CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP053987	Achromobacter denitrificans strain FDAARGOS_786 chromosome, complete genome	4 crisprs	csa3,WYL,DEDDh,RT,DinG	0	0	3	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP053987_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053987_1

2979531-2979636

Orphan

Consensus_repeat	Method
TTTTTGTCTTGGGGCGGCCCTGCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP053987_1

>merge|NZ_CP053987|1|2979531-2979636|CRISPRCasFinder
TTTTTGTCTTGGGGCGGCCCTGCGAAAGAAAATGGCCCCCACGCTGCGCGCTTCGCTTGCTTGCTGCCCCCCAAGGGGGCGTTTTTGTCTTGGGGCGGCCCTGCGA

>NZ_CP053987|1|1|2979531-2979636|CRISPRCasFinder
TTTTTGTCTTGGGGCGGCCCTGCGA	AAGAAAATGGCCCCCACGCTGCGCGCTTCGCTTGCTTGCTGCCCCCCAAGGGGGCG
TTTTTGTCTTGGGGCGGCCCTGCGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053987.1\|WP_062681294.1\|2970939_2971443_-\|nitrous-oxide-reductase-accessory-protein-NosL	unknown	unknown	gnl\|CDD\|226764
NZ_CP053987.1\|WP_062681287.1\|2981375_2982239_+\|undecaprenyl-diphosphate-phosphatase	unknown	unknown	gnl\|CDD\|234712
NZ_CP053987.1\|WP_062684055.1\|2985119_2986574_+\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
NZ_CP053987.1\|WP_062681290.1\|2974466_2976383_-\|TAT-dependent-nitrous-oxide-reductase	unknown	unknown	gnl\|CDD\|235082
NZ_CP053987.1\|WP_062684058.1\|2989540_2990806_+\|aspartate-kinase	unknown	unknown	gnl\|CDD\|235843
NZ_CP053987.1\|WP_062684054.1\|2984158_2984842_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP053987.1\|WP_062681293.1\|2971439_2972270_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|372253
NZ_CP053987.1\|WP_042794482.1\|2983514_2984024_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|182734
NZ_CP053987.1\|WP_062681296.1\|2968946_2969732_+\|inositol-monophosphatase	unknown	unknown	gnl\|CDD\|238817
NZ_CP053987.1\|WP_075873352.1\|2968047_2968815_-\|RNA-methyltransferase	unknown	unknown	gnl\|CDD\|223639
NZ_CP053987.1\|WP_062681288.1\|2979773_2981357_+\|TerC-family-protein	unknown	unknown	gnl\|CDD\|223930
NZ_CP053987.1\|WP_062684056.1\|2987272_2988238_+\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-alpha	unknown	unknown	gnl\|CDD\|235580
NZ_CP053987.1\|WP_082775736.1\|2976499_2978758_-\|regulatory-protein-NosR	unknown	unknown	gnl\|CDD\|226417
NZ_CP053987.1\|WP_062681289.1\|2979041_2979491_+\|azurin	unknown	unknown	gnl\|CDD\|259989
NZ_CP053987.1\|WP_062681292.1\|2972266_2973166_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP053987.1\|WP_062681291.1\|2973162_2974461_-\|nitrous-oxide-reductase-family-maturation-protein-NosD	unknown	unknown	gnl\|CDD\|275079
NZ_CP053987.1\|WP_062684103.1\|2986594_2987236_+\|DNA-3-methyladenine-glycosylase-2-family-protein	unknown	unknown	gnl\|CDD\|223200
NZ_CP053987.1\|WP_062681295.1\|2969897_2970896_-\|FAD:protein-FMN-transferase	unknown	unknown	gnl\|CDD\|224394
NZ_CP053987.1\|WP_062684053.1\|2982754_2983522_-\|UDP-2,3-diacylglucosamine-diphosphatase	unknown	unknown	gnl\|CDD\|235420
NZ_CP053987.1\|WP_062684057.1\|2988299_2989364_+\|tRNA-lysidine(34)-synthetase-TilS	unknown	unknown	gnl\|CDD\|238950

Protein	Function_ID	Function_description	E-value
NZ_CP053987.1\|WP_062681294.1\|2970939_2971443_-\|nitrous-oxide-reductase-accessory-protein-NosL	gnl\|CDD\|226764	COG4314, NosL, Predicted lipoprotein involved in nitrous oxide reduction [Energy production and conversion].	2.73892e-62
NZ_CP053987.1\|WP_062681287.1\|2981375_2982239_+\|undecaprenyl-diphosphate-phosphatase	gnl\|CDD\|234712	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase.	3.87666e-112
NZ_CP053987.1\|WP_062684055.1\|2985119_2986574_+\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
NZ_CP053987.1\|WP_062681290.1\|2974466_2976383_-\|TAT-dependent-nitrous-oxide-reductase	gnl\|CDD\|235082	PRK02888, PRK02888, nitrous-oxide reductase; Validated.	0
NZ_CP053987.1\|WP_062684058.1\|2989540_2990806_+\|aspartate-kinase	gnl\|CDD\|235843	PRK06635, PRK06635, aspartate kinase; Reviewed.	0
NZ_CP053987.1\|WP_062684054.1\|2984158_2984842_-\|hypothetical-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.04161e-11
NZ_CP053987.1\|WP_062681293.1\|2971439_2972270_-\|ABC-transporter-permease	gnl\|CDD\|372253	pfam12679, ABC2_membrane_2, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family.	6.67026e-40
NZ_CP053987.1\|WP_042794482.1\|2983514_2984024_-\|peptidylprolyl-isomerase	gnl\|CDD\|182734	PRK10791, PRK10791, peptidylprolyl isomerase B.	6.09611e-89
NZ_CP053987.1\|WP_062681296.1\|2968946_2969732_+\|inositol-monophosphatase	gnl\|CDD\|238817	cd01639, IMPase, IMPase, inositol monophosphatase and related domains. A family of Mg++ dependent phosphatases, inhibited by lithium, many of which may act on inositol monophosphate substrate. They dephosphorylate inositol phosphate to generate inositol, which may be recycled into inositol lipids; in eukaryotes IMPase plays a vital role in intracellular signaling. IMPase is one of the proposed targets of Li+ therapy in manic-depressive illness. This family contains some bacterial members of the inositol monophosphatase family classified as SuhB-like. E. coli SuhB has been suggested to participate in posstranscriptional control of gene expression, and its inositol monophosphatase activity doesn't appear to be sufficient for its cellular function. It has been proposed, that SuhB plays a role in the biosynthesis of phosphatidylinositol in mycobacteria.	3.90488e-113
NZ_CP053987.1\|WP_075873352.1\|2968047_2968815_-\|RNA-methyltransferase	gnl\|CDD\|223639	COG0565, LasT, rRNA methylase [Translation, ribosomal structure and biogenesis].	8.30416e-75
NZ_CP053987.1\|WP_062681288.1\|2979773_2981357_+\|TerC-family-protein	gnl\|CDD\|223930	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism].	1.73378e-97
NZ_CP053987.1\|WP_062684056.1\|2987272_2988238_+\|acetyl-CoA-carboxylase-carboxyltransferase-subunit-alpha	gnl\|CDD\|235580	PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase subunit alpha; Validated.	0
NZ_CP053987.1\|WP_082775736.1\|2976499_2978758_-\|regulatory-protein-NosR	gnl\|CDD\|226417	COG3901, NosR, Regulator of nitric oxide reductase transcription [Transcription].	1.49555e-157
NZ_CP053987.1\|WP_062681289.1\|2979041_2979491_+\|azurin	gnl\|CDD\|259989	cd13922, Azurin, Azurin is a redox partner for enzymes such as nitrite reductase or arsenite oxidase. Azurin is a bacterial blue copper-binding protein. It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The copper of Azurin is tetrahedrally coordinated by a cysteine, 2 histidines, and a methionine residue. The electron transfer reactions are carried out with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form. Azurin can function as a tumor suppressor; it forms a complex with p53 that triggers apoptosis in various human cancer cells.	1.38549e-78
NZ_CP053987.1\|WP_062681292.1\|2972266_2973166_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	5.90895e-89
NZ_CP053987.1\|WP_062681291.1\|2973162_2974461_-\|nitrous-oxide-reductase-family-maturation-protein-NosD	gnl\|CDD\|275079	TIGR04247, nitrous_oxide_maturation_protein_NosD, nitrous oxide reductase family maturation protein NosD. Members of this family include NosD, a repetitive periplasmic protein required for the maturation of the copper-containing enzyme nitrous-oxide reductase. NosD appears to be part of a complex with NosF (an ABC transporter family ATP-binding protein) and NosY (a six-helix transmembrane protein in the ABC-2 permease family). However, NosDFY-like complexes appear to occur also in species whose copper requiring enzymes are something other than nitrous-oxide reductase.	0
NZ_CP053987.1\|WP_062684103.1\|2986594_2987236_+\|DNA-3-methyladenine-glycosylase-2-family-protein	gnl\|CDD\|223200	COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair].	5.03077e-54
NZ_CP053987.1\|WP_062681295.1\|2969897_2970896_-\|FAD:protein-FMN-transferase	gnl\|CDD\|224394	COG1477, ApbE, Membrane-associated lipoprotein involved in thiamine biosynthesis [Coenzyme metabolism].	4.98328e-69
NZ_CP053987.1\|WP_062684053.1\|2982754_2983522_-\|UDP-2,3-diacylglucosamine-diphosphatase	gnl\|CDD\|235420	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional.	2.1808e-113
NZ_CP053987.1\|WP_062684057.1\|2988299_2989364_+\|tRNA-lysidine(34)-synthetase-TilS	gnl\|CDD\|238950	cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.	1.39935e-62

>NZ_CP053987.1|WP_062681289.1|2979041_2979491_+|azurin
MLAKATLAIVLSAASLPVLAAQCEATIESNDAMQYNLKEMVVDKSCKQFTVHLKHVGKMAKVAMGHNWVLTKEADKQGVATDGMNAGLAQDYVKAGDTRVIAHTKVIGGGESDSVTFDVSKLTPGEAYAYFCSFPGHWAMMKGTLKLSN
>NZ_CP053987.1|WP_082775736.1|2976499_2978758_-|regulatory-protein-NosR
MQGSTAAGLRFTRFIQAALLILLLFGTAIGIAQAQRLPDFLASTPIGELFPGADRVDAPAGKPMVAKAYAGGRQVGVVYLTSDVVNTRGYSSKPIDVLVALANDGRIMGAKLVEHHEPIVLIGIPQAKVDHFISGYVGLNFVDSPPRHGAPPPVDIISGATVTLMVIGDSITRSAIAVARAHGIDKTAAPAQQAAPVAARVVDDKQDTPQSWQALLDAGAVRNLRLTPEDVDRAFRESGRADAAAGGDGKSDDDTFIDLYAALVSVPAIGRSLLGDTEWQRLKERLKPGQQAVLVAGNGSYSFKGSGYVRGGIFDRIEVIQDEGSFRFRDRNHQRLADVVAEGAPAFREVALFVVPDDAILDPVAPWRLQLMVQRVLSVKDKAFVTFDLGYDLPSAYTRPADGAQPPAATPATAAANSAPAAAQAAAEEPAPALWKQIWRGKSGQVAVLTVALLVLVGIFFFQDQLTSRPLLHDRLRLAFLAFALFWIGWYGQAQLSIVNVLTFFSALRSDFRWEYFLMDPLVFILWCATAISMVFWNRGAFCGWLCPFGALQELTNRVAKRLGVRQVKISHGVNQRLSTLKYVIFLLLFGFSLYDLALAEQLSEIEPFKTAIILRFVRYWPFVVFAVALLAAGLFVERFFCRYLCPLGAALAIPARLRIFNWLRRYRDCGNPCQRCNLECPVQAIDPTGEINPNECIQCLHCQMLYHHDQKCPHLIQKKAKRERRRPAAEEPVEQPIVIHRAPNPNPQSEA
>NZ_CP053987.1|WP_062681290.1|2974466_2976383_-|TAT-dependent-nitrous-oxide-reductase
MSDKNPEKAGLTRRSFLGTAAITGAAGLVAGAQIPTAHGKDAKAGANGVLGHVGPGELDEYYAFNSSGQSGEVRVLGLPSMRELVRIPVFNHCSATGWGRTNESRKILTEGLTPETREYLKDKGGVFPNGDAHHPHLSFTDRTYDGRYLFINDKANNRVARIRLDVMKTDKITELPNVSGVHGLRPQRYPRTGYVFANGEHISPLPNDGKVLDDPKKNFFAVYTALDGDTMKVAWQVLVDGNLDNGDADYQGKYSFSTCYNSEKGVTVEEMSANEQDWVVVFNIKRIEEAVKSGDYKMMGGVPVIDGRHGSKYTRYIPVPNSPHGCNAAPDGIHVVLNGKLSPTVTVLDVRTLDDLFDDKIKPRDCVVAEPQLGLGPLHTAFDGRGNAYTTLFIDSQMVKWNIDKAKRAYKGEKVDPIIQKLDVHYQPGHNHTTMGETREADGKWLVSLNKFSKDRFLNVGPLKPENDQLIDISGDEMKLVHDGPSFAEPHDMCLVHRSKVHPLSVWKRDDPMWEEARQMAKKDGVSLDDAAKVVRDGNKVRVYMMAVAPMFSLKKFEVNQGDEVTVVVTNMEVIEDLTHGFTLEGHGIAMEIGPQATSSVTFKADRPGVYWYYCQWFCHALHMEMSGQMIVHPKKTA
>NZ_CP053987.1|WP_062681291.1|2973162_2974461_-|nitrous-oxide-reductase-family-maturation-protein-NosD
MRLIAMLTSGGRGAARAALAAFALALSGAAVAAVHAVAPGADLAQAIAAAEAGDVLKLAPGTYAGGIVIDKPLTLEGPEDRSAVIAGTRQGRTVWVKAADVSLRSLTVTRSGLSLSEMDAGIFLDREAHRARVEGNDILDNLVGVHVWGPSDALVRGNRIVGNKELRVAERGNGVTLWNTPGTRILDNDISAGRDGIFVNTSKQNTFNDNRFHDLRYAVHYMYTNDSEISGNVATGTDVAYAIMYSHRLIVRGNVALDSREQGLMLNYANHSRITDNSVDRAGKCVFIYNANRNVFQDNRFANCEIGVHFTAGSEGNQIAGNAFINNRNQVKYVGTRTLDWSVDGRGNYWSDNTAFDLDGDGIADTAYRPNDVVDQLLWRAPAARILLNSPSITIVRWAQSQFPAILPGGVIDSAPLMQPPQPAADRPKESP
>NZ_CP053987.1|WP_062681292.1|2972266_2973166_-|ABC-transporter-ATP-binding-protein
MNTDLVTLSGVSKHYGAQHAVDGLELQLREGECVALAGHNGAGKSTLIKLILGLIRPTRGRVALFGHDAHSPAAARMRNRIGYLPETVALHPSMTGEETLAFYARLKRQPLSGNPALLEKVGIAGAARRRVGGYSKGMRQRLALAQALLGEPRVLLFDEPTTGLDPASRLMFYDIVHELRASGATILLSTHALSELAGHADRIVVMKAGRKIADGAMSALRRSTGLPIRIRLTLASADTPPPGAWRRIEAGRYELACQEHDKIAAIRSIGAISSDIHDLDIQVPGLDDIYAHLLEREDV
>NZ_CP053987.1|WP_062681293.1|2971439_2972270_-|ABC-transporter-permease
MNAVATIIGKEIRDGLRNRWVLATALLLAALALALGLLGSSPTGTVKAEPLTVTVVSLSSLSIFLVPLIAMLLAYDAVVGEVDRGTMALLLSYPVSRWQVLVGKFIGHLAILALATGAGYGSAGLALQWAYGGLDASAWQPFALLIGASVLLGASFLAMGYLISTLVRERATAAGIALGVWLFFVVIYDMALLGVLAADQGRHVSPGMLNALLLFNPSDVYRLLNLTGFENISLYAGMAGLSDQASLPLAALIAALLLWIAVPFLLATAAFRRKQL
>NZ_CP053987.1|WP_062681294.1|2970939_2971443_-|nitrous-oxide-reductase-accessory-protein-NosL
MRRLRLALALAALLTAAACGNGAGPDAPPPAPQPVTLESVGHYCGMALNEHNGPKGQLFLKGRPAPVWFSSIKQVFAYTLLPEEPKTISAIYVNDMATAGADGAPDPAAWIDARQAFYVIEGRFIGGMGAEDAMPFSQRASAETFAQAHGGRVVTFAEVPEAYVFAQ
>NZ_CP053987.1|WP_062681295.1|2969897_2970896_-|FAD:protein-FMN-transferase
MNPTRRRFIGIAAAASALALAPFPARRAAASIAPTVWQGVALGADAELRLYHPDPQAAQRLIAQSLQELRRLEAVFSLYRDDSALSRLNRQGYLDNPPADLLRLLSVSQRYGRLTGGAFDPTVQPLWKLYAGHFAQPGASRDGPPALAVTQALARVSYEDVALESDRITLQRPGMGITLNGIAQGYITDRVTELLKEAGLERALVDMGEIQGMDTRDAPADWQVGLADPQNPAALLATARLRNQALATSGGYGTAIDAEGRFTHLFDPRTGRARPLYRSVSVMAPNATMADALSTAFSYMPLDAADVIVREHGLRAWFALPDGGLAVQGAES
>NZ_CP053987.1|WP_062681296.1|2968946_2969732_+|inositol-monophosphatase
MHPMLNIAIKAARRAGTIINRASMDLERLSVARKGPRDYVTEVDRAAEESIVETLRAAYPDHAVLGEEFGLQGPDQAEFQWIIDPLDGTTNFIHGLPNYAVSIALTQRGQVTQAVIYDPSRNELFTASRGSGTFLNDRRVRVSGRTRYHEALLGAHWPNAGDLEQGSARFRQMAEGSTGVRRLGATVLDLAYVACGRLDGFCGVGLKPWDLAAGSLMVLEAGGLVSDFDGEQEWMDTGNVLAASPKIFTQMLSALNPPSAA
>NZ_CP053987.1|WP_075873352.1|2968047_2968815_-|RNA-methyltransferase
MTQAFSRVRFIMVNPSHPGNVGSAARAIKTMGFSELVLVDPKFPDVTSQPEAVALASGAADVLEGAQVYGTLEEALEPVTLAFALTARVRDLGPPPCDIRQAAELARDHLADTAEGIAAVVLGTERAGLTNAQIALCHRICHIPANPEYSSLNVAQALQLAAWELRYALLVAQGAALLPASTAQEPAPGAAPASSAAVQAFLAHWEEALIGVQFLDPAHPKKLMPRMRHLYSRLSLTRDEVDMMRGVCTAMLKKK
>NZ_CP053987.1|WP_062681288.1|2979773_2981357_+|TerC-family-protein
MEWLLDPTAWVGLLTLVVLEIVLGIDNLIFIAILADKLPPAQRDRARIMGLSLALIMRLGLLSVMSWLVTLTAPLFSIGPLSFSGRDLILMIGGLFLLFKGTMELHERLEGSQHGGSSGPRVYASFWVIVTQIVVLDAVFSLDSVITAVGMVDHLAIMMIAVIIAIGIMLLASKPLTRFVNAHPTVVVLCLGFLLMIGFSLLAEAFGFKVPKGYLYAAIGFSVAIEALNQVARRNLLKLDARRPMRERTASAVLRMLGKRPPADEPDLPSADGPSVPAFGVEERNMVSGVLTLAERSIRSIMTPRTDVSWINIDDDPETIRAQLTEAPHSFFPVCRGSLDEVLGIGRAKDLVADLITEGRVRRNRLRDPIIVHESIGILRLMDTLKRSRGQLVLVADEFGAIEGLVTPIDVFEAIAGEFPDEDELPDIVADGDNTWKIDGAADLHHVEQVLETEGLVDDAQDFSTLAGYLLSRFGHLPKPGDVCEYEIHHDHFRFEVLEMDGRRIALVRVEKRPQELHADDASLAND
>NZ_CP053987.1|WP_062681287.1|2981375_2982239_+|undecaprenyl-diphosphate-phosphatase
MTENALYLIKAFVLGIIEGLTEFIPVSSTGHLILVGDWINFESSQGKVFEVVIQLGSILAVMWVFRARLLRLVRGTLTGVPSEVAFTRNLIIAFLPAAVIGAIFIKSIKSVFYHPSVVVVTLVLGGLIMLYVERKTHHTPGDQPGAADDTASDERATARTLEQISWKQALGVGVAQCLAMIPGTSRSGATIIGGMIAGIQRKTATEFSFFLAMPTMLGAAVYDMYKNMELLTQHDLAGIAVGFVAAFLSAMVVVRAVLRFVANHTYRVFAWYRIVFGAVVAAWIFTR
>NZ_CP053987.1|WP_062684053.1|2982754_2983522_-|UDP-2,3-diacylglucosamine-diphosphatase
MNKISLPGPVWLASDLHLGPATPATSEAFLAFLEAAREEAAALLLPGDIFDAWIGDDVIRAAPPWLATALTALRDTAARIPVWLGRGNRDFLIGEELAQALGARLLPEPALLETDFGPILLTHGDEYCTDDAAYQQFRQMVRNPQWQAEFLAKTIPERLAMAQQARGESQAANQTKSMEIMDVNAGAVEQAFRDTGVRVLIHGHTHRPARHVLAVDGRKCERWVLPDWDCDHANPPRGGWLVIDRDGLEFYDLET
>NZ_CP053987.1|WP_042794482.1|2983514_2984024_-|peptidylprolyl-isomerase
MSTNPRVKLQTNQGDMVITLDAAKAPKTVENFLTYVKEGFYNGTVFHRVIDGFMIQGGGFEPGMKQKQTHAPIENEANNGLKNDKYTLAMARTSDPHSATAQFFINVSNNDFLNFTAPTPNGWGYAVFGTVTEGTDVVDKIKGVKTGNKGFHQNVPNEDVIIEKAEVLE
>NZ_CP053987.1|WP_062684054.1|2984158_2984842_-|hypothetical-protein
MTIKPRFRVALLALALASAPVGASFAQSMAGGGGENPNASRTTLDPIPPEGGWDSLAKLLEAAKPGVDTRLTPSASQITTHIERLLNRGDDEEALALIEKRLAETKDQRGTDVQLMFQHARALAALHRTNEAIDVYNEMTTRFPELPEPWNNLAALYAGRGELERAQDALQMALRADPNYAAARANLGDLQLLQALRTYKKAASDGVPGMQDKAREVETMLKDKQGK
>NZ_CP053987.1|WP_062684055.1|2985119_2986574_+|cysteine--tRNA-ligase
MLQIYNTLSRTKEPFKPTQAGQVRMYVCGMTVYDFCHLGHARMLVSFDVVQRWLRASGLAVDYVRNITDIDDKIIRRAVETGRRIGEVTEFYIDAMHADERALGVQTPDREPRATQYVGEMLDIIGKLEQNGLAYQADDGDVNYAVRGFPGYGKLSGKTLDDLRAGERVAVGSAKRDPLDFVLWKSAKAEEPADTKWESPYGLGRPGWHIECSAMSKSLLGLPLDIHGGGPDLKFPHHENEIAQTEGAFGGALANIWMHCGPLMVDSDKMSKSLGNFRTIRQTVALDDPSADQSTYRVNPREAEMVRFFIVRNHYRSPQNYTPDNLVDAQNALDRLYQALQNVPADDQGIDWNEPQAQAFKAAMDDDFNSSGAVAALFELASEANRGKSARSAGQMKALAALLGLLQQDPAAYFQSPTRYSAAAMEQGERRALDADAIQSLIDARAAAKAARNFAEADRIRAELRDAGIELDDKPGGLTQWRRA
>NZ_CP053987.1|WP_062684103.1|2986594_2987236_+|DNA-3-methyladenine-glycosylase-2-family-protein
MSTDLEIPKPEYWEAAVAHLMRRDRILKKIIPQHPEVWLTSRGTPFVTLARAIIGQQISPKAADAVWTKFIDAVGKRPTPVAVLRVGLDGLRAAGLSQRKAEYVVDLAVHFGERRVHPEKWAAMDDEAVISELVAIRGIGRWTAEMFLIFNLQRPDVLPLDDPGLLKAISLHYFSGEPVSRFEAREVSLAWQPWRTVATWYLWRSLEPTPVQY
>NZ_CP053987.1|WP_062684056.1|2987272_2988238_+|acetyl-CoA-carboxylase-carboxyltransferase-subunit-alpha
MRNTFLEFEQPLAELENKIEQLRYVQADSAVDISDEIGRLQQKSQTLAKEIYAKLTPWQTALVARHPQRPYTLDYVREMFTDFHELHGDRMYADDQSIVGGLARFNGTPCMVIGHQKGRDTKERAARNFGMPRPEGYRKALRLMRLAEKFGIPVFTFVDTPGAYPGIGAEERGQSEAIGHNLYAMAELKVPVICTIIGEGGSGGALAIAVGNAVLMLQYATYAVISPEGCASILWRSAEKAPEAAEALAIIAPRLKDLGLVDRVVNEPVGGAHRDPRVMARLLRRALGDALRQLQGMTPEQLVEQRVQRLLSYGAFQEVRA
>NZ_CP053987.1|WP_062684057.1|2988299_2989364_+|tRNA-lysidine(34)-synthetase-TilS
MTAPDAPGTPEPTGADPSPALPLSPELASALRRALLALPERPARIAVAVSGGADSAMLAVHAAAVARELGIGIALFHVHHGLQASADEWGRQVRVLAERLALPLSEARVDVALGAGKGIEAAARDARYAALARLAGEHGIRHVLLAHHRNDQAETVLLRLLRGTGLVGMAAMKPVSARDGVVYLRPWLELGREAILRAADDVEAACGWRPVQDPTNADPRYTRAALRELLAPALDARWPGWRAIVARHARHMAQAAEILDEVAREDFAALDPSPDGASFSLKAWRGLSEARQAHVLRHWLERNGARMPTDARMQDLLRQLRGLHSLGHDRQLRVEQAGHVIRCHRGRVWVEPRA
>NZ_CP053987.1|WP_062684058.1|2989540_2990806_+|aspartate-kinase
MSLIVHKYGGTSMGSVERIKNVARRVAKWHAAGHQVVVVPSAMAGETNRLLGLAREISPQPDNRELDMIAATGEQASSGLLAIALQAEGVPARSYAGWQVPVRTDSSFTKARISSIDDARIRGDLDAGRVVIVTGFQGVDPEGHITTLGRGGSDTSAVAVAAAIKADECLIYTDVDGVYTTDPRVVPEARRMAVVSFEEMLEMASLGSKVLQIRSVEFAGKYRVPVRVLSSLTDPLIPLDEEMVSGTLITFEEDEKMEAAVVSGIAFSRDEAKITLLAVPDKPGIAFSILGPVAAANIDVDMIVQNQSVAGTTDFSFTVNRNEFARAVDLLKREVIPAVGARELSTDEKVAKVSIVGIGMRSHVGVASLMFQTLSQEGINIQMISTSEIKTSVIIDDKYMELGVRALHKAFGLDQAPAEKA

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Crispr_ID: NZ_CP053987_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053987_2

5530137-5530256

Orphan

Consensus_repeat	Method
TTTTCATCGCCGGGCCGCCCCAAGATGAAAACGCCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP053987_2

>merge|NZ_CP053987|2|5530137-5530256|CRISPRCasFinder
TTTTCATCGCCGGGCCGCCCCAAGATGAAAACGCCCCCTTGGGGGGCAGCGAGCCCGCGCAGCGGGCGCAGCGTGGGGGCATCTTTTCATCGCCGGGCCGCCCCAAGATGAAAACGCCCC

>NZ_CP053987|2|2|5530137-5530256|CRISPRCasFinder
TTTTCATCGCCGGGCCGCCCCAAGATGAAAACGCCCC	CTTGGGGGGCAGCGAGCCCGCGCAGCGGGCGCAGCGTGGGGGCATC
TTTTCATCGCCGGGCCGCCCCAAGATGAAAACGCCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053987.1\|WP_062684363.1\|5528843_5529608_+\|YdcF-family-protein	unknown	unknown	gnl\|CDD\|99750
NZ_CP053987.1\|WP_062684405.1\|5521163_5522627_+\|ribonuclease-G	unknown	unknown	gnl\|CDD\|183285
NZ_CP053987.1\|WP_062684406.1\|5522833_5523535_+\|DUF3053-domain-containing-protein	unknown	unknown	gnl\|CDD\|371434
NZ_CP053987.1\|WP_087881394.1\|5532070_5532796_-\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|213023
NZ_CP053987.1\|WP_062684367.1\|5533026_5534136_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340846
NZ_CP053987.1\|WP_062684369.1\|5534881_5535730_-\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|213026
NZ_CP053987.1\|WP_062684365.1\|5530935_5532096_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NZ_CP053987.1\|WP_075873312.1\|5529653_5529923_+\|YkgJ-family-cysteine-cluster-protein	unknown	unknown	gnl\|CDD\|308985
NZ_CP053987.1\|WP_062684372.1\|5540433_5541333_+\|lipid-A-hydroxylase-LpxO	unknown	unknown	gnl\|CDD\|380241
NZ_CP053987.1\|WP_062684360.1\|5524014_5525820_-\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|235131
NZ_CP053987.1\|WP_062684361.1\|5525980_5527756_-\|lipid-A-export-permease/ATP-binding-protein-MsbA	unknown	unknown	gnl\|CDD\|131258
NZ_CP053987.1\|WP_062684368.1\|5534132_5534885_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133005
NZ_CP053987.1\|WP_062684359.1\|5523661_5523892_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053987.1\|WP_062684373.1\|5541379_5542675_-\|AAA-associated-domain-containing-protein	unknown	unknown	gnl\|CDD\|224041
NZ_CP053987.1\|WP_082775767.1\|5511227_5513186_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226654
NZ_CP053987.1\|WP_062682049.1\|5513236_5514592_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_CP053987.1\|WP_062684364.1\|5530348_5530939_+\|ATP-phosphoribosyltransferase-regulatory-subunit	unknown	unknown	gnl\|CDD\|238396
NZ_CP053987.1\|WP_062684370.1\|5535726_5536827_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NZ_CP053987.1\|WP_062684362.1\|5527859_5528831_+\|heptosyltransferase	unknown	unknown	gnl\|CDD\|366450
NZ_CP053987.1\|WP_062684371.1\|5536826_5540318_-\|DNA-polymerase-III-subunit-alpha	unknown	unknown	gnl\|CDD\|235554

Protein	Function_ID	Function_description	E-value
NZ_CP053987.1\|WP_062684363.1\|5528843_5529608_+\|YdcF-family-protein	gnl\|CDD\|99750	cd06259, YdcF-like, YdcF-like. YdcF-like is a large family of mainly bacterial proteins, with a few members found in fungi, plants, and archaea. Escherichia coli YdcF has been shown to bind S-adenosyl-L-methionine (AdoMet), but a biochemical function has not been idenitified. The family also includes Escherichia coli sanA and Salmonella typhimurium sfiX, which are involved in vancomycin resistance; sfiX may also be involved in murein synthesis.	8.80844e-42
NZ_CP053987.1\|WP_062684405.1\|5521163_5522627_+\|ribonuclease-G	gnl\|CDD\|183285	PRK11712, PRK11712, ribonuclease G; Provisional.	0
NZ_CP053987.1\|WP_062684406.1\|5522833_5523535_+\|DUF3053-domain-containing-protein	gnl\|CDD\|371434	pfam11254, DUF3053, Protein of unknown function (DUF3053). Some members in this family of proteins are annotated as the membrane protein YiaF. No function is currently known.	3.80953e-73
NZ_CP053987.1\|WP_087881394.1\|5532070_5532796_-\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|213023	cd10918, CE4_NodB_like_5s_6s, Putative catalytic NodB homology domain of PgaB, IcaB, and similar proteins which consist of a deformed (beta/alpha)8 barrel fold with 5- or 6-strands. This family belongs to the large and functionally diverse carbohydrate esterase 4 (CE4) superfamily, whose members show strong sequence similarity with some variability due to their distinct carbohydrate substrates. It includes bacterial poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, hemin storage system HmsF protein in gram-negative species, intercellular adhesion proteins IcaB, and many uncharacterized prokaryotic polysaccharide deacetylases. It also includes a putative polysaccharide deacetylase YxkH encoded by the Bacillus subtilis yxkH gene, which is one of six polysaccharide deacetylase gene homologs present in the Bacillus subtilis genome. Sequence comparison shows all family members contain a conserved domain similar to the catalytic NodB homology domain of rhizobial NodB-like proteins, which consists of a deformed (beta/alpha)8 barrel fold with 6 or 7 strands. However, in this family, most proteins have 5 strands and some have 6 strands. Moreover, long insertions are found in many family members, whose function remains unknown.	2.05329e-58
NZ_CP053987.1\|WP_062684367.1\|5533026_5534136_-\|glycosyltransferase	gnl\|CDD\|340846	cd03819, GT4_WavL-like, Vibrio cholerae WavL and similar sequences. This family is most closely related to the GT4 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.	1.06416e-60
NZ_CP053987.1\|WP_062684369.1\|5534881_5535730_-\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|213026	cd10969, CE4_Ecf1_like_5s, Putative catalytic NodB homology domain of a hypothetical protein Ecf1 from Escherichia coli and similar proteins. This family contains a hypothetical protein Ecf1 from Escherichia coli and its prokaryotic homologs. Although their biochemical properties remain to be determined, members in this family contain a conserved domain with a 5-stranded beta/alpha barrel, which is similar to the catalytic NodB homology domain of rhizobial NodB-like proteins, belonging to the larger carbohydrate esterase 4 (CE4) superfamily.	9.24959e-86
NZ_CP053987.1\|WP_062684365.1\|5530935_5532096_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	5.57987e-41
NZ_CP053987.1\|WP_075873312.1\|5529653_5529923_+\|YkgJ-family-cysteine-cluster-protein	gnl\|CDD\|308985	pfam03692, CxxCxxCC, Putative zinc- or iron-chelating domain. This family of proteins contains 8 conserved cysteines. It has in the past been annotated as being one of the complex of proteins of the flagellar Fli complex. However this was due to a mis-annotation of the original Salmonella LT2 Genbank entry of 'fliB'. With all its conserved cysteines it is possibly a domain that chelates iron or zinc ions.	6.73714e-06
NZ_CP053987.1\|WP_062684372.1\|5540433_5541333_+\|lipid-A-hydroxylase-LpxO	gnl\|CDD\|380241	NF033391, lipid_A_LpxO, lipid A hydroxylase LpxO. Members of this family are LpxO, an enzyme that modifies one of the lipid chains in lipid A by hydroxylation, with resulting changes in resistance to the host immune response and to the antibiotic colistin. This family, as built, includes LpxO1 from Pseudomonas aeruginosa, but not its paralog LpxO2.	0
NZ_CP053987.1\|WP_062684360.1\|5524014_5525820_-\|cation:proton-antiporter	gnl\|CDD\|235131	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional.	0
NZ_CP053987.1\|WP_062684361.1\|5525980_5527756_-\|lipid-A-export-permease/ATP-binding-protein-MsbA	gnl\|CDD\|131258	TIGR02203, Lipid_A_export_ATP-binding/permease_protein_msbA., lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other].	0
NZ_CP053987.1\|WP_062684368.1\|5534132_5534885_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133005	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.	6.6342e-109
NZ_CP053987.1\|WP_062684373.1\|5541379_5542675_-\|AAA-associated-domain-containing-protein	gnl\|CDD\|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	3.03718e-106
NZ_CP053987.1\|WP_082775767.1\|5511227_5513186_+\|sensor-histidine-kinase	gnl\|CDD\|226654	COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms].	2.86728e-180
NZ_CP053987.1\|WP_062682049.1\|5513236_5514592_+\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	0
NZ_CP053987.1\|WP_062684364.1\|5530348_5530939_+\|ATP-phosphoribosyltransferase-regulatory-subunit	gnl\|CDD\|238396	cd00773, HisRS-like_core, Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.	1.57707e-24
NZ_CP053987.1\|WP_062684370.1\|5535726_5536827_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	5.86635e-67
NZ_CP053987.1\|WP_062684362.1\|5527859_5528831_+\|heptosyltransferase	gnl\|CDD\|366450	pfam01075, Glyco_transf_9, Glycosyltransferase family 9 (heptosyltransferase). Members of this family belong to glycosyltransferase family 9. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. All of these enzymes transfer heptose to the lipopolysaccharide core.	2.71709e-47
NZ_CP053987.1\|WP_062684371.1\|5536826_5540318_-\|DNA-polymerase-III-subunit-alpha	gnl\|CDD\|235554	PRK05673, dnaE, DNA polymerase III subunit alpha; Validated.	0

>NZ_CP053987.1|WP_075873312.1|5529653_5529923_+|YkgJ-family-cysteine-cluster-protein
MNVQACRPDCGACCIAPSISSPIPGMPDGKPAGVRCAQLDEENRCRIFGHPERPAVCGSLPPSLEMCGDSAGEAMSRLTWLEKATAVSP
>NZ_CP053987.1|WP_062684363.1|5528843_5529608_+|YdcF-family-protein
MPFSSYLANLIIPYNLCMTLVVIGLALGWFRLRKTGGVLIGTGLLWALFWSLPATSLWLGGALESRYPHLPPADSPTADAIVVLGGNTANGRANWFLPYDRDTAVVRVDTAAQLYLAGRAPKVLLSGGALEGDVSEARGMAYAIRQQGVPESALILENSSRTTYENATLTEDQLKARGIDKVLLVTSALHMPRAMAAFSKQGVQVIAAPAPPQIVPPTDGSLPLWLPDQRTFDASRSIIKEYAGLFVYWLRGWV
>NZ_CP053987.1|WP_062684362.1|5527859_5528831_+|heptosyltransferase
MSDISCLYVRLPNWVGDVCMSLPSLRALQASGLPLVICARPWARDLLDGVAKQDFIPMRGKVGPDRAAVSAHRRSLGALGRRARGLLLPDSLSSALVFRLAGLPSAGYRDDGRSFLLRWPVSKPDDSLHAVQSWHYLTRQALTRWGLPSGPAEPGPTLDLPLTAAHQGAAEQALEAAGLASGRFVLIAPTATGLHKGKIKVWPGFDTLTRALQAQGHTVVMCPPPAETEEARRNAPTALLLPPLSLGAFAALTARAALVICNDSGVSHVAAAAAARELTLFGVTRPGRTGPWSPRAVCVGSENAWPSVEEVVQQAMILLDETQ
>NZ_CP053987.1|WP_062684361.1|5525980_5527756_-|lipid-A-export-permease/ATP-binding-protein-MsbA
MNSAARHAPAGSHPVKAELWKRIYSRVGSYWKGLLLAILLMAGAAATQPVLAVIMKPLLDGGFSGAKPYYVWALPLAVVGLILLRGICNFFSDYLLAWVANNVLLGMRRDMFERLLGLPDADFKQGDTGRLLNRFTIDAGNVTGYATDVITVLVRETLVVIALICVLLYMSWVLTLIILIMLPVSVLISRFFIQRLRRINRETVNMNAELTRVVGEGIDGQRVIKLFDGYEVERGRFDFVSRRLRRFAMRTATADAALTPLTQVCISISVGAVIAVALSQANSGALTVGSFASFMAALAQIFDPIKRLTNVAARMQKMLVSAESVFTLIDQVPECDTGTRELPEPVRGKVEFRNVSHRFPDADRDTVNDVSFVVEPGQTVALVGRSGSGKTTLVNMLPRFVLADSGQILVDDVPIGDLTLRSLRSHLSLVSQDVVLFDDTIAANVGYGALGKSSEQKVRDALAAANLLEFVDGLPQGMNTPVGENAARLSGGQRQRLAIARALIKNAPILILDEATSALDNESERQVQASLERLMKGRTTLVIAHRLSTVQNADRIIVLDAGKIVEHGGHAELLAAGGLYASLYKMQFRED
>NZ_CP053987.1|WP_062684360.1|5524014_5525820_-|cation:proton-antiporter
MSLPSDGNQLVNVVVLLGAAVVAVPLFKRLGLGSVLGYLAAGLAIGPFGMGLFSDPRSILHVAELGVVMFLFIIGLEMQPSRLWKLRGEIFGLGVAQVLACGALLTGVGLLAGLSGPAAFMAAMGFVLSSTAIVMQILAERGETASAQGQRIVSILLLEDLAIVPLLALASLLAPAGGAEHGDPWLQAAIAIGCILALLAAGRWLLNPLFRLLAAAHAREVMTAAALLVVLGAALLMELGGLSMAMGAFLAGVLLSESTFRHQLEAEVEPFRGILLGLFFLGVGMSLDLSAVVREWPLILAAVVVFMLVKSAGVYAVARILRATHAEATTRAALLAQGGEFAFVLYGAAAAAGIFDAHTAAVLTAVVIISMAFTPLCVLALRWLLPKPAPSMEGVDVAKDLDGCVLIVGFGRFGQIVTQAMLARDLKVSILDTDTDAIRAAAKWGVKVYYGDGTRVDMLRTAGAEHACIILICIDNPVSVNHMVKLVKAEFPLVRVAVRAYDRIHSLALAKEGVDYQVRETLESALAFGEGALRVIGVPADEAAEVVQDVRKRDTDRFELEVAGGLFAGRSLLYGNMSSPADGRNDKPDREAGEPAASPSA
>NZ_CP053987.1|WP_062684359.1|5523661_5523892_-|hypothetical-protein
MLQSDRISTTPQAVGVELARRQALALRCGFSAGSMRRLLSQTGGAGPAWSIGAHREADRARGARAFPFRIAAVAAS
>NZ_CP053987.1|WP_062684406.1|5522833_5523535_+|DUF3053-domain-containing-protein
MKSLFRPFLVLAAALPLLLAACGDKEPEQRAAFTQFLQTRIVDKPGVRVPKLTDEEKKSFGDYAAHYAVITDFNAGMDASVKPLSGIMQKGAVRSLNDIVTRRDDFKAVQASLNEMGTALQAQQAKADAAHAQLKQPEDLKAVYDKAYEKTVSLPADTFRDTLPQLNATFDASLKIADYVAAHASQIEMSGAIVKVKDPAVQAELNQLLQDLNTQAKNVQQAHTRMQAVMMGR
>NZ_CP053987.1|WP_062684405.1|5521163_5522627_+|ribonuclease-G
MSEDILINVTPFETRVALVEQGSVQELHVERSIQRGHVGNIYLGRVVRVLPGMQSAFIDIGLERAAFIHIADLRENRGERSQGLTPTPIEKLLFEGQTIMVQVVKDPLGTKGARLSTQISMAGRMLVYLPHDPHIGISQKIDTESERIQLRERLQALMPAEEKGGFIVRTQAEGANDEELTADLEYLRKLWTSVQAAARTQPAPALLHQDLTLAQRVLRDMVGPGTGAILVDSRTTSAAMLEWARIYTPSVVDRIQHYSGERPLFDTANVDEEISRALSRRVDLKSGGYLIIDQTEALTTVDVNTGGFVGGRNFDDTIFKTNLEAAQAIARQLRLRNLGGIVILDFIDMEDQEHRETVLAELKKALSRDRTRMTVNGFTQLGLVEMTRKRTRDSLAHQLCEPCPMCEARGNVRTPRTVCYEILREILREARQFNPKEFRILASQEVVDLFLEEESQHLAMLGDFVGKRVSLEVEGRYSQEQYDIILV
>NZ_CP053987.1|WP_062682049.1|5513236_5514592_+|sigma-54-dependent-Fis-family-transcriptional-regulator
MRQPLPPHAVFIDDDDELRRANAQTLKLHGISVDAHASARAALPALTRAFDGVVVSDIRMPDIDGLQLFRRVREIDPDIPVILITGHGDIATAVQCMHDGAYDFLAKPYAADRLITAITHAAEKRRLVLENRRLREAAFAVEADEVPFIGTTPAMQRIKQTLRHIADADVDVLVEGETGTGKEVVATALHRLSRRRDRPLVAINCGALPESVIESELFGHEAGAFTGAQKKRIGRIEHASGGTLFLDEIESMPLAVQVKLLRVLESRQITPLGSNDVRNLDLRVVAATKEDLGSPAIRATFREDLFYRLNVVTIRIPPLRERREDIPLLFAHYLGHASRRFQRDIPEMPAAIKQHVMTHDWPGNVRELAHFAERVVLGVLNTPVPDAAAATAAALSLPERMERFEAQLIRETLEAHRGDLKATLESLGIPRKTFYDKLQRHGIDRQQYLPQ
>NZ_CP053987.1|WP_082775767.1|5511227_5513186_+|sensor-histidine-kinase
MSRPDFSPPHASQAGEPPSLSVPRRRKHAWPWRVAAILLGVGVVFGVLHAATLWARDGALKNAATQARGTAQVNAALLRNNLDKFRALPFVLTRDVDVRAALQNPAPGQIESLDEKLDTLSRGVGASAIYVLDKKGWAIAASNWREPATFVGVDYQFRPYFQGAVTHGSAEHFALGTISHEAGLYLSRRVDDVGGAMLGVVVLKVDFRELEADWRQSNAPIFVTDEHGVVLLGSIADWRFDVLAPLPPGLAQTLRTSLQFGDARFQPLPVQPPLQAVSTGQLVRADTALPQIPAAAPLLHTTLPIVESPGWTLHLLSPVQAAINQATANAQLGALLAQSALAALIGIVLLRRHRQRERAHQQAAIHEQLTSLVDERTSQLLRVNEQLVDEMDERQRTAARLHTMQEELVQASKLALLGQVAAGVAHEINQPVAAIRAYADNAAEFLRRHDDGSARENLGTIAALTDRIGHITGELRAFSRKAGASVGPTSLKDCLEGALLLVGPRARRQGVALQRPPEMQNDLVQANRIRLEQVLVNLLQNALEALEGRTDGRIVITQQDLGATIRIQVADNGPGLSAQARARLFTPFHTTKPEGLGLGLVICRDIVAEFGGELNVAPPASASSDSQAPDGGALFVLTLRKAPGQDTASSPS
>NZ_CP053987.1|WP_062684364.1|5530348_5530939_+|ATP-phosphoribosyltransferase-regulatory-subunit
MKTDSGAIFIDAGAEEAIVPALWSQDTFVQKTGGSEIIDQMWAFPDKKGRPCCLIPEATALFQERCKDLLGRRQERLLFYVARCYRYERPQAGRYREFSQLGFEYLGPNPRSAAERSQEIAVGFLDSLGLRYELDDAAKRGLSYYLGGQGFEIRCAELGAQQQVLGGGAYREGAGFAIGAERLLLAMEAQALIGRA
>NZ_CP053987.1|WP_062684365.1|5530935_5532096_-|glycosyltransferase-family-4-protein
MKTPAGAVERRLRIALLVDRFGNRFGGAEAYGVELMRVLGQRHDVSVVARDFDSDLPFPFLPVRFPAWLPSWMRVLYFAWRADRLTRGRYDIVHSHMNGWAGEIQVMHVTPVRYNRLTRVKPLQRLTAWLSPRLATYLLLEKLRVRAVPARRVVAVSGLIMDQLHRSYGPQLPVDIIAPGVKLPTAAQREGREETRARLGWDAETIGCLLVARNPLRKGLPALLDALGQLPPQYRLLVVGADEPTRERVWAAGAIASRVTLIDPTPDVARYFSAADIYAHPTLNDSYGMAPLEAMSHGLPVVVSSPAYCGFAQYLSAGKDALILQDPRNGAQLAQALERLGSEPDLRAALAERGLAIAREQSWEAVASRYEDLYAQVLRERGQAGA
>NZ_CP053987.1|WP_087881394.1|5532070_5532796_-|polysaccharide-deacetylase-family-protein
MSIPILMYHQIGEPNPKGTPYRGLTVHPASFARQMRWMRRLGYRGLSMRDIMPYVRGERQGKVFGITFDDGYRNVHHNAMPVLSELGFTATNYFVAHQFDGGNVWDLQKGIPFSALMTVNEMREWAQAGNEVGSHTLDHVHLPKIAPEEARRQIVESKDELEQALGGPVTAFCYPYGDHGPEHRVMVREAGYDNATLTQRGLAAVSDDPYGLPRVTVARSTNIIRFLQKCLTRYEDSRRRR
>NZ_CP053987.1|WP_062684367.1|5533026_5534136_-|glycosyltransferase
MKILYTNFHAGNGGGHVTYIINLAKALAREHQITVAAPSTSRLYRYAQAIPGVTVEPMQYTTRPSSWFKDRAQLRRLIKAGRYDIIHANGSADHKQVMLATLGMSRRPRIVFTKHNDHPLTSFGHKLRVALATDHSIAVSDYIHGLMANSPYGKRPITTIRHGIDTDFFAPPPPESLDKLRALIFGPDWQGKLLLGSAGGTDYDKGWLDLVAAAAALPPADKARVLLMVAGDAPSEAKLARVRELGMIDQVRFPGLLDDVRASLAACHAGFVLSYREALSFACREIMGLGLPALVSDAGGLPENVTDGVDGWIVPVRDVPAITAKLRFMLDHPDAVRTMGAQARETAVRDFNLQRFAAATLDVYRRTLA
>NZ_CP053987.1|WP_062684368.1|5534132_5534885_-|glycosyltransferase-family-2-protein
MKLSVIIITKNEAANIAACLKSVAFADEFIVVDSGSTDGTVELAQALGARVEVTSDWPGFGPQKNRALDLATGDWVLSIDADERVTPELAQEIQEALSAPRADAYEIARLSNFCGRDIRHSGWWPDYVLRLFKRGTARFTDAAVHERVVPANGQPLKMRGYFHHYPYDNLDALITKVNRYSSDAAAMMYAKGKRTSIFGALGHGFWTFVRIYLIRRGFLDGKHGLVLAVTAAAGSFFRYSKLMFLADKQK
>NZ_CP053987.1|WP_062684369.1|5534881_5535730_-|polysaccharide-deacetylase-family-protein
MNAPNVPVLMYHHVTPAGGMIAATPDVFEAQISRLARAGYHSLSAAQFAAYLAGGEAPERSVLITFDDGYLNNWVHAHPVLARHGMRAVLFTITGWIGDGPLRPHAGQGGPLPATPDHDACKQLVASGRADDAMLRWSEIEAMQAAGTFEFHSHTHTHTRWDKVCGADTDAKRARIAQELRDSRETLVRRLGQASDHLCWPQGYFDADYVAAAREAGFRHLYTTDPFGQNSPGADPEHIYRFAVRNQAGSWLNRRIWLSRDPFWGPRFHAWKAWKKRLRNRG
>NZ_CP053987.1|WP_062684370.1|5535726_5536827_-|glycosyltransferase-family-4-protein
MRSLRIVHSEAATSFGGQEGRIFKEMTAMRARGHHMEAICQPQALLAERLSDAGFTVHTLEMDGVANYLKGVATIRGILREGRFDVLNTHSRRDTVIAAAAGRLAGTPLIVRTRHLSNKVGSLWSYTRLPHRVTTVSDHVRQHLIDRGVPADRVATVYSPIVLPPPVERSTLREELGLADDDIVVGCVAVMRATKGHKDLIDAIAPLMASRPRLHLVFVGGGSPVFEQTQAYVVELGLQDRIHLMGMRRDVPNLLAGFDLFALATQQEASGTVYVEAQASGLPVIGTDVGGVSEMFRDGETGILVPPKDARALTEALQRLIDDADLRRRMGEAGRKMVWDEGVFSPARLAETTEAVYARWLGERAK
>NZ_CP053987.1|WP_062684371.1|5536826_5540318_-|DNA-polymerase-III-subunit-alpha
MSEAVTNPSPFVHLRVHSEFSVVDGIVRIPDLIKRVAKLGQPAVALTDLSNLFGLIKFYKGARGAGVKPIAGCDVWLSNDDDPAKPFRLLLLVRNHQGYLNLCELLTKAFLTNQGKGRAEIRREWLQGQDGLIVLSGGRGGDVGQALDAGNAVSALALARQWAHLFPGSFYIELQRAGMDGDEAYTQAAMRLAAEAGLPVVATHPVQFLDEFEFQAHEARVCIAEGEILANPRRVRRFSKEQYLLSSEEMARRFADVPSALANTVEIAKRCNLSLVLGKPRLPNFPTPEGVTLDDYLVQLSEEGLEKRMRFLFPDDAERESKREQYYERLRWECKTIIQMGFPGYFLIVQDFINWGKNNGVPVGPGRGSGAGSLVAYALGITDLDPIRYDLLFERFLNPERVSMPDFDIDFCQDNRERVIDYVKEKYGRAAVSQIATFGTLGAKAVVRDAGRVLDMPYMFCDGLSKLIPFNPMDPWTLERTLKDEPAFKDRYEQEEEVRALVDLAKPLEGLTRNIGMHAGGVLIAPGKLTDFCPLYCQPGQENSAVSQFDKDDVEAAGLVKFDFLGLRNLTILDWAVRYVRQFNEDKRDFDVMALALDDPAAYKILCDANTTAVFQLESRGMKELLKKLRPNTFEDIIAMLALYRPGPLESGMVDDFVNRKHGRAAVDYFHSDLESTLKSTYGVIVYQEQVMLISQIIGGYSLGGADLLRRAMGKKKPEEMAKHRELFEQGAKEKGHDPDLAVKLFDLMEKFAGYGFNKSHSAAYALISYQTAWLKAYHPTEFLAATMSSDMDDTDKVQIFCRDAQDNGVEVLPPDVNFSGYRFEPVADKHTKNGKPPRTMRYGLGAVKGTGQGAVEDILRARKEGGPFLNLFDFCRRVSKHAVNRRTIEALIKAGAFDTIEPNRAAMLASVPTAMEAAEQAARSANQASLFGDDSSDVVAGELAKVAPWDLHKKLTEEKTALGYYYSGHLFDAWRDEVRRIVPMQLARVEPQRDLQWMCGVLASVRVMMTRRGKMVFAVLDDGTAQVEISVFNELYEKHRNRLREDQLVIVQGKVSNDDYSGGMRIVAEQLYDLQLAREARAKSLRVKLNGSADAARLRQMLNPFRAEPENGIPGVPVDIVYSKNNFLCTVRLGEEWRVRMADTLLANLNEWTKPDGVEVTY
>NZ_CP053987.1|WP_062684372.1|5540433_5541333_+|lipid-A-hydroxylase-LpxO
MKWLIPGIWLAAILFAHFRGRVKLPLGRQMLDHSVLLAPINAFMVLASRVPPTPYLTTSEIAELKVLDDNWETIREEAVQMAELRRIKAADTHNDIGFNSFFKYGWKRFYLKWYDARHPSAEELCPKTVAILKTLPKVKAAMFAELPPGGQLNRHRDPFAGSLRYHLGLVTPNDDRCHIIVDGEPYSWRDGESVVFDETYVHEAYNRSEQNRIILFCDVERPLKWRWAEAFNRWFGRVVMSAASSPNDGGDQTGAINKLTHAHWVIDQKRKAFKAWNRKVYKATKFGLIALVIVGFLAL
>NZ_CP053987.1|WP_062684373.1|5541379_5542675_-|AAA-associated-domain-containing-protein
MNPNSLIELHDVGKSFRAADGTARHVLEHVDFTLKEGEIVALLGKSGSGKSTLLRIMAGLVNADHGTVTYRGQPVYGPASGIAMVFQSFALFPWLTAQQNVELGLEAQGVAPAERARRADAVLDLMGLGGFGGALPRELSGGMRQRVGIARALVMNPDVLLMDEAFSALDVLTGETLRDDMLELWDESRISTKGILIVSHNIEEAVMMADRIIVFSSDPGRVRSQILVGLPRPRDVDSAQVRALIDEVYALMTMRPAHDVPTPLQQGLGYRFPQTEVERMEGVLDVLAEAPFNGRADLPKLAEEAEISDDDLLPACEALGLFGLARIDRGDIFLTPLGQRYVLAEQAQKQVIFGRQLLAHVPLAAHIRHSLEQEPAGALPDKVFLGSLEEFLKPDEAERVLKIAVEWGRYGEIYGYDYHTGLLTLPVPDPA

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Crispr_ID: NZ_CP053987_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053987_3

6224691-6224808

Orphan

Consensus_repeat	Method
CAGCAAGCGAGCGTAGCGAGCGCGGCGTGGGGGCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP053987_3

>merge|NZ_CP053987|3|6224691-6224808|CRISPRCasFinder
CAGCAAGCGAGCGTAGCGAGCGCGGCGTGGGGGCCCCTTCCGCCGCCGGGCCGCCCCAAGGCGGAAGCGTCCCCTCGGGGGGCAGCAAGCGAGCGCAGCGAGCGCGGCGTGGGGGCCC

>NZ_CP053987|3|3|6224691-6224808|CRISPRCasFinder
CAGCAAGCGAGCGTAGCGAGCGCGGCGTGGGGGCCC	CTTCCGCCGCCGGGCCGCCCCAAGGCGGAAGCGTCCCCTCGGGGGG
CAGCAAGCGAGCGCAGCGAGCGCGGCGTGGGGGCCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053987.1\|WP_062679592.1\|6220150_6221482_+\|arylsulfatase	unknown	unknown	gnl\|CDD\|293761
NZ_CP053987.1\|WP_062679605.1\|6234474_6235701_+\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NZ_CP053987.1\|WP_062679589.1\|6217108_6217942_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
NZ_CP053987.1\|WP_062679602.1\|6231118_6231967_+\|phytanoyl-CoA-dioxygenase-family-protein	unknown	unknown	gnl\|CDD\|227609
NZ_CP053987.1\|WP_062679588.1\|6215254_6217105_-\|dipeptide-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|182342
NZ_CP053987.1\|WP_062679586.1\|6212073_6213618_-\|M81-family-metallopeptidase	unknown	unknown	gnl\|CDD\|377823
NZ_CP053987.1\|WP_062679604.1\|6233542_6234472_+\|phytanoyl-CoA-dioxygenase-family-protein	unknown	unknown	gnl\|CDD\|368580
NZ_CP053987.1\|WP_062679600.1\|6229597_6229888_+\|DUF4148-domain-containing-protein	unknown	unknown	gnl\|CDD\|379321
NZ_CP053987.1\|WP_062679593.1\|6221522_6222488_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270296
NZ_CP053987.1\|WP_062679601.1\|6229969_6230938_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|236612
NZ_CP053987.1\|WP_062679598.1\|6226927_6228055_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224753
NZ_CP053987.1\|WP_062679596.1\|6224833_6225529_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP053987.1\|WP_062679591.1\|6219143_6220049_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176126
NZ_CP053987.1\|WP_062679590.1\|6217941_6218883_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
NZ_CP053987.1\|WP_062679597.1\|6225531_6226935_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|182388
NZ_CP053987.1\|WP_062679599.1\|6228290_6229376_+\|LuxR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197715
NZ_CP053987.1\|WP_062679603.1\|6231975_6233520_+\|AMP-binding-protein	unknown	unknown	gnl\|CDD\|341259
NZ_CP053987.1\|WP_062679587.1\|6213632_6215225_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173867
NZ_CP053987.1\|WP_062679595.1\|6223245_6224586_-\|CitMHS-family-transporter	unknown	unknown	gnl\|CDD\|225407
NZ_CP053987.1\|WP_062679594.1\|6222495_6223236_-\|acetoacetyl-CoA-reductase	unknown	unknown	gnl\|CDD\|171822

Protein	Function_ID	Function_description	E-value
NZ_CP053987.1\|WP_062679592.1\|6220150_6221482_+\|arylsulfatase	gnl\|CDD\|293761	cd16142, ARS_like, uncharacterized arylsulfatase subfamily. Sulfatases catalyze the hydrolysis of sulfate esters from wide range of substrates, including steroids, carbohydrates and proteins. Sulfate esters may be formed from various alcohols and amines. The biological roles of sulfatase includes the cycling of sulfur in the environment, in the degradation of sulfated glycosaminoglycans and glycolipids in the lysosome, and in remodeling sulfated glycosaminoglycans in the extracellular space. The sulfatases are essential for human metabolism. At least eight human monogenic diseases are caused by the deficiency of individual sulfatases.	0
NZ_CP053987.1\|WP_062679605.1\|6234474_6235701_+\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	2.39301e-58
NZ_CP053987.1\|WP_062679589.1\|6217108_6217942_-\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	6.64869e-89
NZ_CP053987.1\|WP_062679602.1\|6231118_6231967_+\|phytanoyl-CoA-dioxygenase-family-protein	gnl\|CDD\|227609	COG5285, COG5285, Protein involved in biosynthesis of mitomycin antibiotics/polyketide fumonisin [Secondary metabolites biosynthesis, transport, and catabolism].	7.91527e-31
NZ_CP053987.1\|WP_062679588.1\|6215254_6217105_-\|dipeptide-ABC-transporter-ATP-binding-protein	gnl\|CDD\|182342	PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional.	0
NZ_CP053987.1\|WP_062679586.1\|6212073_6213618_-\|M81-family-metallopeptidase	gnl\|CDD\|377823	pfam07364, DUF1485, Metallopeptidase family M81. This is a family of proteobacterial metallo-peptidases.	2.65496e-85
NZ_CP053987.1\|WP_062679604.1\|6233542_6234472_+\|phytanoyl-CoA-dioxygenase-family-protein	gnl\|CDD\|368580	pfam05721, PhyH, Phytanoyl-CoA dioxygenase (PhyH). This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins, ectoine hydroxylases and a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalyzing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterized by the accumulation of phytanic acid in plasma and tissues.	1.45429e-19
NZ_CP053987.1\|WP_062679600.1\|6229597_6229888_+\|DUF4148-domain-containing-protein	gnl\|CDD\|379321	pfam13663, DUF4148, Domain of unknown function (DUF4148).	9.74819e-05
NZ_CP053987.1\|WP_062679593.1\|6221522_6222488_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	1.67386e-97
NZ_CP053987.1\|WP_062679601.1\|6229969_6230938_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|236612	PRK09685, PRK09685, DNA-binding transcriptional activator FeaR; Provisional.	4.18473e-22
NZ_CP053987.1\|WP_062679598.1\|6226927_6228055_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|224753	COG1840, AfuA, ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism].	1.55846e-27
NZ_CP053987.1\|WP_062679596.1\|6224833_6225529_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	7.89075e-73
NZ_CP053987.1\|WP_062679591.1\|6219143_6220049_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176126	cd08435, PBP2_GbpR, The C-terminal substrate binding domain of galactose-binding protein regulator contains the type 2 periplasmic binding fold. Galactose-binding protein regulator (GbpR), a member of the LysR family of bacterial transcriptional regulators, regulates the expression of chromosomal virulence gene chvE. The chvE gene is involved in the uptake of specific sugars, in chemotaxis to these sugars, and in the VirA-VirG two-component signal transduction system. In the presence of an inducing sugar such as L-arabinose, D-fucose, or D-galactose, GbpR activates chvE expression, while in the absence of an inducing sugar, GbpR represses expression. The topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.00387e-45
NZ_CP053987.1\|WP_062679590.1\|6217941_6218883_-\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	9.57224e-123
NZ_CP053987.1\|WP_062679597.1\|6225531_6226935_+\|sensor-histidine-kinase	gnl\|CDD\|182388	PRK10337, PRK10337, sensor protein QseC; Provisional.	9.33588e-48
NZ_CP053987.1\|WP_062679599.1\|6228290_6229376_+\|LuxR-family-transcriptional-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	7.57754e-06
NZ_CP053987.1\|WP_062679603.1\|6231975_6233520_+\|AMP-binding-protein	gnl\|CDD\|341259	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD. This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions.	4.55215e-165
NZ_CP053987.1\|WP_062679587.1\|6213632_6215225_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173867	cd08502, PBP2_NikA_DppA_OppA_like_16, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NZ_CP053987.1\|WP_062679595.1\|6223245_6224586_-\|CitMHS-family-transporter	gnl\|CDD\|225407	COG2851, CitM, H+/citrate symporter [Energy production and conversion].	0
NZ_CP053987.1\|WP_062679594.1\|6222495_6223236_-\|acetoacetyl-CoA-reductase	gnl\|CDD\|171822	PRK12938, PRK12938, 3-ketoacyl-ACP reductase.	2.39353e-117

>NZ_CP053987.1|WP_062679595.1|6223245_6224586_-|CitMHS-family-transporter
MLLTLLGFGMVITFMTLIMTKRLSPLVALILVPIIFALLGGFGAGIDKMMLDGIRKIAPTGVMLMFAILYFGVMIDAGLFDPIVGRILRAVKGDPLKIVVGTTVLALVISLDGDGSTTYMIVVASMLPLYRRLKMNALSMTCLAMLASGVMNLTPWGGPTARAASALHVDAGDIFVPLVPVMGVAIVAILVLAFFLGLRERRRLGVLSLPGGASLHAGYDEDGPKTLPEIEVDHDLRRPKLLWVNAGLTLALMVSLVLGVLPLPVLFMIAFAIALVINYPDLAEQRRRVAQHAGNVLSVVSLIFAAGIFTGILSGTGMVEAMSRSLLAVIPDAMGPYLAGITALVSLPFTFFMSNDAFYFGVLPILSEAAQGYGISAVEMARASLVGQPVHLLSPLVPSTYLLVGLAGVDFGDHQRYSLKWATMVCLVMLAAALAFGLFPLVGQSS
>NZ_CP053987.1|WP_062679594.1|6222495_6223236_-|acetoacetyl-CoA-reductase
MALRIAYVTSGMGHTGTAICQALHRAGHRVVAGCGPRSSRKRHWLEEQKSLGYDFIASEGDATDWASTEAAFDKVRREVGEIDVLVNNAGSMLDMRFRQMTHADWSAVLRSNLDTLFNSTKQVVDSMADRGWGRIVNIGSVAAEKGQIGQINYATAKGAVIGFTRSLAQEVAARGVTVNLVSPGFIADDTVKAFPPALLDRIVESVPVGRLGTAQDLAGLCAWLASDEAAFVTGANYAINGGVYMS
>NZ_CP053987.1|WP_062679593.1|6221522_6222488_+|tripartite-tricarboxylate-transporter-substrate-binding-protein
MKFAIHCGALLLGAAVSSAAVAADVKLDWPGKQITWVVGFVPGGTADVLTRIAAQELARQSGLNVVVENRPGAAGAIALQLVARSKAADGYLLTVPGPLIYPTPQPQIGRELSPVILMAQGPMVIVGPAKDARASLQDVLEDARRRPEAWSYGSSGNGTSQNLAGELLNQYAGTRIVHVPYKGGGQAVADVAGGQIPLAILGSAPVMPQIKAGTLKAYAVTTPYRLDSLPGVPTVEESGFKGYAATQWFSVAAGKAIPEAQLEQVNAALQAAIRAPEFKAAVDNAGMIAGGGSRADLQAFIQADDAKWKKLLDSGAVKLEN
>NZ_CP053987.1|WP_062679592.1|6220150_6221482_+|arylsulfatase
MEKKPNIVLIVADNLGWGELGCYGGGALRGAPTPHIDRLATEGLLLQNFNVESDCVPTRSALMSGRHPIRTGCLQSVPPGLPQGLARDEITLAQQLSAQGYATAHYGKWHLGDIPGRYPSDRGFDEWYGIPRTTDESQFTSSIGFDPAVADLPHIMQGQAGEPSENVKVYDLDSRRGIDAELVDRSVGFMRKHAEAGRPFFLYLPLVHLHFPTLPHPDFAGRTGAGDFADSMVEMDHRVGQVASAVDELGLREDTVFIFCSDNGPEFRKPYRGTAGPWTGTYHTAMEGSLRVPFIIRWPGKVKPGQVSNEIVHVTDLYTTLSRIGGAPIPQDRPIDGVDQTDFFTGASAASPREGFLFYIKNDLRAVKWRDWKLHFYWEPEVNEGKGKLESPYLFNLKQDPKEESDILIFNTWVLGPILKMVQAFNQSCIAHPNTPPGKLDPS
>NZ_CP053987.1|WP_062679591.1|6219143_6220049_-|LysR-family-transcriptional-regulator
MNLSLRDIEYFLAVVEHGNLDRAASACGVSQPAVSKSLQRLEADTGLALLDRGGRGLRLTSAGLAFREHAQRLWAEYRDAVRNAMELRVGEAGLLRIGATGATVDSVVMPALRLLLPRRPALRVQLTQGQSDDLNEQVAGGKLDLAVTPIYADVPGTLHHEPIREDGLCVAASRKHPLASRRKLALRDLDGQRWILPMPGSVARQAMEAGYAEAGLAMPPAALEVQHFSGGALALLAASDLLALMPQSALNGDIAELPVSLGRPLRRCMALVTRHGATWSPLMQEFRAAVLDRARQGAESS
>NZ_CP053987.1|WP_062679590.1|6217941_6218883_-|ABC-transporter-permease
MLSYTLRRLLMTLPVMLFVALFVFGLLDLAPGDPAALLAGEDATPQDIARIRATLGLDQPFLHRFGEWGWSVLHGDLGTSLFTGLPVSHMIGQRLVPTFSLMVMTLIVSVVVAIPIGALAAWKHNRLQDRGIMVLAVFSFSVPSFAVGYLLAWIFGLQLRWFPVQGYAPLSAGFWASVHTLVLPALALGSVYVALITRITRATLLETLSQDYVRTARAKGVGNRGLLFRHALKNAAVPIITVIGSGVALLISGTVVTETVFSIPGLGRLVVDAILRRDYPVIQGVILLFSFMYVLVNLLVDLLYRAFDPRIKY
>NZ_CP053987.1|WP_062679589.1|6217108_6217942_-|ABC-transporter-permease
MNTYTGFLKRHPTTAVGGALLLLLFLVALCAPWLGTVDPTALSPIHRTRSPNAQFWFGTDLLGRDVYSRVIYGARVSLIVGFTVAALSTVIGVLIGLAAGFVRWVDAVVMRIMDGFMSIPTILLAIALIALTRASLQNVIIAITIAEVPRVVRLVRGLVLSLREQPYVEAAVAAGASRVRIVLRHIFPNTLAALMVQATYICGVAILAEASLSFIGAGVPPSVPSWGNIMAEGRALWQIKPHLIAFPAVFLSITILAINMLGDGLRDAVDPRMAKRI
>NZ_CP053987.1|WP_062679588.1|6215254_6217105_-|dipeptide-ABC-transporter-ATP-binding-protein
MDTTMKQNRRVLEVEDLSISFGRGDNAFRAVKSLSLHVDRGETLAIVGESGSGKSVTSLAVMRLVEFGGGRIESGRMTFHRGPGEAVDLVAASEDSMRAMRGNDLGMIFQEPMTSLNPVFTVGSQIVEAIRLHQPGDAKSAQAAARRILDQVRIPDAAAIMGRYPHELSGGMRQRVMIAMALSCKPALLIADEPTTALDVTIQAQILQLIRELQHEMDMGVIFITHDMGVVAEVADRVMVMRKGDVVENNDVQGLFQAPQHPYTQALMAAVPRLGAMRGTALPARFPLLSGGGAERPPKPPAVAAKDEVVLSVRGLVTRFDVRGGVFARVKKRVHAVEQVSFDLHAGETLSLVGESGCGKTSTGRSLLRLAKTTRGTIAFQGKPVSQDDPASLLALRRNMQFVFQDPFASLNPRMRVGDCVKEPMLIHRLHSGEQADRRAAELFERVGLDPSMMRRWPHEFSGGQRQRICIARALSVDPKVLIADESVSALDVSIQAQIVNLLIDLQRDLGVSYLFISHDMAVVERISHRVAVMYLGQIVEIGPRQAIFENPQHAYTKKLMQAVPIADPAARRRGPLELSELPSPARAVGDEPVVQPLVQVGEGHFVARHRIGGAY
>NZ_CP053987.1|WP_062679587.1|6213632_6215225_-|ABC-transporter-substrate-binding-protein
MDRRNFLLASSASAAAWALPGLSWAAPAKTSFRWVPQADLTLLDPMFTTVAMTQVHAQLVFDTLYGLDEQYQPSPQMAAGHVSENDGLLWKITLRDGLAFHDGAPVRAQDAVASIQRWAKKDLMGRSLMQATESLTATDDKTIQFQLKKPFPLILHALGRQSGNMACIMPERLAKLPETEAVKEMVGSGPFTFASGKWVSGSRVVYEKFAGYVPRKDEKKPVFTAGPKLAHVDEVHWHIIPDRATAIAALQANEVDGVEMVDSDFLPILSQDPNIRLVKRSLPTIGVMRFNHLHAPFNNPAIRRAVLSAVNQTEYMTAMNGADFPEYWSDRCGVFVPGSPMDSDAGMETLTGKRDIDAARAAIKAAGYNGETVVLLDPVDFPTWHAAALVTADLFKRLGFKVDVQTMDWGTAVQRRNNQEAPTAGGWSVAFTGNTGPNNLDPAGHLALRGNGKQAWFGWPTSERLEQLRLDWFNAADLDAQKKICREIQLQVFEDVPYIPLGASYPVSALRSNWKDFQPQMSLFYTLHKA
>NZ_CP053987.1|WP_062679586.1|6212073_6213618_-|M81-family-metallopeptidase
MSSKAPKVAILGFHLESNAFCPPSVEADFLAQCWEEGDAISELVRGPSRLPSEVAGFYDRMNQLGDWTPAPLIVIGAPPGGPAGASVWATFLAEVERRLRAALPVDAVYVANHGASSAVGENDTEGVLMRLLREIVGPDVPVVATHDLHCNVSAETVAALDGLIAYRTNPHVDQRERAAEAADMIHEILGGTRMVTAYVRLPLTPPSVTLSTASGPYADLVALGASLTQKPEEGPIANVAVCAGFVFSDLPKCGVTITVTARGDLQAARSKALQVARAGWADRGRYVANTVEVARAVELARDASRPLLFADVADNPGGGGRGNTTWLLKAFDEARIPGVVLGVFVDPQLVEQATALGAGAEFEAVFNRVETEYSRRYAARARVLKLTDGEGMGRRGILKGRKFSMGDTCLLELVDSGMKIVVGSLRRQLAEPAMLEMHGIDIARAGHVIVKSRGHYRAGFDEFFPNECIHDVDSPGLTTPNLKQISFKGLPRPVWPLDDAAAWREPDWAAELRE
>NZ_CP053987.1|WP_062679596.1|6224833_6225529_+|response-regulator-transcription-factor
MRILVIEDDEDLADAIVRRLRRLGHAVDRQGDGMSADGVLQYESFDLVILDIGLPRMSGFEILHRLRDRGSKTPVLALTARIDIEDRVHALDTGADDYLAKPFDFRELEARCRALLRRPIAQAAGVLRFGDLVIDSAARQVTLAGQRIELPKREYSLLEILLAGMNRAVSKTEIANKLFAFDDDAAPNAIEVYIARLRRKLEGSPLRIETQRGTGYLLTAAEDAADGSESP
>NZ_CP053987.1|WP_062679597.1|6225531_6226935_+|sensor-histidine-kinase
MQHGRISVRRRLLATLLALFAAALAALYLLVRGYAHQTADTTYDQLLRASVLSIADSLQLVQGEWRMDMPYASLALLEQAPRDRVFYRVVATGGELVSGYADLPSPPARGDAGPADTPRLYDARYQDEPVRVAWMERKIAGPRDAETAVIQVAQTREARNALAAGILWQGTLALIGFAAAALALAYWGLQRSLSPIQRIERELAARNASDLHPIAAPVPEELDTLVHALDGFMARLSENLDTLRLFIAEAAHQLRTPLAALHAQMEVALDEEDPAEQRRSLLAVLRNAEKLSRLVNQLLSDASVIHRSNVRQFQPVDLAELLSQALYDTVPQADPQPDVRLSLPAAANPPRIMGDSLMLREAFKNLIDNALRHGATEDGHIDVRLEADGADWRVIVSDQGPGIAPALANTAFERFARGPNPRSPGAGLGLSIIKRVVDIHQGRLVLSNRVGGGLEAAITLPGMPQDA
>NZ_CP053987.1|WP_062679598.1|6226927_6228055_+|ABC-transporter-substrate-binding-protein
MRKTLAALRRLAAAAALLLPIALQAAETSGGGLTLGPADGNNVLVVHASNSVQVFRGVLEDFSRLNPAIRLEYTELSTQDLYAQTVARAWQSPAARIGPDIVISSAMDLQTKLVNDGYAQAHVSPETRALPGWANWRDEVFSIGTDPIVMVYNTDRLDAARAPRTRRELLSLLQAPDQPLAGGISTYDVEGSGIGYLAATQDTRLDSMAGALLAALGRNGVTVHESTEHALDRLERGEITLAYNLLESYTRHRIDRGAPLAIVYPQDYTLMLSRSAIIPKQAPRADLGRLFLDYLLSPRGQEMVAQQSGMRPVSASVIAAAGVRPMGLGVGLLVYLDPLKKKHFLDLWKAAIQPAAAGPGAPPAAGGPGPGGPID
>NZ_CP053987.1|WP_062679599.1|6228290_6229376_+|LuxR-family-transcriptional-regulator
MAEHPIAVRRAVEAVSHLVDPAPPWLDILRTARDMVGADSGTLIVFDARHNLLNLASIGFSEACAADYQNHYYRCDILERDSRLSPSGTWLDTARMYPRGQLQRSEFYTDFMVKHRMAQILSLVVESNAVVHAAIGFQRSTEDGGASDRLQTGAFGQYFRTLRSQLAQREKALAIGWRSIESAFTDVGEAVLLISKDAMVDKMSTLAMRYLDDGHGWHVRAGRLRHANGKIQALFDTHCQAVARDGKARSLAAASGWGELFWIDISAAPEALNLIGGAMLLVRMRRKSAFAPPDIDRLESVFAITHAEAAVLAGLATGHSVEEVATLRNASVLTVRKQVASLLNKMECSRQSELVRLASLL
>NZ_CP053987.1|WP_062679600.1|6229597_6229888_+|DUF4148-domain-containing-protein
MKTALFLRAAVPVALATAALLSGPAGAQTASTSSDTSATVTREDVMRDLAAWKQAGLENNWNSENTPDINSPEYVASYKKYVDTVKPASAPPVRTQ
>NZ_CP053987.1|WP_062679601.1|6229969_6230938_-|helix-turn-helix-domain-containing-protein
MSAQAYRHTTDVIAPQDQFAYWRDAICDAYVPLEPERSAAPSFRGQIDGLLLPDLHGSTITAQSHVVRLSPTGLAARAHSPFFANLLCAGEAVVSQGGSTQRARAGDVYVVDCASPWEVDFRTDFRMFCIEIPEGLLRPQLGRSGRLALPVVDGSSGAGRVLASYMRLVSELPANELQQVQALMIKHCGELLSRTQLEDAGAQIAERVRYEVLERILALVQRRLADRALTPASASEELGISRSYLFKVMAEHGLSFSAHVRQCRLEQCRLAIETQSGRSIADIAASWGFEEVSTFNRAYRAQYGRSPGSERAGTSSRDGRRI
>NZ_CP053987.1|WP_062679602.1|6231118_6231967_+|phytanoyl-CoA-dioxygenase-family-protein
MSTPEPLDERIAAFQRDGFVVLDGIIPPAQVSQLQEALIRVEAEHDLGFAKTSFEGRRTVRINNLLVYDPRFWDVPLQPDVLSLAERLLDRELLLSSLCSLTLAPGQGAQPLHEDTQQLALPRPRPPLAVNAIWALSDFTPENGATHLVPGSHRYDSAPPYGAQDVETVQATMKAGSVMLFDSALWHKGGANESNARRYALSCYYCAGWMRQQENLQLGIPADVARRFPRRLQELCGYSIYKGQYGHIDNADPITLLGGEGRPTVWQATDAKAARNAGGGQA
>NZ_CP053987.1|WP_062679603.1|6231975_6233520_+|AMP-binding-protein
MPAPALPVVADSVVHLLRDAARETPALPALSFEGARLDYAQYAGLAGALAQRLGQRVGPGERIALLMQNSLDLAVATFAVHALRAQAVPLNPGYRERELAFMLEDAAPCMVLHDDSVKADLRALCPWLDADAIVRTGDGAGLLALLPQACALPDDLPRHEDLATLQYTGGTTGRPKGVNILHRQIAYNIAQREAWLPTRRGAEVVLCVMPLFHVSAVSMSLYLSLHARGELVILRRFDAARTLEAVAAHGATLLPGAPAIFHDLLRCPALGTERLGTLRACFSGAAPLPREVLARFEERTGCPIYEGYGMSEAGPCLAFNPMHRPRRPGSVGLPVPGGELQVVDLDNGGKGMPPGQPGEIRVRGPHVMAGYRRAAPDAGQALREGWFHTGDVAVMDADGYLHLQGRRHDCINVGGFKVYPLEVEQVLLSRPEVGEAAAFGVLDERLGQVVHAWVTPAPGQRLDLDALQAHCAAHLAGYKVPRRIGAAGALPRTSIGKLARNALEPVSAPDPISQ
>NZ_CP053987.1|WP_062679604.1|6233542_6234472_+|phytanoyl-CoA-dioxygenase-family-protein
MKTIDLQALQNQLTEEGYAVIENVLDAEALARARERVAGLMAAERADPFPLDDERHEDDDEILAYYKKHYTVSDQEARRMVARIHQYRRDNQGTRWPVPISKVSKNFLHLPTLFDDDKSQRIWNLLNKAPDMIPLIEHPQVLPMVRHVMGADCNLHDFQATSIGPGTGGGAWHVDAPLGQIAEPLPEFPLTLQNVWMLDDFTADNGATRVMPRSHKLRKSPPWGSGPLDGEVTLTAPAGSVAIWLSNTWHRSGPNHTGRERRAILCNYNVSWLRGFADFTSTLAPDVAAGLSNDARYLLGYGARAPLTR
>NZ_CP053987.1|WP_062679605.1|6234474_6235701_+|serine-hydrolase
MATATFPEAADAAEVAVHGYCAPGFDAVRAAFARNFLDADELGASVAIEVDGRLVVDLWAGWADAQRQRPWERDTVCIVFSNTKPATALCAHMLAEAGELDLDAPVSRYWPAFGSAGKDGITPRMLLNHTAGLPALRDPLPPGAAFDWEEMTGRLARAAPFWAPGSRVAYHGLTYGWLVGELVRRQGGCMPGEFFRRHVAQPLDLDFWIGLPESEEARVAPIVPPPAPQPPLSPFEQSLNEAHSPTALYAKNTGGWRPSGFNSRAGHAAGLCAAGGIGNARSLARLYGALALGGARDGVRLLREDTLASATALSAQSDDDACLRVPTRFASGFMRQMDNRGRGLDSACFGEEAFGHTGAGGSLAFAWPRRRLSFAYTMNRMGRTVLLDERAHRLVRAAHAAIGVPPPC

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Crispr_ID: NZ_CP053987_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053987_4

6413201-6413289

Orphan

Consensus_repeat	Method
CCCGCGCCGGTGTACGTGGCGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP053987_4

>merge|NZ_CP053987|4|6413201-6413289|CRISPRCasFinder
CCCGCGCCGGTGTACGTGGCGCCCCAACCCGTCTACGTGCCGCCGCCTCCGCCGGTTTATTACCGCCCCGCGCCGGTCTACGTGGCGCC

>NZ_CP053987|4|4|6413201-6413289|CRISPRCasFinder
CCCGCGCCGGTGTACGTGGCGCC	CCAACCCGTCTACGTGCCGCCGCCTCCGCCGGTTTATTACCGC
CCCGCGCCGGTCTACGTGGCGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053987.1\|WP_156494246.1\|6413531_6413690_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053987.1\|WP_062679761.1\|6408456_6409584_-\|mandelate-racemase/muconate-lactonizing-enzyme-family-protein	unknown	unknown	gnl\|CDD\|239432
NZ_CP053987.1\|WP_062679768.1\|6415544_6416885_-\|replication-associated-recombination-protein-A	unknown	unknown	gnl\|CDD\|237355
NZ_CP053987.1\|WP_082775659.1\|6411893_6412091_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053987.1\|WP_062679762.1\|6409745_6410624_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176118
NZ_CP053987.1\|WP_082775660.1\|6413676_6413925_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053987.1\|WP_062679771.1\|6419326_6420886_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173867
NZ_CP053987.1\|WP_062679756.1\|6402041_6403694_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340927
NZ_CP053987.1\|WP_062679759.1\|6406516_6407497_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270296
NZ_CP053987.1\|WP_062679769.1\|6416962_6417754_-\|deaminated-glutathione-amidase	unknown	unknown	gnl\|CDD\|143605
NZ_CP053987.1\|WP_062679760.1\|6407535_6408441_-\|dihydrodipicolinate-synthase-family-protein	unknown	unknown	gnl\|CDD\|188630
NZ_CP053987.1\|WP_062679774.1\|6423064_6424072_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223521
NZ_CP053987.1\|WP_062679773.1\|6422192_6423062_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
NZ_CP053987.1\|WP_062679772.1\|6421118_6422060_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223674
NZ_CP053987.1\|WP_062679758.1\|6404759_6406346_-\|EAL-domain-containing-protein	unknown	unknown	gnl\|CDD\|227279
NZ_CP053987.1\|WP_062679757.1\|6403866_6404715_+\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
NZ_CP053987.1\|WP_062679763.1\|6410636_6411830_-\|amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|180337
NZ_CP053987.1\|WP_062679767.1\|6414155_6415502_-\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
NZ_CP053987.1\|WP_062679770.1\|6417907_6419176_+\|amino-acid-deaminase	unknown	unknown	gnl\|CDD\|143492
NZ_CP053987.1\|WP_062679764.1\|6412282_6412786_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|119344

Protein	Function_ID	Function_description	E-value
NZ_CP053987.1\|WP_062679761.1\|6408456_6409584_-\|mandelate-racemase/muconate-lactonizing-enzyme-family-protein	gnl\|CDD\|239432	cd03316, MR_like, Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).	1.21718e-121
NZ_CP053987.1\|WP_062679768.1\|6415544_6416885_-\|replication-associated-recombination-protein-A	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
NZ_CP053987.1\|WP_062679762.1\|6409745_6410624_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176118	cd08427, PBP2_LTTR_like_2, The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold. LysR-transcriptional regulators comprise the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, nodule formation of nitrogen-fixing bacteria, and synthesis of virulence factors, to a name a few. This substrate-binding domain shows significant homology to the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.2339e-71
NZ_CP053987.1\|WP_062679771.1\|6419326_6420886_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173867	cd08502, PBP2_NikA_DppA_OppA_like_16, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	0
NZ_CP053987.1\|WP_062679756.1\|6402041_6403694_-\|MFS-transporter	gnl\|CDD\|340927	cd17369, MFS_ShiA_like, Shikimate transporter and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli shikimate transporter (ShiA), inner membrane metabolite transport protein YhjE, and other putative metabolite transporters. ShiA is involved in the uptake of shikimate, an aromatic compound involved in siderophore biosynthesis. It has been suggested that YhjE may mediate the uptake of osmoprotectants. The ShiA-like subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.29763e-117
NZ_CP053987.1\|WP_062679759.1\|6406516_6407497_-\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	1.24234e-126
NZ_CP053987.1\|WP_062679769.1\|6416962_6417754_-\|deaminated-glutathione-amidase	gnl\|CDD\|143605	cd07581, nitrilase_3, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.	6.06912e-128
NZ_CP053987.1\|WP_062679760.1\|6407535_6408441_-\|dihydrodipicolinate-synthase-family-protein	gnl\|CDD\|188630	cd00408, DHDPS-like, Dihydrodipicolinate synthase family. Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stabilizes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.	2.36985e-71
NZ_CP053987.1\|WP_062679774.1\|6423064_6424072_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.04788e-174
NZ_CP053987.1\|WP_062679773.1\|6422192_6423062_+\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	2.14158e-100
NZ_CP053987.1\|WP_062679772.1\|6421118_6422060_+\|ABC-transporter-permease	gnl\|CDD\|223674	COG0601, DppB, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	9.96174e-128
NZ_CP053987.1\|WP_062679758.1\|6404759_6406346_-\|EAL-domain-containing-protein	gnl\|CDD\|227279	COG4943, COG4943, Predicted signal transduction protein containing sensor and EAL domains [Signal transduction mechanisms].	3.73306e-163
NZ_CP053987.1\|WP_062679757.1\|6403866_6404715_+\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	5.29659e-49
NZ_CP053987.1\|WP_062679763.1\|6410636_6411830_-\|amidohydrolase-family-protein	gnl\|CDD\|180337	PRK05985, PRK05985, cytosine deaminase; Provisional.	0
NZ_CP053987.1\|WP_062679767.1\|6414155_6415502_-\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
NZ_CP053987.1\|WP_062679770.1\|6417907_6419176_+\|amino-acid-deaminase	gnl\|CDD\|143492	cd06818, PLPDE_III_cryptic_DSD, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Bacterial Cryptic D-Serine Dehydratase. This subfamily is composed of Burkholderia cepacia cryptic D-serine dehydratase (cryptic DSD), which is also called D-serine deaminase, and similar bacterial proteins. Members of this subfamily are fold type III PLP-dependent enzymes with similarity to bacterial alanine racemase (AR), which contains an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as dimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. Based on similarity, it is possible cryptic DSDs may also form dimers. Cryptic DSDs are distinct from the ubiquitous bacterial DSDs coded by the dsdA gene, mammalian L-serine dehydratases (LSD) and mammalian serine racemase (SerRac), which are fold type II PLP-dependent enzymes. At present, the enzymatic and biochemical properties of cryptic DSDs are still poorly understood. Typically, DSDs catalyze the dehydration of D-serine to aminoacrylate, which is rapidly hydrolyzed to pyruvate and ammonia.	0
NZ_CP053987.1\|WP_062679764.1\|6412282_6412786_+\|hypothetical-protein	gnl\|CDD\|119344	cd06552, ASCH_yqfb_like, ASC-1 homology domain, subfamily similar to Escherichia coli Yqfb. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.	1.28628e-05

>NZ_CP053987.1|WP_062679764.1|6412282_6412786_+|hypothetical-protein
MKRQSLQFSEPLKQAVLNGGKVQSRRILKPQPSKPTTVWYADASDSGRWVAMGPSLDNPSELRRTSSWVRCPYGKSGESIVLTDEAGNPFTTAVIVGVRIQRLQNLSEADARAEGIQALYQSSSLLPGVPLQTAFALTWCERYGSHAWAANPWVWVVEFRRQQDQEG
>NZ_CP053987.1|WP_082775659.1|6411893_6412091_-|hypothetical-protein
MTTDLHDLKPGYYWYTMANDPLAIIHIHEDGGATLMGTDYRIGAEGVADMVRQGERFFWIEPPQV
>NZ_CP053987.1|WP_062679763.1|6410636_6411830_-|amidohydrolase-family-protein
MTDLLLKNVRVQDAIADVQVRAGRIRQIGPALAAEPGMAVEDGAGALLLPGLVEGHAHLDKTTWGSPWYVNEVGSALTDRIHNERQWRASTGHDAASHARALALAFLREGTTRIRTHVDVDTDAGLRHLDGVHAVRQELAGRVEIQTVAFPQSGLLVRPGTAELLDQALAAGADALGGLDPSAIDRDPARSLDVLFGIADKHGKPLDIHLHEPGELGAFTLELILDRTQALGMYGKVVISHAFCLGGVDAKRLDGLLRRLAALDVALLTTAPPSRPVPPVRACREAGVTIFGGNDGIRDTWTPYGSPDMLARATLIGLRNDLRRDDEVEWAFDCVTAAAARACGFADYGLAPGARADLVLVDASCVAEAVVTRAPRRLVVSGGAIVARNGRDAVTPA
>NZ_CP053987.1|WP_062679762.1|6409745_6410624_+|LysR-family-transcriptional-regulator
MDSRFLQTYVHVVELGSIAQAARHQGLTPATVQQRLRALETDMGSALIARSGRTVKPTPAGTRILERARAILRDVRDLRSAASDTELPAGPLRLGATPTALTGIMPPVLRTWVARHPHIEIYIEPAPTTLLYSKVLSGELDGALLVHPLFAIPKTCAWRDLRQEPLVLATPADMEVRDPLAVLAREPYIRYDRSVVGGKMAEDYLRARNLRPHVRFELDGIESIARLVAEGLGVALLPDWATTGAPSSAVRRWPLPPPCPVRTVGAIWPRAGVRSALMQAFVELTETQLGLG
>NZ_CP053987.1|WP_062679761.1|6408456_6409584_-|mandelate-racemase/muconate-lactonizing-enzyme-family-protein
MPIIESIDVCAAAVPLDKVTSFSNRTVSTRHYGLVKIRSTDGVEGIGFCYVGSAGGAIFEAAVESLLAPVLLGKDSHAVEGLWQAMYQEALLQGRQGTVMRALSALDIALWDLNAKAAGLPLHRYLGAVELESVPAYASGGYYLDGKTPQHLGEEMASYVEKGFRAVKMKTGRLSPREEEARLKAAREAIGPDVELMMDCNNAWEDVTQAMQYIRRFEQYDPYFIEEPFGPDDIESHAKLARLTRLPIATAEIGYGRWYHKELLDKGAAGILQTDAAVCGGITEWKRIAATAASYGVMVCPHWFHDVHAPLVAATPNARYVEFFWDDQVLNFRKLVDRQLTHKQGRVILHQEPGLGFGFDERMVERFGKWTRVAR
>NZ_CP053987.1|WP_062679760.1|6407535_6408441_-|dihydrodipicolinate-synthase-family-protein
MSTAASDRPQGVYSPVLTPFNADRSPSAPRFVEHCRALLEQGAGLAIFGTNSEANSLTVAEKRALLDALLEAGLPAGRMMPGTGACALPDAVELTRHAVRAGCGGVLMLPPFYYKGVSDEGLFRAFAHVIEQVADERLRIYLYHIPPVSGVPVSLALIDRLLGEFPGIVAGVKDSSGDWANTEAMLRDFQPRGFDVFAGTETVLLETLRAGGAGCITATGNVNAGPIVELYRRWREDDAEDRQRALNETRAVFQSYPMIPAMKAAIAERRGDPAWATVRPPLVELDETQSRQLAQRLAALS
>NZ_CP053987.1|WP_062679759.1|6406516_6407497_-|tripartite-tricarboxylate-transporter-substrate-binding-protein
MQRRQFMTGAAALGAALVLPAAARAQDMPSGPVKIVVGFPAGGGTDVLARLLGQKLGVMWSIPVIVENRAGAAGIIAAEQVARQPNDGNTLLMAHVNSHGIAPGLQPKLAYSVERDFSPIALVGKTPTILIGGAGQPARTLPELVKLCKAQPGKIVFGSAGSGSAQHLALEIFKARAGIDVLHVPYKGSAPLMNDLMGGHVQYCFEGMTTATPLLQSGKVIALAQTLQQRSKSQPDVPTVAEQGYPGFEASIWFGMVGPGSMPAAMVQRMNRDIDKVLAMADVQEKLAQVGAEDGGGSVQRFADFMRQEQEKYAKTIKDAKIVAEG
>NZ_CP053987.1|WP_062679758.1|6404759_6406346_-|EAL-domain-containing-protein
MPRKYVIGIAIAFAAAAALLPIGFALHMSWSRAVAVEQRDLQGQAERTLKFTQGLLDQTVAMLRTLNDVPFEPCSPQHIRHLRALALKDRAVDELAYVAGRVVKCTTWGVPSYEEALVPTQYLLSNGGQLVLDAVPVVSPGIRMVAVRYGDYSALLEPGRFTEKGAADGVQLAVVLPGVGMLGTRNHPDLVLVSQALNGGKLNIDEAYLSAVARNADLAVVLLEPQSEALGALRRERLFWLPMGALAAALMIGLVAWLSRRRLSLAGELAAAVRRREFVVHYQPIIDLRSGRCVGAEALIRWIRPGGKTLRPDLFISIAEENGLMTRITEEVFRLVIRDMEDLLAEDRGMHIAVNLSAGDLKDGKVLRVLQEMLEGTAIDARQIWLEATERGFMDVDKARCIIEQAREQGHAVAIDDFGTGYSSLSYLQRLPLDTLKIDKSFVDTIGTDSATHKVTDHIIDMAKSLNLLTVAEGIERQEQADHLKNRNVDFGQGWLFGKPMPAPEFILYYRKNAATTPPPQRLPDATA
>NZ_CP053987.1|WP_062679757.1|6403866_6404715_+|IclR-family-transcriptional-regulator
MARPAGKVEKNAEQTPTAARRGIQSIEVGFRILDVIRKAGRPMPLKDIADACELTVPNVHYYLVSFQKVGVVLQHTDTGHYGLGPYALRLGLAALEQFDVFTTARPIMAEVAAITGHTVFLGVWGNKGPTIVYRVEGARSRPLLELRVGSVLPLLSSALGRNFLAHLPEASTRELLAQEMASPPPEGHGGAPGNAYTPQDVQAIRDEVRKHHLSRCRDALLPHFTSLSAPIFDMLGEMKAAITLMGPVGAIDDDLQSDTARLLSEKARSISATAGWVDPEGR
>NZ_CP053987.1|WP_062679756.1|6402041_6403694_-|MFS-transporter
MEANVAMQRIGAEQTLSRKEERQVVVASTLGTLFEWYDFFIYGTLAVFMSQVLFPQDNPTVALLAALGALAVGFIIRPLGAVMFGYLGDKLGRKYTFLITVVMMGGATVLIGCLPTYESAGHLSWILLLTLRVIQGLAVGGEYGGAVIYVAEHCEPKRRGLLTGWIQITSSAGLILSLIVILCTQAAMSAEDFRQWGWRLPFILSIVMLAISIYVRAKLHESPVFTRMKQQNRLSKNPVKETFGQWSSLRLVLLALIGVTAGQGATYFTGQFYVMIFLQQAVQLDQTSVYTLILIGFIIGAPTFVLFGWLSDRIGRKWIMMAGLFVAALGYHSMFDVLLKAGNPALAQAMQSTPVRVHADVSGGACDFGLQAAMIGSHADHKKVCVQAKKFLVGKGINFEYAAPLPGQDIAMSVGGKTVNGFDRAGYAAALTAAGYPDRADPARVDTTTIVLILVLMTAVVAMVYGPVASYLVELFPARIRYTALSFPYHIGAGIFGGIVPFTATYLAQASGNIFGGLMYPVAVTAVVGVIGSLFLPNTRAQAIDEDPAH
>NZ_CP053987.1|WP_156494246.1|6413531_6413690_-|hypothetical-protein
MRPHNGWWRASSAPRRWIDLVQEAPRWADGKAKQAPQQPAVLAGKPVQPPVA
>NZ_CP053987.1|WP_082775660.1|6413676_6413925_-|hypothetical-protein
MTSRMIGDFRVRCSVAREDDQGYRVQIWTRRIGGTAPEKCWTVPGQAPFTDLQEAEQESLQLFQGINGVRFNGEPEFAHASA
>NZ_CP053987.1|WP_062679767.1|6414155_6415502_-|serine--tRNA-ligase
MLDPILLRKDLQTVVDRLKTRGVSFDTERFNDLESRRKAVQTETESLQARRNALAKQIGQLKAKGEDASAVMAESQAVPVRLKQLEEELAALQQPLNDLLMSVPNLPHASVPLGESADDNVEVRRWLPGPAGADGNPPALPFEARDHVAVGEPLGLDFDMAAKLSGARFSFMRGPIARLHRALSQFMLDLQTGTHGYTECYTPYIVNASTLYGTGQLPKFKDDMFAVSKGGGDDDPKQDDQGKPYVREDQYLISTSEITLTSVARDTIQAAADLPIKLTAHTPCFRSEAGSGGRDTRGMIRQHQFDKVEMVQITHPEQSYEALEDMVGHAERVLQLLGLPYRVVLLCAGDMGFGAAKTYDLEVWLPAQNTWREISSVSNCETFQARRMQARFRNAQGKPEFVHTLNGSGLAVGRALVAVLENHQQADGSVLIPEALQPYMGGQTVLKP
>NZ_CP053987.1|WP_062679768.1|6415544_6416885_-|replication-associated-recombination-protein-A
MSNDLFAADPAHRPYVPLAERLRPRTLSDVVGQSHLLGPDKPLRVAFESGRPHSMIFWGPPGVGKTTLARLMADGFDAQFIAISAVLGGVKDIRDAVTVAQVAQGQGRRTILFVDEVHRFNKAQQDAFLPYVESGLFTFIGATTENPSFEVNSALLSRARVYVLQSLTPEELQLLVDRSEQALNEGREEGEIIRIAADAREQLAAWADGDARRLISAVEVVAESAQAAGRDTVDAAWLEISLSQNLRRFDKGGDAFYDQISALHKSVRGSNPDAALYWFCRMIDGGADPKYLSRRLVRMAVEDIGLADPRATDLAVNGADIYERLGSPEGELALAQAVVYMACAAKSNAVYNAYNQARKFAAEHGSAPVPIHLRNAPTKLMKQLGHGKAYRYAHDEPHGYAAAEQYFPDGLNPSFYRPTDRGLEAKIQQKLAFLRELDAQERAKKR
>NZ_CP053987.1|WP_062679769.1|6416962_6417754_-|deaminated-glutathione-amidase
MLKVALGQFAVSRVWEENAQVCIDLMERARAGGAGLLVLPEGILARDITDPQIVLKAAQPLDGPFMSRLLEASRGSQLATMMCVHVPTGEGRVWNTLVTLRDGKILSQYRKLHLYDAFTMKESTNVTPGGEIPPLLDIGGLRVGLMTCYDVRFPELARRLALDGADLLVLPAAWVRGPLKEKHWEVLVTARALENTCYVAATGECGERNIGCSMVVDPLGVVTARAGEAPALVFADIDPERLAHARKVLPVLANRRFAPPELA
>NZ_CP053987.1|WP_062679770.1|6417907_6419176_+|amino-acid-deaminase
MMNASSPAAPLDPNGKGLGAFPESCTTAGVAALRWNLLREDVSLPVAVLYEARVRHNLQWMQRFMEAYQVKLAPHGKTTMSPALFKRQIDNGAWGITLATAPQVLAAYRHGIRKILMANQLVGRANMAIIAQLLRDPAFTYCCIVDSAANAAQLGAYFGEQGLVLPVLIELGPAGGRTGVRNEAQLQAVADEIGRWPGLALAGIEVYEGVLQEEGAIRAFLRRATDALRGLAAAGRLRKSGPALISGAGSAWFDVVAEEFSQLDIGAPLEIVLRPGCYLSHDVGIYRSAAERINAHNPVARKMEPGLQPALQVWAYVQSLPEPGRAIVAMGKRDAAFDAGLPTPALLYRPGAQAPGAAPAHWKLTAMMDQHAFMQIGEGDDIQVGDMIAFDISHPCLTFDKWRQVLLVDEQYHVTDVADTFF
>NZ_CP053987.1|WP_062679771.1|6419326_6420886_+|ABC-transporter-substrate-binding-protein
MNFRTSRRGGGLNSLLLAGAIGLTALSTPALCAEPVKGGTISVATIGEPPTLDPMTSTADLVGILTQHFFETLYTFDGKWNLTPLLADKLPEVSADGLTYTIPLRQGITFHDGSKMDSSDVLASLKRWTETATRGKMAAKIIAGMEAPDANTIRITLKEPYAPLTALLAMNNSAAIIMPKAKIAPTLTEFVGTGPYQLKSRVPDQYIQLVRFDGYKQREGEPDGYGGARKQYLDEIRFVPVSNANTRVESAVAGQFDYVDSLPVESLPKLKNGRSDPVMLKPFGWPRLVLNTKQGIMSNLAVRQAVQLALNEEDMLYAAFGNKDFYKLNGDLYPEGYPWATSLGSKVYNKADAAAAKKLVDGANLQDRKIRILTSQQYEFHYKMALVAAEYLKAAGFTVDMQVVDWATLTQRRQDPAVWDIFITHSPFLPEPALIDFPSKDAPGWWDTPRRNEVLGAFNQARTQEERVKRWGDVQQAVYDEVPFIKVGDFNAQAARSPSLQGSKAVPWPYFWNAWKSAK
>NZ_CP053987.1|WP_062679772.1|6421118_6422060_+|ABC-transporter-permease
MLRYLLNRLVGLVAVMFIVATIVFVIIRVTPGDPAAVMLGPQASQQDIAALRAQLGLDQPLAVQYVSWLGKLAQGDLGQSIFMNKPVLAALADRAEPTLLLTLMSLLIASAIALPVGILSAVKRGTTLDQSVLSFSMFTSSVPSFWLGLLLMQLFSVKLGWLPVAGYGGPDASLATRLSHLILPAVVLGLVNSALITRFIRASMLDVLRDDYVRTARAKGLPESKVILKHAVRNALIPILTVLGLTTALLISGAVVTETVFGLPGVGSLVVSAVLRRDYPVIQGALLIIAAIYVLINLFIDLLYLLVDPRVRY
>NZ_CP053987.1|WP_062679773.1|6422192_6423062_+|ABC-transporter-permease
MTSATAASAGVDRWQVLRLLVSRKTVLISLIVIVVLVAAALLAPWISPYDPFKLSIMNRLKAPGATHWFGTDDFGRDVFSRVIYGGRLSLMVGFSVVIVSSVLGIALGLIAGFFRSADKFVSRLIDAMMAFPDILLAISLVAALGPSLVNVVIALGIVYTPRLARIVRASTLVIRELPFVEAARALGVPTWRIVTVHVLRNLVSPILVQGTFIFAYAILAEAGLSFLGVGVSPDIPTWGTMINAGQQYMGSADWIMIFPGIAIVLSVLSLQLVGDGLRDVLDPRLRKEL
>NZ_CP053987.1|WP_062679774.1|6423064_6424072_+|ABC-transporter-ATP-binding-protein
MTASTRDIVLSVEGLKTWFHSRDGVAKSVDGVTFDLARGETLAIVGESGSGKSVTSLSIMGLLPKPAGRIEEGRILFRDRQGAQHDLAQASPATLRRIRGAEIAMIFQEPMTSLNPLYTVGDQIAEAVLQHEGGSRADALKRAREMLERVEIPAAERRVNEYPHQMSGGMRQRVMIALALACNPAVLIADEPTTALDVTVQAQILDLLRRLQAEMNMSILFITHNLGVVAEIAHRVAVMYAGRVVEDAGVYDLFERPTHPYTRGLLSCIPTAALLASGERLRAIPGNVPSVLSLPPGCTFAPRCPLAAADCLAAVPELLPAQAAHRARCIKVNPI

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2833926 : 2871155

Pseudomonas_phage(22.73%)

terminase,tail,head,holin,portal,integrase,capsid,protease

attL 2833787:2833837|attR 2874938:2874988

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2833787:2833837	attL	NA	NA	NA	NA
WP_062681424.1\|2833926_2834967_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_075873261.1\|2834966_2835188_-	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_062681423.1\|2835276_2836356_-	hypothetical protein	NA	NA	NA	NA
WP_062681422.1\|2836357_2836600_-	hypothetical protein	NA	NA	NA	NA
WP_062681421.1\|2836721_2836967_-	hypothetical protein	NA	NA	NA	NA
WP_062681420.1\|2836966_2837347_-	hypothetical protein	A0A240F4V4	Ochrobactrum_phage	5.0e-27	51.3
WP_062681419.1\|2837343_2837724_-	hypothetical protein	NA	NA	NA	NA
WP_062681418.1\|2837720_2838230_-	hypothetical protein	H2BDF1	Pseudomonas_virus	1.0e-11	51.5
WP_131828722.1\|2838226_2839183_-	hypothetical protein	A0A0U4JP11	Pseudomonas_phage	5.6e-43	40.5
WP_131828721.1\|2839238_2839526_+	hypothetical protein	NA	NA	NA	NA
WP_062681416.1\|2839552_2839786_-	hypothetical protein	NA	NA	NA	NA
WP_172600295.1\|2840094_2840298_+	cold shock domain-containing protein	A0A2H4N7Y6	Lake_Baikal_phage	1.2e-14	59.7
WP_131828720.1\|2840380_2841301_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_062681413.1\|2841461_2842403_-	hypothetical protein	NA	NA	NA	NA
WP_062681412.1\|2842943_2843627_-	helix-turn-helix domain-containing protein	A0A1I9KG86	Aeromonas_phage	3.4e-34	37.1
WP_075873259.1\|2843713_2843911_+	hypothetical protein	NA	NA	NA	NA
WP_131828719.1\|2843924_2844173_-	hypothetical protein	NA	NA	NA	NA
WP_131828718.1\|2844367_2844658_+	hypothetical protein	NA	NA	NA	NA
WP_062681410.1\|2844741_2845257_+	hypothetical protein	B7SYH6	Stenotrophomonas_phage	8.9e-27	38.1
WP_062681409.1\|2845250_2845556_+	hypothetical protein	A0A1J0GUZ1	Halomonas_phage	1.3e-06	33.7
WP_062681408.1\|2845548_2845854_+	hypothetical protein	NA	NA	NA	NA
WP_062681407.1\|2845844_2846327_+	DUF1364 family protein	Q8W6N7	Burkholderia_virus	7.8e-17	53.7
WP_131828717.1\|2846323_2847169_+	helix-turn-helix domain-containing protein	A4JX55	Burkholderia_virus	6.3e-46	50.9
WP_062681405.1\|2847140_2847899_+	hypothetical protein	NA	NA	NA	NA
WP_062681404.1\|2847904_2848318_+	hypothetical protein	NA	NA	NA	NA
WP_075873257.1\|2848317_2848995_+	hypothetical protein	Q3HR05	Burkholderia_phage	3.5e-31	48.2
WP_172871166.1\|2849009_2849921_-	hypothetical protein	NA	NA	NA	NA
WP_062681402.1\|2850383_2850755_+	hypothetical protein	NA	NA	NA	NA
WP_165695612.1\|2850874_2851105_+	HNH endonuclease	NA	NA	NA	NA
WP_062681401.1\|2851215_2851644_+	hypothetical protein	NA	NA	NA	NA
WP_062681400.1\|2851621_2853391_+\|terminase	terminase large subunit	A0A0U4B0M7	Pseudomonas_phage	1.8e-265	74.7
WP_062681399.1\|2853387_2854686_+\|portal	phage portal protein	G0ZT36	Aeromonas_phage	1.2e-144	61.4
WP_062681398.1\|2854697_2855567_+\|protease	Clp protease ClpP	A0A0U4B0F3	Pseudomonas_phage	2.6e-79	52.7
WP_062681397.1\|2855577_2856756_+\|capsid	phage major capsid protein	A0A2H4PI18	Pseudomonas_phage	3.9e-102	53.8
WP_062681396.1\|2856803_2857028_+	hypothetical protein	NA	NA	NA	NA
WP_062681395.1\|2857030_2857360_+\|head,tail	phage gp6-like head-tail connector protein	H2BDB3	Pseudomonas_virus	1.0e-20	57.4
WP_062681467.1\|2857359_2857734_+\|head,tail	head-tail adaptor protein	H2BDB4	Pseudomonas_virus	2.6e-28	50.8
WP_156494253.1\|2857799_2857955_+	hypothetical protein	NA	NA	NA	NA
WP_062681394.1\|2857951_2858437_+	hypothetical protein	NA	NA	NA	NA
WP_062681393.1\|2858436_2858808_+	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_075873267.1\|2858869_2859367_+	hypothetical protein	NA	NA	NA	NA
WP_062681391.1\|2859377_2859710_+	hypothetical protein	NA	NA	NA	NA
WP_062681390.1\|2859781_2860039_+	hypothetical protein	NA	NA	NA	NA
WP_062681389.1\|2860072_2863033_+\|tail	phage tail tape measure protein	A5H1M1	Xanthomonas_virus	6.0e-27	32.5
WP_062681388.1\|2863034_2863382_+	hypothetical protein	Q2NPH3	Xanthomonas_virus	2.1e-08	33.3
WP_062681387.1\|2863383_2863860_+	DUF1833 family protein	I7GYA2	Xanthomonas_virus	9.1e-10	25.9
WP_062681386.1\|2863861_2864248_+	hypothetical protein	NA	NA	NA	NA
WP_062681385.1\|2864235_2868192_+	hypothetical protein	I7HDJ4	Xanthomonas_virus	9.2e-47	29.1
WP_062681384.1\|2868193_2868865_+	hypothetical protein	NA	NA	NA	NA
WP_062681383.1\|2868864_2869383_+	hypothetical protein	NA	NA	NA	NA
WP_062681382.1\|2869461_2869815_+	hypothetical protein	NA	NA	NA	NA
WP_062681381.1\|2869825_2870095_+\|holin	phage holin family protein	NA	NA	NA	NA
WP_062681380.1\|2870091_2870625_+	hypothetical protein	A0A0H5AXX8	Pseudomonas_phage	7.5e-29	47.7
WP_062681466.1\|2870651_2871155_+	DUF2514 family protein	Q3HQV1	Burkholderia_phage	2.2e-06	37.8
2874938:2874988	attR	NA	NA	NA	NA

DBSCAN-SWA_2

4113573 : 4121975

Moraxella_phage(28.57%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_062682610.1\|4113573_4114158_+	YigZ family protein	A0A1X9I5T8	Streptococcus_phage	3.3e-22	37.0
WP_062682555.1\|4114334_4114709_-	thioredoxin family protein	V9SJ74	Achromobacter_phage	5.5e-10	28.9
WP_062682556.1\|4114851_4115856_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_062682557.1\|4116083_4117376_-	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	9.3e-65	35.6
WP_062682558.1\|4117498_4118530_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	2.1e-91	51.4
WP_062682559.1\|4118720_4119359_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_062682560.1\|4119538_4120297_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	4.9e-66	50.8
WP_062682561.1\|4120281_4121106_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	4.3e-31	45.8
WP_062682562.1\|4121123_4121975_+	peptidoglycan DD-metalloendopeptidase family protein	A0A292GJG6	Xanthomonas_phage	4.9e-14	40.2

DBSCAN-SWA_3

5870409 : 5894116

Pseudomonas_phage(43.75%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_062682989.1\|5870409_5871507_-	DUF4043 family protein	A0A0S3UG53	Pseudomonas_phage	2.7e-12	25.0
WP_075873244.1\|5871518_5872271_-	lipase chaperone	NA	NA	NA	NA
WP_062682991.1\|5872382_5874452_-	hypothetical protein	A0A248SKZ2	Klebsiella_phage	1.4e-33	26.0
WP_062682992.1\|5874448_5875894_-	hypothetical protein	X5IGD1	Pseudomonas_phage	7.4e-79	38.0
WP_062682993.1\|5875835_5876294_-	hypothetical protein	A0A2I7RPR2	Vibrio_phage	2.0e-09	34.3
WP_131828710.1\|5876388_5876838_-	hypothetical protein	NA	NA	NA	NA
WP_131828711.1\|5876843_5877026_-	hypothetical protein	NA	NA	NA	NA
WP_062682995.1\|5877124_5877547_-	hypothetical protein	NA	NA	NA	NA
WP_082775836.1\|5877543_5877918_-	hypothetical protein	R9ZZU8	Cellulophaga_phage	1.9e-31	63.5
WP_062682996.1\|5878286_5878502_-	hypothetical protein	NA	NA	NA	NA
WP_062682997.1\|5878504_5879860_-	replicative DNA helicase	H2BD70	Pseudomonas_phage	5.9e-62	36.0
WP_131828712.1\|5879856_5880774_-	hypothetical protein	NA	NA	NA	NA
WP_062683065.1\|5880770_5881175_-	DUF1364 family protein	Q3HR02	Burkholderia_phage	1.6e-23	50.9
WP_082775832.1\|5881167_5881785_-	HNH endonuclease	A0A2I7RT07	Vibrio_phage	1.1e-20	40.0
WP_062683000.1\|5881784_5882240_-	recombination protein NinB	NA	NA	NA	NA
WP_087881359.1\|5882241_5882508_-	DNA-binding protein	E5E3P2	Burkholderia_phage	9.5e-17	51.9
WP_156494257.1\|5882618_5882792_+	hypothetical protein	NA	NA	NA	NA
WP_062683002.1\|5882897_5883173_+	CRISPR-associated endonuclease Cas2	NA	NA	NA	NA
WP_062683003.1\|5883174_5883369_-	hypothetical protein	NA	NA	NA	NA
WP_062683004.1\|5883391_5883685_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_165695611.1\|5883683_5884112_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_131828714.1\|5884593_5885109_+	hypothetical protein	NA	NA	NA	NA
WP_082775834.1\|5885278_5886064_+	pentapeptide repeat-containing protein	A0A2P9HXG2	Yersinia_phage	5.7e-09	56.9
WP_062683005.1\|5886101_5886347_+	hypothetical protein	NA	NA	NA	NA
WP_088146988.1\|5886349_5886718_+	hypothetical protein	NA	NA	NA	NA
WP_062683007.1\|5886803_5887169_+	hypothetical protein	NA	NA	NA	NA
WP_087881360.1\|5887168_5887336_+	hypothetical protein	NA	NA	NA	NA
WP_062683008.1\|5887337_5888438_+	hypothetical protein	Q9MC69	Pseudomonas_phage	7.7e-36	46.7
WP_087881363.1\|5888538_5889219_+	ERF family protein	B5WZW4	Pseudomonas_phage	2.9e-78	92.5
WP_062683009.1\|5889218_5889854_+	YqaJ viral recombinase family protein	A0A0U2BXF3	Paracoccus_phage	2.0e-20	38.5
WP_062683010.1\|5890802_5891045_+	hypothetical protein	NA	NA	NA	NA
WP_131828715.1\|5891041_5892019_+	hypothetical protein	A0A2H5BQE8	Pseudomonas_phage	1.2e-37	77.0
WP_062683012.1\|5892011_5892524_+	class I SAM-dependent methyltransferase	A0A0N7IRF6	Acinetobacter_phage	9.7e-58	66.0
WP_062683013.1\|5892516_5892702_+	hypothetical protein	NA	NA	NA	NA
WP_062683014.1\|5892698_5892896_+	excisionase family protein	NA	NA	NA	NA
WP_062683015.1\|5892892_5894116_+	DUF3596 domain-containing protein	A0A1W6JTA0	Pseudomonas_phage	4.8e-63	37.7

Anti-CRISPR protein detection

Acr_ID: NZ_CP053987.1|WP_062681378.1|2872352_2872805_-|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP053987.1|WP_062681378.1|2872352_2872805_-|hypothetical-protein

2872352_2872805_-

150 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|33	0.5496688741721855	1	0.993421052631579

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP053987

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information