CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
NZ_CP053982	Bacillus thuringiensis strain FDAARGOS_793 plasmid unnamed1, complete sequence	0 crisprs	NA	1
NZ_CP053983	Bacillus thuringiensis strain FDAARGOS_793 plasmid unnamed2	0 crisprs	NA	0
NZ_CP053981	Bacillus thuringiensis strain FDAARGOS_793 chromosome, complete genome	4 crisprs	cas14j,DEDDh,c2c9_V-U4,cas3,csa3,WYL,cas14k,DinG,RT	4

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1465 : 46519

Bacillus_phage(57.78%)

plate,terminase,tail,portal,capsid

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000128985.1\|1465_2056_-	DUF3967 domain-containing protein	A0A1Z1LZN4	Bacillus_phage	2.3e-10	35.7
WP_000473803.1\|2166_2430_-	hypothetical protein	NA	NA	NA	NA
WP_000272608.1\|2925_4191_+	Y-family DNA polymerase	O64031	Bacillus_phage	1.7e-108	48.6
WP_001057807.1\|4187_4529_+	YolD-like family protein	NA	NA	NA	NA
WP_000249931.1\|4698_5607_+	WXG100 family type VII secretion target	A0A2H4J389	uncultured_Caudovirales_phage	4.3e-16	41.9
WP_001173690.1\|5619_5973_+	hypothetical protein	NA	NA	NA	NA
WP_001266380.1\|6169_6931_-	N-acetylmuramoyl-L-alanine amidase	A0A1B1P7G0	Bacillus_phage	1.3e-122	84.2
WP_001131587.1\|6930_7155_-	hypothetical protein	A0A1B2APX7	Phage_Wrath	5.2e-24	79.4
WP_000151216.1\|7157_7439_-	hypothetical protein	D2XR31	Bacillus_phage	4.8e-35	84.9
WP_001152008.1\|7480_8149_-	hypothetical protein	A0A2H4J9X9	uncultured_Caudovirales_phage	7.9e-52	74.8
WP_042329765.1\|8163_9753_-\|plate	BppU family phage baseplate upper protein	D2XPZ7	Bacillus_virus	2.9e-76	41.4
WP_000222205.1\|9813_10080_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_000289463.1\|10089_11937_-\|tail	phage tail protein	A0A2P1JTV8	Anoxybacillus_phage	2.9e-128	44.2
WP_000383069.1\|11948_12830_-\|tail	phage tail family protein	A0A2P1JTW0	Anoxybacillus_phage	1.7e-73	47.6
WP_000235292.1\|12829_15556_-	hypothetical protein	B5LPS3	Bacillus_virus	9.4e-75	46.4
WP_001229383.1\|15571_15832_-	hypothetical protein	NA	NA	NA	NA
WP_001210040.1\|15909_16326_-	hypothetical protein	NA	NA	NA	NA
WP_000852141.1\|16391_16856_-\|tail	phage major tail protein, TP901-1 family	NA	NA	NA	NA
WP_000273213.1\|16870_17272_-	hypothetical protein	NA	NA	NA	NA
WP_000168162.1\|17274_17766_-	HK97 gp10 family phage protein	A0A249XXA4	Clostridium_phage	1.1e-39	50.9
WP_000056960.1\|17750_18143_-	DUF3599 family protein	NA	NA	NA	NA
WP_001128458.1\|18142_18532_-	DUF3199 family protein	A0A1B1P7D6	Bacillus_phage	3.2e-21	40.8
WP_001131834.1\|18537_18720_-	hypothetical protein	NA	NA	NA	NA
WP_001059035.1\|18736_19654_-\|capsid	phage major capsid protein	A5GYL9	Lactococcus_phage	1.2e-45	34.8
WP_000746379.1\|19669_20857_-	hypothetical protein	A0A1B1P7E4	Bacillus_phage	2.8e-76	46.5
WP_001169137.1\|20903_21830_-	hypothetical protein	A0A1B1P7D7	Bacillus_phage	4.5e-45	35.3
WP_000182666.1\|21816_23355_-\|portal	phage portal protein	A0A1B1P7C8	Bacillus_phage	1.3e-94	38.6
WP_042513780.1\|23354_24671_-\|terminase	PBSX family phage terminase large subunit	A0A0S2MVC1	Bacillus_phage	2.5e-182	71.0
WP_000113786.1\|24642_25572_-\|terminase	terminase small subunit	A0A0S2MVB6	Bacillus_phage	8.2e-132	91.1
WP_000504255.1\|26128_26953_-	GIY-YIG nuclease family protein	D2XPX7	Bacillus_virus	1.2e-73	60.6
WP_000583549.1\|26965_27550_-	recombinase family protein	M9Q1K0	Clostridium_phage	6.5e-26	47.2
WP_000393224.1\|28052_28283_-	hypothetical protein	NA	NA	NA	NA
WP_000432046.1\|28371_28698_-	hypothetical protein	NA	NA	NA	NA
WP_042329745.1\|29773_30160_-	ArpU family transcriptional regulator	D2XQ27	Bacillus_virus	7.5e-63	97.7
WP_000529718.1\|30297_30927_-	Holliday junction resolvase RecU	A0A2H4J3A4	uncultured_Caudovirales_phage	5.9e-49	60.8
WP_001114345.1\|30929_31109_-	hypothetical protein	NA	NA	NA	NA
WP_001292053.1\|31133_31322_-	hypothetical protein	NA	NA	NA	NA
WP_000784801.1\|31324_31522_-	hypothetical protein	NA	NA	NA	NA
WP_000455713.1\|32918_33518_-	hypothetical protein	A0A0S2SXN5	Bacillus_phage	1.9e-44	45.6
WP_011731650.1\|33558_33768_-	hypothetical protein	I1TLG8	Bacillus_phage	2.0e-33	95.7
WP_000932236.1\|33805_34303_-	dUTP diphosphatase	S6AVW3	Thermus_phage	1.0e-16	31.1
WP_000712437.1\|34307_34484_-	hypothetical protein	NA	NA	NA	NA
WP_000201869.1\|34494_34776_-	glutaredoxin family protein	M4W5X4	Bacillus_phage	1.1e-15	56.3
WP_000434347.1\|35078_35219_-	Fur-regulated basic protein FbpA	A0A1B1P8B6	Bacillus_phage	3.8e-17	93.5
WP_000219525.1\|35227_35941_-	hypothetical protein	B5LPM7	Bacillus_virus	4.1e-38	51.4
WP_000811957.1\|35952_36216_-	hypothetical protein	A0A1B1P7U6	Bacillus_phage	7.2e-25	64.4
WP_011731652.1\|36212_36500_-	helix-turn-helix domain containing protein	A0A1B1P7W1	Bacillus_phage	6.4e-35	80.0
WP_000332351.1\|36414_36678_-	hypothetical protein	A0A1B1P8D7	Bacillus_phage	3.8e-18	70.7
WP_041184387.1\|36690_37572_-	ATP-binding protein	Q2I8C8	Bacillus_phage	1.9e-85	55.2
WP_000073890.1\|37522_38338_-	conserved phage C-terminal domain-containing protein	A0A1W6JP67	Staphylococcus_phage	1.4e-58	54.5
WP_000487938.1\|38338_38560_-	hypothetical protein	NA	NA	NA	NA
WP_001043060.1\|38759_39434_-	ERF family protein	A0A0M3ULL1	Bacillus_phage	2.5e-61	57.9
WP_000780697.1\|39430_39913_-	siphovirus Gp157 family protein	E5DV79	Deep-sea_thermophilic_phage	9.4e-39	51.2
WP_000655888.1\|39925_40075_-	hypothetical protein	A0A0M5M3T1	Bacillus_phage	1.8e-09	72.1
WP_001006520.1\|40532_41303_-	phage antirepressor Ant	A0A2H4PQV4	Staphylococcus_phage	4.2e-57	45.1
WP_080011779.1\|41342_41564_-	helix-turn-helix transcriptional regulator	Q0H243	Geobacillus_phage	7.4e-07	50.0
WP_000578778.1\|41695_42046_+	helix-turn-helix transcriptional regulator	A0A0U3SD25	Bacillus_phage	6.9e-23	49.6
WP_000721629.1\|42366_42516_-	hypothetical protein	NA	NA	NA	NA
WP_001189353.1\|42555_43704_-	hypothetical protein	A0A0S2MVK2	Bacillus_phage	1.8e-51	33.8
WP_000859163.1\|44200_44548_+	helix-turn-helix transcriptional regulator	A0A1B1P888	Bacillus_phage	8.3e-21	46.3
WP_000448836.1\|44752_45457_+	DUF4352 domain-containing protein	A0A1B1P898	Bacillus_phage	2.7e-58	90.4
WP_000831284.1\|45476_45821_+	DUF4064 domain-containing protein	A0A0S2MVJ2	Bacillus_phage	2.0e-43	80.7
WP_000451516.1\|45955_46519_+	DUF4352 domain-containing protein	A0A0S2MVG4	Bacillus_phage	1.6e-37	50.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP053981

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP053981_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053981_1

94270-94377

Orphan

Consensus_repeat	Method
TATATCAGCGATTTTTTGAATATATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP053981_1

>merge|NZ_CP053981|1|94270-94377|CRISPRCasFinder
TATATCAGCGATTTTTTGAATATATCAACCGCAACTCGAAATATATCAGCGATTTTTTAAATATATCGACCACAACTCGAAATATATCAGCGATTTTTTGAATATATC

>NZ_CP053981|1|1|94270-94377|CRISPRCasFinder
TATATCAGCGATTTTTTGAATATATC	AACCGCAACTCGAAATATATCAGCGATTTTTTAAATATATCGACCACAACTCGAAA
TATATCAGCGATTTTTTGAATATATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053981.1\|WP_000023843.1\|87666_89121_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP053981.1\|WP_001982862.1\|86975_87665_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP053981.1\|WP_000389138.1\|91958_92255_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053981.1\|WP_000757116.1\|97894_98329_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053981.1\|WP_000219465.1\|99772_101083_-\|UDP-N-acetylmuramate--L-alanine-ligase	unknown	unknown	gnl\|CDD\|234757
NZ_CP053981.1\|WP_000738004.1\|94581_95598_-\|CamS-family-sex-pheromone-protein	unknown	unknown	gnl\|CDD\|227188
NZ_CP053981.1\|WP_012680356.1\|92574_92937_+\|DUF4288-domain-containing-protein	unknown	unknown	gnl\|CDD\|379479
NZ_CP053981.1\|WP_001103285.1\|92972_93971_-\|catabolite-control-protein-A	unknown	unknown	gnl\|CDD\|130546
NZ_CP053981.1\|WP_000267006.1\|91085_91484_+\|large-conductance-mechanosensitive-channel-protein-MscL	unknown	unknown	gnl\|CDD\|184416
NZ_CP053981.1\|WP_000878354.1\|98344_98527_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053981.1\|WP_000475171.1\|89270_89951_+\|ankyrin-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|293786
NZ_CP053981.1\|WP_000654739.1\|96741_97857_+\|aminopeptidase	unknown	unknown	gnl\|CDD\|225191
NZ_CP053981.1\|WP_000042825.1\|90030_90957_+\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP053981.1\|WP_000494671.1\|99019_99574_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
NZ_CP053981.1\|WP_000637893.1\|92336_92573_+\|DUF3949-domain-containing-protein	unknown	unknown	gnl\|CDD\|315735
NZ_CP053981.1\|WP_001010612.1\|98523_98928_-\|PH-domain-containing-protein	unknown	unknown	gnl\|CDD\|369049
NZ_CP053981.1\|WP_000658369.1\|101335_102454_-\|nicotinate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235953
NZ_CP053981.1\|WP_001057490.1\|95715_96042_-\|bacillithiol-system-redox-active-protein-YtxJ	unknown	unknown	gnl\|CDD\|378538
NZ_CP053981.1\|WP_000636582.1\|91535_91808_-\|DUF3917-domain-containing-protein	unknown	unknown	gnl\|CDD\|372449
NZ_CP053981.1\|WP_001197727.1\|96041_96554_-\|DUF948-domain-containing-protein	unknown	unknown	gnl\|CDD\|227109

Protein	Function_ID	Function_description	E-value
NZ_CP053981.1\|WP_000023843.1\|87666_89121_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	3.51712e-61
NZ_CP053981.1\|WP_001982862.1\|86975_87665_-\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	1.29328e-84
NZ_CP053981.1\|WP_001197727.1\|96041_96554_-\|DUF948-domain-containing-protein	gnl\|CDD\|227109	COG4768, COG4768, Uncharacterized protein containing a divergent version of the methyl-accepting chemotaxis-like domain [General function prediction only].	7.76529e-35
NZ_CP053981.1\|WP_000219465.1\|99772_101083_-\|UDP-N-acetylmuramate--L-alanine-ligase	gnl\|CDD\|234757	PRK00421, murC, UDP-N-acetylmuramate--L-alanine ligase; Provisional.	0
NZ_CP053981.1\|WP_001057490.1\|95715_96042_-\|bacillithiol-system-redox-active-protein-YtxJ	gnl\|CDD\|378538	pfam11009, DUF2847, Protein of unknown function (DUF2847). Some members in this bacterial family of proteins with unknown function are annotated as YtxJ, a putative general stress protein. This cannot be confirmed.	4.38943e-48
NZ_CP053981.1\|WP_012680356.1\|92574_92937_+\|DUF4288-domain-containing-protein	gnl\|CDD\|379479	pfam14119, DUF4288, Domain of unknown function (DUF4288). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 120 amino acids in length.	4.66665e-20
NZ_CP053981.1\|WP_001103285.1\|92972_93971_-\|catabolite-control-protein-A	gnl\|CDD\|130546	TIGR01481, catabolite_control_protein_A, catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways. [Regulatory functions, DNA interactions].	0
NZ_CP053981.1\|WP_000267006.1\|91085_91484_+\|large-conductance-mechanosensitive-channel-protein-MscL	gnl\|CDD\|184416	PRK13955, mscL, large conductance mechanosensitive channel protein MscL.	1.03243e-76
NZ_CP053981.1\|WP_000475171.1\|89270_89951_+\|ankyrin-repeat-domain-containing-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	2.81957e-25
NZ_CP053981.1\|WP_000654739.1\|96741_97857_+\|aminopeptidase	gnl\|CDD\|225191	COG2309, AmpS, Leucyl aminopeptidase (aminopeptidase T) [Amino acid transport and metabolism].	2.90365e-128
NZ_CP053981.1\|WP_000042825.1\|90030_90957_+\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	1.33024e-47
NZ_CP053981.1\|WP_000494671.1\|99019_99574_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	2.90673e-28
NZ_CP053981.1\|WP_000637893.1\|92336_92573_+\|DUF3949-domain-containing-protein	gnl\|CDD\|315735	pfam13133, DUF3949, Protein of unknown function (DUF3949). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 69 and 87 amino acids in length.	3.45415e-24
NZ_CP053981.1\|WP_000658369.1\|101335_102454_-\|nicotinate-phosphoribosyltransferase	gnl\|CDD\|235953	PRK07188, PRK07188, nicotinate phosphoribosyltransferase; Provisional.	0
NZ_CP053981.1\|WP_000738004.1\|94581_95598_-\|CamS-family-sex-pheromone-protein	gnl\|CDD\|227188	COG4851, CamS, Protein involved in sex pheromone biosynthesis [General function prediction only].	4.95096e-63
NZ_CP053981.1\|WP_000636582.1\|91535_91808_-\|DUF3917-domain-containing-protein	gnl\|CDD\|372449	pfam13055, DUF3917, Protein of unknown function (DUF3917). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 90 amino acids in length.	5.52795e-24
NZ_CP053981.1\|WP_001010612.1\|98523_98928_-\|PH-domain-containing-protein	gnl\|CDD\|369049	pfam06713, bPH_4, Bacterial PH domain. This family consists of several hypothetical proteins specific to Oceanobacillus and Bacillus species. Members of this family are typically around 130 residues in length. The function of this family is unknown. Members of this family have a PH domain like structure.	4.96286e-11

>NZ_CP053981.1|WP_001103285.1|92972_93971_-|catabolite-control-protein-A
MNVTIYDVAREANVSMATVSRVVNGNPNVKPTTRKKVLEAIDRLGYRPNAVARGLASKKTTTVGVIIPDISNTFYAELARGIEDIATMYKYNIILSNSDQNKEKEFHLLNTMLGKQVDGIVFMGEDITDIHAEEFKKSPVPIVLAASFDEQNETPSVNIDYTQAAYDAMKHFIEQGHKRIGFVSGPFIDKAGSAKKLQGYRKALEEAGISYDENLVIDGDYTYDSGIEAFEKLWSLDEKPTAIFVSSDEMALGVIHAAQDAGLNVPTDVEVLGFDNTRLALMVRPQLSTVVQPMYDIGAVAMRLLTKYMNKEKVEDHTVILPHRIQFRDSTK
>NZ_CP053981.1|WP_012680356.1|92574_92937_+|DUF4288-domain-containing-protein
MYAVKLLFESVHSGEPDPTKMDGHYEENHDTLFEESIILVKASSLEEAHALSEQIAIQSEHTYVNMYDEQITWTFRKVLHVFELDNAPFETGKELYARFLHVKKNETVDTIIQTYYPEYK
>NZ_CP053981.1|WP_000637893.1|92336_92573_+|DUF3949-domain-containing-protein
MIWISLIVLAYFIILVPIQYNYIKLLKEKQKKLNVSQNELYDNMSYEESQVHYHYQSNVFTIPASLVASIIYRVKHAA
>NZ_CP053981.1|WP_000389138.1|91958_92255_+|hypothetical-protein
MEDDIVGYFTQVERFDYITIDLDKKFFYMEVVQLETNITLLKISLNLDKDETIIAGNVKQYDPSRLEQFIQSFKHTAQTCLAHNLRSPEELFAFWKGN
>NZ_CP053981.1|WP_000636582.1|91535_91808_-|DUF3917-domain-containing-protein
MIVLWIITLCITAIFAYMTLKQNGLKRFVPGSILAGIALITYVTSIFIESVSVDMSTSFMFMGITLFASSLMILMVAGIILFIHMNSETL
>NZ_CP053981.1|WP_000267006.1|91085_91484_+|large-conductance-mechanosensitive-channel-protein-MscL
MWNEFKKFAFKGNVIDLAVGVVIGAAFGKIVSSLVKDIITPLLGMVLGGVDFTGLKITFGKASIMYGKFIQTIFDFLIIAAAIFMFVKVFNKLTSKREEEKEEELPEPTKEEELLGEIRDLLKQQNSSKDRA
>NZ_CP053981.1|WP_000042825.1|90030_90957_+|Gfo/Idh/MocA-family-oxidoreductase
MSKPNIGMIGLGSIAQKAYLPTFTKETNWNFVGAFTPNAEKRKQICQQYRIQDFHSIETLASECDAIFVHSSTASHYEIVSELLKKGIDVYVDKPLAATVEQAEKLVELSEKYNRKLMVGFNRRFVPMYVAAKEQAHHISWIRIEKHRTNKVGPYTYDFTMLDDYLHIVDTARWLANDELNVVHNMMQINEKNELLYGHHTYTTANGLLLSTAMHRHAGTNLEQIELVTAGKIIRVKNMNTFEVEQENSVSQSGSPSWETTLKQRGFEDAVHHFIDCVHGDTKPVVDGLEGLRTQQLLQSLLDDANKK
>NZ_CP053981.1|WP_000475171.1|89270_89951_+|ankyrin-repeat-domain-containing-protein
MFKKTVSMICCVIFLQGCSQEQEVKKEMTNMETALLTATEKQETNTVISLLKKGADINITDNKGRTPLMIATYKNDVKTAKALIDAGADVNIQDDMKNNPFLYAGAEGYLHILKLTIDAGADPSLTNRYGGTALIPASEHGYIDVIKELLTRTNIDINHVNKLGWTALMEAIVLSNGNETQQQVIRLLIEYGADINIPDNDGITPLEHARAHHFEEIEKILLEGRK
>NZ_CP053981.1|WP_000023843.1|87666_89121_-|HAMP-domain-containing-histidine-kinase
MSIKTRFLFSYIAVILVSITLILIAGFLIVFSITGDLEAVKNFYKSSYIQKPLTSEEENAYIELKTAAKKHQSQLLDESFVSSLEKEGVKIVVRKGETISYATKVFESVALKEALPKFESANINSRGTTELGDTFYRYVKFDFYFPQEEEGSIFVLKKQSSFVDLTQKLFPILFVSLLLLAILLIGLLSYLVSRSVIKPIFVLKDATGKIKEGNLDFQIPVTSHDEIGQLNQGFEEMRKKLKESIEMQTQYEENRKELISNISHDLKTPITSIIGYVEGIKDGVANTPEKMDKYLTTIHTKARHMDTLIDELFLFSKLDLNRVPFQFETVELNMFMQELIEEMQMDLSKEGIEVNLQLHASPLYVTADCEKINRVISNLIHNSVKYMDKEEKKITVTVSSDNNKVIVKVMDNGSGIESDTLPYIFERFYRAEQSRNSSTGGSGLGLAIAKQIIEEHGGNIWAESELGEGTSIFFSLEKVEKCGE
>NZ_CP053981.1|WP_001982862.1|86975_87665_-|response-regulator-transcription-factor
MKRILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQMALQEDYDLIILDIMLPKMNGFEICKQIRAIKDIPILLVSAKKEDIDKIRGLGLGADDYITKPFSPSELVARVKAHISRYERLLGNVSKQRDTLYIHGISIDQRARKVFINNEEIAFTTKEFDLLTFFVTNPNQVLNKEQLFERIWGLDSAGDLATVVVHIRKLREKIERDPAHPQYIETVWGAGYRFNV
>NZ_CP053981.1|WP_000738004.1|94581_95598_-|CamS-family-sex-pheromone-protein
MKKMALSFAVVSLLLGACSNDTISKKDEVIQKDTKEKSMIPRTAVSKDYYRTVIPLKEQKVINTANIKTNSKLDLAEYENGLMNIAKEQFDTENHVLQLNQYIPEKLVDELVAKVEAPVLTNIIEQDYFGKQNSNELSLSGVMIGLAMSSSVSNEEAMSKGTEVANQLIEAIHKNDKYNKSPITFAIFKQESTSSLKNGTYIASATVQKNDTNLGNWNAIEEKAYSYPSDEFTQAHGEDNTKINKFAEEMKGFSPGDFIPVNAKVSYKKNQMDTLNMNIVIKYNGKTELMALTQLAAQIMLEQLPKDAKVQLQIKSENKIEAIVIKEKNSDKPFVSFL
>NZ_CP053981.1|WP_001057490.1|95715_96042_-|bacillithiol-system-redox-active-protein-YtxJ
MNMTKVETIEELEVLVEKNEPYVLFKHSTTCPISHGAYTEFQAYCSEERAVPAYYLYVQDARDVSNRVAEQYSIKHESPQVLYIKDGMVVWNTSHWNIKKDALEENIK
>NZ_CP053981.1|WP_001197727.1|96041_96554_-|DUF948-domain-containing-protein
MQVLLYVSAAIIAVAFAVLVVYVCRTLLSVQKTLENVASTLEGLEKQMQGISVETEQLLHKTNALADDIQQKSQSLNKVVSGVDGIGTTIHSLNTKLRNVSESVTDEIENNADKVAQVVQWSSAAIEVYNHYRATRQEKKVEKEERKLERLEKKVEKKEKRSRLRMRGES
>NZ_CP053981.1|WP_000654739.1|96741_97857_+|aminopeptidase
MKDPRIEKLAYNLINYSIRLQKGEKVLIENFGLQKELVTALVKEAYAAGGFPFVSLKDHQVDRSLLMGATEEHFEQIAAYEASVMKDMDAYIGLRSGDNINEQADVPSERMQIHGQTVGKKVHRDIRVPKTRWVVLRYPNASMAQLAKMSTEAFEDFYFEVCNLDYGKMDKAMDSLVTLMNKTDKVRLTGPGTDLTFSIKDIPAIKCSGHLNIPDGEVYSAPVRDSVNGTVSYNTPSPYNGYTFENVQLKFENGQIVEATANDTERINKIFDTDEGARYVGEFAIGVNPYILHPMGDILFDEKIDGSFHFTPGQAYDDAWNGNNSNIHWDLVCIQRPEYGGGEIYFDDVLIRKDGRFVVPELEALNPENLK
>NZ_CP053981.1|WP_000757116.1|97894_98329_-|hypothetical-protein
MKKVLMLFVLLLTASVLLLGCSMKKEKANMNLEKAQKVEIESLTDSGDKKVITDKKEIEKLFEVMKMDKWEMQSAPLDTPQGKTFKMYQEDTTKLSESSKDKKELHEIGTMIVYKDVPYVEVEMKNKKMSFKVPEDAAKELLKY
>NZ_CP053981.1|WP_000878354.1|98344_98527_-|hypothetical-protein
MKYVKPLFCLEILFVLVGCTRVYMKWNLPLYVPILIGTIAVALLYYFHFQQTKSEKSSSI
>NZ_CP053981.1|WP_001010612.1|98523_98928_-|PH-domain-containing-protein
MNFPIQRSKSVIFFVCLTLAFMFVYPLVMIIANKEQWMSALIGMGLCFVVNVPLVWEVFIKQHKVENGVLKYGILNDDIVLKEIRIIRQVGKSLEITTNAYKVHMVAMPQQMEQFLSLVEKENSHVKIEMVGKK
>NZ_CP053981.1|WP_000494671.1|99019_99574_-|GNAT-family-N-acetyltransferase
MFTLRVDDEIELQLLEKHHKEELYQLINQNRNHLRRWLPWVDGTKSADAYNEICPMWLKKFAEGDGFESGIRYKGKLVGMVGIHPVSWGKKAASLGYYLAEDAGGKGIMTRSVKAVLHYAFENLKLNKMEIRCGVENVKSRAIPERLGFKLDGILRDEEWLYDHFHDIAVYSLLASEWKEIQDK
>NZ_CP053981.1|WP_000219465.1|99772_101083_-|UDP-N-acetylmuramate--L-alanine-ligase
MTVYHFVGIKGTGMSSLAQILHDMKHTVQGSDYEKRFFTQTALEKRNISILPFDKSNVKEGQVIIAGNAFPDTHEEIVAAKELNIPVHRYHHFLGDLMNQYTSVAVTGAHGKTSTTGLLAHVMQGAHPTSYLIGDGTGHGVENSKYFVFEACEYRRHFLSYNPDYAIMTNIDFDHPDYFTDINDVFSAFQEMALQVKKGIIACGDDEELQKIQAKVPVIFYGFGEDNDFQARNIQKRTDGTIFDVFVRNTYYDTFKITGYGNHSVLNALAVIALCHYENVDVEAVKHQLTTFEGVKRRFNEKPMGEQVIIDDYAHHPTEINATIEAARQKHPEREIVAVFQPHTFSRTEKFLDEFAESLSKADQVYLCDIFGSARENKGELTIEDLQKRIDGAELITDTTTDVLKKHKNGVLIFMGAGDIQKFEAAYVKEVQVAEK
>NZ_CP053981.1|WP_000658369.1|101335_102454_-|nicotinate-phosphoribosyltransferase
MKEIELKLKGEINRLTNKTFKFDERVGEGWFSAVYFLKTREIIEEFRPKSVVTMQFFQKENAVLCGTDEVIALLQTFAKNPEELEINSLKDGDKISPFETVLTIHGPYENFGFLEGVIDGILARRTSVATNVYNVVQAARSVDKEKPVIFMGDRDDHYTQQAGDGYAAYIGGMSAQATHAMNEWWGKSGMGTMPHALIQMFNGDVVEAAKAYHKKFPEDELVVLIDYNNDVITDALRVAREFGSTLKGVRVDTSRTMIDQYFIRHPEVLGTFDPRGVNPSLVFALRKALDEEGFQHVDIVVTGGFDEKRIREFEAQNVPVDIYGVGSSLLKMNIGFTGDNVELNGKPEAKAGRKYRPNPRLERVQLEKREDM

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Crispr_ID: NZ_CP053981_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053981_2

266535-266621

Orphan

Consensus_repeat	Method
GATATATCTTAAAAATCGCTGATATA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP053981_2

>merge|NZ_CP053981|2|266535-266621|CRISPRCasFinder
GATATATCTTAAAAATCGCTGATATATTTTAAGTATCGGTCGATAAAATGTGAAAATCGCCGATAAAAGTTAAGAATCGCTGATATA

>NZ_CP053981|2|2|266535-266621|CRISPRCasFinder
GATATATCTTAAAAATCGCTGATATA	TTTTAAGTATCGGTCGATAAAATGTGAAAATCGCC
GATAAAAGTTAAGAATCGCTGATATA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053981.1\|WP_001147838.1\|264466_265249_+\|TIGR00266-family-protein	unknown	unknown	gnl\|CDD\|376704
NZ_CP053981.1\|WP_000504155.1\|270646_271681_-\|glucose-1-phosphate-adenylyltransferase-subunit-GlgD	unknown	unknown	gnl\|CDD\|273966
NZ_CP053981.1\|WP_001059246.1\|258760_260515_-\|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase	unknown	unknown	gnl\|CDD\|236020
NZ_CP053981.1\|WP_001193054.1\|263939_264140_-\|cold-shock-protein	unknown	unknown	gnl\|CDD\|224197
NZ_CP053981.1\|WP_000425747.1\|262100_263054_+\|1,4-dihydroxy-2-naphthoate-polyprenyltransferase	unknown	unknown	gnl\|CDD\|235695
NZ_CP053981.1\|WP_000616718.1\|260511_261906_-\|isochorismate-synthase	unknown	unknown	gnl\|CDD\|224091
NZ_CP053981.1\|WP_000386685.1\|289071_289752_+\|MgtC/SapB-family-protein	unknown	unknown	gnl\|CDD\|224204
NZ_CP053981.1\|WP_000715339.1\|280216_281161_-\|L-lactate-dehydrogenase	unknown	unknown	gnl\|CDD\|178836
NZ_CP053981.1\|WP_000057610.1\|271699_272830_-\|glucose-1-phosphate-adenylyltransferase	unknown	unknown	gnl\|CDD\|179997
NZ_CP053981.1\|WP_000494083.1\|266676_269085_-\|glycogen-phosphorylase	unknown	unknown	gnl\|CDD\|340853
NZ_CP053981.1\|WP_001260120.1\|265527_266250_+\|lipase-family-protein	unknown	unknown	gnl\|CDD\|238287
NZ_CP053981.1\|WP_001103368.1\|257951_258764_-\|2-succinyl-6-hydroxy-2,-4-cyclohexadiene-1-carboxylate-synthase	unknown	unknown	gnl\|CDD\|274729
NZ_CP053981.1\|WP_000957374.1\|263163_263895_+\|yteA-family-sporulation-protein	unknown	unknown	gnl\|CDD\|274340
NZ_CP053981.1\|WP_033681254.1\|269103_270534_-\|glycogen-synthase-GlgA	unknown	unknown	gnl\|CDD\|234809
NZ_CP053981.1\|WP_000842310.1\|289847_290843_+\|potassium-channel-protein	unknown	unknown	gnl\|CDD\|369572
NZ_CP053981.1\|WP_000053948.1\|275183_275789_+\|M73-family-metallopeptidase	unknown	unknown	gnl\|CDD\|372085
NZ_CP053981.1\|WP_000111385.1\|272777_274715_-\|1,4-alpha-glucan-branching-protein-GlgB	unknown	unknown	gnl\|CDD\|235445
NZ_CP053981.1\|WP_000728869.1\|275821_280045_+\|S8-family-serine-peptidase	unknown	unknown	gnl\|CDD\|173800
NZ_CP053981.1\|WP_000449557.1\|255387_256833_-\|o-succinylbenzoate--CoA-ligase	unknown	unknown	gnl\|CDD\|235146
NZ_CP053981.1\|WP_000963876.1\|257063_257882_-\|1,4-dihydroxy-2-naphthoyl-CoA-synthase	unknown	unknown	gnl\|CDD\|180958

Protein	Function_ID	Function_description	E-value
NZ_CP053981.1\|WP_001147838.1\|264466_265249_+\|TIGR00266-family-protein	gnl\|CDD\|376704	pfam01987, AIM24, Mitochondrial biogenesis AIM24. In eukaryotes, this domain is involved in mitochondrial biogenesis. Its function in prokaryotes in unknown.	2.19617e-86
NZ_CP053981.1\|WP_000504155.1\|270646_271681_-\|glucose-1-phosphate-adenylyltransferase-subunit-GlgD	gnl\|CDD\|273966	TIGR02092, Glycogen_biosynthesis_protein_GlgD, glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	1.51781e-124
NZ_CP053981.1\|WP_001059246.1\|258760_260515_-\|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase	gnl\|CDD\|236020	PRK07449, PRK07449, 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated.	0
NZ_CP053981.1\|WP_001193054.1\|263939_264140_-\|cold-shock-protein	gnl\|CDD\|224197	COG1278, CspC, Cold shock proteins [Transcription].	2.0492e-32
NZ_CP053981.1\|WP_000425747.1\|262100_263054_+\|1,4-dihydroxy-2-naphthoate-polyprenyltransferase	gnl\|CDD\|235695	PRK06080, PRK06080, 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated.	1.86783e-131
NZ_CP053981.1\|WP_000616718.1\|260511_261906_-\|isochorismate-synthase	gnl\|CDD\|224091	COG1169, MenF, Isochorismate synthase [Coenzyme metabolism / Secondary metabolites biosynthesis, transport, and catabolism].	1.24109e-114
NZ_CP053981.1\|WP_000386685.1\|289071_289752_+\|MgtC/SapB-family-protein	gnl\|CDD\|224204	COG1285, SapB, Uncharacterized membrane protein [Function unknown].	4.42486e-52
NZ_CP053981.1\|WP_000715339.1\|280216_281161_-\|L-lactate-dehydrogenase	gnl\|CDD\|178836	PRK00066, ldh, L-lactate dehydrogenase; Reviewed.	0
NZ_CP053981.1\|WP_000057610.1\|271699_272830_-\|glucose-1-phosphate-adenylyltransferase	gnl\|CDD\|179997	PRK05293, glgC, glucose-1-phosphate adenylyltransferase; Provisional.	0
NZ_CP053981.1\|WP_000494083.1\|266676_269085_-\|glycogen-phosphorylase	gnl\|CDD\|340853	cd04300, GT35_Glycogen_Phosphorylase, glycogen phosphorylase and similar proteins. This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.	0
NZ_CP053981.1\|WP_001260120.1\|265527_266250_+\|lipase-family-protein	gnl\|CDD\|238287	cd00519, Lipase_3, Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site. .	6.32344e-48
NZ_CP053981.1\|WP_001103368.1\|257951_258764_-\|2-succinyl-6-hydroxy-2,-4-cyclohexadiene-1-carboxylate-synthase	gnl\|CDD\|274729	TIGR03695, menH_SHCHC, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase. [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone].	9.62975e-130
NZ_CP053981.1\|WP_000957374.1\|263163_263895_+\|yteA-family-sporulation-protein	gnl\|CDD\|274340	TIGR02890, conserved_hypothetical_protein, regulatory protein, yteA family. Members of this predicted regulatory protein are found only in endospore-forming members of the Firmicutes group of bacteria, and in nearly every such species; Clostridium perfringens seems to be an exception. The member from Bacillus subtilis, the model system for the study of the sporulation program, has been designated both yteA and yzwB. Some (but not all) members of this family show a strong sequence match to Pfam family pfam01258 the C4-type zinc finger protein, DksA/TraR family, but only one of the four key Cys residues is conserved. All members of this protein family share an additional C-terminal domain. Smaller proteins from the proteobacteria with just the N-terminal domain, including DksA and DksA2 are RNA polymerase-binding regulatory proteins even if the Zn-binding site is not conserved. [Unknown function, General].	7.0071e-76
NZ_CP053981.1\|WP_033681254.1\|269103_270534_-\|glycogen-synthase-GlgA	gnl\|CDD\|234809	PRK00654, glgA, glycogen synthase GlgA.	0
NZ_CP053981.1\|WP_000842310.1\|289847_290843_+\|potassium-channel-protein	gnl\|CDD\|369572	pfam07885, Ion_trans_2, Ion channel. This family includes the two membrane helix type ion channels found in bacteria.	1.50592e-14
NZ_CP053981.1\|WP_000053948.1\|275183_275789_+\|M73-family-metallopeptidase	gnl\|CDD\|372085	pfam12389, Peptidase_M73, Camelysin metallo-endopeptidase.	1.26785e-97
NZ_CP053981.1\|WP_000111385.1\|272777_274715_-\|1,4-alpha-glucan-branching-protein-GlgB	gnl\|CDD\|235445	PRK05402, PRK05402, 1,4-alpha-glucan branching protein GlgB.	0
NZ_CP053981.1\|WP_000728869.1\|275821_280045_+\|S8-family-serine-peptidase	gnl\|CDD\|173800	cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins. The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	1.03304e-72
NZ_CP053981.1\|WP_000449557.1\|255387_256833_-\|o-succinylbenzoate--CoA-ligase	gnl\|CDD\|235146	PRK03640, PRK03640, o-succinylbenzoate--CoA ligase.	0
NZ_CP053981.1\|WP_000963876.1\|257063_257882_-\|1,4-dihydroxy-2-naphthoyl-CoA-synthase	gnl\|CDD\|180958	PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated.	0

>NZ_CP053981.1|WP_001260120.1|265527_266250_+|lipase-family-protein
MRTPLSFDKDTAILLASCCELTYEQYKQNGIFEIPDGFQYVQGFQGKTIQTTEWFGFILESEDTIIVAFRGTQTDTDWIIDSLVNQKPYPYALNSGNVHNGFLSIYESCRDSIMDMLVSLPAHKKLLATGHSLGGALATLHILDARINTAFAQYGLYTFASPKVGDIAFRNYYKLQVASSFRFVNLFDVVPLLPPRNVHFNEQDWEYAHVHHNMTFTKNTKSIANNHAMTTYKTCLTSHF
>NZ_CP053981.1|WP_001147838.1|264466_265249_+|TIGR00266-family-protein
MQAHEIEYKLYGDDMQFVEIELDPEESVIAEAGAMMMMEDYIEMETIFGDGSGPSGGLFGKLMGAGKRLVTGESMFMTVFTNTGHGKRHVSFAAPYPGKIIPVDLTEYQGKVVCQKDAFLCAAKGVSIGIEFTKKIGTGFFGGEGFIMQKLEGDGLAFMHAGGTVYKRELKPGEKLRIDTGCLVAMTKDVNYDVEFVGKVKTALFGGEGLFFATLEGPGTVWIQSLTLSRLSARLTSPAAQGSGEGSVLGGLGRLLDGKE
>NZ_CP053981.1|WP_001193054.1|263939_264140_-|cold-shock-protein
MQTGKVKWFNSEKGFGFIEVEGGDDVFVHFSAIQGDGFKTLEEGQEVSFEIVEGNRGPQAANVTKN
>NZ_CP053981.1|WP_000957374.1|263163_263895_+|yteA-family-sporulation-protein
MLTPQQINQFKSVLEKQKQELEQTIQTHENEDRASERESVGELSSYDNHPADMATELYEREKDFGLIELWHKQLEDTKHALQKIEAGTYGICEVSGEEIPFERLEAMPTATTCIQHATNKLNMDTRPVEEEVLSPSFHKHDEDRSVEYDAEDAWQDVANYGTSETPADLERRDSKNYNGMYVNSEENVGYVEDFENFIGTDMYGKNPQVFATEEHEEYEQMLDDFEDRTFKGELSSNESSSKE
>NZ_CP053981.1|WP_000425747.1|262100_263054_+|1,4-dihydroxy-2-naphthoate-polyprenyltransferase
MEMNVETNSSPTAPKPSKQTGWRIWWSLLRPHTLTAAFVPVFIGTAYAMQVGGINQIHLPLFLIMLLACLLIQAATNMFNEYFDYKRGLDHEGSVGIGGAIVRDGIQPKTVLNLAFGFFGIAILLGVYICMNSSWWLAAIGLVCMAVAYLYTGGPLPIAYTPFGELTAGLFMGVIIIGISFFIQTGTVTSEVVLLSIPSSILIGAILLANNIRDLDGDKENGRKTLAILVGRERAVGVLASMFIVSYIWTIALIIVGIVSPWMLIVFLSAPKAFKATKGFIGKSIPMEMVPAMIATAKTNTIFGLLMGIGLLLGYFL
>NZ_CP053981.1|WP_000616718.1|260511_261906_-|isochorismate-synthase
MIQTKQIGLQEVLSAAIKRATDEKILVSFVKQIDWMDPLLFYAAGKRIAFENRCYFADPAQHVIFAGIGSVFTIATASHKRFQTARDEWDKVKEKAFVQREKYEFGTGPLLFGGFSFDQEKEKTDLWKEFDDTTFSLPAFLLTVKNEKVWLTMNTFVSATDCAETLYNEIVSLEEKIFEESKCALEGSKLTVTSKVEVDPKGWMKAIEKVQDEMKQGNVQKVVLARELKVEMDHHIDSALVLEALRIGQPDCYVFSFDYKGACFLGATPERLIRKEDEKFTSMCLAGSTGHGQSIEESKRNSNALLHDEKNLAEHGYVVNMIRSVLNEHCEYVNIPESPGLLTTKNLIHLYTPVEAKGDASLLTMVEELHPTPALGGTPRLEAMKLIRDVELLDRGLYGAPIGWIDDEGNGEFAVALRCGLLNGEKASLFAGCGIVIDSVPQLEYEETSLKFRPMLGALEELMK
>NZ_CP053981.1|WP_001059246.1|258760_260515_-|2-succinyl-5-enolpyruvyl-6-hydroxy-3--cyclohexene-1-carboxylic-acid-synthase
MNNHIEALSYYLGAFVDELTRLNVCDVVISPGSRSTPIALLMEQHEGMNTYLHVDERSAGFFALGIAKAKKRPVALLCTSGTAAANYYPAVCEAFHSRVPLIVLTADRPHELRDVGAPQAMNQINLYGTFVKQFTEMALPEASEAMYHYARMTTQRMIASACLAPQGPVHLNFPVREPLIPDFSLESLWDKGRGEYTGVVQQGNAVMPSEYVDSLVGRLSHMEKGLIICGDDSHSEIATFATQLAEKTGYPILADPLSNIRSGHHDKTMVIDCYDTFLRNELLKETWKPDVLIRFGGMPVSKALTQFIKKQTKAVHIVVDESGQWRDPALVATEVVQASDIAFCSALIEKMPVMKKNDWFRMWQHINEKTKETLREMETYDTAFEGRVITDIVRVLPEGATLFASNSMPIRDTDSFFFTSDKNIQVMANRGVNGIDGIISTALGASMICDPLVLVIGDLSFYHDLNGLLAAKLHELNITIVVVNNDGGGIFSFLPQYEKKEHFESLFGTPIGLDYEHVVTMYGGSFSRVNGWEQFREEVQKGATTEGLHVVEICTNRDENLTLHRKLWAKTQDVITTSLQGESK
>NZ_CP053981.1|WP_001103368.1|257951_258764_-|2-succinyl-6-hydroxy-2,-4-cyclohexadiene-1-carboxylate-synthase
MNVTLQGVSYEYEVVGSGEPLLLLHGFTGSMETWRSFVPSWSEQFQVILVDIVGHGKTESPEDVTHYDIRNAALQMKELLDYLHIEKAHILGYSMGGRLAITMACLYPEYVRSLLLENCTAGLEREDERKERCEKDERLADKIEREGIESFVTMWENIPLFETQKSLAQNVQEAVRKERLANNSNGLANSLRGMGTGAQPSWWNELQNLKMPVLLMNGEYDEKFFRILKNIEKCVSDAKFVKIDGAGHAIHVEQPEKFDTIVKGFLKTMQ
>NZ_CP053981.1|WP_000963876.1|257063_257882_-|1,4-dihydroxy-2-naphthoyl-CoA-synthase
MAIEWVKEGNYEDIIYSTYNGIAKISINRPEVHNAFRPKTVMELIDAFAHARDDANVGVIILTGEGGRAFCSGGDQKVRGHGGYVGDDQIPRLNVLDLQRLIRAIPKPVIAMVAGYAIGGGHVLHIVCDLTIAADNAVFGQTGPKVGSFDGGYGAGYLARMVGHKKAREIWYLCRQYNAQEALDMGLVNTVVPLEQLEAETVQWAQEILANSPMALRFLKAAFNADTDGLAGIQQLAGDATLLYYTTDEAKEGRDAFKEKRSPDFGQFPRFP
>NZ_CP053981.1|WP_000449557.1|255387_256833_-|o-succinylbenzoate--CoA-ligase
METMPNWLKQRAFLTPDRTAIEIEEEKVTFVQLHEKVVSVCEHLTHVGVKRGQKVAVLMKNGMEMITVIHALSYVGAVAVLLNTRLSREELLWQMDDAEVICLVTDQDFEAKDIPVYSFAEVMNGPKEEASIQEEFSLREAMTIIYTSGTTGKPKGVILTYGNHWASAVGSSLNLGLRDDDCWLACMPMFHVGGLSLLMKNIMYGMRILLVPKYDADFIHKALQTRGVTIISVVSKMLTDLLERLGEGTYPSSLRCMLLGGGPAPKPLLETCVDKGIPVYQTYGMTETSSQICTLSADYMLTKVGSAGKPLFQCQLRIEKDGVVVPPFVEGEIVVKGPNVTGGYFNREDATRETIQNGWLHTGDLGYLDEEGFLYVLDRRSDLIISGGENIYPAQIEEVLLSHPMVAEAGVVGMTDDKWGQVPAAFVVKSGEITEEEILHFCEEKLAKYKVPKKACFLEELPRNASKKLLRRELRQLVEEM
>NZ_CP053981.1|WP_000494083.1|266676_269085_-|glycogen-phosphorylase
MFTHVESFKSAFLEKLETMYGKSFKDSTTRDQYNTLGYMVREYMNSQWIATNESYRSGERKQMYYLSIEFLLGRLLGSNILNLGIRDVCEQGLSELGISLQQLEEVEADAGLGNGGLGRLAACFLDSLASLNLPGHGCGIRYKHGLFDQKIVDGYQVEFPEQWLLHENVWEVRRHDQAVEVSYFGNVEPLYIDGRLEFRHTNAEVIMAVPYDVPVVGYETSTVNTLRLWNAEPVPFPQNCKDILKYKRETEAVSEFLYPDDTHDEGKILRLKQQYFLVSASLQNIVRLHRERYGDLRQLHEKIAIHINDTHPVLAIPELMRILLDEEKLAWEEAWHITTQTISYTNHTTLSEALEKWPIHIFKPLLPRIYMIIEEINERFCHELWERYPYEWHRIEEMAIIAHDLVKMAHLAIVGSHSVNGVAKIHTEILKQREMRLFYEFYPDKFNNKTNGIAHRRWLMKANPQLTNLISEAIGTEWKKEPIKLQELQLVQYDASFQEKFAEVKQERKEILAERIHNTMGITIDPNSIFDVQVKRLHAYKRQLLNVLHILYLYNRLKEDASFTFYPRTFIFGAKASPGYYYAKKIIKLINELARKVNNDPYVSQYMKVIFLENYRVSLAEDIFPAADVSEQISTASKEASGTGNMKFMMNGAITLGTLDGANIEIKDRVGDDNCFIFGLTAEEVLHYYQNGGYRASDYYHHNGHIKKVVDQLTNGFFAQSGAEFEAIYDSLVIQNDEYFVLRDFGPYAERQEAVGRAYENRTKWLEMSILNIAQSGHFASDRTILQYSNEIWGIGNTVTQI
>NZ_CP053981.1|WP_033681254.1|269103_270534_-|glycogen-synthase-GlgA
MNILFAVSECVPFVKSGGLADVAGALPKELKKLGVEVRIILPNYSLIPQKLRDGCTLHKVINVPLGWRNQYCGILKGEQDGITYYLIDNEYYFKRDSLYGHYDDGERFSYFSKAVLECIPHLDFEVDVLHSHDWHTAMVNFLLREKYQDNPLYEHIKTVYTIHNLQFQGVFPPEVMYDLLELGDEYFHSEQLEFYGNVNFMKGGIIASDQITAVSPTYKEEIQYEFFGEKLDGLLRKYNDKLSGIVNGIDTSVYNPETDSYITAQYAVDSLYEKNENKRALQRYFGLPEKEDTPIISMVTRLTKQKGLDLVRTVFREIMEEDVQCIILGSGDSEYEQFFEWMAYEYPEKVKVYIGFNEELAHQVYAGSDLFLMPSLFEPCGLGQLIALAYGTIPIVRETGGLNDTVQSYDEETGEGNGFSFTNFNAHDMLHTVLRAIEFYHDKPVWDRLVKQAMTEDYSWEKSALAYKKLYKSLME
>NZ_CP053981.1|WP_000504155.1|270646_271681_-|glucose-1-phosphate-adenylyltransferase-subunit-GlgD
MGEKMLGIINATGSFPSLKKVTGHRSLAALPFGGRYRLIDFMLSNMVNSNIHSVAVFTSHKNRSLMDHVGSGKQWDLDRKRDGLFLFPPNCQCDQDEFGSFAHFRRHIDYFLRSREEYVVITNSHLVTALNFQAVLERHIHTAADITEVCHEGVSLQTYVLKKQLLLDLFEAYKDMEQYSLFDVVREKRGKSLHIATYEHTGYVAIIDSIESYYKHSLEILQPAIWKQVFKKEAPIFTKVKDEPPTRYVKGAAVKNTMIANGSIIEGEVENSVVSRSVKIGKGSIVRNSIIMQKSQIGDNCIIDGVIIDKDVKIGDGVVLKGNADEPYVVEKGSVQNSTINSYS
>NZ_CP053981.1|WP_000057610.1|271699_272830_-|glucose-1-phosphate-adenylyltransferase
MAQKQKCVAMLLAGGKGSRLSALTKNLAKPAVPFGGKYRIIDFTLSNCANSGIETVGILTQYQPLELHNYIGIGNAWDLDRVSGGVTVLPPYAESSGVKWYTGTASAIYQNLNYLSQYEPDYVLILSGDHIYKMDYSKMLDYHIEKEADVSISVIEVPWDEASRFGIMNTNEEMEIVEFEEKPQFPRSNLASMGIYIFNWAILKEYLEMDARNPESSNDFGKDVLPLLLDEGKKLMAYPFEGYWKDVGTVKSLWEANMDLLRDETSLNLNDRDWRIYSVNPNEPPQYIAEKAKVEESLINEGCVIEGDVKHSVLFQGVTVEEGSMVIDSVVMPGAKIGKNVVIERAIVGSEMVIEDGTIIRPEKNVDDVVLIAEGK
>NZ_CP053981.1|WP_000111385.1|272777_274715_-|1,4-alpha-glucan-branching-protein-GlgB
MSVINCEEVKRDEFHTEKYYESYNIFGAHIVTEDEMRGVRFTVWAPHAKAMSVVGDFNEWDYEQHKMLQVTEEGIWSLFIPHIEEREIYKYAIETMAGDVIFKADPYAVYAEVRPNTASVVFDIKGYEWNDKNWSRKKKKKSVYKEAMTVYELHFGSWKKKEDGTLYSYREMAEELIPYVVEHQFTHIEIMPLVEHPYDRSWGYQGTGYYAATSRFGTPYDLMHFVDECHKYGIGVILDWVPGHFCKDAHGLYLFDGTPTYEYKDKDVQENPVWGTVNFDLGKREVRNFLISNALFWMRYFHIDGFRVDAVANMLYWNKEGQEQSNEHAVSFLRELNEAVFAEDEDFLMTAEDSTAWPLVTAPTYEGGLGFNYKWNMGWMNDVLKYMECAPEYRKYIHDKMTFSLLYTYSENFILPLSHDEVVHGKKSLLNKMPGDYWDKFAQLRLLYGYFFTHPGKKLLFMGGEFGQFDEWKDLEDLDWNLHDFEMHRYMHDYFKELIALYKRSKPLWQLDHSREGFQWIDANNNEQSIFSFIRQGDKQEDALVVICNFTKATYDNYKVGVPDFEYYNEILNSDAEQYGGSGQVNKKRLKTIQEPYHNQTAHVEITIPPFGVSILRPVKTRKGSKKQDGSKTKVRSNVTSRGKR
>NZ_CP053981.1|WP_000053948.1|275183_275789_+|M73-family-metallopeptidase
MSLKQKVGMGVVTATLGLSLTFGGVFAYFSDSETSSNSFQAGTLDLSINPSVIIDVKDLKPGDFIERNFTLENKGTLDIAKVALETSYEVTDAKKNNDGEDLGDHIIVKFLVNDGKPSNPNDDHEILWETKLSQLKTMKPEDVATSLERHNLIDGIKSGETDYLHVLFSFEDNEQDQNTFQGDSLQLNWTFHAKQTPGTEK
>NZ_CP053981.1|WP_000728869.1|275821_280045_+|S8-family-serine-peptidase
MKKKNRFVTGIVTAGVLFSTALPFNVLAENPINQIDSSNAQSLLSKLSKEQRQALQTLDANPGFTISPDINTSSSEPVNIIVEFQTAPVKINELKQKEKGLQAAPENIKARIDQEHEEFQKGLKRLYQFSPSVKSGNFQSVQIKRSYKHAINGVALTLPANTVEELLRIGVVKRIWKDYEVKLNLPKQAEQKAPQKLTDSIPQIGVDKLHNEGITGKGIKIGVLDTGIDYNHPDLKDVYKGYRAKPGEDSSKVDPNSVKGWDFINNDADPMETTYTEWQQSGAPEFDDRGSSFYTAHGTHVAGIVSAQKKNTSDSAVKGVAPDIELYNYRVLGPYGSGDSSGIIAAIDKSISDGMNVINLSLGDDSNNPLDPTSIAVNNAMLSGVVTVVAAGNSGPNPATLGSPGASPFAITVGASDSSISLPKLSGHAGQVQFPNLILFGKNFTDKIEDFKGQSLPIESVGIGTANEFSQKDVKGKIALIARGTLSFDEKIANAKQAGAKAVIIYNNVDGEIPFYIGESTKYIPAFRLPKEDGEKLKAQIEQGNTSFTFDELTYIQTEGDHLADFSSRGPVTSNDDIKPDITAPGVAVLSTVPEYINDPQEGENYDVSYERMQGTSMASPHIAGVAALILQEHPEYSPFDVKASLMNTADDLKEKYSVYEVGAGRIDAYNAVHTETSFKVLDTTKTVVNDEIIEVPEETGSIAFGKFYQKDGEALEQKRNIKVENHNKQEKKEFKTEISYTPASSSINDAIANGVKVSTPETITLDAGKSDEIEAKINVPAGVKQGRYEGYIHITNTKNKEETYQIPFSIRVSEPGIEDAVLSRKSISTDTTKFNPYRESYVHGAFQLNSNLETLDLIVKDSKTNKALGFLGTLNTSGLQTDVYYYLESFFNGKVYPFTNDSAKPIGDEKIDLPEGDYTIEFVGYDKDGKARVKDDYVVIDNTPPEVKLTGLKPGIYELNEENYAVEDGKKALWIKGNVYDSNVDYLKGKGLNITQEANGVMYYDYSPYLHKFLPIDANGDFKIGITPESFKVEGPMNTGVYIFDYATAGPDYPSGVNNYWFIQQGAQYAKASYDKKELYKGDEFTVTLNAKHVKQFVAGEFNVKFLEKNFKFANVKLNPAFEKLLSEKGVTAKVNEPKLEEGSVTVGGTIDDKNFAGLDGDFPFIDVTFKVENDEFYEANAQLESPVFVYWKPGETEPNRMRVLQDQTFSVMSLNSLVEGNIKPGAFLNERGYLDEKFDYTKLGVKVYATDSYRHKFEGSLDKYGYFKLNGLPVNKRDYNLFVEVPGHLTSRLTTKLGTEKDGKLLGQYYYARLDENLAGDVNGDKVIDIKDAEIIASNYGKKGLSVKDGDLNKDGIVDEKDIRFVEKNFLKKGPDASKSQTAAEKSKSGTLADILKKLGLTPKK
>NZ_CP053981.1|WP_000715339.1|280216_281161_-|L-lactate-dehydrogenase
MKKGINRVVLVGTGAVGCSYAYSMINQGVAEEFVLVDVNEAKAEGEAMDLSHAVPFSPSPTKVWSGSYADCKDADLVVITAGLPQKPGETRLDLVEKNTKIFKQIVRGIMDSGFDGIFLIATNPVDILTYVTWKESGLPKERVIGSGTTLDSARFRYMLGDYLDVDPRNVHAYIVGEHGDTELPVWSHATIGVQKLETILANNEQYKQEDLDKIFENVRDAAYHIIERKGATYYGIGMSLLRVTKAILNNENSVLTVSAYLEGQYGEKDAYVGVPAVINREGVREIVELELNEEEKAKFAHSVKVLKETMAPVL
>NZ_CP053981.1|WP_000386685.1|289071_289752_+|MgtC/SapB-family-protein
MDYTDLLIKLGLSAILGFAIGLERELKRKPLGLKTCLVISIISCLLTIVSIKAAYNLPHTDHMNMDPLRLAAQIVSGIGFLGAGVILRRGNDSIAGLTTAAMIWGASGIGIAVGAGFYIEAIFGMCFLMISVELIPLTMKFVGPRSFRQRDIVVKLVVRNMDNIPVVIEEIKEMDIKVKNMKLKTLENGSHYLHLKLCIDQKRHTADVYYALQHLESVQQTEVESM
>NZ_CP053981.1|WP_000842310.1|289847_290843_+|potassium-channel-protein
MKSRPKLVDAFRDSIIFRLICFIVVLTAFSGFLIHILEPSHFTTWFDGIWWSIVTIFTVGYGDFAPHTLIGKLIGIGIILFGTGFCSYYMVLFATDMINKQYMKVKGEEAATSNGHMIIVGWNERAKHVVKQMHILQPNLDIVLIDETLSLLPKPFHHLEFIKGCPHHDQTLLKANITTAHTILITADKEKNESLADTQSILNILTAKGLNPNIHCIAELLTSEQIQNATRAGASEIIEGNKLTSYVFTASLLFPSISGVLFSLYNEISDNKLQLMELPSSCTGQTFANCSYTLLKQNILLLGIKRDEQYMINPVHSFVLIQSDILIVIHH

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Crispr_ID: NZ_CP053981_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053981_3

377279-377401

Orphan

Consensus_repeat	Method
TTAAACAAACGTTTGATTAACTCCCTATTTTTCTTTGTTCAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP053981_3

>merge|NZ_CP053981|3|377279-377401|CRISPRCasFinder
TTAAACAAACGTTTGATTAACTCCCTATTTTTCTTTGTTCACTCTTGAGCTGCAACAATTTCTCCCTACCGAACATATCCCTTAAACAAACGTTTGATTAACTCACTATTTTTCTTTGTTCAC

>NZ_CP053981|3|3|377279-377401|CRISPRCasFinder
TTAAACAAACGTTTGATTAACTCCCTATTTTTCTTTGTTCAC	TCTTGAGCTGCAACAATTTCTCCCTACCGAACATATCCC
TTAAACAAACGTTTGATTAACTCACTATTTTTCTTTGTTCAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053981.1\|WP_001982701.1\|378354_378744_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053981.1\|WP_000601755.1\|373077_374103_-\|methionine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224058
NZ_CP053981.1\|WP_001180555.1\|383430_383616_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053981.1\|WP_000713745.1\|380232_380880_+\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239481
NZ_CP053981.1\|WP_000666170.1\|380935_381949_-\|PTS-sugar-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|379113
NZ_CP053981.1\|WP_127813462.1\|381971_383105_-\|L-lactate-dehydrogenase	unknown	unknown	gnl\|CDD\|133427
NZ_CP053981.1\|WP_000494859.1\|377602_377842_-\|DUF3937-family-protein	unknown	unknown	gnl\|CDD\|372461
NZ_CP053981.1\|WP_000026899.1\|376281_376665_-\|glycine-cleavage-system-protein-GcvH	unknown	unknown	gnl\|CDD\|234918
NZ_CP053981.1\|WP_000359553.1\|372419_373085_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224922
NZ_CP053981.1\|WP_000171583.1\|379068_379260_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053981.1\|WP_000781219.1\|374635_374980_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053981.1\|WP_000640869.1\|375446_375791_-\|DNA-primase	unknown	unknown	gnl\|CDD\|224572
NZ_CP053981.1\|WP_000218967.1\|376706_377072_-\|arsenate-reductase-family-protein	unknown	unknown	gnl\|CDD\|239334
NZ_CP053981.1\|WP_001994499.1\|375134_375443_-\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239245
NZ_CP053981.1\|WP_000929160.1\|369679_370465_-\|Fe-S-cluster-assembly-ATPase-SufC	unknown	unknown	gnl\|CDD\|223473
NZ_CP053981.1\|WP_000826903.1\|379561_380089_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053981.1\|WP_000735107.1\|371583_372396_-\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224381
NZ_CP053981.1\|WP_000525952.1\|379275_379506_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053981.1\|WP_000722404.1\|370704_371511_-\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224381
NZ_CP053981.1\|WP_001002987.1\|383168_383417_-\|spore-coat-protein	unknown	unknown	gnl\|CDD\|377935

Protein	Function_ID	Function_description	E-value
NZ_CP053981.1\|WP_000666170.1\|380935_381949_-\|PTS-sugar-transporter-subunit-IIC	gnl\|CDD\|379113	pfam13303, PTS_EIIC_2, Phosphotransferase system, EIIC. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.	1.06298e-86
NZ_CP053981.1\|WP_000601755.1\|373077_374103_-\|methionine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224058	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism].	3.41006e-176
NZ_CP053981.1\|WP_127813462.1\|381971_383105_-\|L-lactate-dehydrogenase	gnl\|CDD\|133427	cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	0
NZ_CP053981.1\|WP_000494859.1\|377602_377842_-\|DUF3937-family-protein	gnl\|CDD\|372461	pfam13073, DUF3937, Protein of unknown function (DUF3937). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 80 amino acids in length.	3.09211e-28
NZ_CP053981.1\|WP_000026899.1\|376281_376665_-\|glycine-cleavage-system-protein-GcvH	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	5.279e-70
NZ_CP053981.1\|WP_001994499.1\|375134_375443_-\|thioredoxin-family-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	1.74181e-17
NZ_CP053981.1\|WP_000359553.1\|372419_373085_-\|ABC-transporter-permease	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	2.85082e-98
NZ_CP053981.1\|WP_000640869.1\|375446_375791_-\|DNA-primase	gnl\|CDD\|224572	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair].	2.03274e-21
NZ_CP053981.1\|WP_000218967.1\|376706_377072_-\|arsenate-reductase-family-protein	gnl\|CDD\|239334	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.	6.64822e-61
NZ_CP053981.1\|WP_000929160.1\|369679_370465_-\|Fe-S-cluster-assembly-ATPase-SufC	gnl\|CDD\|223473	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones].	8.75164e-150
NZ_CP053981.1\|WP_001002987.1\|383168_383417_-\|spore-coat-protein	gnl\|CDD\|377935	pfam07875, Coat_F, Coat F domain. The Coat F proteins, which contribute to the Bacillales spore coat. It occurs multiple times in the genomes it is found in.	9.62029e-15
NZ_CP053981.1\|WP_000735107.1\|371583_372396_-\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	8.97855e-111
NZ_CP053981.1\|WP_000713745.1\|380232_380880_+\|phosphatase-PAP2-family-protein	gnl\|CDD\|239481	cd03386, PAP2_Aur1_like, PAP2_like proteins, Aur1_like subfamily. Yeast Aur1p or Ipc1p is necessary for the addition of inositol phosphate to ceramide, an essential step in yeast sphingolipid synthesis, and is the target of several antifungal compounds such as aureobasidin.	1.4759e-16
NZ_CP053981.1\|WP_000722404.1\|370704_371511_-\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	1.39287e-111

>NZ_CP053981.1|WP_000218967.1|376706_377072_-|arsenate-reductase-family-protein
MTVTFYSYPKCGTCQKAKKWFEANDVAYEMIHIVENPPSKEDLRNLHEKSELPLKKFFNTSGMRYRELGLKDKLKDASEDEMYELLASDGMLIKRPIVTDGTKVTLGFNEEQFESVWKKYQ
>NZ_CP053981.1|WP_000026899.1|376281_376665_-|glycine-cleavage-system-protein-GcvH
MSIPNNLRYSEEHEWVKTEGNEVVIGITHFAQNELGDIVFVELPEVGATIEADEPFGSVESVKTVSELYAPVSGKVVAVNEELSDQPELVNESPYEGAWMVKVELSDASQVEKLLTAEKYAEMTNQD
>NZ_CP053981.1|WP_000640869.1|375446_375791_-|DNA-primase
MIYVEKVIIVEGTSDRRKIESIIREPVEIVCTNGTIGLSKMDELVDQFFDKEVYVLVDADDAGEKLRKQFRKEFPQAEHIYIDRSYREVATAPSSHLANVLWGADIDVYTEYLR
>NZ_CP053981.1|WP_001994499.1|375134_375443_-|thioredoxin-family-protein
MIEVIDWTGAEATALIENEEKTVLYVYTPMCGTCQLAKKMLTVVEMTIEDLKIGMLDLNYAPHFAKEYGIESVPCLLVFENGTLMKKIYAFHSVEYLYMELK
>NZ_CP053981.1|WP_000781219.1|374635_374980_-|hypothetical-protein
MKLYSLLQSFVNYANGQYHLEPLLRQGEKTVNFRFGDESCSLQISRDYIELLHEERGTEQIVCVGEEDVKQLVNGNVRLQMLMNDGRVQYSGTYRTMLLVESMFHICKPMSVGA
>NZ_CP053981.1|WP_000601755.1|373077_374103_-|methionine-ABC-transporter-ATP-binding-protein
MILLENVKKIYKAKSGDVTAVDNANLKIDKGEIFGVIGYSGAGKSSLIRLFNQLEKPTSGQITIANRVISAITGSELRKARQEIGMIFQHFNLLWSRTVRENIEFPLEIAGVDKAKRRKRVDELIHLVGLEGRGDAYPSQLSGGQKQRVGIARALANNPQVLLCDEATSALDPETTDQILDLLLDINKRLGLTIVLITHEMHVIRKICNRVAVMEKGKIVETGPVLDVFRNPQKDITKRFVQQLTDSEDTNETIESLIEKYPDGKVIRLQFIGEAVERPVLQRLMQRSDIEVSILQGNIAQTNNGSYGSLVVHLNGEETAIQQAIEGIHQDQVELEVIAHG
>NZ_CP053981.1|WP_000359553.1|372419_373085_-|ABC-transporter-permease
MDKLLTNVDWNQMLEATGETLYMTAIAALATFILGLILGLLLFMTAKDNLWENKAVNTAIGAFVNIFRSIPFIILIILLIPFTKILLGTILGASAALPALIIGAAPFYARMVEIALREIDKGVIEASKAMGAKTSTIILKVLIPESLPALVSGITVTTIALVGYTAMAGVVGAGGLGTLAYLEGFQRGNNDVTIVATICVLLVVFFIQWIGDRVTTRIDKR
>NZ_CP053981.1|WP_000735107.1|371583_372396_-|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein
MKKLLLTALISTSIFGLAACGGKDNDEKKLVVGASNVPHAEILEKAKPLLEKKGIELEVKKFQDYVLPNKSLADKDLDANYFQHIPYLEKEIKDKKYDFEVAGKIHLEPIGVYSQKYKSLKELPDGATIIMSNSVADHGRGLAILQKEGILKIKDGVDPVKATPKDIADNPKNLKFKTDIEPGLLPQVYNNKEGDAVLINSNYAIDAKLNPEKDAIAIESNDSPYANVVAVRKGDKDKKEIKALVEVLHSKEIEDFINKEYKGAVVPVKE
>NZ_CP053981.1|WP_000722404.1|370704_371511_-|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein
MKKILLSVVTALSVFTLAACGGKEENKLVVGASNVPHAVILEKAQPILEKKGIKLEIKKFQDYVLPNKALADKEIDANYFQHIPYLDKEIQEKGYKIVNAGKIHLEPMGIYSKKYKSLKDLPDGGTVIMSNNVAERGRMLALLQKGGVIKLKDGVDVVKATVKDVVENPKNLKFKTDVEPGLSPKLYENNEGDALFINSNYAIDAKLNPTKDAISIEGSDSPYANIIAVRKGDEKKKEIKELVEVLHSKEIQDFINKEYKGAVLPVSE
>NZ_CP053981.1|WP_000929160.1|369679_370465_-|Fe-S-cluster-assembly-ATPase-SufC
MAGSTLTVKDLHVSIDGKEILKGVNLEVKGGEIHAIMGPNGTGKSTLSSAIMGHPKYEVTEGSIIIDGEDVLEMEVDERAQAGLFLAMQYPSEISGVTNADFLRSAINARREEGDEISLMKFIRTLDKNMEFLEMDPEMAQRYLNEGFSGGEKKRNEILQLMMIEPKIAILDEIDSGLDIDALKVVSKGINEMRGEEFGCLMITHYQRLLNYITPDFVHVMMNGRIVKSGGPELAQRLEAEGYDWIKKELGIEDETTEQEA
>NZ_CP053981.1|WP_000494859.1|377602_377842_-|DUF3937-family-protein
MFTNKKLIRFGLTLLVCLWVIDFTISYFQTYLESAGIKWVVSETWRTILLDAPESILVILGAIALYDFTKETSPKDASI
>NZ_CP053981.1|WP_001982701.1|378354_378744_-|hypothetical-protein
MLKTIKNTLLFFLCLVVLSGCFTREGTIVGGKVHGGSNSIDGKYKSFTGFATQDMDVKKGESWTFTFEDKTKQGTIKAYVLDSNDNAILEVNSGNSKNNIKVSKDDTYKVKIITEEHGGEFEISWKKEK
>NZ_CP053981.1|WP_000171583.1|379068_379260_-|hypothetical-protein
MTLESLKKNLKVLFVICFLGTIIFTMFDATYNLKEKIIFSLIYLITVPISFFILYKIGKFFIK
>NZ_CP053981.1|WP_000525952.1|379275_379506_-|hypothetical-protein
MGNAEVADKIDKNGFEIGEEASLAKYEAGIDIPIPFTDHDLHLGGLLKISSSGFKVKFPWGPGASPVDTGVEVEIK
>NZ_CP053981.1|WP_000826903.1|379561_380089_-|hypothetical-protein
MKRLSYFLVFILICLASAGCAMDKEGEKLEYNGRALVIGVVGEKPKDTFRNIKFEEMKLEELEKKSKEVDGFLIMKAHFQEASTDQYKNVFSSLKKPVFFIGLQDKSYSIFITKGIEYNSARKDGNAMYTQGFANIGSGEGQQWGIGLSNGGNVEESIHNMYIVVFQTIADYLNR
>NZ_CP053981.1|WP_000713745.1|380232_380880_+|phosphatase-PAP2-family-protein
MKKFKLSSFLPLSYILLLVLVSPLYDVLNKSAVHAVDVTTVVDDWIPFVKAFIIPYLIWFPYLYGALIYYCFADRKQYYVTLSSIILGKLACFSIYYFWQTTVPRPTVVGTDVFSELVRYIYSIDQPVNCFPSIHVLTTFVIMLAAFKRREQHAFEYYILTFFGTLIILSTLFTKQHAFVDAVSGMTLASILYFGVQLLLAKETVRVPVKQNHKM
>NZ_CP053981.1|WP_000666170.1|380935_381949_-|PTS-sugar-transporter-subunit-IIC
MKEYIMSRVFKASAGIAQGIFVSLGIGLLIENIGRIVDIPLLITIGVVAKSLMAPAIGAGIAFMLGANGLVIFSAMVAGAIGAGSISITEAGLIIKTGEPIGALLTATLAVYIGKRLSGKTALDMMLVPFAAILGSGLVGIWLSHNITPVLNAVGAFIKDSSAGSPFIASIVIAVVWGLLLISPASSAALAIALSLDGVAGGAALAGCVAQFIGFSVISAKENNLGGILAQALCTPKVQLPNITKNPMILVPTVVASAIVGPVSALIFQLEAGKEIAGLGLSSLIAPINLISSEGWEVVPAMVITYIVIPVAVSYILYIALKKAGRIHSGDMTVPQS
>NZ_CP053981.1|WP_127813462.1|381971_383105_-|L-lactate-dehydrogenase
MINIFPVVTNMTKMEYNNSQKGQKLCSIFHKVSMVSIVGTSIIRSVRNKRNRLYDQLGEIAMKRHTRKIAIIGTGLVGSSCAYSIVNQGICEELLLIDINHERAVGEAMDLSHCINFTNTRTKVYAGSYEDCKDMDIVIITAGPAPKPGQSRLDTLGASAKIMESVVGGVMESGFDGIFLLASNPVDIITYQVWKLSGLPRNRVIGTGTSLDSSRLRTILSEMLHVDPRSIHGYSLGEHGDSQMVAWSHVTVGGKPILQILEEQKERFGEIDLDEIVEKTAKAGWEIYKRKGTTYYGIGNSLAYIASSIFNDDHRVIAVSAILDGEYGEYDICTGVPAIITRDGIREIVELNLTEDEESRFAKSNDILRDYMKTIGY
>NZ_CP053981.1|WP_001002987.1|383168_383417_-|spore-coat-protein
MNEKDMVNDYLAGLNASLTSYANYIAQSDNEQLHQTLIQIRNQDEMRQRNMYEYAKQKSYYKPAAPANPMIVQQLKSQLSAE
>NZ_CP053981.1|WP_001180555.1|383430_383616_-|hypothetical-protein
MQNLTELEVENLRHLIGGHATIINKLEQYAQTCTDPQLKQMLQKDAQDARNTKQQLMTFLG

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Crispr_ID: NZ_CP053981_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053981_4

2088751-2088859

Orphan

Consensus_repeat	Method
TGTATGATTACCTTCCGCATGAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP053981_4

>merge|NZ_CP053981|4|2088751-2088859|CRISPRCasFinder
TGTATGATTACCTTCCGCATGAGAAGAGAATCCGTTAGCGATAGTCGCGGTTCCTTCTGCATGTGCTGCTTCGCCTAAAGCGATTGTATGTTTACCTTCCGCATGAGAA

>NZ_CP053981|4|4|2088751-2088859|CRISPRCasFinder
TGTATGATTACCTTCCGCATGAGAA	GAGAATCCGTTAGCGATAGTCGCGGTTCCTTCTGCATGTGCTGCTTCGCCTAAAGCGAT
TGTATGTTTACCTTCCGCATGAGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053981.1\|WP_000003393.1\|2080742_2082569_+\|oligoendopeptidase-F	unknown	unknown	gnl\|CDD\|341071
NZ_CP053981.1\|WP_000673194.1\|2086347_2087145_+\|NAD-kinase	unknown	unknown	gnl\|CDD\|235317
NZ_CP053981.1\|WP_000932918.1\|2095672_2096770_+\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133005
NZ_CP053981.1\|WP_000654717.1\|2090447_2091608_-\|rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033
NZ_CP053981.1\|WP_001271183.1\|2097667_2098354_+\|streptomycin-biosynthesis-protein-StrF	unknown	unknown	gnl\|CDD\|379345
NZ_CP053981.1\|WP_000872717.1\|2089632_2090373_-\|bis(5'-nucleosyl)-tetraphosphatase-PrpE	unknown	unknown	gnl\|CDD\|184187
NZ_CP053981.1\|WP_001994556.1\|2091726_2092653_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|366154
NZ_CP053981.1\|WP_001180009.1\|2085288_2085660_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053981.1\|WP_000043381.1\|2083984_2084383_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|381281
NZ_CP053981.1\|WP_001294612.1\|2092666_2093419_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_CP053981.1\|WP_000191105.1\|2084563_2085142_-\|CYTH-domain-containing-protein	unknown	unknown	gnl\|CDD\|143627
NZ_CP053981.1\|WP_002051510.1\|2082688_2082862_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053981.1\|WP_000651527.1\|2098368_2099049_+\|streptomycin-biosynthesis-protein-StrF	unknown	unknown	gnl\|CDD\|379345
NZ_CP053981.1\|WP_000612274.1\|2079447_2080692_+\|competence-protein	unknown	unknown	gnl\|CDD\|226875
NZ_CP053981.1\|WP_000360638.1\|2083091_2083985_-\|DsbA-family-protein	unknown	unknown	gnl\|CDD\|372699
NZ_CP053981.1\|WP_000444380.1\|2093633_2094479_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|377550
NZ_CP053981.1\|WP_001079116.1\|2087160_2088054_+\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NZ_CP053981.1\|WP_001078427.1\|2096981_2097671_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369778
NZ_CP053981.1\|WP_000069735.1\|2094601_2095507_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375999
NZ_CP053981.1\|WP_001081482.1\|2085690_2086329_+\|GTP-pyrophosphokinase-family-protein	unknown	unknown	gnl\|CDD\|225232

Protein	Function_ID	Function_description	E-value
NZ_CP053981.1\|WP_000003393.1\|2080742_2082569_+\|oligoendopeptidase-F	gnl\|CDD\|341071	cd09608, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF). Peptidase family M3B oligopeptidase F (PepF; Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and includes oligoendopeptidase F from Lactococcus lactis. This enzyme hydrolyzes peptides containing between 7 and 17 amino acids with fairly broad specificity. The PepF gene is duplicated in L. lactis on the plasmid that bears it, while a shortened second copy is found in Bacillus subtilis. Most bacterial PepFs are cytoplasmic endopeptidases; however, the Bacillus amyloliquefaciens PepF oligopeptidase is a secreted protein and may facilitate the process of sporulation. Specifically, the yjbG gene encoding the homolog of the PepF1 and PepF2 oligoendopeptidases of Lactococcus lactis has been identified in Bacillus subtilis as an inhibitor of sporulation initiation when over-expressed from a multicopy plasmid. This PepF family includes Streptococcus agalactiae PepB, a group B streptococcal oligopeptidase which has been shown to degrade a variety of bioactive peptides as well as the synthetic collagen-like substrate N-(3-[2-furyl]acryloyl)-Leu-Gly- Pro-Ala in vitro.	0
NZ_CP053981.1\|WP_000673194.1\|2086347_2087145_+\|NAD-kinase	gnl\|CDD\|235317	PRK04885, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional.	0
NZ_CP053981.1\|WP_000932918.1\|2095672_2096770_+\|glycosyltransferase-family-2-protein	gnl\|CDD\|133005	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.	9.60011e-55
NZ_CP053981.1\|WP_000654717.1\|2090447_2091608_-\|rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	1.52178e-99
NZ_CP053981.1\|WP_001271183.1\|2097667_2098354_+\|streptomycin-biosynthesis-protein-StrF	gnl\|CDD\|379345	pfam13712, Glyco_tranf_2_5, Glycosyltransferase like family. Members of this family of prokaryotic proteins include putative glucosyltransferases, which are involved in bacterial capsule biosynthesis.	4.25249e-108
NZ_CP053981.1\|WP_001994556.1\|2091726_2092653_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	1.2498e-25
NZ_CP053981.1\|WP_001294612.1\|2092666_2093419_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	6.63146e-19
NZ_CP053981.1\|WP_000043381.1\|2083984_2084383_-\|hypothetical-protein	gnl\|CDD\|381281	cd14772, TrHb2_Bs-trHb-like_O, Truncated hemoglobins, group 2 (O); Bacillus subtilis TrHb like. The M- and S families exhibit the canonical secondary structure of hemoglobins, a 3-over-3 alpha-helical sandwich structure (3/3 Mb-fold), built by eight alpha-helical segments. Truncated hemoglobins (TrHbs, 2/2Hb, or 2/2 globins) or the T family globins adopt a 2-on-2 alpha-helical sandwich structure, resulting from extensive and complex modifications of the canonical 3-on-3 alpha-helical sandwich that are distributed throughout the whole protein molecule. TrHbs are classified into three main groups based on their structural properties and named after Mycobacterium sp. genes glbN, glbO, and glbP: TrHb1s (N), TrHb2s (O) and TrHb3s (P). TrHb2's belonging to this group include monomeric Bacillus subtilis trHb (Bs-trHb), which exhibits an extremely high oxygen affinity, and a dimeric TrHb2 from the thermophilic aerobic spore forming bacterium Geobacillus stearothermophilus(Gs-trHb).	1.17037e-69
NZ_CP053981.1\|WP_000191105.1\|2084563_2085142_-\|CYTH-domain-containing-protein	gnl\|CDD\|143627	cd07762, CYTH-like_Pase_1, Uncharacterized subgroup 1 of the CYTH-like superfamily. Enzymes belonging to the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily hydrolyze triphosphate-containing substrates, require metal cations as cofactors, and have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB) and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions. Proteins of this subgroup are of bacterial origin and have not been characterized.	1.94434e-83
NZ_CP053981.1\|WP_000872717.1\|2089632_2090373_-\|bis(5'-nucleosyl)-tetraphosphatase-PrpE	gnl\|CDD\|184187	PRK13625, PRK13625, bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional.	0
NZ_CP053981.1\|WP_000651527.1\|2098368_2099049_+\|streptomycin-biosynthesis-protein-StrF	gnl\|CDD\|379345	pfam13712, Glyco_tranf_2_5, Glycosyltransferase like family. Members of this family of prokaryotic proteins include putative glucosyltransferases, which are involved in bacterial capsule biosynthesis.	7.1131e-109
NZ_CP053981.1\|WP_000612274.1\|2079447_2080692_+\|competence-protein	gnl\|CDD\|226875	COG4469, CoiA, Competence protein CoiA-like family, contains a predicted nuclease domain [General function prediction only].	2.34429e-57
NZ_CP053981.1\|WP_000360638.1\|2083091_2083985_-\|DsbA-family-protein	gnl\|CDD\|372699	pfam13743, Thioredoxin_5, Thioredoxin.	5.36453e-93
NZ_CP053981.1\|WP_000444380.1\|2093633_2094479_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|377550	pfam05711, TylF, Macrocin-O-methyltransferase (TylF). This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the swine industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex. The structure of one representative sequence from this family, NovP, shows it to be an S-adenosyl-l-methionine-dependent O-methyltransferase that catalyzes the penultimate step in the biosynthesis of the aminocoumarin antibiotic novobiocin. Specifically, it methylates at 4-OH of the noviose moiety, and the resultant methoxy group is important for the potency of the mature antibiotic. It is likely that the key structural features of NovP are common to the rest of the family and include: a helical 'lid' region that gates access to the co-substrate binding pocket and an active centre that contains a 3-Asp putative metal binding site. A further conserved Asp probably acts as the general base that initiates the reaction by de-protonating the 4-OH group of the noviose unit.	1.59865e-154
NZ_CP053981.1\|WP_001079116.1\|2087160_2088054_+\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	3.88119e-102
NZ_CP053981.1\|WP_001078427.1\|2096981_2097671_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369778	pfam08242, Methyltransf_12, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	3.57676e-18
NZ_CP053981.1\|WP_000069735.1\|2094601_2095507_-\|hypothetical-protein	gnl\|CDD\|375999	pfam18573, BclA_C, BclA C-terminal domain. This is the C-terminal domain of BclA (Bacillus collagen-like protein of anthracis) which is expressed on spores of Bacillus species. Trimers of the C-terminal domain (CTD) form the tips of the spore's hair-like nap and are the immunodominant target of vertebrate antibodies and drive trimerization. Structure analysis indicate the C-terminal region of the peptide folding into an all-beta structure with a jelly-fold topology, similar to the first human complement C1q, a member of the tumor necrosis factor (TNF)-like family. The C-terminal globular domain has been shown to be located on the exterior of the exosporium, and therefore is critical in determining the immunogenicity of the spore in a mammalian host.	2.97711e-18
NZ_CP053981.1\|WP_001081482.1\|2085690_2086329_+\|GTP-pyrophosphokinase-family-protein	gnl\|CDD\|225232	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only].	1.66713e-95

>NZ_CP053981.1|WP_001079116.1|2087160_2088054_+|RluA-family-pseudouridine-synthase
MNRFTLKWDIESAEEGTLVREFLKTKGISKAALTDIKFQGGAIEVNGQHASVRHQLQVGEELRIFFPVEERSEGMIAEDIPLCIVYEDDAVLVINKEANMSTIPSREHPSGSVANALLSHYDKQYLASTVHIVTRLDRDTSGLMLIAKNRFVHHLLSKQHQQKAVKRTYEAIVHGEMVEREGTIDAPIGRKSDSIIERTVCEEGQRAVTHFRVIDSANHKTHVSLELDTGRTHQIRVHMAHIGHPLLGDNLYGGKRDEMKRQALHSTSLTFYHPILEKEMSFTAMIPSDMQEVLRQT
>NZ_CP053981.1|WP_000673194.1|2086347_2087145_+|NAD-kinase
MKFTIMSKGDQSSDTLASTMKEYLLDFGFIMDEQEPDIVISVGGDGTLLYAFHRYYNRLDETAFVGVHTGHLGFYADWLPTEVEKLVIAIAKTPFQVVEYPLLEVIIRYMNGSKESQYLAMNEATVKSAEGTLVTEVEIRGEYFETFRGDGLCISTPSGSTAYNKALGGAIIHPSIEAIQIAEMASINNRVFRTVGSPLVLPKHHTCVLKPTAGMNLQITVDHLTMVHQDVKSIQYRVANEKVRFVRFRPFPFWKRVRDSFVADK
>NZ_CP053981.1|WP_001081482.1|2085690_2086329_+|GTP-pyrophosphokinase-family-protein
MNRNWEEFLAPYHQAVAELKVKLKGMRTQFAMLTEHSPIEFVTGRVKSVASIIDKAEKRNVPLDRLREDMQDIAGLRMMCQFVDEIKPVVEYLRKRNDFEIVEERDYVTQKKDSGYRSYHVVISYPVQTIQGEQKVLVEIQIRTLAMNFWATIEHSLNYKYSGRFPEDIKIRLQRAAEAAFLLDEEMSSIRLEIQEAQKAFSRKQETKDSES
>NZ_CP053981.1|WP_001180009.1|2085288_2085660_+|hypothetical-protein
MQNKIQVKSVEKRENALIFCAENSEIEVKGLSARNHVLVDSDNLSFLYILENESSFIYVSIPHTCWEAMHEAMNNDVVMFVRVNDIEMELEGLKEEVEYLVENIEGNANYGEELVTAVEKVFL
>NZ_CP053981.1|WP_000191105.1|2084563_2085142_-|CYTH-domain-containing-protein
MTQEIEIEFKNIVTEEEFHALCKSFSIEVFTKQVNHYFETPNFSLKEAGSALRIRHKGETYTLTLKQPAEVGLLETHQVVTENEAKMMMETNVIISGAVMNQLCKLQIPVSALTYMGSLTTERAETLFEGGTLVFDHSFYYNHDDYEIEFEVQDEETGKAAFIHLLKQHNIPIRHTNNKVKRFFLAKQNKAR
>NZ_CP053981.1|WP_000043381.1|2083984_2084383_-|hypothetical-protein
MSKQPMTPFEAIGGEQCIAILVDTFYSYVSKHPDLSPIFPDDLTETARKQKQFLTQYLGGPNLYTEEHGHPMLRARHLPFEITPKRAEAWLSCMEQAMDDTGVHGHIREFVFERLALTAQHMVNTPNETGEI
>NZ_CP053981.1|WP_000360638.1|2083091_2083985_-|DsbA-family-protein
MDKQEAKHINMPSPSACEHKSVEAYLFIDPLCKDCWEIEPFIIKLWLEYGKYFSIRHIVTGKVDGTNASSHKWNKPANIRFVWEKTTSLHGFSCDGKVHMQEASSTPYLVSMAIKAAELQGRKAGSKFLRKLQEYIFLENVSNPDCELLLACAKDSDIDVEEFKKDLYSASAKKAFQCDLKFTNEMHITEIPSLVFFHANSDEEGIKIAGTYSYDVYVQLLKELVKCEIEPEPLPPLEVLLEATQFISSKEVAFIYDCSKQEIERELKKLQLKRKVQMIDVKCERYWKWIAKEKDLV
>NZ_CP053981.1|WP_002051510.1|2082688_2082862_-|hypothetical-protein
MKKTYILLIILAVIVSFFLYILSLLQAFPKIIAFPLLFGVIVIALSYFNHKKRFKGF
>NZ_CP053981.1|WP_000003393.1|2080742_2082569_+|oligoendopeptidase-F
MSEQNTAKTLPDRNEIEESSTWRLEDIFQTDTEWEKEFQAIKELLPKLTEFKGKLGDSANNLLEALQYEDEISMRLGKLYTYAHMRYDQDTTNSVYQALNDRATNLYSQVSSSTAYIVPEILSISEDTLQTFLKENRDLSVYEHALEEITRQRPHVLSEAEEALLAEASEVMSASSNTFGMLNNADLKFPSIKGEDGEEVEITHGRYIQFLESDDRRVREDAFKAVYETYGKYKNTFASTLSGAVKRNNFNARVRKYDSARQAALSNNNIPEAVYDQLIESVNDNLHLLHRYIDIRKRALGLDELHMYDLYTPLVPEVKMNVKYEEAQDMLLKSLHVLGDEYVDILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLFTLAHEFGHSVHSYYTRKTQPHVYGDYSIFVAEVASTCNEALLNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQTMFAEFEHIIHKKVQEGHAVTPDMLTEIYYDLNKKYFGDALVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVERYINEFLKAGSSDYPIEVLKKAGVDMASPEPVKEALQVFEEKLNELEALLFEEK
>NZ_CP053981.1|WP_000612274.1|2079447_2080692_+|competence-protein
MIPIFIAKRENGEKIHLLDHHDEELLHHMRKRESFFCIACGKEVLMRLGKQKRWHFAHKKVDSCLAFYEAESTYHMYGKELLYRWFKRQNVHVEIEHYLPEIQQRPDIFIERAGRKIAIEYQCANLSIEQLCTRTYSYWQAGIQVIWIIGGNQLKKHSAYWMKFSSIMAFSLQSYPQPLLIFFCSKQKSFMKCTFITSFSTSIAFSHIIYLPIETTTFEMLFSPVPFQREVLNREWKRRKDYFRQNALPIWNYNHKSLLRLLYQCKCNPANFPSEIGVPLPSSFAFQTNLFIWQAFLYMKCIGELAVGDCISLKYVCSYIKKYTKRRMLPYFSQHIWKVAVTEYMTFLCYAGVLYKVGMYTYRKIRDAVPLKTGGEIMKHDEICLAHALSLFEAKFNMRGGKGDIIKTDREGIT
>NZ_CP053981.1|WP_000872717.1|2089632_2090373_-|bis(5'-nucleosyl)-tetraphosphatase-PrpE
MKYDIIGDIHGCLQEFQNLTEKLGYNWSSGLPVHPDQRKLAFVGDITDRGPHSLRMIEIVWELVIHKKEAYYAPGNHCNKLYRFFLGRNVTVAHGLETTVAEYEALPSHKQNMIKEKFITLYEQSPLYHVLDEKRLLVCHAGIRQDYIGRQDKKVQTFVLYGDITGEKHADGSPVRRDWAKEYKGTAWIVYGHTPVKEPRFVNHTVNIDTGAVFGGRLTALRYPEMETVSVPSSLPFVPEKFRPIS
>NZ_CP053981.1|WP_000654717.1|2090447_2091608_-|rod-shape-determining-protein-RodA
MKDPNSQYQIDYVLLFILFAIGTVSCFAIASAQVSLPPFLQNVNFVLKQIQWYFIGFIAIGIIMIIDFDRYQKIAWYLYSFALVLLIGLEFQVPGAITIKGATAWYRLPGIGNFQPSEIMKLFLIIVTGRIIANHNEKYFYRTIHDDFLLLGKICATSLPPLLLIAKEPDLGNTMVISAMLAAMILVSGIRWRFIFGLVSGIFATAVTLTYIFFTHTKFFKAHILQEYQLNRFYGWLAPYKYDAQGYQLRQAFLATGSGEMQGKGWENGQVYFPEPHTDFIFTNVAEQFGFLGASIIITLFFLLIFRMIHIALESNDPFGSYICAGTIGMFTFQVFQNIGMTIGLLPITGITLPLMSYGGSSLLTYMIAIGFVLNVRSRTKIFMFN
>NZ_CP053981.1|WP_001994556.1|2091726_2092653_-|glycosyltransferase-family-2-protein
MTSEKDLPLVSILIPTYNRPHYFKIALESALAQTYSNIEIIIGDDSTNDETETLIHEQYLPHYKNVTYIRNTPPLGQFHNDLMLLEKSNGEYINFLMDDDVFYKHKIQKMMDYFEQDTNKALALVTSYRVRIDDHGDLIGDAHPTQRLYSEDTPLNGMFLGDWMLKEGHNIIGEPTTTLFRKELLTEPFGTLKERQYSCSVDMASWISLLSKGDAVYISEPLSQFRYHAGQQIHNKLLQGCEDFTHLVITAKEYGFLQNTTDYRTALLSAYKWCKSSLKYYLHQLDIFPDAHVRLSHCLVIIIKELNN
>NZ_CP053981.1|WP_001294612.1|2092666_2093419_-|class-I-SAM-dependent-methyltransferase
MSEPNKEITLLPPPELVQYVGGDFKEVGKEFLTHFIQIGALKSNEKVLDVGCGVGRMAVPLMNYLTDDGAYYGFDLFKDGITWCQNNIATIRNNFHFEHVDIYNQFYNPEGKEDASQYRFPYEDETFDFIFLTSVFTHLLPKELEHYLSEIVRVLKKDGRCFITFFLINPESSYYLNAGLSTLGFYHQIENCYVVNKDIPNFAVAYPETNIYSLLNKYGLEAINKPYYGLWCGRHEYTSYQDIVITKKRV
>NZ_CP053981.1|WP_000444380.1|2093633_2094479_-|class-I-SAM-dependent-methyltransferase
MESKSAVQLYLELLKKTILFEIWLEYEAYLPASLHISKELEFEPVTVPLPLFIKQYAENHNLKIVKPNVSKSERHDGMDWPRAAHSMIGRERMNQLQEAMETVVRENIEGDFIETGVWRGGSCIFMNGFLQANNITDRNVWVADSFEGLPAPNLEQYPKDYGDYLHTFDYLRVSLEQVQENFKKYDLLNDQVKFLKGWFKDTLPTAPIEKIAIARLDGDMYESTMDGLVNLYDKVSKGGYIIIDDYGLPPCAEAVTDFRNHRNLKAPITKIDVFGVYWRKE
>NZ_CP053981.1|WP_000069735.1|2094601_2095507_-|hypothetical-protein
MSNNNYSNGLNPDESLSASAFDPNLVGPTLPPIPPFTLPTGPTGPTGPTGPTGPTVPTGPTGPTGPTGPTGPTGPTGPTGPTGPTGPTGPTGDTGTTGPTGPTGDTGATGPTGPTGPTGPTGDTGTTGPTGPTGDTGATGLTGPTGATGLTGPTGPTGPTGPTGPSGLGLPAGLYAFNSGGISLDLGINDPVPFNTVGSQFGTAISQLDADTFVISETGFYKITVIVYTAAVSLLGGLTIQVNGIPVPGTGASLISLGAPIVIQAITQITTTPSLVEVIVTGLGLSLALGTSASIIIEKVA
>NZ_CP053981.1|WP_000932918.1|2095672_2096770_+|glycosyltransferase-family-2-protein
MLNKQGITISLCMIVRDEEKTIARCLDSVEKIVDEIIVVDTGSIDRTKEIVEKYTSNIYDFQWIDDFAAARNFSFSKATQEYILWLDADDVLLEDAQEALKLLKREIDPKIDAVSMPYHLAMDSNGKPLYCTKRNRLVKREKQFQWFGKVHEYLAISGEVFSSNVAITHKKEKKVTDRNLKIFQNTVAAGEELSPRDLFYYANESTDNQKYDDAILLYETFLNQDEGWYEEKIYACGKLGDCYAKLGMWEKAIESCVKSFRYDVPRGENCTRIGYIYMEQEKYNEAIFWFKLATEVPMATESPFHSPASYTWLPYLQMCICYSRLGEQDKAYYYNELAASYVPNNAAIEYNRKYFRGVFDKPYKV
>NZ_CP053981.1|WP_001078427.1|2096981_2097671_+|class-I-SAM-dependent-methyltransferase
MNREKSSLYEEKSEHYYNAANPNLLKHIKKEWKEVLDIGCSGGALGAAIKENGTRVSGIEAFPEAAEKAKERLDHVILGDIEKIDLPYEEGQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASIPNVAHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYVISKVDRVYVDHKMYEPLIEELYGICKKYRLGSGFMAETVVFQYIIEAEKSQL
>NZ_CP053981.1|WP_001271183.1|2097667_2098354_+|streptomycin-biosynthesis-protein-StrF
MSAADKTILFVTCINDRKLYANCVRHILQLLVPPGYIVQFMPIRNAKSMTSGYNQAISHPAKYKVYLHQDVFIINRAFLYGLLQLFEEHEHLGMIGMVGAQYVPPTGVWNEGRGIVGKVIGYMNDLFYMASLEQPYHESKTFIPVECIDGLLMATQYDVPWREDLFDGFDFYDVSQSFEFKKAGYTVGVPVQRDAWCIHYHFDVNMTNYEKYRKIFVEHYMSDVNKEE
>NZ_CP053981.1|WP_000651527.1|2098368_2099049_+|streptomycin-biosynthesis-protein-StrF
MKDHTILVVVCVNNEELFKQCESQIRNIFVPPGYVVQIFPIRDAQSMASAYNRALSYPAKYKVYIHQDTYLINRDMFSTLISLFKENEKLGLIGVAGAQFLPNNGIWWEGKNLVGKVIEYRRRNYQLLNLDQVFYGNQPFLSVQAIDGLFMATQYDIPWREDLFQGFHFYDVSQSLEFQRAGYLIGIPNQANLWCIHYNGDEFDADTYEKYRKVFVEHYKDILSPS

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1199325 : 1207702

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000625683.1\|1199325_1200633_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	6.4e-21	25.3
WP_001170542.1\|1200721_1201441_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	G8EYA2	Synechococcus_phage	5.2e-49	44.3
WP_000278823.1\|1201433_1201688_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_000666777.1\|1201684_1202368_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_000055577.1\|1202351_1204571_+	phosphoribosylformylglycinamidine synthase II	A6N228	Microbacterium_phage	1.7e-162	41.2
WP_000879029.1\|1204555_1205971_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	7.3e-55	35.4
WP_001262436.1\|1206077_1207118_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	9.4e-68	46.4
WP_000088592.1\|1207114_1207702_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.2e-27	37.1

DBSCAN-SWA_2

2756328 : 2765647

Bacillus_phage(71.43%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000755546.1\|2756328_2757591_+	C40 family peptidase	A0A1V0DZX6	Clostridioides_phage	6.8e-12	32.0
WP_001194301.1\|2757689_2758454_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_000453763.1\|2758694_2760455_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	4.4e-267	95.9
WP_171856546.1\|2760516_2761221_+	response regulator	W8CYM9	Bacillus_phage	5.0e-121	93.6
WP_001231497.1\|2761217_2762291_+	membrane protein	W8CYF6	Bacillus_phage	1.2e-169	87.4
WP_000823554.1\|2762315_2762903_-	DUF3139 domain-containing protein	NA	NA	NA	NA
WP_000818985.1\|2763099_2763819_+	3-ketoacyl-ACP reductase	W8CYX9	Bacillus_phage	5.9e-61	100.0
WP_000103838.1\|2763968_2764640_+	O-methyltransferase	W8CYT3	Bacillus_phage	6.5e-62	86.9
WP_001258513.1\|2764774_2765647_+	aminoglycoside 6-adenylyltransferase	A0A1X9I6F2	Streptococcus_phage	2.7e-68	46.6

DBSCAN-SWA_3

3543913 : 3551119

Geobacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001065246.1\|3543913_3545281_-	lytic polysaccharide monooxygenase	A0A0K1Y848	Apis_mellifera_filamentous_virus	9.6e-20	38.1
WP_000720567.1\|3545718_3546237_-	DNA topology modulation protein	A0A097BYE2	Leuconostoc_phage	9.5e-45	47.3
WP_001093444.1\|3546446_3546833_-	DUF2809 domain-containing protein	NA	NA	NA	NA
WP_000655496.1\|3546898_3547606_-	class I SAM-dependent methyltransferase	A0A1X9I6N4	Streptococcus_phage	1.0e-17	27.0
WP_000994639.1\|3547627_3547981_-	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA
WP_000288934.1\|3547994_3548399_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000714651.1\|3548646_3550032_+	S-layer homology domain-containing protein	Q0H255	Geobacillus_phage	1.1e-76	59.5
WP_000820167.1\|3550034_3550247_+	DUF3006 domain-containing protein	Q0H256	Geobacillus_phage	7.3e-12	54.4
WP_000540634.1\|3550312_3551119_-	N-acetylmuramoyl-L-alanine amidase	D2XR33	Bacillus_phage	6.5e-109	69.7

DBSCAN-SWA_4

5084725 : 5145801

Bacillus_phage(33.33%)

tRNA,bacteriocin,integrase,coat,protease

attL 5103171:5103190|attR 5139181:5139200

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000125362.1\|5084725_5085865_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	2.5e-82	42.1
WP_000354030.1\|5085877_5086930_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_000138162.1\|5086949_5087150_-	DUF2905 domain-containing protein	NA	NA	NA	NA
WP_000344460.1\|5087146_5088148_-	Holliday junction branch migration DNA helicase RuvB	A0A127AWE7	Bacillus_phage	1.2e-08	27.2
WP_000464508.1\|5088153_5088771_-	Holliday junction DNA helicase RuvA	NA	NA	NA	NA
WP_000823597.1\|5088959_5089904_+	iron-hydroxamate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_000871185.1\|5089916_5090447_-	BofC C-terminal domain-containing protein	NA	NA	NA	NA
WP_001079930.1\|5090567_5091497_-	DMT family transporter	NA	NA	NA	NA
WP_000426920.1\|5091564_5091885_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000721241.1\|5092330_5092765_+	hypothetical protein	NA	NA	NA	NA
WP_001093533.1\|5092798_5093443_-	YhcN/YlaJ family sporulation lipoprotein	NA	NA	NA	NA
WP_000690816.1\|5093621_5095469_-\|coat	spore coat assembly protein ExsA	NA	NA	NA	NA
WP_000025291.1\|5095843_5096950_-	quinolinate synthase NadA	NA	NA	NA	NA
WP_001092246.1\|5096980_5097814_-	carboxylating nicotinate-nucleotide diphosphorylase	NA	NA	NA	NA
WP_001138561.1\|5097833_5099363_-	L-aspartate oxidase	NA	NA	NA	NA
WP_000973794.1\|5099515_5100655_+	IscS subfamily cysteine desulfurase	A0A1X7QGF3	Faustovirus	7.7e-31	28.9
WP_000812272.1\|5100657_5101200_+	transcription repressor NadR	NA	NA	NA	NA
WP_000510428.1\|5101281_5101929_+	MOSC domain-containing protein	NA	NA	NA	NA
WP_000621721.1\|5102010_5102862_-	prephenate dehydratase	NA	NA	NA	NA
WP_001026353.1\|5102958_5104875_-	ABC transporter permease	NA	NA	NA	NA
5103171:5103190	attL	NA	NA	NA	NA
WP_001011372.1\|5104924_5106847_-	ABC transporter permease	NA	NA	NA	NA
WP_000114531.1\|5106821_5107598_-	ABC transporter ATP-binding protein	W5SAS9	Pithovirus	1.2e-19	31.0
WP_000865391.1\|5107691_5108774_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_000276720.1\|5108763_5109471_-	response regulator transcription factor	NA	NA	NA	NA
WP_000496111.1\|5109610_5110897_-	GTPase ObgE	NA	NA	NA	NA
WP_001037006.1\|5110896_5111445_-	Spo0B domain-containing protein	NA	NA	NA	NA
WP_000944957.1\|5111508_5111799_-	50S ribosomal protein L27	NA	NA	NA	NA
WP_001973720.1\|5111802_5112147_-\|protease	ribosomal-processing cysteine protease Prp	NA	NA	NA	NA
WP_000270907.1\|5112158_5112467_-	50S ribosomal protein L21	NA	NA	NA	NA
WP_000855457.1\|5112636_5114025_-	Rne/Rng family ribonuclease	NA	NA	NA	NA
WP_000599073.1\|5114092_5114953_-	stage IV sporulation protein SpoIVFB	NA	NA	NA	NA
WP_000797461.1\|5114945_5115692_-	stage IV sporulation protein SpoIVFA	NA	NA	NA	NA
WP_000503310.1\|5115825_5116623_-	septum site-determining protein MinD	NA	NA	NA	NA
WP_000391517.1\|5116625_5117312_-	septum site-determining protein MinC	NA	NA	NA	NA
WP_000975753.1\|5117347_5117893_-	rod shape-determining protein MreD	NA	NA	NA	NA
WP_001135493.1\|5117907_5118759_-	rod shape-determining protein MreC	NA	NA	NA	NA
WP_000466737.1\|5118800_5119820_-	rod shape-determining protein MreB	NA	NA	NA	NA
WP_000366809.1\|5120254_5121676_+	hypothetical protein	NA	NA	NA	NA
WP_000907107.1\|5121635_5124677_+	hypothetical protein	NA	NA	NA	NA
WP_000913003.1\|5124706_5126470_+\|integrase	site-specific integrase	NA	NA	NA	NA
WP_001087615.1\|5126456_5127209_+	hypothetical protein	NA	NA	NA	NA
WP_000081956.1\|5128765_5130133_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_000051680.1\|5130160_5132353_-	peptidase domain-containing ABC transporter	W8CYL7	Bacillus_phage	6.9e-44	27.7
WP_000849670.1\|5132562_5132739_-\|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	NA	NA	NA	NA
WP_001089676.1\|5132761_5132968_-\|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	NA	NA	NA	NA
WP_001212906.1\|5133876_5134998_+	DUF11 domain-containing protein	NA	NA	NA	NA
WP_000682196.1\|5135404_5136706_-	collagen-like protein	NA	NA	NA	NA
WP_001013372.1\|5137741_5138368_-	DNA repair protein RadC	NA	NA	NA	NA
WP_001226277.1\|5138414_5138990_-	septum formation inhibitor Maf	NA	NA	NA	NA
WP_000360976.1\|5139211_5140174_-	hypothetical protein	NA	NA	NA	NA
5139181:5139200	attR	NA	NA	NA	NA
WP_000582048.1\|5140339_5141641_-	bifunctional tetrahydrofolate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_000072246.1\|5141734_5144380_-\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	8.0e-164	42.9
WP_000366997.1\|5144775_5145801_-\|coat	spore coat protein YsxE	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP053982

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CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP053981

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

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Click the colored protein region to show detailed information

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection