CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP054012	Parabacteroides distasonis strain FDAARGOS_759 chromosome, complete genome	4 crisprs	PrimPol,DEDDh,RT,cas3,cas5,cas8c,cas7,cas4,cas1,cas2,cas9,PD-DExK	0	10	1	0

1. NZ_CP054012

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP054012_1

• CRISPR_ID: NZ_CP054012_1
• CRISPR_location: 1121196-1121306
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP054012_1

Consensus_repeat	Method
ATTTAAAAGTTTAAATCGGGCTTGCGT	CRISPRCasFinder

spacers of NZ_CP054012_1

>1.1|1121223|57|NZ_CP054012|CRISPRCasFinder
CGGGTGCGAGATGGAATTTAAAAGTTTAAATCAGGCTTGCGTTAGGTGCGAGATGGA

CRISPR arrays and Neighbor proteins around NZ_CP054012_1

CRISPR arrays

The CRISPR arrays of NZ_CP054012_1

>merge|NZ_CP054012|1|1121196-1121306|CRISPRCasFinder
ATTTAAAAGTTTAAATCGGGCTTGCGTCGGGTGCGAGATGGAATTTAAAAGTTTAAATCAGGCTTGCGTTAGGTGCGAGATGGAATTTAAAAGTTTAAATCGGGCTTGCGT

>NZ_CP054012|1|1|1121196-1121306|CRISPRCasFinder
ATTTAAAAGTTTAAATCGGGCTTGCGT	CGGGTGCGAGATGGAATTTAAAAGTTTAAATCAGGCTTGCGTTAGGTGCGAGATGGA
ATTTAAAAGTTTAAATCGGGCTTGCGT

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054012.1|WP_172884469.1|1112292_1114407_+|KamA-family-protein	unknown	unknown	gnl|CDD|272980
NZ_CP054012.1|WP_128577169.1|1122068_1123400_-|C10-family-peptidase	unknown	unknown	gnl|CDD|366737
NZ_CP054012.1|WP_005857766.1|1130235_1130919_+|PorT-family-protein	unknown	unknown	gnl|CDD|372635
NZ_CP054012.1|WP_036631465.1|1115027_1115996_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP054012.1|WP_122268099.1|1131612_1133988_-|response-regulator	unknown	unknown	gnl|CDD|236848
NZ_CP054012.1|WP_011966086.1|1109770_1111642_+|TonB-dependent-receptor	unknown	unknown	gnl|CDD|238657
NZ_CP054012.1|WP_036631467.1|1120258_1121068_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP054012.1|WP_122369230.1|1123682_1125584_-|AMP-binding-protein	unknown	unknown	gnl|CDD|223953
NZ_CP054012.1|WP_036631469.1|1121372_1122047_-|hypothetical-protein	unknown	unknown	unknown
NZ_CP054012.1|WP_122246965.1|1116147_1117443_-|Na+/H+-antiporter-NhaC-family-protein	unknown	unknown	gnl|CDD|224671
NZ_CP054012.1|WP_005857797.1|1109276_1109678_+|nickel-responsive-transcriptional-regulator-NikR	unknown	unknown	gnl|CDD|179855
NZ_CP054012.1|WP_005857793.1|1111773_1112169_+|response-regulator	unknown	unknown	gnl|CDD|381099
NZ_CP054012.1|WP_009275012.1|1107591_1109187_+|SusD/RagB-family-nutrient-binding-outer-membrane-lipoprotein	unknown	unknown	gnl|CDD|372283
NZ_CP054012.1|WP_122380016.1|1134229_1135027_+|IclR-family-transcriptional-regulator	unknown	unknown	gnl|CDD|224332
NZ_CP054012.1|WP_005857781.1|1117497_1120086_-|carboxypeptidase-like-regulatory-domain-containing-protein	unknown	unknown	gnl|CDD|372685
NZ_CP054012.1|WP_128577238.1|1125611_1128974_-|transcription-repair-coupling-factor	unknown	unknown	gnl|CDD|224118
NZ_CP054012.1|WP_172884470.1|1129611_1130100_+|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl|CDD|223854
NZ_CP054012.1|WP_005857763.1|1131073_1131562_+|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl|CDD|223854
NZ_CP054012.1|WP_128577171.1|1114478_1115021_+|ferredoxin	unknown	unknown	gnl|CDD|227082
NZ_CP054012.1|WP_122380015.1|1135044_1136820_+|YVTN-family-beta-propeller-repeat-containing-protein	unknown	unknown	gnl|CDD|225926

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP054012.1|WP_172884469.1|1112292_1114407_+|KamA-family-protein	gnl|CDD|272980	TIGR00238, L-lysine_23-aminomutase, KamA family protein. This model represents essentially the whole of E. coli YjeK and of some of its apparent orthologs. YodO in Bacillus subtilis, a family member which is longer protein by an additional 100 residues, is characterized as a lysine 2,3-aminomutase with iron, sulphide and pyridoxal 5'-phosphate groups. The homolog MJ0634 from M. jannaschii is preceded by nearly 200 C-terminal residues. This family shows similarity to molybdenum cofactor biosynthesis protein MoaA and related proteins. Note that the E. coli homolog was expressed in E. coli and purified and found not to display display lysine 2,3-aminomutase activity. Active site residues are found in 100 residue extension in B. subtilis. Name changed to KamA family protein. [Cellular processes, Adaptations to atypical conditions].	8.8454e-38
NZ_CP054012.1|WP_005857766.1|1130235_1130919_+|PorT-family-protein	gnl|CDD|372635	pfam13568, OMP_b-brl_2, Outer membrane protein beta-barrel domain. This domain is found in a wide range of outer membrane proteins. This domain assumes a membrane bound beta-barrel fold.	4.33636e-06
NZ_CP054012.1|WP_011966086.1|1109770_1111642_+|TonB-dependent-receptor	gnl|CDD|238657	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel. Ligands apparently bind to the large extracellular loops. The N-terminal 150-200 residues form a plug from the periplasmic end of barrel. Energy (proton-motive force) and TonB-dependent conformational alteration of channel (parts of plug, and loops 7 and 8) allow passage of ligand. FepA residues 12-18 form the TonB box, which mediates the interaction with the TonB-containing inner membrane complex. TonB preferentially interacts with ligand-bound receptors. Transport thru the channel may resemble passage thru an air lock. In this model, ligand binding leads to closure of the extracellular end of pore, then a TonB-mediated signal facillitates opening of the interior side of pore, deforming the N-terminal plug and allowing passage of the ligand to the periplasm. Such a mechanism would prevent the free diffusion of small molecules thru the pore.	7.78959e-64
NZ_CP054012.1|WP_122268099.1|1131612_1133988_-|response-regulator	gnl|CDD|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	7.01227e-64
NZ_CP054012.1|WP_122369230.1|1123682_1125584_-|AMP-binding-protein	gnl|CDD|223953	COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism].	8.95713e-125
NZ_CP054012.1|WP_128577238.1|1125611_1128974_-|transcription-repair-coupling-factor	gnl|CDD|224118	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription].	0
NZ_CP054012.1|WP_122246965.1|1116147_1117443_-|Na+/H+-antiporter-NhaC-family-protein	gnl|CDD|224671	COG1757, NhaC, Na+/H+ antiporter [Energy production and conversion].	6.05475e-71
NZ_CP054012.1|WP_005857797.1|1109276_1109678_+|nickel-responsive-transcriptional-regulator-NikR	gnl|CDD|179855	PRK04460, PRK04460, nickel-responsive transcriptional regulator NikR.	5.25947e-35
NZ_CP054012.1|WP_128577169.1|1122068_1123400_-|C10-family-peptidase	gnl|CDD|366737	pfam01640, Peptidase_C10, Peptidase C10 family. This family represents just the active peptide part of these proteins. Residues 1-120 are not part of the model as they form the pro-peptide, which before cleavage blocks the active site from the substrate. The catalytic residues of histidine and cysteine are brought close together at the active site by the folding of the active peptide.	6.17498e-17
NZ_CP054012.1|WP_009275012.1|1107591_1109187_+|SusD/RagB-family-nutrient-binding-outer-membrane-lipoprotein	gnl|CDD|372283	pfam12741, SusD-like, Susd and RagB outer membrane lipoprotein. This is a family of SusD-like proteins, one member of which, BT1043, is an outer membrane lipoprotein involved in host glycan metabolism. The structures of this and SusD-homologs in the family are dominated by tetratrico peptide repeats that may facilitate association with outer membrane beta-barrel transporters required for glycan uptake. The structure of BT1043 complexed with N-acetyllactosamine reveals that recognition is mediated via hydrogen bonding interactions with the reducing end of beta-N-acetylglucosamine, suggesting a role in binding glycans liberated from the mucin polypeptide. Mammalian distal gut bacteria have an expanded capacity to utilize glycans. In the absence of dietary sources, some species rely on host-derived mucosal glycans. The ability of Bacteroides thetaiotaomicron, a prominent human gut symbiont, to forage host glycans contributes to both its ability to persist within an individual host and its ability to be transmitted naturally to new hosts at birth.	0
NZ_CP054012.1|WP_122380016.1|1134229_1135027_+|IclR-family-transcriptional-regulator	gnl|CDD|224332	COG1414, IclR, Transcriptional regulator [Transcription].	3.45905e-76
NZ_CP054012.1|WP_005857793.1|1111773_1112169_+|response-regulator	gnl|CDD|381099	cd17546, REC_hyHK_CKI1_RcsC-like, phosphoacceptor receiver (REC) domain of hybrid sensor histidine kinases/response regulators similar to Arabidopsis thaliana CKI1 and Escherichia coli RcsC. This family is composed of hybrid sensor histidine kinases/response regulators that are sensor histidine kinases (HKs) fused with a REC domain, similar to the sensor histidine kinase CKI1 from Arabidopsis thaliana, which is involved in multi-step phosphorelay (MSP) signaling that mediates responses to a variety of important stimuli in plants. MSP involves a signal being transferred from HKs via histidine phosphotransfer proteins (AHP1-AHP5) to nuclear response regulators. The CKI1 REC domain specifically interacts with the downstream signaling protein AHP2, AHP3 and AHP5. The plant MSP system has evolved from the prokaryotic two-component system (TCS), which allows organisms to sense and respond to changes in environmental conditions. This family also includes bacterial hybrid sensor HKs such as Escherichia coli RcsC, which is a component of the Rcs signalling pathway that controls a variety of physiological functions like capsule synthesis, cell division, and motility. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	6.42425e-34
NZ_CP054012.1|WP_005857781.1|1117497_1120086_-|carboxypeptidase-like-regulatory-domain-containing-protein	gnl|CDD|372685	pfam13715, CarbopepD_reg_2, CarboxypepD_reg-like domain. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 90 amino acids in length. The family is found in association with pfam07715 and pfam00593.	9.48558e-16
NZ_CP054012.1|WP_172884470.1|1129611_1130100_+|DNA-starvation/stationary-phase-protection-protein	gnl|CDD|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	7.41392e-55
NZ_CP054012.1|WP_005857763.1|1131073_1131562_+|DNA-starvation/stationary-phase-protection-protein	gnl|CDD|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	5.42347e-54
NZ_CP054012.1|WP_128577171.1|1114478_1115021_+|ferredoxin	gnl|CDD|227082	COG4739, COG4739, Uncharacterized protein containing a ferredoxin domain [Function unknown].	4.9294e-51
NZ_CP054012.1|WP_122380015.1|1135044_1136820_+|YVTN-family-beta-propeller-repeat-containing-protein	gnl|CDD|225926	COG3391, COG3391, Uncharacterized conserved protein [Function unknown].	2.11219e-11

Protein sequences

>NZ_CP054012.1|WP_036631467.1|1120258_1121068_-|hypothetical-protein
MAKITKVKSAYLERLNNAEYRTFMARYGNLLAGGGGDSESPDEISFDPNDPLGIPQEVRTAFAADFALLTDAVNQSSASEETAQMSTLDKERDDLLIFITSTITQMTKSPLAAQRTAAEKLYLPVKPYIGAARLANLQETAAIEGLLVDLDKDGMPEALAALTLTEVVASLKEKNQQYAALTEQRTNAQADNPVESAKKIRLRMDEEYDEMTTYAFAQSVVKPTATTATFINRLNTLIDETNALYNQRIAQARAAAAKKQADSESPSEI
>NZ_CP054012.1|WP_005857781.1|1117497_1120086_-|carboxypeptidase-like-regulatory-domain-containing-protein
MIRSIRYITLLVLLQFVTGISVLYAQSITSASGIVRDSVSGEPLSYVSVMFENSTIGAMTDDDGAFSLQNDKGLTRLVVSSLGYDNKVVNLKAGQKNDNLDILLSPTSFQIAEVEVRPTKERYSRKDNPAVELIKKVIEHKNDNRIEAKDEYQSEVYEKLSMSLDDFNPNLEKNKFLKKFKFIKNYLDTSEFNGKPILTISVRETISDQYYRKHPKAEKTITKAKRQQGIDKTLDDGGAITANLEEIFKGVNIFDNNINILLNRFVSPLSSTLAVSYYKYYIMDTVDVAGDKCVDLAFVPVNSQSYGFTGRLYITLDGNYAVKKFLLNTPANINLNWVDKLRIEQEFKRMPDSTWVLANENTYVNFYIVKGAQQLYAHQLRNFDKYQFDVQNADSIFGLLGPIHELPEATAQTDTFWIHNRHVPLKEKESALDDLLAQLRKVPAFNVIIKTAEILITGYIPTTADKDKSKFDFGPMNTTFSANHLEGFRMRVGGMTTANLNPHWFGSGYLAYGVNDRKLKYNAKLTYSVNKKKYHEGESPVNNISAIQEYDVYTPGQDFLFTSKDNMFVAWKVGEPVTMMQYIRKTMLQYQKEWLNGLTLTTWARNENNEAAGTLRYDRYNADGTLTNLKSFTNTELGAQLRFAPGERAYNGREGKNSLFNLSKDAPVFKLSHQMGLKNVLGGDFNYNHTEISAEKRIWLSSFGHIDALVTAGKVWDKVPFPLLIMPNTNQSITIQPQAFNMMRALEFVSDQYVSFYFTYYMKGWILNRIPGVKWLRLREVISFSGFYGGLTDKNNPALDPTGLYRFPEGTSPMGRTPYLEASVGLENIFKILRIDYYRRLTYLDQPNIKKGGVRIALRFSF
>NZ_CP054012.1|WP_122246965.1|1116147_1117443_-|Na+/H+-antiporter-NhaC-family-protein
MGELERRPNAWALTPLVVFLLTYLVISIVAGDFYKMPITVAFVISSIVAIAISKGGKLSNRIEQFCRGAANSNIMLMVLIFILAGAFAQTAKAMGAVDATVNLAMSILPGNLLAAGIFLAACFISISVGTSVGTIVALAPVAVGIADKTGMPDALMLGVVVSGAMFGDNLSFISDTTIVATRTQGCQMSDKFKVNIRIALPIAILTGLIYVLVGSGVENAYAPAPIEWVKVIPYLVVLVTAVCGINVMLVLFIGIVLSGIVGLWTGSFDIWGWNASMGLGITNMGELIIVTLLAGGMLEMIRYNGGIDWIIRKLTSRIHSSKGAEMSIAALVSFANLCTANNTIALIMAGPIAKDIADRFKIDPRRSASLLDIFSCFVQGIIPYGAQMLMAAGLGHVSPIEIMQYLYYPYLLGAGALLAILFNYPRKYTLV
>NZ_CP054012.1|WP_036631465.1|1115027_1115996_+|hypothetical-protein
MSDSILKFANKLEIRYSFNNKSNYMDAMTKHRCEKEILTLIRSLADMLDVKLTVYNEPYDKEGGFREKLGVAGESSRSISIVLNLVMQILTRPSLSVGGQPLMDRTPADEEEMQRELSKLRRELRLKTPGATPSHRLIDLLNASPRFCKCKSNFYEALKGYPKVTKISVRELNEKDRNRSGSLEVKRDQFDYFILRSDDLPTVKDNKATIEIISPVLKDSKYRWKGIYNKGGETIDFYMQDEDFKKQMFEDKISFTSGMCIDCVLEIARRLSELGEVVNVSYTVTTVIRTRFDKMEIVTPQGKRHLRKLEAAKKQLTLDLFG
>NZ_CP054012.1|WP_128577171.1|1114478_1115021_+|ferredoxin
MIQNEREIRHELVLQAVRRMMTAARTAPKGKGIDIIEIAMVTDGDILRLSDEMIRIAAETGFKFLLRDAENIKSADAVVIIGTSQKVQGLNCAHCGFDTCVEKPDLVPCAINSVDLGIAIGSACATAADLRVDTRVMFSAGLAAQRLGLLGDCKCVMAIPVSASSKNPFFDRKPKEEPKN
>NZ_CP054012.1|WP_172884469.1|1112292_1114407_+|KamA-family-protein
MIKKEHLVSDISKLKKVYNQSFPWLVTLAEESENAKYFKDALRSLILSRLTEKESTQENVGMAVARRILLLIEHDDTFVDELSTGERLPVRTVTYLWQFLTGHLENEVSPDLFIDLYHQFDLLEHPVEILPDRALVKRQMNRWPTGLDPEVIAIRERNKERIIACLIKKIERRHSPSSRFQFAEGISYEEKEARVREWWNTARFHLSMAIKSPTELNFFLGYSLSDETMSLLARAKKKGMPFFVTPYYLSLLNIEHEGYDDATVRSYIMYSNELVDTYGSIKAWEKEDMVVADEPNAAGWLLPEGHNIHRRYPEVAILIPDSMGRACGGLCASCQRMYDFQSERLNFDFEALKPKESWDRKLRRLMRYFEEDAQLRDILITGGDALMSQNATLRKILEAVYKMAVRKRKANESRPEGEKYAELQRVRLGSRLLAYLPLRVTDELVGILREFKEKASAIGVSQFYIQTHFQSPLEVTPEARHAIEAILAAGWTITNQLVYTVSASRKGHTAKLRQTLNALGVVCYYTFSVKGFRENYAVYTPNSRSLQEAREEKIFGQVPEEKQAELYDMIRNQRPLGKRLVRFLKENGLLFAGTDRNVLNLPAIGKSMTFHTIGLTSEGKRILKFDHDGSRRHSPIIDQMGEVYIVENKSVAAYLRQLKEMGEEVSEYRTIWNYCEGETEPRFSIYEYPAYPFKATDRMTNLEL
>NZ_CP054012.1|WP_005857793.1|1111773_1112169_+|response-regulator
MDVKNDLGGGKPTLLIAEDEESNYLLLKTILHKYCNLIRAKTGLEALALFKENEVDLILMDIKMPEMTGIESLKEIRKLSKDIPVIMQSAYVFDSDMEAAKEAGASGFITKPINLKVLKNTISQYCSSIVW
>NZ_CP054012.1|WP_011966086.1|1109770_1111642_+|TonB-dependent-receptor
MRKELLLVSGLLVSSMAFAIDPVEIDSLINLKGVVVSANKIHVNRNSVPLSISVIEREEIEASSESALLPVLSERVPGLFVTEKGITGFGVSEGAAGTVNIRGVGQGNKVLMLFDGQPQWAGLFGHSLPDTYVASDVEKVEVIRGPGSLLYGSNAMGGVVNIITRQHNQPGRRTQARIMYGSYNTQKYMINNGYNIGNFSSYISLNHDRTDGHRPDSKFHITNGFAKLGYKIDDHYKVTGDVSLAKFKNQNPGEITNPLIDNIMNILRGTTSFALENNYGKTSGALRAFYNWGHHKIDDGYNPGGTPNPYLFYSDDHNAGFLLYQSFRLVKGNSFTVGIDYKNWGGHAWQDSINGNQNELVNKTVNEVAGYVIMQQDLFDKVSLNAGVRYEHNSIFGGEWIPQAGFTVRPFEGNVIKASLSKGFRSPNIREMYMFPPQNPDLKPERMMNYEVSIGQTFLDGNLFTELTAFFIDGQDMIETTRIDGRPKNVNTGTFTNKGIEFDSRYQILKNLSLDMNYSYLHTSKALLAAPAHKFFAGVMYAPGRFTFNVNVQSIFDLYINTADKVKEDYTVLNAKAAYRFGTRDKGLNLFVKGENLTATRYSINEGFPMPKAIFMGGIDVTF
>NZ_CP054012.1|WP_005857797.1|1109276_1109678_+|nickel-responsive-transcriptional-regulator-NikR
MSLKRFGVSLEDNLLESLDQYVNENGFANRSQAIRFLIEKNVAERKWQCNHIVAGTIVIMYDQVKKEISLKITGIQQNYKDVILSSSQYYINQNFCLHIVTVMGTAHRLTELSDKLTTIKGIKHGKLVMSRAD
>NZ_CP054012.1|WP_009275012.1|1107591_1109187_+|SusD/RagB-family-nutrient-binding-outer-membrane-lipoprotein
MKTRFLNEMASLLVVLLLFSCTGKFEEYNTDSTGFTDEQKTYDYNTFGVWLKVVQMGIYFNYDWGNGKNWHFQTMQNLNADMFSGYMHDFKPFNAGLGNTVYNLQDGWNGTMWDNTYGYIMTEIKQTEDHSRDKYPAFYAIAKILKVEVMHRISDYYGPIVYTKFGESDAGVMPDSQKDAYYAFFRDLGEAIHLLSEYDGEETFSRFDMIMPENYRTFGEWMRFANSLRLRLAVRIAMADPDKARDEAHKSLTHPAGLLEEAYEVVAVSTAGTGYSNPLGEINKAWGEVFMNANMESILKGYKDPRLSCYFEPATGQGYSGEYRGIRQGTGFNHSRYSEHSRSTITQKTDAILMTPAEVWFLRAEAALRGWSGEDAGTCYEQGVRSSFNQWRVGEANTYLRSDLVAADFVDTFTPEYSAKALCLVSPAWDEEASRETKLEKIITQKWIACYPEGCEAWAEQRRTGYPRLFPVLVNKSNGKIDTRTMIRRLNFPVSIISGNPAQYSALCEYLGGPDTGGTRLWWDTGVNFRD
>NZ_CP054012.1|WP_036631469.1|1121372_1122047_-|hypothetical-protein
MRSIFFLCCVALAGLCACESEPQEGQISCVEDIVIQIVLTDPELNDRLNPGSPSFLGEEYTQGIEVMYRYKDQKLTLPQLWPLQTNGGAILGEWSTIYPPYMEDNGYGKTDGNTKGYYYIEASPFVTEGNRDIAYTYIQYPDGNEDEIKVQLYRTPSLLLMDQIWINGELVYSMHPKEGSLSTKQYYNPEYYPFLVPTLDDNGKQIGDLVQPENGTRIIVIKKK
>NZ_CP054012.1|WP_128577169.1|1122068_1123400_-|C10-family-peptidase
MKATDTLLSTIIIGVTLIIMTGCSQSEDLIDAGAQALNAATNNDKELVLTASEQIALSVKQKGSYDISEKEAKKNFESYAKTIHKEKAVKVKALSLKKNKKNGRNLYYEVIFENDKGTGFSLLSADERVDKLLCYSENGSISDTSFNKSLKYCLELVELYVEEQTQKELDIESLASSANQKIKAANKGKVITKALPPFDPDDPNSPWSYDRTDVKNEVTERIKLVPGGWHQESPFNDLLPLLPPDYTDRAYVGCGMIAVSQIMAYHKKPYSNYITAAMWPTMIDNRYTSVELKRLMLDLFNTMNTGYDGHGTSSTISKARDFLNNNGYTAGSAQDYTFDRAWSALSYGPTYVMGIKADDEGHAWVIDGVRITKTTSTDIYTITYNGKVFEASGNSSITSFRTVRYDWGGRTLSDNGWFTSGIFEKPSTGSNYNRNNKIISYIY
>NZ_CP054012.1|WP_122369230.1|1123682_1125584_-|AMP-binding-protein
MEKKTIIDLFESSAKRFPSNPFLWEKTGKRFEPTTYSEVRDLVYEEGAGLISLGVRKGDNMALLSEGRNAWIIGELAMFYAGATNVPLSIKLEEANDLLFRLVHADVKYIMVSGQQLKKIRAIKDKLPAVRKIIVLDEQAEYQDREMSLSEIRRMGKVYLGIHPLEEFLAIGQSLGNDDYATITYTSGTTADPKGVILTHRNYTANVEQALTCVDIDDTWRTLVILPLDHCFAHVVGFYIFMSKGASVATVQVGRTGMETLKNIPINIKEFKPYLILSVPALAKNFKKNIEQGIRARGKNAARLFNLALRIGYIYNGDSDEEEGKGFRVLLKPLVRLFDKLLFAKVRENFGGELKFFIGGGALLDKDLQKFYYALGIPMYQGYGLSEATPIISTNGPRRHTFGSSGVLVRPLDLKICDMDGNVLPPGEKGEIVIRGENVMAGYWKNPASTADTVKEGWLYTGDMGYMRDGLLYVLGRFKSLLIGSDGEKYSPEGIEEALVEHSSCIDQLILYNNQSPYTTALLVPNKERLRKHLAHQNLDLTSDQGREEAIRIIQRQIDRFRKGGDLSSMFPDRWLPTTFAILPEPFTEQNGMVNSTMKIVRGKVEKAYAARIAQLYTPEGKNPQNKWNKEAL
>NZ_CP054012.1|WP_128577238.1|1125611_1128974_-|transcription-repair-coupling-factor
MEVQELLKLYAAHPQVTALDTLLKNDTSRNIFLKGLNGSGPAMTIASLFTKGRGSYVCVLNDQEEAGYFYHDLMQLTASNEVYFFPSAYRRAIKYGHVDPANEILRTEVLSRLQDPDASFVIVTYPDALAERVVAREVLKENTLKISVGEKLDNMFVSDVLDEYGFEQVDYVYEPGQYALRGSILDVFSFSNEFPYRIDFFGDEVETIRTFDVETQLSKEKLDSIYIVPEMSKNAKDSTSLLGSLPRNTCIAARDLAWCKERIGSVWNDDPVVADEESFADIDQMRKKLVRGEDFLREVLDFRRIHFGARPMGTADATIHFSTQTQPIYHKNFDRVSESFHKYLDEGYTLYILSDQEKQANRIRMIFEDRGDNIPFTAVNRTIHEGFADDTLRICFFTDHQLFDRFHKFNLKSDKARSGKITLSLKELNQFSQGDYIVHIDHGVGQFGGLVRTEVNGKMQEAIKLIYQNNDIIFVSIHSLHKLSKYKGKESGEPPKLSKLGTGAWEKMKERTKAKVKDIARDLILLYSKRKQETGFAYTPDSFMQHELEASFIYEDTPDQMKATAEVKADMESTRPMDRLICGDVGFGKTEVAIRAAFKAVSDNKQVAVLVPTTVLAFQHYQTFCERLKDFPCKIDYISRARTAAQIKATLKELKEGEVNILIGTHRIVGKDVRFKDLGLLIIDEEQKFGVSVKEKLRQLKVNVDTLTMTATPIPRTLQFSLMGARDLSSITTPPPNRYPVQTEVERFNPDIIREAINFEMSRNGQVFFINNRIQNIYEMEALVRREVPDARVAVGHGQMEPEKLEKIILDFVNYEYDVLIATSIVESGIDVPNANTIIINNAQQFGLSDLHQLRGRVGRSNRKAFCYLLSPPLTSLTQEARRRLQAIENFSELGSGIHIAMQDLDIRGAGNMLGAEQSGFIADLGYETYQKILEEAVDELKSEEFADLYADNAEGHRDTGSEYVRETYIESDLELMFPPTYIPNDSERISLYRELDNMEEERDILAFTERLKDRFGKIPKEGKELIRIVRLRRMAKKLGMEKVILKKGQMSLFLVNNPDSPYYQSEAFGKLLGFIQKHPRECNLREQNGKRSIVIKNVPTVEAACGYLQEMEKINSTNF
>NZ_CP054012.1|WP_172884470.1|1129611_1130100_+|DNA-starvation/stationary-phase-protection-protein
MRTLDYIHLDASAVSNVVASLKQLLADYQVFYTNLRGFHWNIKGHGFFVLHGKFEDMYNNAAEKVDELAERILMLGGEPENKFSEYLKVARVKEVSGVSCGDEALKNILDTYGHLIDEERKLLSLASGAGDEATVALMSDYLKEQEKLVWMLVAYLTCDCKK
>NZ_CP054012.1|WP_005857766.1|1130235_1130919_+|PorT-family-protein
MKRVVVFAMVLMLGVVSVQAQWSVVPEAGMTVMKAGPMVDWKPSWKIGVGVEYQLKPEFLSLKSGLYYTQRGYSNDQFPGYGYGHYWWTVPGPTYDPYGYAYDYSNKVTRNFLQLPIMANLSFKLAEDIRLNVGVGPYIAVSVLDKGMFGGWSVASEESAKFYTHDPCEGLRAFDWGISSTVGVEIKQCFINFGYDVSLGKEYKGGSIEANYHTLALTAGYKFKLGK
>NZ_CP054012.1|WP_005857763.1|1131073_1131562_+|DNA-starvation/stationary-phase-protection-protein
MKTLDYLHLDASAVSNVVASLKQLLADYQVFYTNLRGFHWNIKGHGFFVLHGKFEDMYNNAAEKVDELAERILMLGGEPENKFSEYLKVARVKEVSGVSCGDEALKHILDTYGLLIGEERKLLSLASEAGDEATVALMSDYLKEQEKLVWMLVAYSTCDCKK
>NZ_CP054012.1|WP_122268099.1|1131612_1133988_-|response-regulator
MTSESKKEKLNKNELLANYQYLMDTIWTIYLEDGSVDILKYSMNPELVNTKQDYTSLANILRNDIYSPDRSLWDETVSLEAFFRMIAEGCFHKTFDLRFCNDHFGFEWHETFIDILVNNEGIPDRILLSSRNINDFRKAQIIETAVRSEYDYVIYIEASKNSYVMYTSGSESYSPPPIASYDYDGVVASYNRQYMAPELHEEMTEKLQIAHIEPILRKHGEYIVYGTMIENGVNREKKMRFSYYDREKNIWLMTRTDITEIKEERKQKKLLQEALQSANAANRAKTDFLSRMSHDIRTPINAIVGMTAIAGLHMDDQMRIADCLKKITISSKLLLNLINEVLDMSKLESDKIMLTEEAFKINELLESLFVMVQPAFEAKKQKFQIHVTKIKHECLIGDVQRIQQALLNMLTNAIKYTPEDGQIQLTVEEKPSVYNGYGQFEITVTDNGIGMKPEFLEKVFEPFERSDDKAIRNIQGTGLGMAISRHIAQIMNGDILVESEYGKGSKFTMRFHVKLGSTNEYDNNILVDLPVLVVDDDEVSCEIAYENLQELGMKPEWVLSGEKAVQKVIDGDTYFAIIIDLMMPGMNGIETTIKIREYVEPDTPIIIISAYDYSGYEFEAVKAGVNGFISKPIMKSKLFHLMKKFASDKKEDEQVLITPTHIISFPGKRILVVEDNDLNREIAYELLQETHAEVETACDGQEAVDKVAASPEGYYDFIIMDIQMPVMDGLEATRQIRHLDRQDIKDMPIIAMSANAFAEDVRLSLEAGMNEHIAKPIEIDKLYGIMRKWFQ
>NZ_CP054012.1|WP_122380016.1|1134229_1135027_+|IclR-family-transcriptional-regulator
MENTLPNMEKVDENYKVPNLEKGIAVLEYLSLRSAGETLQDIKSALDISQTTAYRILNTLVRLEYLNFSEDTKRYKLSRKLLTLGFRSLNEHNLLETVLPHLRDLRDQVKETACFGVLGDEKGIFIEQAQGHHTFRFVLSPGKPFELHCSAPGKAIMAYLPKTVRDRYLSYMTFTRYNSRTITSREAYLEELEKVGKQGYAMDNEEELSGVICVGAPIFNYTGYPCGAIWISGPKDRLSKEVVKNTVKVIKEVAGVISNELGFRK
>NZ_CP054012.1|WP_122380015.1|1135044_1136820_+|YVTN-family-beta-propeller-repeat-containing-protein
MNTRKYLIKNSLVACLVGCCVSLASAGNPPFFTTDAVLNAKGELLMTQKGTRHLDIFSADGKSLLHSFPFDEIPTGLLPDGDKVYVTTFEKTGRLQVLSLESGRVESAIPTGSGACHPMFGPDKKHIYVCNQFDNSVVEVDPVMRKVVRSVKVLREPKSAVFSKDGKYMFVTNFLPSQRADVDVVAACVSVIEMDGFTKVKDIQLANGSNALRGMCITPDGKYIYVSHNLGRFTVPTSQLQQGWMNTSAFSVIDVAKQEFVGAVLVDEPDRGAAGIWSIACDDKHIFITHSGTHEVSVIDHPAMLAKFESYKDKSRLDYDLNFLYGLRERVPLQGNGPRNFIFSGDKLIIPTYFADILNIVDINTLEVTATDMNPGRTETPENKGEKYFNDANHCYQGWQSCNGCHPGDARTDGMNWDLMNDGVGNSKNCKSMLYSHVTPPSMISGVRESAEYAVRAGFKFIQFFEPEEEMAKCVDAYMKSLRPVPSPYLVNGELSDKAKEGRKVFEKLKCGECHSGPYYTDMKMHRIGEDIEFEKGWDTPTLIEVWRTAPYLFDGRAATMEEVFEVHKHGIDKKVSKKDVEALTEYVNSL

Crispr_ID: NZ_CP054012_2

• CRISPR_ID: NZ_CP054012_2
• CRISPR_location: 1784024-1784725
• CRISPR_type: TypeI
• Repeat_type: I-C
• Spacer_info: 10 spacers
• Cas_protein_info: cas2,cas1,cas4,cas7,cas8c,cas5,cas3

Consensus repeat of NZ_CP054012_2

Consensus_repeat	Method
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC	PILER-CR
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC	CRISPRCasFinder
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC	CRT

spacers of NZ_CP054012_2

>2.1|1784056|33|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT
TTCCTTTTTTCCACAATAAAAAGCGTATTTATC
>2.2|1784121|35|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT
TTACATCCATCAGGAACGGTGTCACCATAACATAT
>2.3|1784188|37|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT
CCGTTCTTCCGAACTAACCCTGTCGGTGATACCGATG
>2.4|1784257|37|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT
TATCCATTATCTTTAATTTTTGTCGTTAATCCGGCAC
>2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT
AGGATCTCCTCGTTGCCGCCGAAGGTGACGGTAT
>2.6|1784392|35|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT
TAACAAACATAGCCATTTATTTAAAAATAGAACAC
>2.7|1784459|36|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT
CCCGAATATCGTAAAACGTCGGCGTAGCCGCACGTC
>2.8|1784527|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT
TTCGTGGAGATGGTACGTGGGTGGTTCCGACGAA
>2.9|1784593|36|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT
GTTTGGACAGAGATAAATTTTCGTAAGTCAAAGATA
>2.10|1784661|33|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT
TTCACTGGCACCGTTCTCTATCGCATTCCGATA

CRISPR arrays and Neighbor proteins around NZ_CP054012_2

CRISPR arrays

The CRISPR arrays of NZ_CP054012_2

>merge|NZ_CP054012|2|1784024-1784725|PILER-CR,CRISPRCasFinder,CRT
GTCGCACCCCGTGTGGGTGCGTGGATTGAAACTTCCTTTTTTCCACAATAAAAAGCGTATTTATCGTCGCACCCCGTGTGGGTGCGTGGATTGAAACTTACATCCATCAGGAACGGTGTCACCATAACATATGTCGCACCCCGTGTGGGTGCGTGGATTGAAACCCGTTCTTCCGAACTAACCCTGTCGGTGATACCGATGGTCGCACCCCGTGTGGGTGCGTGGATTGAAACTATCCATTATCTTTAATTTTTGTCGTTAATCCGGCACGTCGCACCCCGTGTGGGTGCGTGGATTGAAACAGGATCTCCTCGTTGCCGCCGAAGGTGACGGTATGTCGCACCCCGTGTGGGTGCGTGGATTGAAACTAACAAACATAGCCATTTATTTAAAAATAGAACACGTCGCACCCCGTGTGGGTGCGTGGATTGAAACCCCGAATATCGTAAAACGTCGGCGTAGCCGCACGTCGTCGCACCCCGTGTGGGTGCGTGGATTGAAACTTCGTGGAGATGGTACGTGGGTGGTTCCGACGAAGTCGCACCCCGTGTGGGTGCGTGGATTGAAACGTTTGGACAGAGATAAATTTTCGTAAGTCAAAGATAGTCGCACCCCGTGTGGGTGCGTGGATTGAAACTTCACTGGCACCGTTCTCTATCGCATTCCGATAGTCGCACCCCGTGTGGGTGCGTGGATTGAAAC

>NZ_CP054012|2|1|1784024-1784725|PILER-CR
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC	TTCCTTTTTTCCACAATAAAAAGCGTATTTATC
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC	TTACATCCATCAGGAACGGTGTCACCATAACATAT
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC	CCGTTCTTCCGAACTAACCCTGTCGGTGATACCGATG
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC	TATCCATTATCTTTAATTTTTGTCGTTAATCCGGCAC
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC	AGGATCTCCTCGTTGCCGCCGAAGGTGACGGTAT
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC	TAACAAACATAGCCATTTATTTAAAAATAGAACAC
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC	CCCGAATATCGTAAAACGTCGGCGTAGCCGCACGTC
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC	TTCGTGGAGATGGTACGTGGGTGGTTCCGACGAA
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC	GTTTGGACAGAGATAAATTTTCGTAAGTCAAAGATA
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC	TTCACTGGCACCGTTCTCTATCGCATTCCGATA
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC

>NZ_CP054012|2|2|1784024-1784725|CRISPRCasFinder
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC	TTCCTTTTTTCCACAATAAAAAGCGTATTTATC
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC	TTACATCCATCAGGAACGGTGTCACCATAACATAT
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC	CCGTTCTTCCGAACTAACCCTGTCGGTGATACCGATG
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC	TATCCATTATCTTTAATTTTTGTCGTTAATCCGGCAC
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC	AGGATCTCCTCGTTGCCGCCGAAGGTGACGGTAT
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC	TAACAAACATAGCCATTTATTTAAAAATAGAACAC
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC	CCCGAATATCGTAAAACGTCGGCGTAGCCGCACGTC
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC	TTCGTGGAGATGGTACGTGGGTGGTTCCGACGAA
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC	GTTTGGACAGAGATAAATTTTCGTAAGTCAAAGATA
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC	TTCACTGGCACCGTTCTCTATCGCATTCCGATA
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC

>NZ_CP054012|2|1|1784024-1784725|CRT
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC	TTCCTTTTTTCCACAATAAAAAGCGTATTTATC
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC	TTACATCCATCAGGAACGGTGTCACCATAACATAT
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC	CCGTTCTTCCGAACTAACCCTGTCGGTGATACCGATG
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC	TATCCATTATCTTTAATTTTTGTCGTTAATCCGGCAC
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC	AGGATCTCCTCGTTGCCGCCGAAGGTGACGGTAT
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC	TAACAAACATAGCCATTTATTTAAAAATAGAACAC
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC	CCCGAATATCGTAAAACGTCGGCGTAGCCGCACGTC
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC	TTCGTGGAGATGGTACGTGGGTGGTTCCGACGAA
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC	GTTTGGACAGAGATAAATTTTCGTAAGTCAAAGATA
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC	TTCACTGGCACCGTTCTCTATCGCATTCCGATA
GTCGCACCCCGTGTGGGTGCGTGGATTGAAAC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054012.1|WP_005862150.1|1791252_1791714_-|DUF4293-domain-containing-protein	unknown	unknown	gnl|CDD|379484
NZ_CP054012.1|WP_005856744.1|1794874_1795684_-|DUF1080-domain-containing-protein	unknown	unknown	gnl|CDD|368908
NZ_CP054012.1|WP_128577059.1|1781866_1782535_+|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl|CDD|366863
NZ_CP054012.1|WP_005856746.1|1793466_1794768_-|phenylacetate--CoA-ligase	unknown	unknown	gnl|CDD|341239
NZ_CP054012.1|WP_128577061.1|1776292_1778437_+|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	gnl|CDD|224124
NZ_CP054012.1|WP_057317111.1|1782531_1783554_+|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl|CDD|188360
NZ_CP054012.1|WP_005856748.1|1793020_1793446_-|hypothetical-protein	unknown	unknown	gnl|CDD|227090
NZ_CP054012.1|WP_009017489.1|1784946_1785423_+|GAF-domain-containing-protein	unknown	unknown	gnl|CDD|224867
NZ_CP054012.1|WP_005856785.1|1770995_1771871_-|carbon-nitrogen-hydrolase	unknown	unknown	gnl|CDD|143597
NZ_CP054012.1|WP_172884498.1|1785574_1788454_-|PD-(D/E)XK-nuclease-family-protein	unknown	unknown	gnl|CDD|378929
NZ_CP054012.1|WP_011966341.1|1772908_1774258_-|MATE-family-efflux-transporter	unknown	unknown	gnl|CDD|240548
NZ_CP054012.1|WP_057318776.1|1792147_1792954_-|outer-membrane-protein-assembly-factor-BamD	unknown	unknown	gnl|CDD|274513
NZ_CP054012.1|WP_008772101.1|1788523_1789516_-|L-glyceraldehyde-3-phosphate-reductase	unknown	unknown	gnl|CDD|381377
NZ_CP054012.1|WP_005856752.1|1791790_1792123_-|DNA-directed-RNA-polymerase-subunit-omega	unknown	unknown	gnl|CDD|376482
NZ_CP054012.1|WP_005856765.1|1783563_1783854_+|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856
NZ_CP054012.1|WP_172884497.1|1778433_1779192_+|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl|CDD|187534
NZ_CP054012.1|WP_005856772.1|1779193_1780870_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl|CDD|378245
NZ_CP054012.1|WP_005856783.1|1771890_1772919_-|agmatine-deiminase-family-protein	unknown	unknown	gnl|CDD|377332
NZ_CP054012.1|WP_005856770.1|1780890_1781856_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl|CDD|377458
NZ_CP054012.1|WP_128577058.1|1789538_1791071_-|sulfatase	unknown	unknown	gnl|CDD|293763

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_CP054012.1|WP_128577061.1|1776292_1778437_+|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	4.7e-69	228.1	5.8
NZ_CP054012.1|WP_005856772.1|1779193_1780870_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	5.8e-77	254.1	1.6
NZ_CP054012.1|WP_172884497.1|1778433_1779192_+|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	2.7e-62	204.9	0.0
NZ_CP054012.1|WP_005856765.1|1783563_1783854_+|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	5.2e-28	91.9	1.4
NZ_CP054012.1|WP_128577059.1|1781866_1782535_+|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	7e-35	115.3	0.3
NZ_CP054012.1|WP_057317111.1|1782531_1783554_+|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	1.9e-134	442.7	0.0
NZ_CP054012.1|WP_005856770.1|1780890_1781856_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	9.2e-95	311.7	2.5

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP054012.1|WP_005862150.1|1791252_1791714_-|DUF4293-domain-containing-protein	gnl|CDD|379484	pfam14126, DUF4293, Domain of unknown function (DUF4293). This family of integral membrane proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 136 and 154 amino acids in length.	2.7277e-45
NZ_CP054012.1|WP_005856744.1|1794874_1795684_-|DUF1080-domain-containing-protein	gnl|CDD|368908	pfam06439, DUF1080, Domain of Unknown Function (DUF1080). This family has structural similarity to an endo-1,3-1,4-beta glucanase belonging to glycoside hydrolase family 16. However, the structure surrounding the active site differs from that of the endo-1,3-1,4-beta glucanase.	7.27192e-54
NZ_CP054012.1|WP_128577059.1|1781866_1782535_+|CRISPR-associated-protein-Cas4	gnl|CDD|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	2.09592e-25
NZ_CP054012.1|WP_005856746.1|1793466_1794768_-|phenylacetate--CoA-ligase	gnl|CDD|341239	cd05913, PaaK, Phenylacetate-CoA ligase (also known as PaaK). PaaK catalyzes the first step in the aromatic degradation pathway, by converting phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Phenylacetate-CoA ligase has been found in proteobacteria as well as gram positive prokaryotes. The enzyme is specifically induced after aerobic growth in a chemically defined medium containing PA or phenylalanine (Phe) as the sole carbon source. PaaKs are members of the adenylate-forming enzyme (AFE) family. However, sequence comparison reveals divergent features of PaaK with respect to the superfamily, including a novel N-terminal sequence.	0
NZ_CP054012.1|WP_128577061.1|1776292_1778437_+|CRISPR-associated-helicase-Cas3'	gnl|CDD|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	1.02356e-57
NZ_CP054012.1|WP_057317111.1|1782531_1783554_+|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl|CDD|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	8.31873e-167
NZ_CP054012.1|WP_005856748.1|1793020_1793446_-|hypothetical-protein	gnl|CDD|227090	COG4747, COG4747, ACT domain-containing protein [General function prediction only].	1.95331e-39
NZ_CP054012.1|WP_009017489.1|1784946_1785423_+|GAF-domain-containing-protein	gnl|CDD|224867	COG1956, COG1956, GAF domain-containing protein [Signal transduction mechanisms].	5.53469e-69
NZ_CP054012.1|WP_005856785.1|1770995_1771871_-|carbon-nitrogen-hydrolase	gnl|CDD|143597	cd07573, CPA, N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.	4.72185e-174
NZ_CP054012.1|WP_172884498.1|1785574_1788454_-|PD-(D/E)XK-nuclease-family-protein	gnl|CDD|378929	pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily. Members of this family belong to the PD-(D/E)XK nuclease superfamily.	7.25926e-40
NZ_CP054012.1|WP_011966341.1|1772908_1774258_-|MATE-family-efflux-transporter	gnl|CDD|240548	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Streptococcus aureus MepA and Vibrio vulnificus VmrA and functions most likely as a multidrug efflux pump.	7.9793e-138
NZ_CP054012.1|WP_057318776.1|1792147_1792954_-|outer-membrane-protein-assembly-factor-BamD	gnl|CDD|274513	TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking].	8.67781e-24
NZ_CP054012.1|WP_008772101.1|1788523_1789516_-|L-glyceraldehyde-3-phosphate-reductase	gnl|CDD|381377	cd19151, AKR_AKR14A2, Salmonella enterica aldo-keto reductase (AKR) and similar protein. Salmonella enterica AKR is a founding member of aldo-keto reductase family 14 member A2 (AKR14A2).	0
NZ_CP054012.1|WP_005856752.1|1791790_1792123_-|DNA-directed-RNA-polymerase-subunit-omega	gnl|CDD|376482	pfam01192, RNA_pol_Rpb6, RNA polymerase Rpb6. Rpb6 is an essential subunit in the eukaryotic polymerases Pol I, II and III. This family also contains the bacterial equivalent to Rpb6, the omega subunit. Rpb6 and omega are structurally conserved and both function in polymerase assembly.	0.000107095
NZ_CP054012.1|WP_005856765.1|1783563_1783854_+|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	3.39924e-28
NZ_CP054012.1|WP_172884497.1|1778433_1779192_+|type-I-C-CRISPR-associated-protein-Cas5	gnl|CDD|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	7.97124e-68
NZ_CP054012.1|WP_005856772.1|1779193_1780870_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl|CDD|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	3.88501e-80
NZ_CP054012.1|WP_005856783.1|1771890_1772919_-|agmatine-deiminase-family-protein	gnl|CDD|377332	pfam04371, PAD_porph, Porphyromonas-type peptidyl-arginine deiminase. Peptidyl-arginine deiminase (PAD) enzymes catalyze the deimination of the guanidino group from carboxy-terminal arginine residues of various peptides to produce ammonia. PAD from Porphyromonas gingivalis (PPAD) appears to be evolutionarily unrelated to mammalian PAD (pfam03068), which is a metalloenzyme. PPAD is thought to belong to the same superfamily as aminotransferase and arginine deiminase, and to form an alpha/beta propeller structure. This family has previously been named PPADH (Porphyromonas peptidyl-arginine deiminase homologs). The predicted catalytic residues in PPAD are Asp130, Asp187, His236, Asp238 and Cys351. These are absolutely conserved with the exception of Asp187 which is absent in two family members. PPAD is also able to catalyze the deimination of free L-arginine, but has primarily peptidyl-arginine specificity. It may have a FMN cofactor.	4.94603e-170
NZ_CP054012.1|WP_005856770.1|1780890_1781856_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl|CDD|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	9.43492e-127
NZ_CP054012.1|WP_128577058.1|1789538_1791071_-|sulfatase	gnl|CDD|293763	cd16144, ARS_like, uncharacterized arylsulfatase subfamily. Sulfatases catalyze the hydrolysis of sulfate esters from wide range of substrates, including steroids, carbohydrates and proteins. Sulfate esters may be formed from various alcohols and amines. The biological roles of sulfatase includes the cycling of sulfur in the environment, in the degradation of sulfated glycosaminoglycans and glycolipids in the lysosome, and in remodeling sulfated glycosaminoglycans in the extracellular space. The sulfatases are essential for human metabolism. At least eight human monogenic diseases are caused by the deficiency of individual sulfatases.	3.8441e-178

Protein sequences

>NZ_CP054012.1|WP_005856765.1|1783563_1783854_+|CRISPR-associated-endonuclease-Cas2
MHILVTYDVDTTSKEGARRLRHVAKACIDYGQRVQNSVFECEVTEAQYCLLIERIKRIIDMSLDSVRFYILNKNENKRVKVIGVETAYKVNNALII
>NZ_CP054012.1|WP_057317111.1|1782531_1783554_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MRKLLNTLYVTTPEAYLSKDGLNVVVSVKQEEVFRIPAINIEGIVTFGYMGASPGVMKLCSDNSISLTFLSPHGRFISRVQSATKGNVLLRKRQYQLSDDESWSLHVARLMIGGKIQNYRNILRRYIRDYGENENINRAVQVLEHAKREALATQDKTTLIGYEGMASNAYFEVLPVLILNQKADFPFHGRNRRPPKDAVNAMLSFAYTLIANDTSAALETVGLDPYVGFLHTLRPGRTSLALDMMEELRAYLGDRFVLSLINKRQITSKDFLFQGDNGVVMTDKGKKTFISAWQARKREVIIHPYLNEKIEIGLLPYVQAMLMARYIRQDIDNYPVFLIK
>NZ_CP054012.1|WP_128577059.1|1781866_1782535_+|CRISPR-associated-protein-Cas4
MQYEEDDMLMLSGIQHFRFCPRQWALIHIEQQWDDNRLTIEGQILHKHVDDPFYRQKCGDQITLRAVNIASRELGLYGISDAIELLPSPSLEDTILHPKYPGRWRPVAVEYKHGRPKKDEVDEVQLAAQTMCLEEMYAIHIPYGVFFYGELRHRIEVAITDELRNIVRQCARDMHEIFSKTVIPKAKYERHCDKCSLKEICMPTIAKNCTTVDTYLNKHLYT
>NZ_CP054012.1|WP_005856770.1|1780890_1781856_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MTTIKNRYDFVFLFDVKDGNPNGDPDFDNMPRTDEETNHGLVTDVCIKRKIRNYVQLLKGLKSPYDIFIREGNVLNTIIDGKRAETDKKEEDEKKAVKLGRDEMCNQYFDIRTFGAVMSTSDMKADDDSSEEKAEEGGKGKKSKKKDSKKKIKGLSVVRGPVQLTFARSIDPVDAKSHSLTRCCVTTKDENKNGHTNTIGNKNTVSYGLYRMHGFISATDAAKTRFSEEDKEILFNAIINAFENDHAAARGEMNPRALIVFKHESPLGNARAGQLFDLIQVNKKEGVEFPRSFGDYKVTSKEEIEAVLKNRFPNVTVKELI
>NZ_CP054012.1|WP_005856772.1|1779193_1780870_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MIAELVELGKRIRKGHDALKEEKCSWYIVINKYGTFLGLTPCDVTIEAEKLPAKKGRARLLLDKPEETLGFKGSKDKYEKYLAKLEDYKEVQELSPIFSFYNKPEEIEKALKAFSNLSPAKQKGNMTFMIDSTLLVSLECVKDAVKKKYEDTLCSKKQENLCAVCGTNTYPILDESHGSVKLPKGQTSGSMLVSYNNNAFESYNLKGNLNSGICTNCARNYIEGLQYLVGNGHEITTEKGEKIFRFSNRQKISDDTIALFWTKEPNEDIDPFSDICQPTEERVRKLFSSIATGEYQRVNTEVENYFYSCTISSAAARIAVRDWMAISVSQYQKNLKQWFDDIETVKDGEISYPGINSILNSCIKKKTKQTQSDAKAKARIGAILWHAALTNTSLPLMILQSVLDQIEHEKTTKFNKTFSVEKSTVIRLVLNRNIKNTYYMNKELDEQNESKAYLCGRLFAFICKLQFKAQGEVNSSIKDRFFASASKTPSRVMGILLTQYVPVYQKKTKGAYSKSITEIAVRIGNFPDKLTLTQRGEFALGYYYQYAVKQNENNNNNN
>NZ_CP054012.1|WP_172884497.1|1778433_1779192_+|type-I-C-CRISPR-associated-protein-Cas5
MIDTNSVKVRVKGEYACFTQPALKVERMTYPCMTPSAARGVLECILWKPEFQWVVKSIKILKPIVFSSFKRNELNYIQSGRPIDISNSGNRAQRNSIVLRDVEYIIEANIYMSEANIQKVKNRDKSEGGKSCEPIVKYRNMFLRRLNKGQCWHQPYLGTREFSCEFFPVTQEDEDRANELNLTYPIGSMLFDIWYDRDHNTKPIYMQEAVVQNSTLICPSELNEQMLSTSHLRAKQGEFVNSILFEFSKKKD
>NZ_CP054012.1|WP_128577061.1|1776292_1778437_+|CRISPR-associated-helicase-Cas3'
MKQSKYKYIAHSENSNGAEQSMKQHSESVAELMRSFALADDFAEIYSYCGLLHDIGKYSKGFQNYIRSREEKEPHAKWGAYIALMNKLVNIAFPVIGHHAGLPNRDAMVETLGLCAKDENRWKNIQQAMEEDDFIISMCDNSSFNKIGNVFQKELFVRLLYSALVDADSLDTERHFQKEQYDARSCKILDVDALLAALNKRFDSFKQVTPLNELRTNVRLYAQSLANADQGCFSMTLPTGMGKTLTSLNWALYHAEAHPNIKRIVIVLPFISIIDQTANELKTIFKDYDVILEHHSNVNYEEADEEESYCKDSKYLATENWDYPIVITTAVQFFESLFSNQRSKCRKLHNLQDSIVIFDEIQTLPVNLAECTMKMLNDLLHLCRCSFLFCTATQPNFQTRKDFCGIDHITPLVENPASVFASTKRVKYISIDDYKAQSFESIADCVVEQNGSVLIVCNTKKKAMALFECLKTRSEIPVLHLSTNMCQAHRIEIIKRVRIKLKEGEKLILCSTQLIEVGVDMDFPVVFRELAPLESIIQSAGRCNREGNLKEGQVYLFQLEDQGQPSRQYIAFAQFAQLCYRGNEDRLSDADFYTDYYTNIIKNYSLKDNVTPKREKLMFQDVADMYHIINSNTTTLFIYQYDNESKHLYNEIKDKEYLSRKDYQKIAQYCVQVYEWFTKANANKISEISNGVKIWFGAYSKEIGLSNEDEIYYI
>NZ_CP054012.1|WP_011966341.1|1772908_1774258_-|MATE-family-efflux-transporter
MAKQNSPLVLGTEPIGKLLTQYAIPAIIAMTASSLYNMADSIFIGHGVGALAISGLALTFPLMNLAAAFGSLVGVGASTLVAVKLGQKDYEGANKVLGNVLILNVVLGVAFTIAFLFLLDPVLYFFGASENTISYARDYMRIILYGNVVTHMYLGLNAVLRSSGFPKMAMYATLASVVINCALNPLFIFGFGWGIKGSAWATVISQVISLTGQLIHFSGPKQLLHFKKGIYRLRSEIVKGILSIGLSPFLMNLCSCLIVILINRGLKEHGGDMAIGAYGIVNRIAFLFVMIIMGFNQGMQPIAGYNYGARLYSRVTDVTRLTMRWAVGVATLGFLLCQLVPSWIVRMFTSDGELISAASYGLHIVFAVFPIVGFQMVATNFFLSIGMSKKAIFLSLTRQMLFLIPCLILLPPLFGTLGVWISMPIADTVAAIVTAIVLVKQFKQFKYGT
>NZ_CP054012.1|WP_005856783.1|1771890_1772919_-|agmatine-deiminase-family-protein
MEHNVILPAEWYPQSAVQLTWPHENTDWAPILDEVIPCFVAIAKEVIKREKLLIVCPDETAVREQLGEVDYDRVIFREMDTNDTWARDHGGISVFDEGTPMLYDFVFNGWGMKFAANHDNLITRNLCHMKTFSGEVVPANMQPFVLEGGSIESDGKGTLMTTVECLASVNRNEYLQQEELERYLKDVFGLDRILWITSGYLAGDDTDSHVDTLARFCSEDTIAYVRCEDEEDEHYEELKAMEEEIKEFTRANGEPYRLIPLPMADKVEWEGERLPATYANFLIMNGAVLVPFYDSPKDEIAKAALREAFPDREIVGINCLPLIKQHGSLHCVTMQYPESFIE
>NZ_CP054012.1|WP_005856785.1|1770995_1771871_-|carbon-nitrogen-hydrolase
MKVGLIQQKNTADRAANIEKLKVNIRKAAREGAELVVLQELHNGLYFCQTEDTSMFDLAETIPGPSTETFGALAKELGIVLVLSLFEKRAPGLYHNTAVVLEKDGTIAGKYRKMHIPDDPAYYEKFYFTPGDLGFEPIDTSVGRLGVLVCWDQWYPEAARLMAMRGAEMLIYPTAIGWESSDTQEEKDRQLGAWVTIQRGHAVANGLPVISVNRTGHEPDPSGQTGGIRFWGNSFAAGPQGELLTVFPNDEEEVRVIEIDKTRSENVRRWWPFFRDRRIDAFGGLTERFLV
>NZ_CP054012.1|WP_009017489.1|1784946_1785423_+|GAF-domain-containing-protein
MAEELRIKNGDKQEMYETLLPQIASLVGNETDLIANMANIAAALKQTFGFFWVGFYRVIDNQLVLAPFQGPIACTRIKYGKGVCGTAWKEARTIIVPDVDAFPGHIACSSASRSEIVVPVIWEDKVIAVLDIDSDKLDSFNETDQIFLEKIVELLPHQ
>NZ_CP054012.1|WP_172884498.1|1785574_1788454_-|PD-(D/E)XK-nuclease-family-protein
MKPFLYQVASLFYEKWGAEVSRLAFVFPNRRTGLFFQKYLSEVADIPLFSPTILTINDLFIQLSGKQSADRISMLFTLYDIYIRQSGSTETFDEFLYWGEMLLNDFDDIDKYMANARMLFSNVTDLREIENDFDFLSDEQIAAIRSFWSSFYPRGDTPNQQQFLAVWQVLYDLYEEFRATLAAEGKGYEGMIFREVVESMERGESPDLPYEQIVFVGLNALSVSEERFLAQLQKRKIADFYWDYVSDKVTDPDNKASYFVSRNRKSFPSSMKLPPEEKVKTEIEVIGIPSGIGQAKHVYTLLSDWCKEAEMSSEEALRTAVILPDEHLLIPVLNAIPEQIRRINVTMGYPLAGTPVASLIEYILALQKNVRYIDRNPLFYFRDVLPVLNHRYILSTSPEIISSLVKEITENNKIYISHTELGKTPLLEILFTPVTGVEAFSDYLIKVLEELNKVMSALSDEEEEDAPQRTNDLEQEFIFHYFTTVNRMKEVMKDARIEMKIDTFFRLLKRVTDTITIPFHGEPLSGLQIMGVLETRALDFDRLIILSMNEGIFPQRKAANSFIPYNLRRGFGLPTYEHQDSVWAYHFYRLIERASHVSLLYDTRSNGLQTGEVSRFVHQLHYHYEVPMRDKLVVYNVSSSKTPPLAVPKREDIMRRLDAYRKGGSKAISASAINTYLDCPLKFYFSVVEGIREEEEVSETIESDVFGSILHKVMEELYKPFQGKMVTVDLLKAIRKDTALLTGAIARAFASEFFKTEVVRSLTGQNYLIGEMIRKYVEKILERDGKLPPFVYIESERKINGLISLSEHSEIRLKGFIDRVDEVRDAIRIIDYKSGSGTTTFSSIESLFNKEEKDRAKAVMQVFMYCWMYAHLTENKGKTIQPGIYYVRSLFADPFDPSVYHRIERGKSEKVEDFSGYAQAFEEGLRGCLDEIFNPEIPFTQTPTGKACSYCPFKGICGK
>NZ_CP054012.1|WP_008772101.1|1788523_1789516_-|L-glyceraldehyde-3-phosphate-reductase
MEFYKAEENRYADMIYRRCGRSGILLPAVSLGLWHNFGSVDVFSNFIQIAHAAFDHGVTHFDLANNYGPAYGSAEENFGRILKKGLGAYRDEMIISTKAGYDMWPGPYGNWGSRKYLMASLDQSLKRMGLEYVDIFYSHRPDPETPIEETMGALADIVRQGKALYVGISNYDADQTRKALAVLKEHKVPCLIHQARYSMFDRWTEPDLLPVLKEEGVGMIAFSPLAQGLLTDKYLRGIPENSRAAKSTGHLQTSQVTPEAVEKARKLNEVAARRGQTLAEMALAWLLKDERVTSVLIGASSVAQLMDNLKALDNISFSGEELQEIENILI
>NZ_CP054012.1|WP_128577058.1|1789538_1791071_-|sulfatase
MKKTQFIPIALLSVSAVANAQSASRPPNIILFLVDDMGWEDTSLPFWIQKTHYNEVYETPNMERLAKGGMMFTQAYASSISSPTRCSLITGTNAARHRVTNWTLFKDKTTDRESDVLTLPDWNYNGVAQVSGTNNTFVGTSFVQILKNNGYHTIHCGKAHFGAIDTPGEDPHHWGFEVNIAGHAAGGLASYLGENNYGHTKDGKPYAPNAIPGLEKYWGSDTFATEALTQEAIKALDKAKKYNQPFYLYMSHYAIHIPIDKDKRFYQKYIDKGLTAKEAAYAALIEGMDKSLGDLMDWLEKNGEVDNTIVIFMSDNGGLSSEPGWRDGEIHTQNYPLNSGKGSAYEGGVREPMIVRWPGVVKPGSKCDKYLIIEDFYPTILEMAGIKGYKTVQPIDGVSFMPLLKGTGDPSVGRSLFWNCPNIWGNDGPGIGPTCSVRNGDWKLIYYYETGKKELFNITEDIGEHNDVARQHPDIVKRLSGELGTYLRKVDGQRPSFKATGKPVPWPDEI
>NZ_CP054012.1|WP_005862150.1|1791252_1791714_-|DUF4293-domain-containing-protein
MLQRIQTVYLLIIVALTVATLFLPLAVLQQGDALFSFDASGLSTMIGEPELLYPAWGLFALTAIIAIIALVTIFLYKKRILQIRLCVFNALLILGFYGFFAFLIYSLKGDMEGASVSVKIALSFPLVNLILDYLAIRNIGADEALVRSLDRLR
>NZ_CP054012.1|WP_005856752.1|1791790_1792123_-|DNA-directed-RNA-polymerase-subunit-omega
MDYRKSNAPTNTVTRDMMKLSEETGNVYETVAIISKRANQISVEMKQDLEKKLQEFASYNDNLEEVFENREQIEISRYYEKLPKSTLIAAQEYEDGKVYYKNPAKEKNNF
>NZ_CP054012.1|WP_057318776.1|1792147_1792954_-|outer-membrane-protein-assembly-factor-BamD
MKKVVFLLMMTVLLSSCGEYNKILKSTDYELKYSYAKKYFNAKQYSKSATLLDELVTIFKGTAYAEESLYLLAQSYYGQKDYQTASQYFETYYTTYPKGEFTELSRFYSGYGLYLDSPDPRLDQSQTYKAIEQLQLYLEYYPQSERAEEAQNIMFELQEKLAYKELMATRLYFNLGTYMGNNFQSCVITAQNALKNYPYSKYREEFMFLIIRAKYELALVSVEEKLQGRYRDVVDEYYNYMNEYPEGNYVKQVTKFYDYASKRITDAY
>NZ_CP054012.1|WP_005856748.1|1793020_1793446_-|hypothetical-protein
MLIKQLSIFLENKKGRFTEVAKILGEAGVNMSAFTVAENSDFGILRLIVSDTEKAISVLREKLYAVSVADVVCLHCPNQPGALAKAMDIITSAGIFIEYMYAFSQGDAANVIIRPDDVNKCAEVLKANKLELIAASDLYKL
>NZ_CP054012.1|WP_005856746.1|1793466_1794768_-|phenylacetate--CoA-ligase
MIWNETIECMDREEMRKLQSLRLKRVVEHAYHNSPFYRKKMQEMGIAPDDIQTIDDITKLPFTVKQDLRDNYPFGLMAVPMSEIVRLHASSGTTGKPIVVGYTRKDLGIWAEVVARCLTAYGLTKNDSVQVSYGYGMFTGGLGAHAGVENIGGTVIPMSSGNTQKQIQLMHDFGAKGLACTPSYALYLAETIHQSGIPLEEFQLRVGAFGAEPWTENMRKELETKLNIKAYDIYGLTEICGPGVGGECECQNGTHLWEDHFFPEIVDPNTLQPVEPGQVGELVFTTLTKEGMPMLRYRTRDLTSLTYEKCACGRTAVRMGRILGRSDDMLIIRGVNVFPSQVESVILELPEFEAHYLIVVDRMNNTDTFQIQVEVRQEYYSDEMNKMIALKKKIAARMQSVIGLQPDIKIVEPRSIERSMGKAKHVIDKRKLV
>NZ_CP054012.1|WP_005856744.1|1794874_1795684_-|DUF1080-domain-containing-protein
MKTLVICTAMSAMILCACGGKNTQSTEETAKVVPMAVITPAINQLTDQEKAEGWALLFDGKTTKGWRGAHKDAFPDHGWMVKDGELIVQKSDGSESTNGGDIVTEGEYSAFEFSVDFKITEGANSGIKYFVTEQEKQKGSAYGLEFQLLDDAKHPDAKLYTTFPGSRTLGSLYDLKKSENIHFNGVGEWNTAVVKVFPNNHVEHWLNGVKVLEYERGSKEFRDLVKGSKYADPSYNAGGAFGEAPKGHILLQDHGDEVAFRNIKVKELK

Crispr_ID: NZ_CP054012_3

• CRISPR_ID: NZ_CP054012_3
• CRISPR_location: 2525672-2526791
• CRISPR_type: TypeII
• Repeat_type: NA
• Spacer_info: 14 spacers
• Cas_protein_info: cas2,cas1,cas9

Consensus repeat of NZ_CP054012_3

Consensus_repeat	Method
GTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC	CRISPRCasFinder
AGTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC	PILER-CR
GTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC	PILER-CR

spacers of NZ_CP054012_3

>3.1|2525719|30|NZ_CP054012|CRISPRCasFinder
TTCTCTGCGTTTTGGTTCAATGCGATTGCA
>3.2|2525796|30|NZ_CP054012|CRISPRCasFinder
TTTGTGCGCTACCAAAAGGCCCTGTCCCTA
>3.3|2525873|30|NZ_CP054012|CRISPRCasFinder
CTTATCGTACAGATAGGCCCGTACGGCACT
>3.4|2525950|29|NZ_CP054012|CRISPRCasFinder
GTAACCTAGACTTTCACGTTTAGACAAGA
>3.5|2526026|29|NZ_CP054012|CRISPRCasFinder
TGACACCACGCCTTAACCGCACCTGTCAA
>3.6|2526102|30|NZ_CP054012|CRISPRCasFinder
ACGTCGTTTGACATTTGCCAACCGATTACG
>3.7|2526179|29|NZ_CP054012|CRISPRCasFinder,PILER-CR
TGGCAATATCTCTTTGCAAAGTTGTATTA
>3.8|2526255|30|NZ_CP054012|CRISPRCasFinder,PILER-CR
AAAGGGGCTTAATACTTGCTTATTCATTGC
>3.9|2526332|31|NZ_CP054012|CRISPRCasFinder,PILER-CR
CCCCGGAGAACTTGATACCTTCCGCTGATTT
>3.10|2526410|29|NZ_CP054012|CRISPRCasFinder,PILER-CR
TTCATTAGAATAACCTCTATCTTCATAAC
>3.11|2526486|30|NZ_CP054012|CRISPRCasFinder,PILER-CR
CTGTTCATGTAATAAGAGACTTCATCAAAG
>3.12|2526563|29|NZ_CP054012|CRISPRCasFinder,PILER-CR
AATACTTCTTGGATTGTCTTCATGATCTA
>3.13|2526639|29|NZ_CP054012|CRISPRCasFinder,PILER-CR
CAGAACATTTGCTGAAATACTTCACGTAA
>3.14|2526715|30|NZ_CP054012|CRISPRCasFinder,PILER-CR
TGAGAAGTGCAATTCAAATTAAATCCCGTT
>3.15|2525796|29|NZ_CP054012|PILER-CR
TTTGTGCGCTACCAAAAGGCCCTGTCCCT
>3.16|2525873|29|NZ_CP054012|PILER-CR
CTTATCGTACAGATAGGCCCGTACGGCAC
>3.17|2525950|28|NZ_CP054012|PILER-CR
GTAACCTAGACTTTCACGTTTAGACAAG

CRISPR arrays and Neighbor proteins around NZ_CP054012_3

CRISPR arrays

The CRISPR arrays of NZ_CP054012_3

>merge|NZ_CP054012|3|2525672-2526791|CRISPRCasFinder,PILER-CR,PILER-CR
ATTGTGACTTGCTTTCATTTTAGTAACTTTGGACCATTGGAAACAGCTTCTCTGCGTTTTGGTTCAATGCGATTGCAGTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGCTTTGTGCGCTACCAAAAGGCCCTGTCCCTAGTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGCCTTATCGTACAGATAGGCCCGTACGGCACTGTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGCGTAACCTAGACTTTCACGTTTAGACAAGAGTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGCTGACACCACGCCTTAACCGCACCTGTCAAGTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGCACGTCGTTTGACATTTGCCAACCGATTACGGTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGCTGGCAATATCTCTTTGCAAAGTTGTATTAGTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGCAAAGGGGCTTAATACTTGCTTATTCATTGCGTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGCCCCCGGAGAACTTGATACCTTCCGCTGATTTGTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGCTTCATTAGAATAACCTCTATCTTCATAACGTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGCCTGTTCATGTAATAAGAGACTTCATCAAAGGTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGCAATACTTCTTGGATTGTCTTCATGATCTAGTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGCCAGAACATTTGCTGAAATACTTCACGTAAGTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGCTGAGAAGTGCAATTCAAATTAAATCCCGTTGTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC

>NZ_CP054012|3|3|2525672-2526791|CRISPRCasFinder
ATTGTGACTTGCTTTCATTTTAGTAACTTTGGACCATTGGAAACAGC	TTCTCTGCGTTTTGGTTCAATGCGATTGCA
GTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC	TTTGTGCGCTACCAAAAGGCCCTGTCCCTA
GTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC	CTTATCGTACAGATAGGCCCGTACGGCACT
GTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC	GTAACCTAGACTTTCACGTTTAGACAAGA
GTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC	TGACACCACGCCTTAACCGCACCTGTCAA
GTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC	ACGTCGTTTGACATTTGCCAACCGATTACG
GTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC	TGGCAATATCTCTTTGCAAAGTTGTATTA
GTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC	AAAGGGGCTTAATACTTGCTTATTCATTGC
GTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC	CCCCGGAGAACTTGATACCTTCCGCTGATTT
GTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC	TTCATTAGAATAACCTCTATCTTCATAAC
GTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC	CTGTTCATGTAATAAGAGACTTCATCAAAG
GTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC	AATACTTCTTGGATTGTCTTCATGATCTA
GTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC	CAGAACATTTGCTGAAATACTTCACGTAA
GTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC	TGAGAAGTGCAATTCAAATTAAATCCCGTT
GTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC

>NZ_CP054012|3|2|2525748-2526025|PILER-CR
AGTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC	TTTGTGCGCTACCAAAAGGCCCTGTCCCT
AGTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC	CTTATCGTACAGATAGGCCCGTACGGCAC
TGTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC	GTAACCTAGACTTTCACGTTTAGACAAG
AGTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGCTGACACCACGCCTTAACCGCACCTGTCAAGTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGCACGTCGTTTGACATTTGCCAACCGATTACGGTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC	TGGCAATATCTCTTTGCAAAGTTGTATTA
GTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC	AAAGGGGCTTAATACTTGCTTATTCATTGC
GTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC	CCCCGGAGAACTTGATACCTTCCGCTGATTT
GTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC	TTCATTAGAATAACCTCTATCTTCATAAC
GTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC	CTGTTCATGTAATAAGAGACTTCATCAAAG
GTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC	AATACTTCTTGGATTGTCTTCATGATCTA
GTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC	CAGAACATTTGCTGAAATACTTCACGTAA
GTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC	TGAGAAGTGCAATTCAAATTAAATCCCGTT


>NZ_CP054012|3|3|2526132-2526791|PILER-CR
	TTTGTGCGCTACCAAAAGGCCCTGTCCCT
AGTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC	CTTATCGTACAGATAGGCCCGTACGGCAC
TGTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC	GTAACCTAGACTTTCACGTTTAGACAAG
AGTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGCTGACACCACGCCTTAACCGCACCTGTCAAGTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGCACGTCGTTTGACATTTGCCAACCGATTACGGTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC	TGGCAATATCTCTTTGCAAAGTTGTATTA
GTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC	AAAGGGGCTTAATACTTGCTTATTCATTGC
GTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC	CCCCGGAGAACTTGATACCTTCCGCTGATTT
GTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC	TTCATTAGAATAACCTCTATCTTCATAAC
GTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC	CTGTTCATGTAATAAGAGACTTCATCAAAG
GTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC	AATACTTCTTGGATTGTCTTCATGATCTA
GTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC	CAGAACATTTGCTGAAATACTTCACGTAA
GTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC	TGAGAAGTGCAATTCAAATTAAATCCCGTT
GTTGTGATTTGCTTTCATTTTAGTAACTTTGAGCCATTGGAAACAGC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054012.1|WP_009017641.1|2538196_2538982_-|DUF4296-domain-containing-protein	unknown	unknown	gnl|CDD|379487
NZ_CP054012.1|WP_009017640.1|2543796_2546004_+|alpha-galactosidase	unknown	unknown	gnl|CDD|307952
NZ_CP054012.1|WP_005855554.1|2515575_2516595_+|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl|CDD|224936
NZ_CP054012.1|WP_005855552.1|2518357_2519641_-|MATE-family-efflux-transporter	unknown	unknown	gnl|CDD|240541
NZ_CP054012.1|WP_005855553.1|2516599_2518306_+|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl|CDD|173842
NZ_CP054012.1|WP_005855535.1|2539600_2539981_-|TraR/DksA-C4-type-zinc-finger-protein	unknown	unknown	gnl|CDD|274124
NZ_CP054012.1|WP_128576947.1|2537152_2537920_+|RNA-methyltransferase	unknown	unknown	gnl|CDD|349982
NZ_CP054012.1|WP_005855548.1|2522925_2524509_+|YfcC-family-protein	unknown	unknown	gnl|CDD|236934
NZ_CP054012.1|WP_005855555.1|2514665_2515571_+|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl|CDD|238847
NZ_CP054012.1|WP_005855547.1|2524505_2524805_-|thioredoxin	unknown	unknown	gnl|CDD|200072
NZ_CP054012.1|WP_005855551.1|2519668_2520886_-|MFS-transporter	unknown	unknown	gnl|CDD|340863
NZ_CP054012.1|WP_022193127.1|2520991_2521492_-|thiol-peroxidase	unknown	unknown	gnl|CDD|179055
NZ_CP054012.1|WP_005855543.1|2528276_2532551_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	cd09643_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl|CDD|375967
NZ_CP054012.1|WP_005855540.1|2534715_2537076_-|BamA/TamA-family-outer-membrane-protein	unknown	unknown	gnl|CDD|227116
NZ_CP054012.1|WP_005855534.1|2540148_2543571_-|isoleucine--tRNA-ligase	unknown	unknown	gnl|CDD|235681
NZ_CP054012.1|WP_005855545.1|2526898_2527231_-|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl|CDD|226043
NZ_CP054012.1|WP_005855549.1|2521657_2522929_+|DNA-recombination-protein-RmuC	unknown	unknown	gnl|CDD|376878
NZ_CP054012.1|WP_172884526.1|2527232_2528162_-|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl|CDD|274694
NZ_CP054012.1|WP_009276287.1|2514031_2514511_+|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl|CDD|225117
NZ_CP054012.1|WP_005865261.1|2538982_2539600_-|lipoprotein-signal-peptidase	unknown	unknown	gnl|CDD|237816

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
NZ_CP054012.1|WP_005855545.1|2526898_2527231_-|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	5.6e-32	105.1	0.1
NZ_CP054012.1|WP_172884526.1|2527232_2528162_-|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	6.1e-84	276.1	0.0
NZ_CP054012.1|WP_005855543.1|2528276_2532551_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	cd09643_cas9_CAS-II-A:CAS-II-B:CAS-II-C	1.7e-75	249.7	38.4

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP054012.1|WP_009017641.1|2538196_2538982_-|DUF4296-domain-containing-protein	gnl|CDD|379487	pfam14129, DUF4296, Domain of unknown function (DUF4296). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, and is approximately 90 amino acids in length.	9.68988e-30
NZ_CP054012.1|WP_009017640.1|2543796_2546004_+|alpha-galactosidase	gnl|CDD|307952	pfam02065, Melibiase, Melibiase. Glycoside hydrolase families GH27, GH31 and GH36 form the glycoside hydrolase clan GH-D. Glycoside hydrolase family 36 can be split into 11 families, GH36A to GH36K. This family includes enzymes from GH36A-B and GH36D-K and from GH27.	2.2065e-132
NZ_CP054012.1|WP_005855554.1|2515575_2516595_+|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl|CDD|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	5.57993e-106
NZ_CP054012.1|WP_005855552.1|2518357_2519641_-|MATE-family-efflux-transporter	gnl|CDD|240541	cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli DinF is a membrane protein that has been found to protect cells against oxidative stress and bile salts. The expression of DinF is regulated as part of the SOS system. It may act by detoxifying oxidizing molecules that have the potential to damage DNA. Some member of this family have been reported to enhance the virulence of plant pathogenic bacteria by enhancing their ability to grow in the presence of toxic compounds. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	1.4698e-155
NZ_CP054012.1|WP_005855553.1|2516599_2518306_+|acyl-CoA-dehydrogenase-family-protein	gnl|CDD|173842	cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.	0
NZ_CP054012.1|WP_005855535.1|2539600_2539981_-|TraR/DksA-C4-type-zinc-finger-protein	gnl|CDD|274124	TIGR02420, RNA_polymerase-binding_transcription_factor_DksA, RNA polymerase-binding protein DksA. The model that is the basis for this family describes a small, pleiotropic protein, DksA (DnaK suppressor A), originally named as a multicopy suppressor of temperature sensitivity of dnaKJ mutants. DksA mutants are defective in quorum sensing, virulence, etc. DksA is now understood to bind RNA polymerase directly and modulate its response to small molecules to control the level of transcription of rRNA. Nearly all members of this family are in the Proteobacteria. Whether the closest homologs outside the Proteobacteria function equivalently is unknown. The low value set for the noise cutoff allows identification of possible DksA proteins from outside the proteobacteria. TIGR02419 describes a closely related family of short sequences usually found in prophage regions of proteobacterial genomes or in known phage. [Transcription, Transcription factors, Regulatory functions, Small molecule interactions].	2.08226e-12
NZ_CP054012.1|WP_128576947.1|2537152_2537920_+|RNA-methyltransferase	gnl|CDD|349982	cd18109, SpoU-like_RNA-MTase, SAM-dependent RNA methylase related to SpoU-TrmH. RNA 2'-O ribose methyltransferase catalyzes the methyltransfer from S-adenosyl-L-methionine (AdoMet) to the 2'-OH group of ribose in tRNA or rRNA. It is part of the SpoU family of MTases, a subfamily of the SPOUT methyltransferase superfamily. The SPOUT methyltransferase superfamily is a large class of S-adenosyl-L-methionine (AdoMet or SAM)-dependent RNA MTases which are structurally characterized by a deep trefoil knot.	4.29524e-78
NZ_CP054012.1|WP_005855548.1|2522925_2524509_+|YfcC-family-protein	gnl|CDD|236934	PRK11588, PRK11588, putative basic amino acid antiporter YfcC.	3.46923e-109
NZ_CP054012.1|WP_005855555.1|2514665_2515571_+|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl|CDD|238847	cd01714, ETF_beta, The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.	1.73082e-76
NZ_CP054012.1|WP_005855547.1|2524505_2524805_-|thioredoxin	gnl|CDD|200072	TIGR01068, Thioredoxin-like_protein_slr0233, thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model. Any protein that hits once with a score greater than the second (per domain) trusted cutoff may be taken as thioredoxin. [Energy metabolism, Electron transport].	1.59993e-36
NZ_CP054012.1|WP_005855551.1|2519668_2520886_-|MFS-transporter	gnl|CDD|340863	cd06173, MFS_MefA_like, Macrolide efflux protein A and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of Streptococcus pyogenes macrolide efflux protein A (MefA) and similar transporters, many of which remain uncharacterized. Some members may be multidrug resistance (MDR) transporters, which are drug/H+ antiporters (DHAs) that mediate the efflux of a variety of drugs and toxic compounds, conferring resistance to these compounds. MefA confers resistance to 14-membered macrolides including erythromycin and to 15-membered macrolides. It functions as an efflux pump to regulate intracellular macrolide levels. The MefA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.1153e-53
NZ_CP054012.1|WP_022193127.1|2520991_2521492_-|thiol-peroxidase	gnl|CDD|179055	PRK00522, tpx, thiol peroxidase.	5.89963e-95
NZ_CP054012.1|WP_005855543.1|2528276_2532551_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl|CDD|375967	pfam18541, RuvC_III, RuvC endonuclease subdomain 3. Cas9 proteins are abundant across the bacterial kingdom, but vary widely in both sequence and size. All known Cas9 enzymes contain an HNH domain that cleaves the DNA strand complementary to the guide RNA sequence (target strand), and a RuvC nuclease domain required for cleaving the noncomplementary strand (non-target strand), yielding double-strand DNA breaks (DSBs). The crystal structures of type II-A and II-C Cas9 proteins highlight the features in Cas9 enzymes that support their function as RNA-guided endonucleases. Cas9 enzymes adopt a bilobed architecture composed of a nuclease lobe containing juxtaposed RuvC and HNH nuclease domains and a variable alpha-helical lobe likely to be involved in nucleic acid binding. The RuvC domain forms the structural core of the nuclease lobe, a six-stranded beta sheet surrounded by four alpha helices, with all three conserved subdomains (I, II, III) contributing catalytic residues to the active site.	1.29548e-46
NZ_CP054012.1|WP_005855540.1|2534715_2537076_-|BamA/TamA-family-outer-membrane-protein	gnl|CDD|227116	COG4775, COG4775, Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane].	4.11657e-22
NZ_CP054012.1|WP_005855534.1|2540148_2543571_-|isoleucine--tRNA-ligase	gnl|CDD|235681	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed.	0
NZ_CP054012.1|WP_005855545.1|2526898_2527231_-|CRISPR-associated-endonuclease-Cas2	gnl|CDD|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	5.13284e-27
NZ_CP054012.1|WP_005855549.1|2521657_2522929_+|DNA-recombination-protein-RmuC	gnl|CDD|376878	pfam02646, RmuC, RmuC family. This family contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures.	8.10235e-86
NZ_CP054012.1|WP_172884526.1|2527232_2528162_-|type-II-CRISPR-associated-endonuclease-Cas1	gnl|CDD|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	4.09397e-120
NZ_CP054012.1|WP_009276287.1|2514031_2514511_+|helix-turn-helix-transcriptional-regulator	gnl|CDD|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	1.04816e-14
NZ_CP054012.1|WP_005865261.1|2538982_2539600_-|lipoprotein-signal-peptidase	gnl|CDD|237816	PRK14788, PRK14788, lipoprotein signal peptidase; Provisional.	7.41418e-91

Protein sequences

>NZ_CP054012.1|WP_005855547.1|2524505_2524805_-|thioredoxin
METFDDIIKGDKPVLVDFFATWCGPCKVLSPTVEALGKELAGQVRVLKIDVDKNEALATQLRIQSVPTLIIFKKGEIVWRSSGVMDHGSLLRKAQSYID
>NZ_CP054012.1|WP_005855548.1|2522925_2524509_+|YfcC-family-protein
MKKRQIPHTYVIIFYIILFCAALTWIIPGGQYTENISPDGERTVVYESVESVPQTWEVLSAFYKGFVDKADIIVFILIIGGAFWIVNDSKAFDIGTVSFLRKARKMENNPILHKIGIDNFLLTAIMLLFSIFGAVFGMSEETIAFCLVLVPMAISMGYDSITGVCMVFIAAGLGFAGAILNPFTIGIAQGLAGIPLFSGIEYRIVCWCIINVVGFTWILRYAAKVKKNPQLSPVYEDDQYWRDLHNTHSLEIVYRTPKAAWVSFILLAIILAVFSVYYPQTSLEIGNSVIEGLPLIPILSVAFIISSIFTLRKTVHLYILNLLFFTIFFLITGVMGYGWYIMEIATLFFALGIAAGIANGRDPNELVKLFLEGCKDIMSAALVVGLAGGIIVILQEGKVIDTILFNLAKGMEGLGQVATVGMMYVIQTLINLVIPSGSAKAALTMPIMAPFSELIGLSKQATVMAFQFGDGFTNLITPTSGVLIAVLGVSRIPYDKWFKWAWKFILVLVILGFLLLIPTVLIPMNGF
>NZ_CP054012.1|WP_005855549.1|2521657_2522929_+|DNA-recombination-protein-RmuC
MDWIIIGGLLIIIVTQILLRPKQLNNNKEDLEKLLNEIQRSFDRIEKNFREDFRLNREESRLVAKDNREELARSMNEFKEAFERGIDSFNRLQKEKFAALDERQQRLVDNTEKRLEEIRVTVDEKLQKTLNDRIGQSFRLVTEQLESVQKGLGEMQTLAQDVGGLKRVLSNVKTRGNIGEIQLSMLLEQLLAPEQYEANVHTRKGSDAVVEFAVKLPGRDDAREFVYLPIDAKFPKDVYEQLLDAYDAADSQAIETAGKLLETTIKKMAKDISDKYLAPPATTDFGIMFLPFEGIYAEVVRRSALLEDLQRNYKVVVTGPTTLAAILNSLQMGFRTLAIQKHSGEVWTILGAVKKEFEKVGGMLEKAQKNLQTASGQIEEVLGTRTRAIQRKLKDVDTLSDREARAILPEIGILTEEDEKAES
>NZ_CP054012.1|WP_022193127.1|2520991_2521492_-|thiol-peroxidase
MAKVTLKGNEIHTNGELPKVGTEAPDFKGVKSDLSELSLSDLKGKKVVINVFPSLDTSVCAASVRRFNKEAASHPDTVVLAVSKDLPFAHGRFCTTEGIDKVITLSVFRCSCFEDKYGMLLVDSPLKGLLARGVIVVDGAGKVVYEELVPEITTEPNYDAALAALK
>NZ_CP054012.1|WP_005855551.1|2519668_2520886_-|MFS-transporter
MDNWKRVFAIIWTGQFLSILTSSIVNFAIVLWLSLETGSAEVLAFATMAALLPQSVLGLFTGIFIDRWKRKRVMIMADSFIAFCTLILAVLFYFDLAKISHIYVLLALRSVGSAFHMPAMQASVPLLAPKSELMRIAGINQVIQSVCNIAGPALAGLFITMMKMTNILLLDVAGAAFACLSLCFVFIPDPSHEERNSELHLWREAKEAIMEVRNQYGLSWLFLLSILATFVIMPVSVLFPLMTLNHFAGNAFQVSLVEVSWGGGALLAGALLGLKKYRWNEILLINGMYIALGLTFLFSGLLPVSGFIWFAVLTALGGVCGSLYFATFTTVIQSRIDPGVMGRVFSFYMSFSMLPSMIGLLSTGFLADSIGLGNTFIISGGFLCLIGIISFFIPSLISLKESFKR
>NZ_CP054012.1|WP_005855552.1|2518357_2519641_-|MATE-family-efflux-transporter
MNKKILQLAIPSIISNITVPLLGLIDVAIVGHLGSASYIGAIAVGGMLFNIIYWIFGFLRMGTSGMTSQAYGKRDLTEVTRILFRSVGVGFLISLGLLILQYPILKVAFTLIDATEEVKQWASLYFNICIWGAPAVLGLYGFAGWFIGMQNSRFPMFIAIAQNIVNIVASLCFVFVLGMKVEGVALGTLIAQYAGLLMAFALWLKYYKRLKAYIDWNGLWGREAMRRFFSVNSDIFFRTLCLVAVTTFFTSTGARQGDVILAVNTLLMQLFTLFSYIMDGFAYAGEALAGRFIGAKNDVGLRKCIRLLFLWGIGLSLSFTILYALGGKNFLGLLTNDTSVIEASGDYFYWVLAIPLCGFSAFLWDGIFIGATATRQMLYSMLVASGTFFIMYYLFYQSMGNHALWMAFLWYLSLRGGMQWVLWRLKK
>NZ_CP054012.1|WP_005855553.1|2516599_2518306_+|acyl-CoA-dehydrogenase-family-protein
MANFYTDNPSLKHHLHHPLMKRIVELKERGYADKDTYDYAPIDFEDAMDSYEKVLEIVGEICGEIIAPNAEGVDHEGPTVANGRVTYASGTQQNLDAVRKAGLMGIAMPRRYNGLNFPIVPYIMAADLVSRADAGFENLWGLQDCAETLYEFGNEDQRQRYIPRVCDGETMSMDLTEPDAGSDLQSVMLKASYNEADGCWYLNGVKRFITNGDADIHLVLARSEEGTKDGRGLSMFIYDKRNGGVNVRRIENKMGIKGSPTCELVFKNAKAELCGDRKLGLIKYVMALMNGARLGIMAQAVGLSEAAYREAYAYALDRKQFGKSIIEFPAIAEIIALMRAKADASRSMLYETARFVDVYKALDDISKERKLTPEERQEFKKYSKLADAFTPMGKGMTTEYANQNAYDAIQVHGGSGFMKDYACERIYRDARITNIYEGTTQLQVVAAIRHVTTGTYLNQIREYQAIEYKPELEALKNKLAAMTEKYEKVVAKVTETKDNEYIDFQARRMVEAAAHCVFGYLLLQDANKDDSFRRSAEVYVNYGQAEIDKIESFINNFNREDLVYYKQQ
>NZ_CP054012.1|WP_005855554.1|2515575_2516595_+|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNNVFVYCETEGTNVADVSLELLTKGRKLANQLGCGLEAIVAGSGLEGVEKQVLPFGVDKVHVFDAPGLFPYTSLPHSSILINLFKEEKPQICLMGATVIGRDLGPRVSSALTSGLTADCTSLEIGSHEDKKAGITYENLLYQIRPAFGGNIVATIINPEHRPQMATVREGVMKKEVLDENYKGEVIHHDVAKYVPETDYVVKVIDRHVEKAKHNLKGAPIVVAGGYGVGSKENFNLLFDLAKELHAEVGASRAAVDAGFCDHDRQIGQTGVTVRPKLYIACGISGQIQHIAGMQDAGIIISINNDENAPINTIADYVINGTVEEVIPKMIKYYKKNSK
>NZ_CP054012.1|WP_005855555.1|2514665_2515571_+|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MSLRIIVLAKQVPDTRNVGKDAMKADGTINRAALPAIFNPEDLNALEQALRLKDAYPGTTVTLLTMGPGRAAEIIREGLYRGADGGFLLTDRAFAGADTLATSYALATAIKKINDYDIIIGGRQAIDGDTAQVGPQVAEKLGLTQITYAEEILNVDKEAGRITVKRHIDGGVETVEGPLPIVITVNGSAAPCRPRNAKLVQKYKHAMGKQERAVQPACHQDGTPTLRYPELYETRPYLDIQEWSVADVNGDLVQCGLSGSPTKVKAIENIVFQAKESKTISSADQEVEDLIVELLANHTIG
>NZ_CP054012.1|WP_009276287.1|2514031_2514511_+|helix-turn-helix-transcriptional-regulator
MEETFKRIPPEDVFITVFKRKPTEEELWMGVPPDFDGNRPSGNNLIDLFAYLIRKYGRMDTSEYARIMQLKTSELRGAILAIGGMSAMEWRNRYLLLEAQELMERTDMSITAIAAKLGFSQPSVFSKFFRTLTKSQPWEWRIEKKKPGSNRKRTYHCYE
>NZ_CP054012.1|WP_005855545.1|2526898_2527231_-|CRISPR-associated-endonuclease-Cas2
MDRFSEYRVMWVLVLFDLPTETKKEKKAYVDFRKNLQRDGFTMFQFSIYVRHCASSENAAVHVKRVKSFLPEHGNVGIMCITDKQFGNIELFYGKKTVEVNTPGQQLELF
>NZ_CP054012.1|WP_172884526.1|2527232_2528162_-|type-II-CRISPR-associated-endonuclease-Cas1
MIKKTLYFGNPVYLSLKNAQLMIKLPEVVRNDTLPESFKRTSEVTKPIEDIGVVVLDHKQITISSGVLEALLENNCAVITCNSKSMPVGLMLPLYGNTTQNERFRQQLDASLPLKKQLWQQTIKTKIENQAAVLKECSGAEVRCMYAWASDVKSGDTSNLEARAAAYYWKNLFWIEGFTRDREGIPPNNLLNYGYAILRAVVARSLVASGLLPTLGIHHHNRYNAYCLADDIMEPYRPYVDQLVCGIIKQGVDYAELTRELKAQLLTIPVLETYMSGKRSPLMVAVGQTTASLYKCFSGELRRISYPEM
>NZ_CP054012.1|WP_005855543.1|2528276_2532551_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MKRILGLDLGTNSIGWALVNEAETDEEVSSIIRLGVRVNPLTVDETQNFEKGKSITTNAERTLKRSMRRNLQRYKLRRDALVEFLKELGFITDETILSEQGNRTTFETCRLRAKAAEEEISLEELSRVLLMINKKRGYKSSRKVKKEEDGVLIDGMEIAKKLYEEDLTPGQLCSQLLESGKKVLPDFYRSDLQEELDRIWSVQKQFHPDVFCDAAKEEIKGKNRSQTWAILANYFVWKEEVVGWNDREAKNETIEKECKLVGLKRTTKGYELKKENYRWRAQALTEQLGLEEIAVVLQEINGQINASSGYLGAISDRSKVLYFNHQTVGQYQMAELDKNPHASLRNMVFYRQDYLDEFDRIWEKQAEFHKELTAELKKEIRDMIIFYQRRLKSQKGLISFCEFERLEIVVEKDGKKQTKVIGCKVIPRSHPLFQEFKVWQTLNDIKVLGREKKRNALSASESRALYPEEKEILARELAIKENMKKADVLKLLFENPQELDLNFKQIDGNRTGFSLFSAYSKMIEKYGYEPLDFKKPADEIIGQLRTIFTDLGWNTNLFTIDLTKEGKELEMQPYFRLWHLLYSFEGDNTSTGNGKLIEKIMQLCGVEKEYAVELASLSFQDDYGSLSAKAIKRILPYLKEGNLYDVACEYAGYRHSKSSLTKEEIENKVLKGKLEVLPKNSLRNPVVEKILSQMVNVINTIIDTYGKPDEIRVELARELKKSAKEREELTKAIAKSTREHEEIRKLLQDEFGMMNVSRNDIIRYKLYEELKDNGYKTLYSNQYIPKEKIFSKEIDIEHIIPQSRLFDDSLSNKTLEYKAINIEKGNKTAYDFVKEKYGEEGLQQYINRCESLFNDKKAKLRKLKMEQKDIPDGFIDRDLRNTQYIAKKALAMLNEICRRVVATTGSITDQLREDWQLVDVMKELNLPKYEALGFVETYEDKDGRKIKRIKDWTKRNDHRHHAMDALTVAFTKDAFIQYFNNKNAAQDSGNRNHTNIIGIKTRYFDKGRALPPIPLEQFRIEAKQHLEKLLVSIKAKNKVVTVNVNRTKKRKGENTKIQQTPRGQLHLETVYGSHKQYVTKIEKVNASFDAAKIATVSKRAYRNALLKRLETFGNDPKKAFTGKNALEKNPLYADKYQTIRVPEKVQTVEFETIYTIRKPVDPALNVDKVVDVKVRAILERRLKEYGGDPKKAFVNFWENPIWLNKEKGISIKRVSIRGINNAQSIHVKKDKNGNPIWDENGKQIPVDFVNTGNNHHVAIYRKPVLDKKGQVTFDEDGNLMYELDEVVVPFFEAVTRANLGLPIIDKDYRKSEGWQFLFSMKQNEYFVFPNEKTGFNPKEVDLLNPDNYAMISPNLFRVQTMSKVMYGNNVVRDYKFRHHLETTVKDMKELKDIAYKQYKTLSFGNSVVKIRINHIGQIVSVGEY
>NZ_CP054012.1|WP_005855540.1|2534715_2537076_-|BamA/TamA-family-outer-membrane-protein
MMNRSLRICYFICIVLLLTSCSTTKFVPDGEYLLDKVEIVSDNRDYKSADLKSYLRQQPNFKVFGLMKWQLFVYDWSGKNEKKWINKQLRRIGEPPVVLDTMLVEQSAMELERFYINKGYVHADVSTTIDTARHKKAVVTYHIKANDPYRIRNYTMKFPDPKIDSLAHLKAPRRSPLASAFRSSQEEYNQLVKEGTLFDRDILDKERERITTLLRWNGYYGFNRDYLGYIADSSFNQNVVDLDMSMKPYRKVLPNGSVEDQPHRQYYIKDVTVLTDYNPMGVGEDASFMATDTMLSAGVNIVYGRNGKSIRPSVLRRSTYIRPGQLFSEKNIEQTYSAFASLRALRNVNIRFTEVEERDTMKLDCYILTSPAKINTVGVDLEGTNSAGDYGFASSLNYQHRNIFRGSELFSARVRGAYEALSGNKANGFGNYWELGAEGSLLFPRFLFPFLSSDFRRRLRASTEAKISYNLQKRPEYTRAILSGGWSYIWQDRGNTQARHTFKLVDLNYVYLPDKNMDFINSLPDYMVLYNYTNHFIMSSGYTYSFSNYSPQNRLRNTHSLRASVEVAGNLLSAFSHLTGAKKNDDGYYELFGTEYAQYVKLDFDFSKGIVLDSRNKLAFHIGVGVGMAYGNSNYLPFERAYFSGGANSVRGWSVRELGPGSMEVDSTTSFALQSGDIRLDLNLEYRTKLFWKFELAAYIDAGNIWTRNVSDERYKAGNFDFSRFYKEIAVSYGLGLRLDFDFFLLRLDTGFKAYNPQEKKSRRWAITRPNFKDNFALHFAVGYPF
>NZ_CP054012.1|WP_128576947.1|2537152_2537920_+|RNA-methyltransferase
MLSKTKVKYIRSLELKKFRNENNVFVAEGNKLVADMLPAFECELLIAKPSWMATQGDIPAKELLVAEEDDIRKASFLKNPQDVLAIFKRPNWDITEITPEKELVLALDGIQDPGNLGTIIRLADWFGISHIVCSKDTADVFSPKTVQATMGALAHVKIHYTDLETFLQAQSAQAIPLYGTFLGGENLYEKTLSRNGILIMGNEGNGIRPAIEAFVNEKLYIPNYPEGRDTSESLNVAIATAVVCAEFRRRQGNPA
>NZ_CP054012.1|WP_009017641.1|2538196_2538982_-|DUF4296-domain-containing-protein
MRRKLRIYGMALLATTLLAACSKVPDGILSEKKMQGVLTDMLLAEAMVNVDYNTYKSDTMKLALYESVFRKHDITQAVYDSSLVWYGRNLDIYMEVYNRVLADLNKRINNLGDVQADAAPVSNRDSVDIWPRRSYLVLSPTSVFNGVTFDIRPETNYSSGSSFVLGVRVWGLNNKMAYKPEVRLSADQGDTTLTVNSKITKDGYHETILKTIPTKKVKRVFGYIRMDNMDTTYYKVYIDSLSLMKYNYGKELAELPKDSIK
>NZ_CP054012.1|WP_005865261.1|2538982_2539600_-|lipoprotein-signal-peptidase
MRYSKGWGAVLIIILLLLLDQALKIWIKTHMQLHESIEITPWFYLYFTENPGMAFGIEVIGKLFLSVFRIVAVLFIGYYLYKLVKENYKFGFIACISLVFAGAVGNIIDSIFYGVIFDHSFGQLATFMPEGGGYASWLHGKVVDMFYFPLIETVFPDWVPIWGGQEFVFFRPIFNLADSAICVGVFLLLIFYRHTLSASLSKEEK
>NZ_CP054012.1|WP_005855535.1|2539600_2539981_-|TraR/DksA-C4-type-zinc-finger-protein
MAEKTRYSDAELEEFRAIILEKLEIAKRDYELLRSGVTNSDGNDVADTSPTFKVLEEGASTLSKEEAGRLAQRQMKFIQNLQAALIRIENKTYGICRETGKLIPKERLRAVPHATLSIEAKQGGAK
>NZ_CP054012.1|WP_005855534.1|2540148_2543571_-|isoleucine--tRNA-ligase
MSKKFTEYSKFDLSNVNKEVLKKWKDGDIFHKSLETREGHPTFVFYEGPPSANGMPGIHHVIARSIKDIFCRYKTMKGFLVNRKAGWDTHGLPVELGVEKALGITKEDIGKKISVAEYNAACRKDVMKFTKEWEDLTQKMGYWVDMENPYITYDNRYIETLWYLLKELYKKGLLYKGYTIQPYSPAAGTGLSTHELNQPGCYRDVKDTTCTAQFHILDPKPEMAQFGDPYFLAWTTTPWTLPSNTALCVGPNITYLAVQTYNPYTGIPMTAVIAKDLLSAYFNPKAAELSLSDYKPGDKLVPFSVVGEWKGSELAGMKYEQLIPWVNPGEGAFRVITGDFVTTEDGTGIVHIAPTFGADDNRVAKTFGVPPLMMQDKDGNMRPMVDMTGKFYKLEDLAPEFVQNCMNASDYDPWQGKFVKNAYDDTKTDKDETLDIEICMMLKAQNRVFKIEKHVHNYPHCWRTDKPVLYYPLDSWFIRTTACRERMIELNNTINWKPQSTGTGRFGKWLENLQDWNLSRSRYWGTPLPIWRTEDGSEEKCIGSVVELFGEIEKSVKAGFMESNPYKDFAPGDYTKENYEKIDLHRPYVDDIILVSASGKPMKRETDLIDVWFDSGAMPYAQIHYPFENLKEFDNRQIYPADFIAEGVDQTRGWFFTLHALGTMIFDSVAYKAVVSNGLVLDKNGNKMSKRLGNAVDPFSTIEKYGSDPLRWYMITNASPWDNIKFDIDGIEEVRRKFFGTLYNTYSFFALYANVDGFDYSDPDVEWSKRPEIDRWILSLLNSLVKDVDGYLEAYEPTRAGRAISDFVNDNLSNWYVRLNRRRFWGGGMTEDKLSAYQTLYTCLETVAKLMAPIAPFYADQLFLDLVAVTGRENVESVHLSDFPVYDESKIDKNLEERMQMAQDVSSMVLALRRKVNIKVRQPLHTVMIPVVDAHQQESIEAVKNLILNEVNVKELKFVDNTAGILVKKIKPDFKKLGPRYGKIMKALAATIQSMSQEDINAFEKAGTFTLMVDGQEAVLERTDVEIISEDIPGWLVANEGRLTVALDITVTEDLRKEGLARELVNRIQNLRKSSGFDITDKIHVSILSCEEMDEAIYDYKDYIANQVLAESIEIMDNAISDATELDFEDFKLSVKIEKA
>NZ_CP054012.1|WP_009017640.1|2543796_2546004_+|alpha-galactosidase
MNIKSKFGYLCCASLLTTSLWAQDVLISTRNTSLLLDAPVGGEVRFIYYGDKLSTSDAATLLETEQKTFSAYPVYGLNCPSESALSVTHGDGNMTLQLEVIKVDTRKEQTADITTIRLKDKVYPFYMNLCYRTYPDADIIETWTEITHEEKKAITLNRFASAYLPIRKGDVWVSHLYGSWANEAQLAQEPLRPGIKMIKNKDGIRNSHTAHAEVMISLDGKPKENTGSVIGAALCYSGNYKLFFDTDDSDYHHFFAGINEENSAYTLKAKESFRTPELALTYSKDGLSGSSRNFHAWARKHKIANGATARKILLNSWEGVYFDINQEGMDQMMSDIQSMGGELFVMDDGWFGDKYPRNKDNSSLGDWMVDARKLPRGIEGLIADANKHGIKFGIWIEPEMANTTSELYEKHPEWVLKAPNREIVLGRGGTQVVLDLSNSEVQDFIFGIVDNLMTTYPEIDYIKWDANMSILNHGSQYLPSDQQSHMYIEYHEGFKKVCERIRAKYPDLTLQACASGGGRANYGVMPYFDEFWVSDNTDALQRIYMQWGTSYFFPAIAMASHISAAPNHQTFRVIPLKYRIDVAMSGRLGMEIQPKNMTEEEKTLCRKAIADYKTIRPVVQFGDIYRLVSPYDRLGVASLMYTSPEKDKAVFYWWKTEHFVNQHLPRVKMNGLSPDKKYRVCELNRIDNEPLAFEGKAFTGEYLMANGLEIPYNHIVDYHKQNDYSSRVLYLEEVK

Crispr_ID: NZ_CP054012_4

• CRISPR_ID: NZ_CP054012_4
• CRISPR_location: 4157090-4157180
• CRISPR_type: Orphan
• Repeat_type: NA
• Spacer_info: 1 spacers

Consensus repeat of NZ_CP054012_4

Consensus_repeat	Method
AGAGATGGGGCACGCCCCGTCTC	CRISPRCasFinder

spacers of NZ_CP054012_4

>4.1|4157113|45|NZ_CP054012|CRISPRCasFinder
AACCCCTCTAAATGGTAACTTTAAATAATACCCATCAGTCTGTGC

CRISPR arrays and Neighbor proteins around NZ_CP054012_4

CRISPR arrays

The CRISPR arrays of NZ_CP054012_4

>merge|NZ_CP054012|4|4157090-4157180|CRISPRCasFinder
AGAGATGGGGCACGCCCCGTCTCAACCCCTCTAAATGGTAACTTTAAATAATACCCATCAGTCTGTGCAGAGACGGGGCACGCCCCGTCTC

>NZ_CP054012|4|4|4157090-4157180|CRISPRCasFinder
AGAGATGGGGCACGCCCCGTCTC	AACCCCTCTAAATGGTAACTTTAAATAATACCCATCAGTCTGTGC
AGAGACGGGGCACGCCCCGTCTC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054012.1|WP_022193052.1|4139778_4141329_+|RNA-methyltransferase	unknown	unknown	gnl|CDD|236981
NZ_CP054012.1|WP_057319841.1|4159781_4161980_+|glycoside-hydrolase-family-3-C-terminal-domain-containing-protein	unknown	unknown	gnl|CDD|185053
NZ_CP054012.1|WP_022193055.1|4157230_4159759_+|DUF4982-domain-containing-protein	unknown	unknown	gnl|CDD|225789
NZ_CP054012.1|WP_036644236.1|4167487_4168645_+|DUF4221-family-protein	unknown	unknown	gnl|CDD|372853
NZ_CP054012.1|WP_005860205.1|4162128_4163079_+|Dyp-type-peroxidase	unknown	unknown	gnl|CDD|367887
NZ_CP054012.1|WP_036630644.1|4166082_4166943_+|DUF1573-domain-containing-protein	unknown	unknown	gnl|CDD|377880
NZ_CP054012.1|WP_172716824.1|4167149_4167368_+|hypothetical-protein	unknown	unknown	gnl|CDD|372896
NZ_CP054012.1|WP_036630135.1|4168655_4169717_+|hypothetical-protein	unknown	unknown	gnl|CDD|374184
NZ_CP054012.1|WP_005860216.1|4147785_4148841_-|M20-family-metallo-hydrolase	unknown	unknown	gnl|CDD|349902
NZ_CP054012.1|WP_005860220.1|4145961_4146411_+|DedA-family-protein	unknown	unknown	gnl|CDD|224159
NZ_CP054012.1|WP_036630133.1|4169735_4171769_+|transglutaminase-domain-containing-protein	unknown	unknown	gnl|CDD|376628
NZ_CP054012.1|WP_128577285.1|4164155_4165061_+|transcriptional-regulator	unknown	unknown	unknown
NZ_CP054012.1|WP_005863591.1|4143546_4144818_+|phosphoribosylamine--glycine-ligase	unknown	unknown	gnl|CDD|234856
NZ_CP054012.1|WP_005860231.1|4138748_4139648_+|serine-acetyltransferase	unknown	unknown	gnl|CDD|200082
NZ_CP054012.1|WP_036630645.1|4165418_4165985_+|RNA-polymerase-sigma-70-factor	unknown	unknown	gnl|CDD|274376
NZ_CP054012.1|WP_005860222.1|4144960_4145977_+|hypothetical-protein	unknown	unknown	unknown
NZ_CP054012.1|WP_005860212.1|4149966_4154046_+|response-regulator	unknown	unknown	gnl|CDD|223715
NZ_CP054012.1|WP_005860214.1|4148842_4149763_-|riboflavin-biosynthesis-protein-RibF	unknown	unknown	gnl|CDD|235536
NZ_CP054012.1|WP_036630667.1|4141309_4143511_+|S9-family-peptidase	unknown	unknown	gnl|CDD|366374
NZ_CP054012.1|WP_005860218.1|4146507_4147782_-|polysaccharide-biosynthesis-C-terminal-domain-containing-protein	unknown	unknown	gnl|CDD|240533

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
NZ_CP054012.1|WP_022193052.1|4139778_4141329_+|RNA-methyltransferase	gnl|CDD|236981	PRK11783, rlmL, bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL.	3.23983e-129
NZ_CP054012.1|WP_057319841.1|4159781_4161980_+|glycoside-hydrolase-family-3-C-terminal-domain-containing-protein	gnl|CDD|185053	PRK15098, PRK15098, beta-glucosidase BglX.	8.62985e-122
NZ_CP054012.1|WP_022193055.1|4157230_4159759_+|DUF4982-domain-containing-protein	gnl|CDD|225789	COG3250, LacZ, Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism].	7.06121e-78
NZ_CP054012.1|WP_036644236.1|4167487_4168645_+|DUF4221-family-protein	gnl|CDD|372853	pfam13970, DUF4221, Domain of unknown function (DUF4221). This family of bacterial proteins contains highly conserved asparagine and cysteine residues. The function is not known.	6.36491e-42
NZ_CP054012.1|WP_005860205.1|4162128_4163079_+|Dyp-type-peroxidase	gnl|CDD|367887	pfam04261, Dyp_perox, Dyp-type peroxidase family. This family of dye-decolourising peroxidases lack a typical heme-binding region.	2.62795e-106
NZ_CP054012.1|WP_036630644.1|4166082_4166943_+|DUF1573-domain-containing-protein	gnl|CDD|377880	pfam07610, DUF1573, Protein of unknown function (DUF1573). These hypothetical proteins, from bacteria such as Rhodopirellula baltica, Bacteroides thetaiotaomicron, and Porphyromonas gingivalis, share a region of conserved sequence towards their N-termini.	1.58604e-24
NZ_CP054012.1|WP_172716824.1|4167149_4167368_+|hypothetical-protein	gnl|CDD|372896	pfam14055, NVEALA, NVEALA protein. This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 75 and 92 amino acids in length. There is a conserved NVEALA sequence motif.	1.91106e-06
NZ_CP054012.1|WP_036630135.1|4168655_4169717_+|hypothetical-protein	gnl|CDD|374184	pfam15869, TolB_like, TolB-like 6-blade propeller-like.	7.82643e-16
NZ_CP054012.1|WP_005860216.1|4147785_4148841_-|M20-family-metallo-hydrolase	gnl|CDD|349902	cd05651, M20_ArgE_DapE-like, M20 peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases. Peptidase M20 family, uncharacterized protein subfamily with similarity to acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase (ArgE/DapE) subfamily. ArgE/DapE enzymes catalyze analogous reactions and share a common activator, the metal ion (usually Co2+ or Zn2+). ArgE catalyzes a broad range of substrates, including N-acetylornithine, alpha-N-acetylmethionine and alpha-N-formylmethionine, while DapE catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelate (L,L-SDAP) to L,L-diaminopimelate and succinate. Proteins in this subfamily are bacterial, and have been inferred by homology as being related to both ArgE and DapE.	0
NZ_CP054012.1|WP_005860220.1|4145961_4146411_+|DedA-family-protein	gnl|CDD|224159	COG1238, COG1238, Predicted membrane protein [Function unknown].	3.52611e-20
NZ_CP054012.1|WP_036630133.1|4169735_4171769_+|transglutaminase-domain-containing-protein	gnl|CDD|376628	pfam01841, Transglut_core, Transglutaminase-like superfamily. This family includes animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterized transglutaminase, the human blood clotting factor XIIIa'. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase, it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease.	0.000984779
NZ_CP054012.1|WP_005863591.1|4143546_4144818_+|phosphoribosylamine--glycine-ligase	gnl|CDD|234856	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional.	0
NZ_CP054012.1|WP_005860231.1|4138748_4139648_+|serine-acetyltransferase	gnl|CDD|200082	TIGR01172, Serine_acetyltransferase, serine O-acetyltransferase. Cysteine biosynthesis [Amino acid biosynthesis, Serine family].	9.1315e-54
NZ_CP054012.1|WP_036630645.1|4165418_4165985_+|RNA-polymerase-sigma-70-factor	gnl|CDD|274376	TIGR02985, Sig70_bacteroi1, RNA polymerase sigma-70 factor, Bacteroides expansion family 1. This group of sigma factors are members of the sigma-70 family (TIGR02937) and are found primarily in the genus Bacteroides. This family appears to have resulted from a lineage-specific expansion as B. thetaiotaomicron VPI-5482, Bacteroides forsythus ATCC 43037, Bacteroides fragilis YCH46 and Bacteroides fragilis NCTC 9343 contain 25, 12, 24 and 23 members, respectively. There are currentlyonly two known members of this family outside of the Bacteroides, in Rhodopseudomonas and Bradyrhizobium.	2.78013e-48
NZ_CP054012.1|WP_005860212.1|4149966_4154046_+|response-regulator	gnl|CDD|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.82264e-52
NZ_CP054012.1|WP_005860214.1|4148842_4149763_-|riboflavin-biosynthesis-protein-RibF	gnl|CDD|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	4.26534e-121
NZ_CP054012.1|WP_036630667.1|4141309_4143511_+|S9-family-peptidase	gnl|CDD|366374	pfam00930, DPPIV_N, Dipeptidyl peptidase IV (DPP IV) N-terminal region. This family is an alignment of the region to the N-terminal side of the active site. The Prosite motif does not correspond to this Pfam entry.	1.01417e-78
NZ_CP054012.1|WP_005860218.1|4146507_4147782_-|polysaccharide-biosynthesis-C-terminal-domain-containing-protein	gnl|CDD|240533	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins. Escherichia coli Wzx and related proteins from other gram-negative bacteria are thought to act as flippases, assisting in the membrane translocation of lipopolysaccharides including those containing O-antigens. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR).	7.87692e-20

Protein sequences

>NZ_CP054012.1|WP_005860212.1|4149966_4154046_+|response-regulator
MILSWGILGSGLAAEDILFNRLGVQDGLSSNEITCILKDRKGFMWLGTTSGVNRFDGYEFKHYKYKESGLPFREEHVSELQETADGRIWITYNTNQLCVYEPGNDRFIPEKEILDSLRLENPPAKIFVDNDKQLYFATYTNEFCRYDQARGKIYSYPLNKEDGRVCDMSDVGDRLYVVHTSGVVEGIDKASGESVYRDEYLTQYANAQLFYVFADSDGDLWFFLNPGYSRGLFRLNPKSKEWKHYTTETSVALSSIMVRDVAEDMNGNIWIATDHGGINILDKRLNRMRYIRNNPFNQTSLSQNSVICLYRDDTGIMWAGTYKNGINYYHESIFKFQTIRYPLELMRDIFNNDFNCIVEDKEGDLWIGTSGNGLLRYDRETGEYVRYRAGRESENAISGDVVISMAKDLDGKLWLGTYMEGLTGFDGKRFKHYRDIPGSKDGLSNNSVYSLYVDAKNRLWIGTLEGGLDCLDQSTGKWTYYRMGDKENAINSDIVYSLSGDEKGNIVVGTSLGVNWINPETGAVTSFNGTKDGRSVFEDQIINVVFCDSRQWVWIGSNHGLHIYDRLNDKMYRLNHSSGLPDNSIMSILEDKYHTVWVGTKNGLLNIVPNRDTDNNYTFDWNSYDENEGVQGRVFNVNSACGLETGELAFGGTNGLTFVDPARIRYNSYAPPAVITGLMVNNVPITAREAYDGHVILDKDITCTKQLKLNYTERNFSFTISSCCYFLPLKNKYAFKMEGFDSEWTTVSALERRITYTNLNPGTYTFKVKAMNNDRIWSKEITSLQITILPPFWATGWAIALYIIAGILLAYGVIRFIFRIQQKKLEEEQERATVRQQHEVDEMKLRFFTNVSHEFRTPLTLIMTPLEKLMKTEKDMESQQILKLIYRNADRLLKLVNQLLDFRKIDMQGDSLVLSTGDIVPFVRDVAYSFKELSEQKRIHFSFSSVFTSLPMKFDTDKVFKIVSNLLSNAFKFTPEGGTISVTLRLRLEKEGENKLVIEVSDSGIGIPADKQGAIFDRFYQVASPDKGNPVVGTGIGLHLCREFVRMHHGTITVKSEPGAGSTFTVTLPVIPLDNQDIISAPEGIAEGDILPPVEEHPEIADKDASPAERPTLLVVDDNTDFREFMKLSLSGVYSVLTAADGEDAWKLIPEELPDMVISDVMMPITDGITLCRRIKGDIRTSHIPVILLTAKSAKDSQLVGLEAGADDYISKPFNMEMLLLKVRHLIEMKKKMQKAFMQSSTMGIALTEVQASSMDEELMRKAIGYIEEQIANPELSVERLSREMGMSRVNFYKKCLSITGKTPVELIRTVRLKRAAQLLEKSQMRVNEVALECGFNDVKLFRKYFKDEFGRLPSDYHK
>NZ_CP054012.1|WP_005860214.1|4148842_4149763_-|riboflavin-biosynthesis-protein-RibF
MIVVRDFDRLKGKELVATIGFFDGVHLGHRFLIDEMKEIAKARNLPSAVITFPEHPRAVLHADYQPKLLNSFEEKLQQLETTGVDYCIVLDFTIELSRLSAKEFITSILAKSLHVKTLLIGYDHRFGHDRTDGFEQYVVYGTECGIEVLKASPYDEGNTAVSSSEIRKLLQAGNVAEAAYLLTYPYQLLGHIVSGYKVGRTLGFPTANIRVDEPFKVIPGIGVYAVWVEVEGERYKGMLYIGDRPTLNNGKDISMEVNILDFSGDIYNDSIRVSFVQYVRGDIKFDSLEELKAQLEKDRCTVNNLL
>NZ_CP054012.1|WP_005860216.1|4147785_4148841_-|M20-family-metallo-hydrolase
MERYYEAIDLLKGMISRPSFSRDETAVADFLQAEWQKAGQKVFRKGNNLWIIAPDFDFGKPTLLLNSHIDTVKPASGWTKDPFTPEETEDDQLYGLGSNDAGASVVSLYEAFCILSEKEQPYNLIFLASCEEEVSGKNGIESALAELPPISFAVVGEPTGMQPAVAEKGLMVLDCTAIGKAGHAARNEGINAITLAMKDIEWFSTYQFPEKSDFLGPVKMTVTIIHAGTQHNVVPDKCEFTVDIRTNEFYTNEQLFELIKEKVHCEIKARSFRLSSTRTDLDHPFVRRAILMGKEPFGSPTLSDQALMRFPSVKIGPGNSARSHSADEYIKGPEIREAIDTYVRLLNGLQL
>NZ_CP054012.1|WP_005860218.1|4146507_4147782_-|polysaccharide-biosynthesis-C-terminal-domain-containing-protein
MLKKILGTIGSRYLIAFLNLALIFINAKVLGIEGVGMIGLIVASVNIAVIVNGILCGNTIVYFMNRYSMRTIFLPAYLWTPIGSSLACGFMYLTGLLPTGYRLDIFLLAILSSTVNANARFLLGKDNIKGFNLTFILQGGLLFFVLLYFYYILKRPDVRSYVWGLYVTNGIAFIASLSMLVPDFLKETSRSSGKSLYGLLKEMFAYGLWAGADGLAETCTTRLNYFLIQRFAGLGSVGLLDAGTKISESVWNISRSVSFIEYSSVAKTSEATEQKRITLQLFKLTFCALALVMGCILLVPEWIYTDYLFSAEFKGIRKVIGGLSIGIVALGCNSIISHYFIGSGKIRYSTASSCVGLIALLISGFLLIPSYGVVGSAITTSIAFTSMLVFSLTVFSRQTLTRWNEFLPDKKDFQACRIHIQKSL
>NZ_CP054012.1|WP_005860220.1|4145961_4146411_+|DedA-family-protein
MEFLIAYGYIGVFIASFLAATILPFSSEVVLTGVLLAGSAYWPCMIAATLGNFLGGMSCYWLGMLGKVEWIEKYLKLDPVKLQKVQDWIKGKGSWMGFFVFLPGIGDFIAVALGFLRANIWVVAISMFLGKAIRYWVWMEFVYRVQSMF
>NZ_CP054012.1|WP_005860222.1|4144960_4145977_+|hypothetical-protein
MARGTTSYYGRRYTIATPMTHLYMLCACIFCWIVGYVDSVGYPVYGEVTAPPLWNALCLVLPGKLFTYLIGFLLMAGGAFLVHRVNYALMLIREKTLLPFLFYALLTSTNPDFFPLKSTSVGVFCLILALYQLFTSYHDPDATDKAYNASLIISIGSLLWIHILWFLPLFWLGMYNFRTLNIRTFVASLFGILTVYWFVFGWCVWEWDFTAFTIPFTSLFKIRFLAVLGTGIIDWIQIVLVAGLTIIASLNIVTHEYEDNLRTRQFLSFLIVMAIWSFGLFFIYEQSSEEFLEMACVPASILIAHFFTVNRGKYIFWLFHFSVVMFIALLMIRIWNFL
>NZ_CP054012.1|WP_005863591.1|4143546_4144818_+|phosphoribosylamine--glycine-ligase
MNILLLGSGGREHAIAWKIAQSPKVDKLFIAPGNAGTALVGTNVDIKADDFAAIKDFALANQVNMVVVGPEDPLVKGVYDYFKKDEALSSIPVIGPSGEGAQLEGSKDFAKAFMMRHHIPTARYKSISTENLEEGYAFLESLSAPYVLKADGLAAGKGVLIIDNLEEAKKELGDMLGGMFGDASKTVVIEEFLDGIECSVFVLTDGNDYKVLPVAKDYKRIGEGNTGLNTGGMGAVSPVPFADEVFMAKVDERIIRPTVEGLKAEHIDYKGFIFLGLINVKNEPMVIEYNCRMGDPETEVVMLRIQSDLVDLLEGVAEGDLAARTLVQDPRAAVTVMLVSGGYPEAYEKNKVITGLDGVSSNNIVFHAGTKLVDGQILTNGGRVIAVSSYGATKEEALAQSFAGAKQIDFDKKYFRRDIGFDL
>NZ_CP054012.1|WP_036630667.1|4141309_4143511_+|S9-family-peptidase
MMIMRIKSSLFISLCLILLTMSITAQDKQLSLHDLIPGGKTYSRFVPRDLKQLRWCGDEYLYVKGDSVLGAKPGKKEEVFFSLERLNGALTAANLQTVGSLPSFSVPYERGSVLAFTSKQHRIHYDYKKNKVVADYALKNNWANYDFCPATNNLAFTEGNNVHILSPDGRNTIVTRETQDGIVCGQAVHQREFGITKGMFWSPKGSALAFYRMDERMVTAYPLVNIDTRCATPVPHKYPMAGMKSHEVTVGVYQVATGQTVWLETGLPKEKYLTNIAWSPDEKSIYIAELNREQNEMHLVRYSALTGKKEADLFTETDRCYVEPQHPVLFLPNDPDKFIWQSEADGYNHLYLYDTTGKELRKLTGGEWVVTKVLGFSKDGNKVIFEGTAPHPVSPNMQGTGMQRYIWETDLRTGDIMNCLSWKVGVHRWLLSPSGEYAIDYVSSPSTPRDIDLVRIKDAKVISTLLSAPDPFKSYRMPRIKVGHILAADGKTRLNYRLTLPPDLDETKKYPTIVYVYGGPKVQLVTGDWQNGARGWDLYMAQRGYVMFTVDSRGSANRGHAFESVIHRNLGINEMADQVKGVEFLKSLSYVDADRIGVHGWSYGGFMTTNLMLTYPEIFKVGVAGGPVIDWSNYEIMYGERYMDRPQDNPEGYKNANLKLKAGNLKGHLLMIHGDIDPVVVWQHSLGFLKACVEADTYPDYFVYPRHEHNVTGKDRPHLHEKITRYFDDYLGN
>NZ_CP054012.1|WP_022193052.1|4139778_4141329_+|RNA-methyltransferase
MSETFEMVAKTLYGLEEILAEELLALGANDLQIGRRMVSFTGDKELLYKANFHCRTALRILKPIYHFKAKDADTVYKEVKKVEWEKYLSLDKTFAIDSVIYSEDFNHSKFVAYRTKDAIVDYFIEKFKKRPSVRVNNPDLYINIHISHNDCTLSIDSSGESLHKRGYRVDQTEAPLNEVLAAGMILKTGWKGESNFVDPMCGSGTLLIEAAMIALNIAPGIHRKEFAFQKWVDYDEELFDRIYNDESGEREFAFHCYGSDISQAAIDIALENIRSAGLMKYIDLKVKPFQQYTEAPKPGILVTNPPYGERISSRDLLGLYNMIGERLKHVFMGYKAWILSYKDECFDKIGLRPSEKIKLMNGSLECEYRCYELFEGTNKDFKKALNEDGEERPRRSEGSFERRGNDRQNFRTGRVDRPERRFAAAHSEDDEERFASIPGKRIFGEDRGEDRPVRKKFVDAPVRKPIKPKGERPVKMRYRDEDDRKKGFGDHKRDGKRPFSKPIKPIKRRGYDDYED
>NZ_CP054012.1|WP_005860231.1|4138748_4139648_+|serine-acetyltransferase
MDIQRHSSVLGDTVEKLSDEASYKQLFHAYRDEEALPSGEVLKEIIDLCRAILFPGYYGNARISKQTIRFHTGVNVETLHSLLSKQVYAGLCFADTSCVTCPEEKISAEAEAISEAFISTLPEIRGLLATDVEATFNGDPAAQNLGEVIFCYPGFRAIGNYRIAHQLYKLGVPYIPRMITEMAHSETGIDIHPGAKIGHHFSIDHGTGTVIGETSVIGNYVRIFQGVSLAGEKLPPDENGNAIRGVARHPILEDHVTVYSNSTLIGKIRIGRGATICGNVWIAEDVPAGSTVTQLKIEN
>NZ_CP054012.1|WP_022193055.1|4157230_4159759_+|DUF4982-domain-containing-protein
MNRPLAWLLGLLLTACSPAGEQVRERSSWNDDWKFALSDSVQDYSSPDSDDSTWRILSLPHDWSIEGDFSLDNPSTPGGGALPGGIGWYRKTFTLPETDRDKVIYVDFDGVYRNSEVWINGHSLGFRPNGYVSFRYDLTPYLRYGSQPNVIAVKADNSEQPNSRWYSGSGIYRNVWLVKVNPVHVDNWGTFVHDMKISSEEATFALEVRIRNSSEADREAEVSTSIYDDRNKVVTASVTTLLRVPYTPCYDTRMREASVDHQFSIPNPKLWSPDSPSLYTAVTEVKVAGKVVDRYETVFGLRTFRWDSATGFYLNDKPLKIKGVCLHHDLGCLGAAVNTRAIERQLRIMKEMGANAIRTSHNAPAPELLDLCDRMGLLVQDESFDMWERRKSPYDYARYFAEWHERDLTDEILRDRNHASVFMWSIGNEVLEQWSHADATELDLQAANLILNAGHAIDPALLKDTTLSRQSLITRHLAGIVKRLDTSRVVTAGCNEVNPANHLFRSDALDVLGFNYHERYFEPFLRNFPGKKLIVSESTSALMTRGYYEMPSDHIYIRPESWDKPFEAPEHVCSSYDNCHVPWGSTHEKTWHLVKTLPHVSGLFVWTGFDYLGEPTPYWWPSRSSFFGIVDLAGFPKDVYYMYKSEWTDEPVLHIFPHWNWKVGEPVDIWAYYNNADEVELYLNGKSLGVQQKTDSTYHVSWRVPFTPGTLRAVSRLGGKEVLVKEIHTAGEPARLVLTPDRSVIQADGSDLSFVTVDVCDIDGNRVPDATPLIRFFVEGPGEIAGTDNGDPNDPNSLRKPKRQAYYGKALVVIRNKGGQGDIHLKAIAEGLPEATVTIQAQ
>NZ_CP054012.1|WP_057319841.1|4159781_4161980_+|glycoside-hydrolase-family-3-C-terminal-domain-containing-protein
MKKIIGVIACGLFLNAAAASSQVTDKEKVQMEKRIEKLIKKMTLEEKVGLLHGNSKFYVAGVERLGIPEWSLSDGPHGVRAEINRHDWAYAGWTNDSASYFPTGTAFAAAWNPELAYRRGEVLGEEARWRKKDVLLGPGVNIIRSPLCGRNFEYMSEDPYMNSVLAVAYIKGLQSRDVACSVKHFAVNNQETNRTTVDVECSERALREIYLPAFKAAVQEGGALTVMAAYNKFRGEFCAENNYLVRKILRNEWGFDGVYVTDWGAAHSTVPSMEAGLDLEMGTLIDKYEDWYYANPLIEAVKSGKVPMSLVDEKVGDVLRVMIKTNVLDPKKRFGPGSMNTKEHQQATYDAAAEAIVLLKNQNNLLPLDFSSIKSLAVIGDNATRKHSNGGLSSEIKAVYEVTPLEALRAKWGDKVDIRFAQGYEKLSTFVEGSNNGQSSGTFSSKTQESDALLKEAVEVARTSDVALLVCGLNHDYDTESFDRLNMDIPYGQVELIQEVVKANPRTIVVMIAGSPLNMAAVDICSPAIVWAWFNGMEGGNALVDVLSGKVNPSGKMPFTTPVSLDQSPAHALGNFPGRDLKVNYEEDILVGYRWFDTKGLPVVYPFGYGLSYTTFDYSNLNTDKETYDQADTIQATFTLTNTGDREGAEVAQLYVSDPVCSVMRPVKELKGFKKVFLKPGESRRITLDIPVSSLAFYSEAQSQFVVEPGEFILQLGASASDIKQKISVEVK
>NZ_CP054012.1|WP_005860205.1|4162128_4163079_+|Dyp-type-peroxidase
MNSLQNPLNANYPQDVTQKPGENAVFIVYALKDLPDTIDKVKDVCANFSALIRSMRNRYPDMQFSCTIGFGADAWKRFFPEQGNPKELQPFEEIKGVKLTAVSTPGDLLFHIRCKQMGLCFEFASIIDQKLRGVVESIDETHGFRYRDGKAIIGFVDGTENPAVDEDPYRFAVIGDEDPEFMGGSYVFVQKYIHDMVAWNALPVEEQEKVIGRRKFNDVELSDEEKPKNAHNAVTNIGDDLKIVRANMPFAHTSKGEYGTYFIAYASTFSTTRRMLENMFVGDPVGNTDRLLDFSTPITGTLFFVPSYELLDKLGE
>NZ_CP054012.1|WP_128577285.1|4164155_4165061_+|transcriptional-regulator
MPEFITIEEAARITGFPSQEIQQWAISKKITSYVVKQGVRLVDLTNLREFISHIERMGIQKLYLQLIIQDKEEEINEIISQFDDYLFCLRSLKNISPLLKLIIAELSTFIHDKKDRLIFTEITSGAKIEDVAKRCGISYDGICRRYKVISLRLQENMGFLTEYKKTITNQDLEIERLWIENRNMEYELRRLYKKALQNGLCIESPRSLTPVPLNAAKRICQPITRLTLAPYIRKCLTTLNIETIEDILRYTLKNGLDSLLDLPGFGALGLAQLKFQLEKHKIIDKTGHSDLYQYIIREADN
>NZ_CP054012.1|WP_036630645.1|4165418_4165985_+|RNA-polymerase-sigma-70-factor
MKVDGHLLIDLKNGDEKAFETLFWKYNEHVYHFIYSLLYEKSMAEDLTQNVFLKIWEKHETIDVEQNFDAYLFTIARNLVYKETENRLLSEKLTESLQRQLSDADSLTEERIDAESLREYINSLIEELPPSRREIFRLSRHEHLSYKEIAERLSISEKTVETQLSRALRFLRDRLSSDGFLCLITLFL
>NZ_CP054012.1|WP_036630644.1|4166082_4166943_+|DUF1573-domain-containing-protein
MKPLDLIILLLTVSLSACQDKQKEAITLLVKEWQGKQILFPENIVFTRFASDTTNFVIPTSDYKVLVFVDSIGCTSCKLQLSRWKEFIRYTDSISQKNIPFLFFFQFDDQWEIHSLLIRENFDKPICLDRSDSLNQLNHFPKDIRFQVFLLDKNNKVVVIGNPVHNPNVKELYLEEISRKQPVAPIQTTVKVEKESLLLETIPLGKSKDTLFTLVNTGDQPLVIIDVTTTCGCAQALFDKHPVQPGESLHIKVGVTPENKGLFDETITVKCNTNQLIKLNIRGKTI
>NZ_CP054012.1|WP_172716824.1|4167149_4167368_+|hypothetical-protein
MKKLRVILIVIVFCLVMINILKNNIDPSLSGLALSNIEALAGEECTTHWSCWLNLDTRVCCNSGSIGCAPCD
>NZ_CP054012.1|WP_036644236.1|4167487_4168645_+|DUF4221-family-protein
MKRYNLLIILSSLIALLSCEKINYMYYLEKDSNITFDLNYDVEPYIKALFPYTDKDGHQYISFQNGFKNQIVFYDIQTKEMAFKIDLDIEGDNGVGFFLGYYIDSLDSIYLTSLQLPEIYSVNKDGKINKKIYYGKSKDGNVLNACNSLSFSYHPILKFNNNLFVLSECNRWKYPNPVSAMIDLNTGDVQELPFEYPRFNGADNKKKNAGVELYFSRCFNGDKFIYSFFYEEDIFITSIDHNIVKRVNVKSNYIDRVVMPNDYNGTLKSMCENPNYGNLLYDKYRNVYYRVCYLKTEIDNRENYMELWDFGRKIFSIIILDKNFNIIGETVFPEYTYNPNLMYIDEKGLYISENHYKNTNYDDDKLIFRLFRLCKSKEKYNDSAV
>NZ_CP054012.1|WP_036630135.1|4168655_4169717_+|hypothetical-protein
MKKYILIIIFIFIHFVSCQQNEIDPKEYFQQVVNIKANQLNADTYKLSSFGRMILFESEKCLIKENYLGESLLDKIYYTKDSILSFAQTGEGPDENIMPRLMQKKDESNVIILDIQKKQIVTKSLSKSISSIVNLEYMFLSAIQTKHGYVVSGLLDKEETNAKRYALFDCAGKYVKSFGDFPNDGNNSGGKSKTFAYQGYMVYNPVLDRLATVAASGAIFELYQIDTIPMLIKRYHDIYPIYIDDSRSGRNGIKHGKENVIGYTDIYATDHYIYTLYSGKKLDQHTNAGMLDTMLSNDILVYDWSGKCICRLVTDIRLFNICVTNDDKELIALGWDDDYHLYSFDLSKVTFTW
>NZ_CP054012.1|WP_036630133.1|4169735_4171769_+|transglutaminase-domain-containing-protein
MIVGYFFFFVVLTFCACSSNENVLLELALDKSGENRSELEAVLHHYKDNQKKEEAARFLISNMIGKQVLDSNSVKGNQVYFDAFANYRATYGPFLYDIQYAIYDSINKLYPYTKVNPRFLSDLKELSSDYLIHHIDQCFQNKERYPWCKNMDWDIFFDYVLPYTTDNCHWEHAGSYFDRKYASLRDSMYMCSYEEIGKAISDDVEQGFLNEWIIFTGKYQGLRPMTFQNIVATQMGTCLEKSTYKIAALRANGIPAALNMVPCWGNSQYPHSWVEIIGSKQSGMIYDNTQRPFLTKDDIKIDGMFWRDVYQSKIDMFPSAITVQYCRTAPKVYRYNYRIQLHSLAILSKEEIPALFKNPGLEDITDQYVVCKDIEVPLWKEKHPKEYVYLCCYDVIGWNPVCWSRAEGTKAYFPKMGVNMLYLPAYYNNGSIQPAGDAFILTSEGNLRKLLPGFERMESSATFYSKAPYRMNTALQATGTIGTRFYVCNKKDLSDRSLIYSIENPPFYVDSFRISVSQKYRYLICDFQETQPLGYFYAIAEIKVFGSDGQQFSGEWGGNEGTKGHGLDLVTDQDRVSYYQPDQFQKDQFVVLDLGEPKQIAKVEFYPRNDDNKIVTGELYELFYWEKKWISLGKQYAEDNKLIYQNIPRESIFRIHNHTRGKEHRPFTYEGGKQVWY

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP054012_3	3.10|2526410|29|NZ_CP054012|CRISPRCasFinder,PILER-CR	2526410-2526438	29	MK415404	CrAssphage FA1-2_000172F, complete genome	90877-90905	0	1.0
NZ_CP054012_3	3.10|2526410|29|NZ_CP054012|CRISPRCasFinder,PILER-CR	2526410-2526438	29	MK415403	CrAssphage ES_ALL_000190F, complete genome	91570-91598	0	1.0
NZ_CP054012_3	3.10|2526410|29|NZ_CP054012|CRISPRCasFinder,PILER-CR	2526410-2526438	29	MK415410	CrAssphage YS1-2_2437, complete genome	93218-93246	0	1.0
NZ_CP054012_3	3.10|2526410|29|NZ_CP054012|CRISPRCasFinder,PILER-CR	2526410-2526438	29	MK415399	CrAssphage apr34_000142F, complete genome	88747-88775	0	1.0
NZ_CP054012_3	3.10|2526410|29|NZ_CP054012|CRISPRCasFinder,PILER-CR	2526410-2526438	29	MK415408	CrAssphage GF1-2_000079F, complete genome	92189-92217	0	1.0
NZ_CP054012_3	3.10|2526410|29|NZ_CP054012|CRISPRCasFinder,PILER-CR	2526410-2526438	29	MW067001	CrAssphage sp. C0521BW15, complete genome	85656-85684	0	1.0
NZ_CP054012_3	3.10|2526410|29|NZ_CP054012|CRISPRCasFinder,PILER-CR	2526410-2526438	29	MW067003	CrAssphage sp. C0531BW4, complete genome	86758-86786	0	1.0
NZ_CP054012_3	3.10|2526410|29|NZ_CP054012|CRISPRCasFinder,PILER-CR	2526410-2526438	29	MK238400	CrAssphage ZA, complete genome	84680-84708	0	1.0
NZ_CP054012_3	3.10|2526410|29|NZ_CP054012|CRISPRCasFinder,PILER-CR	2526410-2526438	29	MW067000	CrAssphage sp. C0521BD4, complete genome	85656-85684	0	1.0
NZ_CP054012_3	3.10|2526410|29|NZ_CP054012|CRISPRCasFinder,PILER-CR	2526410-2526438	29	MK069403	UNVERIFIED: CrAssphage sp. O-152, partial genome	73463-73491	0	1.0
NZ_CP054012_3	3.10|2526410|29|NZ_CP054012|CRISPRCasFinder,PILER-CR	2526410-2526438	29	BK010471	TPA_asm: Uncultured crAssphage, complete genome	84553-84581	0	1.0
NZ_CP054012_3	3.10|2526410|29|NZ_CP054012|CRISPRCasFinder,PILER-CR	2526410-2526438	29	MW067002	CrAssphage sp. C0526BW15, complete genome	86676-86704	0	1.0
NZ_CP054012_3	3.10|2526410|29|NZ_CP054012|CRISPRCasFinder,PILER-CR	2526410-2526438	29	NC_024711	Uncultured crAssphage, complete genome	84553-84581	0	1.0
NZ_CP054012_3	3.10|2526410|29|NZ_CP054012|CRISPRCasFinder,PILER-CR	2526410-2526438	29	JQ995537	Uncultured phage crAssphage, complete genome	84553-84581	0	1.0
NZ_CP054012_3	3.10|2526410|29|NZ_CP054012|CRISPRCasFinder,PILER-CR	2526410-2526438	29	MT006214	CrAssphage LMMB, complete genome	85586-85614	0	1.0
NZ_CP054012_3	3.13|2526639|29|NZ_CP054012|CRISPRCasFinder,PILER-CR	2526639-2526667	29	NZ_CP036552	Bacteroides fragilis strain DCMOUH0042B plasmid pBFO42_2, complete sequence	4428-4456	0	1.0
NZ_CP054012_3	3.14|2526715|30|NZ_CP054012|CRISPRCasFinder,PILER-CR	2526715-2526744	30	NZ_CP036549	Bacteroides fragilis strain DCMSKEJBY0001B plasmid pBFS01_3, complete sequence	2654-2683	0	1.0
NZ_CP054012_3	3.14|2526715|30|NZ_CP054012|CRISPRCasFinder,PILER-CR	2526715-2526744	30	NZ_CP036541	Bacteroides fragilis strain DCMOUH0017B plasmid pBFO17_2, complete sequence	778-807	0	1.0
NZ_CP054012_3	3.14|2526715|30|NZ_CP054012|CRISPRCasFinder,PILER-CR	2526715-2526744	30	NC_011073	Bacteroides fragilis plasmid pBFP35, complete sequence	511-540	0	1.0
NZ_CP054012_3	3.14|2526715|30|NZ_CP054012|CRISPRCasFinder,PILER-CR	2526715-2526744	30	NZ_CP036552	Bacteroides fragilis strain DCMOUH0042B plasmid pBFO42_2, complete sequence	1079-1108	0	1.0
NZ_CP054012_3	3.13|2526639|29|NZ_CP054012|CRISPRCasFinder,PILER-CR	2526639-2526667	29	NZ_CP036549	Bacteroides fragilis strain DCMSKEJBY0001B plasmid pBFS01_3, complete sequence	4900-4928	1	0.966
NZ_CP054012_3	3.13|2526639|29|NZ_CP054012|CRISPRCasFinder,PILER-CR	2526639-2526667	29	NZ_CP036541	Bacteroides fragilis strain DCMOUH0017B plasmid pBFO17_2, complete sequence	3024-3052	1	0.966
NZ_CP054012_3	3.13|2526639|29|NZ_CP054012|CRISPRCasFinder,PILER-CR	2526639-2526667	29	NC_011073	Bacteroides fragilis plasmid pBFP35, complete sequence	2757-2785	1	0.966
NZ_CP054012_3	3.4|2525950|29|NZ_CP054012|CRISPRCasFinder	2525950-2525978	29	NZ_CP054002	Bacteroides fragilis strain FDAARGOS_763 plasmid unnamed2, complete sequence	25623-25651	2	0.931
NZ_CP054012_3	3.4|2525950|29|NZ_CP054012|CRISPRCasFinder	2525950-2525978	29	NZ_CP054002	Bacteroides fragilis strain FDAARGOS_763 plasmid unnamed2, complete sequence	63434-63462	2	0.931
NZ_CP054012_3	3.10|2526410|29|NZ_CP054012|CRISPRCasFinder,PILER-CR	2526410-2526438	29	MT774386	CrAssphage cr110_1, complete genome	11963-11991	2	0.931
NZ_CP054012_3	3.10|2526410|29|NZ_CP054012|CRISPRCasFinder,PILER-CR	2526410-2526438	29	MT774383	CrAssphage cr11_1, complete genome	23743-23771	2	0.931
NZ_CP054012_3	3.17|2525950|28|NZ_CP054012|PILER-CR	2525950-2525977	28	NZ_CP054002	Bacteroides fragilis strain FDAARGOS_763 plasmid unnamed2, complete sequence	25623-25650	2	0.929
NZ_CP054012_3	3.17|2525950|28|NZ_CP054012|PILER-CR	2525950-2525977	28	NZ_CP054002	Bacteroides fragilis strain FDAARGOS_763 plasmid unnamed2, complete sequence	63434-63461	2	0.929
NZ_CP054012_3	3.10|2526410|29|NZ_CP054012|CRISPRCasFinder,PILER-CR	2526410-2526438	29	MT774377	CrAssphage cr107_1, complete genome	14007-14035	3	0.897
NZ_CP054012_3	3.4|2525950|29|NZ_CP054012|CRISPRCasFinder	2525950-2525978	29	KR093654	Moraxella phage Mcat30, complete genome	9148-9176	4	0.862
NZ_CP054012_3	3.4|2525950|29|NZ_CP054012|CRISPRCasFinder	2525950-2525978	29	KR093653	Moraxella phage Mcat29, complete genome	25374-25402	4	0.862
NZ_CP054012_3	3.4|2525950|29|NZ_CP054012|CRISPRCasFinder	2525950-2525978	29	KR093656	Moraxella phage Mcat32, complete genome	21783-21811	4	0.862
NZ_CP054012_3	3.4|2525950|29|NZ_CP054012|CRISPRCasFinder	2525950-2525978	29	KR093652	Moraxella phage Mcat28, complete genome	45671-45699	4	0.862
NZ_CP054012_3	3.4|2525950|29|NZ_CP054012|CRISPRCasFinder	2525950-2525978	29	KR093655	Moraxella phage Mcat31, complete genome	21799-21827	4	0.862
NZ_CP054012_3	3.4|2525950|29|NZ_CP054012|CRISPRCasFinder	2525950-2525978	29	KR093650	Moraxella phage Mcat26, complete genome	28791-28819	4	0.862
NZ_CP054012_3	3.4|2525950|29|NZ_CP054012|CRISPRCasFinder	2525950-2525978	29	KR093649	Moraxella phage Mcat25, complete genome	32093-32121	4	0.862
NZ_CP054012_3	3.4|2525950|29|NZ_CP054012|CRISPRCasFinder	2525950-2525978	29	KR093648	Moraxella phage Mcat24, complete genome	30174-30202	4	0.862
NZ_CP054012_3	3.4|2525950|29|NZ_CP054012|CRISPRCasFinder	2525950-2525978	29	KR093651	Moraxella phage Mcat27, complete genome	32321-32349	4	0.862
NZ_CP054012_3	3.17|2525950|28|NZ_CP054012|PILER-CR	2525950-2525977	28	KR093654	Moraxella phage Mcat30, complete genome	9149-9176	4	0.857
NZ_CP054012_3	3.17|2525950|28|NZ_CP054012|PILER-CR	2525950-2525977	28	KR093653	Moraxella phage Mcat29, complete genome	25374-25401	4	0.857
NZ_CP054012_3	3.17|2525950|28|NZ_CP054012|PILER-CR	2525950-2525977	28	KR093656	Moraxella phage Mcat32, complete genome	21783-21810	4	0.857
NZ_CP054012_3	3.17|2525950|28|NZ_CP054012|PILER-CR	2525950-2525977	28	KR093652	Moraxella phage Mcat28, complete genome	45671-45698	4	0.857
NZ_CP054012_3	3.17|2525950|28|NZ_CP054012|PILER-CR	2525950-2525977	28	KR093655	Moraxella phage Mcat31, complete genome	21799-21826	4	0.857
NZ_CP054012_3	3.17|2525950|28|NZ_CP054012|PILER-CR	2525950-2525977	28	KR093650	Moraxella phage Mcat26, complete genome	28791-28818	4	0.857
NZ_CP054012_3	3.17|2525950|28|NZ_CP054012|PILER-CR	2525950-2525977	28	KR093649	Moraxella phage Mcat25, complete genome	32093-32120	4	0.857
NZ_CP054012_3	3.17|2525950|28|NZ_CP054012|PILER-CR	2525950-2525977	28	KR093648	Moraxella phage Mcat24, complete genome	30174-30201	4	0.857
NZ_CP054012_3	3.17|2525950|28|NZ_CP054012|PILER-CR	2525950-2525977	28	KR093651	Moraxella phage Mcat27, complete genome	32321-32348	4	0.857
NZ_CP054012_3	3.10|2526410|29|NZ_CP054012|CRISPRCasFinder,PILER-CR	2526410-2526438	29	MH616963	CrAssphage sp. isolate ctbg_1, complete genome	13836-13864	5	0.828
NZ_CP054012_3	3.10|2526410|29|NZ_CP054012|CRISPRCasFinder,PILER-CR	2526410-2526438	29	MT774384	CrAssphage cr8_1, complete genome	52048-52076	5	0.828
NZ_CP054012_3	3.6|2526102|30|NZ_CP054012|CRISPRCasFinder	2526102-2526131	30	NZ_CP050074	Enterobacter kobei strain 070 plasmid p070, complete sequence	47760-47789	6	0.8
NZ_CP054012_3	3.6|2526102|30|NZ_CP054012|CRISPRCasFinder	2526102-2526131	30	NZ_CP035216	Klebsiella michiganensis strain M82255 plasmid pKOCBH-B, complete sequence	198075-198104	6	0.8
NZ_CP054012_3	3.6|2526102|30|NZ_CP054012|CRISPRCasFinder	2526102-2526131	30	NZ_CP026272	Klebsiella oxytoca strain KONIH4 plasmid pKPC-f607, complete sequence	131576-131605	6	0.8
NZ_CP054012_3	3.6|2526102|30|NZ_CP054012|CRISPRCasFinder	2526102-2526131	30	NZ_CP026182	Klebsiella pneumoniae strain KPNIH49 plasmid pKPN-0c4e, complete sequence	51560-51589	6	0.8
NZ_CP054012_3	3.6|2526102|30|NZ_CP054012|CRISPRCasFinder	2526102-2526131	30	NZ_CP011587	Enterobacter asburiae strain CAV1043 plasmid pCAV1043-51, complete sequence	21595-21624	6	0.8
NZ_CP054012_3	3.6|2526102|30|NZ_CP054012|CRISPRCasFinder	2526102-2526131	30	NZ_CP041248	Raoultella electrica strain DSM 102253 plasmid unnamed1, complete sequence	168669-168698	6	0.8
NZ_CP054012_3	3.6|2526102|30|NZ_CP054012|CRISPRCasFinder	2526102-2526131	30	NZ_CP011633	Klebsiella oxytoca strain CAV1374 plasmid pCAV1374-150, complete sequence	97704-97733	6	0.8
NZ_CP054012_3	3.6|2526102|30|NZ_CP054012|CRISPRCasFinder	2526102-2526131	30	MT219824	Escherichia coli strain RT18-1 plasmid pRT18-1_294k_tetX, complete sequence	12801-12830	6	0.8
NZ_CP054012_3	3.6|2526102|30|NZ_CP054012|CRISPRCasFinder	2526102-2526131	30	NZ_CP048383	Citrobacter freundii strain 62 plasmid p6_A, complete sequence	197664-197693	6	0.8
NZ_CP054012_3	3.6|2526102|30|NZ_CP054012|CRISPRCasFinder	2526102-2526131	30	NZ_CP026282	Klebsiella oxytoca strain KONIH2 plasmid pKOR-e3cb, complete sequence	128154-128183	6	0.8
NZ_CP054012_3	3.6|2526102|30|NZ_CP054012|CRISPRCasFinder	2526102-2526131	30	NZ_CP010166	Escherichia coli strain H2 plasmid C, complete sequence	6348-6377	6	0.8
NZ_CP054012_3	3.6|2526102|30|NZ_CP054012|CRISPRCasFinder	2526102-2526131	30	NZ_CP048352	Raoultella ornithinolytica strain 23 plasmid p23_C, complete sequence	14210-14239	6	0.8
NZ_CP054012_3	3.6|2526102|30|NZ_CP054012|CRISPRCasFinder	2526102-2526131	30	NZ_CP029729	Citrobacter sp. CRE-46 strain AR_0157 plasmid unnamed1, complete sequence	181220-181249	6	0.8
NZ_CP054012_3	3.6|2526102|30|NZ_CP054012|CRISPRCasFinder	2526102-2526131	30	NZ_CP026237	Citrobacter freundii complex sp. CFNIH3 plasmid pCFR-9161, complete sequence	190875-190904	6	0.8
NZ_CP054012_3	3.6|2526102|30|NZ_CP054012|CRISPRCasFinder	2526102-2526131	30	NZ_CP026206	Escherichia coli strain ECONIH5 plasmid pECO-cbb3, complete sequence	8707-8736	6	0.8
NZ_CP054012_3	3.6|2526102|30|NZ_CP054012|CRISPRCasFinder	2526102-2526131	30	MG516909	Escherichia coli plasmid pEc1675, complete sequence	145923-145952	6	0.8
NZ_CP054012_3	3.6|2526102|30|NZ_CP054012|CRISPRCasFinder	2526102-2526131	30	NZ_CP026404	Escherichia coli strain ECONIH4 plasmid pECO-6357, complete sequence	111725-111754	6	0.8
NZ_CP054012_3	3.6|2526102|30|NZ_CP054012|CRISPRCasFinder	2526102-2526131	30	NZ_CP026058	Citrobacter freundii strain FDAARGOS_73 plasmid unnamed2, complete sequence	251554-251583	6	0.8
NZ_CP054012_3	3.6|2526102|30|NZ_CP054012|CRISPRCasFinder	2526102-2526131	30	NZ_CP022155	Escherichia coli strain ABWA45 plasmid pABWA45_1, complete sequence	54713-54742	6	0.8
NZ_CP054012_3	3.6|2526102|30|NZ_CP054012|CRISPRCasFinder	2526102-2526131	30	NZ_CP026234	Citrobacter freundii complex sp. CFNIH4 plasmid pCFR-4109, complete sequence	170584-170613	6	0.8
NZ_CP054012_3	3.12|2526563|29|NZ_CP054012|CRISPRCasFinder,PILER-CR	2526563-2526591	29	MN693120	Marine virus AFVG_25M98, complete genome	26462-26490	7	0.759
NZ_CP054012_3	3.13|2526639|29|NZ_CP054012|CRISPRCasFinder,PILER-CR	2526639-2526667	29	NZ_AP019726	Bacteroides uniformis strain NBRC 113350 plasmid pBUN2, complete sequence	89700-89728	7	0.759
NZ_CP054012_3	3.14|2526715|30|NZ_CP054012|CRISPRCasFinder,PILER-CR	2526715-2526744	30	MN693944	Marine virus AFVG_250M270, complete genome	5823-5852	7	0.767
NZ_CP054012_2	2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT	1784326-1784359	34	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	5069816-5069849	8	0.765
NZ_CP054012_3	3.10|2526410|29|NZ_CP054012|CRISPRCasFinder,PILER-CR	2526410-2526438	29	NZ_CP053834	Arcobacter cloacae strain LMG 26153 plasmid pACLO, complete sequence	22142-22170	8	0.724
NZ_CP054012_2	2.1|1784056|33|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT	1784056-1784088	33	MK448824	Streptococcus phage Javan637, complete genome	16293-16325	9	0.727
NZ_CP054012_2	2.1|1784056|33|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT	1784056-1784088	33	MK448965	Streptococcus phage Javan506, complete genome	15418-15450	9	0.727
NZ_CP054012_2	2.1|1784056|33|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT	1784056-1784088	33	MK448959	Streptococcus phage Javan488, complete genome	15418-15450	9	0.727
NZ_CP054012_2	2.1|1784056|33|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT	1784056-1784088	33	MK448949	Streptococcus phage Javan460, complete genome	16078-16110	9	0.727
NZ_CP054012_2	2.1|1784056|33|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT	1784056-1784088	33	MK449002	Streptococcus phage Javan642, complete genome	16248-16280	9	0.727
NZ_CP054012_2	2.1|1784056|33|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT	1784056-1784088	33	MK448694	Streptococcus phage Javan179, complete genome	17832-17864	9	0.727
NZ_CP054012_2	2.1|1784056|33|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT	1784056-1784088	33	MK449003	Streptococcus phage Javan648, complete genome	16248-16280	9	0.727
NZ_CP054012_2	2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT	1784326-1784359	34	NZ_CP049790	Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence	1170629-1170662	9	0.735
NZ_CP054012_2	2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT	1784326-1784359	34	NZ_CP016915	Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence	1766112-1766145	9	0.735
NZ_CP054012_2	2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT	1784326-1784359	34	CP023015	Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence	1128926-1128959	9	0.735
NZ_CP054012_2	2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT	1784326-1784359	34	NZ_CP052129	Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence	1217946-1217979	9	0.735
NZ_CP054012_2	2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT	1784326-1784359	34	NZ_CP052111	Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence	1131736-1131769	9	0.735
NZ_CP054012_2	2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT	1784326-1784359	34	NZ_CP052113	Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence	1131736-1131769	9	0.735
NZ_CP054012_2	2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT	1784326-1784359	34	CP023013	Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence	858197-858230	9	0.735
NZ_CP054012_2	2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT	1784326-1784359	34	NZ_CP049794	Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence	1501216-1501249	9	0.735
NZ_CP054012_2	2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT	1784326-1784359	34	NZ_CP049788	Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence	772295-772328	9	0.735
NZ_CP054012_2	2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT	1784326-1784359	34	NZ_CP021763	Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence	949166-949199	9	0.735
NZ_CP054012_2	2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT	1784326-1784359	34	NZ_CP015116	Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence	1123414-1123447	9	0.735
NZ_CP054012_2	2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT	1784326-1784359	34	NZ_CP049792	Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence	1276377-1276410	9	0.735
NZ_CP054012_2	2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT	1784326-1784359	34	NZ_CP022783	Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence	861748-861781	9	0.735
NZ_CP054012_2	2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT	1784326-1784359	34	NZ_CP022795	Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence	860350-860383	9	0.735
NZ_CP054012_2	2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT	1784326-1784359	34	NZ_CP009763	Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence	856492-856525	9	0.735
NZ_CP054012_2	2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT	1784326-1784359	34	NZ_CP052085	Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence	926070-926103	9	0.735
NZ_CP054012_2	2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT	1784326-1784359	34	NZ_CP052095	Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence	967212-967245	9	0.735
NZ_CP054012_2	2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT	1784326-1784359	34	NZ_CP021765	Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence	949208-949241	9	0.735
NZ_CP054012_2	2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT	1784326-1784359	34	NZ_CP052087	Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence	926070-926103	9	0.735
NZ_CP054012_2	2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT	1784326-1784359	34	NZ_CP052097	Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence	967212-967245	9	0.735
NZ_CP054012_2	2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT	1784326-1784359	34	NZ_CP052127	Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence	926070-926103	9	0.735
NZ_CP054012_2	2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT	1784326-1784359	34	NZ_CP052089	Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence	926074-926107	9	0.735
NZ_CP054012_2	2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT	1784326-1784359	34	NZ_CP052093	Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence	967212-967245	9	0.735
NZ_CP054012_2	2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT	1784326-1784359	34	NZ_CP052101	Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence	967212-967245	9	0.735
NZ_CP054012_2	2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT	1784326-1784359	34	NZ_CP052099	Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence	967212-967245	9	0.735
NZ_CP054012_2	2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT	1784326-1784359	34	NZ_CP052131	Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence	926070-926103	9	0.735
NZ_CP054012_2	2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT	1784326-1784359	34	NZ_CP052091	Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence	967214-967247	9	0.735
NZ_CP054012_3	3.14|2526715|30|NZ_CP054012|CRISPRCasFinder,PILER-CR	2526715-2526744	30	MK448709	Streptococcus phage Javan231, complete genome	4067-4096	9	0.7
NZ_CP054012_3	3.14|2526715|30|NZ_CP054012|CRISPRCasFinder,PILER-CR	2526715-2526744	30	MK448710	Streptococcus phage Javan233, complete genome	4067-4096	9	0.7
NZ_CP054012_3	3.14|2526715|30|NZ_CP054012|CRISPRCasFinder,PILER-CR	2526715-2526744	30	MK448721	Streptococcus phage Javan263, complete genome	5145-5174	9	0.7
NZ_CP054012_2	2.1|1784056|33|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT	1784056-1784088	33	MK448681	Streptococcus phage Javan141, complete genome	12552-12584	10	0.697
NZ_CP054012_2	2.1|1784056|33|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT	1784056-1784088	33	MK448672	Streptococcus phage Javan117, complete genome	12519-12551	10	0.697
NZ_CP054012_2	2.1|1784056|33|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT	1784056-1784088	33	MK448849	Streptococcus phage Javan128, complete genome	11903-11935	10	0.697
NZ_CP054012_2	2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT	1784326-1784359	34	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	1721486-1721519	10	0.706
NZ_CP054012_2	2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT	1784326-1784359	34	NZ_CP023071	Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence	1701462-1701495	10	0.706
NZ_CP054012_2	2.4|1784257|37|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT	1784257-1784293	37	KF598856	Staphylococcus phage YMC/09/04/R1988, complete genome	25621-25657	11	0.703

1. spacer 3.10|2526410|29|NZ_CP054012|CRISPRCasFinder,PILER-CR matches to MK415404 (CrAssphage FA1-2_000172F, complete genome) position: , mismatch: 0, identity: 1.0

ttcattagaataacctctatcttcataac	CRISPR spacer
ttcattagaataacctctatcttcataac	Protospacer
*****************************

2. spacer 3.10|2526410|29|NZ_CP054012|CRISPRCasFinder,PILER-CR matches to MK415403 (CrAssphage ES_ALL_000190F, complete genome) position: , mismatch: 0, identity: 1.0

ttcattagaataacctctatcttcataac	CRISPR spacer
ttcattagaataacctctatcttcataac	Protospacer
*****************************

3. spacer 3.10|2526410|29|NZ_CP054012|CRISPRCasFinder,PILER-CR matches to MK415410 (CrAssphage YS1-2_2437, complete genome) position: , mismatch: 0, identity: 1.0

ttcattagaataacctctatcttcataac	CRISPR spacer
ttcattagaataacctctatcttcataac	Protospacer
*****************************

4. spacer 3.10|2526410|29|NZ_CP054012|CRISPRCasFinder,PILER-CR matches to MK415399 (CrAssphage apr34_000142F, complete genome) position: , mismatch: 0, identity: 1.0

ttcattagaataacctctatcttcataac	CRISPR spacer
ttcattagaataacctctatcttcataac	Protospacer
*****************************

5. spacer 3.10|2526410|29|NZ_CP054012|CRISPRCasFinder,PILER-CR matches to MK415408 (CrAssphage GF1-2_000079F, complete genome) position: , mismatch: 0, identity: 1.0

ttcattagaataacctctatcttcataac	CRISPR spacer
ttcattagaataacctctatcttcataac	Protospacer
*****************************

6. spacer 3.10|2526410|29|NZ_CP054012|CRISPRCasFinder,PILER-CR matches to MW067001 (CrAssphage sp. C0521BW15, complete genome) position: , mismatch: 0, identity: 1.0

ttcattagaataacctctatcttcataac	CRISPR spacer
ttcattagaataacctctatcttcataac	Protospacer
*****************************

7. spacer 3.10|2526410|29|NZ_CP054012|CRISPRCasFinder,PILER-CR matches to MW067003 (CrAssphage sp. C0531BW4, complete genome) position: , mismatch: 0, identity: 1.0

ttcattagaataacctctatcttcataac	CRISPR spacer
ttcattagaataacctctatcttcataac	Protospacer
*****************************

8. spacer 3.10|2526410|29|NZ_CP054012|CRISPRCasFinder,PILER-CR matches to MK238400 (CrAssphage ZA, complete genome) position: , mismatch: 0, identity: 1.0

ttcattagaataacctctatcttcataac	CRISPR spacer
ttcattagaataacctctatcttcataac	Protospacer
*****************************

9. spacer 3.10|2526410|29|NZ_CP054012|CRISPRCasFinder,PILER-CR matches to MW067000 (CrAssphage sp. C0521BD4, complete genome) position: , mismatch: 0, identity: 1.0

ttcattagaataacctctatcttcataac	CRISPR spacer
ttcattagaataacctctatcttcataac	Protospacer
*****************************

10. spacer 3.10|2526410|29|NZ_CP054012|CRISPRCasFinder,PILER-CR matches to MK069403 (UNVERIFIED: CrAssphage sp. O-152, partial genome) position: , mismatch: 0, identity: 1.0

ttcattagaataacctctatcttcataac	CRISPR spacer
ttcattagaataacctctatcttcataac	Protospacer
*****************************

11. spacer 3.10|2526410|29|NZ_CP054012|CRISPRCasFinder,PILER-CR matches to BK010471 (TPA_asm: Uncultured crAssphage, complete genome) position: , mismatch: 0, identity: 1.0

ttcattagaataacctctatcttcataac	CRISPR spacer
ttcattagaataacctctatcttcataac	Protospacer
*****************************

12. spacer 3.10|2526410|29|NZ_CP054012|CRISPRCasFinder,PILER-CR matches to MW067002 (CrAssphage sp. C0526BW15, complete genome) position: , mismatch: 0, identity: 1.0

ttcattagaataacctctatcttcataac	CRISPR spacer
ttcattagaataacctctatcttcataac	Protospacer
*****************************

13. spacer 3.10|2526410|29|NZ_CP054012|CRISPRCasFinder,PILER-CR matches to NC_024711 (Uncultured crAssphage, complete genome) position: , mismatch: 0, identity: 1.0

ttcattagaataacctctatcttcataac	CRISPR spacer
ttcattagaataacctctatcttcataac	Protospacer
*****************************

14. spacer 3.10|2526410|29|NZ_CP054012|CRISPRCasFinder,PILER-CR matches to JQ995537 (Uncultured phage crAssphage, complete genome) position: , mismatch: 0, identity: 1.0

ttcattagaataacctctatcttcataac	CRISPR spacer
ttcattagaataacctctatcttcataac	Protospacer
*****************************

15. spacer 3.10|2526410|29|NZ_CP054012|CRISPRCasFinder,PILER-CR matches to MT006214 (CrAssphage LMMB, complete genome) position: , mismatch: 0, identity: 1.0

ttcattagaataacctctatcttcataac	CRISPR spacer
ttcattagaataacctctatcttcataac	Protospacer
*****************************

16. spacer 3.13|2526639|29|NZ_CP054012|CRISPRCasFinder,PILER-CR matches to NZ_CP036552 (Bacteroides fragilis strain DCMOUH0042B plasmid pBFO42_2, complete sequence) position: , mismatch: 0, identity: 1.0

cagaacatttgctgaaatacttcacgtaa	CRISPR spacer
cagaacatttgctgaaatacttcacgtaa	Protospacer
*****************************

17. spacer 3.14|2526715|30|NZ_CP054012|CRISPRCasFinder,PILER-CR matches to NZ_CP036549 (Bacteroides fragilis strain DCMSKEJBY0001B plasmid pBFS01_3, complete sequence) position: , mismatch: 0, identity: 1.0

tgagaagtgcaattcaaattaaatcccgtt	CRISPR spacer
tgagaagtgcaattcaaattaaatcccgtt	Protospacer
******************************

18. spacer 3.14|2526715|30|NZ_CP054012|CRISPRCasFinder,PILER-CR matches to NZ_CP036541 (Bacteroides fragilis strain DCMOUH0017B plasmid pBFO17_2, complete sequence) position: , mismatch: 0, identity: 1.0

tgagaagtgcaattcaaattaaatcccgtt	CRISPR spacer
tgagaagtgcaattcaaattaaatcccgtt	Protospacer
******************************

19. spacer 3.14|2526715|30|NZ_CP054012|CRISPRCasFinder,PILER-CR matches to NC_011073 (Bacteroides fragilis plasmid pBFP35, complete sequence) position: , mismatch: 0, identity: 1.0

tgagaagtgcaattcaaattaaatcccgtt	CRISPR spacer
tgagaagtgcaattcaaattaaatcccgtt	Protospacer
******************************

20. spacer 3.14|2526715|30|NZ_CP054012|CRISPRCasFinder,PILER-CR matches to NZ_CP036552 (Bacteroides fragilis strain DCMOUH0042B plasmid pBFO42_2, complete sequence) position: , mismatch: 0, identity: 1.0

tgagaagtgcaattcaaattaaatcccgtt	CRISPR spacer
tgagaagtgcaattcaaattaaatcccgtt	Protospacer
******************************

21. spacer 3.13|2526639|29|NZ_CP054012|CRISPRCasFinder,PILER-CR matches to NZ_CP036549 (Bacteroides fragilis strain DCMSKEJBY0001B plasmid pBFS01_3, complete sequence) position: , mismatch: 1, identity: 0.966

cagaacatttgctgaaatacttcacgtaa	CRISPR spacer
cagaacatttgctgaaacacttcacgtaa	Protospacer
*****************.***********

22. spacer 3.13|2526639|29|NZ_CP054012|CRISPRCasFinder,PILER-CR matches to NZ_CP036541 (Bacteroides fragilis strain DCMOUH0017B plasmid pBFO17_2, complete sequence) position: , mismatch: 1, identity: 0.966

cagaacatttgctgaaatacttcacgtaa	CRISPR spacer
cagaacatttgctgaaacacttcacgtaa	Protospacer
*****************.***********

23. spacer 3.13|2526639|29|NZ_CP054012|CRISPRCasFinder,PILER-CR matches to NC_011073 (Bacteroides fragilis plasmid pBFP35, complete sequence) position: , mismatch: 1, identity: 0.966

cagaacatttgctgaaatacttcacgtaa	CRISPR spacer
cagaacatttgctgaaacacttcacgtaa	Protospacer
*****************.***********

24. spacer 3.4|2525950|29|NZ_CP054012|CRISPRCasFinder matches to NZ_CP054002 (Bacteroides fragilis strain FDAARGOS_763 plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.931

gtaacctagactttcacgtttagacaaga	CRISPR spacer
gtaacctagactttctcgtttagataaga	Protospacer
*************** ********.****

25. spacer 3.4|2525950|29|NZ_CP054012|CRISPRCasFinder matches to NZ_CP054002 (Bacteroides fragilis strain FDAARGOS_763 plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.931

gtaacctagactttcacgtttagacaaga	CRISPR spacer
gtaacctagactttctcgtttagataaga	Protospacer
*************** ********.****

26. spacer 3.10|2526410|29|NZ_CP054012|CRISPRCasFinder,PILER-CR matches to MT774386 (CrAssphage cr110_1, complete genome) position: , mismatch: 2, identity: 0.931

ttcattagaataacctctatcttcataac	CRISPR spacer
ttcattagagtaacctctatcatcataac	Protospacer
*********.*********** *******

27. spacer 3.10|2526410|29|NZ_CP054012|CRISPRCasFinder,PILER-CR matches to MT774383 (CrAssphage cr11_1, complete genome) position: , mismatch: 2, identity: 0.931

ttcattagaataacctctatcttcataac	CRISPR spacer
ttcattagagtaacctctatcatcataac	Protospacer
*********.*********** *******

28. spacer 3.17|2525950|28|NZ_CP054012|PILER-CR matches to NZ_CP054002 (Bacteroides fragilis strain FDAARGOS_763 plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.929

gtaacctagactttcacgtttagacaag	CRISPR spacer
gtaacctagactttctcgtttagataag	Protospacer
*************** ********.***

29. spacer 3.17|2525950|28|NZ_CP054012|PILER-CR matches to NZ_CP054002 (Bacteroides fragilis strain FDAARGOS_763 plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.929

gtaacctagactttcacgtttagacaag	CRISPR spacer
gtaacctagactttctcgtttagataag	Protospacer
*************** ********.***

30. spacer 3.10|2526410|29|NZ_CP054012|CRISPRCasFinder,PILER-CR matches to MT774377 (CrAssphage cr107_1, complete genome) position: , mismatch: 3, identity: 0.897

ttcattagaataacctctatcttcataac	CRISPR spacer
ttcattagaataacctctgtcatcatatc	Protospacer
******************.** ***** *

31. spacer 3.4|2525950|29|NZ_CP054012|CRISPRCasFinder matches to KR093654 (Moraxella phage Mcat30, complete genome) position: , mismatch: 4, identity: 0.862

gtaacctagactttcacgtttagacaaga	CRISPR spacer
gtaacctagactttcaagtttagccacaa	Protospacer
**************** ****** ** .*

32. spacer 3.4|2525950|29|NZ_CP054012|CRISPRCasFinder matches to KR093653 (Moraxella phage Mcat29, complete genome) position: , mismatch: 4, identity: 0.862

gtaacctagactttcacgtttagacaaga	CRISPR spacer
gtaacctagactttcaagtttagccacaa	Protospacer
**************** ****** ** .*

33. spacer 3.4|2525950|29|NZ_CP054012|CRISPRCasFinder matches to KR093656 (Moraxella phage Mcat32, complete genome) position: , mismatch: 4, identity: 0.862

gtaacctagactttcacgtttagacaaga	CRISPR spacer
gtaacctagactttcaagtttagccacaa	Protospacer
**************** ****** ** .*

34. spacer 3.4|2525950|29|NZ_CP054012|CRISPRCasFinder matches to KR093652 (Moraxella phage Mcat28, complete genome) position: , mismatch: 4, identity: 0.862

gtaacctagactttcacgtttagacaaga	CRISPR spacer
gtaacctagactttcaagtttagccacaa	Protospacer
**************** ****** ** .*

35. spacer 3.4|2525950|29|NZ_CP054012|CRISPRCasFinder matches to KR093655 (Moraxella phage Mcat31, complete genome) position: , mismatch: 4, identity: 0.862

gtaacctagactttcacgtttagacaaga	CRISPR spacer
gtaacctagactttcaagtttagccacaa	Protospacer
**************** ****** ** .*

36. spacer 3.4|2525950|29|NZ_CP054012|CRISPRCasFinder matches to KR093650 (Moraxella phage Mcat26, complete genome) position: , mismatch: 4, identity: 0.862

gtaacctagactttcacgtttagacaaga	CRISPR spacer
gtaacctagactttcaagtttagccacaa	Protospacer
**************** ****** ** .*

37. spacer 3.4|2525950|29|NZ_CP054012|CRISPRCasFinder matches to KR093649 (Moraxella phage Mcat25, complete genome) position: , mismatch: 4, identity: 0.862

gtaacctagactttcacgtttagacaaga	CRISPR spacer
gtaacctagactttcaagtttagccacaa	Protospacer
**************** ****** ** .*

38. spacer 3.4|2525950|29|NZ_CP054012|CRISPRCasFinder matches to KR093648 (Moraxella phage Mcat24, complete genome) position: , mismatch: 4, identity: 0.862

gtaacctagactttcacgtttagacaaga	CRISPR spacer
gtaacctagactttcaagtttagccacaa	Protospacer
**************** ****** ** .*

39. spacer 3.4|2525950|29|NZ_CP054012|CRISPRCasFinder matches to KR093651 (Moraxella phage Mcat27, complete genome) position: , mismatch: 4, identity: 0.862

gtaacctagactttcacgtttagacaaga	CRISPR spacer
gtaacctagactttcaagtttagccacaa	Protospacer
**************** ****** ** .*

40. spacer 3.17|2525950|28|NZ_CP054012|PILER-CR matches to KR093654 (Moraxella phage Mcat30, complete genome) position: , mismatch: 4, identity: 0.857

gtaacctagactttcacgtttagacaag	CRISPR spacer
gtaacctagactttcaagtttagccaca	Protospacer
**************** ****** ** .

41. spacer 3.17|2525950|28|NZ_CP054012|PILER-CR matches to KR093653 (Moraxella phage Mcat29, complete genome) position: , mismatch: 4, identity: 0.857

gtaacctagactttcacgtttagacaag	CRISPR spacer
gtaacctagactttcaagtttagccaca	Protospacer
**************** ****** ** .

42. spacer 3.17|2525950|28|NZ_CP054012|PILER-CR matches to KR093656 (Moraxella phage Mcat32, complete genome) position: , mismatch: 4, identity: 0.857

gtaacctagactttcacgtttagacaag	CRISPR spacer
gtaacctagactttcaagtttagccaca	Protospacer
**************** ****** ** .

43. spacer 3.17|2525950|28|NZ_CP054012|PILER-CR matches to KR093652 (Moraxella phage Mcat28, complete genome) position: , mismatch: 4, identity: 0.857

gtaacctagactttcacgtttagacaag	CRISPR spacer
gtaacctagactttcaagtttagccaca	Protospacer
**************** ****** ** .

44. spacer 3.17|2525950|28|NZ_CP054012|PILER-CR matches to KR093655 (Moraxella phage Mcat31, complete genome) position: , mismatch: 4, identity: 0.857

gtaacctagactttcacgtttagacaag	CRISPR spacer
gtaacctagactttcaagtttagccaca	Protospacer
**************** ****** ** .

45. spacer 3.17|2525950|28|NZ_CP054012|PILER-CR matches to KR093650 (Moraxella phage Mcat26, complete genome) position: , mismatch: 4, identity: 0.857

gtaacctagactttcacgtttagacaag	CRISPR spacer
gtaacctagactttcaagtttagccaca	Protospacer
**************** ****** ** .

46. spacer 3.17|2525950|28|NZ_CP054012|PILER-CR matches to KR093649 (Moraxella phage Mcat25, complete genome) position: , mismatch: 4, identity: 0.857

gtaacctagactttcacgtttagacaag	CRISPR spacer
gtaacctagactttcaagtttagccaca	Protospacer
**************** ****** ** .

47. spacer 3.17|2525950|28|NZ_CP054012|PILER-CR matches to KR093648 (Moraxella phage Mcat24, complete genome) position: , mismatch: 4, identity: 0.857

gtaacctagactttcacgtttagacaag	CRISPR spacer
gtaacctagactttcaagtttagccaca	Protospacer
**************** ****** ** .

48. spacer 3.17|2525950|28|NZ_CP054012|PILER-CR matches to KR093651 (Moraxella phage Mcat27, complete genome) position: , mismatch: 4, identity: 0.857

gtaacctagactttcacgtttagacaag	CRISPR spacer
gtaacctagactttcaagtttagccaca	Protospacer
**************** ****** ** .

49. spacer 3.10|2526410|29|NZ_CP054012|CRISPRCasFinder,PILER-CR matches to MH616963 (CrAssphage sp. isolate ctbg_1, complete genome) position: , mismatch: 5, identity: 0.828

ttcattagaataacctctatcttcataac	CRISPR spacer
ctcattagaataccctctgtcttcatatt	Protospacer
.*********** *****.******** .

50. spacer 3.10|2526410|29|NZ_CP054012|CRISPRCasFinder,PILER-CR matches to MT774384 (CrAssphage cr8_1, complete genome) position: , mismatch: 5, identity: 0.828

ttcattagaataacctctatcttcataac	CRISPR spacer
ctcattagaataacctctgtcatcatagt	Protospacer
.*****************.** *****..

51. spacer 3.6|2526102|30|NZ_CP054012|CRISPRCasFinder matches to NZ_CP050074 (Enterobacter kobei strain 070 plasmid p070, complete sequence) position: , mismatch: 6, identity: 0.8

acgtc-gtttgacatttgccaaccgattacg	CRISPR spacer
-cgccagtttgacattcgccaaccgataaaa	Protospacer
 **.* **********.********** * .

52. spacer 3.6|2526102|30|NZ_CP054012|CRISPRCasFinder matches to NZ_CP035216 (Klebsiella michiganensis strain M82255 plasmid pKOCBH-B, complete sequence) position: , mismatch: 6, identity: 0.8

acgtc-gtttgacatttgccaaccgattacg	CRISPR spacer
-cgccagtttgacattcgccaaccgataaaa	Protospacer
 **.* **********.********** * .

53. spacer 3.6|2526102|30|NZ_CP054012|CRISPRCasFinder matches to NZ_CP026272 (Klebsiella oxytoca strain KONIH4 plasmid pKPC-f607, complete sequence) position: , mismatch: 6, identity: 0.8

acgtc-gtttgacatttgccaaccgattacg	CRISPR spacer
-cgccagtttgacattcgccaaccgataaaa	Protospacer
 **.* **********.********** * .

54. spacer 3.6|2526102|30|NZ_CP054012|CRISPRCasFinder matches to NZ_CP026182 (Klebsiella pneumoniae strain KPNIH49 plasmid pKPN-0c4e, complete sequence) position: , mismatch: 6, identity: 0.8

acgtc-gtttgacatttgccaaccgattacg	CRISPR spacer
-cgccagtttgacattcgccaaccgataaaa	Protospacer
 **.* **********.********** * .

55. spacer 3.6|2526102|30|NZ_CP054012|CRISPRCasFinder matches to NZ_CP011587 (Enterobacter asburiae strain CAV1043 plasmid pCAV1043-51, complete sequence) position: , mismatch: 6, identity: 0.8

acgtc-gtttgacatttgccaaccgattacg	CRISPR spacer
-cgccagtttgacattcgccaaccgataaaa	Protospacer
 **.* **********.********** * .

56. spacer 3.6|2526102|30|NZ_CP054012|CRISPRCasFinder matches to NZ_CP041248 (Raoultella electrica strain DSM 102253 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

acgtc-gtttgacatttgccaaccgattacg	CRISPR spacer
-cgccagtttgacattcgccaaccgataaaa	Protospacer
 **.* **********.********** * .

57. spacer 3.6|2526102|30|NZ_CP054012|CRISPRCasFinder matches to NZ_CP011633 (Klebsiella oxytoca strain CAV1374 plasmid pCAV1374-150, complete sequence) position: , mismatch: 6, identity: 0.8

acgtc-gtttgacatttgccaaccgattacg	CRISPR spacer
-cgccagtttgacattcgccaaccgataaaa	Protospacer
 **.* **********.********** * .

58. spacer 3.6|2526102|30|NZ_CP054012|CRISPRCasFinder matches to MT219824 (Escherichia coli strain RT18-1 plasmid pRT18-1_294k_tetX, complete sequence) position: , mismatch: 6, identity: 0.8

acgtc-gtttgacatttgccaaccgattacg	CRISPR spacer
-cgccagtttgacattcgccaaccgataaaa	Protospacer
 **.* **********.********** * .

59. spacer 3.6|2526102|30|NZ_CP054012|CRISPRCasFinder matches to NZ_CP048383 (Citrobacter freundii strain 62 plasmid p6_A, complete sequence) position: , mismatch: 6, identity: 0.8

acgtc-gtttgacatttgccaaccgattacg	CRISPR spacer
-cgccagtttgacattcgccaaccgataaaa	Protospacer
 **.* **********.********** * .

60. spacer 3.6|2526102|30|NZ_CP054012|CRISPRCasFinder matches to NZ_CP026282 (Klebsiella oxytoca strain KONIH2 plasmid pKOR-e3cb, complete sequence) position: , mismatch: 6, identity: 0.8

acgtc-gtttgacatttgccaaccgattacg	CRISPR spacer
-cgccagtttgacattcgccaaccgataaaa	Protospacer
 **.* **********.********** * .

61. spacer 3.6|2526102|30|NZ_CP054012|CRISPRCasFinder matches to NZ_CP010166 (Escherichia coli strain H2 plasmid C, complete sequence) position: , mismatch: 6, identity: 0.8

acgtc-gtttgacatttgccaaccgattacg	CRISPR spacer
-cgccagtttgacattcgccaaccgataaaa	Protospacer
 **.* **********.********** * .

62. spacer 3.6|2526102|30|NZ_CP054012|CRISPRCasFinder matches to NZ_CP048352 (Raoultella ornithinolytica strain 23 plasmid p23_C, complete sequence) position: , mismatch: 6, identity: 0.8

acgtc-gtttgacatttgccaaccgattacg	CRISPR spacer
-cgccagtttgacattcgccaaccgataaaa	Protospacer
 **.* **********.********** * .

63. spacer 3.6|2526102|30|NZ_CP054012|CRISPRCasFinder matches to NZ_CP029729 (Citrobacter sp. CRE-46 strain AR_0157 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.8

acgtc-gtttgacatttgccaaccgattacg	CRISPR spacer
-cgccagtttgacattcgccaaccgataaaa	Protospacer
 **.* **********.********** * .

64. spacer 3.6|2526102|30|NZ_CP054012|CRISPRCasFinder matches to NZ_CP026237 (Citrobacter freundii complex sp. CFNIH3 plasmid pCFR-9161, complete sequence) position: , mismatch: 6, identity: 0.8

acgtc-gtttgacatttgccaaccgattacg	CRISPR spacer
-cgccagtttgacattcgccaaccgataaaa	Protospacer
 **.* **********.********** * .

65. spacer 3.6|2526102|30|NZ_CP054012|CRISPRCasFinder matches to NZ_CP026206 (Escherichia coli strain ECONIH5 plasmid pECO-cbb3, complete sequence) position: , mismatch: 6, identity: 0.8

acgtc-gtttgacatttgccaaccgattacg	CRISPR spacer
-cgccagtttgacattcgccaaccgataaaa	Protospacer
 **.* **********.********** * .

66. spacer 3.6|2526102|30|NZ_CP054012|CRISPRCasFinder matches to MG516909 (Escherichia coli plasmid pEc1675, complete sequence) position: , mismatch: 6, identity: 0.8

acgtc-gtttgacatttgccaaccgattacg	CRISPR spacer
-cgccagtttgacattcgccaaccgataaaa	Protospacer
 **.* **********.********** * .

67. spacer 3.6|2526102|30|NZ_CP054012|CRISPRCasFinder matches to NZ_CP026404 (Escherichia coli strain ECONIH4 plasmid pECO-6357, complete sequence) position: , mismatch: 6, identity: 0.8

acgtc-gtttgacatttgccaaccgattacg	CRISPR spacer
-cgccagtttgacattcgccaaccgataaaa	Protospacer
 **.* **********.********** * .

68. spacer 3.6|2526102|30|NZ_CP054012|CRISPRCasFinder matches to NZ_CP026058 (Citrobacter freundii strain FDAARGOS_73 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.8

acgtc-gtttgacatttgccaaccgattacg	CRISPR spacer
-cgccagtttgacattcgccaaccgataaaa	Protospacer
 **.* **********.********** * .

69. spacer 3.6|2526102|30|NZ_CP054012|CRISPRCasFinder matches to NZ_CP022155 (Escherichia coli strain ABWA45 plasmid pABWA45_1, complete sequence) position: , mismatch: 6, identity: 0.8

acgtc-gtttgacatttgccaaccgattacg	CRISPR spacer
-cgccagtttgacattcgccaaccgataaaa	Protospacer
 **.* **********.********** * .

70. spacer 3.6|2526102|30|NZ_CP054012|CRISPRCasFinder matches to NZ_CP026234 (Citrobacter freundii complex sp. CFNIH4 plasmid pCFR-4109, complete sequence) position: , mismatch: 6, identity: 0.8

acgtc-gtttgacatttgccaaccgattacg	CRISPR spacer
-cgccagtttgacattcgccaaccgataaaa	Protospacer
 **.* **********.********** * .

71. spacer 3.12|2526563|29|NZ_CP054012|CRISPRCasFinder,PILER-CR matches to MN693120 (Marine virus AFVG_25M98, complete genome) position: , mismatch: 7, identity: 0.759

aatacttcttggattgtcttcatgatcta	CRISPR spacer
ggaacttcttcgattgtattcatgatcct	Protospacer
.. ******* ****** *********. 

72. spacer 3.13|2526639|29|NZ_CP054012|CRISPRCasFinder,PILER-CR matches to NZ_AP019726 (Bacteroides uniformis strain NBRC 113350 plasmid pBUN2, complete sequence) position: , mismatch: 7, identity: 0.759

cagaacatttgctgaaatacttcacgtaa	CRISPR spacer
cagaacatttgatgaaacacttccttcag	Protospacer
*********** *****.***** . .*.

73. spacer 3.14|2526715|30|NZ_CP054012|CRISPRCasFinder,PILER-CR matches to MN693944 (Marine virus AFVG_250M270, complete genome) position: , mismatch: 7, identity: 0.767

tgagaagtgcaattcaaattaaatcccgtt	CRISPR spacer
tgagaagtgcaattgaaactaaagatactt	Protospacer
************** ***.****  .  **

74. spacer 2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 8, identity: 0.765

aggatctcctcgttgccgccgaaggtgacggtat-	CRISPR spacer
aggatctcctccttgccggcgaa-gtagtagtaca	Protospacer
*********** ****** **** **....***. 

75. spacer 3.10|2526410|29|NZ_CP054012|CRISPRCasFinder,PILER-CR matches to NZ_CP053834 (Arcobacter cloacae strain LMG 26153 plasmid pACLO, complete sequence) position: , mismatch: 8, identity: 0.724

ttcattagaataacctctatcttcataac	CRISPR spacer
caatttagaataacctttttcttcatatt	Protospacer
.   ************.* ******** .

76. spacer 2.1|1784056|33|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT matches to MK448824 (Streptococcus phage Javan637, complete genome) position: , mismatch: 9, identity: 0.727

ttccttttttccacaataaaaagcgtatttatc	CRISPR spacer
ttctttttttccataataaaaagccaccacata	Protospacer
***.*********.**********   . .** 

77. spacer 2.1|1784056|33|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT matches to MK448965 (Streptococcus phage Javan506, complete genome) position: , mismatch: 9, identity: 0.727

ttccttttttccacaataaaaagcgtatttatc-----	CRISPR spacer
ttccttttttacataataaaaagc-----caccacggt	Protospacer
********** **.**********     .*.*     

78. spacer 2.1|1784056|33|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT matches to MK448959 (Streptococcus phage Javan488, complete genome) position: , mismatch: 9, identity: 0.727

ttccttttttccacaataaaaagcgtatttatc-----	CRISPR spacer
ttccttttttacataataaaaagc-----caccacggt	Protospacer
********** **.**********     .*.*     

79. spacer 2.1|1784056|33|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT matches to MK448949 (Streptococcus phage Javan460, complete genome) position: , mismatch: 9, identity: 0.727

ttccttttttccacaataaaaagcgtatttatc-----	CRISPR spacer
ttccttttttacataataaaaagc-----caccacggt	Protospacer
********** **.**********     .*.*     

80. spacer 2.1|1784056|33|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT matches to MK449002 (Streptococcus phage Javan642, complete genome) position: , mismatch: 9, identity: 0.727

ttccttttttccacaataaaaagcgtatttatc	CRISPR spacer
ttctttttttccataataaaaagccaccacata	Protospacer
***.*********.**********   . .** 

81. spacer 2.1|1784056|33|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT matches to MK448694 (Streptococcus phage Javan179, complete genome) position: , mismatch: 9, identity: 0.727

ttccttttttccacaataaaaagcgtatttatc	CRISPR spacer
gaccttttttgcataataaaaagcgtcatcttt	Protospacer
  ******** **.************  *. *.

82. spacer 2.1|1784056|33|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT matches to MK449003 (Streptococcus phage Javan648, complete genome) position: , mismatch: 9, identity: 0.727

ttccttttttccacaataaaaagcgtatttatc	CRISPR spacer
ttctttttttccataataaaaagccaccacata	Protospacer
***.*********.**********   . .** 

83. spacer 2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049790 (Ralstonia solanacearum strain 202 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

aggatctcctcgttgccgccgaaggtgacggtat	CRISPR spacer
accacctcctcgttgctgccgaagctgacgcgcg	Protospacer
*  *.***********.******* *****    

84. spacer 2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016915 (Ralstonia solanacearum strain CQPS-1 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

aggatctcctcgttgccgccgaaggtgacggtat	CRISPR spacer
accacctcctcgttgctgccgaagctgacgcgcg	Protospacer
*  *.***********.******* *****    

85. spacer 2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT matches to CP023015 (Ralstonia solanacearum strain T25 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

aggatctcctcgttgccgccgaaggtgacggtat	CRISPR spacer
accacctcctcgttgctgccgaagctgacgcgcg	Protospacer
*  *.***********.******* *****    

86. spacer 2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052129 (Ralstonia solanacearum strain FJAT1303.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.735

aggatctcctcgttgccgccgaaggtgacggtat	CRISPR spacer
accacctcctcgttgctgccgaagctgacgcgcg	Protospacer
*  *.***********.******* *****    

87. spacer 2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052111 (Ralstonia solanacearum strain FJAT15244.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.735

aggatctcctcgttgccgccgaaggtgacggtat	CRISPR spacer
accacctcctcgttgctgccgaagctgacgcgcg	Protospacer
*  *.***********.******* *****    

88. spacer 2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052113 (Ralstonia solanacearum strain FJAT15244.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.735

aggatctcctcgttgccgccgaaggtgacggtat	CRISPR spacer
accacctcctcgttgctgccgaagctgacgcgcg	Protospacer
*  *.***********.******* *****    

89. spacer 2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT matches to CP023013 (Ralstonia solanacearum strain T110 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

aggatctcctcgttgccgccgaaggtgacggtat	CRISPR spacer
accacctcctcgttgctgccgaagctgacgcgcg	Protospacer
*  *.***********.******* *****    

90. spacer 2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049794 (Ralstonia solanacearum strain 204 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

aggatctcctcgttgccgccgaaggtgacggtat	CRISPR spacer
accacctcctcgttgctgccgaagctgacgcgcg	Protospacer
*  *.***********.******* *****    

91. spacer 2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049788 (Ralstonia solanacearum strain B2 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

aggatctcctcgttgccgccgaaggtgacggtat	CRISPR spacer
accacctcctcgttgctgccgaagctgacgcgcg	Protospacer
*  *.***********.******* *****    

92. spacer 2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021763 (Ralstonia pseudosolanacearum strain RS 476 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

aggatctcctcgttgccgccgaaggtgacggtat	CRISPR spacer
accacctcctcgttgctgccgaagctgacgcgcg	Protospacer
*  *.***********.******* *****    

93. spacer 2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015116 (Ralstonia solanacearum strain EP1 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

aggatctcctcgttgccgccgaaggtgacggtat	CRISPR spacer
accacctcctcgttgctgccgaagctgacgcgcg	Protospacer
*  *.***********.******* *****    

94. spacer 2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049792 (Ralstonia solanacearum strain 203 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

aggatctcctcgttgccgccgaaggtgacggtat	CRISPR spacer
accacctcctcgttgctgccgaagctgacgcgcg	Protospacer
*  *.***********.******* *****    

95. spacer 2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022783 (Ralstonia solanacearum strain SL3755 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

aggatctcctcgttgccgccgaaggtgacggtat	CRISPR spacer
accacctcctcgttgctgccgaagctgacgcgcg	Protospacer
*  *.***********.******* *****    

96. spacer 2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022795 (Ralstonia solanacearum strain SL2330 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

aggatctcctcgttgccgccgaaggtgacggtat	CRISPR spacer
accacctcctcgttgctgccgaagctgacgcgcg	Protospacer
*  *.***********.******* *****    

97. spacer 2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009763 (Ralstonia solanacearum OE1-1 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

aggatctcctcgttgccgccgaaggtgacggtat	CRISPR spacer
accacctcctcgttgctgccgaagctgacgcgcg	Protospacer
*  *.***********.******* *****    

98. spacer 2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052085 (Ralstonia solanacearum strain FJAT15353.F8 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.735

aggatctcctcgttgccgccgaaggtgacggtat	CRISPR spacer
accacctcctcgttgctgccgaagctgacgcgcg	Protospacer
*  *.***********.******* *****    

99. spacer 2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052095 (Ralstonia solanacearum strain FJAT15340.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.735

aggatctcctcgttgccgccgaaggtgacggtat	CRISPR spacer
accacctcctcgttgctgccgaagctgacgcgcg	Protospacer
*  *.***********.******* *****    

100. spacer 2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021765 (Ralstonia pseudosolanacearum strain CRMRs218 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.735

aggatctcctcgttgccgccgaaggtgacggtat	CRISPR spacer
accacctcctcgttgctgccgaagctgacgcgcg	Protospacer
*  *.***********.******* *****    

101. spacer 2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052087 (Ralstonia solanacearum strain FJAT15353.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.735

aggatctcctcgttgccgccgaaggtgacggtat	CRISPR spacer
accacctcctcgttgctgccgaagctgacgcgcg	Protospacer
*  *.***********.******* *****    

102. spacer 2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052097 (Ralstonia solanacearum strain FJAT15304.F6 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.735

aggatctcctcgttgccgccgaaggtgacggtat	CRISPR spacer
accacctcctcgttgctgccgaagctgacgcgcg	Protospacer
*  *.***********.******* *****    

103. spacer 2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052127 (Ralstonia solanacearum strain FJAT1303.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.735

aggatctcctcgttgccgccgaaggtgacggtat	CRISPR spacer
accacctcctcgttgctgccgaagctgacgcgcg	Protospacer
*  *.***********.******* *****    

104. spacer 2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052089 (Ralstonia solanacearum strain FJAT15353.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.735

aggatctcctcgttgccgccgaaggtgacggtat	CRISPR spacer
accacctcctcgttgctgccgaagctgacgcgcg	Protospacer
*  *.***********.******* *****    

105. spacer 2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052093 (Ralstonia solanacearum strain FJAT15340.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.735

aggatctcctcgttgccgccgaaggtgacggtat	CRISPR spacer
accacctcctcgttgctgccgaagctgacgcgcg	Protospacer
*  *.***********.******* *****    

106. spacer 2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052101 (Ralstonia solanacearum strain FJAT15304.F1 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.735

aggatctcctcgttgccgccgaaggtgacggtat	CRISPR spacer
accacctcctcgttgctgccgaagctgacgcgcg	Protospacer
*  *.***********.******* *****    

107. spacer 2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052099 (Ralstonia solanacearum strain FJAT15304.F50 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.735

aggatctcctcgttgccgccgaaggtgacggtat	CRISPR spacer
accacctcctcgttgctgccgaagctgacgcgcg	Protospacer
*  *.***********.******* *****    

108. spacer 2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052131 (Ralstonia solanacearum strain FJAT1303.F8 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.735

aggatctcctcgttgccgccgaaggtgacggtat	CRISPR spacer
accacctcctcgttgctgccgaagctgacgcgcg	Protospacer
*  *.***********.******* *****    

109. spacer 2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP052091 (Ralstonia solanacearum strain FJAT15340.F6 plasmid Plas1, complete sequence) position: , mismatch: 9, identity: 0.735

aggatctcctcgttgccgccgaaggtgacggtat	CRISPR spacer
accacctcctcgttgctgccgaagctgacgcgcg	Protospacer
*  *.***********.******* *****    

110. spacer 3.14|2526715|30|NZ_CP054012|CRISPRCasFinder,PILER-CR matches to MK448709 (Streptococcus phage Javan231, complete genome) position: , mismatch: 9, identity: 0.7

tgagaagtgcaattcaaattaaatcccgtt	CRISPR spacer
caagaagtggaattcaaattaaaaggtgga	Protospacer
..******* *************   .*  

111. spacer 3.14|2526715|30|NZ_CP054012|CRISPRCasFinder,PILER-CR matches to MK448710 (Streptococcus phage Javan233, complete genome) position: , mismatch: 9, identity: 0.7

tgagaagtgcaattcaaattaaatcccgtt	CRISPR spacer
caagaagtggaattcaaattaaaaggtgga	Protospacer
..******* *************   .*  

112. spacer 3.14|2526715|30|NZ_CP054012|CRISPRCasFinder,PILER-CR matches to MK448721 (Streptococcus phage Javan263, complete genome) position: , mismatch: 9, identity: 0.7

tgagaagtgcaattcaaattaaatcccgtt	CRISPR spacer
caagaagtggaattcaaattaaaaggtggg	Protospacer
..******* *************   .*  

113. spacer 2.1|1784056|33|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT matches to MK448681 (Streptococcus phage Javan141, complete genome) position: , mismatch: 10, identity: 0.697

ttccttttttccacaataaaaagcgtatttatc	CRISPR spacer
ttccttttttacataataaaaagccaccacaat	Protospacer
********** **.**********   . .* .

114. spacer 2.1|1784056|33|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT matches to MK448672 (Streptococcus phage Javan117, complete genome) position: , mismatch: 10, identity: 0.697

ttccttttttccacaataaaaagcgtatttatc	CRISPR spacer
ttccttttttacataataaaaagccaccacaat	Protospacer
********** **.**********   . .* .

115. spacer 2.1|1784056|33|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT matches to MK448849 (Streptococcus phage Javan128, complete genome) position: , mismatch: 10, identity: 0.697

ttccttttttccacaataaaaagcgtatttatc	CRISPR spacer
ttccttttttacataataaaaagccaccacaat	Protospacer
********** **.**********   . .* .

116. spacer 2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 10, identity: 0.706

aggatctcctcgttgccgccgaaggtgacggtat	CRISPR spacer
atcttcttctcgttggcgccgaaggtgaggccgg	Protospacer
*   ***.******* ************ * .. 

117. spacer 2.5|1784326|34|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 10, identity: 0.706

aggatctcctcgttgccgccgaaggtgacggtat	CRISPR spacer
atcttcttctcgttggcgccgaaggtgaggccgg	Protospacer
*   ***.******* ************ * .. 

118. spacer 2.4|1784257|37|NZ_CP054012|PILER-CR,CRISPRCasFinder,CRT matches to KF598856 (Staphylococcus phage YMC/09/04/R1988, complete genome) position: , mismatch: 11, identity: 0.703

tatccattatctttaatttttgtcgttaatccggcac	CRISPR spacer
tcataattatctttactttttatcgttaatctattat	Protospacer
*  . ********** *****.*********.. .*.

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	1168484 : 1177529	8	Synechococcus_phage(42.86%)	NA	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>NZ_CP054012|1168484:1177529|DBSCAN-SWA
GATGAAAAAGTACGACGCGATTATTATTGGTTTTGGGAAAGGTGGAAAAACCTTGGCGGCGGATTTGGCTAACCATGGATGGAATGTAGCTGTGGTGGAGCGTTCGACGGGTATGTACGGAGGCACTTGTATCAATATCGGCTGTATACCGACGAAAGCGCTTGTACATTACGCTCAAGTGACAGGGTATCGCAGACCTTCTACCTTCGAGCAACATGCGGAGGAGTTTAAACAGGCTATCCTCGCCAAGGAGAAACTGACCTCTTTGCTTCGTGAGAAGAATTTCAAGAATCTGGATGATCGGGAGACCGTAACGGTCTATACCGGAGAGGCTTCTTTTCGTTCCCCTTATGAGATTGTCGTGAAAACGGATACGGACTCTTTCTTGCTGGAAGGCGAGAAGATATTCATCAATGCCGGAGCCACGACGATTATTCCTACGATAAGCGGTATCGAGGATAATCCTTACGTATATACAAGTACTTCCATTATGGAACTGGAGAAACTGCCACGGCATCTGGTTATTGTCGGAGGCGGATATATCGGGCTGGAATTCGCTTCCATGTTCGCCGGTTTTGGGTCGGAGGTAACGATCTTGGAGGCAGGGGAGGTGTTCATCCCTCGTGAGGACCGGGACATCGCCGATTCGGTGAAGTCTACGCTAGAGAAAAAAGGGATCGCCATTCATTTGAATACGGTCGTGCAGACGATCGAGCAGGATGCCGAGCGGGCTACGGTGATCTGCCGTAACGCTATCTCGGGAGATACCTTGCGGCTGGATGCCGAGGCGGTGCTTTTGGCTACCGGCCGTAAACCGAATACGGAAAGCCTAAATCTGCAAGCCGCCGGAATACGGACGACTAATCGTGGCGCTATCGAGGTGGATAGTAAGTTGCGTACCAATATCCCTAATATCTGGGCGATCGGGGATGTACATGGCGGATTGCAATTCACCTATCTGTCCTTGGATGATTACCGTATTATCCGGGAAGAGCTGTTTGGTAACGGTTTCCGGAGCTTGGACGATCGGGAAGCTGTGGCTTATTCCGTATTCATCGATCCTCCGTTGGCCCATGTCGGGCTGAACGAGACGCAAGCCCGTAAGATGGAGAAAAATATAAAGGTGGCCAGCCTGCCCGCTGCCGCCATGCCTCGTACCCGTACCATCGAGCAGACGGATGGCTTGCTGAAGGCCGTGGTAGATGCGGATACCGGGAAGATCCTAGGATGTACCTTATTCTGCGCCGAGTCCAGCGAAGTCATAAATACGGTTAGCTTGGCGATGCGTCTCGGGCAAGATTACACGTTCCTCCGGGATTCGATATTCACCCATCCGTCGATGAGTGAGGCTTTAAATGATCTATTTGGATTAATAAAATAAAAACATAAATATGAAAACATCAGACATTGGATTAATCGGCTTGGCCGTGATGGGCGAGAACCTTGCGTTGAATATGGAAAGCAAGGGGTTCACCGTATCCGTTTATAATCGTACGGCGCCGGGAGAGGAAGGCGTGGTAGATCGCTTCATGAGCGGTCGTGGAAAAGGAAAGAATTTTATAGGAACCCATACGATACAGGAATTTGTCGAGTCTATCGAGCGTCCTCGCAAGATTATGCTGATGGTAAAAGCGGGTGCCCCGGTGGATGAGCTGATGGCTCAATTGATCCCTTACTTATCACCCGGTGACGTGATTATTGATGGTGGTAACTCAGACTTCCATGATACGGAACGACGGGTGAAGGAGATGGAGGCGCATGGGATGTACTTCGTAGGTACCGGAATCTCCGGAGGCGAGATCGGTGCCTTGTACGGACCTTCGGTGATGCCGGGTGGTTCGCCTGCCGCTTGGCCTTTGGTGAAGGATGTCTTGCAAAGCATCGCCGCCAAGCTGGACGACGGGACGCCTTGTTGCCAATGGATTGGTCCGGGTGGAGCCGGCCATTTCGTGAAAATGGTACACAATGGTATCGAGTATGGAGATATGCAGTTGATTTCCGAGGCGTATTCCTTATTGAAGAATCGTCTGGATCTGGACAATGAGGCCTTGGCTCGTATCTTTGAGGATTGGAACACGGGAGAGCTGGATAGCTACCTGATCGGTATTACGGCCGATATTCTCCGCTTCAAGGACGAGGCGGGGGAGGGCTACCTGCTAGATAAGATATTGGATGCCGCCGGCCAGAAGGGTACCGGTAAATGGAGCGCTATCGCCGCTATGGACGAGAATGATCCGCTGACATTGATTACCGAGGCTGTTTATGCCCGTATGCTTTCTTCCATGCAGGAAGAACGGAAAAAAGCGTCCTCGCTTTATCCGAAGAGTGGCGTGCTGGGGCAGACCTTGATCTCGGAGAAAGAGATCAAGCAGGCTTTGTATGCCGCTAAGTTGGTTTCCTATGCGCAGGGATTCTCTTTGTTGTACCAAGCCTCTAAGCGATATGATTGGCAGTTGGATTACGGTACGATCGCCAAGATTTGGCGGAAGGGATGTATCATACGCTCTGTCTTTTTGGAGAAAATTACGCAGGCTTATGAGAAGAACCGGAATCTGGAGAACCTCTTATTCGATGAGTTCTTTATTCAAAAGATCGAGTCTTCCTTGTTGGCTTGGCGGCAAGTGGTAGCCGAGGGTGCCTTGCATGGAGTGGCTTTGCCGGCGATGAGCTCGGGGTTGAGCTATTTCGATGGACTGTCTACCCCGCATTCCGCCGCTAACTTGATTCAGGCCCAGCGGGATTATTTCGGGGCTCATACTTATGAGCGGGTCGATTGGGAGCGTGGTAAGTTTTTCCATACTAACTGGACGGGTGAGGGAGGAAAGACGGTTTCTGGAACTTATAACGTATAAAGACATGAAGAAAGCAGATAATCAATTATTAGTTATATTCGGGGCGTCGGGCGATCTTACCAGTCGCAAGTTGCTTCCCTCTTTGTTCGAGTTATATGTCCGGGGCTTGCTGCCCGACCGCTTCTGCATCTTGGGGGCCGCCCGTACCGCTTATGGTGATGAGGAGTTCCGTGCGGAGCAACATACGCATATCTTGGAGGCACAGAAGGGAAAGACTTACGACGAGGGCTTGATCGATGACTTCTTGGAGAATGTCTATTACCTCGCCTTCGATTCCACGAACGCCGATGAATACTACAAATTGCGTGAGCGCATCGAGTTCTTGCAAGAGAAACATGACTTGCCGGATAAGATCATCTATTACTTGGCTACCCCGCCGGTGATGTACGAGATCGTCCCGCAATGTTTGCTGGAGAGCGGTTTGAACAAGACCGAGTCTCCAGATGGTTTCAGGCGGATCATCGTAGAGAAGCCGTTCGGTACCAGCTTGGAGTCTGCCCGCCAGTTGAACGATCATTTACGACATATCTTCCATGAGGAGGAGATTTATCGTATCGACCATTATCTGGGGAAAGAGACCGTGCAGAATATCTTGGTATTGCGTTTCTCAAACGGTATTTTCGAGCCATTGTGGAATCATAATTATATCGATTCCATCGAGATCAGCGCTACCGAGACTTTGGGGGTGGAGAATCGAGGGAAATATTATGATGGAGCCGGGGCGATGCGGGATATGATCCAGAATCACTTGATGCAATTGATGTCGTTTATCGCCATGGAATCTCCCTCTATATTCGAGCCGGAACCGATTCGTGACGAGATCGTGAAAGTATTCCGCTCCATACGTCCGTATACGGTGTTGGATATGGATAAGATGGTTGTCCGCGGACAATATATCGGTTATCGGGAAGAGAAGAACGTAGCTCCCGACTCGAATACCGAGACGTATGTGGCGATGAAATTCTTCATCGATAACTGGCGCTGGAGCGGTGTGCCCTTCTATTTCTATACGGGAAAGAAGTTGCCGGAGAAGTCATCGGAGGTAGTGATCCACTTCAAGTCTACGCCCCATCAACTGTTTGTCGGTCAATGTTCGGGAGGTTCCTGCAATAAATTGACCATCCGTATCCAACCGAACGAGAGTATATCCTTGAAGTTCGGGCTGAAAATGCCGGGAGCCGGTTTCGAGGTGAAGCAAGTCAGCATGGACTTCCGCTACGATTCCCTCTCGAAGAGCTATCTTCCTGACGCTTACGAGCGTCTGTTGCTGGATGCCATGCTGGGCGATTCCACCCTGTATGCTCGTAGCGACGCTTTGGAGGCTAGCTGGAAATTTATCGATCCGATCTTGCTCCATTGGAAAGAGGAGGGTTCGAAGAACTTATTCTTCTATGAGCCGGGCGAGGACGGACCGGAGGAAACTGTTATTTTAGGTGCGGAAAAGAAAGTCTGCGCCTGCCAAAGAAGATAATTTTATGGAAATAAAGAGATATAATGAGATGAAAGAGGCGCTTCGGTCGATGACGGAGGATATGATGGCGATGATTCGCCGGAAAGACTTCGCTCCGTTTAACCTAGCGCTCTCGGGAGGGGAGACGGCGAAGCATATGTTTTCCCTCTGGGTAGATGAGTATAAGGATAAGATTGACTGGAATAACATCCGTTTCTTCTGGGTGGACGAGCGTTGCGTTCCACCAACGAGTCCAGATAGTAATTACGGTCATGCGAATCATTTGCTTTTTAAGCCTTTGCGTATCCCGGCGGACCATATCCACCGGATCAAGGGCGAGAACGAGCCGGGTACCGAGGCGATGCGTTATTCATGGGTCGTAAAGGAATTCTTGCCGTTGTTCAATCAAATGCCTACGTTCGATTGCATCATCCTCGGCGTAGGTGAGGATTCCCATACGGCATCCATTTTCCCTACCACCATGGAGCTATTGTCGGATAGCCGTAACTATGCGGTATCCCAGCAACCTTCTACCGGCCAATACCGGATCACCATGACGGGACCGCTTATCTTGAACGGCGCCCCCTTATTGGTCCCGATACTGGGCACGAACAAGGAACCCGTAATCCAGAGGCTCTCCAAAGGCTATTCCCCCTCAAACGACACGCCTGCGGCCTATATCTTATCGCATGCCGTACAGGCTACGATTTATGGGCTGAACCCATGATTTTGCTACATGCCGAGTCCTTCCCAAAAACATGTACGTGTTTTCGAAAAAACACGTACATATACTCCTCTCCTTGGAGAAGATATACTGCAAGTACCCTAGGAGATATACTTCACCGTCCAAGTAAGTACAACTTCTCGTGATATCCTATTAGTATATACAAGACTATTGCCCACATTTAAAGTGAATGTATTTGTTGGATTCATGTTTTTTTGCGAAGTTTGTTGCCTGAAAAGTAAGCTTTGAGACATGAATATGAGAAATATTGTACTGTGTATATTATATTTGTTTTTGGTGCCGATGGGAGGGTTTGCCCAATCTGAGGTCGTTGTCTTGTATCCCGATACTGAAAATAAGGATTTGGATGAAGCTGTATACCAAAAAATCTTTTTGGCCGGCACGATCGATATGGGGAAAAGCGTGGATTGGCAGAAGGCTACCTGCGACTGGTTCCGGGCGCTTCCGGAGGGACGGTATCTCTTGTTCAATCCTCGTAGAGATAAAGGGTTGAGCGGGGAGATGTCCGATTTTGAGCATCAAGTGAATTGGGAACTGGAGCATCTGGAGAAAGCCGATCTGATTATCATGAACATTCTGGCGAGCAGCAAATCCCCGATAACTTTATTGGAGATGGGGCTGTTTATGCGCTCCGGAAAGTTGCGGGTGATTTGCGAGCCCGGCTTTTACCGCTATGATAATGTGCGCTTAACTTGTGCGCGCTATGGCGTCCCATTGTATCAGAATATGGACGATTTTTTGAAAACCATGCGCTAATCTATTATTATTTGTTTAACTTTGTATAGTTTTAGGGACGGTGTGGAATCGATCCTAAGCGAGTATTGTCGAACAAAATGGAAAGAATATGAAAGGTATAGTTTTAGCCGGTGGATCGGGTACCCGCTTGTATCCGATCACTAAAGGAGTTTCCAAGCAACTTCTACCTATTTATGATAAGCCGATGATTTTTTATCCGGTATCCGTGCTCATGCTGGCAGGGATACGGGAGATTCTTATTATATCGACCCCTCAGGATTTGCCGGGCTTTCGTCGTTTACTGGGCGATGGCTCCGATTATGGCGTTCGTTTTGAATATGCCGAGCAGCCTTCACCGGACGGATTGGCGCAAGCTTTCATCATTGGAGAGCGTTTTATCGGCGATGACTCCGTTTGCTTGGTACTTGGCGATAATATCTTTTACGGACAGAGCTTTACCCGTATGTTAAAAGAGGCCGTTGACAAGGCGGAGAACGAACAAAAAGCGACCGTGTTCGGTTACTACGTAAACGATCCGGAACGCTATGGCGTGGCCGAGTTCGATGCGGATGGGAACGTCTTCAGTATCGAGGAGAAACCGAAGGAACCGAAGTCGAATTACGCCGTGGTAGGGTTGTATTTCTATCCGAACAAGGTGGTGGGCGTGGCCAAGAATATCAAGCCATCCGCCCGTGGAGAGCTGGAGATCACTACCGTGAACCAGTGGTTCTTGAAGGATGGGGAGTTGAAAGTGCAGCTATTGGGACGTGGATTCGCTTGGTTGGATACCGGGACTCACGACTCGTTGTCTGAGGCATCTACTTTCGTGGAGGTGATCGAGAAGAGACAGGGACTGAAGGTGGCTTGTCTGGAGGAGATCGCTTTCAAGCAAGGATGGATTGATGAGAAGCGACTTGAGCAAGTGGCTTTGCCGATGATTAAGAATCAGTACGGCCAGTATTTGATGAGGTTGATTAATAAGTAGAAGTAGTTCAGAATACGAGATATCGATGGAAAAAGACAGTAAAATATTTGTTGCCGGTCACCGGGGCTTGGTAGGCTCCGCCATCCTGAATAATTTGCGTAGCAAAGGGTATACGAACTTCCTGCTTCGTACGCATGCGGAACTGGATCTGACGGATCAAGCCGCTGTGAACGAGTTCTTTGCAGCCGAGCGGCCGGACTATGTGTTCTTGTCGGCGGCGCACGTCGGCGGTATCATGGCGAACAGTCTGTACCGTGCCGATTTTATCTACAATAATTTGATGATCCAGAATAATGTCATTCATGCCTCTTGGAAAAACAATGTAAAGAAATTATTATTCTTGGGAAGCACCTGCATCTATCCCCGTGAGGCTCCGCAGCCGATGCCGGAGGATTGCTTGCTGACATCTCCCTTGGAATATTCCAACGAGCCTTACGCGATCGCCAAGATAGCGGGTATCAAGATGTGCGAGAGTTACAACCTGCAATACGGTACGAACTATATCGCCGTGATGCCTACCAACCTCTACGGGCCGAATGATAATTTCAATCTGGAGACCTCGCATGTGTTGCCAGCCATGATCCGTAAGATCCATCTGGCGAAATGCCTGCATACAGGAGATTGGGAGGCCTTGCGTAAGGATATGGACATTCGTCCGGTAGAGGGCGTGTCTGGGAAGGCCTCCGAGCCGGAGATACTCTCCGTATTGGATAAACAGGGTATCCGTCCGGGCGAGGTGGAGCTGTGGGGAACCGGCAAGCCGCTTCGTGAGTTTTTATGGAGCGAGGAGATGGCCGACGCTTCTGTTTATATCATGGAACACGTGGATTTCGAGGATGTCCGCCAGAAGGAGGGCGAGGTCCGGAATACACATATTAATATAGGTACGGGTATCGAGCTTTCGATCCGTGAGGTCGCCGAACTGATCCGGCGAGAGATCGGGTTCGAGGGCGAGTTGAGGTTTAACTCGTCCAAGCCGGACGGTACGCTTCGTAAGCTGACGGATGTAAGCAAGTTGCATGCCTTGGGTTGGCGCCATACGATCGAGATCGAGGAGGGCGTGAAGCGACTCTATGAATGGTACTTGGGAATTGAAAAATGAGAATTGAAAATTGAAAATTAGAGAAATGGGCAAAGTAGCGTTAATAACGGGTATTACGGGACAGGATGGGGCTTATCTTACCGAGTTCTTGATCAAGAAAGGATATACGGTACACGGTATCAAGCGTCGTTCTTCCATGTTCAATACGGACCGTATCGATCATTTGTATCAAGACCCGCATGTGGAAAACCGTAATTTGATTTTGCATTATGGCGATTTAACGGATAGTTTGAATCTTACACGTATCATTGGCGAGGTTCAACCGGACGAGATCTATAATCTGGCCGCCATGAGCCATGTAAAAGTAAGTTTCGACACTCCCGAATATACTGCGAATGCGGATGGTTTGGGCGTATTGCGTATCCTAGAGGCGGTCCGTTTGCTGAACTTGATCCCGAAGACGCGTATTTACCAGGCATCTACATCCGAGTTGTATGGCTTGGTGCAAGAGGTGCCGCAGAGGGAGACTACTCCTTTCTATCCGAGAAGCCCTTATGCGGTAGCGAAACTATACGGTTACTGGATTACGGTGAATTACAGGGAAGCCTATCATATGCACGCTTCCAATGGCATCTTGTTTAATCATGAGTCTCCATTAAGGGGAGAGACATTCGTGACCCGTAAGGTAACCCGGGCGGTTTCACGTATCGTTTTGGGTATGCAAAAAAAGGTTTATATGGGTAATCTTTCCTCCAAACGGGATTGGGGACACGCAAAAGATTACGTGCGTGCCATGTACGCTATTTTGCAACAAGATGAACCCTCGGATTATGTCATAGCTACCGGGATTACTACCACGATTCGGGACTTTATCCGTATGGCTTTTGAGGAAATTGGCGTGGGAATCCGCTTTAAAGGAGAAGGGATAGACGAGGTCGCTATCATAGAGTCGATAGACGAGGGATTGTTCGTCAAGAAGGTTGGTGATGCCTATCTGGAAAACTTTAAGAAACGTGTGGGTGAGGAAGTTGTGGGAGTAGATCCGCAGTATTTCCGCCCTACGGAAGTAGAGTTGCTGATCGGTGACGCTACGAAGGCACGTACTCGTTTAGGGTGGGAACCGGAGTATTCATTAGCGGCTTTAATTGAGGATATGATGAAGAACGATATAAAACTAATGAAGAAGGAGTCTTATCTGAAAGAGGGGGGCTATAAAATTTTGAACTATTTCGAGTGA

Protein sequences of DBSCAN-SWA_1

>NZ_CP054012|1168484:1177529|1171339_1172806_+|WP_005857714.1|DBSCAN-SWA
MKKADNQLLVIFGASGDLTSRKLLPSLFELYVRGLLPDRFCILGAARTAYGDEEFRAEQHTHILEAQKGKTYDEGLIDDFLENVYYLAFDSTNADEYYKLRERIEFLQEKHDLPDKIIYYLATPPVMYEIVPQCLLESGLNKTESPDGFRRIIVEKPFGTSLESARQLNDHLRHIFHEEEIYRIDHYLGKETVQNILVLRFSNGIFEPLWNHNYIDSIEISATETLGVENRGKYYDGAGAMRDMIQNHLMQLMSFIAMESPSIFEPEPIRDEIVKVFRSIRPYTVLDMDKMVVRGQYIGYREEKNVAPDSNTETYVAMKFFIDNWRWSGVPFYFYTGKKLPEKSSEVVIHFKSTPHQLFVGQCSGGSCNKLTIRIQPNESISLKFGLKMPGAGFEVKQVSMDFRYDSLSKSYLPDAYERLLLDAMLGDSTLYARSDALEASWKFIDPILLHWKEEGSKNLFFYEPGEDGPEETVILGAEKKVCACQRR
>NZ_CP054012|1168484:1177529|1169874_1171335_+|WP_005857716.1|DBSCAN-SWA
MKTSDIGLIGLAVMGENLALNMESKGFTVSVYNRTAPGEEGVVDRFMSGRGKGKNFIGTHTIQEFVESIERPRKIMLMVKAGAPVDELMAQLIPYLSPGDVIIDGGNSDFHDTERRVKEMEAHGMYFVGTGISGGEIGALYGPSVMPGGSPAAWPLVKDVLQSIAAKLDDGTPCCQWIGPGGAGHFVKMVHNGIEYGDMQLISEAYSLLKNRLDLDNEALARIFEDWNTGELDSYLIGITADILRFKDEAGEGYLLDKILDAAGQKGTGKWSAIAAMDENDPLTLITEAVYARMLSSMQEERKKASSLYPKSGVLGQTLISEKEIKQALYAAKLVSYAQGFSLLYQASKRYDWQLDYGTIAKIWRKGCIIRSVFLEKITQAYEKNRNLENLLFDEFFIQKIESSLLAWRQVVAEGALHGVALPAMSSGLSYFDGLSTPHSAANLIQAQRDYFGAHTYERVDWERGKFFHTNWTGEGGKTVSGTYNV
>NZ_CP054012|1168484:1177529|1172810_1173512_+|WP_036628751.1|DBSCAN-SWA
MEIKRYNEMKEALRSMTEDMMAMIRRKDFAPFNLALSGGETAKHMFSLWVDEYKDKIDWNNIRFFWVDERCVPPTSPDSNYGHANHLLFKPLRIPADHIHRIKGENEPGTEAMRYSWVVKEFLPLFNQMPTFDCIILGVGEDSHTASIFPTTMELLSDSRNYAVSQQPSTGQYRITMTGPLILNGAPLLVPILGTNKEPVIQRLSKGYSPSNDTPAAYILSHAVQATIYGLNP
>NZ_CP054012|1168484:1177529|1175275_1176352_+|WP_005857705.1|DBSCAN-SWA
MEKDSKIFVAGHRGLVGSAILNNLRSKGYTNFLLRTHAELDLTDQAAVNEFFAAERPDYVFLSAAHVGGIMANSLYRADFIYNNLMIQNNVIHASWKNNVKKLLFLGSTCIYPREAPQPMPEDCLLTSPLEYSNEPYAIAKIAGIKMCESYNLQYGTNYIAVMPTNLYGPNDNFNLETSHVLPAMIRKIHLAKCLHTGDWEALRKDMDIRPVEGVSGKASEPEILSVLDKQGIRPGEVELWGTGKPLREFLWSEEMADASVYIMEHVDFEDVRQKEGEVRNTHINIGTGIELSIREVAELIRREIGFEGELRFNSSKPDGTLRKLTDVSKLHALGWRHTIEIEEGVKRLYEWYLGIEK
>NZ_CP054012|1168484:1177529|1176377_1177529_+|WP_005857703.1|DBSCAN-SWA
MGKVALITGITGQDGAYLTEFLIKKGYTVHGIKRRSSMFNTDRIDHLYQDPHVENRNLILHYGDLTDSLNLTRIIGEVQPDEIYNLAAMSHVKVSFDTPEYTANADGLGVLRILEAVRLLNLIPKTRIYQASTSELYGLVQEVPQRETTPFYPRSPYAVAKLYGYWITVNYREAYHMHASNGILFNHESPLRGETFVTRKVTRAVSRIVLGMQKKVYMGNLSSKRDWGHAKDYVRAMYAILQQDEPSDYVIATGITTTIRDFIRMAFEEIGVGIRFKGEGIDEVAIIESIDEGLFVKKVGDAYLENFKKRVGEEVVGVDPQYFRPTEVELLIGDATKARTRLGWEPEYSLAALIEDMMKNDIKLMKKESYLKEGGYKILNYFE
>NZ_CP054012|1168484:1177529|1173761_1174286_+|WP_005857710.1|DBSCAN-SWA
MNMRNIVLCILYLFLVPMGGFAQSEVVVLYPDTENKDLDEAVYQKIFLAGTIDMGKSVDWQKATCDWFRALPEGRYLLFNPRRDKGLSGEMSDFEHQVNWELEHLEKADLIIMNILASSKSPITLLEMGLFMRSGKLRVICEPGFYRYDNVRLTCARYGVPLYQNMDDFLKTMR
>NZ_CP054012|1168484:1177529|1174374_1175250_+|WP_005857708.1|DBSCAN-SWA
MKGIVLAGGSGTRLYPITKGVSKQLLPIYDKPMIFYPVSVLMLAGIREILIISTPQDLPGFRRLLGDGSDYGVRFEYAEQPSPDGLAQAFIIGERFIGDDSVCLVLGDNIFYGQSFTRMLKEAVDKAENEQKATVFGYYVNDPERYGVAEFDADGNVFSIEEKPKEPKSNYAVVGLYFYPNKVVGVAKNIKPSARGELEITTVNQWFLKDGELKVQLLGRGFAWLDTGTHDSLSEASTFVEVIEKRQGLKVACLEEIAFKQGWIDEKRLEQVALPMIKNQYGQYLMRLINK
>NZ_CP054012|1168484:1177529|1168484_1169864_+|WP_005857718.1|DBSCAN-SWA
MKKYDAIIIGFGKGGKTLAADLANHGWNVAVVERSTGMYGGTCINIGCIPTKALVHYAQVTGYRRPSTFEQHAEEFKQAILAKEKLTSLLREKNFKNLDDRETVTVYTGEASFRSPYEIVVKTDTDSFLLEGEKIFINAGATTIIPTISGIEDNPYVYTSTSIMELEKLPRHLVIVGGGYIGLEFASMFAGFGSEVTILEAGEVFIPREDRDIADSVKSTLEKKGIAIHLNTVVQTIEQDAERATVICRNAISGDTLRLDAEAVLLATGRKPNTESLNLQAAGIRTTNRGAIEVDSKLRTNIPNIWAIGDVHGGLQFTYLSLDDYRIIREELFGNGFRSLDDREAVAYSVFIDPPLAHVGLNETQARKMEKNIKVASLPAAAMPRTRTIEQTDGLLKAVVDADTGKILGCTLFCAESSEVINTVSLAMRLGQDYTFLRDSIFTHPSMSEALNDLFGLIK

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_005857718.1|1168484_1169864_+	FAD-dependent oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	2.6e-105	46.1
WP_005857716.1|1169874_1171335_+	decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	2.9e-38	27.2
WP_005857714.1|1171339_1172806_+	glucose-6-phosphate dehydrogenase	E3SJC5	Synechococcus_phage	6.8e-88	41.4
WP_036628751.1|1172810_1173512_+	6-phosphogluconolactonase	NA	NA	NA	NA
WP_005857710.1|1173761_1174286_+	hypothetical protein	K4JW05	Caulobacter_phage	1.7e-17	37.6
WP_005857708.1|1174374_1175250_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.0e-107	65.6
WP_005857705.1|1175275_1176352_+	GDP-L-fucose synthase	M4R1H4	Synechococcus_phage	6.3e-83	47.0
WP_005857703.1|1176377_1177529_+	GDP-mannose 4,6-dehydratase	A0A0E3F1J3	Synechococcus_phage	3.3e-122	62.3