715

Protein	Function_ID	Function_description	E-value
NZ_CP053908.1\|WP_173110859.1\|840138_840654_+\|DUF4112-domain-containing-protein	gnl\|CDD\|379180	pfam13430, DUF4112, Domain of unknown function (DUF4112). This family has several highly conserved GD sequence-motifs of unknown function. The family is found in bacteria, archaea and fungi.	7.04889e-38
NZ_CP053908.1\|WP_173110863.1\|841738_842608_+\|sterol-desaturase-family-protein	gnl\|CDD\|225546	COG3000, ERG3, Sterol desaturase [Lipid metabolism].	4.7493e-23
NZ_CP053908.1\|WP_173110888.1\|855855_856485_-\|(2Fe-2S)-binding-protein	gnl\|CDD\|224991	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion].	7.4699e-85
NZ_CP053908.1\|WP_173110871.1\|845482_846850_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	4.7077e-27
NZ_CP053908.1\|WP_173110867.1\|843375_843708_+\|Dabb-family-protein	gnl\|CDD\|214884	smart00886, Dabb, Stress responsive A/B Barrel Domain. The function of this domain is unknown, but it is upregulated in response to salt stress in Populus balsamifera (balsam poplar). It is also found at the C-terminus of a fructose 1,6-bisphosphate aldolase from Hydrogenophilus thermoluteolus.It is found in the pA01 plasmid, which encodes genes for molybdopterin uptake and degradation of plant alkaloid nicotine. The structure of one has been solved and the domain forms an alpha-beta barrel dimer. Although there is a clear duplication within the domain it is not obviously detectable in the sequence.	3.09639e-16
NZ_CP053908.1\|WP_173110861.1\|840837_841587_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|275103	TIGR04283, glycosyl_transferase_family_2, transferase 2, rSAM/selenodomain-associated. This enzyme may transfer a nucleotide, or it sugar moiety, as part of a biosynthetic pathway. Other proposed members of the pathway include another transferase (TIGR04282), a phosphoesterase, and a radical SAM enzyme (TIGR04167) whose C-terminal domain (pfam12345) frequently contains a selenocysteine. [Unknown function, Enzymes of unknown specificity].	2.40407e-86
NZ_CP053908.1\|WP_173118156.1\|851419_851620_-\|transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	4.03135e-13
NZ_CP053908.1\|WP_173110894.1\|858636_859578_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|378964	pfam12833, HTH_18, Helix-turn-helix domain.	1.44024e-16
NZ_CP053908.1\|WP_173110875.1\|849030_849483_-\|BLUF-domain-containing-protein	gnl\|CDD\|377423	pfam04940, BLUF, Sensors of blue-light using FAD. The BLUF domain has been shown to bind FAD in the AppA protein. AppA is involved in the repression of photosynthesis genes in response to blue-light.	1.04894e-40
NZ_CP053908.1\|WP_173110880.1\|851692_852124_-\|transposase	gnl\|CDD\|290319	pfam13586, DDE_Tnp_1_2, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	7.58221e-05
NZ_CP053908.1\|WP_173110884.1\|852589_854929_-\|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit	gnl\|CDD\|224446	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion].	0
NZ_CP053908.1\|WP_173110890.1\|856555_857536_-\|aldo/keto-reductase	gnl\|CDD\|381304	cd19078, AKR_AKR13C1_2, AKR13C family of aldo-keto reductase (AKR). The AKR13C family includes Helicobacter pyroli aldehyde reductase (AKR13C1) and Thermotoga maritima aldo-keto reductase (AKR13C2). Aldehyde reductase (EC 1.1.1.21), also called aldose reductase, is a cytosolic NADPH-dependent oxidoreductase that catalyzes the reduction of a variety of aldehydes and carbonyls, including monosaccharides.	0
NZ_CP053908.1\|WP_173110882.1\|852036_852468_-\|transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	3.89742e-22
NZ_CP053908.1\|WP_173110886.1\|854960_855851_-\|FAD-binding-domain-containing-protein	gnl\|CDD\|224238	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion].	1.87851e-66
NZ_CP053908.1\|WP_173110865.1\|842770_843166_+\|cupin-domain-containing-protein	gnl\|CDD\|380361	cd02233, cupin_HNL-like, Granulicella tundricola hydroxynitrile lyase (GtHNL) and related proteins, cupin domain. This family includes archaeal, eukaryotic, and bacterial proteins homologous to hydroxynitrile lyase from Granulicella tundricola (GtHNL), a novel class of HNLs that does not show any sequence or structural similarity to any other HNL and does not contain conserved motifs typical of HNLs. HNLs comprise a diverse group of enzymes that vary in terms of their substrate specificity, enantioselectivity and the need for a co-factor. In plants, they catalyze the reversible cleavage of cyanohydrins, yielding HCN and aldehydes or ketones. Also included in this family is TM1010 from Thermotoga maritima, a protein of unknown function. Some but not all members of this family have N- or C-terminal carboxymuconolactone decarboxylase domains in addition to the cupin domain. Members of this family belong to the cupin superfamily with a conserved "jelly roll-like" beta-barrel fold capable of homodimerization.	3.21204e-52
NZ_CP053908.1\|WP_173110869.1\|844398_845463_-\|PmoA-family-protein	gnl\|CDD\|379468	pfam14100, PmoA, Methane oxygenase PmoA. This family is a putative methane oxygenase.	8.34887e-82
NZ_CP053908.1\|WP_173110892.1\|857617_858469_-\|aldo/keto-reductase	gnl\|CDD\|381359	cd19133, AKR_AKR5F1, the AKR5F family of aldo-keto reductase (AKR). Klebsiella sp. 2,5-diketo-D-gluconic acid reductase (2,5-DKG reductase) is a founding member of aldo-keto reductase family 5 member F1 (AKR5F1). It catalyzes the reduction of 2,5-diketo-D-gluconic acid (25DKG) to 2-keto-L-gulonic acid (2KLG).	0
NZ_CP053908.1\|WP_173110873.1\|847098_848967_-\|PAS-domain-containing-sensor-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.70666e-31

>NZ_CP053908.1|WP_173110877.1|850486_850741_+|hypothetical-protein
MALDLTQLQTLLNKAEQNEALIGDLQKQFKKVRAVFDEMEKLLEDNYVSKGRKARAAAETDAEAPYGRKKDGTPKQRPGRVKAE
>NZ_CP053908.1|WP_173110875.1|849030_849483_-|BLUF-domain-containing-protein
MIHIAYMSRAVRPLSDQELQALLEQCRRDNARHQVTGILFYSHGNIAQLIEGSPEVLEPLFERIARDGRHSNVRKLVQRPIAARSFAQWSMAFHPLEPAGFEALEGFLLPHRVPPPPSTLTIADALLVDLVRLAVFGNEPAAAPVEQPVR
>NZ_CP053908.1|WP_173110873.1|847098_848967_-|PAS-domain-containing-sensor-histidine-kinase
MPEQHLHSILRRIPAGVATLHGAELRFSFVNAAMRAVLGPQAQEGQLLAACASQLPADLHEVIQQVYQSGQPFITKAYGLPAPPNAGQQTVVRYYDLALEPVQEAGKAISGLLLFAVDVTAQEEARQQAHHLALETRRLDARLRVLTETVPQITFSVDAQGHYEYVSPQWYYFTGQPPIAAVDAIWPLLIHPDDRLRILYQAEQARRTGTGWSYEYRLRRHDGQYRWMLSRALPELHAPNEPVFWHGALTEVHDQRELAEALRRGEAELRFLADSIPELIWTATTEGFIDYYNRYTTDYSGLTLDELGPTGWVSLLHPEEQAEAARYWVQSIASGQTFEGEYRMRRHDGLYRWHIIRARQLVDERGLRWFGTCTDVQDQHLLHQALQTQYDELARAHHDLDTFVYAASHDLRQPALNLRGLFEELRRTASFADPDEAYLLAMVDDALGQLDTTLQDLAATVRSQRAQQEPAEILDLALILEEVVLGLRPQAQLRQAQFEVLVDEAPGLLYSRANLRSVVHNLVSNALKFAHPDRQPRIRLRSYLTAEGQPVLEVQDNGLGMDLANPQAPVFQLFVRQHPTIEGTGVGLYLVQRIVTSQGGHLEVSSTVGEGTTFTIYWTQPA
>NZ_CP053908.1|WP_173110871.1|845482_846850_-|Gfo/Idh/MocA-family-oxidoreductase
MSTETTPRRLFLKQTALAGAGVMLSRVAWSASSYKRILGANDRVRVGVVGFSDRHRGSHIPCFMNHYKELNFEVVGVSDIWKKRRDEGAAIWKEKMQRDVVAYRNNEEMYEKKVVDAVFVSTADFQHALHAIEAVQAGCDVYCEKPFAETMADNRAALKAIKASKQIVQIGSQRRSGANYLAAEQFIKSGKFGPLKMVELTWNVNQPGRWRRPDLVPQLKEADTDWKRYLMNRPAEAFDARKYLEFRLFWPYSSGLPGQWMSHQIDTVHWFTGLPHPRSVVANGGIYMWKDGRKNWDTMTAVFDYGPLDDLANGFQVTFGSRMDNGDEHPAEIYYSNGGELNLNTNTVSPRGGLTQKFAADMKMPAFLLPETSLTQSTEAVAVSANTGGDMLTSNHIRNWMECVRSRKQPHAPVEAGYSHSIATIMTNAAVHTGMKATFDEKTQEVMVGGKVFKY
>NZ_CP053908.1|WP_173110869.1|844398_845463_-|PmoA-family-protein
MKILAVTGAALLVGLASFSTARAQQAEAVRVVKDARHKKVDVFVGQQLFTTFLYPDSLEKPVLYPLRAANGTIVTRGFPLNPKPGDPIDHPHHIGLWFNYENVNGLDFWNNSYAIPPAKKKDYGWIKTDRIVATSSGPTGGLAYHANWTNQQNQVLLEETTRFEFSGTARARTIDRVTTLKAVQAVTFTDAKDGLLGLRLAHELQMPNDQDQKFTDSKGIVTVVKGGTDRVPTGTYLTSAGKRGNDAWSTRGTWCKAYGKLGADSVSVAIIDHPQNPNYPTFWHARGYGLFAANPLGEKIFTNGKSAKNLRLKPGEAVTFRYRILLDEGASTLSARQLNAAAADFAKKSWAASK
>NZ_CP053908.1|WP_173110867.1|843375_843708_+|Dabb-family-protein
MLAPASPQLFVHHVLFYMPATASDADRAKLLEGLQKLRTIPAIQLAHIGTPAATDRAVIERTYTYSWLCFFESPAAELNYQQHPIHDEFRQQYAPYWEKVVIYDSVGPAL
>NZ_CP053908.1|WP_173110865.1|842770_843166_+|cupin-domain-containing-protein
MNSPDQQAAQPAPAQYFTGPAWVKMLAAAANPTDCTVGDVLFEPGSRNNWHAHPHGQLLVITAGTGYYQEKGQPARRLTAGDTVVIAPNVVHWHGAAATDWFAHLAINPAASQGETNWLDPVSDADYRAVQ
>NZ_CP053908.1|WP_173110863.1|841738_842608_+|sterol-desaturase-family-protein
MPLFPVSHPLLKRFDRWAAPALAVAGLALLLLETAHPLRRRTRPRAERWRRNVLLAAPALPAARLTLLPAMVGLAQLAAPAYPARQLARLPAPWRLALEVLLLDYLAYSWHRLLHAPLLWRLHRVHHCDLDMDLTTAWRFHFGEMLASIPYRAGLPALLGVRPATVLAYEAVFEACTAFHHSNWRLPLALESSLLQVLVTPRAHGIHHSVVHREAQSNFGVVLTLWDRLHRTLRLNVPQAAIRIGVPAYPDPATQTVARLLALPLAPPEPWARPDGSVPKRAAGETVES
>NZ_CP053908.1|WP_173110861.1|840837_841587_-|glycosyltransferase-family-2-protein
MTNREFPLAETSLPSELTVSIIIPAYNEAGTISQLLRYLHQHLAAEPRPELVVVDGSSTDGTPHLARQAGATVLASPRKGRAAQLNYGARQASGELLYFLHADSYPPPGFLADLQRAVAQGYPAGCYRLAFDHGHWFLRLSAWCTRLPFTAVRFGDQSLFVRRTLFEQIGGYREDLLLLEDQDIVGRLRARAPFRLLPGVVTTSARKYLANGVFRLQGLFALIAGLYYLGVPQPTLVRFYRRLIRLGKL
>NZ_CP053908.1|WP_173110859.1|840138_840654_+|DUF4112-domain-containing-protein
MPTAPPPPLPATFDADARLRWVEHVARLMDSQFRLPGTRFRFGLDPLLGLIPVVGDLSSTLVSVALLVTMLRHGASGAVVVRMVLNILLDTVLGDIPIIGNVFDFAYKSNERNVALLRRHYAEGRHPGSGKGLVAVAVLGLLAVVGLVVWGSIALLLAAWHYVEMHPIGAH
>NZ_CP053908.1|WP_173110878.1|851261_851423_+|hypothetical-protein
MTLHIVNNLVFTANDVLASIQTPVFKDVRGAPHALAVEAEERRSSGPAATRSA
>NZ_CP053908.1|WP_173118156.1|851419_851620_-|transposase
MAALLPIQRKRRHYLRLAVDALRTICRTGCQWRCLHGNFPPWSAVYYYFRRWQLSERWPCLTDAVN
>NZ_CP053908.1|WP_173110880.1|851692_852124_-|transposase
MGYDAGKRLKGRKRFFLVDTLGNLLASCVVAASCPDGATAARLWEALTVGSEVLDQVQIVFVDGGFGKRFRQHLARRGVQAQVPTGVLAQKGRFCIQAKRWVVERSIAWAGNNRRLAKDYKRKTQHANAWLYVANIRRLARLT
>NZ_CP053908.1|WP_173110882.1|852036_852468_-|transposase
MQQKGYSSDLTARQWQRIAPLFVVQRTSKWPLQAIVNGIFYVLKNGCVWRDVPADLPPWATVYYSFTKWSADGTWERVSGCLSIAARERAKKTPNRRRLSSPVNAGRIRPPARRGWATMRANASKAANAFFWSIRWATCWPAA
>NZ_CP053908.1|WP_173110884.1|852589_854929_-|xanthine-dehydrogenase-family-protein-molybdopterin-binding-subunit
MELESQFSDTNPNAGVVGQPLSRVDGLAKVTGRAKYSAEYNQLPGLVHAVLKTSDVAKGRVTRIDTSAAQRLPGVLAILTHENLPKLAKTPNKPEDRRSFASSPMSFFPMESNQVFYAGQPVAVVVADTLEHAQYAAAQLQVTIVPEVPVSSYQAQNAELYVPKAIRGYSPGVTKRGEAQAAFASAPVQLTATYTHAATHHNPMEPGATTAHWDAPDRLTVYDTTQGVSETQKTLAAMLGLTTEQVRVITKYLGGGFGCKAWVWPHVVLAPLAAKAVGRPVKLVLTRPQQFTGMGFREEQEQTLRLGATREGKLLALIHEKTSTTSPWEDWAETNGRIINMLYDSPTFEGTYRMAHANVMTPTSTRAPGDMPGSFAIECSMDDLAAHLNLDPIQVRLLNYADRDPTNGHPWSSKSLKECYQRGAELFGWSQRNPKNGQTRAGKHLVGYGMASASYPVHSSQGNARVRLYADGHAMVQAGATDLGTGTYTIITQVAADSLGLDPQNVRCELGDTILPTTQWSGGSTAAGRVSSSVYLAAQEVWQKLIKLAVADKQSPLYRAAPAEVVMKQGRLQLKANPAKGEAFGEVMKRANLSDVEGSALGRYGAGYEAPQATANASMNKKEEATEHSMHAFGAHFCEVHVDPELGTVRVTRWVSVMSAGRILYPKTARSQVIGGSIFGIGAALIEASVRDPHLARYTNANLADYHVPVNADIPAMTVEFIDEHDPYVNAMGVKGIGEISIVGVTAAVANVVFHATGKRLRSLPMTPAAVLEAIRQSA
>NZ_CP053908.1|WP_173110886.1|854960_855851_-|FAD-binding-domain-containing-protein
MNNFSYTQAATTKEATGRHKDTPLAAYLAGGTTLLDLMKANLDEHPQLIDINPLPLSSIEQTKDGLRIGALARMSDVGEHPLVVQGYPAVSQSLLLAASPQLRNMASIGGNMLQRTRCGYFRDAAFPCNKRVPGSGCPALVGDNHNLAILGVSESCIATAYPGDLAVALAAFDAVLEPGELIVAVTIPAAAHAQRSAYLKVRERSSYAYALASAAVGLEVQASTIRAARVALGGVGAQPWRSREAEKVLTGQPATEATFRAAATAALKGAQPRKDNAYKVELAQNTLVRALQQVAG
>NZ_CP053908.1|WP_173110888.1|855855_856485_-|(2Fe-2S)-binding-protein
MPDQLSSPVGLPPGDDSRRTFMKQAGGLLGFTLTAPLAGRAERLTAYSTVLEGPSPVSLRINGQARALHLEPRTTLLDALREYLDLTGTKKGCDHGQCGACTVHVDGRRINSCLTLAVMSQGKDITTIEGLAKGDALHPMQEAFLKHDGFQCGYCTPGQIMSGVACVREDHATTDDQAREWMSGNLCRCGAYPNILAAVREVAGRLTKG
>NZ_CP053908.1|WP_173110890.1|856555_857536_-|aldo/keto-reductase
MEKRQLGTSGLEVSALGLGCMGLSFGLGPVTPPAEAVKLIRAAFDRGVTFFDTAEAYGELNEMLVGQALASVRDQVVIATKFGFKEGNAQLGVDSRPERIRLVIEQSLRRMKTDYIDLFYQHRVDPNVPMEDVAGTVKELIAEGKVRHFGLSEAGVPSIRKAHAVQPVAALQSEYSLWWREPEQEILPTLAELGIGFVPFSPLGKGFLTGKIDENTQFDKSDFRNSVPRFSPEARKNNQALVDLLGRIAQQKQATPAQIALAWLLAQKPWIAPIPGTSKLHRLEENLGGASLKLSADDLREIEDAAAQITIEGARYPAALQQLVGR
>NZ_CP053908.1|WP_173110892.1|857617_858469_-|aldo/keto-reductase
MQAVTLNNGVQMPLLGFGVFQVPDPAECERSVLEALRVGYRLLDTAAAYLNEEAVGSAIRQSGVPREELFVTTKLWVQDASYEGAKAAFETSRRKLGLDYLDLYLIHQPFGDVYGAWRAMEELYHAGKIRAIGISNFQPDRVMDFLVHQQVKPAVNQIETHPFHQQVDTQQFLQDNGVQIEAWGPFAEGKNDLFHNEVLAGVAAKYQRSIAQVVLRWLTQRGVVAIPKSVRPERMAENFRIFDFELNAEDMQTIATLDSKTSAFFDHRDPNVVKWIGERKIHD
>NZ_CP053908.1|WP_173110894.1|858636_859578_-|AraC-family-transcriptional-regulator
MALREPTISPLPPTSAPAPPQLTAATSRFNVFERGQFCRQPVSYSRRDFYKISLVTGTGRLSYATRAILLDRPALMFSNPLVPYSWEPISAEQGGYFCLFTEGFLSPDRSVSLQESPLFKVNSDPVYFVNDEQFGTFSHLFCKMAAEMESGYVHKQDLLRTYVQLLLHEALKMQPHTAYHQPPNATARLVSLFLELLERQFPIDAPAPGLQLRTPSDFANQLSVHVNHLNRAVRETTGKTTGTHLAERVVTEAKALLLHTNWGTAEIAYGLGFEYPNYFNNFFKKHTGHAPTTWREQTTLAAGEQGKVLVVAQ

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Crispr_ID: NZ_CP053908_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053908_2

3010970-3011056

Orphan

Consensus_repeat	Method
CATGAAGGCCGACGGCACACCCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP053908_2

>merge|NZ_CP053908|2|3010970-3011056|CRISPRCasFinder
CATGAAGGCCGACGGCACACCCGATATGCGCTATAAATCGAGCAAAACGGTGCAAACCGGCCCCATGAAGGCCGACGGCACGCCCGA

>NZ_CP053908|2|2|3010970-3011056|CRISPRCasFinder
CATGAAGGCCGACGGCACACCCGA	TATGCGCTATAAATCGAGCAAAACGGTGCAAACCGGCCC
CATGAAGGCCGACGGCACGCCCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053908.1\|WP_173115574.1\|2993107_2993383_+\|30S-ribosomal-protein-S18	unknown	unknown	gnl\|CDD\|178997
NZ_CP053908.1\|WP_173115587.1\|3006168_3009885_+\|DNA-polymerase-III-subunit-alpha	unknown	unknown	gnl\|CDD\|235554
NZ_CP053908.1\|WP_173115578.1\|2996178_2998230_+\|thioredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|224250
NZ_CP053908.1\|WP_173115597.1\|3017081_3017669_-\|TM2-domain-containing-protein	unknown	unknown	gnl\|CDD\|377473
NZ_CP053908.1\|WP_173115576.1\|2993392_2993836_+\|50S-ribosomal-protein-L9	unknown	unknown	gnl\|CDD\|234659
NZ_CP053908.1\|WP_173115591.1\|3013194_3013692_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053908.1\|WP_173115585.1\|3004791_3005859_-\|fatty-acid-desaturase	unknown	unknown	gnl\|CDD\|366126
NZ_CP053908.1\|WP_173115603.1\|3021360_3021591_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274783
NZ_CP053908.1\|WP_173115599.1\|3017818_3018328_-\|gamma-carbonic-anhydrase-family-protein	unknown	unknown	gnl\|CDD\|100051
NZ_CP053908.1\|WP_173115601.1\|3018377_3019367_-\|radical-SAM-protein	unknown	unknown	gnl\|CDD\|223609
NZ_CP053908.1\|WP_144849028.1\|3010005_3010335_+\|thioredoxin	unknown	unknown	gnl\|CDD\|200072
NZ_CP053908.1\|WP_173115593.1\|3013737_3014223_-\|Lrp/AsnC-ligand-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|183019
NZ_CP053908.1\|WP_173115581.1\|3002597_3003887_-\|aminopeptidase-P-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|182804
NZ_CP053908.1\|WP_173118413.1\|2998349_3000848_+\|primosomal-protein-N'	unknown	unknown	gnl\|CDD\|235514
NZ_CP053908.1\|WP_173115595.1\|3016034_3016736_-\|TM2-domain-containing-protein	unknown	unknown	gnl\|CDD\|377473
NZ_CP053908.1\|WP_173118419.1\|3020330_3020996_-\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|225439
NZ_CP053908.1\|WP_173115579.1\|3000932_3001550_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237030
NZ_CP053908.1\|WP_173115589.1\|3011214_3013131_+\|flotillin-family-protein	unknown	unknown	gnl\|CDD\|225177
NZ_CP053908.1\|WP_173118417.1\|3019439_3020105_-\|endonuclease-III	unknown	unknown	gnl\|CDD\|223255
NZ_CP053908.1\|WP_173115583.1\|3004011_3004689_+\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239489

Protein	Function_ID	Function_description	E-value
NZ_CP053908.1\|WP_173115574.1\|2993107_2993383_+\|30S-ribosomal-protein-S18	gnl\|CDD\|178997	PRK00391, rpsR, 30S ribosomal protein S18; Reviewed.	5.97146e-32
NZ_CP053908.1\|WP_173115587.1\|3006168_3009885_+\|DNA-polymerase-III-subunit-alpha	gnl\|CDD\|235554	PRK05673, dnaE, DNA polymerase III subunit alpha; Validated.	0
NZ_CP053908.1\|WP_173115578.1\|2996178_2998230_+\|thioredoxin-domain-containing-protein	gnl\|CDD\|224250	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP053908.1\|WP_173115603.1\|3021360_3021591_-\|hypothetical-protein	gnl\|CDD\|274783	TIGR03789, pdsO, proteobacterial sortase system peptidoglycan-associated protein. A newly defined histidine kinase (TIGR03785) and response regulator (TIGR03787) gene pair occurs exclusively in Proteobacteria, mostly of marine origin, nearly all of which contain a subfamily 6 sortase (TIGR03784) and its single dedicated target protein (TIGR03788) adjacent to to the sortase. This protein family shows up in only in those species with the histidine kinase/response regulator gene pair, and often adjacent to that pair. It belongs to the pfam00691 domain family, which is the peptidoglycan-associated region of flagellar motor protein MotB, OmpA (whose N-terminal region forms an outer membrane beta barrel), and peptidoglycan-associated lipoprotein Pal. Its function is unknown. We assign the gene symbol pdsO, for Proteobacterial Dedicated Sortase system OmpA family protein. [Protein fate, Protein and peptide secretion and trafficking].	1.66599e-05
NZ_CP053908.1\|WP_173115576.1\|2993392_2993836_+\|50S-ribosomal-protein-L9	gnl\|CDD\|234659	PRK00137, rplI, 50S ribosomal protein L9; Reviewed.	8.16829e-51
NZ_CP053908.1\|WP_173115597.1\|3017081_3017669_-\|TM2-domain-containing-protein	gnl\|CDD\|377473	pfam05154, TM2, TM2 domain. This family is composed of a pair of transmembrane alpha helices connected by a short linker. The function of this domain is unknown, however it occurs in a wide range or protein contexts.	1.25788e-14
NZ_CP053908.1\|WP_173115585.1\|3004791_3005859_-\|fatty-acid-desaturase	gnl\|CDD\|366126	pfam00487, FA_desaturase, Fatty acid desaturase.	1.04523e-11
NZ_CP053908.1\|WP_173115599.1\|3017818_3018328_-\|gamma-carbonic-anhydrase-family-protein	gnl\|CDD\|100051	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.	2.35915e-75
NZ_CP053908.1\|WP_173115601.1\|3018377_3019367_-\|radical-SAM-protein	gnl\|CDD\|223609	COG0535, COG0535, Predicted Fe-S oxidoreductases [General function prediction only].	2.29343e-28
NZ_CP053908.1\|WP_144849028.1\|3010005_3010335_+\|thioredoxin	gnl\|CDD\|200072	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport].	5.75393e-49
NZ_CP053908.1\|WP_173115593.1\|3013737_3014223_-\|Lrp/AsnC-ligand-binding-domain-containing-protein	gnl\|CDD\|183019	PRK11179, PRK11179, DNA-binding transcriptional regulator AsnC; Provisional.	1.20097e-44
NZ_CP053908.1\|WP_173115581.1\|3002597_3003887_-\|aminopeptidase-P-N-terminal-domain-containing-protein	gnl\|CDD\|182804	PRK10879, PRK10879, proline aminopeptidase P II; Provisional.	2.00067e-87
NZ_CP053908.1\|WP_173118413.1\|2998349_3000848_+\|primosomal-protein-N'	gnl\|CDD\|235514	PRK05580, PRK05580, primosome assembly protein PriA; Validated.	0
NZ_CP053908.1\|WP_173115595.1\|3016034_3016736_-\|TM2-domain-containing-protein	gnl\|CDD\|377473	pfam05154, TM2, TM2 domain. This family is composed of a pair of transmembrane alpha helices connected by a short linker. The function of this domain is unknown, however it occurs in a wide range or protein contexts.	3.84759e-08
NZ_CP053908.1\|WP_173118419.1\|3020330_3020996_-\|OmpA-family-protein	gnl\|CDD\|225439	COG2885, OmpA, Outer membrane protein and related peptidoglycan-associated (lipo)proteins [Cell envelope biogenesis, outer membrane].	4.49237e-48
NZ_CP053908.1\|WP_173115579.1\|3000932_3001550_-\|hypothetical-protein	gnl\|CDD\|237030	PRK12270, kgd, multifunctional oxoglutarate decarboxylase/oxoglutarate dehydrogenase thiamine pyrophosphate-binding subunit/dihydrolipoyllysine-residue succinyltransferase subunit.	3.70466e-07
NZ_CP053908.1\|WP_173115589.1\|3011214_3013131_+\|flotillin-family-protein	gnl\|CDD\|225177	COG2268, COG2268, Uncharacterized protein conserved in bacteria [Function unknown].	3.62259e-65
NZ_CP053908.1\|WP_173118417.1\|3019439_3020105_-\|endonuclease-III	gnl\|CDD\|223255	COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair].	2.3654e-46
NZ_CP053908.1\|WP_173115583.1\|3004011_3004689_+\|phosphatase-PAP2-family-protein	gnl\|CDD\|239489	cd03395, PAP2_like_4, PAP2_like_4 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	3.56185e-17

>NZ_CP053908.1|WP_144849028.1|3010005_3010335_+|thioredoxin
MAHKAIEITDANFEEIINSDKPVLVDFWAEWCGPCRMVGPVVEELAGEYEGKAIIGKVDVDANPQTSMKFGIRSIPTLLVFKNGQIVDKQVGAVPKHVLAQKLEAQVTA
>NZ_CP053908.1|WP_173115587.1|3006168_3009885_+|DNA-polymerase-III-subunit-alpha
MPVFSHLHSHTQYSLLDGQASIGALMKKAQADGMPAVALTDHGNMFGAFNFVAEANKYNVKPIVGCEFYMVADRHKKTFLREKGEKDERFHQLLLAKDQAGYHNLSKLCSMSFIEGVYSKFPRIDKELLLKYHEGLIATSCCIGAEIPQAILFESEAKAEELLKWWLDVFGDDYYIEIQRHGLMNFDGTGKSQEDVNQVLLGFAKKYNVKVICTNDSHYVDQTDYAAHDLLLCVNTAEERSIPVGDFETNYYTVLTADQRVHYDTLDNLRGAHGYDENARRMLSRIDEELQKPPKQRRRRFGFANDQFFFKSQAQMNELFSDVPESVDNTNEIVDKITPPKLARDILLPNFPIPAPFANADEFLRELTYVGAFGPGAGSGSVTMTKPPRYAERTPKVEERLDYELRIIQTMGFAGYFLITQDFINHGRNIGVAVGPGRGSAAGSAVAYCVGITNIDPIKYSLLFERFLNPERVSMPDIDIDFDDVNRQKVIDYVVGKYGKTQVAQIITFGTMAAKSSIKDVARAMELPLPAANEIAKLVPEKPGTTLAGAFRDVPELAAIRNDQSDLKGQILALAERLEGSVRNTGIHAAGVIIAPDDITNYIPVSTSKDSDLLITQFDGKVIESAGMLKMDFLGLKTLTIIVDALNLIERNHGVKIDIDDIPLDDPKTYALYQRGDTIGTFQFESEGMRMYLKDLKPTNIEDLIAMNALYRPGPMQFIPDFINRKHGREPVEYPHDLLKPILEYSQGIMVYQEQIMQTAQILAGYSLGGADLLRRAMGKKDMKKMAMEREKFIKGAGELHKIPAKKANEVFDVMEKFAEYGFNRSHSAAYSVVAYQTGYLKANYPAEYMAAVLTNNMGDIKKVTFFIEEARKQGVAVLGPDVNESEQKFNVPRENQIRFGLAAVKGAGEAAVLELVDERKKSGPFTDVFDFAKRVNLRSVNKKTWESLAQAGAFDSFEKYNRRQFMDAPAGDQNLIEKAMKLGQQHQAAKESAQHSLFGASAFGAVAAPLPKVNDLEEWSAPEKLRREKEVVGFYLSGHPLDTYRMEIDAYCTCPLDQLDAQKGKDVNVAGLISGVQFRTTKSGQPMASFNIEDYDSSINLALFRDDYTRFGPLINPKNYHNEQVPPLFIRGKMELRYGTQDQWELKIKNMEPLAQVADKLSKGVRVKLDLRTVTGPMIDRLQEAIEHAKGSKRLEIQFVEPHERLAVDMFSRRFQIEPKTFIEKMREFELDVCALI
>NZ_CP053908.1|WP_173115585.1|3004791_3005859_-|fatty-acid-desaturase
MKVLAVSTDPVYTRAATPSRLATWLARYLQDERDLPFAYLILKISATMLPLAVLLFVPALRGAWWWATFGLFFFFSNARFKGPFGLMLHCTSHRVLFKKKHGWLNHYIPWVLGPLFGQTPESYFVHHMGMHHPENNLPDDESSTMFYQRDSLRGFLRYLGDFLFLGVAKLASYFTLRNKATLRYRLLRGEILYAGLTLALAFVNLPATLAVFVAPFLLSRVIMMLGNWAQHAFIDAASPENCYRNSVTCINTSYNHKCWNDGYHISHHLKPALHWTDHPHHFRQNLAQYASNEAIVFDGIHFLHIFFYLMAKRYDLLARHFVLLDGTARTEAEVVDLLRRRTQRIGREVLVPQLV
>NZ_CP053908.1|WP_173115583.1|3004011_3004689_+|phosphatase-PAP2-family-protein
MLYLLRQTRTFLIPYAALLLLLGTVLLATPKHTAFFWVNSHNTPFFDQFFRPFTNVGDGLFYVLITLGLLFARFRWALVSFVCFAVTSLAAQIGKQLIFTGHPRPFRYFSENPGFPALHVVEGVVMGTLKSFPSGHSTSAFSVFLLLTLLVKDKRWGYAFVALAALTAYSRVYLAQHFVEDVYAGSVLGTGLTLAVLAWLLPYLEQHPKAWYQWRLRRPGQTARP
>NZ_CP053908.1|WP_173115581.1|3002597_3003887_-|aminopeptidase-P-N-terminal-domain-containing-protein
MRYGPIAPELFVENRRRFRELLPPQSLAIFNANDILPTNADGTLALKQNTDLFYLSGVDQEETILVICPDAALEKHREILFVRETSELILVWEGYKLTKEEARQVSGIPTIMWVDQFETVLPALMNEAEYVYLNSNEHIRAVVEVETRDARLIKSLQRRYPLHQYRRAAKLTHQLRAIKSSEEIRLMRRACEITGNAFRRLLGFVKPGVWEYEVEAEIMHEFIRSGSRGPAYTSIIGSGESATILHYISNDRQCQDGDVLLLDFGAEYANYAADLTRSIPVSGTYTPRQRQVYEAVLRVFKFAKTQLVAGNEIEAYHKAVGQAMERELIGLDLLNASDVKNQDPDAPLYKKYFPHGTSHYLGLDVHDVGYKYRKFEAGMVYTIEPGIYIREEKLGIRLENDFLITPNGNEDLMADIPLELADIERLMKR
>NZ_CP053908.1|WP_173115579.1|3000932_3001550_-|hypothetical-protein
MQNLTSTLGRLAVVLTGALALGSCSRANYAFLPKADSYLGTTAAAPKAHYAAPVATSTATPAQAAEASQVATPEAPAIAPEVTVATAPSAAATPKTAASAETEAVVAAAPTTMATTPVAAPKLNVVQRLALNKVMRKLNKQTQKISARQGDNTASTARGAVSGNLKIGIVLLLIGLLVGLLNGFIGAIIAVIGLIFIVLWLLDQI
>NZ_CP053908.1|WP_173118413.1|2998349_3000848_+|primosomal-protein-N'
MPDRVTLFVDVILPLPLPKLYTYRVPFELNDNVVIGGRVIVQFGAKRTLSCIVAAVHETPPKDYQAKYILEFIDDAPVVTQPQLKLFRWISEYYLCTLGEVINAALPAALKLSSESRIQLHPAYLTEGSPYPLDEKEQRIVDNLRTEDGKALTFTEVGDLLGIASFHKVIKSLMQKDIIFLFEQLSDKYTPKVLKKVRLAHHYVSTAAVERLFEDLAAKPKQVDVLLKYLQRVPVHHNEHLNHQGIEKAYLTSSPHLSASAVNTLIKNGVLEQFDQIVSRFPLEENPLAQMPYQLSEAQTTARDEVMTLFDQKNIVLLHGVTGSGKTEIYIDLIRQALDGGGQVLYLLPEIALTAQIVTRLMRVFGSRLGVYHSKFSDNERVEVWNGVLSGRFQVVVGVRSAVFLPFDNLSLIIVDEEHESSYKQYDPAPRYNAREVALMMGNFQGAKVLLGSATPAVETYYQARLGRYGLVTLSKRFGEAGMPEIELIDTRKLRAEKKMHNHFSADLLNAMESKIAQQEQVILFQNRRGYAPVTECNDCGYIPKCQSCAVSLSYHKHAHELRCHYCGYHEGMPTQCPACGSRALRTQGFGTEKLEDDLKIMLPQANVQRMDLDTTRAKNAYQQIIGDFEQQKTNVLVGTQMVTKGLDFENVSLVGIVNADAIIHYPDYRAHERAYQMFVQVSGRAGRKGKKGKVLIQTGDPTQVIFDKVIRNDYLEFYEYEITQRREHEYPPFARMIRLTVKHMDQELAQQAAILLTQELADRLGRGPVLGPEAPYIFRIRNFFLQEIVIKLSREHTVLKAAKLAICAALEVVRDQKEYRQARLIVDVDPM
>NZ_CP053908.1|WP_173115578.1|2996178_2998230_+|thioredoxin-domain-containing-protein
MSASPTQPANRLAHETSPYLLQHAHNPVDWYPWGPEALARAQAEQKPILVSIGYAACHWCHVMERESFENEQVARVMNEHFVCIKVDREERPDVDQIYMDAVQAMGIQGGWPLNVLLTPAAKPFYGGTYFPHSNWVKLLENVAQAYAGEHRAELDGSAERFAQVLQASELEKYGAAGELASTGVTDEEFKLLVYNLAQRFDRERGGTNRAPKFPMPSIWRFLLRAHHISGSQQVLSQVNRTLREMAWGGIYDQVGGGWARYSVDAEWLVPHFEKMLYDNGQLLSLYSEAFQVTQDPLYREVVFQTANWVRRELTNPEGGFYSSLDADSEGEEGKFYVWTREELQRILGDEEPLASAYYQCTGVGNWEHGRNILHRRQPDEDFAQEHNLEPHVLAKLIHGWQKALLAARAKRVRPGLDDKVLTGWNALMLSGLLAAYRAFGEQEFLDLALRNAEFLQANLRQGPRLYRTWKNGRATINGFLEDYALVIEAYVSLYEATFTESWLHEAKTLASYVLDNFFDPAEQQFFYTDASAEPLIARKKELFDNVIPGSNSVMAHNLLRLGRHLENTDYQSLAAAMLAQAQALVVREPQHLTNWASLYVALLRPGAEVAIAGPQAEKFRQQLGRHFLPNEVLAGTLTTSNLPLLEGRSGTDRTTIYVCRHRACQLPVHTVAEALAQLTLPEQ
>NZ_CP053908.1|WP_173115576.1|2993392_2993836_+|50S-ribosomal-protein-L9
MEIILKDDVKGLGYKNDLVTVKSGYGRNYLLPQGLAILADKSAKKIVAENVRQAAHKAEKVKADAQAVADQIGAQVFDLPAKVGETGKIFGRVTTLQLAEALKNKGIDVDRKRLSFDQEPTTAGDYTATLNLHKEVKHTINFRVVAA
>NZ_CP053908.1|WP_173115574.1|2993107_2993383_+|30S-ribosomal-protein-S18
MATQNNRNNNNRDNGNKPVDTRNKYCRFKKNGIKYVDYKDPNFLLKFVNEQGRLLPRRITGTSLKFQRKVAQAVAKARHLALMPYVTDALK
>NZ_CP053908.1|WP_173115589.1|3011214_3013131_+|flotillin-family-protein
MLLALTVPVFLTFLGVLTGLLVLVLLAKSLLGIVVIGELEVGIVAKKFARTSLAAGRLIALEGEAGLQADTLAPGWHFFLWPWQFSVSKEPVTVVPQGEIGLVVANGGAVIPPSHMLGRVVACDDYQDARTFLTQGGEKGRQLGILTAGTYRINTALFTVITRRNAESMGMNPNELAVYRVVPDAVGIVTTLDGVPIEPGEIAGPVIPKHDNFQDAQRFLVAGGRRGLQEQVLLSGAWNLNPWFCRVEQVPMTEIPIGHVGVVISFVGRPAQDVSGADFTHGNLVEVGHKGIWVTPLYPGRQPLNTRIMRVELVPTTNIVLNWANRTEAHGYDNSLSSITVRSRDGFSFNLDVAQIIHVAALDAPRVISRVGSMQNLVDHVLEPIVGNYFRNSSQEYTVLDYLTNRAERQRDAATFIRTALSAYNVQAVDTLIGDIVPPAQLMTTQTDRKLAEEQRKTYEVQQAAQTQRQALVRETSIADIQSELVKSEQGVNIAELNANSQVKKVRGEAEAAKLRAGGEAESTRLRAIADSEATRLRGVGEAEAIRAIGQAKAEAYQVGVASLGTREFTALQLMQIIGDRQVKITPDVQANSAGTGAGGGLVEALVGLLVQGQQATPPPATPSNPPLSAPIESQKPG
>NZ_CP053908.1|WP_173115591.1|3013194_3013692_+|hypothetical-protein
MNSTTYFLLPGLLWNQLASAQRVEFKGTQVVNNKLITLFIKQTYLLRKEAINQHFYKKISPAPNWLIPTPGDKLVTYYQLGDTLFFYRSGQTVTLLGCNLTNAARFAQAVPFLASTKDVLFAGKYKTRNVLTITEAARNEQYTLTLTFQDKHIRRLFFYLDTSTF
>NZ_CP053908.1|WP_173115593.1|3013737_3014223_-|Lrp/AsnC-ligand-binding-domain-containing-protein
MSRPYELDDIDRRILSLLVQDAKLPYSEIARQLGVSGGTIHSRMARLEELGIVRGATLDLDLTKVGFGIQAFLGIFLLKSSYCDSVIARLRGIPEVISVHFTTGSYNLFARLACRDTQHLRNVLHDMVQQIEGVERTETLISLEEVFSRTVQLDEPIMAAG
>NZ_CP053908.1|WP_173115595.1|3016034_3016736_-|TM2-domain-containing-protein
MALIITRFRYWLPLLALVTLGACQRASYSFQAPVGARQSLPNAKSVDSAAYSAMAVPDALIPAFRHSAGRLRRAKFLSRHLSKPMAGLPAPLLLPARQAAGSCRAASRLAARQEPAPKASPAHWRTKGIAVLLALFLGGIGAHLFYLGYYGRGTAYLVATLVALGLIVVAIVGSIATLYGGGAGFVGITIAAVIINSAVSILGLVDIIRIIIGNLKPKNGEYFPGFFQTHDKS
>NZ_CP053908.1|WP_173115597.1|3017081_3017669_-|TM2-domain-containing-protein
MRNFYHLFVALGVAAVSLSSCSRSNYAFNNSAPAYLGSAQVHAPIAAALTPEAAPTAATTDGTLQVAEVAPAKHSAHRAGTHAAAKAAIITSIATKKAVIAKIDRKAFKKELKRQLAAAPQGTAAEGKSQLVAAILCFFLGGLGVHDFYLGRVGKGILQIFLSLIAIGFILVIIDFIRILIGTEKPKNGDYAKKL
>NZ_CP053908.1|WP_173115599.1|3017818_3018328_-|gamma-carbonic-anhydrase-family-protein
MPALILPVHGILPTIGPDCFLADNATLVGDVVLGRGCTVWFTAVIRGDVNSIRIGDETNIQDGAVLHCTYERAALTIGSRVSIGHRALVHGCTVADDVLIGMGAIVMDHAVVGAGCIIAAGAVVLENTLCEPGYLYAGVPARKIKPVSEAQAAGLRRTAANYRLYASWF
>NZ_CP053908.1|WP_173115601.1|3018377_3019367_-|radical-SAM-protein
MRLVRHPVLCNYYVTYRCNAKCAFCDIWEKPSPYITLADVEANLRDLKRLGVKVIDFTGGEPLLHRQLPEFLGLARQLGFITTVTTNGLLYPKNADKLRGKVDMLHFSLDSADRATHDQGRGVACYDFVLESIRVAKELGERPDILFTVFRHNLADLEAVYREITQPNGLMLILNPAFEYGEVETGEQLTEAELNYLSAFGKRKGVYLNEGFIALRRDGGNHVAAPVCRAASTTLVISPNNELVLPCYHLGEQKFPINGQLFDVYNAPATQRLAALEGRLPQCEGCTINCYMQPSFAVETSKYFWQALPSTLKYNWEKGTWKRLLSTKN
>NZ_CP053908.1|WP_173118417.1|3019439_3020105_-|endonuclease-III
MRELISTLLSHRTTHADEELAYDRMLEAFGDWEGVLHAPLNDLIHAIRTTRWPATQAPRIQDILGRIKAETGGSFSLDFLADWDTERAMQWLTDMPGIGLKTASLVLLFNFRKPVLPVDAHVHRVMQRLGVLGPKVSVEKAHPVLLALLKPHLDPEGLFNFHKHNYWHGQQICFFLKPNCPRCPLKGLCSYYQEHYGEATPEALAATPTHWDAAAWGKLPH
>NZ_CP053908.1|WP_173118419.1|3020330_3020996_-|OmpA-family-protein
MLGHFAQAQTTTVTTDKPAGMSKTLKGGLIGGLGGAVVGGAVGRAFGKSHTAAGAILGAAVGGGAGALIGRKMDKQAAELRRDLEGAKVERVGEGIKITFASGILFGSNSSTLTPDATGNIDELATTLQKYADTNVVIDGHTDNSGTDAINQPLSQRRAQAVANELTTKGVEASRITATGYGSTQPVGDNTTAAGKAANRRVEVAIFANEKMKKAAKRGQL
>NZ_CP053908.1|WP_173115603.1|3021360_3021591_-|hypothetical-protein
MLAGSVAQAQDHPKGWSRKAKGAAIGGAGGAVLGGLVGGGKGALIGAGAGVVGGGLVGRNQDKKKDPARYNHYRNK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP053908_1	1.1\|851028\|32\|NZ_CP053908\|CRISPRCasFinder	851028-851059	32	NZ_AP022333	Methylosinus sp. C49 isolate Methylosinus sp. C49 plasmid pMSC49a, complete sequence	288549-288580	8	0.75
NZ_CP053908_1	1.1\|851028\|32\|NZ_CP053908\|CRISPRCasFinder	851028-851059	32	NC_023497	Amycolatopsis keratiniphila plasmid pXL100, complete sequence	6241-6272	9	0.719

1. spacer 1.1|851028|32|NZ_CP053908|CRISPRCasFinder matches to NZ_AP022333 (Methylosinus sp. C49 isolate Methylosinus sp. C49 plasmid pMSC49a, complete sequence) position: , mismatch: 8, identity: 0.75

ccgagccgagcgggccaatcaggcgcgtatcg	CRISPR spacer
tcgagccgagccggccaatccggcgccgacgc	Protospacer
.********** ******** *****  *.

2. spacer 1.1|851028|32|NZ_CP053908|CRISPRCasFinder matches to NC_023497 (Amycolatopsis keratiniphila plasmid pXL100, complete sequence) position: , mismatch: 9, identity: 0.719

ccgagccgagcgggccaatcaggcgcgtatcg	CRISPR spacer
agcggccgagcgggcgaatcacgcgcgaagcc	Protospacer
   .*********** ***** ***** * *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3838739 : 3909448

Orpheovirus(20.0%)

tRNA,transposase,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_173116912.1\|3838739_3840251_+\|tRNA	glycine--tRNA ligase	A0A2I2L3K8	Orpheovirus	7.6e-42	29.6
WP_173116913.1\|3840303_3842742_+	MMPL family transporter	NA	NA	NA	NA
WP_173116914.1\|3842883_3846333_+\|tRNA	isoleucine--tRNA ligase	A0A2I2L3Y0	Orpheovirus	1.1e-152	30.7
WP_173118511.1\|3846533_3847151_+	lipoprotein signal peptidase	NA	NA	NA	NA
WP_173116915.1\|3847427_3849239_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	5.3e-18	31.6
WP_173116916.1\|3849422_3851903_+	ribonuclease R	Q0GXV6	Lactococcus_phage	4.8e-62	32.1
WP_173118513.1\|3852120_3852996_+	polyprenyl synthetase family protein	NA	NA	NA	NA
WP_173118515.1\|3853092_3853656_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_173116918.1\|3853750_3854023_+	PLDc_N domain-containing protein	NA	NA	NA	NA
WP_173116920.1\|3854113_3854383_-	hypothetical protein	NA	NA	NA	NA
WP_173116922.1\|3854355_3854742_-	DUF2939 domain-containing protein	NA	NA	NA	NA
WP_173116924.1\|3854851_3855736_+	glycerophosphodiester phosphodiesterase	NA	NA	NA	NA
WP_173116926.1\|3855909_3856296_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_173116928.1\|3856790_3857108_-	DUF721 domain-containing protein	NA	NA	NA	NA
WP_173116930.1\|3857203_3858331_-	DNA replication/repair protein RecF	NA	NA	NA	NA
WP_173116932.1\|3858407_3859589_+	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	NA	NA	NA	NA
WP_173118517.1\|3859779_3860448_+	cytochrome C biosynthesis protein	NA	NA	NA	NA
WP_173116934.1\|3860600_3861077_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.1e-20	41.4
WP_157563949.1\|3861264_3861648_+	TraR/DksA C4-type zinc finger protein	NA	NA	NA	NA
WP_173116936.1\|3861813_3863784_+	pseudouridine synthase	NA	NA	NA	NA
WP_173116938.1\|3863880_3864639_+	type III pantothenate kinase	NA	NA	NA	NA
WP_173116940.1\|3864625_3865954_+	hypothetical protein	NA	NA	NA	NA
WP_173116942.1\|3865956_3866529_+	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_173116944.1\|3866540_3866795_+	hypothetical protein	NA	NA	NA	NA
WP_173116946.1\|3866909_3869039_+	SurA N-terminal domain-containing protein	NA	NA	NA	NA
WP_173116948.1\|3869180_3871031_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_173116950.1\|3871854_3873729_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	1.8e-64	28.9
WP_173116952.1\|3873868_3874489_+	hypothetical protein	NA	NA	NA	NA
WP_173116954.1\|3875433_3875898_-	TPM domain-containing protein	NA	NA	NA	NA
WP_173116956.1\|3876034_3876667_-	LemA family protein	NA	NA	NA	NA
WP_173116958.1\|3876848_3877862_+	NTP transferase domain-containing protein	I7I009	Enterobacteria_phage	9.3e-12	26.6
WP_173116960.1\|3877882_3878725_-	pantoate--beta-alanine ligase	NA	NA	NA	NA
WP_173116962.1\|3878841_3879654_+	glycogen/starch synthase	NA	NA	NA	NA
WP_173116964.1\|3879875_3881711_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	A7IW18	Paramecium_bursaria_Chlorella_virus	1.3e-109	40.1
WP_173116966.1\|3881811_3883248_+	hypothetical protein	NA	NA	NA	NA
WP_173116968.1\|3883302_3883686_+	RidA family protein	NA	NA	NA	NA
WP_173116970.1\|3883721_3885269_+\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
WP_173116972.1\|3885619_3886804_+	T9SS type A sorting domain-containing protein	NA	NA	NA	NA
WP_173116974.1\|3887299_3888787_+	T9SS type A sorting domain-containing protein	NA	NA	NA	NA
WP_173116976.1\|3889197_3897111_-	T9SS type A sorting domain-containing protein	NA	NA	NA	NA
WP_173116978.1\|3897667_3898081_+	hypothetical protein	NA	NA	NA	NA
WP_173116980.1\|3899247_3899448_-	hypothetical protein	NA	NA	NA	NA
WP_173118519.1\|3899681_3900596_+	histone deacetylase	NA	NA	NA	NA
WP_173116982.1\|3900656_3900923_-	CsbD family protein	NA	NA	NA	NA
WP_173116984.1\|3900989_3901646_-	hypothetical protein	NA	NA	NA	NA
WP_173116986.1\|3901670_3902459_-	hypothetical protein	NA	NA	NA	NA
WP_173116988.1\|3902702_3904253_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_173116990.1\|3904389_3904800_-\|transposase	transposase	A0A1V0SCG6	Indivirus	4.8e-07	26.8
WP_173116992.1\|3904997_3905300_+\|transposase	transposase	NA	NA	NA	NA
WP_173116994.1\|3905296_3906178_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	1.7e-33	35.7
WP_173118521.1\|3906842_3907355_+\|transposase	IS1 family transposase	NA	NA	NA	NA
WP_173116996.1\|3907559_3908582_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
WP_173116998.1\|3908720_3909227_+	hypothetical protein	NA	NA	NA	NA
WP_173117000.1\|3909184_3909448_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_2

4533272 : 4598138

Erwinia_phage(12.5%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_173117945.1\|4533272_4534700_-\|protease	ATP-dependent protease ATPase subunit HslU	A0A2H5BJT2	Erwinia_phage	1.1e-42	27.6
WP_173117948.1\|4534808_4535846_-	type IX secretion system protein PorQ	NA	NA	NA	NA
WP_173117950.1\|4535926_4538434_-	endopeptidase La	A0A0R6PGP8	Moraxella_phage	6.2e-166	42.3
WP_173118581.1\|4538844_4540755_+	OmpA family protein	NA	NA	NA	NA
WP_173117952.1\|4541857_4543579_-	DNA polymerase/3'-5' exonuclease PolX	NA	NA	NA	NA
WP_173117954.1\|4543739_4544186_+	hypothetical protein	NA	NA	NA	NA
WP_173117956.1\|4544232_4544643_+	EVE domain-containing protein	NA	NA	NA	NA
WP_173117958.1\|4544776_4546369_+	hypothetical protein	NA	NA	NA	NA
WP_173117960.1\|4546446_4547052_+	ribonuclease HII	E3T5H8	Cafeteria_roenbergensis_virus	1.7e-24	40.0
WP_173118583.1\|4547599_4549153_-	CHASE3 domain-containing protein	W8CYF6	Bacillus_phage	9.6e-16	27.1
WP_173117962.1\|4549174_4549546_-	CZB domain-containing protein	NA	NA	NA	NA
WP_173117964.1\|4549655_4550768_+	glycine cleavage system aminomethyltransferase GcvT	NA	NA	NA	NA
WP_173118585.1\|4550920_4551643_+	2-phosphosulfolactate phosphatase	NA	NA	NA	NA
WP_173117966.1\|4551647_4552562_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_173117968.1\|4552641_4553637_-	aldo/keto reductase	NA	NA	NA	NA
WP_173117970.1\|4553770_4554820_-	aldo/keto reductase	NA	NA	NA	NA
WP_173117972.1\|4554945_4555452_-	hypothetical protein	NA	NA	NA	NA
WP_173118587.1\|4555448_4556792_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_173117974.1\|4557007_4557445_-	hypothetical protein	NA	NA	NA	NA
WP_173117976.1\|4557708_4558620_+	LysR family transcriptional regulator	A0A2H4J8I9	uncultured_Caudovirales_phage	1.5e-05	36.0
WP_173117978.1\|4558704_4559721_+	putative sulfate exporter family transporter	NA	NA	NA	NA
WP_173117980.1\|4559744_4560119_-	hypothetical protein	NA	NA	NA	NA
WP_173117982.1\|4560352_4561933_+	amino acid permease	NA	NA	NA	NA
WP_173117984.1\|4562015_4562447_-	hypothetical protein	NA	NA	NA	NA
WP_173117986.1\|4562484_4562694_-	DUF2945 domain-containing protein	A0A1L2BWQ1	Bacteriophage	2.0e-09	50.0
WP_173117988.1\|4562861_4564880_+	RICIN domain-containing protein	NA	NA	NA	NA
WP_173117990.1\|4566401_4566677_-	hypothetical protein	NA	NA	NA	NA
WP_173117992.1\|4566782_4568435_-	FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_173117994.1\|4570039_4570255_-	DUF350 domain-containing protein	NA	NA	NA	NA
WP_173117996.1\|4570273_4570486_-	hypothetical protein	NA	NA	NA	NA
WP_173117998.1\|4570497_4571829_-	hypothetical protein	NA	NA	NA	NA
WP_173118589.1\|4571825_4572185_-	S-adenosylmethionine decarboxylase	NA	NA	NA	NA
WP_173118000.1\|4572369_4572789_+	hypothetical protein	NA	NA	NA	NA
WP_173118002.1\|4572889_4575328_-	M4 family metallopeptidase	NA	NA	NA	NA
WP_173118004.1\|4575654_4576776_-	AI-2E family transporter	NA	NA	NA	NA
WP_173118006.1\|4576918_4577461_+	glycine zipper 2TM domain-containing protein	NA	NA	NA	NA
WP_173118008.1\|4577558_4578035_+	nuclear transport factor 2 family protein	NA	NA	NA	NA
WP_173118010.1\|4578134_4578767_+	hypothetical protein	NA	NA	NA	NA
WP_173118012.1\|4578778_4578889_+	sensor histidine kinase	NA	NA	NA	NA
WP_173118013.1\|4578978_4579422_+	DUF2750 domain-containing protein	NA	NA	NA	NA
WP_173118015.1\|4579435_4581535_+	glycoside hydrolase family 97 protein	NA	NA	NA	NA
WP_173118591.1\|4581432_4581768_-	mannonate dehydratase	NA	NA	NA	NA
WP_173118017.1\|4581799_4583662_-	beta-glucuronidase	NA	NA	NA	NA
WP_173118019.1\|4583850_4585518_-	formate--tetrahydrofolate ligase	NA	NA	NA	NA
WP_173118021.1\|4585670_4586621_-	alpha/beta hydrolase	A0A0G3G493	Raccoon_poxvirus	3.3e-11	22.9
WP_173118023.1\|4586941_4587223_+\|transposase	transposase	NA	NA	NA	NA
WP_173118025.1\|4587219_4588086_+\|transposase	IS3 family transposase	U5P429	Shigella_phage	2.1e-20	35.1
WP_173118027.1\|4588174_4588516_-	hypothetical protein	NA	NA	NA	NA
WP_173118029.1\|4588580_4589993_+	DUF3375 family protein	NA	NA	NA	NA
WP_173118031.1\|4590005_4590629_+	DUF4194 domain-containing protein	NA	NA	NA	NA
WP_173118033.1\|4590659_4594148_+	AAA family ATPase	NA	NA	NA	NA
WP_173118035.1\|4594163_4595408_+	hypothetical protein	NA	NA	NA	NA
WP_173118037.1\|4596262_4596562_+	hypothetical protein	NA	NA	NA	NA
WP_173118039.1\|4596968_4597271_+\|transposase	transposase	NA	NA	NA	NA
WP_173118041.1\|4597267_4597771_+\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_173118043.1\|4597865_4598138_+\|transposase	transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP053911

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP053911_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053911_1

578-704

Orphan

Consensus_repeat	Method
ACTCCCCCACAGAAATGGGGTTACTCCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP053911_1

>merge|NZ_CP053911|1|578-704|CRISPRCasFinder
TTATCCCCACAGAAATGGGGTTACTCCCCCACAGAAATGGGGTTACTCCCCCACAGAAATGGGGTTACTCCCCACAGAAATGGGGTCTTAGGAGCCTGACTCCCCCACAGAAATGGGGTCACTCCCC

>NZ_CP053911|1|1|578-704|CRISPRCasFinder
TTATCCCCACAGAAATGGGGTTACTCCCC	CACAGAAATGGGGTTACTCCCCCACAGAAATGGGGTTACTCCCCACAGAAATGGGGTCTTAGGAGCCTG
ACTCCCCCACAGAAATGGGGTCACTCCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053911.1\|WP_173118976.1\|3730_4771_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP053911.1\|WP_173118980.1\|6270_6687_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053911.1\|WP_173118972.1\|2012_2330_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053911.1\|WP_173118982.1\|6959_7643_-\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_CP053911.1\|WP_173118988.1\|12900_13800_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP053911.1\|WP_173118978.1\|5424_5730_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053911.1\|WP_173118986.1\|11302_12850_+\|IS1182-family-transposase	unknown	unknown	gnl\|CDD\|377531
NZ_CP053911.1\|WP_173118974.1\|2326_3088_-\|ParA-family-protein	unknown	unknown	gnl\|CDD\|224113
NZ_CP053911.1\|WP_173118970.1\|777_1941_+\|replication-initiation-protein	unknown	unknown	gnl\|CDD\|376444
NZ_CP053911.1\|WP_173118984.1\|8524_11137_+\|gliding-motility-associated-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|372639

Protein	Function_ID	Function_description	E-value
NZ_CP053911.1\|WP_173118976.1\|3730_4771_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	3.54763e-13
NZ_CP053911.1\|WP_173118982.1\|6959_7643_-\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	0.00282097
NZ_CP053911.1\|WP_173118988.1\|12900_13800_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	3.9365e-46
NZ_CP053911.1\|WP_173118986.1\|11302_12850_+\|IS1182-family-transposase	gnl\|CDD\|377531	pfam05598, DUF772, Transposase domain (DUF772). This presumed domain is found at the N-terminus of many proteins found in transposons.	3.40788e-17
NZ_CP053911.1\|WP_173118974.1\|2326_3088_-\|ParA-family-protein	gnl\|CDD\|224113	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning].	3.01813e-57
NZ_CP053911.1\|WP_173118970.1\|777_1941_+\|replication-initiation-protein	gnl\|CDD\|376444	pfam01051, Rep_3, Initiator Replication protein. This protein is an initiator of plasmid replication. RepB possesses nicking-closing (topoisomerase I) like activity. It is also able to perform a strand transfer reaction on ssDNA that contains its target. This family also includes RepA which is an E.coli protein involved in plasmid replication. The RepA protein binds to DNA repeats that flank the repA gene.	2.88814e-48
NZ_CP053911.1\|WP_173118984.1\|8524_11137_+\|gliding-motility-associated-C-terminal-domain-containing-protein	gnl\|CDD\|372639	pfam13585, CHU_C, C-terminal domain of CHU protein family. The function of this C-terminal domain is not known; there are several conserved tryptophan and asparagine residues.	2.29584e-19

>NZ_CP053911.1|WP_173118970.1|777_1941_+|replication-initiation-protein
MTKDLITTTNPLVVQHNAMVNAGFTMSALEMRCFLAMISRIGRDDTALPVCRIPVRELCADSNSKNVYTEVRAMTEKMASRFLLLEVLGPNGERMKEPDIKNRPLMGAIDYLKREGVVEAVFNEHLKPYLLELKNNFTKAQLSQVLKIKRPASHRIYWLLREYAAFGKRTISVSELRHVLGLKDEYVDRFDHFRARVLDPAQEELAQTDLPFTYELIKQGRVITEIRFLFAPTSAALPELLPPSEAWATALLAAGVADKSLEAVREKLEAGTYDEGYIHFVLQAVRTQADAGKVKKPAGAIFKALMDGYLLPAYQKTQLTSAKPKTRTNQALSSQRKKLQSELEDARNSLSFFQTSLLYTDDTRPSFVAQVKSKIAELEQQLRQLEA
>NZ_CP053911.1|WP_173118972.1|2012_2330_-|hypothetical-protein
MSTKPTFGKKVLSSINERIEPVQAESPESLPSDREEQTVWVSFTTAVTRETYLKLKQAEYWVPGFLMKELTEAALVKELAAYPEADKPLPDALLQKLLRTSKKLR
>NZ_CP053911.1|WP_173118974.1|2326_3088_-|ParA-family-protein
MRTIVMANHKGGTGKTTSCLNIAQTLREQGHSVLLIDCDSQCNLTQSFTLPTPLGKRLDAVLLGQASLSDTVQEVGEGLYLVPSSPDLAEAEERIGKKPGAEFALKELLDEVEAIDFCLIDTPGGLGKLTYAALTAATAVFIPAQPEYYGIEGLVGLLDVCQQVQKRLNKDLKIGGLFFTQYNRNDRRRAQKDMVALLEAHPVFGPLVMNTTIRPNVALVEAQIEKESIFTWANQSAGAQDYTALTAEILTRL
>NZ_CP053911.1|WP_173118976.1|3730_4771_+|alpha/beta-hydrolase
MRILKKAGRIVLLLVLLAVGIGVLYEQVERLRARRTYPLTGRLLPVGDHRLHYLATAPRGPVVVFESGLDLGGLLPWERVVAQVAPFVTAFAYDRAGIQRSERGTRPTTGAAMARDLHELLHRAGYPPPYLLVGHSLGGILLRSFVAQYPAEVCGVVLVEASHPDQLRRLPAALPADDAPPRWVVRLAAAAGVVRFLNTSQYAGTRPNDRINLVNRAFLPESVDAVLEEQAQIPALLDEARPVMSFGDIPLRVVTGTSPTRDQEDEPDAARRRQINRAWGAMQQDQLRLSTRSAQLLAPQSGHYVQLEQPDIVTAAIKQVLAQSAVPSYVPKRSAQARNNQVVTAR
>NZ_CP053911.1|WP_173118978.1|5424_5730_+|hypothetical-protein
MLCFDYEEPNHTHVFGSDTLAVLPDGTHVRWDGTTFAVRAKQRLPNHTLRLVLEGPGRDDNRPVIVRKTLVVNAQALSIRKQVQLAADTAWLQRNSYHFTR
>NZ_CP053911.1|WP_173118980.1|6270_6687_+|hypothetical-protein
MKPRPATAHSRASQRLFRWGLVGVLVAFTAFEELHLRPQLRRHHLTRFGQVLADSLPNFIAPLLLVALYITLFQKQTRPEITRACGSAVAGLVLYEFAQRWMANRVFDVQDIVATLLGGLVAWVVLTGRVPHVDGAQQ
>NZ_CP053911.1|WP_173118982.1|6959_7643_-|CPBP-family-intramembrane-metalloprotease
MPPWTVWAYWLGLRPVGWLREVVWQTPVNWVGKGLGVLCSLAWVYILRRTTPRPAGFVRPTAGSLRAVVPVVLVVAAALLADAYWTRYEFLPLTAGQQLFYLTLPGLDEELFYRGALLGLLAPGLPRSLPLPGTRTSWGGVVGVLLFTLGHGLGFPARLFELGVGTDFWFYVREWWSPAHFPLRVVLFQLAMGTFFLWVRERTGSAWAAAGVHCFMNGCLALGHAAG
>NZ_CP053911.1|WP_173118984.1|8524_11137_+|gliding-motility-associated-C-terminal-domain-containing-protein
MDAAGNRYVTGIFQGNIQFGATTLSTNSLYSDVFVAKIDPAGNYLWALRAGDPSSNEIGTAIALDASGNVYVTGIFRGSSITFGTTTLPNTSLYSNAGDVFVVKLTSSGQYLWAVGAKGESEERSGGIALDSQGNVFVAGSFESPQLLLGSFTLQNATATTVVNRGDAFIAKLDAAGKWLWAVRSGGDNTDGAASIAVDASGNAYSTGFIRSRSADFGSITLTHPDGVAAYVTKISPTGVYLWAVSAGGTGIYEDSGADIALDGNGGVFVTGTFQNYQAFFGPTSLTNRGNTPLTNTGTSDVFVARLDEAGKWRWAVSAGGVGREGGSSIVADKQGGVYLTGYYDQAAVQFGSTMLPYQGLYDDCFVAKLETAAGQWHWAVRAGGELNDVGQCVVLDAQQQVHVAGYYQSATLALPPFSLPGSRLASGLGFLTKLAPEPRVQITGDSLLCGASTQLVATAPAPVTAYRWSTGATTPAITVTQPGTYTVTITFASGLTSTAQFRVSSFVPTAQISGDSLLCPGASTVLTAVVPKPGAIYQWSTGATTPTISVTQPGTYSVTVRYGTTCTATAQYAVRVPTLRLLGDTQLCGLGSSVVLTALAPGATGLRWNTGATTASLPVTQAGTYSVVATFASGCSLTTSQVISRSALTLRGDTVLCAGNSATLTAMLTTPATYLWSTGATTPTIAVTQPGMYTVTARSTLPPFCTSTGQLRVKQAVPLPAFSLGADTTVCDYQALQLRAPSLTTPVATYRWSDGSTGASLRVTQPGLYTLQVSTPCETRSASRRISYRSCLLIPNIITPNGDHANDVFVVQGLAPGAWELVLYDRWGRQVFETTAYQHDWGTTAPAGLYYYLLRQADTTYKGWLEVVK
>NZ_CP053911.1|WP_173118986.1|11302_12850_+|IS1182-family-transposase
MQGHKQFVDKVVLRFRLSERVPKQNLYRRLAELLNWDFLYQQTRALYSHTGQPSLDPVVFFKLVLVGRLENIASDRRLVEHCSLRLDILYFLGYEVDEDLPWHSTISRTRQLYPVTVFEHLFDQVFGQCVAAGLVAGDTQTVDSAPVKANASLDSLREKAPVAPLHVTQETAFPTELPSAKTALQLRRVAARQAKRQAAPGGLGAHHAKAQLLSNKTHYSPTDPEARISVKPGKARALNYLCSLAVDTATGVISHIQADLADSRDCLHLPALVPRLQARLRAQELTLRDFVADTGYSNGFNYAFLEQQGITPWIPVFGPYKPTVEGFIYEPAADAYRCRANKLLPFRSFRTTENETWVKQYRAAYKDCQQCPLKASCVPHSQFKQVVRSAFDAAYRRAWQRQRTRQGQHMRRVRQRTVEPVFGSLLQHYGLRRVNTKGRAAAHKTMLITAIAYNLKKLLKQQSTRMLSLALALRPAQHGLMQALFSRRLLTGYRFQGALESGRQIAWSSATATFV
>NZ_CP053911.1|WP_173118988.1|12900_13800_-|IS3-family-transposase
MSRYRFIEAQRGDYPVRLLCQLVQVPTSGYYAWQQLQQQVVAKPEPAWETALVKVFGVHKRCYGTRRLRVELRRKGYRVGRQRLRTAMRRRGLYALQPKAFTPRTTDSTHGLRCAPNRLLNHPKPTQANRVWVSDITYLPLANGDWAYLCAFQDMASKQVVGWHVMATMPEELITTALQRAFWAQPPTPGLLVHSDRGGQYCGNAYRKLLHDHQALRSQSRRGDCYDNAQAESLWSRLKTEVLEVRERPIFADLADARASVADYFDYYNHERLHSSIDYQTPYHTHQQLLQLSALNCPA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP053911_1	1.1\|607\|69\|NZ_CP053911\|CRISPRCasFinder	607-675	69	NZ_CP053911	Hymenobacter sp. BRD128 plasmid unnamed3, complete sequence	607-675	9	0.87
NZ_CP053911_1	1.1\|607\|69\|NZ_CP053911\|CRISPRCasFinder	607-675	69	NZ_CP053907	Hymenobacter sp. BRD67 plasmid unnamed3, complete sequence	15269-15337	11	0.841

1. spacer 1.1|607|69|NZ_CP053911|CRISPRCasFinder matches to NZ_CP053911 (Hymenobacter sp. BRD128 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.87

cacagaaatggggttactcccccacagaaatggggttactccccacagaaatggggtctt	CRISPR spacer
cacagaaatggggttactcccccacagaaatggggttactccccacagaaatggggtctt	Protospacer
************************************************************

2. spacer 1.1|607|69|NZ_CP053911|CRISPRCasFinder matches to NZ_CP053907 (Hymenobacter sp. BRD67 plasmid unnamed3, complete sequence) position: , mismatch: 11, identity: 0.841

cacagaaatggggttactcccccacagaaatggggttactccccacagaaatggggtctt	CRISPR spacer
cacagaaatggggttattcccccacagaaatggggttattccccacagaaatggggtctt	Protospacer
****************.*********************.*********************

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP053909

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP053909_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053909_1

119502-119592

Orphan

Consensus_repeat	Method
AAAAAACGAGGGCTACCCCCACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP053909_1

>merge|NZ_CP053909|1|119502-119592|CRISPRCasFinder
AAAAAACGAGGGCTACCCCCACTGGAAACCTTATTAAAACGAGCTTTCCCCCTGGTCTTGTACTGGCTATAAAACGAGGGCTACCCCCACT

>NZ_CP053909|1|1|119502-119592|CRISPRCasFinder
AAAAAACGAGGGCTACCCCCACT	GGAAACCTTATTAAAACGAGCTTTCCCCCTGGTCTTGTACTGGCT
ATAAAACGAGGGCTACCCCCACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053909.1\|WP_173118797.1\|118136_119000_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP053909.1\|WP_173118805.1\|122039_122480_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053909.1\|WP_173118803.1\|121326_121860_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053909.1\|WP_173118868.1\|104591_106034_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|350015
NZ_CP053909.1\|WP_173118807.1\|122670_122877_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053909.1\|WP_173118786.1\|107841_108021_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|222853
NZ_CP053909.1\|WP_173118827.1\|123314_123776_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053909.1\|WP_173118792.1\|116629_117748_+\|AhpC/TSA-family-protein	unknown	unknown	gnl\|CDD\|239264
NZ_CP053909.1\|WP_173118780.1\|102369_103662_-\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902
NZ_CP053909.1\|WP_173118790.1\|111125_112691_-\|vitamin-K-epoxide-reductase-family-protein	unknown	unknown	gnl\|CDD\|240604
NZ_CP053909.1\|WP_173118784.1\|106265_107321_-\|IS110-family-transposase	unknown	unknown	gnl\|CDD\|376773
NZ_CP053909.1\|WP_173118831.1\|125059_125716_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053909.1\|WP_173118833.1\|125916_126513_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053909.1\|WP_173118794.1\|117837_118002_+\|transposase	unknown	unknown	gnl\|CDD\|366690
NZ_CP053909.1\|WP_173118826.1\|122925_123255_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053909.1\|WP_173118829.1\|124568_125057_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053909.1\|WP_173118801.1\|121155_121323_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053909.1\|WP_173118782.1\|103716_104616_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|225183
NZ_CP053909.1\|WP_173118799.1\|119694_120831_+\|replication-initiation-protein	unknown	unknown	gnl\|CDD\|376444
NZ_CP053909.1\|WP_173118788.1\|109237_110791_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP053909.1\|WP_173118782.1\|103716_104616_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|225183	COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms].	1.03272e-87
NZ_CP053909.1\|WP_173118797.1\|118136_119000_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	6.52656e-57
NZ_CP053909.1\|WP_173118780.1\|102369_103662_-\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	7.26542e-24
NZ_CP053909.1\|WP_173118868.1\|104591_106034_-\|hypothetical-protein	gnl\|CDD\|350015	cd18571, ABC_6TM_peptidase_like, Six-transmembrane helical domain (6-TMD) of an uncharacterized peptidase ABC transporter and similar proteins. This group includes the 6-TMD of an uncharacterized peptidase-containing ABC transporter of T1SS (type 1 secretion systems), similar to heterocyst differentiation protein HetC. HetC is involved in early regulation of heterocyst differentiation in the filamentous cynobacterium Anabaena sp. T1SS are found in pathogenic Gram-negative bacteria (such as Escherichia coli, Vibrio cholerae or Bordetella pertussis) to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. ABC-transporter proteins in this group carry a proteolytic peptidase domain in their N-termini, termed as C39, which cleaves a double glycine (GG) motif-containing signal peptide from substrates before secretion.	3.2856e-139
NZ_CP053909.1\|WP_173118786.1\|107841_108021_-\|hypothetical-protein	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	0.000137282
NZ_CP053909.1\|WP_173118799.1\|119694_120831_+\|replication-initiation-protein	gnl\|CDD\|376444	pfam01051, Rep_3, Initiator Replication protein. This protein is an initiator of plasmid replication. RepB possesses nicking-closing (topoisomerase I) like activity. It is also able to perform a strand transfer reaction on ssDNA that contains its target. This family also includes RepA which is an E.coli protein involved in plasmid replication. The RepA protein binds to DNA repeats that flank the repA gene.	1.78043e-28
NZ_CP053909.1\|WP_173118792.1\|116629_117748_+\|AhpC/TSA-family-protein	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	7.52612e-30
NZ_CP053909.1\|WP_173118784.1\|106265_107321_-\|IS110-family-transposase	gnl\|CDD\|376773	pfam02371, Transposase_20, Transposase IS116/IS110/IS902 family. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS116, IS110 and IS902. This region is often found with pfam01548. The exact function of this region is uncertain. This family contains a HHH motif suggesting a DNA-binding function.	3.35834e-25
NZ_CP053909.1\|WP_173118794.1\|117837_118002_+\|transposase	gnl\|CDD\|366690	pfam01527, HTH_Tnp_1, Transposase. Transposase proteins are necessary for efficient DNA transposition. This family consists of various E. coli insertion elements and other bacterial transposases some of which are members of the IS3 family.	0.002198
NZ_CP053909.1\|WP_173118790.1\|111125_112691_-\|vitamin-K-epoxide-reductase-family-protein	gnl\|CDD\|240604	cd12921, VKOR_4, Vitamin K epoxide reductase (VKOR) family in bacteria. This family includes vitamin K epoxide reductase (VKOR) present only in bacteria. VKOR (also named VKORC1) is an integral membrane protein that catalyzes the reduction of vitamin K 2,3-epoxide and vitamin K to vitamin K hydroquinone, an essential co-factor subsequently used in the gamma-carboxylation of glutamic acid residues in blood coagulation enzymes. All homologs of VKOR contain an active site CXXC motif, which is switched between reduced and disulfide-bonded states during the reaction cycle. In some bacterial homologs, the VKOR domain is fused with domains of the thioredoxin family of oxidoreductases which may function as redox partners in initiating the reduction cascade. This family also has a cysteine peptidase domain present at the N-terminus of the VKOR domain.	1.09732e-15

>NZ_CP053909.1|WP_173118797.1|118136_119000_+|IS3-family-transposase
MSTYRYIAQRQGQVPVRQLCQVLRVSASAYYAWQHRQLPAPEPAWQAAVRAQFRWHVARYGTRRLRAELHAQGYPVGRWRIRRALAAAGLRAQQPRSFVPRTTDSDPTVRAAPNLLLGQPAPTAPNQVWVGDITYLPKQGGGWLYLATWLDRYSRKIVGWDVRESMPEALVSEALRRAMAVRQPAAGLIVHSDQGSQYAATNFKALVARHQALQSMSRRGNCYDNAHAESFWSRLKTELLDGGSFRSLSEARLEISHYLAYYNAERRHSSLGYLAPNHFEIHFQTTS
>NZ_CP053909.1|WP_173118794.1|117837_118002_+|transposase
MSVEKSKKTPDKRRKYDDAFKAEALRLASESRSTQAATQQLSISPKLLYRWQQA
>NZ_CP053909.1|WP_173118792.1|116629_117748_+|AhpC/TSA-family-protein
MKSLLCYVVVLLTTTSCSAQSGQYDLRIRLGARPRPSTAYLWRQSQGRLVVDSAHLSNGEYTFSGMAVTPFRARLVLGHKWSLPLGYDAFPFYLYLESGTIRVSSQDSLRHATLKGGPTNADYNALRPSLLPLAEQEQDAYQARNHATSKSERDHARQLYDAFQASQQQTLPPLIRQWAHSRVALDLLLDYAPALATYEDLAPLYNMLAPSIKYSSAGQALGQRIAELHETAVGRPAPPFTQPDSTGQTVALAAFRGQYVLLDFWASWCTPCRAEIPLLKATYQQYKARHFNVVSVSMDTNRYLWIQALKQESMPWKQVSDLTGLRGEPAKLYHIDGIPQNFLIGPTGTILAKNLQGDALTRKLAEVLATKP
>NZ_CP053909.1|WP_173118790.1|111125_112691_-|vitamin-K-epoxide-reductase-family-protein
MNKNSVRMEKVVIDYLKHIGAKANYPNIEDNIFNHPDYPSVLSISDVLSMHGCKVNVVKVDLKKAAAIQYPCLVHVYNDGGGVILVKSLPDFITKINNFERASGVLIKIESKISSNTFEYRKYIVEKGIRYALILSLCFLLFYSIFNLRSINLAPSLILPIIGTVIGFALVFKDLGIAAEELEKFCSTQHGDGCDKVTKSASGTIMNIIKLSDIVLAYFSFQITTVLMLGFNAFPTLKFISLFSLLAVPYSIYNQAKIGTWCNLCILTLAIIIAECAYFNYNYAGYGLNIWHFIYAVAALVSIMSATVIINNTIRELLTLKGELALSNRIKNSFFVFSSILKSTDKIDVTNDNESKFVIGNINSPIHITMIANLYCGPCEEKLLQLSQFVKKHLDDVCLELLFIKNNPDELEISANEYIFNYWLANIKGAYNELERTVSLLLDWYDIKNLDTFSTKYKENDLSTISQATNMYNKQLNVIKNIDYSQTPTLYVNGYNMPNKYSIFDLEKILPEILNEIKNFG
>NZ_CP053909.1|WP_173118788.1|109237_110791_-|hypothetical-protein
MKIIQSYWSKPSETSRLTNDRHSGGWLTSRYHYIGMSLSCLLLNRYHRSVELLTDELGYELLINKLNLPYTKVSKCMDNINSYSPSLWALPKLHAYNIQDEPFIHVDGDVFVWQALTEFLNGNQQLVVQSPEIHLVGYYKKLYLHMRKTYHNIPSELQWDENVTSSKLFFTSVNAGIFGGTDNAYIKQYASTAINFFNSNKQTIQSDPKADTLNVLIEQLLFSKLVEKNGKTLEYVLPNLDKKFSQMLQLHLVPLASKYVHLAGRTKRIMHNCEQVEMRLRYEFPKEYKSICKELEQIENENRSIFPYINSSLDKSKKRIKNSSSAKRFFLRNGITLNQLKNSSDISQGNVNRMHLFVKQLYDLESALESLNNKNNTYKSYKFKNAEVFYNMLTMLSIDDILKNRYTSSSISIIQKTNWPLKHMSKIIKNNNWHLNFTDTFIGITLNMLGANAQDLKGLDKLLVLFQNRIISGNQLVDYLFEKTGSTAENLNNIKLIALNFLANQVVLTGRLRVVKP
>NZ_CP053909.1|WP_173118786.1|107841_108021_-|hypothetical-protein
MASQHVLCWHVAATMLEELVSTDLRRAFWSQPPTPDLLVHSDLGGQYCGNDHRKLLRDR
>NZ_CP053909.1|WP_173118784.1|106265_107321_-|IS110-family-transposase
MPVPPAAPLKYVVGLDIAKDTFVACFGHIEVTQHLHFGKPATFANTSAGFAELLTWTVRQQAARAPLWFVVEATGVYYEELAYFLADKQQALSVLLPNKAKHFAQSTEQKSKTDLLDARLLCRLGLERVLPAWQPPTPALRQLRALSRERHSLTGQGARLKIRRHAYQHSYQPDARTLERLNMQQQLVDQQLKAVDKDLADLVKAAPDLARKLAHLTSVPGIGLTTAIALVAETTGFALVENERQLASYAGLDVVQRQSGLSAGATRISRRGNVRLRTALYLPAVSSLRYNPQQMVFYARLRSRHPTGKPGVIAVMRKLLLLCYSLWKNDQPYDPYYHPAHQPPKEVAPAV
>NZ_CP053909.1|WP_173118868.1|104591_106034_-|hypothetical-protein
MMRFPLYIQHDQMDCGPTCLRMVAKHYGRHFSAQTMREKAQIGKEGVSLLGIAEGAEAIGLRALGIKVSFEQLAEEAQLPCIVHWQQNHFVVVYDIKLRSKWKSKLTTLFGSKPSVEEFDATHQATSYGAIANTNGFPVEARGTVFVADPNRGLTSYTVKEFRQGWLNSYADNERVGMAMLLEPSPAFYEQDEEADTNYSLGRVLNYVGQYKQLLAQLILGLSVGSALQLLVPFLTQSVVDIGINTQNLPFIYLVLGAQLMVMAGRLTVEFIQSWILLHVSTRVNLSILSDFLIKLMRLPLSFFDTKHYGDIMQRIGDHQRIESFVTGQAVALPFALANILVLSVVVALYSLPIFGIYVISNVLYVGWIMLFLRHRRKLDTKRFTLSARSQSALVQIIQGMQDLKLAGAERQSRWSWERLQANLFRWQMSSLTLGQYQQVGAFLINDGKNILITCLAAQAVIQGQMTLGQCWLCNKLLDS
>NZ_CP053909.1|WP_173118782.1|103716_104616_-|ABC-transporter-ATP-binding-protein
MQQIIGQLNGPVSQLTGLSQSMQDAKISLERLNEVHALADEEPIGQPKMDEVINAGLYLSRLAFQYPGAGNELVLRNVNLHIPAGKTTAIVGMSGSGKTTLLKLLLNIYQPSSGEIRLGNVALRHMKNASWRAQCGVVMQEGYIFSDTIARNIAVGVERIDTKKLTDAIRIANLSDFVDILPSGLHTKIGPEGIGISQGQKQRILIARAVYKDPQFILFDEATNALDSINEATIMNNLGDFFRGRTVIIVAHRLSTVCQADQIMVLDKGETIEVGTHSELVKQQGSYWKLVKNQLEIDI
>NZ_CP053909.1|WP_173118780.1|102369_103662_-|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MHQSSDFIELRAEEVQEILARPPKWLLRWGITGVFLLVVIIFIGTWMVRYPDLVHASFRLIATNAPKAVVTRTDGKVIHLFVQDGQQVQVGAPLAHLESNASYAEVLWLGEELQSAWHFAQNGELEKVQLASLASYHELGELQAAFQTFEQANIRLKSYLAGGFFSKKKALLQKELSDLQELSKQLRRERLLQFRDAKLAQQDYDVQRGLASQKGIASLELKREASKNIERQLAYEQMASTLINNTSAQRAKQKELLEIDREFSEKRSQFLQALNSLQSALVAWKAKYILIAPVSGRVFFTGLLQESQVVALNQELFYVAPESTGYLGELLVPQRNAGKVRVGQEVLVRFAGFPYQEFGFVKGRITTIADIPLKDSVFLAKVVLSEGLKTSYGKSLVYKTGMTASADIITADSRLLQKLFYQFRKATDGR
>NZ_CP053909.1|WP_173118799.1|119694_120831_+|replication-initiation-protein
MPPTRRPAPTLPLTLAYEPRHRELVKQHWNVTFARQGKMSVAAKRIMARVLDQIRDDDFHLREYYQLAIGDITESAGINRENAYREIEGSLRELAAAAWEFKSLETNEWYLLNLLDTTKDIRVGYAGGTITVLLNPQLAPYFLQLAHYTTYRLDSYLKLRSWYSMRLYEILAAFRDTGVWEVGLEEYRQLLDCWHQVDKRGRVVKDKEGQAKLKYPNVNDLISNTTTEPLTELADTELAFRVIPRHEAARAGRGRKRIVGLRFELLHPQPTTIPAHWLTHAVTGPIIEKLRSWKVSDKNIALYATTLERAGIQKLLQEWQLKQVSSRAIDSPEKYCNAAFVRAAKQLIEQQKAEALQVRQDLQLGLFGGASSEGAGSK
>NZ_CP053909.1|WP_173118801.1|121155_121323_-|hypothetical-protein
MLISHPTQRGTGILLEGAYYDMHALHLVIHAVAKPLEQPETDSQFTFLLGLAYEV
>NZ_CP053909.1|WP_173118803.1|121326_121860_-|hypothetical-protein
MQIITLGKPYPFPNPAPGQNGTRMHLTERFLTVVCSLNQPTSQEIALWRGGQLRYGIYEPGPGLLFLVSELGPGWLFEATLNLRQPGPEAAVAAALAWPQQSGDRLEYVLLDATTNVVHGWRSFAAAPAFNQAVRAAAARQLQAYPTAAQATAGLKQAEQTYSLRQLSQCTHFYSQL
>NZ_CP053909.1|WP_173118805.1|122039_122480_-|hypothetical-protein
MNPFQAIPGVVHANPFHIYDDEKRRPVKCDLVVQPGQAWAVATELANEGPGLVLCPLTLASAICTQYSIEPEKLVLLVRYDYAADYESIYSLHFVAGGRDLFDGVRFAGATRNVVSPVDVPGLMEALRTGTTGPWRALRPGSAARS
>NZ_CP053909.1|WP_173118807.1|122670_122877_-|hypothetical-protein
MRTPPAAPSLPGRLLLAGLLWLVSLLLLGLVNVAGAARYDALPQWLALLELSWALLQGLSLLRLLYCL
>NZ_CP053909.1|WP_173118826.1|122925_123255_-|hypothetical-protein
MPTPPLSRNKEPRAAYDYDLTADYILVVTDLGAPRSVTNDIQHVLADIAQAEELPSLAGYRAVYQDSQGEWAGITLTAQGDFTGFYGLGRRVTELYEALARVRDLHPRL
>NZ_CP053909.1|WP_173118827.1|123314_123776_-|hypothetical-protein
MNTTLLNPLTTITLAQAQRQATAQRLSYRAAQRARLVAFQEFRESYCDLFDAADWLHYQETTGLHLATLLRFARYQCVEQPRQTRLFVRPPQSEWFEPYHMRRGYVEADYAATVATPRLLDYLRQRNPDFTIVAAPDWQSANAGAAPAWQQAA
>NZ_CP053909.1|WP_173118829.1|124568_125057_-|hypothetical-protein
MGGIFIRNNHYRPQPLVLADYLSLRTSGVTAATGLTGKARQGRSCTSSRLLYCRLLWRWGAWLGESTKHLSQQEERFEDLCDLLGWQVSKVSAVRLHALLTKVCALASIPFTAQVKQSKQRLAVSRAADGSLPASFVVLLTKKVAGQPAPAAPRSQQLAMSL
>NZ_CP053909.1|WP_173118831.1|125059_125716_-|hypothetical-protein
MANIQPIYLDTNFCRDPQVLRKCFGPNVGLLLDLLVFAAARTHVAEGNRRPELLPPAGQGRWIRFHTSDFYREFGYNRQTLLAKPTPRLVAHVFAGERKADQPAYGSTVLETTLFSMSSNVLRFTKRYYQQFGPDRKVQQTLTALQIFQDLQITRATRPGLANLAADDVDGPPLGLDERPEENVPGAADLFTDLPAPAPAGGGSWPPGRPSVSILVIT
>NZ_CP053909.1|WP_173118833.1|125916_126513_-|hypothetical-protein
MCVDFSVLPQAQRRAMEHLLRIENKFLNYNRSDGVPAHDARTLLMALTREAWCDPTGLGRAWTPAARTILPDGPNRLLRALPPPYFEARELRALHLAYKGHADAVVSLVVDVDERVLLLLALERAEQLEQASQRGAYHLPTLLNKLVGLTLPEADTLWTALQTACSARLLNPEPGSPELLDTPLSLCEAKPVPVPVRR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP053909_1	1.1\|119525\|45\|NZ_CP053909\|CRISPRCasFinder	119525-119569	45	NZ_CP053909	Hymenobacter sp. BRD128 plasmid unnamed1, complete sequence	119525-119569	0	1.0

1. spacer 1.1|119525|45|NZ_CP053909|CRISPRCasFinder matches to NZ_CP053909 (Hymenobacter sp. BRD128 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

ggaaaccttattaaaacgagctttccccctggtcttgtactggct	CRISPR spacer
ggaaaccttattaaaacgagctttccccctggtcttgtactggct	Protospacer
*********************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

30634 : 64678

Bacillus_phage(100.0%)

integrase,transposase

attL 19911:19925|attR 69975:69989

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
19911:19925	attL	NA	NA	NA	NA
WP_173118655.1\|30634_31006_+\|transposase	transposase	NA	NA	NA	NA
WP_173118657.1\|31025_31595_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_173118659.1\|31600_31984_-	hypothetical protein	NA	NA	NA	NA
WP_173118661.1\|32249_32651_+	recombinase family protein	NA	NA	NA	NA
WP_173118663.1\|32660_33566_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA
WP_173118665.1\|33562_34441_-	hypothetical protein	NA	NA	NA	NA
WP_173118667.1\|34670_36710_+	hypothetical protein	NA	NA	NA	NA
WP_173118669.1\|37135_37612_+	hypothetical protein	NA	NA	NA	NA
WP_173118864.1\|37754_38657_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_173118671.1\|38911_39757_-	hypothetical protein	NA	NA	NA	NA
WP_173118673.1\|40292_41612_+	S8 family serine peptidase	A0A127AWU5	Bacillus_phage	2.1e-24	34.1
WP_173118675.1\|41659_41902_+	hypothetical protein	NA	NA	NA	NA
WP_173118677.1\|41941_42970_+	S1/P1 nuclease	NA	NA	NA	NA
WP_173118679.1\|42992_43292_-	hypothetical protein	NA	NA	NA	NA
WP_173118681.1\|43408_43816_-\|transposase	transposase	NA	NA	NA	NA
WP_173118683.1\|43828_45010_-	VCBS repeat-containing protein	NA	NA	NA	NA
WP_173118685.1\|45061_49477_-	hypothetical protein	NA	NA	NA	NA
WP_173118687.1\|49431_50661_-	hypothetical protein	NA	NA	NA	NA
WP_173118689.1\|50699_51242_-	hypothetical protein	NA	NA	NA	NA
WP_173118691.1\|51336_51837_-	OmpH family outer membrane protein	NA	NA	NA	NA
WP_173118693.1\|51847_52393_-	hypothetical protein	NA	NA	NA	NA
WP_173118695.1\|52529_56102_-	hypothetical protein	NA	NA	NA	NA
WP_173118697.1\|56128_57757_-	hypothetical protein	NA	NA	NA	NA
WP_173118699.1\|58499_58763_+\|transposase	transposase	NA	NA	NA	NA
WP_173118701.1\|58894_59134_-	hypothetical protein	NA	NA	NA	NA
WP_173118703.1\|59503_59959_+	hypothetical protein	NA	NA	NA	NA
WP_173118705.1\|59969_60398_+	hypothetical protein	NA	NA	NA	NA
WP_173118707.1\|60434_60842_+	hypothetical protein	NA	NA	NA	NA
WP_173118709.1\|60865_61345_+	hypothetical protein	NA	NA	NA	NA
WP_173118711.1\|62155_63688_+	hypothetical protein	NA	NA	NA	NA
WP_173118713.1\|63709_64678_+\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
69975:69989	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP053908

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP053911

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP053909

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection