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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP054010 Prevotella melaninogenica strain FDAARGOS_760 chromosome 1, complete sequence 9 crisprs cas1,cas9,cas3,PrimPol,DEDDh 1 18 2 0
NZ_CP054011 Prevotella melaninogenica strain FDAARGOS_760 chromosome 2, complete sequence 8 crisprs DEDDh,csa3,RT,WYL 0 0 4 1

Results visualization

1. NZ_CP054010
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP054010_1 9440-11486 TypeII NA
26 spacers
cas2,cas1,cas9

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP054010_2 506582-506681 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP054010_3 870239-870379 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP054010_4 878463-878584 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP054010_5 892085-892203 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP054010_6 897347-897436 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP054010_7 957445-957526 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP054010_8 1011245-1011352 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP054010_9 1094732-1094851 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP054010_1 1.26|11410|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 11410-11439 30 NZ_CP054010.1 621209-621238 0 1.0

1. spacer 1.26|11410|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to position: 621209-621238, mismatch: 0, identity: 1.0

ctgagcaccagctaaaggctgcgaaatggg	CRISPR spacer
ctgagcaccagctaaaggctgcgaaatggg	Protospacer
******************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP054010_1 1.6|9871|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 9871-9900 30 MN693375 Marine virus AFVG_25M113, complete genome 28612-28641 4 0.867
NZ_CP054010_1 1.2|9564|29|NZ_CP054010|CRISPRCasFinder,PILER-CR 9564-9592 29 NC_011246 Borrelia recurrentis A1 plasmid pl124, complete sequence 6246-6274 5 0.828
NZ_CP054010_1 1.2|9564|29|NZ_CP054010|CRISPRCasFinder,PILER-CR 9564-9592 29 NC_011247 Borrelia duttonii Ly plasmid pl165, complete sequence 44720-44748 5 0.828
NZ_CP054010_1 1.6|9871|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 9871-9900 30 NZ_CP053834 Arcobacter cloacae strain LMG 26153 plasmid pACLO, complete sequence 71237-71266 6 0.8
NZ_CP054010_1 1.6|9871|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 9871-9900 30 NZ_CP010110 Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-4, complete sequence 53467-53496 6 0.8
NZ_CP054010_1 1.6|9871|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 9871-9900 30 MN698243 Pelagibacter phage HTVC104P, complete genome 10291-10320 6 0.8
NZ_CP054010_1 1.9|10102|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 10102-10131 30 CP024688 Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-4-144K, complete sequence 49243-49272 6 0.8
NZ_CP054010_1 1.12|10333|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 10333-10362 30 NC_023007 Bacillus phage vB_BanS-Tsamsa, complete genome 130167-130196 6 0.8
NZ_CP054010_1 1.14|10487|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 10487-10516 30 AP014234 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C93-MedDCM-OCT-S32-C16, *** SEQUENCING IN PROGRESS *** 18783-18812 6 0.8
NZ_CP054010_1 1.14|10487|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 10487-10516 30 AP014235 Uncultured Mediterranean phage uvMED isolate uvMED-GF-C93-MedDCM-OCT-S38-C9, *** SEQUENCING IN PROGRESS *** 20782-20811 6 0.8
NZ_CP054010_1 1.14|10487|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 10487-10516 30 MH579717 Pelagibacter phage HTVC021P, complete genome 13500-13529 6 0.8
NZ_CP054010_1 1.15|10564|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 10564-10593 30 NZ_CP046318 Campylobacter coli strain FDAARGOS_735 plasmid unnamed1, complete sequence 35603-35632 6 0.8
NZ_CP054010_1 1.15|10564|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 10564-10593 30 NZ_CP011016 Campylobacter coli strain FB1 plasmid pCC42, complete sequence 18388-18417 6 0.8
NZ_CP054010_1 1.15|10564|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 10564-10593 30 NZ_CP040242 Campylobacter coli strain S9 plasmid pCcS9_3, complete sequence 17119-17148 6 0.8
NZ_CP054010_1 1.15|10564|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 10564-10593 30 NZ_CP028188 Campylobacter coli strain CFSAN054106 plasmid pGMI16-001, complete sequence 6530-6559 6 0.8
NZ_CP054010_1 1.23|11179|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 11179-11208 30 MG065692 UNVERIFIED: Campylobacter phage C13, complete genome 46014-46043 6 0.8
NZ_CP054010_1 1.24|11256|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 11256-11285 30 MH598807 Pelagibacter phage HTVC120P, complete genome 38213-38242 6 0.8
NZ_CP054010_1 1.24|11256|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 11256-11285 30 MN693171 Marine virus AFVG_25M555, complete genome 25683-25712 6 0.8
NZ_CP054010_1 1.24|11256|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 11256-11285 30 AP013400 Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-U-MedDCM-OCT-S30-C37 34601-34630 6 0.8
NZ_CP054010_1 1.3|9640|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 9640-9669 30 KF156338 Synechococcus phage S-MbCM7, complete genome 93212-93241 7 0.767
NZ_CP054010_1 1.10|10179|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 10179-10208 30 NC_014534 Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence 202876-202905 7 0.767
NZ_CP054010_1 1.10|10179|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 10179-10208 30 NZ_CP053952 Bacillus cereus strain FDAARGOS_798 plasmid unnamed1, complete sequence 12009-12038 7 0.767
NZ_CP054010_1 1.10|10179|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 10179-10208 30 NZ_CP053949 Bacillus cereus strain FDAARGOS_799 plasmid unnamed1, complete sequence 142159-142188 7 0.767
NZ_CP054010_1 1.11|10256|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 10256-10285 30 NZ_CP013139 Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence 588579-588608 7 0.767
NZ_CP054010_1 1.11|10256|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 10256-10285 30 NZ_CP031836 Lactobacillus amylolyticus strain L5 plasmid p1, complete sequence 98801-98830 7 0.767
NZ_CP054010_1 1.11|10256|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 10256-10285 30 NZ_CP020458 Lactobacillus amylolyticus strain L6 plasmid pL6-1, complete sequence 100697-100726 7 0.767
NZ_CP054010_1 1.21|11025|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 11025-11054 30 MG592531 Vibrio phage 1.164.O._10N.261.51.A7, partial genome 27402-27431 7 0.767
NZ_CP054010_1 1.22|11102|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 11102-11131 30 NZ_CP045339 Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence 357374-357403 7 0.767
NZ_CP054010_1 1.24|11256|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 11256-11285 30 MN693078 Marine virus AFVG_25M36, complete genome 11482-11511 7 0.767
NZ_CP054010_1 1.24|11256|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 11256-11285 30 MN693355 Marine virus AFVG_25M40, complete genome 12239-12268 7 0.767
NZ_CP054010_1 1.24|11256|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 11256-11285 30 MT774408 CrAssphage cr130_1, complete genome 61439-61468 7 0.767
NZ_CP054010_1 1.5|9794|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 9794-9823 30 NZ_CP046723 Pantoea agglomerans strain ASB05 plasmid pASB05p1, complete sequence 363136-363165 8 0.733
NZ_CP054010_1 1.5|9794|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 9794-9823 30 NZ_CP016890 Pantoea agglomerans strain C410P1 plasmid unnamed1, complete sequence 284345-284374 8 0.733
NZ_CP054010_1 1.5|9794|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 9794-9823 30 NZ_CP034149 Pantoea agglomerans strain L15 plasmid pPagL15_1, complete sequence 334758-334787 8 0.733
NZ_CP054010_1 1.5|9794|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 9794-9823 30 NZ_CP031650 Pantoea agglomerans strain TH81 plasmid unnamed1, complete sequence 158965-158994 8 0.733
NZ_CP054010_1 1.6|9871|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 9871-9900 30 NZ_LR134428 Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 19 63798-63827 8 0.733
NZ_CP054010_1 1.9|10102|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 10102-10131 30 MN694063 Marine virus AFVG_250M885, complete genome 36462-36491 8 0.733
NZ_CP054010_1 1.11|10256|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 10256-10285 30 KT962247 Cellulophaga phage phi17:2_18, complete genome 136895-136924 8 0.733
NZ_CP054010_1 1.11|10256|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 10256-10285 30 KT962246 Cellulophaga phage phi4:1_18, complete genome 136417-136446 8 0.733
NZ_CP054010_1 1.11|10256|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 10256-10285 30 KT962245 Cellulophaga phage phi4:1_13, complete genome 136417-136446 8 0.733
NZ_CP054010_1 1.11|10256|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 10256-10285 30 KC821632 Cellulophaga phage phi4:1, complete genome 136417-136446 8 0.733
NZ_CP054010_1 1.11|10256|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 10256-10285 30 NC_021798 Cellulophaga phage phi17:2, complete genome 136895-136924 8 0.733
NZ_CP054010_1 1.13|10410|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 10410-10439 30 NZ_CP022416 Sulfitobacter pseudonitzschiae strain SMR1 plasmid pSMR1-1, complete sequence 113836-113865 8 0.733
NZ_CP054010_1 1.13|10410|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 10410-10439 30 NZ_CP022418 Sulfitobacter pseudonitzschiae strain SMR1 plasmid pSMR1-3, complete sequence 164903-164932 8 0.733
NZ_CP054010_1 1.14|10487|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 10487-10516 30 MN013077 Klebsiella phage vB_KaeM_KaOmega, complete genome 137399-137428 8 0.733
NZ_CP054010_1 1.15|10564|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 10564-10593 30 AP014318 Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S32-C66, *** SEQUENCING IN PROGRESS *** 692-721 8 0.733
NZ_CP054010_1 1.15|10564|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 10564-10593 30 GU075905 Prochlorococcus phage P-HM2, complete genome 2084-2113 8 0.733
NZ_CP054010_1 1.16|10641|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 10641-10670 30 NZ_CP030090 Lactobacillus reuteri strain YSJL-12 plasmid unnamed1, complete sequence 34479-34508 8 0.733
NZ_CP054010_1 1.20|10947|31|NZ_CP054010|CRISPRCasFinder,PILER-CR 10947-10977 31 MG592531 Vibrio phage 1.164.O._10N.261.51.A7, partial genome 27402-27432 8 0.742
NZ_CP054010_1 1.24|11256|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 11256-11285 30 NC_009812 Listeria phage B025, complete genome 33992-34021 8 0.733
NZ_CP054010_1 1.6|9871|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 9871-9900 30 NZ_CP044300 Escherichia coli strain P59A plasmid pP59A-2, complete sequence 10232-10261 9 0.7
NZ_CP054010_1 1.6|9871|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 9871-9900 30 NZ_CP046008 Escherichia coli strain 1919D62 plasmid p1919D62-2, complete sequence 79620-79649 9 0.7
NZ_CP054010_1 1.6|9871|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 9871-9900 30 NZ_CP051133 Enterobacter hormaechei strain AMS-38 plasmid pAMS-38a, complete sequence 39412-39441 9 0.7
NZ_CP054010_1 1.6|9871|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 9871-9900 30 MF417868 Uncultured Caudovirales phage clone 7AX_1, partial genome 26330-26359 9 0.7
NZ_CP054010_1 1.6|9871|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 9871-9900 30 NZ_CP010244 Escherichia coli strain S56 plasmid B, complete sequence 9695-9724 9 0.7
NZ_CP054010_1 1.6|9871|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 9871-9900 30 NZ_CP042573 Enterobacter hormaechei strain E5 plasmid pE5_002, complete sequence 96719-96748 9 0.7
NZ_CP054010_1 1.6|9871|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 9871-9900 30 NZ_CP033252 Escherichia coli strain ECCHD184 plasmid pTB212, complete sequence 95078-95107 9 0.7
NZ_CP054010_1 1.13|10410|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 10410-10439 30 NZ_CP021916 Sagittula sp. P11 plasmid unnamed3, complete sequence 84162-84191 9 0.7
NZ_CP054010_1 1.13|10410|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 10410-10439 30 NZ_CP021915 Sagittula sp. P11 plasmid unnamed2, complete sequence 44266-44295 9 0.7
NZ_CP054010_1 1.15|10564|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 10564-10593 30 MN693705 Marine virus AFVG_250M220, complete genome 27559-27588 9 0.7
NZ_CP054010_1 1.18|10795|29|NZ_CP054010|CRISPRCasFinder,PILER-CR 10795-10823 29 MN694361 Marine virus AFVG_250M609, complete genome 30125-30153 9 0.69
NZ_CP054010_1 1.22|11102|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 11102-11131 30 KC206276 Escherichia phage EC1-UPM, complete genome 37290-37319 9 0.7
NZ_CP054010_1 1.23|11179|30|NZ_CP054010|CRISPRCasFinder,PILER-CR 11179-11208 30 AP014358 Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S39-C94, *** SEQUENCING IN PROGRESS *** 8548-8577 9 0.7

1. spacer 1.6|9871|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to MN693375 (Marine virus AFVG_25M113, complete genome) position: , mismatch: 4, identity: 0.867

tgataa-agagaaaataaacaatcaatataa	CRISPR spacer
-gataactgagaaaacaaacaatcaatatat	Protospacer
 *****  *******.************** 

2. spacer 1.2|9564|29|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to NC_011246 (Borrelia recurrentis A1 plasmid pl124, complete sequence) position: , mismatch: 5, identity: 0.828

atagtattaattaaaattatagtcaaatg	CRISPR spacer
attttattaattaaaattataatctaata	Protospacer
**  *****************.** ***.

3. spacer 1.2|9564|29|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to NC_011247 (Borrelia duttonii Ly plasmid pl165, complete sequence) position: , mismatch: 5, identity: 0.828

atagtattaattaaaattatagtcaaatg	CRISPR spacer
attttattaattaaaattataatctaata	Protospacer
**  *****************.** ***.

4. spacer 1.6|9871|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to NZ_CP053834 (Arcobacter cloacae strain LMG 26153 plasmid pACLO, complete sequence) position: , mismatch: 6, identity: 0.8

tgataaagagaaaataaacaatcaatataa	CRISPR spacer
ggataaagagaaaataaaaaataatgaaaa	Protospacer
 ***************** *** *  * **

5. spacer 1.6|9871|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to NZ_CP010110 (Bacillus thuringiensis serovar indiana strain HD521 plasmid pBTHD521-4, complete sequence) position: , mismatch: 6, identity: 0.8

tgataaagagaaaataaacaatcaatataa	CRISPR spacer
tcataaagagaaaatatataatcaaaaaat	Protospacer
* ************** *.****** * * 

6. spacer 1.6|9871|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to MN698243 (Pelagibacter phage HTVC104P, complete genome) position: , mismatch: 6, identity: 0.8

tgataaagagaaaataaacaatcaatataa	CRISPR spacer
ttaataagagaatataaacaaacaatatca	Protospacer
* *  ******* ******** ****** *

7. spacer 1.9|10102|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to CP024688 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-4-144K, complete sequence) position: , mismatch: 6, identity: 0.8

catttgaagcaggagaatcaatattagcgg	CRISPR spacer
agtttgaagcaggaggatcagtattagcat	Protospacer
 .*************.****.*******. 

8. spacer 1.12|10333|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to NC_023007 (Bacillus phage vB_BanS-Tsamsa, complete genome) position: , mismatch: 6, identity: 0.8

tttaagatgttacgcttatacttcaattta---	CRISPR spacer
attaagatgttactcttaaacttc---ttagtc	Protospacer
 ************ **** *****   ***   

9. spacer 1.14|10487|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to AP014234 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C93-MedDCM-OCT-S32-C16, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.8

ttgtttcgtaaagatggtcttcccactttt	CRISPR spacer
aattttcgtaaagatgttcttcctacttat	Protospacer
   ************* ******.**** *

10. spacer 1.14|10487|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to AP014235 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C93-MedDCM-OCT-S38-C9, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.8

ttgtttcgtaaagatggtcttcccactttt	CRISPR spacer
aattttcgtaaagatgttcttcctacttat	Protospacer
   ************* ******.**** *

11. spacer 1.14|10487|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to MH579717 (Pelagibacter phage HTVC021P, complete genome) position: , mismatch: 6, identity: 0.8

ttgtttcgtaaagatggtcttcccactttt	CRISPR spacer
aattttcgtaaagatgttcttcctacttat	Protospacer
   ************* ******.**** *

12. spacer 1.15|10564|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to NZ_CP046318 (Campylobacter coli strain FDAARGOS_735 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

tggatagtatgtatattctctttctcggca	CRISPR spacer
ttgatagtatggatattttctttctctacc	Protospacer
* ********* *****.******** .* 

13. spacer 1.15|10564|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to NZ_CP011016 (Campylobacter coli strain FB1 plasmid pCC42, complete sequence) position: , mismatch: 6, identity: 0.8

tggatagtatgtatattctctttctcggca	CRISPR spacer
ttgatagtatggatattttctttctctacc	Protospacer
* ********* *****.******** .* 

14. spacer 1.15|10564|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to NZ_CP040242 (Campylobacter coli strain S9 plasmid pCcS9_3, complete sequence) position: , mismatch: 6, identity: 0.8

tggatagtatgtatattctctttctcggca	CRISPR spacer
ttgatagtatggatattttctttctctacc	Protospacer
* ********* *****.******** .* 

15. spacer 1.15|10564|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to NZ_CP028188 (Campylobacter coli strain CFSAN054106 plasmid pGMI16-001, complete sequence) position: , mismatch: 6, identity: 0.8

tggatagtatgtatattctctttctcggca	CRISPR spacer
ttgatagtatggatattttctttctctacc	Protospacer
* ********* *****.******** .* 

16. spacer 1.23|11179|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to MG065692 (UNVERIFIED: Campylobacter phage C13, complete genome) position: , mismatch: 6, identity: 0.8

tagggcaattaagaaagcaactcttaataa	CRISPR spacer
tgctacaattattaaagcaactcttaataa	Protospacer
*.  .******  *****************

17. spacer 1.24|11256|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to MH598807 (Pelagibacter phage HTVC120P, complete genome) position: , mismatch: 6, identity: 0.8

ttatgttaaatcaatagacgaaatgaaatg	CRISPR spacer
tattcttaaatcaatagaagaaatgaaaaa	Protospacer
*  * ************* ********* .

18. spacer 1.24|11256|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to MN693171 (Marine virus AFVG_25M555, complete genome) position: , mismatch: 6, identity: 0.8

ttatgttaaatcaatagacgaaatgaaatg	CRISPR spacer
tttgtttaaagcaatagacgaaatgaaaaa	Protospacer
**   ***** ***************** .

19. spacer 1.24|11256|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to AP013400 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-U-MedDCM-OCT-S30-C37) position: , mismatch: 6, identity: 0.8

ttatgttaaatcaatagacgaaatgaaatg	CRISPR spacer
tttatttaaagcaatagatgaaatgaaatc	Protospacer
**   ***** *******.********** 

20. spacer 1.3|9640|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to KF156338 (Synechococcus phage S-MbCM7, complete genome) position: , mismatch: 7, identity: 0.767

aaacacagaagaatcacgaataccagcagg	CRISPR spacer
attaccagaagcatcacgaataacagcagt	Protospacer
*    ****** ********** ****** 

21. spacer 1.10|10179|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to NC_014534 (Gloeothece verrucosa PCC 7822 plasmid Cy782202, complete sequence) position: , mismatch: 7, identity: 0.767

aaaaatagcacaataatagactataaaacg	CRISPR spacer
aaaaatagcccaataatagagtagtagaaa	Protospacer
********* ********** **  *.* .

22. spacer 1.10|10179|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to NZ_CP053952 (Bacillus cereus strain FDAARGOS_798 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

aaaaatagcacaataatagactataaaacg	CRISPR spacer
acacctagcacagtaataaactataaaatt	Protospacer
* *  *******.*****.*********. 

23. spacer 1.10|10179|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to NZ_CP053949 (Bacillus cereus strain FDAARGOS_799 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.767

aaaaatagcacaataatagactataaaacg	CRISPR spacer
acacctagcacagtaataaactataaaatt	Protospacer
* *  *******.*****.*********. 

24. spacer 1.11|10256|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to NZ_CP013139 (Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence) position: , mismatch: 7, identity: 0.767

ttgcttcctcagctgatttaatagcatttg	CRISPR spacer
ttgcttgctcagctgatttaatgctgcttt	Protospacer
****** ***************. ...** 

25. spacer 1.11|10256|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to NZ_CP031836 (Lactobacillus amylolyticus strain L5 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.767

ttgcttcctcagctgatttaatagcatttg	CRISPR spacer
ttgcttcctcagctgaattgataaaaccgg	Protospacer
**************** **.***. *.. *

26. spacer 1.11|10256|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to NZ_CP020458 (Lactobacillus amylolyticus strain L6 plasmid pL6-1, complete sequence) position: , mismatch: 7, identity: 0.767

ttgcttcctcagctgatttaatagcatttg	CRISPR spacer
ttgcttcctcagctgaattgataaaaccgg	Protospacer
**************** **.***. *.. *

27. spacer 1.21|11025|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to MG592531 (Vibrio phage 1.164.O._10N.261.51.A7, partial genome) position: , mismatch: 7, identity: 0.767

taacttggttgaattgctcaacaggcaagt	CRISPR spacer
taacttggttgaaatgctcaaccacgaaaa	Protospacer
************* ******** .  **. 

28. spacer 1.22|11102|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to NZ_CP045339 (Vibrio sp. THAF190c plasmid pTHAF190c_a, complete sequence) position: , mismatch: 7, identity: 0.767

gaaagtagctgaagcacggttagcagaagt	CRISPR spacer
caaagtagctgaagctcgtttagctaagct	Protospacer
 ************** ** ***** .*. *

29. spacer 1.24|11256|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to MN693078 (Marine virus AFVG_25M36, complete genome) position: , mismatch: 7, identity: 0.767

ttatgttaaatcaatagacgaaatgaaatg	CRISPR spacer
tttatttaaagcaatagatgaaatgaaaaa	Protospacer
**   ***** *******.********* .

30. spacer 1.24|11256|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to MN693355 (Marine virus AFVG_25M40, complete genome) position: , mismatch: 7, identity: 0.767

ttatgttaaatcaatagacgaaatgaaatg	CRISPR spacer
tttatttaaagcaatagatgaaatgaaaaa	Protospacer
**   ***** *******.********* .

31. spacer 1.24|11256|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to MT774408 (CrAssphage cr130_1, complete genome) position: , mismatch: 7, identity: 0.767

ttatgttaaatcaatagacgaaatgaaatg	CRISPR spacer
tattgagaaatcgatagacgaaatgaaaga	Protospacer
*  **  *****.*************** .

32. spacer 1.5|9794|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to NZ_CP046723 (Pantoea agglomerans strain ASB05 plasmid pASB05p1, complete sequence) position: , mismatch: 8, identity: 0.733

taagcgttattatccgctgcaacgcgagcc	CRISPR spacer
gatgcgtcattatctgctgcaacgcgctgg	Protospacer
 * ****.******.***********    

33. spacer 1.5|9794|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to NZ_CP016890 (Pantoea agglomerans strain C410P1 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

taagcgttattatccgctgcaacgcgagcc	CRISPR spacer
gatgcgtcattatctgctgcaacgcgctgg	Protospacer
 * ****.******.***********    

34. spacer 1.5|9794|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to NZ_CP034149 (Pantoea agglomerans strain L15 plasmid pPagL15_1, complete sequence) position: , mismatch: 8, identity: 0.733

taagcgttattatccgctgcaacgcgagcc	CRISPR spacer
gatgcgtcattatctgctgcaacgcgctgg	Protospacer
 * ****.******.***********    

35. spacer 1.5|9794|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to NZ_CP031650 (Pantoea agglomerans strain TH81 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

taagcgttattatccgctgcaacgcgagcc	CRISPR spacer
gatgcgtcattatctgctgcaacgcgctgg	Protospacer
 * ****.******.***********    

36. spacer 1.6|9871|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to NZ_LR134428 (Legionella adelaidensis strain NCTC12735 genome assembly, plasmid: 19) position: , mismatch: 8, identity: 0.733

tgataaagagaaaataaacaatcaatataa	CRISPR spacer
ttttaaatagaaaataaccaatcaattgct	Protospacer
*  **** ********* ********    

37. spacer 1.9|10102|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to MN694063 (Marine virus AFVG_250M885, complete genome) position: , mismatch: 8, identity: 0.733

catttgaagcaggagaatcaatattagcgg	CRISPR spacer
ggtttgtagcaggagaaacaatatttcctc	Protospacer
 .**** ********** *******  *  

38. spacer 1.11|10256|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to KT962247 (Cellulophaga phage phi17:2_18, complete genome) position: , mismatch: 8, identity: 0.733

ttgcttcctcagctgatttaatagcatttg	CRISPR spacer
cagattcctcagcagatttaatagcagaaa	Protospacer
. * ********* ************   .

39. spacer 1.11|10256|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to KT962246 (Cellulophaga phage phi4:1_18, complete genome) position: , mismatch: 8, identity: 0.733

ttgcttcctcagctgatttaatagcatttg	CRISPR spacer
cagattcctcagcagatttaatagcagaaa	Protospacer
. * ********* ************   .

40. spacer 1.11|10256|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to KT962245 (Cellulophaga phage phi4:1_13, complete genome) position: , mismatch: 8, identity: 0.733

ttgcttcctcagctgatttaatagcatttg	CRISPR spacer
cagattcctcagcagatttaatagcagaaa	Protospacer
. * ********* ************   .

41. spacer 1.11|10256|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to KC821632 (Cellulophaga phage phi4:1, complete genome) position: , mismatch: 8, identity: 0.733

ttgcttcctcagctgatttaatagcatttg	CRISPR spacer
cagattcctcagcagatttaatagcagaaa	Protospacer
. * ********* ************   .

42. spacer 1.11|10256|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to NC_021798 (Cellulophaga phage phi17:2, complete genome) position: , mismatch: 8, identity: 0.733

ttgcttcctcagctgatttaatagcatttg	CRISPR spacer
cagattcctcagcagatttaatagcagaaa	Protospacer
. * ********* ************   .

43. spacer 1.13|10410|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to NZ_CP022416 (Sulfitobacter pseudonitzschiae strain SMR1 plasmid pSMR1-1, complete sequence) position: , mismatch: 8, identity: 0.733

aacagaacgcaggcagcaccacaacaagca	CRISPR spacer
gcccgaacgcaggcagcaccgcaacccgtc	Protospacer
. * ****************.****  *. 

44. spacer 1.13|10410|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to NZ_CP022418 (Sulfitobacter pseudonitzschiae strain SMR1 plasmid pSMR1-3, complete sequence) position: , mismatch: 8, identity: 0.733

aacagaacgcaggcagcaccacaacaagca	CRISPR spacer
gcccgaacgcaggcagcaccgcaacccgtc	Protospacer
. * ****************.****  *. 

45. spacer 1.14|10487|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to MN013077 (Klebsiella phage vB_KaeM_KaOmega, complete genome) position: , mismatch: 8, identity: 0.733

ttgtttcgtaaagatggtcttcccactttt	CRISPR spacer
atgttccgtaaagatggtcttcacccaccg	Protospacer
 ****.**************** * * .. 

46. spacer 1.15|10564|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to AP014318 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S32-C66, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 8, identity: 0.733

tggatagtatgtatattctctttctcggca	CRISPR spacer
cggataatatgtatatcctctttctttaag	Protospacer
.*****.*********.********. . .

47. spacer 1.15|10564|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to GU075905 (Prochlorococcus phage P-HM2, complete genome) position: , mismatch: 8, identity: 0.733

tggatagtatgtatattctctttctcggca	CRISPR spacer
tggataggatgtatattatctttgatatga	Protospacer
******* ********* *****  ..  *

48. spacer 1.16|10641|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to NZ_CP030090 (Lactobacillus reuteri strain YSJL-12 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

ttgcaatctctacaccgtacttcttttcat	CRISPR spacer
gataaatctcttcaccgtacttctctttgt	Protospacer
    ******* ************.**..*

49. spacer 1.20|10947|31|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to MG592531 (Vibrio phage 1.164.O._10N.261.51.A7, partial genome) position: , mismatch: 8, identity: 0.742

taacttggttgaattgctcaacaggcaagta	CRISPR spacer
taacttggttgaaatgctcaaccacgaaaac	Protospacer
************* ******** .  **.  

50. spacer 1.24|11256|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to NC_009812 (Listeria phage B025, complete genome) position: , mismatch: 8, identity: 0.733

ttatgttaaatcaatagacgaaatgaaatg	CRISPR spacer
aggttcgaaatcaatagacgaaatgacata	Protospacer
  .* . ******************* **.

51. spacer 1.6|9871|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to NZ_CP044300 (Escherichia coli strain P59A plasmid pP59A-2, complete sequence) position: , mismatch: 9, identity: 0.7

tgataaagagaaaataaacaatcaatataa	CRISPR spacer
catgggcgagaaattaatcaatcaatataa	Protospacer
..  .. ****** *** ************

52. spacer 1.6|9871|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to NZ_CP046008 (Escherichia coli strain 1919D62 plasmid p1919D62-2, complete sequence) position: , mismatch: 9, identity: 0.7

tgataaagagaaaataaacaatcaatataa	CRISPR spacer
catgggcgagaaattaatcaatcaatataa	Protospacer
..  .. ****** *** ************

53. spacer 1.6|9871|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to NZ_CP051133 (Enterobacter hormaechei strain AMS-38 plasmid pAMS-38a, complete sequence) position: , mismatch: 9, identity: 0.7

tgataaagagaaaataaacaatcaatataa	CRISPR spacer
catggtcgagaaaataatcaatcaaaataa	Protospacer
..  .  ********** ******* ****

54. spacer 1.6|9871|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to MF417868 (Uncultured Caudovirales phage clone 7AX_1, partial genome) position: , mismatch: 9, identity: 0.7

tgataaagagaaaataaacaatcaatataa	CRISPR spacer
aacagaagagaaaataaataatcaatgttt	Protospacer
 .  .*************.*******.*  

55. spacer 1.6|9871|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to NZ_CP010244 (Escherichia coli strain S56 plasmid B, complete sequence) position: , mismatch: 9, identity: 0.7

tgataaagagaaaataaacaatcaatataa	CRISPR spacer
catgggcgagaaattaatcaatcaatataa	Protospacer
..  .. ****** *** ************

56. spacer 1.6|9871|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to NZ_CP042573 (Enterobacter hormaechei strain E5 plasmid pE5_002, complete sequence) position: , mismatch: 9, identity: 0.7

tgataaagagaaaataaacaatcaatataa	CRISPR spacer
catggtcgagaaaataatcaatcaaaataa	Protospacer
..  .  ********** ******* ****

57. spacer 1.6|9871|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to NZ_CP033252 (Escherichia coli strain ECCHD184 plasmid pTB212, complete sequence) position: , mismatch: 9, identity: 0.7

tgataaagagaaaataaacaatcaatataa	CRISPR spacer
catgggcgagaaattaatcaatcaatataa	Protospacer
..  .. ****** *** ************

58. spacer 1.13|10410|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to NZ_CP021916 (Sagittula sp. P11 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.7

aacagaacgcaggcagcaccacaacaagca	CRISPR spacer
cgagcttcgcaggcagcacaacatcaagca	Protospacer
 . .   ************ *** ******

59. spacer 1.13|10410|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to NZ_CP021915 (Sagittula sp. P11 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.7

aacagaacgcaggcagcaccacaacaagca	CRISPR spacer
cgagcttcgcaggcagcacaacatcaagca	Protospacer
 . .   ************ *** ******

60. spacer 1.15|10564|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to MN693705 (Marine virus AFVG_250M220, complete genome) position: , mismatch: 9, identity: 0.7

tggatagtatgtatattctctttctcggca	CRISPR spacer
aggatagtatatatatcctctttcctttag	Protospacer
 *********.*****.*******..   .

61. spacer 1.18|10795|29|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to MN694361 (Marine virus AFVG_250M609, complete genome) position: , mismatch: 9, identity: 0.69

taccttgagatattcatagatacgtccac	CRISPR spacer
ctgtcagagatattcatggatacgtccgt	Protospacer
.  .. ***********.*********..

62. spacer 1.22|11102|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to KC206276 (Escherichia phage EC1-UPM, complete genome) position: , mismatch: 9, identity: 0.7

gaaagtagctgaagcacggttagcagaagt	CRISPR spacer
actgcgtgctgaaccacggttagcagaact	Protospacer
.  .   ****** ************** *

63. spacer 1.23|11179|30|NZ_CP054010|CRISPRCasFinder,PILER-CR matches to AP014358 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S39-C94, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.7

tagggcaattaagaaagcaactcttaataa	CRISPR spacer
actcctaattaagatatcaactcttaatac	Protospacer
     .******** * ************ 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 132117 : 139733 6 Prochlorococcus_phage(33.33%) NA NA
DBSCAN-SWA_2 777633 : 840054 41 uncultured_virus(33.33%) protease,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP054011
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP054011_1 749480-749567 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP054011_2 1056556-1056652 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP054011_3 1184022-1184117 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP054011_4 1352761-1352849 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP054011_5 1390386-1390481 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP054011_6 1592377-1592494 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP054011_7 1843329-1843428 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP054011_8 1915220-1915319 Orphan NA
1 spacers
WYL

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 371322 : 417444 34 Acanthamoeba_polyphaga_lentillevirus(33.33%) tRNA,transposase NA
DBSCAN-SWA_2 514250 : 572912 38 Flavobacterium_phage(50.0%) transposase NA
DBSCAN-SWA_3 894240 : 901584 8 Paramecium_bursaria_Chlorella_virus(33.33%) NA NA
DBSCAN-SWA_4 1556805 : 1618228 44 unidentified_phage(33.33%) tRNA,integrase,transposase attL 1563089:1563103|attR 1603635:1603649
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Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
NZ_CP054011.1|WP_004360068.1|948908_949325_+|PcfK-like-family-protein 948908_949325_+ 138 aa aa 40 NA NA No NA