CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP041345	Bacteroidales bacterium 38-H chromosome, complete genome	3 crisprs	csa3,WYL,RT,cas9,cas1,cas2,DEDDh,cas3HD,cas3	0	8	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP041345_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041345_1

768565-768667

Orphan

Consensus_repeat	Method
TCAGAGAGTAACGTCCACTAAAACAAGGATT	CRISPRCasFinder

1 spacers

WYL

The CRISPR arrays of NZ_CP041345_1

>merge|NZ_CP041345|1|768565-768667|CRISPRCasFinder
TCAGAGAGTAACGTCCACTAAAACAAGGATTACGACTAGTCTTCCGTAGCATGGACATTGGCCCCCGCTTCGTCAGAGAGTAACGTCCACTAAAACAAGGATT

>NZ_CP041345|1|1|768565-768667|CRISPRCasFinder
TCAGAGAGTAACGTCCACTAAAACAAGGATT	ACGACTAGTCTTCCGTAGCATGGACATTGGCCCCCGCTTCG
TCAGAGAGTAACGTCCACTAAAACAAGGATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041345.1\|WP_173072913.1\|757262_758375_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133035
NZ_CP041345.1\|WP_173072930.1\|772016_772604_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041345.1\|WP_173072928.1\|771684_772014_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041345.1\|WP_173072933.1\|772739_773696_+\|DUF4407-domain-containing-protein	unknown	unknown	gnl\|CDD\|379583
NZ_CP041345.1\|WP_173072924.1\|770714_771191_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041345.1\|WP_173072917.1\|761515_764932_-\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|223911
NZ_CP041345.1\|WP_173072918.1\|764960_766097_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP041345.1\|WP_173072939.1\|777581_779282_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|381085
NZ_CP041345.1\|WP_173072911.1\|756143_757256_+\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|99734
NZ_CP041345.1\|WP_173072908.1\|754076_754868_-\|UDP-2,3-diacylglucosamine-diphosphatase	unknown	unknown	gnl\|CDD\|277343
NZ_CP041345.1\|WP_173072926.1\|771271_771682_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041345.1\|WP_173072920.1\|767562_768216_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP041345.1\|WP_173072915.1\|759631_761356_-\|lysine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234778
NZ_CP041345.1\|WP_173072922.1\|770190_770655_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041345.1\|WP_173072935.1\|773876_775388_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|236644
NZ_CP041345.1\|WP_173072909.1\|754874_756029_-\|AhpC/TSA-family-protein	unknown	unknown	gnl\|CDD\|239264
NZ_CP041345.1\|WP_173072919.1\|766225_767536_-\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NZ_CP041345.1\|WP_173072937.1\|775377_777585_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|350691
NZ_CP041345.1\|WP_173072921.1\|769068_770097_-\|WYL-domain-containing-protein	WYL	pfam13280_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
NZ_CP041345.1\|WP_173076736.1\|758401_759580_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094

Protein	Function_ID	Function_description	E-value
NZ_CP041345.1\|WP_173072913.1\|757262_758375_+\|glycosyltransferase	gnl\|CDD\|133035	cd04192, GT_2_like_e, Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.	6.93321e-41
NZ_CP041345.1\|WP_173072933.1\|772739_773696_+\|DUF4407-domain-containing-protein	gnl\|CDD\|379583	pfam14362, DUF4407, Domain of unknown function (DUF4407). This family of proteins is found in bacteria. Proteins in this family are typically between 366 and 597 amino acids in length. There is a single completely conserved residue R that may be functionally important.	2.03363e-31
NZ_CP041345.1\|WP_173072917.1\|761515_764932_-\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
NZ_CP041345.1\|WP_173072918.1\|764960_766097_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	7.93391e-53
NZ_CP041345.1\|WP_173072911.1\|756143_757256_+\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|99734	cd00609, AAT_like, Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein.	8.5573e-72
NZ_CP041345.1\|WP_173072908.1\|754076_754868_-\|UDP-2,3-diacylglucosamine-diphosphatase	gnl\|CDD\|277343	cd07398, MPP_YbbF-LpxH, Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain. YbbF/LpxH is an Escherichia coli UDP-2,3-diacylglucosamine hydrolase thought to catalyze the fourth step of lipid A biosynthesis, in which a precursor UDP-2,3-diacylglucosamine is hydrolyzed to yield 2,3-diacylglucosamine 1-phosphate and UMP. YbbF belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	8.66268e-54
NZ_CP041345.1\|WP_173072920.1\|767562_768216_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	3.01618e-07
NZ_CP041345.1\|WP_173072915.1\|759631_761356_-\|lysine--tRNA-ligase	gnl\|CDD\|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0
NZ_CP041345.1\|WP_173072935.1\|773876_775388_-\|hypothetical-protein	gnl\|CDD\|236644	PRK10049, pgaA, outer membrane protein PgaA; Provisional.	0.0044874
NZ_CP041345.1\|WP_173072939.1\|777581_779282_-\|response-regulator-transcription-factor	gnl\|CDD\|381085	cd00156, REC, phosphoacceptor receiver (REC) domain of response regulators (RRs) and pseudo response regulators (PRRs). Two-component systems (TCSs) involving a sensor and a response regulator are used by bacteria to adapt to changing environments. Processes regulated by two-component systems in bacteria include sporulation, pathogenicity, virulence, chemotaxis, and membrane transport. Response regulators (RRs) share the common phosphoacceptor REC domain and different effector/output domains such as DNA, RNA, ligand-binding, protein-binding, or enzymatic domains. Response regulators regulate transcription, post-transcription or post-translation, or have functions such as methylesterases, adenylate or diguanylate cyclase, c-di-GMP-specific phosphodiesterases, histidine kinases, serine/threonine protein kinases, and protein phosphatases, depending on their output domains. The function of some output domains are still unknown. TCSs are found in all three domains of life - bacteria, archaea, and eukaryotes, however, the presence and abundance of particular RRs vary between the lineages. Archaea encode very few RRs with DNA-binding output domains; most are stand-alone REC domains. Among eukaryotes, TCSs are found primarily in protozoa, fungi, algae, and green plants. REC domains function as phosphorylation-mediated switches within RRs, but some also transfer phosphoryl groups in multistep phosphorelays.	1.65853e-06
NZ_CP041345.1\|WP_173072909.1\|754874_756029_-\|AhpC/TSA-family-protein	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	1.63538e-17
NZ_CP041345.1\|WP_173072919.1\|766225_767536_-\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	5.18327e-42
NZ_CP041345.1\|WP_173072937.1\|775377_777585_-\|AAA-family-ATPase	gnl\|CDD\|350691	cd17933, DEXSc_RecD-like, DEXS-box helicase domain of RecD and similar proteins. RecD is a member of the RecBCD (EC 3.1.11.5, Exonuclease V) complex. It is the alpha chain of the complex and functions as a 3'-5' helicase. The RecBCD enzyme is both a helicase that unwinds, or separates the strands of DNA, and a nuclease that makes single-stranded nicks in DNA. RecD is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	2.92849e-38
NZ_CP041345.1\|WP_173072921.1\|769068_770097_-\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	4.11006e-29
NZ_CP041345.1\|WP_173076736.1\|758401_759580_+\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.51185e-95

>NZ_CP041345.1|WP_173072920.1|767562_768216_-|TetR/AcrR-family-transcriptional-regulator
MNQEFDHIVAKVREMYAKYGIKSVTMDDVSRNLGISKKTLYRYVTDKNELVDKVIDYEIEQLNKGMNCVEKDRFNAIEELLIVSKILNHKMKAINLSTIYDLRKYYPLLYERLTKARREKMISSVISNIEKGQKEGFYRTDLNPSIIARLQISRIESFIDNDIFTLDEMSSENFFKEVFIYHIRGIANQKGIEFLEHKMRDFDINELFDAEFLTQSI
>NZ_CP041345.1|WP_173072919.1|766225_767536_-|TolC-family-protein
MRTLQRLTYLLFSVGFTLGAAGQENSYTFTLNEAKAFALSNNLTRKNAAIDVTIAKKKVWETTAQGLPQVSAGVDFQYILNDLPKLTLPGSDGQPTQIEVGEKANATYSVTISQLVFNGPYIVGLQAAKAYKNLSENALVKTDQDIKANVTAGYLTVLLLQETSQIMDSSVANLKRIAHDTEQLYRTGFADKTAVDQVRVSVSLLENSSAETKRQLSSSVKLLKLQLGLPDSANLILSDKLTEMIARYNPNANDIAFDPSKNIDLKILDNQVNISKLQLKLNKSNFLPSVSAFVSFQRLHKEPLINFTPTALLGAKLTLPIFSSGMRLSKVQQAKLEVSKSINTYYQTLQNVEMGFADAKASLSVAWSKYETQKMNKELAKQVLDDVRTKYKNGLASQVDVIQANDKYLQAVGNYLAAIVEVINARVKLDKLSGNI
>NZ_CP041345.1|WP_173072918.1|764960_766097_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MKRIVPIFIAASLFAGCGNQDSPEALKAKLSKLKEQSTNINHQIKLIESRLAEIDTLNNGSNRISVIAERVKSEPFNHYFIASGKVELENQAAISTETNGQVKKIYVRKGERVKKGDILIALNTSIIENSISEVKIGLELATKVYEKQKALWEQNIGTELQYLQAKNQKESLEQKLKTLNAQLDMSIVKAPFDGIVDDIYIKEGELASPGKPVAYLLNPDKIKIEADISESFLSKVHVGDKIAVTFPTFPDIKIETEISRIGNYIDPKTRTITIQVNSNNPSGMIKPNQIALLYINDYYNPKAITVPSIILKQDTKGTFLFTVDKASNREVAKKVYVKTGISFNDRTEVVKGLKDGDMVIVAGYNMVSNSIPVNVSIR
>NZ_CP041345.1|WP_173072917.1|761515_764932_-|efflux-RND-transporter-permease-subunit
MDNKNIIRNFGPTTWALKNRNTIFLLSFIIALFGIVAYKGLPKELFPEVYYPTIMVQTFYPGNPPVDIENLITRPLEKELEDVKGLKKLSSTSLQDASMILVEFNTDVSIPDALQETKDAVDRAKSELPNDLLTDPVVNDIDFSEFPIININLSGDYSIQELKRFAEYLEDEIEAIPEVSKVNIQGVEDREIVIEVDMIKLESLGLSFTDIENAVRFENVSMSGGDIKIGKTRRSIRIIGEFASIKEIEAISVKRDKDKTIYLRDVAKVKDTFKEPTTIARLNGKPVVSVQVVKKSGENLLNATDQIFAILEHAQKSKVLPAQLELTITNDQSDLIRKQLSNLENSMILGVILVVLVLFYFLGTRNALFVGLSIPLSMLLSFVVINLIGYRINMIVLFSLILALGMLVDNAIVVVENIYRFVDNGHKPFEAARLAVGEIAGPVIASTITTLAAFLPLAFWQGLTGEFMKNLPVTLIIVLTSSLAVALVIIPVITATFIKHGDEMHDNIPDKRKAYRASSIIGAFAVVFYLTKVFILANILAILAIIIFLNAIFFYKVERWFRYRFLTWLERAYTKVLTFSLVGKRPFWITLGTFFLLIFTIIFFAIRSPEIKFFPSSDPNYINVIAELPIGSDLAATDSVMMMIENDINRVLAPNKEIVKSVLTTVGKGDPEKWALAGSQFNKGLTTITFVDYKDRGGVNTSKIMRQLNEELLNKYPGVKISIAQNQMGPPAGKAINIEVSGQDFETLISSADSIISYINSNNIDGIEGLKLDIELGKPELIVKIDRDKARRFGLSTMQIASTIRTAIYGKEISKFKDGEDDYSIQLRYADKYRYSLADIMNQKIGFMENGQLVQIPLSAVADFEYSNTYGSVMRKDKKRVVTIYSNVVKGYNATSINNQLKLLLSDFNLPEGYSISFTGEQEEQQKSMEFLSRAMLIALSLILLILVTQFNSLIRPLIIMTSVLFSTIGVFGGIATFKMDFVVVMTGIGLVSLAGIVVNNAIVLIDYIGLLKERRRVELGLAENDFLPMKYATDCIITAGKTRLRPVLLTAITTILGLIPMAIGMNFDFYGALSRFKPDLYFGGDNVIFWGPISWTVIFGLTFSTFLTLIIVPVMYRVTVTLQKKFAEWTGQAKRIH
>NZ_CP041345.1|WP_173072915.1|759631_761356_-|lysine--tRNA-ligase
MALYEELSEQEIIRRQSLEEMRKLGVDPYPAAMYPVSHSTADILGDFENMCEKQADVCVAGRIMSRRIMGNASFFELQDEKGKIQIYVKRDDICPGEDKTLYNKVFKKLLDIGDIVGIKGFVFRTKMGEESIHAKELTVLAKSLRPLPIVKEKDGKVFDAVTDPEFRYRQRYVDLIINPGVRETFRKRATIINTMREFFNSKGYLEVETPILQPIPGGAAARPFVTHHNALDIPLYLRIANELYLKRLIVGGFNGVYEFAKDFRNEGMDRTHNPEFTVMEIYVAYKDYFWMMDFTEEMLERVALALHGTTKVTFGDKEIDFKRPFRRMTMTDAIKEYAGVDITGKTEEELREICKQLEIETDETMGKGKLIDAIFGEKCEEHLVQPTFIMDYPIEMSPLCKRHRNNPELTERFELFVAGKELCNAYSELNDPIDQLERFQEQLRLSERGDDEAMYIDMDFVRALEYGMPTCSGMGIGIDRLTMFMTNQQSIQDVLLFPQMRPEKKPQKDSVEAYTQKGIPAEWVPVLQKMGFSTVASLKGAAAGKLFNDLCGYNKKNKLGLANPSMDDVKKWVE
>NZ_CP041345.1|WP_173076736.1|758401_759580_+|ABC-transporter-permease
MRIAIRRLLADRLAVASISFIAFVALVAILGYLITPDSTPFANNQHLQLATLKPGAKVKFLLVRKQHDVKQRNLIGRMLFGQESIYDEIPVDSIYIDGYKVYATEYNPIPESNAFVREFFLPEVLYGLDKDKKFLADGDTLIVFQNNGKETRVNLQDAKDELFRSRIIERRFWLGTDRFGRDLLSRLIIGARISLSVGFIAVAIALVIGILFGAIAGFSRGFVDDAIMWLVNVVWSVPTLLMVIALTMVIGKGFWQIFVAVGLTMWVDMARVVRGQVMSVREKEYVEAARVLGYSRWRTIFRHVLPNILAPVIIVSASNFSTAILLEAGLSFLGVGVQPPAPSWGTMIRDHYGYIIMGKAYLALIPGFAMMLLVLAFNLLGNSLRDALDPRE
>NZ_CP041345.1|WP_173072913.1|757262_758375_+|glycosyltransferase
MQIVSLILFLLYAIAILILLGGLLSSKWVRENNVYRTENRKVSVIVAFRNERGCLTELIKSLAGQDLQYNHWEAILVDDHSSDGSYELALSLAQGLPFSLYKLPKELKGKKSALLFGLSKAQHDIVAITDADCVLPSSWLREISFEMAHTDFFQGEVRPIVGAKSLISWFEALDYTSLMAVSAASFALHRPVIAASANLAFNRKLIPVDSESIRLDVHSGDDMFLLHAAKKQKIRRMRFLSSTNIAVQTYFDGGWSGFLNRRIRWASKAKSYTDIETIILASIVFAINAWLVMLLVLGALGFFDIMFPLKVWFWKSAIDFIFLFTYLIRTNQLKLLVVFLPLQVVYPFYITLAALTGLIKGITWKGRTSV
>NZ_CP041345.1|WP_173072911.1|756143_757256_+|pyridoxal-phosphate-dependent-aminotransferase
MRSKPEGSYISYFSNLVKSNGGINLAQGIPGFQPPKKLIDILNDVSSTEVHQYAPGIGNLKLRALVEQYYGVSPDQLLMVQGATEGLSLVYTYLLKILGSDFGVLSFNPAYESYSQLPKIFGQQFVEFYLDENNSIDFDELGKTVERNRVKLIFISSPGNPYGKIWSRDEIDNILNLAEKHGVYIVFDSVYEELYFEYKPYIPIDRLNERLFIVSSFSKSLCITGWRIGYIIHHSTHCKGLRAVHDYIGLCAPSVLQEALALYLSQNGYGCDFMESFRENVKLSFNELSKGLLELGFHVPKIDGGCFVWAELPPKFDDGFEFASELYEQKRVAVIPGEHFSKSSTKWIRFNVARPVDEIRLAVTCLKEFF
>NZ_CP041345.1|WP_173072909.1|754874_756029_-|AhpC/TSA-family-protein
MRFRFCISILLVALIAGCGSKDDVVVDVNINSPDKNVLYLNRIDFNQIFKVDSVKISKGENHKRFRIKQGDEPEFYSIGTKDGKAVTILASKGERIKLTLDLNNILSYQVEGSEGSSKVKEVVLAFAKSKAKVDVLSNRYLSSDSPEEREALNKEFDAERKRIKDELTKFIWDNPMSKASIMALYLKYNDNIYVFDSSDDLLLIKMVASAWKALYPKSNYTKGMLEDIKSIEKKITNAKFQQMIQNAEMPIPDLSISDRHGKKITLSSLKGKVVLLDFFTSENTVSLLDNRELMEIYKKYKSKGFEVYQISYDSTKEAWLNYLNSSNIPWISVREEDPKKSQAAIFYNVKQIPANYLIGKDFNIIGKNLYGKELQKALNEYLNH
>NZ_CP041345.1|WP_173072908.1|754076_754868_-|UDP-2,3-diacylglucosamine-diphosphatase
MSQDKKIYFASDLHLGLPNLEKSLPREKMFVSWLDEIYPSTSELYLLGDIFDFWFEYRRVVPKGYTRFLGKIAQFTDSGIPVHFFTGNHDVWMFDYFEKELGVTIHREPIVRELLGARFLLAHGDGLGPGDPGYKLLKRIFTSPTLQWLFAKLHPNFSLWFGNQWSVSSRYSKEITHNFRGEEEQITKFSRIKLSDEHFDFFIFGHWHSPIIYPLADNSNLTVLGDWLVSNTYGVWDGEQFNLMRYNPNGQDEVISSASLKGK
>NZ_CP041345.1|WP_173072921.1|769068_770097_-|WYL-domain-containing-protein
MPINKNALIRYQVLDRCFRNTGRKYYVEDLIEEINKVLQDIDPSKSVSKRQVLDDINFMESSEGFSADIERIQDGRRKFYRYSNPEFSINNIPIKQEEIEKIKAAIDVLARFEGMPQFDWVYEVVPLLQHKFGGLQSNGNPVVSFDFNRDLKGLEHFGVLFNAIINQQVLRIGYKRYFAEEPKYFHYHPYHLKEYNNRWFVLGFNQEEDNPYWNLALDRIISIEVTSLKYIQSETDWEEFFYDIVGVTRYADAEPVEIKLLFSKTRAPYVITKPLHPSQKHRFVGDKLEVRIKVIPNKELFALLLNFCPDIEVLEPEDVRAQFQNTLKESLCLAERNLGISG
>NZ_CP041345.1|WP_173072922.1|770190_770655_+|hypothetical-protein
MRKQLILMVLIMGAVGWESHAQILLNIDEIIEKYGHPFDKESINDSMYYMVYSYDQIYNKQTDIMRLKSDYVKLGIINNQTTEICIVVLQEYPSAYLYKAINVLNSYMYKPKKNDFIWVNRKKGTVKRILYEKGMQTFYVAELYYGNHVMDMLK
>NZ_CP041345.1|WP_173072924.1|770714_771191_+|hypothetical-protein
MRKITLIMLFLLSAKVGLSQLWLTEDELIKRYGKPIEKGYFEKIPDLDLYYLIFDSENVNKTSEYKCEYLKAFLPIDTSIVNYCFWVEAKYPIKYIYSFIENYNKKYSRPLKEDLKWIDYNEAVWHYLYITAEEDYFLAVDMVDFELLIREEKSDYDY
>NZ_CP041345.1|WP_173072926.1|771271_771682_+|hypothetical-protein
MNKILIALFVLTWALPGKTQLGYTLEEIIQKYGDNYSVGYNSDSLFYAIFENVKAGRSEKKTVMITLFNSDRKDAICIGKLIVYSLDEINEAVDKFNKKYVKKSELEWKDYENGILYIIDIDRNRGLFTITSLIDL
>NZ_CP041345.1|WP_173072928.1|771684_772014_+|hypothetical-protein
MGVYAVNLDEGTFTQDKDTYKNRLMDPQWKTRKEEILKRDGYRCVVCGSTENLEVHHRQYHYLIAAGRYRDPWDYDDHILITLCKECHSDGHTHYKVPVIFIDKTNKIV
>NZ_CP041345.1|WP_173072930.1|772016_772604_+|hypothetical-protein
MAIFNLFRRKISNEAANSSTAASATSPVATNQPPRVPKEIFIEENGPENRSLTFKSNGQKVGIDLIYDYLQVDFERKGYEDAITHPDESYKNDNINLLKMDLAILVQKVDSYYTERLKELDFHIESRKRSGLVDLVMELNSQKEVVLSHMERLNGIKNDIETGNGITKRVELSYQRGFSRGLSSITKSKFMNQKL
>NZ_CP041345.1|WP_173072933.1|772739_773696_+|DUF4407-domain-containing-protein
MRDLWLKTSCFFTGFNYQIVKNSSEAAAKMVKKNMSALIIISILWAFIGFNFTSRYLHGNTLTSLIVALVMVVVVIQIERQILLNVTNSKGAITFRTIIGVIMAFIGSIIIDQIIFKDDIEQGQMATVQQRVNRILPMKTTELKEQIAQIANAIESKEAERNQILVELGKNPTISTPTSVGKYEKDSTGKMVMVGREVTYQSVPNPKASLIPQIDDQLAQLRTDLAKKEELLLNIRSEIEKEMQSKTGFLDELTALYKIATSSFVSIFVWMLFFLFFASMELFILVNKISDNHTDYEDIIMHQMRVRMKQLEKLSETV
>NZ_CP041345.1|WP_173072935.1|773876_775388_-|hypothetical-protein
MSFREIKELRQAGKLDEALQMANQALEAEPENIWNKRAAAWVYYDYLKKNAQPDSYEVFKDNLIKLKNLQLPEDEKMVFDNCAWQIGSLVFALQKTEHVDYDKINELFEIIRDFHFSKPSEAYSFIYKAFHKGYQNWSKYLEFADWWDLNNLRSEDYLKEEYNRKKIMSIAEQAYIAYSKKLLEGEPLDPFGQERVIDKEKIQSFLPKLDSLIEKHPEYQYPPYFKAKLLLSLGSDENVLSAFLPFAKQKRNEFWVWELMAEIFSYDKNIKFACYCKALSLKTPEDFLVKLRQTFAELLIEKQMYNEAKTEIQKIIEAREKHEWKLPNQIAQWTEQEWYKSASAKNDNQDLYSIHIKKAEEILFQDVPEELVVVEFVNENKKILNFVKDKNKYGFFRYSDYISNPQIGDLLKVRFNGNGRDGYYNILSAKKVDADIPCDALKSFEGKLKINPSQNFGFIENIFVEPIIIKKNNLNDGQLLKGMAILSYNKKKKTLGWKAIKVI
>NZ_CP041345.1|WP_173072937.1|775377_777585_-|AAA-family-ATPase
MKIFNHFQHINLTNDQRNALEKLHAFLESDERIFILQGYAGSGKTTLLKGLVEYLKSLEKRYQLMAPTGRAARVIKQKTGFESTTIHKGIYSFEELQEIKQGENENDVSFLYQYKIRNNPEVHDSVLIIDEASMVSDILSQGEFFRFGSGHLLRDLISYSRIQECETNNKIIFIGDPSQLPPIGMNFSPALDPNYISETYKVSVSQAEMKEVKRQEVNNGILIAATKIRRCLTSGYFNDFDLRENKKDIFNPSYQEFLETYNVQQEPKIIICHKNKTALNLNRVIRKDKFGDDLPIQPSDTVVIGANNYYLGIMNGEFAIVSEVSPSVVSRDVSFYTKGGKTISVKLTWRKIGLILPDEKNQPKTINGFILENYLYGENTLTPDEQIALYVDFKKRHPNLKKGTEEFKEAIIKDEYFNCILLKYGYAVTCHKAQGGEWPNAFVFWDKGINNKFNFYESPHNRTGKTNPEFFRWAYTAVTRASKRLFCINPPYFSSFSEMSFVDTKIQQAYNDLTGQTNINTEINIKEVLPELEKFGLENEPITIQDHFIHRWYYLRKQNINIKFWQKVGYEVRYIFKRESQTAGFKYWVNGQNVFNNNFQKLPAQTNSDELFETIAKILECATPILVNRNNAEGILTQIEFDIAIEEEKPFLKNLFDFISRGLSNGEVISNIQHLEYRERYTIKNHEQSCVIDFEYDKAGFFGRVLPLEKKCNSPELLAKIKSIVNHLKEADYVI
>NZ_CP041345.1|WP_173072939.1|777581_779282_-|response-regulator-transcription-factor
MKAILFHGDNLPTSLTDHFHGDKSAIDYSQASQNSNFVLDRFLHDSLSKAFQNKAYDVIFIPYTLSQQNYFELTGLRVAAHIRVTKEFRHHLVPIVFIGIETPNQIAKLSELGNILFTPGVFHIAKTDRDALKNEYILIQEHKPRISETEWEKCLKRLQLSPPANYQSHHSIDNELALLRWSTYLKCDNNILEVKENLQKGLYFKYYQALNPVAETKQGTPYLINGKGKVLLIDDEAKRGWGDFYRCFLQNNINNNTIKFDILEVEFKSLSQNEIIDRAIKKCEDADVVLLDLRLCDSDFKENKEPKELTGYKILEEIKKINKGIQVIITTASNKIWNYQSVQGLGANGYIIKRDDSNVAEDIKNLKQVVEGSINRASYLKPVNQSINQLSKSLTTAIKNKKFDKHIGKELIKILQLSYNMYEKANSKDDFAYAYISLFKCLELIAGEYVFKNDENKWCIKGPQELKQYRWDEEKNKYTFTNTPNFKNNLPTTFEKVAGLCFQLLEYKDEDVQQLYYSIKRRNEFIHPSEKKLTDNLKTECDKIYFYEGYKILLEQVSQIIQKLLA

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Crispr_ID: NZ_CP041345_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041345_2

827857-828486

Orphan

Consensus_repeat	Method
GTCGTAATCCTTGTTTTAGTGGACGTTACTCTCTGAC	CRISPRCasFinder
GTCGTAATCCTTGTTTTAGTGGACGTTACTCTCTGAC	CRT
GTCGTAATCCTTGTTTTAGTGGACGTTACTCTCTGAC	PILER-CR
AGTCGTAATCCTTGTTTTAGTGGACGTTACTCTCTGAC	PILER-CR

8 spacers

The CRISPR arrays of NZ_CP041345_2

>merge|NZ_CP041345|2|827857-828486|CRISPRCasFinder,CRT,PILER-CR,PILER-CR
AATCAAATCCTTGTTTTAGTGGACGTTACTCTCTGACAAATCCAAATAGAAAAACAAAAGTAGTTATACAGATTCGTCGTAATCCTTGTTTTAGTGGACGTTACTCTCTGACCCGTTCTTATAGAGATTTTAGCCGATGTGGATCAACTGTCGTAATCCTTGTTTTAGTGGACGTTACTCTCTGACAAGTATTAATTTGTAATAAACTCGACTCCAGACTTGGTCGTAATCCTTGTTTTAGTGGACGTTACTCTCTGACTCATATATTCAATATCCTCTTTGCCTACTATCCAATAGTCGTAATCCTTGTTTTAGTGGACGTTACTCTCTGACTTTTTTATAATGGCGAGCATATTGATTTTGAACTGCCAGTCGTAATCCTTGTTTTAGTGGACGTTACTCTCTGACTATATAGAGAAAAATTCTTTAAATGAAATTTATAAGTGTCGTAATCCTTGTTTTAGTGGACGTTACTCTCTGACGCCTGGATAAATGGGCGACATACGAGGGGGAAGGGATAGTCGTAATCCTTGTTTTAGTGGACGTTACTCTCTGACGTGTGATACGTTGAATTCACCGTCAGCCTCCTACTAGTCGTAATCCTTGTTTTAGTGGACGTTACTCTCTGAC

>NZ_CP041345|2|2|827857-828486|CRISPRCasFinder
AATCAAATCCTTGTTTTAGTGGACGTTACTCTCTGAC	AAATCCAAATAGAAAAACAAAAGTAGTTATACAGATTC
GTCGTAATCCTTGTTTTAGTGGACGTTACTCTCTGAC	CCGTTCTTATAGAGATTTTAGCCGATGTGGATCAACT
GTCGTAATCCTTGTTTTAGTGGACGTTACTCTCTGAC	AAGTATTAATTTGTAATAAACTCGACTCCAGACTTG
GTCGTAATCCTTGTTTTAGTGGACGTTACTCTCTGAC	TCATATATTCAATATCCTCTTTGCCTACTATCCAATA
GTCGTAATCCTTGTTTTAGTGGACGTTACTCTCTGAC	TTTTTTATAATGGCGAGCATATTGATTTTGAACTGCCA
GTCGTAATCCTTGTTTTAGTGGACGTTACTCTCTGAC	TATATAGAGAAAAATTCTTTAAATGAAATTTATAAGT
GTCGTAATCCTTGTTTTAGTGGACGTTACTCTCTGAC	GCCTGGATAAATGGGCGACATACGAGGGGGAAGGGATA
GTCGTAATCCTTGTTTTAGTGGACGTTACTCTCTGAC	GTGTGATACGTTGAATTCACCGTCAGCCTCCTACTA
GTCGTAATCCTTGTTTTAGTGGACGTTACTCTCTGAC

>NZ_CP041345|2|1|827857-828486|CRT
AATCAAATCCTTGTTTTAGTGGACGTTACTCTCTGAC	AAATCCAAATAGAAAAACAAAAGTAGTTATACAGATTC
GTCGTAATCCTTGTTTTAGTGGACGTTACTCTCTGAC	CCGTTCTTATAGAGATTTTAGCCGATGTGGATCAACT
GTCGTAATCCTTGTTTTAGTGGACGTTACTCTCTGAC	AAGTATTAATTTGTAATAAACTCGACTCCAGACTTG
GTCGTAATCCTTGTTTTAGTGGACGTTACTCTCTGAC	TCATATATTCAATATCCTCTTTGCCTACTATCCAATA
GTCGTAATCCTTGTTTTAGTGGACGTTACTCTCTGAC	TTTTTTATAATGGCGAGCATATTGATTTTGAACTGCCA
GTCGTAATCCTTGTTTTAGTGGACGTTACTCTCTGAC	TATATAGAGAAAAATTCTTTAAATGAAATTTATAAGT
GTCGTAATCCTTGTTTTAGTGGACGTTACTCTCTGAC	GCCTGGATAAATGGGCGACATACGAGGGGGAAGGGATA
GTCGTAATCCTTGTTTTAGTGGACGTTACTCTCTGAC	GTGTGATACGTTGAATTCACCGTCAGCCTCCTACTA
GTCGTAATCCTTGTTTTAGTGGACGTTACTCTCTGAC

>NZ_CP041345|2|1|827932-828115|PILER-CR
GTCGTAATCCTTGTTTTAGTGGACGTTACTCTCTGAC	CCGTTCTTATAGAGATTTTAGCCGATGTGGATCAACT
GTCGTAATCCTTGTTTTAGTGGACGTTACTCTCTGAC	AAGTATTAATTTGTAATAAACTCGACTCCAGACTTG
GTCGTAATCCTTGTTTTAGTGGACGTTACTCTCTGACTCATATATTCAATATCCTCTTTGCCTACTATCCAATAGTCGTAATCCTTGTTTTAGTGGACGTTACTCTCTGAC	TTTTTTATAATGGCGAGCATATTGATTTTGAACTGCC
AGTCGTAATCCTTGTTTTAGTGGACGTTACTCTCTGAC	TATATAGAGAAAAATTCTTTAAATGAAATTTATAAG
TGTCGTAATCCTTGTTTTAGTGGACGTTACTCTCTGAC	GCCTGGATAAATGGGCGACATACGAGGGGGAAGGGAT
AGTCGTAATCCTTGTTTTAGTGGACGTTACTCTCTGAC	GTGTGATACGTTGAATTCACCGTCAGCCTCCTACT


>NZ_CP041345|2|2|828152-828486|PILER-CR
	CCGTTCTTATAGAGATTTTAGCCGATGTGGATCAACT
GTCGTAATCCTTGTTTTAGTGGACGTTACTCTCTGAC	AAGTATTAATTTGTAATAAACTCGACTCCAGACTTG
GTCGTAATCCTTGTTTTAGTGGACGTTACTCTCTGACTCATATATTCAATATCCTCTTTGCCTACTATCCAATAGTCGTAATCCTTGTTTTAGTGGACGTTACTCTCTGAC	TTTTTTATAATGGCGAGCATATTGATTTTGAACTGCC
AGTCGTAATCCTTGTTTTAGTGGACGTTACTCTCTGAC	TATATAGAGAAAAATTCTTTAAATGAAATTTATAAG
TGTCGTAATCCTTGTTTTAGTGGACGTTACTCTCTGAC	GCCTGGATAAATGGGCGACATACGAGGGGGAAGGGAT
AGTCGTAATCCTTGTTTTAGTGGACGTTACTCTCTGAC	GTGTGATACGTTGAATTCACCGTCAGCCTCCTACT
AGTCGTAATCCTTGTTTTAGTGGACGTTACTCTCTGAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041345.1\|WP_173073009.1\|829444_830191_+\|twitching-motility-protein-PilT	unknown	unknown	gnl\|CDD\|376668
NZ_CP041345.1\|WP_173073002.1\|823967_824684_-\|noncanonical-pyrimidine-nucleotidase,-YjjG-family	unknown	unknown	gnl\|CDD\|162788
NZ_CP041345.1\|WP_173073016.1\|833615_836081_+\|PD40-domain-containing-protein	unknown	unknown	gnl\|CDD\|143586
NZ_CP041345.1\|WP_173073011.1\|830372_832226_+\|2-oxoacid:acceptor-oxidoreductase-subunit-alpha	unknown	unknown	gnl\|CDD\|274738
NZ_CP041345.1\|WP_173073024.1\|838792_839563_+\|AMP-nucleosidase	unknown	unknown	gnl\|CDD\|235940
NZ_CP041345.1\|WP_173073018.1\|836080_836644_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NZ_CP041345.1\|WP_173073026.1\|839572_840619_+\|DNA-polymerase-III-subunit-delta	unknown	unknown	gnl\|CDD\|273455
NZ_CP041345.1\|WP_173072998.1\|821110_822118_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274623
NZ_CP041345.1\|WP_173072994.1\|818128_819241_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041345.1\|WP_173072992.1\|816887_817838_-\|lytic-transglycosylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|381615
NZ_CP041345.1\|WP_173073022.1\|838111_838579_-\|type-I-restriction-enzyme-HsdR-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|372640
NZ_CP041345.1\|WP_173073007.1\|828869_829400_-\|gamma-carbonic-anhydrase-family-protein	unknown	unknown	gnl\|CDD\|100051
NZ_CP041345.1\|WP_173072988.1\|812338_814018_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041345.1\|WP_173073000.1\|822429_823965_+\|replicative-DNA-helicase	unknown	unknown	gnl\|CDD\|273206
NZ_CP041345.1\|WP_173072990.1\|814022_816878_-\|excinuclease-ABC-subunit-UvrA	unknown	unknown	gnl\|CDD\|234734
NZ_CP041345.1\|WP_173073003.1\|824874_826761_+\|aldehyde-ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|225277
NZ_CP041345.1\|WP_173073013.1\|832228_833257_+\|2-oxoacid:ferredoxin-oxidoreductase-subunit-beta	unknown	unknown	gnl\|CDD\|237006
NZ_CP041345.1\|WP_173073005.1\|826822_827188_-\|RNA-binding-protein	unknown	unknown	gnl\|CDD\|240845
NZ_CP041345.1\|WP_173073020.1\|836646_838107_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|223594
NZ_CP041345.1\|WP_173072996.1\|819314_820985_-\|formate--tetrahydrofolate-ligase	unknown	unknown	gnl\|CDD\|376511

Protein	Function_ID	Function_description	E-value
NZ_CP041345.1\|WP_173073009.1\|829444_830191_+\|twitching-motility-protein-PilT	gnl\|CDD\|376668	pfam01927, Mut7-C, Mut7-C RNAse domain. RNAse domain of the PIN fold with an inserted Zinc Ribbon at the C-terminus.	7.8875e-61
NZ_CP041345.1\|WP_173073024.1\|838792_839563_+\|AMP-nucleosidase	gnl\|CDD\|235940	PRK07115, PRK07115, AMP nucleosidase; Provisional.	5.32488e-176
NZ_CP041345.1\|WP_173073016.1\|833615_836081_+\|PD40-domain-containing-protein	gnl\|CDD\|143586	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA. OmpA-like domains (named after the C-terminal domain of Escherichia coli OmpA protein) have been shown to non-covalently associate with peptidoglycan, a network of glycan chains composed of disaccharides, which are crosslinked via short peptide bridges. Well-studied members of this family include the Escherichia coli outer membrane protein OmpA, the Escherichia coli lipoprotein PAL, Neisseria meningitdis RmpM, which interact with the outer membrane, as well as the Escherichia coli motor protein MotB, and the Vibrio flagellar motor proteins PomB and MotY, which interact with the inner membrane.	7.10717e-35
NZ_CP041345.1\|WP_173072998.1\|821110_822118_-\|hypothetical-protein	gnl\|CDD\|274623	TIGR03514, GldB_lipo, gliding motility-associated lipoprotein GldB.	5.22952e-73
NZ_CP041345.1\|WP_173073018.1\|836080_836644_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	1.5856e-23
NZ_CP041345.1\|WP_173073011.1\|830372_832226_+\|2-oxoacid:acceptor-oxidoreductase-subunit-alpha	gnl\|CDD\|274738	TIGR03710, OAFO_sf, 2-oxoacid:acceptor oxidoreductase, alpha subunit. This family of proteins contains a C-terminal thiamine diphosphate (TPP) binding domain typical of flavodoxin/ferredoxin oxidoreductases (pfam01855) as well as an N-terminal domain similar to the gamma subunit of the same group of oxidoreductases (pfam01558). The genes represented by this model are always found in association with a neighboring gene for a beta subunit (TIGR02177) which also occurs in a 4-subunit (alpha/beta/gamma/ferredoxin) version of the system. This alpha/gamma plus beta structure was used to define the set of sequences to include in this model. This pair of genes is not consistantly observed in proximity to any electron acceptor genes, but is found next to putative ferredoxins or ferredoxin-domain proteins in Azoarcus sp. EbN1, Bradyrhizobium japonicum USDA 110, Frankia sp. CcI3, Rhodoferax ferrireducens DSM 15236, Rhodopseudomonas palustris BisB5, Os, Sphingomonas wittichii RW1 and Streptomyces clavuligerus. Other potential acceptors are also sporadically observed in close proximity including ferritin-like proteins, reberythrin, peroxiredoxin and a variety of other flavin and iron-sulfur cluster-containing proteins. The phylogenetic distribution of this family encompasses archaea, a number of deeply-branching bacterial clades and only a small number of firmicutes and proteobacteria. The enzyme from Sulfolobus has been characterized with respect to its substrate specificity, which is described as wide, encompassing various 2-oxoacids such as 2-oxoglutarate, 2-oxobutyrate and pyruvate. The enzyme from Hydrogenobacter thermophilus has been shown to have a high specificity towards 2-oxoglutarate and is one of the key enzymes in the reverse TCA cycle in this organism. Furthermore, considering its binding of coenzyme A, it can be reasonably inferred that the product of the reaction is succinyl-CoA. The genes for this enzyme in Prevotella intermedia 17, Persephonella marina EX-H1 and Picrophilus torridus DSM 9790 are in close proximity to a variety of TCA cycle genes. Persephonella marina and P. torridus are believed to encode complete TCA cycles, and none of these contains the lipoate-based 2-oxoglutarate dehydrogenase (E1/E2/E3) system. That system is presumed to be replaced by this one. In fact, the lipoate system is absent in most organisms possessing a member of this family, providing additional circumstantial evidence that many of these enzymes are capable of acting as 2-oxoglutarate dehydrogenases and.	0
NZ_CP041345.1\|WP_173073026.1\|839572_840619_+\|DNA-polymerase-III-subunit-delta	gnl\|CDD\|273455	TIGR01128, DNA_polymerase_III_subunit_delta, DNA polymerase III, delta subunit. DNA polymerase III delta (holA) and delta prime (holB) subunits are distinct proteins encoded by separate genes. The delta prime subunit (holB) exhibits sequence homology to the tau and gamma subunits (dnaX), but the delta subunit (holA) does not demonstrate this same homology with dnaX. The delta, delta prime, gamma, chi and psi subunits form the gamma complex subassembly of DNA polymerase III holoenzyme, which couples ATP to assemble the ring-shaped beta subunit around DNA forming a DNA sliding clamp. [DNA metabolism, DNA replication, recombination, and repair].	5.43466e-39
NZ_CP041345.1\|WP_173072992.1\|816887_817838_-\|lytic-transglycosylase-domain-containing-protein	gnl\|CDD\|381615	cd16894, MltD-like, Membrane-bound lytic murein transglycosylase D and similar proteins. Lytic transglycosylases (LT) catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc). Membrane-bound lytic murein transglycosylase D protein (MltD) family members may have one or more small LysM domains, which may contribute to peptidoglycan binding. Unlike the similar "goose-type" lysozymes, LTs also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this family include the soluble and insoluble membrane-bound LTs in bacteria, the LTs in bacteriophage lambda, as well as the eukaryotic "goose-type" lysozymes (goose egg-white lysozyme; GEWL).	9.11267e-53
NZ_CP041345.1\|WP_173073022.1\|838111_838579_-\|type-I-restriction-enzyme-HsdR-N-terminal-domain-containing-protein	gnl\|CDD\|372640	pfam13588, HSDR_N_2, Type I restriction enzyme R protein N-terminus (HSDR_N). This family consists of a number of N terminal regions found in type I restriction enzyme R (HSDR) proteins. Restriction and modification (R/M) systems are found in a wide variety of prokaryotes and are thought to protect the host bacterium from the uptake of foreign DNA. Type I restriction and modification systems are encoded by three genes: hsdR, hsdM, and hsdS. The three polypeptides, HsdR, HsdM, and HsdS, often assemble to give an enzyme (R2M2S1) that modifies hemimethylated DNA and restricts unmethylated DNA.	3.21027e-44
NZ_CP041345.1\|WP_173073007.1\|828869_829400_-\|gamma-carbonic-anhydrase-family-protein	gnl\|CDD\|100051	cd04645, LbH_gamma_CA_like, Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.	1.7918e-72
NZ_CP041345.1\|WP_173073002.1\|823967_824684_-\|noncanonical-pyrimidine-nucleotidase,-YjjG-family	gnl\|CDD\|162788	TIGR02254, hydrolase_haloacid_dehalogenase-like_family, noncanonical pyrimidine nucleotidase, YjjG family. This HAD superfamily includes including YjjG from E. coli and YfnB from B. subtilis. YjjG has been shown to act as a house-cleaning enzyme, cleaving nucleotides with non-canonical nucleotide bases. This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).	3.81589e-53
NZ_CP041345.1\|WP_173073000.1\|822429_823965_+\|replicative-DNA-helicase	gnl\|CDD\|273206	TIGR00665, DnaB, replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of > 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP041345.1\|WP_173072990.1\|814022_816878_-\|excinuclease-ABC-subunit-UvrA	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
NZ_CP041345.1\|WP_173073003.1\|824874_826761_+\|aldehyde-ferredoxin-oxidoreductase	gnl\|CDD\|225277	COG2414, COG2414, Aldehyde:ferredoxin oxidoreductase [Energy production and conversion].	4.78931e-55
NZ_CP041345.1\|WP_173073013.1\|832228_833257_+\|2-oxoacid:ferredoxin-oxidoreductase-subunit-beta	gnl\|CDD\|237006	PRK11867, PRK11867, 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed.	1.37826e-147
NZ_CP041345.1\|WP_173073005.1\|826822_827188_-\|RNA-binding-protein	gnl\|CDD\|240845	cd12399, RRM_HP0827_like, RNA recognition motif in Helicobacter pylori HP0827 protein and similar proteins. This subfamily corresponds to the RRM of H. pylori HP0827, a putative ssDNA-binding protein 12rnp2 precursor, containing one RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). The ssDNA binding may be important in activation of HP0827. .	3.64565e-32
NZ_CP041345.1\|WP_173073020.1\|836646_838107_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl\|CDD\|223594	COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones].	5.79727e-85
NZ_CP041345.1\|WP_173072996.1\|819314_820985_-\|formate--tetrahydrofolate-ligase	gnl\|CDD\|376511	pfam01268, FTHFS, Formate--tetrahydrofolate ligase.	0

>NZ_CP041345.1|WP_173073005.1|826822_827188_-|RNA-binding-protein
MNIYVSGLSYRINDDDLRQLFEEYGEITSAKVITDRETGRSRGFGFVEMANDDEARKAIDELTEAEYDGKVIRVTQAKPKSDRPRNGGGFNRERRGGGYGERRGGFNRDNRGGGRGGRRDY
>NZ_CP041345.1|WP_173073003.1|824874_826761_+|aldehyde-ferredoxin-oxidoreductase
MSSSNPTIKALMIDAASGFYKVNRYNVGDFFGPVDLGIHLAHKHNSMNIGVGLLAGSIFPGSNRLIVNGISPCWHGFYISSMGGAGLVFDNLGINMFSIVGKASAPSILYLNRIHGEEIEVELLPVRPRTIWAQGRGGVYSMMQYALDNFGNRYETEPRILAAGPASMYTDFGAIASAPIRKGEITYVDTWAGRGGFGSKMVQQHNIVAIIYGGTYVDEDFRDRKVADRWFEDRYQKRLAAKDLEATTKYRFDPKFETGGTFGVNYATMKGDIMAFNYRTIYMTEEERLKIHNDFIVNHYLKQFNEETIKNKQQRTCGEPCGAVCKKMNGKYKKDYEPYQTMGPLCGIFDQRAAEKVNHHADMLGFDAISVGGVLSWLMDCVADGLITPEELGLNEVPVFSTNGFRVVEDSLHNANIAIALLDQMVNPNGAFHLREGARKFARHLARRKGTAVLDKFIYVGFARSGWMVPNQYWTPGVLSPMAIMGKYYMYYGKDFVPPRQLGRENAKRMLNELVMDNLGMCRFHRAWAEDILPEVIEKLYGMKDRFSRSLLLTASRINSRNASIFWESERNIDFVYTFLKKKKEIDGVSNPELDRWISLFEKDKRAAALDFWYEIHKGIHESLLEFH
>NZ_CP041345.1|WP_173073002.1|823967_824684_-|noncanonical-pyrimidine-nucleotidase,-YjjG-family
MILNFFFKHNAYKHIFFDLDRTLWDFEQNMRDALAEIFVNRKLDIAFPDKDTFIECYNRNNHYLWDKYLKGELTKDVLRYKRFDITLKEYGINNKELAKTIGEEYLEIMPLKTALIPGTHEVLEYLAPKYNLHILSNGFKEVQLPKLKRCKIDHYFEWVITSEHSGYHKPDKRAFGYALSKANAKKSESIMVGDDYEVDIMGAKKFGIDQIYFSPKNSKSNSKATFVVERLDEIKKIL
>NZ_CP041345.1|WP_173073000.1|822429_823965_+|replicative-DNA-helicase
MAGEKGRQKRQFSPLKQIGAELGKVPPQAVDIEEAVLGAIMIEKDAVIIASEILKPECFYKEQHQIIFKAIQDLSTRLEPIDLFTVTEELRKQGKLEEVGGAGYISLLANKVGSAAHLEYHSKIIAQKYIQRELIRVATEIEKRSFEENVDVDELLDFSEMELFKVAEGNIKSDTQPINSIVVKAFKQIEEAGKREDGLSGVPSGFTELDRLTSGWQKSDLIIVAARPSMGKTAFVLTMARNMAVEYDVPVALFSLEMSNVQLVNRLLVAESGLSSEKIRNGKLTQEEWTQLTVKTKQLADAQIFIDDTPALSIFELRAKCRRLKAQHNIGIVIIDYLQLMTGPAETKGNREQEVSTISRSLKAIAKELDVPIIALSQLNRSVETRGGNKRPQLSDLRESGAIEQDADVVIFIHRPEYYGFDVDDAGNSTVGLAEIIVAKHRNGAVDDVKLRFQKEMARFSDYEDNSYYGAVTPDFTSSAQVTFSSKMNNDPVDDFSSNLKKGLDNVDIPF
>NZ_CP041345.1|WP_173072998.1|821110_822118_-|hypothetical-protein
MKNRWIIVTLIITTLISCKQNRFDKIPTPKNSQEVKIVRFENDLFSLDTISIESEYKELSDKHTQFADLFTRGIIRIGKSDSLKFYHYLKMFLTDTMVQNCYRMVSETFPPNADFEKELKSAFARYSYFFPEKVMPKVYTYISGYNLSLAIDDSLVAVGLDRYLGKNTIQYTLLGIPRYIQRKMNPQKVSSDVMRAWLYGVFPFKDSVNNLLSRMIYEGQIMYLTKRMLPNQPDSLIFGYTPQQYKWCQRNEKNIWTYLIENKLLFTTNLLDINKMINDAPFTSGFSRESPGRTAVWIGYRIVEQFMERNQEYTLDDLMKVNDYQYILNKAKYKP
>NZ_CP041345.1|WP_173072996.1|819314_820985_-|formate--tetrahydrofolate-ligase
MKTDIEIAHEAKMKPITEIGEKLGINPDDLILYGKYKAKIPLKYINKEKYLQNKLILVSAISPTPAGEGKTTVSIGLSQGLNRIGKQTTVVLREPSLGPVFGIKGGATGGGYSQVLPMEDINLHFTGDFNAIEKAHNLLAALIDNNIQSKKRSLGIDPRTVKWKRVMDMNDRSLRHIIVGLGGTTHGIPRETGFDITAASEVMAILCLAENMEDLKRRLGNIFIGYTFDKKPVYARDLHAEGAMAALLRDAIMPNLVQTIEGTPAIIHGGPFANIAQGTNSVIATKMGLSLSDFVVTEAGFGFDLGAEKFIDIKCQYAGLKPSAVVLVATIRALKYHGGKPLKEVSQPDVEALKNGIGNLQKHVENMKQFGICPVVAINRFTSDTDEEVEVIKNACKEMDVQVAEVDVWGKGGEGAIELAKIVNKIAMNCPYQHKTLYDWNWTPEAKIETLAKRIYGAEAVDYTAQAKNDLKKVYELGLDKLPICVAKTQKSLSDNPALLGRPKDFVVTVREIEIAAGAGFIVPITGQIMRMPGLPEEPAAERIDVDNNGVISGLF
>NZ_CP041345.1|WP_173072994.1|818128_819241_+|hypothetical-protein
MKKLFFILWAFVLGSAFTYGNPDSILLQQNRMMLKLLSNSKVSTQIFLGYRDYLEGNNGYNEFVVKRGYITFAKKLNKNISAKLAPDITIDKEGDGMGDLEMRLKYCYIDFHTDGDYWIFTNPKLLVGEIPTPWISFEEKINSFRIVSSQYLDDMKLLTSADFGVSTQVLLGGEISEEYQKKVNGAYPGKYGSIAIGVYNGGGYHAIENNNNKTIQWRFSLRPIPNVLPGLQFSYAGTYGKGNTKLYPDWRTNTGVASYESEHIVLTSQIYKSTGNYSGSFSDSLGIAYGASGWNTFAEVKLFKNKVSLFGSYGIMNYDDMNQSDNELKRQIVGLAYHIYKRNKIVVDYQRRVKNGDANGIFEVMLELSL
>NZ_CP041345.1|WP_173072992.1|816887_817838_-|lytic-transglycosylase-domain-containing-protein
MIFSKRFSLVIKTFIAVFIFVILISFIPITKVFSYSEQQADTIFQATIYPVPIPDSLTFAGEAVPLEFFDVRESLDRELQVNTFWHSQTLLLLKRANRYFPIIEPILEANNIPIDFKYLAVAESGLTQAISPSKAVGFWQILEGTGEELGLEINNEVDERYHIEKSTQAACQYFKKAYEKYGNWTMVAASYNFGMNGIDKQILRQENDSYYNMVLGEETGRYIFRILALKVIFENPTQYGFILNKCDLYPPLEYYEVEVDSTITNISAFARHFKTNYKILKFFNPWLRESYLTNKLNKTYRIKIPKEGFRETVYKK
>NZ_CP041345.1|WP_173072990.1|814022_816878_-|excinuclease-ABC-subunit-UvrA
MSIESQNNILEANDEGKIEVEGARVHNLKNIDVVIPRHKLTVITGLSGSGKSSLAFDTIYAEGQRRYMETMSAYARQFLGTLERPDVDKISGLSPVISIEQKTTSHNPRSTVGTTTEIYDFLRLLYARASTAYSYNTGEEMVRYTDEQIIKLINKQFAGKKTALLAPLVRGRKGHYKELFEQLRKKGYLHVRVDGNIVEMRPAMKLDRYKTHHIELLVDKLKVGDGDMKRLSQSVANAMSIGKGIIMVLDMDTGENRYFSRNLMCPTTGISYDEPEPYTFSFNSPKGACPKCNGLGYVNEADIERIIPDKRISIKKGGIQALGPYKNSLIFWQLEAIATKYGFSLSDPIEKIPEEALDVILYGSEEQLKLKHPSIGVTSSYFLSFEGVINFIKEHNSNEELTGKGKKWANQFIRQVTCPSCNGSRLRKESLWFKIDDKSIADVTAMDLESLWEWLQGLENRLGNRQKVIATEILKEIRERVRFLLDVGLGYLSLNRGSSTLSGGESQRIRLATQIGSKLVNVLYILDEPSIGLHQRDNVKLINSLKQLRDAGNSVIVVEHYEEMIRSADYVVDIGPRAGRHGGKVVAAGTPSEIMKSDSLTANYLNGKLRIPTPSERRKGNGKFLTISGAKGNNLKNITAKFPLGTLICVTGVSGSGKSTLINETLYPALSRHFYRSFEQPLDYDTITGIENIDKVIDVDQSPIGRTPRSNPATYTGVFTDIRKLFALTPEAKIRGYKAGRFSFNVKGGRCETCKGGGVKVIEMNFLPDVYVKCPDCFGRRYNRETLEVKYKGKNISEVLDMTINQAVEFFENIPQIHQKLKALQDVGMGYVTLGQPSTTLSGGEAQRVKLASELAKRDTGKTLYILDEPTTGLHFEDVRVLLDVLNKLVDKGNTVIIIEHNLDVIKTADYIIDLGPDGGSGGGTIVCSGTPEEVAKSNCGYTAQFLKNLL
>NZ_CP041345.1|WP_173072988.1|812338_814018_+|hypothetical-protein
MKEISKNIILIFSVVLPFVLSAQENGNKSLFIDSTGNLFVSPDVPVNIYIGTKPDGSNAVLLHDVNRSGKPLKWNGSGPQLMTHLDLYKGRKIRFELYADGIPPKTAINFENQKIRELKDAIIVRGGSIVEFSAVDEQSGVDKIFFSVNSDDFKEYSQPISLTEDGEYEVRTYAVDHLGNKEPVVYRKIIVDATPPTTELTFRGDKYENILSGRSALVLNTSDRFGVAETKIMIDSSGKWNRYIKPIQTSRLSEGEHKISYFSIDNAGNVESSKTYTFYVDKTPPVVVEEIEGNSFMVGNREFSSGRSQLKVLAVDNKAGVKEVYYSLNNGEFRPYEKPVLLSEILGTVKLRTYAVDNVNNRTSSEANAQSFTMPTIDIAGPDISYGFIGPKLTIRDTLWIGSSTLVKINAVDREAGVNRIEYTLNQSEVRTYFEPFTITESGFYNADVSAFDNVENINMASFSFAVDNNPPSIFYNFSSLPIGAKDNLPVYQKGIVLYLAATDNLTVRNSIKYKLNNGKFLNYTSPISRFVSGINELVISTTDGLGNNSTQTIRFYVE
>NZ_CP041345.1|WP_173073007.1|828869_829400_-|gamma-carbonic-anhydrase-family-protein
MAIIKSLRGFTPKIGKNCFIAETAVIIGDVEIGDDCSIWYGAVLRGDVNSIRIGNRVNIQDNAVLHTTYKKTTIKVEDDVSIGHGVILHGAEVKQGALLGMGSTVMDNAVIGQGAIVAANALVLENTQVEPASVYAGVPAKFVKKVDPQLSRETNERIARNYLFYSGWYKEDKDKG
>NZ_CP041345.1|WP_173073009.1|829444_830191_+|twitching-motility-protein-PilT
MSKGFKKQVSIRLYGSLNDFVAQELKQTNISVGFWGNPTIKDLVESVGVPHTEINLILANSCPVNFSYKPESGSRISCYPKFFFLKNSESCLQPQVPMPPKFICDAHLGRLASYIRLCGFDTLFNTTFEDRTIIKTSNSEERIILTRDKGLLRCGSARLGYFVRETKPILQLREVIEYFELKDYLAPFSRCSLCNGKITDIEKKEVVNKVLPTTYRCYEKFYCCTKCGHVYWEGSHFRRLKLTLEGML
>NZ_CP041345.1|WP_173073011.1|830372_832226_+|2-oxoacid:acceptor-oxidoreductase-subunit-alpha
MDKQKSVQELDEVVVRFSGDSGDGMQLTGTLFADASALFGNDVSTFPDYPSEIRAPQGTVGGVSGFQVHFGNRKVNTPGDYCDVLVAMNPAALKANAKWVKKGGIIIVDVDQFNEKGYQRAGYKTFDAETELNLQDYKLIFAPITSLTKESLKDSGLDNKSIVRSKNMFALGMVYYLFERNMNFTERFFEKKFAKKPEIVEANKKVLHDGYNYAANIQAIANKYEVKQAETLPKGRYRNISGNTATAWGLIAAAEKAGLPLFCGSYPITPATEILIELAKRKDLGVKTLQAEDEIAGICTAIGASFAGNFAVTTTSGPGLSLKSEALGLAVMTELPLVVVDVQRGGPSTGLPTKTEQSDLMQALWGRNGEAPMVVIAASTPSNCFDYAFMAGKIAMEHMTPVMLLTDGYIANGSEPWKIPSMKDYPEIKPPIVPEGTKDYMPYARDAERLARGWALPGKKDIEHRLGGLEKDFLKGTVSHDPINHQKMVDIRAEKVKRVQEYIPEQEVFGDKEGELLVVGWGGTYGHLYDAVNEMRKAGKSVSLCHFNYINPLPKNTGEIFSKFKKIVVCELNLGQFANYLRMNFPEYKYMQYNKVQGLPFTVVELVDKFNQILEGK
>NZ_CP041345.1|WP_173073013.1|832228_833257_+|2-oxoacid:ferredoxin-oxidoreductase-subunit-beta
MEEQYTNYTPQDFKSDQEVRWCPGCGDHAILNAVIKALPEVSKELKYDMERYVFVSGIGCSSRFPYYVNTFGFHGIHGRAAAIATGVKVANPTLSVWQVSGDGDALAIGGNHFIHAVRRNIDINILLFNNQIYGLTKGQYSPTSPLGAITKTSPYGTVEHPFRPGELVIGAQGKFFARSLDVDVKLTKEILVEAAKHDGTSVVEILQNCVIFNDGAYSHITDRENREDRVIVLRHGEKMIFGKNRDKGLVLSGLSLKVVKIGEGGFTMDDILVHDAYNPNPGIHMMLANMQYPDYPVALGVIRNVKDSTYDDNVRDQVLEVMKNSKIKCVDDLLNSGDTWEL
>NZ_CP041345.1|WP_173073016.1|833615_836081_+|PD40-domain-containing-protein
MVKKFVKYILLVVAMASFGIVQAQESFKELFNDAEYYFFLKDYKEALPLYNKLYSLDSANSNIIYKIGLCYLNIPGLKEKAIPYLEKASQNISKWYREGYYREKNAPLDVLFYLGQAYEVNFQFDKALEAYKKFKEKIEVRDIFSLDYVNQQIKACEIANDYISRPITLKTEHLNLFKNTRKSCTYPVVSGDRQTMVFTVKEKFYTAVYYTKCVDGKWETPKNVTLDLRVEGELYTTSLNYSGDYLIIFVNEITSGNLYYSTIKDGKWQPVKKLPSPINSRDWETFASLSPDGKQLYFTSNRKGGYGGIDIYVSNLMPNGKWSEPVNLGPQINTAYNEESPILCPNGKTLYFASQGHNSMGGFDIFYSSKIGDGAWSVPTNVGYPFNTPDDEYFFFPVDSLTGYMPMVVENQSSIYEIYKVSIYPSIAKKIKLFGNVKLSDNADVKSDSITILVKDTSNNTVAMALPLNDGSYSVDIKPGTYKIFASSEFYIMDTLMLNIPLTYNQEKYPLDLNLRAKPTTNEEVIKFNYILFDFNSYELKREALFELEKIYKLMIDYPDLYIEVIGHTDSKGAPAVNLLLSARRANAVVEYLVNKGIDEKRFVVRGMGSMVSFAANTNPDGSDNPHGRKLNRRVSIRVFNPNKNIKIEYVDIPEHLKPQNQKYTIMLSPINDTISPELVKRIEKFFDFRLREFKIGSRSITCMGVYETKADAIQDLNTIIDLGATRAMLINEDEMQRFITALQKNVITQKTVFTILVATSEIPLTQDFFRGLYVTEEVGDDGIYRYYYGLFDSKEKASKMLENVNSMGYPNAILVKLNKR
>NZ_CP041345.1|WP_173073018.1|836080_836644_+|GNAT-family-N-acetyltransferase
MNNILESSHVKLRAPEPEDVDLLYSWENNMEIWTVSNTLTPFSKYLLKKYIETSHLDIWESKQLRLIVEAKDQNSLMNVPVGLVDLFDFDPFHSRAGVGVLIAQKENRKKGYATEALKLLVRYSFEILQLNQLYANISSSNEVSLKLFQNLGFTEVGVKKAWLKVKGGWEDEVMLQLLNPKPRIPKS
>NZ_CP041345.1|WP_173073020.1|836646_838107_-|aminotransferase-class-V-fold-PLP-dependent-enzyme
MSNLEKHFDQFRKNIVGIDATYKTIYGEQKLVYADWIASGRLYRPIEEKMLHLFGPMVANTHTESSYTGKFMTEAYHYALKEIKRHVNAGPEDVIVTSGFGMTSSINKFQRILGLKNKSFVFENPKERPVVFVTHMEHHSNQTSWYETIAEVVVVEPDENLLVSPQKLRETLEKYEDRPMKIGSFTACSNVTGIKTPYHELAKIMHEFGGLCFVDFAASAPYVEINMHPEDPMAKLDAIFFSPHKFLGGPGASGVLIFNSNLYKNRVPDNPGGGTVDWTNPWGEYKYIDDIERREDGGTPGFLQAIRSSLAIRLKEQMGVENIEKREKELVELAFSKIKDIKGLRILADNCLDRIGALSFYIDGLHYNLVVKLLSERYGIQMRGGCVCAGTYGHFLLHVSKEQSHRITELINKGDLSEKPGWIRWSLHPTTTNQEVEFIANALSEIAEKGKEWEKDYTYCKQTNEFCHKNPKAEELWKNVEEHFIL
>NZ_CP041345.1|WP_173073022.1|838111_838579_-|type-I-restriction-enzyme-HsdR-N-terminal-domain-containing-protein
MSNSLNNKLNLPSYQFRIKKQNGNRLIFDIVRKRFITLTPEEWVRQHIIHYLVYDLNVPIGLIGVEVGFNYNKVNHRADIVVYNREGFPLMIVECKAPSVEISQDVVDQICRYNYILQAEYLLISNGIKHIVLQVDTENKWKVLDNFPNLTIKIK
>NZ_CP041345.1|WP_173073024.1|838792_839563_+|AMP-nucleosidase
MKTKEEIVQNWLPRYTGQALEDFGSHILLTNFRGYLEYFANYHNVPIVNPNANMPCATANGITMIDFGMGSPNAATIMDLLSAVKPKAVLFLGKCGGLKKKNNVGDFILPIAAIRHEGTSNDYMPPEVPALPAFTLQRVVSSTIRNHNRDYWTGTVVTTNRRVWEYDDNFKEYLRRTRAMAIDMETATIFTVGFYNEIPTGALLLVTDQPMISEGVKTTESDQKVNSLFVEEQIQIGIESLTRLINNSQSVKHLRF
>NZ_CP041345.1|WP_173073026.1|839572_840619_+|DNA-polymerase-III-subunit-delta
MAKQSQTVEAFNRIMGELKNKIYKPIYFLTGDEPYFIDKIAEYIEHNVLSDSDKAFNQTVVYGRDTTVNDVINAARRFPMMSNYQVLIVKEAQNIKNLSDLEIYLKTPLESTILVVCHKLSSDGKKPSSKLSGVIKLAKQKGVAFESKKFYDYQIPDWIIGYLSSKGLKIDPVAANLLAEFVGNDLSRIAKELDKLIITLPPETKQVQPVDIERNIGVSRDFNRFELTKALGEANFARAYKIADHFAKNPNANPFVLTITAIYQYFVKILKYHLLPDKNKSSVAKALGVHEFFVSEYERAAKRYPAGRCVSIIHLLSDYDMRSKGVNNSSTDHGELLKELIYLIVFGR

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Crispr_ID: NZ_CP041345_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP041345_3

997013-997970

orTypeII

Consensus_repeat	Method
GCTGTGACCAATATGTCAAAGATACAATCTGAAAGCAATTCACAAC	PILER-CR
GCTGTGACCAATATGTCAAAGATACAATCTGAAAGCAATTCACAAC	CRISPRCasFinder

12 spacers

cas2,cas1,cas9

The CRISPR arrays of NZ_CP041345_3

>merge|NZ_CP041345|3|997013-997970|PILER-CR,CRISPRCasFinder
GCTGTGACCAATATGTCAAAGATACAATCTGAAAGCAATTCACAACTTATTATACTCAATTATATATACTTGTTTAGCTGTGACCAATATGTCAAAGATACAATCTGAAAGCAATTCACAACTTCACCCATACATATTTAAAGAAAACCAGAGCTGTGACCAATATGTCAAAGATACAATCTGAAAGCAATTCACAACATCTCTCCTGTAATGATGATACGAGACTTAGCTGTGACCAATATGTCAAAGATACAATCTGAAAGCAATTCACAACGAGAGAAGATGTAGGTAGCATCAACGATTAGCTGTGACCAATATGTCAAAGATACAATCTGAAAGCAATTCACAACAGACTCATTGCATCAATACGCGCCTGGTAGGCTGTGACCAATATGTCAAAGATACAATCTGAAAGCAATTCACAACTTGCTTGCTATCTCTTCTAATGTGTTCTCGGCTGTGACCAATATGTCAAAGATACAATCTGAAAGCAATTCACAACAGGTTAATCGCCTACCAGCAGATAACGCTAGCTGTGACCAATATGTCAAAGATACAATCTGAAAGCAATTCACAACAGAGCAGCATTTAGTGTCTTTATGGGAAATGCTGTGACCAATATGTCAAAGATACAATCTGAAAGCAATTCACAACATCTCGGCTCTGCGCTATCGGCAACTATTAGCTGTGACCAATATGTCAAAGATACAATCTGAAAGCAATTCACAACAAAGATATTCTTACCTGTTTCCTCAGATACGCTGTGACCAATATGTCAAAGATACAATCTGAAAGCAATTCACAACAATTGCTGTGAGGTGCTTCCTATCCGATGAGCTGTGACCAATATGTCAAAGATACAATCTGAAAGCAATTCACAACTCAGAGGTTGGAACTGGAATACTGAAAGTTGCTGTGACCAATATGTCAAAGATACAATCTGAAAGCAATTTACAAC

>NZ_CP041345|3|3|997013-997970|PILER-CR
GCTGTGACCAATATGTCAAAGATACAATCTGAAAGCAATTCACAAC	TTATTATACTCAATTATATATACTTGTTTA
GCTGTGACCAATATGTCAAAGATACAATCTGAAAGCAATTCACAAC	TTCACCCATACATATTTAAAGAAAACCAGA
GCTGTGACCAATATGTCAAAGATACAATCTGAAAGCAATTCACAAC	ATCTCTCCTGTAATGATGATACGAGACTTA
GCTGTGACCAATATGTCAAAGATACAATCTGAAAGCAATTCACAAC	GAGAGAAGATGTAGGTAGCATCAACGATTA
GCTGTGACCAATATGTCAAAGATACAATCTGAAAGCAATTCACAAC	AGACTCATTGCATCAATACGCGCCTGGTAG
GCTGTGACCAATATGTCAAAGATACAATCTGAAAGCAATTCACAAC	TTGCTTGCTATCTCTTCTAATGTGTTCTCG
GCTGTGACCAATATGTCAAAGATACAATCTGAAAGCAATTCACAAC	AGGTTAATCGCCTACCAGCAGATAACGCTA
GCTGTGACCAATATGTCAAAGATACAATCTGAAAGCAATTCACAAC	AGAGCAGCATTTAGTGTCTTTATGGGAAAT
GCTGTGACCAATATGTCAAAGATACAATCTGAAAGCAATTCACAAC	ATCTCGGCTCTGCGCTATCGGCAACTATTA
GCTGTGACCAATATGTCAAAGATACAATCTGAAAGCAATTCACAAC	AAAGATATTCTTACCTGTTTCCTCAGATAC
GCTGTGACCAATATGTCAAAGATACAATCTGAAAGCAATTCACAAC	AATTGCTGTGAGGTGCTTCCTATCCGATGA
GCTGTGACCAATATGTCAAAGATACAATCTGAAAGCAATTCACAAC	TCAGAGGTTGGAACTGGAATACTGAAAGTT
GCTGTGACCAATATGTCAAAGATACAATCTGAAAGCAATTTACAAC

>NZ_CP041345|3|3|997013-997970|CRISPRCasFinder
GCTGTGACCAATATGTCAAAGATACAATCTGAAAGCAATTCACAAC	TTATTATACTCAATTATATATACTTGTTTA
GCTGTGACCAATATGTCAAAGATACAATCTGAAAGCAATTCACAAC	TTCACCCATACATATTTAAAGAAAACCAGA
GCTGTGACCAATATGTCAAAGATACAATCTGAAAGCAATTCACAAC	ATCTCTCCTGTAATGATGATACGAGACTTA
GCTGTGACCAATATGTCAAAGATACAATCTGAAAGCAATTCACAAC	GAGAGAAGATGTAGGTAGCATCAACGATTA
GCTGTGACCAATATGTCAAAGATACAATCTGAAAGCAATTCACAAC	AGACTCATTGCATCAATACGCGCCTGGTAG
GCTGTGACCAATATGTCAAAGATACAATCTGAAAGCAATTCACAAC	TTGCTTGCTATCTCTTCTAATGTGTTCTCG
GCTGTGACCAATATGTCAAAGATACAATCTGAAAGCAATTCACAAC	AGGTTAATCGCCTACCAGCAGATAACGCTA
GCTGTGACCAATATGTCAAAGATACAATCTGAAAGCAATTCACAAC	AGAGCAGCATTTAGTGTCTTTATGGGAAAT
GCTGTGACCAATATGTCAAAGATACAATCTGAAAGCAATTCACAAC	ATCTCGGCTCTGCGCTATCGGCAACTATTA
GCTGTGACCAATATGTCAAAGATACAATCTGAAAGCAATTCACAAC	AAAGATATTCTTACCTGTTTCCTCAGATAC
GCTGTGACCAATATGTCAAAGATACAATCTGAAAGCAATTCACAAC	AATTGCTGTGAGGTGCTTCCTATCCGATGA
GCTGTGACCAATATGTCAAAGATACAATCTGAAAGCAATTCACAAC	TCAGAGGTTGGAACTGGAATACTGAAAGTT
GCTGTGACCAATATGTCAAAGATACAATCTGAAAGCAATTTACAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP041345.1\|WP_173073254.1\|989587_990028_-\|TPM-domain-containing-protein	unknown	unknown	gnl\|CDD\|377378
NZ_CP041345.1\|WP_173073280.1\|1004819_1008314_-\|type-IX-secretion-system-sortase-PorU	unknown	unknown	gnl\|CDD\|199210
NZ_CP041345.1\|WP_173073276.1\|1002988_1003468_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|376811
NZ_CP041345.1\|WP_173073274.1\|1002597_1002984_-\|CoA-binding-protein	unknown	unknown	gnl\|CDD\|379152
NZ_CP041345.1\|WP_173073256.1\|990152_990758_-\|LemA-family-protein	unknown	unknown	gnl\|CDD\|377192
NZ_CP041345.1\|WP_173073264.1\|996526_996868_+\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_CP041345.1\|WP_173073262.1\|995558_996467_+\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
NZ_CP041345.1\|WP_173073270.1\|1001873_1002278_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041345.1\|WP_173073247.1\|987134_987905_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224495
NZ_CP041345.1\|WP_173073268.1\|999829_1001845_+\|urocanate-hydratase	unknown	unknown	gnl\|CDD\|235448
NZ_CP041345.1\|WP_173073284.1\|1009540_1011076_+\|SUMF1/EgtB/PvdO-family-nonheme-iron-enzyme	unknown	unknown	gnl\|CDD\|132563
NZ_CP041345.1\|WP_173073252.1\|988731_989505_-\|TPM-domain-containing-protein	unknown	unknown	gnl\|CDD\|224429
NZ_CP041345.1\|WP_173073249.1\|988115_988607_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041345.1\|WP_173073272.1\|1002274_1002604_-\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239245
NZ_CP041345.1\|WP_173073245.1\|986036_987131_+\|Nif3-like-dinuclear-metal-center-hexameric-protein	unknown	unknown	gnl\|CDD\|376614
NZ_CP041345.1\|WP_173073282.1\|1008423_1009458_+\|PorP/SprF-family-type-IX-secretion-system-membrane-protein	unknown	unknown	gnl\|CDD\|274625
NZ_CP041345.1\|WP_173073260.1\|994886_995519_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP041345.1\|WP_173073258.1\|991109_994847_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	cd09643_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187774
NZ_CP041345.1\|WP_173073266.1\|998232_999369_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|376582
NZ_CP041345.1\|WP_173073278.1\|1003471_1004659_-\|type-IX-secretion-system-outer-membrane-channel-protein-PorV	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP041345.1\|WP_173073254.1\|989587_990028_-\|TPM-domain-containing-protein	gnl\|CDD\|377378	pfam04536, TPM_phosphatase, TPM domain. This family was first named TPM domain after its founding proteins: TLP18.3, Psb32 and MOLO-1. In Arabidopsis, this domain is called the thylakoid acid phosphatase -TAP - domain and has a Rossmann-like fold. In plants, the family resides in the thylakoid lumen attached to the outer membrane of the chloroplast/plastid. It is active in the photosystem II.	6.04147e-26
NZ_CP041345.1\|WP_173073274.1\|1002597_1002984_-\|CoA-binding-protein	gnl\|CDD\|379152	pfam13380, CoA_binding_2, CoA binding domain. This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases.	1.96899e-27
NZ_CP041345.1\|WP_173073256.1\|990152_990758_-\|LemA-family-protein	gnl\|CDD\|377192	pfam04011, LemA, LemA family. The members of this family are related to the LemA protein. LemA contains an amino terminal predicted transmembrane helix. It has been predicted that the small amino terminus is extracellular. The exact molecular function of this protein is uncertain.	4.70396e-84
NZ_CP041345.1\|WP_173073264.1\|996526_996868_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.60194e-29
NZ_CP041345.1\|WP_173073262.1\|995558_996467_+\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	6.51325e-112
NZ_CP041345.1\|WP_173073247.1\|987134_987905_+\|hypothetical-protein	gnl\|CDD\|224495	COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only].	8.71697e-21
NZ_CP041345.1\|WP_173073268.1\|999829_1001845_+\|urocanate-hydratase	gnl\|CDD\|235448	PRK05414, PRK05414, urocanate hydratase; Provisional.	0
NZ_CP041345.1\|WP_173073284.1\|1009540_1011076_+\|SUMF1/EgtB/PvdO-family-nonheme-iron-enzyme	gnl\|CDD\|132563	TIGR03524, gliding_motility_protein_GldJ, gliding motility-associated lipoprotein GldJ. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldJ is a lipoprotein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae. Knockouts of GldJ abolish the gliding phenotype. GldJ is homologous to GldK. There is a GldJ homolog in Cytophaga hutchinsonii and several other species that has a different, shorter architecture and is represented by a separate model. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.	1.74645e-150
NZ_CP041345.1\|WP_173073252.1\|988731_989505_-\|TPM-domain-containing-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	4.16514e-52
NZ_CP041345.1\|WP_173073280.1\|1004819_1008314_-\|type-IX-secretion-system-sortase-PorU	gnl\|CDD\|199210	cd02258, Peptidase_C25_N, Peptidase C25 family N-terminal domain, found in Arg-gingipain (Rgp), Lys-gingipain (Kgp) and related proteins. Peptidase family C25 is a unique class of cysteine proteases, exemplified by gingipain, which is produced by Porphyromonas gingivalis. P. gingivalis is one of the primary gram-negative pathogens that causes periodontitis, a disease that is also associated with other diseases such as diabetes and cardiovascular disease. Gingipains are a group of extracellular Arg- and Lys-specific proteinases called Arg-gingipain (Rgp) and Lys-gingipain (Kgp); RgpA and RgpB are homologous Arg-specific gingipains encoded by two closely related genes, rgpA and rgpB, while Lys-specific gingipain is encoded by the single kgp gene. Mutant studies have shown that, among the large quantities of proteolytic enzymes produced by P. gingivalis, these three proteases are major virulence factors of this bacterium. All three genes encode an N-terminal pre-pro fragment, followed by the protease domain; however, rgpA and kgp also encode additional C-terminal HA (hemaglutinin/adhesion) subunits which consist of several sequence-related adhesion domains. Although unique, their cysteine protease active site residues (His and Cys) forming the catalytic dyad are well-conserved, cleaving the C-terminal peptide bond with Arg or Lys residues. Gingipains are evolutionarily related to other highly specific proteases including caspases, clostripain, legumains, and separase. Gingipains function by dysregulating host defense and inflammatory responses, and degrading host proteins, e.g. tissue, cells, matrix, plasma and immunological proteins. They are proposed to enhance gingival crevicular fluid (GCF) production through activation of the kallikrein/kinin pathways, thus increasing vascular permeability and causing gingival inflammation, a distinctive feature of periodontitis. RgpA and RgpB are also able to cleave and activate coagulation factors IX and X in order to activate prothrombin to produce thrombin, which in turn increases production of GCF. The gingipains also play a pivotal role in the survival of P. gingivalis in the host by attacking the host defense system through cleavage of several immunological molecules, while at the same time evading the host-immune response by dysregulating the cytokine network.	5.16771e-134
NZ_CP041345.1\|WP_173073272.1\|1002274_1002604_-\|thioredoxin-family-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	1.91245e-15
NZ_CP041345.1\|WP_173073245.1\|986036_987131_+\|Nif3-like-dinuclear-metal-center-hexameric-protein	gnl\|CDD\|376614	pfam01784, NIF3, NIF3 (NGG1p interacting factor 3). This family contains several NIF3 (NGG1p interacting factor 3) protein homologs. NIF3 interacts with the yeast transcriptional coactivator NGG1p which is part of the ADA complex, the exact function of this interaction is unknown.	4.28374e-50
NZ_CP041345.1\|WP_173073282.1\|1008423_1009458_+\|PorP/SprF-family-type-IX-secretion-system-membrane-protein	gnl\|CDD\|274625	TIGR03519, bacteroidetes-specific_membrane_protein, type IX secretion system membrane protein, PorP/SprF family. This model describes a protein family unique to, and greatly expanded in, the Bacteriodetes. Species in this lineage include several, such as Cytophaga hutchinsonii and Flavobacterium johnsoniae, that have type IX secretion systems (T9SS) and exhibit a poorly understood rapid gliding phenotype. Several members of this protein family are found in operons with other genes whose loss leads to a loss a this motility.	9.49996e-45
NZ_CP041345.1\|WP_173073276.1\|1002988_1003468_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|376811	pfam02542, YgbB, YgbB family. The ygbB protein is a putative enzyme of deoxy-xylulose pathway (terpenoid biosynthesis).	3.52249e-94
NZ_CP041345.1\|WP_173073258.1\|991109_994847_+\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|187774	cd09643, Csn1, CRISPR/Cas system-associated protein Cas9. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Very large protein containing McrA/HNH-nuclease related domain and a RuvC-like nuclease domain; signature gene for type II.	8.60662e-74
NZ_CP041345.1\|WP_173073266.1\|998232_999369_+\|ATP-binding-protein	gnl\|CDD\|376582	pfam01637, ATPase_2, ATPase domain predominantly from Archaea. This family contain a conserved P-loop motif that is involved in binding ATP. There are eukaryote members as well as archaeal members in this family.	4.85353e-07

>NZ_CP041345.1|WP_173073264.1|996526_996868_+|CRISPR-associated-endonuclease-Cas2
MTTLNRLNQYRVMWVLVFFDLPTETKKERKQYALFRKNLLKDGFSMFQFSIYTRCCPSRENADVHIKRVKSFLPPNGYVGILCITDKQFGSMELFLSTKPIKASTEPQQLELF
>NZ_CP041345.1|WP_173073262.1|995558_996467_+|type-II-CRISPR-associated-endonuclease-Cas1
MIKRTLYFGNPAYLKARDEQMVIEYPGGDTESKSIPIEDIGVVILDSPQITITHVLLNKLLENNAAVITTNERHMPSGLLYPLESNTLQSERFAVQLTASVPLKKQLWQQTVQTKIQNQAALLKSVGVDVEPMLYWARSVRSGDPDNYEGRAAAYYWKNLYMGYINDIIFTRGRNEDEPNNLLNYGYAILRAVVARSLVASGLLPTLGIHHHNRYNAFCLADDIMEPYRPFVDKVVLEIVKEGLDYTQLTKEIKAKLLVIPAMDVKIDGKSSPLMIATQRTTASLYNCFNGASRKMLYPTFS
>NZ_CP041345.1|WP_173073260.1|994886_995519_+|hypothetical-protein
MPNSRDIPLEHGCYYHIFNRGINGTPLFYVPDNYLHFLRLYDKYISPIAYTFAWCLMGNHFHLLVRIKEENEVIVTSLPNPVRVLNHVWVSSNKTLKSPHLYFSNLFNSYAQAINKQQHRTGSLFERPFHRLKISSEEYLQNLVVYIHQNPTHHGFTNDFRNYPWTSYGSIISTKPTKVERETVLEWFNGKENFIEVHRKIVDLDIIHDH
>NZ_CP041345.1|WP_173073258.1|991109_994847_+|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MKRILGLDLGSASIGWALIRENEINGNVNREILGLGCRIIPYEGTEGKDFEKGSGESRNAIRTQMRTMRKGYDRYQLRRKYLVQELIKHNMYPSDELKGLPKIQLWELRNRAATERVSLTELGRILLWLNQKRGYKSSRSDSNLDKKDTEYVATVKSRHQLIKEQNLTIGQYFYKQLQNDQFFRVKEKVFPREAYIEEFDTICNEQKKHYPNILTQELISKIRNEIIYYQRPLKSQKGLVSVCEFEGFWRKGPDGKEYFVGPKVAPRSSPIFQYAKIWENINNIKIENKQGNNIEITLEQKRALFEHLDNNEKLTTTDIVRILGLKKNECFFNKQLAKGIVGNATKCAILNCFDEAHKYAHLVKFELDIIETSKKTYLYDNTTGEVINEKTVKYIHPKIEKEPLFVLWHTIYSISDQDECSRVLQDKFGIEKEIADKLASIDFTKHGFGNKSTKTLRKILPYLMEGDKYSEAMCYAGYNHSNSLTKDENLKRELQEKLKPIPKNSLRQPIVEKILNQMVNVVNAIIDKYGKPDEIRIELARELKQSKEERNETYLNITKRERENEQIAKKLQEFGLRATRNNILKWRLYEEMDNEDKKLNAICIYCGQPISLVEAIKGADVDIEHIIPKSKLFDDSQSNKTLAHRHCNTGKGDLTAYDFMKSKPTELFNAYLERVAKLYANKVISKAKRDKLLMTESKIPNNFIDRQLRESQYIAKKAREILQTISHNVWTTSGSVTAELRRLWGWDDVTMNLQFNKYKELGLTSFVEWESEHGKSKHSKEVITGWSKRDDHRHHAVDALVIACTKQGYIQRFNTLNSSRTKQDLIADVEKKSLEFKEKLSLLEKYIVSEQPFTVKEVEEKVAEILVSFKAGKKVAVTGKRKVGKKGNKKVVQTGIIIPRGALHEESVYGKIKTAVHKPIKYAFENPDLIVIPKIKKLVEERLSKYENVKDAIASLKKEPLFIDKNKQVLLKYASCYSSDYVIKYPVDINFNKVDKVVDGRIKQILQARLNKFNGKHKEAFKDMQRGDKVIKWYEDEGLPVPIKTVRCYTGLSAVVPVKKDENGNNIGFVKPGNNHHIAIYTDSEGNKHEHVCTFWHAVERKKFGLPVIIKNTNEVWDKIQQKPLGTYPEEFLEKLPLPNLTLEVSMQQNEMFILGMAPEEISNCLDNKDYRAISEKLYRVQKLSMKNYVFRHHVETQLIDNEASKKSKRYYLIQSLGALFNLNPVKVKIDCIGNIIAWNNTDGV
>NZ_CP041345.1|WP_173073256.1|990152_990758_-|LemA-family-protein
MNISKKWIVIAIVAAVVLLLYSSIKGTYNNMVTKDENVKAQWGNVENVYQRRLDLIPNLVNTVKGYANFEQQTLTQVIEARAKATSVNINPDKLDAQSLKQFQSAQGELSSALSRLMVVVERYPDLKANQNFLDLQAQLEGTENRIAVERRKFNEMVKDYNAYIRKFPKNIWASLFGFEKKAYFEAEAGAEKAPKVDFGTN
>NZ_CP041345.1|WP_173073254.1|989587_990028_-|TPM-domain-containing-protein
MKPKDFFSENQKKLIVSAIEEAEKNTSGEIRVHVEWECKLDNPLDRAAQVFAMLKMHKTKLRNGVLFYLSLNDHKFAILGDAGINSKVPENFWDNIKEAMLAEFKEDRLAEGLVKGIKMAGEQLSTHFPYNAKTDINELSDDISFG
>NZ_CP041345.1|WP_173073252.1|988731_989505_-|TPM-domain-containing-protein
MKRFFYTILSILTILGPLKAQDIPDPMSPPRLVNDFAGVLNREETLVLEQKLRAYHDSTSTQIYVVTVPTLNGYDPADYAFQLGEKWGVGQKGKNNGIVILIKPKIGNERGQAFVATGYGMEEVIPDAVARRIVDNEMIPYFKQNRYYKGINAAVDVIIDLASGLYSADEYYKGDSPIPGIIFLILFFGFIFLSGRRGARVRGGTFASNLPFWLLLGSMGGGRGSSFSDFSSGSGSFGGFSGGGGGSFGGGGAGGSW
>NZ_CP041345.1|WP_173073249.1|988115_988607_+|hypothetical-protein
MKNLKVLVIVGFLLPLFSSCDSLVNDETTNDSLYVKFINDSASLYTITTIEIRNRGAVDGSQEPIGTWSSNVLQAGQKLVPGESTYFTLKLPNGEWAEYRLGVDGGTGNEVMLYDQPNYNGFRDLPITHWGSDERTVSVAITYDETTNTISVTGWSDWSGIED
>NZ_CP041345.1|WP_173073247.1|987134_987905_+|hypothetical-protein
MAKEKINPAEKNAELTIEEKLRFLFKLQQVDSKIDKIKLLRGELPLEVEDLEDEIEGLTTRVENLKNDIKELESQINQKKIEIKDAEALIKKYEEQQKNVRNNREYDSLTKEIEYQTLEIELCNKRIKEYTQQIKEKNLLIEQTEKQLEERSKDLEQKKQELESITSETQKEENELIQLSEEYSMNIEPRLLTAYKRIRANARNGLAVVTVQRDACGGCFNKIPPQRQLDIKMHKKVIVCEYCGRILVDDSLQDEE
>NZ_CP041345.1|WP_173073245.1|986036_987131_+|Nif3-like-dinuclear-metal-center-hexameric-protein
MKIGDIVSILEGFAPLALQEDYDNSGLIVGSKDSEVDKILLSIDVTPEVVREAISKGANLIIAHHPIVFRGLKRFNGSNYVERVVLDAIKNDIAIYASHTNIDSVEGGVSYRIAQRLGLEDVKILRPINGNLVKLVTFVPNDFAQKVRDAIFSAGAGVIGNYDSCSYNVNGFGSFRANETANPFVGQKGEIHFEPEVRVETIVPRHLLKNCISAMLNAHPYEEVAYDVYPIELPYPKAGLGAVGVLPKPVEFDKFLLQVKQKFNAKCVRFTNPVSDSVSKVAICGGSGIELLRDAIASGAQVFITADVKYHQFFDAENRISIVDIGHFESEQFTVDIFYDLLTKKLSNFAILKSEVNTNPINYI
>NZ_CP041345.1|WP_173073266.1|998232_999369_+|ATP-binding-protein
MAKVKEINPFLVNSYISKEYFCDRNNELNILLRNVQSNVNTTLISPRRLGKTGLIFRFFELLREGSDYGTVYVDIYSSRNLADFIKLLTAAIINRFPERTPVGKRFLKLIKGLRPTFSFDAITGTPQVQFSYQSESDKEYTLLQLLTFINEQPKPVVVALDEFQQIAHYPEKNVEAILRTYTQQFNNVCFIFSGSRRHTLMDIFANAKRPFYSSTRFMNLEAIERGAYRNFIREKFEQGKRTIDDESIDYVLEWTKGYTFYTQSLCNRLFSYRKINLDTVKTECLALLKENEPVYLQYRNLMTSKQWDFLLALAKEESVLQIYSKEFLLKHQLGTPSSIRRLLHSLLEKEMVLEAISSTGSNYSVYDVFLMRWMQRTY
>NZ_CP041345.1|WP_173073268.1|999829_1001845_+|urocanate-hydratase
MTLEEFRKDILQGIPDELPAPKPWDPSVNHAPKRKKILTTEEKKLAVKNALRYFPPKHHAVLAEEFYKELEEYGRIYMYRFRPDYKIYARSIHDFPHKSVQAASIMLMLSNNLDYAVAQHPHELITYGGNGAVFQNWAQYRLTMKYLAEMTDEQTLVLYSGHPMGLFPSHPDAPRVVVTNGMMIPNYSSKDDWERYNALGVTQYGQMTAGSFMYIGPQGIVHGTTITVMNAGRKQMKPGETDLRGKIFVSSGLGGMSGAQPKAAVVAGMVGVIAEINPKAVEVRHGQKWVDEVYTSLDELIPRIRQASASKEAVSLAYQGNIVDLWERLVEEDIHVDLGSDQTSLHNPFAGGYYPVGLSFEESNRMMAEQPELFKEKVYESLRRHVKAINALTAKGMYFFDYGNAFLLESSRAGADILKPNGDFRYPSYVQDIMGPMFFDYGFGPFRWVCTSSDPKDLEVTDSIALEVLEEIAKTAPTEIMGQLQDNIHWIREAGRNNLVVGSQARILYADAEGRIKIAAAFNKAIREGRISAPVVLGRDHHDVSGTDSPYRETSNIYDGSRFTADMAIQNVIGDAFRGATWVSIHNGGGVGWGEVINGGFGMTLDGSDAADRRLHMMLHWDVNNGIARRSWARNSGAMFAIKREMERTPLLKVTLPNIADDSLIDQVVKG
>NZ_CP041345.1|WP_173073270.1|1001873_1002278_+|hypothetical-protein
MKKLVKTIAFALLGITLLGSSCDKYEQGEGVTGVWLCREYYSGSKYRTYNVSIDRYTQLDSNTYVVYNMYNLGLNVETYIHLSDTVFSIIGTNSDMYYFTGKGTWHKAAQVIEWEYSVSGQVSDPYVNAVFERP
>NZ_CP041345.1|WP_173073272.1|1002274_1002604_-|thioredoxin-family-protein
MVKVIQTETDLSSALSEPATAIYFNSDACGVCHVMLPQLEQIVGTEFPKMNIYVVNANETPEICGKFSVFTFPTVLIFFEGKESLRMARNINLATFKQAVARPYSILFD
>NZ_CP041345.1|WP_173073274.1|1002597_1002984_-|CoA-binding-protein
MTSNEFLPKTLVLGASLKPERYSNLAIRRLRKHGIEVIAIGTRSGMVEDVKIQTEPIRVDDIHTITLYLGPQNQPPYYDYILGLRPKRIIFNPGTENPELVKLARQNGINTVEGCTLVMLSNGIYYEW
>NZ_CP041345.1|WP_173073276.1|1002988_1003468_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MEFRVGFGYDVHQLKEGIPFWLGGIKIEHTKGSLGHSDGDALIHAICDALLGAANLGDIGLHFPDTDPTLKGIDSKLLLKKCVELIKKEGYGIGNIDTTICLQKPKVKELIPKMRESLAEVMGIDQSQVSIKATTTEKLGFVGKEKGLAAYAVVLIKKI
>NZ_CP041345.1|WP_173073278.1|1003471_1004659_-|type-IX-secretion-system-outer-membrane-channel-protein-PorV
MLKKIFGISLLFLLGFQPIIKAQFDSTLSLTGGLNALRIAVPFLTIAPDSRSAAMGDAGVASIPDVNSQHWNPAKFPFVEGKKWGVGFSYTPWLRNLVNDINLTHLTGFYQIDKLQTISGSLLYFSMGEITFRDNNNTYIQAFNPNEFAIDFGYSRKFSDYISGAMVFRYIRSDLTGNFTTTGTGAGKPGTSFAADLAVYYQHPISLSGKNGQMALGANISNIGTKLSYNEDPQKEFIPINMRVGGRISLDIDQYNSFSFLLDLNKLLVPTPPIYNTNGDIVKGMDPNVSVVQGMIQSFYDAPGGLSEELDEIYIATGIEYWYAKQFAIRAGYFHESQNKGNRKYITLGAGLRYNIFNIDFSYLIATGGFNSPMANTLRFSIAVEFSSSNKRNKN
>NZ_CP041345.1|WP_173073280.1|1004819_1008314_-|type-IX-secretion-system-sortase-PorU
MRTVFIIILLTIFQNPLFTRDFSASAANKHFYSFFPYENSNQLSPPANSTKNNIILNNPAANSPLKSSVLSNGKWYKFGVKKSGIYKISYTELTQLGLDNLDNISVWGIGGKALPLMNNEKSYDDIQPIPILIYKGTDNVFNQGDYILFYAEGPRTLRYDGNFNAWKWDEHLYSKSIFYFLTTSQTQVQIDSDSPPSTSENYSTNEFDQVTTFEKNDTNLVKSGREWFGEIFDIQTKYSYSIETPEIVENSTYKVWARMAARSSASSTFSISFNGQSNLISFSPVPISDPLANKVSVSEQVFTGNINDQAFKIELTYNKPNTGSVGFLDFISVQTRHALKYNSEQLTFRDFSSVGNGNVSKFIISNANSALQIWDVSNINFTKRIPISFSSGNASFKVATDSLRTFIGFEPDMAYSIEAFTPVENQDIKGNGFYEYFIVTHPLFKEYAEDLAQTHREKSNLSVIVYTTEEVYNEFSSGTPDVSAIRNMIRYFYRNASSDADKPKYLLLFGDGSFDNLSDSPNNTNFIPTYQSTRSINSVSSFVSDDFFGLLDDDEGESTGFLDIGIGRLPVSTTEQAADVVDKIKRYINNDDIDDWQSKMVFIGDDEDGNIHMNDANTLAEYIETNHPGYNVQKIFFDAYQQENTSAGQRYPDVTKDINDAVNRGALLVNYTGHGNERWLSHEKVLMLNDVLSWQNKNRLPLFVTATCEFSRFDDYHITSTGEWILLYPDGGAVALLSTTRLVYSSPNFTLNYNFIQQILNTDAEGKHYRLGDLVRITKYLSGTGLNKRNFSLLGDPALMLHYPAFKANITDIKKVSTNEEVTTLKSLEKISISGEIVDNTDVRNTSFNGIASVTVFDKESEITTLANDGGNPITFKARTNVVFKGKATVTNGEFSIQFTVPKDINYSIGAGKICVFATDGTLTALGANDTIKVGGIGTPYEFDSEGPAISLYLNDEKFMNNGISGPNPKLLVVLSDPNGINTTGIGIGHDLTATILYPDGSTSYVNLNDFYSATLDDYTQGTATYQLSNLVPGSYTVTVKAWDTFNNSSKSTLSFRVVDDNSLQISNFYCYPNPITDFTNFFFDSNLSSININVRIEIFNLNGAKVAELKKANISPEGFRIGPFSWNGRSYNGSKLPKGVYIGRLTVNSEKGTQNAVTKFVVF
>NZ_CP041345.1|WP_173073282.1|1008423_1009458_+|PorP/SprF-family-type-IX-secretion-system-membrane-protein
MNLKRVRVIIVIGLVIIFSDLRGQDPTFSQVFFNPTMLNPAYAGASKDMRLGIIYRNQWTMINMPYSTFGVSFDRTFDFGPKWRRGYRYRRARFSNKAGFGINVVSDIEGKGVFSRNTMDLIYSYGFQPTFNSHIRFGLQTSLLFRTRNYSSLVFPDMVDPSGDVLGNPDVVGYTSWNYDIGLGLAGDIENFYGGFAVHHLLQPVEARFTGGRAYIPRKYTFHIGADFNLLKWRRFKEVLLFSPNIIYIQQLDFNQLNIGFYLSKNWIVAGLWLRENLKLNSHSFIITLGYSDYMFRIGYSYDFSIMQHGLRGLPTSSHEVTLGWNFEYKRRRKKFRYIKCPKF
>NZ_CP041345.1|WP_173073284.1|1009540_1011076_+|SUMF1/EgtB/PvdO-family-nonheme-iron-enzyme
MSLKYKTLFLAAAGIFGLNSCGMFGGGGGGTGNVSEKTGWNYNDPENGGFEVVTDWQPEAGPGLVFIEGGTFIMGRVEQDVMYDWNATPRRVTVTSFYMDETEISNVDWREYVHWIKRVYSEYPNVVKNALPDTLVWRSPLGYNEPFVTDYFRHPAYNDYPVVGVNWLQANDYCSWRTDRVNEQLLVDKGIIEFDLAQKGADVFTTEAYLSGQYEARVKKLLPSLDPEKPEGRHVRFSDGILLPKYRLPTEAEWEFAASGLVGNTYDERMVERRIYPWNGHNVRNPDPKVRGQLMANFVRGRGDYMGLAGNLNDENTFPGPVKSYWPNDYGLYCMAGNVNEWVLDVYRPLTYEDFDEVRPFRGNVFKTPYDKDGNYAKKDSLGRIPYREVTEEEAAERHNYNKAYYINYKDGDVASTLDFRDGATIKEKNSDRMYYQGDAQMKNAGMTTLINDHVRVYKGGSWKDRAYWLSPGARRFLDEKRSTNDLGFRCAMEAVGAQSARKRGERVGAR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP041345_3	3.1\|997059\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997059-997088	30	NC_018878	Bacillus thuringiensis Bt407 plasmid BTB_502p, complete sequence	421590-421619	4	0.867
NZ_CP041345_3	3.1\|997059\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997059-997088	30	NZ_CP009332	Bacillus thuringiensis strain HD1011 plasmid 3, complete sequence	68559-68588	6	0.8
NZ_CP041345_3	3.1\|997059\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997059-997088	30	NZ_CP053977	Bacillus thuringiensis strain FDAARGOS_795 plasmid unnamed1, complete sequence	44204-44233	6	0.8
NZ_CP041345_3	3.10\|997743\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997743-997772	30	NZ_CP045128	Acinetobacter indicus strain XG03 plasmid pXG03-X3, complete sequence	36571-36600	6	0.8
NZ_CP041345_3	3.12\|997895\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997895-997924	30	KJ094027	Listeria phage LP-083-1 contig 1, partial genome	12813-12842	6	0.8
NZ_CP041345_3	3.12\|997895\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997895-997924	30	DQ003641	Listeria phage P35, complete genome	12536-12565	6	0.8
NZ_CP041345_3	3.12\|997895\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997895-997924	30	JN882284	Cronobacter phage vB_CsaM_GAP31, complete genome	133988-134017	6	0.8
NZ_CP041345_3	3.1\|997059\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997059-997088	30	NZ_CP031066	Bacillus sp. SH8-8 plasmid pl193, complete sequence	186627-186656	7	0.767
NZ_CP041345_3	3.1\|997059\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997059-997088	30	NZ_CP031063	Bacillus sp. AR4-2 plasmid pl192, complete sequence	186457-186486	7	0.767
NZ_CP041345_3	3.5\|997363\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997363-997392	30	NZ_CP048041	Alcaligenes faecalis strain MUB14 plasmid pMUB-AF14-2, complete sequence	8326-8355	7	0.767
NZ_CP041345_3	3.6\|997439\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997439-997468	30	MN694210	Marine virus AFVG_250M185, complete genome	55729-55758	7	0.767
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	CP021183	Sphingomonas wittichii DC-6 plasmid pDC02, complete sequence	99237-99266	7	0.767
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NC_023143	Phaeobacter gallaeciensis DSM 26640 plasmid pGal_G40, complete sequence	31850-31879	7	0.767
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP010721	Phaeobacter piscinae strain P18 plasmid pP18_f, complete sequence	30855-30884	7	0.767
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP010594	Phaeobacter gallaeciensis strain P11 plasmid pP11_f, complete sequence	31721-31750	7	0.767
NZ_CP041345_3	3.1\|997059\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997059-997088	30	MT446416	UNVERIFIED: Escherichia virus TH47, complete genome	28377-28406	8	0.733
NZ_CP041345_3	3.1\|997059\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997059-997088	30	MH494197	Escherichia phage CMSTMSU, complete genome	53767-53796	8	0.733
NZ_CP041345_3	3.2\|997135\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997135-997164	30	FM164764	Stygiolobus rod-shaped virus, complete genome	3650-3679	8	0.733
NZ_CP041345_3	3.4\|997287\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997287-997316	30	MH837543	Lactobacillus phage LR2, complete genome	11358-11387	8	0.733
NZ_CP041345_3	3.5\|997363\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997363-997392	30	MN693541	Marine virus AFVG_25M436, complete genome	28139-28168	8	0.733
NZ_CP041345_3	3.6\|997439\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997439-997468	30	NZ_CP017773	Paenibacillus crassostreae strain LPB0068 plasmid pPC03, complete sequence	61230-61259	8	0.733
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP049794	Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence	1632160-1632189	8	0.733
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP049788	Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence	901944-901973	8	0.733
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP022766	Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence	1061009-1061038	8	0.733
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP021763	Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence	1078945-1078974	8	0.733
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP015116	Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence	1254160-1254189	8	0.733
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP049792	Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence	1407321-1407350	8	0.733
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP052069	Ralstonia solanacearum strain FJAT91.F50 plasmid Plas1, complete sequence	979959-979988	8	0.733
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP025986	Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence	1320459-1320488	8	0.733
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP022769	Ralstonia solanacearum strain T60 plasmid unnamed, complete sequence	1068760-1068789	8	0.733
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP022773	Ralstonia solanacearum strain T42 plasmid unnamed, complete sequence	783614-783643	8	0.733
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP022791	Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence	894429-894458	8	0.733
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP009763	Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence	987240-987269	8	0.733
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP022779	Ralstonia solanacearum strain SL3882 plasmid unnamed, complete sequence	1068749-1068778	8	0.733
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP052085	Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence	1074432-1074461	8	0.733
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP052095	Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence	1102071-1102100	8	0.733
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP052087	Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence	1074432-1074461	8	0.733
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP052097	Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence	1102071-1102100	8	0.733
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP052127	Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence	1074432-1074461	8	0.733
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP052089	Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence	1074436-1074465	8	0.733
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP052093	Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence	1102071-1102100	8	0.733
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP052101	Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence	1102071-1102100	8	0.733
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP052099	Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence	1102071-1102100	8	0.733
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP022793	Ralstonia solanacearum strain SL2729 plasmid unnamed, complete sequence	991550-991579	8	0.733
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP022785	Ralstonia solanacearum strain SL3730 plasmid unnamed, complete sequence	972229-972258	8	0.733
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP022787	Ralstonia solanacearum strain SL3300 plasmid unnamed, complete sequence	1020172-1020201	8	0.733
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP022756	Ralstonia solanacearum strain T117 plasmid unnamed, complete sequence	1066328-1066357	8	0.733
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP052131	Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence	1074431-1074460	8	0.733
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP052091	Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence	1102072-1102101	8	0.733
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP016613	Ralstonia solanacearum FJAT-91 plasmid unnamed1, complete sequence	1650956-1650985	8	0.733
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP049790	Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence	1039689-1039718	8	0.733
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP016555	Ralstonia solanacearum FJAT-1458 plasmid plas1, complete sequence	816913-816942	8	0.733
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP016915	Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence	1635174-1635203	8	0.733
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP016905	Ralstonia solanacearum strain KACC 10709 plasmid unnamed1	47342-47371	8	0.733
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP052071	Ralstonia solanacearum strain FJAT454.F1 plasmid Plas1, complete sequence	1180009-1180038	8	0.733
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP022482	Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence	98283-98312	8	0.733
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	CP023015	Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence	1000288-1000317	8	0.733
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP052075	Ralstonia solanacearum strain FJAT448.F1 plasmid Plas1, complete sequence	1179976-1180005	8	0.733
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP052105	Ralstonia solanacearum strain FJAT15252.F1 plasmid Plas1, complete sequence	1178781-1178810	8	0.733
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP052115	Ralstonia solanacearum strain FJAT1463.F50 plasmid Plas1, complete sequence	1178818-1178847	8	0.733
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP052107	Ralstonia solanacearum strain FJAT15249.F50 plasmid Plas1, complete sequence	1178818-1178847	8	0.733
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP022781	Ralstonia solanacearum strain SL3822 plasmid unnamed, complete sequence	975230-975259	8	0.733
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP052117	Ralstonia solanacearum strain FJAT1463.F1 plasmid Plas1, complete sequence	1178807-1178836	8	0.733
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP052129	Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence	1083091-1083120	8	0.733
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP052121	Ralstonia solanacearum strain FJAT1458.F1 plasmid Plas1, complete sequence	1178807-1178836	8	0.733
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP052073	Ralstonia solanacearum strain FJAT448.F50 plasmid Plas1, complete sequence	1179974-1180003	8	0.733
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP052109	Ralstonia solanacearum strain FJAT15249.F1 plasmid Plas1, complete sequence	1178818-1178847	8	0.733
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP052111	Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence	961438-961467	8	0.733
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP052103	Ralstonia solanacearum strain FJAT15252.F50 plasmid Plas1, complete sequence	1178829-1178858	8	0.733
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP052119	Ralstonia solanacearum strain FJAT1458.F50 plasmid Plas1, complete sequence	1178807-1178836	8	0.733
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP052113	Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence	961438-961467	8	0.733
NZ_CP041345_3	3.10\|997743\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997743-997772	30	MN855779	Myoviridae sp. isolate 443, complete genome	36333-36362	8	0.733
NZ_CP041345_3	3.9\|997667\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997667-997696	30	NZ_CP013125	Pseudomonas mendocina S5.2 plasmid pPME5, complete sequence	243626-243655	9	0.7
NZ_CP041345_3	3.10\|997743\|30\|NZ_CP041345\|PILER-CR,CRISPRCasFinder	997743-997772	30	NZ_CP009691	Bacillus mycoides strain ATCC 6462 plasmid pBMX_1, complete sequence	81848-81877	9	0.7

1. spacer 3.1|997059|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NC_018878 (Bacillus thuringiensis Bt407 plasmid BTB_502p, complete sequence) position: , mismatch: 4, identity: 0.867

ttattatactcaattatatatacttgttta	CRISPR spacer
tcaatatactcaattttatatacttgtttt	Protospacer
*.* *********** *************

2. spacer 3.1|997059|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP009332 (Bacillus thuringiensis strain HD1011 plasmid 3, complete sequence) position: , mismatch: 6, identity: 0.8

ttattatactcaattatatatacttgttta	CRISPR spacer
tctctatgctcaattatatatactttttca	Protospacer
*. .***.***************** **.*

3. spacer 3.1|997059|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP053977 (Bacillus thuringiensis strain FDAARGOS_795 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

ttattatactcaattatatatacttgttta	CRISPR spacer
tctctatgctcaattatatatactttttca	Protospacer
*. .***.***************** **.*

4. spacer 3.10|997743|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP045128 (Acinetobacter indicus strain XG03 plasmid pXG03-X3, complete sequence) position: , mismatch: 6, identity: 0.8

aaagatattcttacctgtttcctcagatac	CRISPR spacer
aaacagattcttacctgtttccttatcaac	Protospacer
*** * *****************.*   **

5. spacer 3.12|997895|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to KJ094027 (Listeria phage LP-083-1 contig 1, partial genome) position: , mismatch: 6, identity: 0.8

tcagaggttggaactggaatactgaaagtt	CRISPR spacer
tcaggggttggaactggaataccgaacaca	Protospacer
****.*****************.*** ..

6. spacer 3.12|997895|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to DQ003641 (Listeria phage P35, complete genome) position: , mismatch: 6, identity: 0.8

tcagaggttggaactggaatactgaaagtt	CRISPR spacer
tcaggggttggaactggaataccgaacaca	Protospacer
****.*****************.*** ..

7. spacer 3.12|997895|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to JN882284 (Cronobacter phage vB_CsaM_GAP31, complete genome) position: , mismatch: 6, identity: 0.8

tcagaggttggaactggaatactgaaagtt	CRISPR spacer
tctgaggttggaactggaattctgcatgaa	Protospacer
** ***************** *** * *

8. spacer 3.1|997059|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP031066 (Bacillus sp. SH8-8 plasmid pl193, complete sequence) position: , mismatch: 7, identity: 0.767

ttattatactcaattatatatacttgttta	CRISPR spacer
atattatactccattatatatagcagaata	Protospacer
 ********** ********** . *  **

9. spacer 3.1|997059|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP031063 (Bacillus sp. AR4-2 plasmid pl192, complete sequence) position: , mismatch: 7, identity: 0.767

ttattatactcaattatatatacttgttta	CRISPR spacer
atattatactccattatatatagcagaata	Protospacer
 ********** ********** . *  **

10. spacer 3.5|997363|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP048041 (Alcaligenes faecalis strain MUB14 plasmid pMUB-AF14-2, complete sequence) position: , mismatch: 7, identity: 0.767

agactcattgcatcaata--cgcgcctggtag	CRISPR spacer
ttactcattgcatcaatacccgcgcccgcc--	Protospacer
  ****************  ******.* .

11. spacer 3.6|997439|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to MN694210 (Marine virus AFVG_250M185, complete genome) position: , mismatch: 7, identity: 0.767

ttgcttgctatctcttctaatgtgttctcg	CRISPR spacer
gcggatgctatctcttctattgtgctctct	Protospacer
 .*  ************** ****.****

12. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to CP021183 (Sphingomonas wittichii DC-6 plasmid pDC02, complete sequence) position: , mismatch: 7, identity: 0.767

atctcggctctgcgctatcggcaactatta	CRISPR spacer
atcgcggctctgcgctttcggcagatcgtg	Protospacer
*** ************ ******. *  *.

13. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NC_023143 (Phaeobacter gallaeciensis DSM 26640 plasmid pGal_G40, complete sequence) position: , mismatch: 7, identity: 0.767

atctcggctctgcgctatcggcaactatta-	CRISPR spacer
ttcccggctctgcgatatcggcaa-gatggc	Protospacer
 **.********** *********  ** .

14. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP010721 (Phaeobacter piscinae strain P18 plasmid pP18_f, complete sequence) position: , mismatch: 7, identity: 0.767

atctcggctctgcgctatcggcaactatta-	CRISPR spacer
ttcccggctctgcgatatcggcaa-gatggc	Protospacer
 **.********** *********  ** .

15. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP010594 (Phaeobacter gallaeciensis strain P11 plasmid pP11_f, complete sequence) position: , mismatch: 7, identity: 0.767

atctcggctctgcgctatcggcaactatta-	CRISPR spacer
ttcccggctctgcgatatcggcaa-gatggc	Protospacer
 **.********** *********  ** .

16. spacer 3.1|997059|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to MT446416 (UNVERIFIED: Escherichia virus TH47, complete genome) position: , mismatch: 8, identity: 0.733

ttattatactcaattatatatacttgttta	CRISPR spacer
tcattgtactcaattatatatacaacaaca	Protospacer
*.***.*****************     .*

17. spacer 3.1|997059|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to MH494197 (Escherichia phage CMSTMSU, complete genome) position: , mismatch: 8, identity: 0.733

ttattatactcaattatatatacttgttta	CRISPR spacer
tcattgtactcaattatatatacaacaaca	Protospacer
*.***.*****************     .*

18. spacer 3.2|997135|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to FM164764 (Stygiolobus rod-shaped virus, complete genome) position: , mismatch: 8, identity: 0.733

ttcacccatacatatttaaagaaaaccaga	CRISPR spacer
aatatgaatacatatataaagaaaacaaga	Protospacer
  .*.  ******** ********** ***

19. spacer 3.4|997287|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to MH837543 (Lactobacillus phage LR2, complete genome) position: , mismatch: 8, identity: 0.733

gagagaagatgtaggtagcatcaacgatta	CRISPR spacer
cattgaagatgtaggtaacattaacgaaat	Protospacer
 *  *************.***.*****

20. spacer 3.5|997363|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to MN693541 (Marine virus AFVG_25M436, complete genome) position: , mismatch: 8, identity: 0.733

agactcattgcatcaatacgcgcctggtag	CRISPR spacer
agactcaaggcatcaatacgcgcgcgaagc	Protospacer
*******  ************** .*. .

21. spacer 3.6|997439|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP017773 (Paenibacillus crassostreae strain LPB0068 plasmid pPC03, complete sequence) position: , mismatch: 8, identity: 0.733

ttgcttgctatctcttctaatgtgttctcg	CRISPR spacer
gtatctgcaatctcttctaatgtgtttagg	Protospacer
 *...*** *****************.  *

22. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP049794 (Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

atctcggctctgcgctatcggcaactatta	CRISPR spacer
gattcggcgccgcgctatcggcaactgctg	Protospacer
. .***** *.***************..*.

23. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP049788 (Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

atctcggctctgcgctatcggcaactatta	CRISPR spacer
gattcggcgccgcgctatcggcaactgctg	Protospacer
. .***** *.***************..*.

24. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP022766 (Ralstonia solanacearum strain T78 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

atctcggctctgcgctatcggcaactatta	CRISPR spacer
gattcggcgccgcgctatcggcaactgctg	Protospacer
. .***** *.***************..*.

25. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP021763 (Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

atctcggctctgcgctatcggcaactatta	CRISPR spacer
gattcggcgccgcgctatcggcaactgctg	Protospacer
. .***** *.***************..*.

26. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP015116 (Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

atctcggctctgcgctatcggcaactatta	CRISPR spacer
gattcggcgccgcgctatcggcaactgctg	Protospacer
. .***** *.***************..*.

27. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP049792 (Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

atctcggctctgcgctatcggcaactatta	CRISPR spacer
gattcggcgccgcgctatcggcaactgctg	Protospacer
. .***** *.***************..*.

28. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP052069 (Ralstonia solanacearum strain FJAT91.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

atctcggctctgcgctatcggcaactatta	CRISPR spacer
gattcggcgccgcgctatcggcaactgctg	Protospacer
. .***** *.***************..*.

29. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP025986 (Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence) position: , mismatch: 8, identity: 0.733

atctcggctctgcgctatcggcaactatta	CRISPR spacer
gattcggcgccgcgctatcggcaactgctg	Protospacer
. .***** *.***************..*.

30. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP022769 (Ralstonia solanacearum strain T60 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

atctcggctctgcgctatcggcaactatta	CRISPR spacer
gattcggcgccgcgctatcggcaactgctg	Protospacer
. .***** *.***************..*.

31. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP022773 (Ralstonia solanacearum strain T42 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

atctcggctctgcgctatcggcaactatta	CRISPR spacer
gattcggcgccgcgctatcggcaactgctg	Protospacer
. .***** *.***************..*.

32. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP022791 (Ralstonia solanacearum strain SL3103 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

atctcggctctgcgctatcggcaactatta	CRISPR spacer
gattcggcgccgcgctatcggcaactgctg	Protospacer
. .***** *.***************..*.

33. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP009763 (Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

atctcggctctgcgctatcggcaactatta	CRISPR spacer
gattcggcgccgcgctatcggcaactgctg	Protospacer
. .***** *.***************..*.

34. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP022779 (Ralstonia solanacearum strain SL3882 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

atctcggctctgcgctatcggcaactatta	CRISPR spacer
gattcggcgccgcgctatcggcaactgctg	Protospacer
. .***** *.***************..*.

35. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP052085 (Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

atctcggctctgcgctatcggcaactatta	CRISPR spacer
gattcggcgccgcgctatcggcaactgctg	Protospacer
. .***** *.***************..*.

36. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP052095 (Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

atctcggctctgcgctatcggcaactatta	CRISPR spacer
gattcggcgccgcgctatcggcaactgctg	Protospacer
. .***** *.***************..*.

37. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP052087 (Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

atctcggctctgcgctatcggcaactatta	CRISPR spacer
gattcggcgccgcgctatcggcaactgctg	Protospacer
. .***** *.***************..*.

38. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP052097 (Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

atctcggctctgcgctatcggcaactatta	CRISPR spacer
gattcggcgccgcgctatcggcaactgctg	Protospacer
. .***** *.***************..*.

39. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP052127 (Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

atctcggctctgcgctatcggcaactatta	CRISPR spacer
gattcggcgccgcgctatcggcaactgctg	Protospacer
. .***** *.***************..*.

40. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP052089 (Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

atctcggctctgcgctatcggcaactatta	CRISPR spacer
gattcggcgccgcgctatcggcaactgctg	Protospacer
. .***** *.***************..*.

41. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP052093 (Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

atctcggctctgcgctatcggcaactatta	CRISPR spacer
gattcggcgccgcgctatcggcaactgctg	Protospacer
. .***** *.***************..*.

42. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP052101 (Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

atctcggctctgcgctatcggcaactatta	CRISPR spacer
gattcggcgccgcgctatcggcaactgctg	Protospacer
. .***** *.***************..*.

43. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP052099 (Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

atctcggctctgcgctatcggcaactatta	CRISPR spacer
gattcggcgccgcgctatcggcaactgctg	Protospacer
. .***** *.***************..*.

44. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP022793 (Ralstonia solanacearum strain SL2729 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

atctcggctctgcgctatcggcaactatta	CRISPR spacer
gattcggcgccgcgctatcggcaactgctg	Protospacer
. .***** *.***************..*.

45. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP022785 (Ralstonia solanacearum strain SL3730 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

atctcggctctgcgctatcggcaactatta	CRISPR spacer
gattcggcgccgcgctatcggcaactgctg	Protospacer
. .***** *.***************..*.

46. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP022787 (Ralstonia solanacearum strain SL3300 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

atctcggctctgcgctatcggcaactatta	CRISPR spacer
gattcggcgccgcgctatcggcaactgctg	Protospacer
. .***** *.***************..*.

47. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP022756 (Ralstonia solanacearum strain T117 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

atctcggctctgcgctatcggcaactatta	CRISPR spacer
gattcggcgccgcgctatcggcaactgctg	Protospacer
. .***** *.***************..*.

48. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP052131 (Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

atctcggctctgcgctatcggcaactatta	CRISPR spacer
gattcggcgccgcgctatcggcaactgctg	Protospacer
. .***** *.***************..*.

49. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP052091 (Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

atctcggctctgcgctatcggcaactatta	CRISPR spacer
gattcggcgccgcgctatcggcaactgctg	Protospacer
. .***** *.***************..*.

50. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP016613 (Ralstonia solanacearum FJAT-91 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

atctcggctctgcgctatcggcaactatta	CRISPR spacer
gattcggcgccgcgctatcggcaactgctg	Protospacer
. .***** *.***************..*.

51. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP049790 (Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

atctcggctctgcgctatcggcaactatta	CRISPR spacer
gattcggcgccgcgctatcggcaactgctg	Protospacer
. .***** *.***************..*.

52. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP016555 (Ralstonia solanacearum FJAT-1458 plasmid plas1, complete sequence) position: , mismatch: 8, identity: 0.733

atctcggctctgcgctatcggcaactatta	CRISPR spacer
gattcggcgccgcgctatcggcaactgctg	Protospacer
. .***** *.***************..*.

53. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP016915 (Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

atctcggctctgcgctatcggcaactatta	CRISPR spacer
gattcggcgccgcgctatcggcaactgctg	Protospacer
. .***** *.***************..*.

54. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP016905 (Ralstonia solanacearum strain KACC 10709 plasmid unnamed1) position: , mismatch: 8, identity: 0.733

atctcggctctgcgctatcggcaactatta	CRISPR spacer
gattcggcgccgcgctatcggcaactgctg	Protospacer
. .***** *.***************..*.

55. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP052071 (Ralstonia solanacearum strain FJAT454.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

atctcggctctgcgctatcggcaactatta	CRISPR spacer
gattcggcgccgcgctatcggcaactgctg	Protospacer
. .***** *.***************..*.

56. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP022482 (Ralstonia solanacearum strain HA4-1 plasmid HA4-1MP, complete sequence) position: , mismatch: 8, identity: 0.733

atctcggctctgcgctatcggcaactatta	CRISPR spacer
gattcggcgccgcgctatcggcaactgctg	Protospacer
. .***** *.***************..*.

57. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to CP023015 (Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

atctcggctctgcgctatcggcaactatta	CRISPR spacer
gattcggcgccgcgctatcggcaactgctg	Protospacer
. .***** *.***************..*.

58. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP052075 (Ralstonia solanacearum strain FJAT448.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

atctcggctctgcgctatcggcaactatta	CRISPR spacer
gattcggcgccgcgctatcggcaactgctg	Protospacer
. .***** *.***************..*.

59. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP052105 (Ralstonia solanacearum strain FJAT15252.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

atctcggctctgcgctatcggcaactatta	CRISPR spacer
gattcggcgccgcgctatcggcaactgctg	Protospacer
. .***** *.***************..*.

60. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP052115 (Ralstonia solanacearum strain FJAT1463.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

atctcggctctgcgctatcggcaactatta	CRISPR spacer
gattcggcgccgcgctatcggcaactgctg	Protospacer
. .***** *.***************..*.

61. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP052107 (Ralstonia solanacearum strain FJAT15249.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

atctcggctctgcgctatcggcaactatta	CRISPR spacer
gattcggcgccgcgctatcggcaactgctg	Protospacer
. .***** *.***************..*.

62. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP022781 (Ralstonia solanacearum strain SL3822 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

atctcggctctgcgctatcggcaactatta	CRISPR spacer
gattcggcgccgcgctatcggcaactgctg	Protospacer
. .***** *.***************..*.

63. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP052117 (Ralstonia solanacearum strain FJAT1463.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

atctcggctctgcgctatcggcaactatta	CRISPR spacer
gattcggcgccgcgctatcggcaactgctg	Protospacer
. .***** *.***************..*.

64. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP052129 (Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

atctcggctctgcgctatcggcaactatta	CRISPR spacer
gattcggcgccgcgctatcggcaactgctg	Protospacer
. .***** *.***************..*.

65. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP052121 (Ralstonia solanacearum strain FJAT1458.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

atctcggctctgcgctatcggcaactatta	CRISPR spacer
gattcggcgccgcgctatcggcaactgctg	Protospacer
. .***** *.***************..*.

66. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP052073 (Ralstonia solanacearum strain FJAT448.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

atctcggctctgcgctatcggcaactatta	CRISPR spacer
gattcggcgccgcgctatcggcaactgctg	Protospacer
. .***** *.***************..*.

67. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP052109 (Ralstonia solanacearum strain FJAT15249.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

atctcggctctgcgctatcggcaactatta	CRISPR spacer
gattcggcgccgcgctatcggcaactgctg	Protospacer
. .***** *.***************..*.

68. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP052111 (Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

atctcggctctgcgctatcggcaactatta	CRISPR spacer
gattcggcgccgcgctatcggcaactgctg	Protospacer
. .***** *.***************..*.

69. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP052103 (Ralstonia solanacearum strain FJAT15252.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

atctcggctctgcgctatcggcaactatta	CRISPR spacer
gattcggcgccgcgctatcggcaactgctg	Protospacer
. .***** *.***************..*.

70. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP052119 (Ralstonia solanacearum strain FJAT1458.F50 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

atctcggctctgcgctatcggcaactatta	CRISPR spacer
gattcggcgccgcgctatcggcaactgctg	Protospacer
. .***** *.***************..*.

71. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP052113 (Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence) position: , mismatch: 8, identity: 0.733

atctcggctctgcgctatcggcaactatta	CRISPR spacer
gattcggcgccgcgctatcggcaactgctg	Protospacer
. .***** *.***************..*.

72. spacer 3.10|997743|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to MN855779 (Myoviridae sp. isolate 443, complete genome) position: , mismatch: 8, identity: 0.733

aaagatattcttacctgtttcctcagatac	CRISPR spacer
tgcaggattcttacctgcttcctcagatat	Protospacer
 . .. ***********.***********.

73. spacer 3.9|997667|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP013125 (Pseudomonas mendocina S5.2 plasmid pPME5, complete sequence) position: , mismatch: 9, identity: 0.7

atctcggctctgcgctatcggcaactatta	CRISPR spacer
cactgggctcagcgctatcggcaacccggt	Protospacer
  ** ***** **************.

74. spacer 3.10|997743|30|NZ_CP041345|PILER-CR,CRISPRCasFinder matches to NZ_CP009691 (Bacillus mycoides strain ATCC 6462 plasmid pBMX_1, complete sequence) position: , mismatch: 9, identity: 0.7

aaagatattcttacctgtttcctcagatac	CRISPR spacer
cgctatattcttaactgtttccgcagaatg	Protospacer
 .  ********* ******** ****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1875491 : 1882853

Escherichia_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_173074702.1\|1875491_1876442_+	SDR family oxidoreductase	A0A2K9KZK0	Tupanvirus	4.5e-77	48.8
WP_173074704.1\|1876511_1877387_+	glucose-1-phosphate thymidylyltransferase RfbA	K7QKA7	Escherichia_phage	8.4e-102	59.2
WP_173074706.1\|1877393_1877960_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	7.4e-43	50.0
WP_173074708.1\|1877966_1878818_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.4e-40	39.7
WP_173074710.1\|1878844_1880578_+	phospho-sugar mutase	A0A1X9I671	Streptococcus_phage	3.1e-124	43.4
WP_173074712.1\|1880586_1881003_+	YjbQ family protein	NA	NA	NA	NA
WP_173074714.1\|1881071_1882853_-	aminopeptidase P family protein	A0A0P0I8D7	Acinetobacter_phage	8.4e-141	41.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP041345

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection