CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP054015	Streptococcus gallolyticus strain FDAARGOS_755 chromosome, complete genome	2 crisprs	cas2,cas1,cas9,RT,DinG,DEDDh,csa3,cas3,csm6,WYL	0	17	7	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP054015_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP054015_1

40515-40897

TypeII

II-A

Consensus_repeat	Method
GTCTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	PILER-CR
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CRISPRCasFinder

5 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of NZ_CP054015_1

>merge|NZ_CP054015|1|40515-40897|PILER-CR,CRISPRCasFinder
GTTTTGGAACCATTCGAAACAACACAGCTCTAAAACTGCTTCTTAGCGGTGTTATTTTAATGGCAGGTTTTGGAACCATTCGGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACACTTACTATGACTATTTGTCACACTTTAATGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTCTAGAGACAATGGTGTTCTAGCAGATTCAGTCTTGGAACCATTCGAAACAGCACAGCTCTAAAACTTTTTGGTCTGGAGTTATCTTCCCTTGTGAGTCTTGGAACCATTCGAAACAGCACAGCTCTAAAACTTTTTGGTCTGGAGTTATCTTCCCTTGTGAGTCTTGGAACCATTCGAAACAGCACAGCTCTAAAACC

>NZ_CP054015|1|1|40515-40896|PILER-CR
GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC	TGCTTCTTAGCGGTGTTATTTTAATGGCAGGTTTTGGAACCATTCG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACTTACTATGACTATTTGTCACACTTTAAT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCTAGAGACAATGGTGTTCTAGCAGATTCA
GTCTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TTTTTGGTCTGGAGTTATCTTCCCTTGTGA
GTCTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TTTTTGGTCTGGAGTTATCTTCCCTTGTGA
GTCTTGGAACCATTCGAAACAGCACAGCTCTAAAAC

>NZ_CP054015|1|1|40515-40897|CRISPRCasFinder
GTTTTGGAACCATTCGAAACAACACAGCTCTAAAAC	TGCTTCTTAGCGGTGTTATTTTAATGGCAGGTTTTGGAACCATTCG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACTTACTATGACTATTTGTCACACTTTAAT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCTAGAGACAATGGTGTTCTAGCAGATTCA
GTCTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TTTTTGGTCTGGAGTTATCTTCCCTTGTGA
GTCTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TTTTTGGTCTGGAGTTATCTTCCCTTGTGA
GTCTTGGAACCATTCGAAACAGCACAGCTCTAAAACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054015.1\|WP_009854538.1\|44554_44899_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_CP054015.1\|WP_009854539.1\|44895_45762_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
NZ_CP054015.1\|WP_009854522.1\|31078_31552_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP054015.1\|WP_012962176.1\|51273_52047_-\|TIGR01457-family-HAD-type-hydrolase	unknown	unknown	gnl\|CDD\|319832
NZ_CP054015.1\|WP_009854529.1\|36536_37013_-\|shikimate-kinase	unknown	unknown	gnl\|CDD\|234654
NZ_CP054015.1\|WP_009854536.1\|43618_43807_-\|type-II-toxin-antitoxin-system-HicA-family-toxin	unknown	unknown	gnl\|CDD\|377942
NZ_CP054015.1\|WP_009854518.1\|28853_29741_-\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
NZ_CP054015.1\|WP_009854542.1\|50603_51299_-\|TIGR01906-family-membrane-protein	unknown	unknown	gnl\|CDD\|226884
NZ_CP054015.1\|WP_009854526.1\|33794_34028_-\|AbrB-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225215
NZ_CP054015.1\|WP_009854523.1\|31850_33212_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|225174
NZ_CP054015.1\|WP_009854540.1\|45761_49874_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
NZ_CP054015.1\|WP_009854528.1\|35715_36540_-\|prephenate-dehydratase	unknown	unknown	gnl\|CDD\|237013
NZ_CP054015.1\|WP_009854535.1\|43226_43607_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|374224
NZ_CP054015.1\|WP_009854541.1\|50431_50602_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054015.1\|WP_009854531.1\|40980_41397_-\|nucleoside-diphosphate-kinase	unknown	unknown	gnl\|CDD\|179085
NZ_CP054015.1\|WP_172855736.1\|43902_44568_-\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd09758_csn2_CAS-II-A	gnl\|CDD\|213408
NZ_CP054015.1\|WP_043878580.1\|37005_38289_-\|3-phosphoshikimate-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|235037
NZ_CP054015.1\|WP_013643274.1\|30264_30783_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054015.1\|WP_009854527.1\|34186_35629_-\|LCP-family-protein	unknown	unknown	gnl\|CDD\|224235
NZ_CP054015.1\|WP_003065532.1\|38510_40346_-\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462

Protein	Function_ID	Function_description	E-value
NZ_CP054015.1\|WP_009854538.1\|44554_44899_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.71482e-48
NZ_CP054015.1\|WP_009854539.1\|44895_45762_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	7.46732e-130
NZ_CP054015.1\|WP_009854522.1\|31078_31552_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.09298e-15
NZ_CP054015.1\|WP_012962176.1\|51273_52047_-\|TIGR01457-family-HAD-type-hydrolase	gnl\|CDD\|319832	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase. Escherichia coli UmpH/NagD is a ribonucleoside tri-, di-, and monophosphatase with a preference for purines, it shows peak activity with UMP and functions in UMP-degradation. It is also an effective phosphatase with AMP, GMP and CMP. Mycobacterium tuberculosis phosphatase, Rv1692 is a glycerol 3-phosphate phosphatase. Rv1692 is the final enzyme involved in glycerophospholipid recycling/catabolism. This subfamily belongs to the UmpH/NagD phosphatase family, and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.09682e-129
NZ_CP054015.1\|WP_009854529.1\|36536_37013_-\|shikimate-kinase	gnl\|CDD\|234654	PRK00131, aroK, shikimate kinase; Reviewed.	2.50906e-59
NZ_CP054015.1\|WP_009854536.1\|43618_43807_-\|type-II-toxin-antitoxin-system-HicA-family-toxin	gnl\|CDD\|377942	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,. HicA_toxin is a bacterial family of toxins that act as mRNA interferases. The antitoxin that neutralizes this is family HicB, pfam15919.	8.16808e-15
NZ_CP054015.1\|WP_009854540.1\|45761_49874_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
NZ_CP054015.1\|WP_009854518.1\|28853_29741_-\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	2.49683e-10
NZ_CP054015.1\|WP_009854542.1\|50603_51299_-\|TIGR01906-family-membrane-protein	gnl\|CDD\|226884	COG4478, COG4478, Predicted membrane protein [Function unknown].	2.06699e-66
NZ_CP054015.1\|WP_009854526.1\|33794_34028_-\|AbrB-family-transcriptional-regulator	gnl\|CDD\|225215	COG2336, MazE, Growth regulator [Signal transduction mechanisms].	7.60191e-05
NZ_CP054015.1\|WP_009854523.1\|31850_33212_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	3.03591e-178
NZ_CP054015.1\|WP_009854527.1\|34186_35629_-\|LCP-family-protein	gnl\|CDD\|224235	COG1316, LytR, Transcriptional regulator [Transcription].	5.63463e-55
NZ_CP054015.1\|WP_009854528.1\|35715_36540_-\|prephenate-dehydratase	gnl\|CDD\|237013	PRK11898, PRK11898, prephenate dehydratase; Provisional.	1.56293e-150
NZ_CP054015.1\|WP_009854531.1\|40980_41397_-\|nucleoside-diphosphate-kinase	gnl\|CDD\|179085	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated.	9.46762e-80
NZ_CP054015.1\|WP_172855736.1\|43902_44568_-\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	3.58428e-114
NZ_CP054015.1\|WP_043878580.1\|37005_38289_-\|3-phosphoshikimate-1-carboxyvinyltransferase	gnl\|CDD\|235037	PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional.	0
NZ_CP054015.1\|WP_009854535.1\|43226_43607_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|374224	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	2.96722e-17
NZ_CP054015.1\|WP_003065532.1\|38510_40346_-\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0

>NZ_CP054015.1|WP_003065532.1|38510_40346_-|elongation-factor-4
MDIQELKKRQEKIRNFSIIAHIDHGKSTLADRILEKTETVSSREMQAQLLDSMDLERERGITIKLNAIELNYTAKDGETYIFHLIDTPGHVDFSYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNDLEILPVINKIDLPAADPERVRQEIEDVIGLDASEAVLASAKAGIGIEEILEQIVEYVPAPAGDVEAPLQALIFDSVYDAYRGVILQVRIVNGMVKPGDKIQLMSNGKTFDVTEVGIFTPKAVGRDFLATGDVGYIAASIKTVADTRVGDTVTLAENPAEAPLHGYKQMNPMVFAGLYPIESNKYNDLREALEKLQLNDASLQFEPETSQALGFGFRCGFLGLLHMDVIQERLEREFNIDLIMTAPSVVYHVNTTDGEMLEVSNPSEFPDPTKVASIEEPYVKAQIMVPQEFVGAVMELAQRKRGDFVTMDYIDENRVNVIYQIPLAEIVFDFFDKLKSSTRGYASFDYEISEYRKSKLVKMDILLNGDKVDALSFIVHNEFAYERGKLIVEKLKKIIPRQQFEVPIQAAIGQKIVARSDIKALRKNVLAKCYGGDVSRKRKLLEKQKAGKKRMKAIGSVEVPQEAFLSVLSMDDDNSKK
>NZ_CP054015.1|WP_043878580.1|37005_38289_-|3-phosphoshikimate-1-carboxyvinyltransferase
MKLLTNVSQLKGTLRVPGDKSISHRSIMFGSLAKGTTTVHDILRGEDVLSTMQVFRDLGVDIQDDGNIVTITGVGFDGLKAPKNKLDMGNSGTSIRLISGVLAGQDFTVEMFGDDSLSKRPMDRVIIPLRQMGVEVSGQTDRDLPPLTMRGSKALKPIHYQLPVASAQVKSALIFAALQADGESVIIEKEKTRNHTEDMIVQFGGAIDVNGKEIRIKGGQEFTGQDVVVPGDISSAAFWLVAGLIVPNAKVTLENVGINETRTGIIDVIKEMGGKMTISNVDEIAKSATITVETSELHGVEIGGEIIPRLIDELPIIALLATQANGTTIIRDAEELKVKETDRIQVVADALNAMGADITPTDDGMIIKGKTPLHGAKVNTFGDHRIGMMTAIAALLVSDGDVELERAEAINTSYPSFFNDLEVLSRG
>NZ_CP054015.1|WP_009854529.1|36536_37013_-|shikimate-kinase
MARIIIGFMGSGKSTISSLLDENYIDMDALITERIGMSIADFFAKEGEAKFREIESQVLAELADSDQVISTGGGVVINPINREILAKNPETIYLKSDFETLYDRIEHDTENVRPLFVNNSKEAFKEIFDGRQEMYETAANRIIDVAGKTPEEIVEEIG
>NZ_CP054015.1|WP_009854528.1|35715_36540_-|prephenate-dehydratase
MKVGYLGPSGSFTHNVAVKAFPEANRMPFANITEVIKSYEEGFVDYAIIPVENSIEGSVHETLDYLFHQAEIEAIAEIIQPIKQQLLATTQTKKIEKIFSHPQAIAQGKKYIKAHYPAAKIEMTASTAYAARFIAEHPEENFAAIAPVAAAKEYGLEIIAQDIQEMDENYTRFWVLGHQKWSFDLAKLNQKVSLALTLPDNLPGALYKALSVFAWRGIDLTKIESRPLKTALGEYFFIVDVENKNDTLVSFALEELSVLGIGYKILGRYDVYKL
>NZ_CP054015.1|WP_009854527.1|34186_35629_-|LCP-family-protein
MARSNLSRHEELRYEYLLSNLEYLSAREKQEFDYLYNKKQASEVSEPPRSQPSSAYNDNYYGDYYDDAYDNQVDYYDDDNWTSQGLPKYPEEKKQSKRSFRRTSEQQAEILPTYQDNYENYNEAFYQEPEPVTPKKAKKPKKKRRKIRIKRLLKLLGFLVILVMAGMIYMFFKGVNDVSSGETNYTAAVTETFNGEDSDDGTNILILGSDQRITQGSSDARTDTIMVMNIGNSDGKIKLVSFMRDTLVNIDGVSYNAYSNDQKLNVAFNIGEQDDNQGAELMRQTLKDNFDINIKYYVMVDFETFAEAIDTLFPNGVEIDAKFGTVDGQAVSSVEVPDDLNMQADGTVPNQTIEVGTQKMDGRTLLNYARFRKDDDGDYGRTQRQQQVISAIINQIKDPSKLFTGSAAIGKIYALTSTNISYPFLLKEGLSVITSGQEGIEQTTIPAEGDWTDDYDMYGGLGIAIDFDKYQEELKELGLR
>NZ_CP054015.1|WP_009854526.1|33794_34028_-|AbrB-family-transcriptional-regulator
MIVKSRKQGNSLMITIPSYLNVPEGTEYEVKASANGELIFSPVEKSKREFATNEDISAITDDIFKDYDDVFKELVDK
>NZ_CP054015.1|WP_009854523.1|31850_33212_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MLSKNAIVDAEITDLSHEGAGVAKVDGFVFFVENALPGEKIKMRVLKVKKNIGFGKVEEYVTISEHRNQDLNVDYLRTGIADFGHLAYAEQLKFKRKQVMDNLYKTAGISDIEVSETLGMAHPYAYRNKAQVPVRRVNGQLETGFFRKHSHDLMPISDYYIQNKEIDRLINFTRDLLRRFDLKPYDEKEQTGLIRNLVVRRGHYSGKMMLVFVTTRPKIFRIEQIIEKIVAEFPAVKSIVQNINDKNTNVIFGNEFKTLYGKDTIIDSMLGNQYEISARSFYQVNTEMAERLYQTAIDFSDLTPEDIVIDAYSGIGTIGLSFAKNVKAVYGVEVIEEAVEDAKRNAALNGITNAHYVADSAEHAMATWSKDGIKPSVILVDPPRKGLTENFIKASVAMQPEKITYISCNPASMARDIKLYQELGYKLIKVQPVDLFPNTHHVETVVLMSRVER
>NZ_CP054015.1|WP_009854522.1|31078_31552_-|GNAT-family-N-acetyltransferase
MKIETYKGKYDDEIISLILDIQNNEAKINLSLQEQPDLIDISRFYQQDGGEFWIALSDEKVVGTIGLMLKENQCAILKKFFVHKDFRSKKVGLSLYNALLKYAKEIDIQHIILDTPSVATASHRFYERAGFHIISMEELPIPYTYPDRDSILYMLDF
>NZ_CP054015.1|WP_013643274.1|30264_30783_-|hypothetical-protein
MGLLDFFKKKKRLTSSDVLDDESYIKEIRHCSQEAWHQYDVLLAARGYGWKGMVDWASYMNKADLMNISTITYSSLPGSKEIECIESFRQNENDFFKMQELKDEQSSLAVGGESKTLKVPIKIVWFNQTRTLRFFTLFLDDEKLMERYIETMIRRTFLTADAMKLAKSGRID
>NZ_CP054015.1|WP_009854518.1|28853_29741_-|CPBP-family-intramembrane-metalloprotease
MNKGYSRKEVQRYLLWTFALAWLMQIVVAIVYHMGNTLFVQLLLSIMMFTPLLGVLLTKHHLKGLGWKFQFKGNVKVFLITWFAPLLLTVLGAILYFMIFPKQFDLSGQYYAASYNGKEALAQLQAKGISYPLLVLINTFACITYAPVINAMLAIGEEVGWRGFLYPQLKAKYGKNKGRLLGGIIWGIWHWPIIGLIGYEYGTDYPGFPIVGMLIFCIFTVTSGILCDWVYEKSKSIWFPAICHGAINAVTLLPLMVCVVNTGAMTLLGPALIGIVSGIPLFIFAMFLFFKSKQN
>NZ_CP054015.1|WP_009854531.1|40980_41397_-|nucleoside-diphosphate-kinase
MEKTFFMIKPDGVRRGLVGEVLHRIERRGFTIEKLEMRMATPELLEKHYADLVDRPFFPLIVDFMTSGPVITGVMSGNEVITSWRTMMGATNPKEALPGTIRGDYAQAPDEGGATFNIVHGSDSPESVEREIALWFGE
>NZ_CP054015.1|WP_009854535.1|43226_43607_-|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MLKSYPAIFHKEDDGSFWVEFPGFGGGTEGDDVEEAMKNAREMLESSLAAYLDEGLELPKVVNMSELSVEDGFITLIQADPSPYLKSTKAIRKNVTVPEWLVRLADRENVNYSEVLTQALEKKLQL
>NZ_CP054015.1|WP_009854536.1|43618_43807_-|type-II-toxin-antitoxin-system-HicA-family-toxin
MPLTGRELAKLAVLKGWKEVRVKGSHHQFKKDGVPYILTIPIHGNKVLGVGLEKKILKDIGL
>NZ_CP054015.1|WP_172855736.1|43902_44568_-|type-II-A-CRISPR-associated-protein-Csn2
MMKINFPILDEPIEILDATILTVEDVTVFSNLVRQFYSYSEECDLKLFDEKLRSLKVSELLLVTDIFGFDVNSQSMLKLIHADLESQLNDKSEVKSMIEQLANTITELLSYECLENELDLEYDEITILELIKALGVKIETQSDTIFEKCFEILQIYNYLSKKKLLIFVNSGAYLTKNEMKKLIEYIKLSNQKVIFLEPRRLYDFPQYVLDSDYFLIAENMN
>NZ_CP054015.1|WP_009854538.1|44554_44899_-|CRISPR-associated-endonuclease-Cas2
MSYRYMRMILMFDMPTETAEERKAYRKFRKFLLSEGFIMHQFSVYSKLLLNNSANKAMIDRLQANNPKKGSITLLTVTEKQFARMIYLNGERNTSVANSDRRLVFLGEDYSDEN
>NZ_CP054015.1|WP_009854539.1|44895_45762_-|type-II-CRISPR-associated-endonuclease-Cas1
MGWRTVIVNEHSKLSYKNNHLIFKDAYHTEMIHLEEIDILLLETTNIVLTTMLIERLVERNILIIFCDEKRLPTAMLTPYYGRHDSSLQLTNQIAWDDDVKCDVWTTIIAQKILNQSMYLGECSFFEKSQSIMELYHGLEPFDPSNREGHSARIYFNTLFGNDFSREQDNDINAGLDYGYTLLLSMFARELVVCGCMTQFGLKHANQFNQFNLASDIMEPFRPIVDRIVYENRNASFVKIKRELFTMFDETYSYNNKEMFLNNIVSDYTKKVVKALNHGGKGVPEFRI
>NZ_CP054015.1|WP_009854540.1|45761_49874_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MTKKNYSIGLDIGTNSVGWAVITDDYKVPAKKMKVLGNTDKKYIKKNLLGALLFDSGETAEATRLKRTARRRYTRRKNRLRYLQEIFAEEMTKVDESFFYRLDESFLTTDEKDFERHPIFGNKAEEDAYHQKFPTIYHLRNYLADSSEKADLRLVYLALAHMIKYRGHFLIEGKLNAENTDVQKLFTDFVGVYDRTFDDSHLSEITVDVASTLTEKISKSRRLENLIKYYPTEKKNTLFGNLIALALGLQPNFKMNFKLSEDAKLQFSKDTYEEDLEELLGKIGDDYADLFTSAKNLYDAILLSGILTVDDNSTKAPLSASMIKRYVEHHEDLEKLKEFIKANKSELYHDIFKDKNKNGYAGYIENGVKQDEFYKYLKNTLSKIDGSDYFLDKIEREDFLRKQRTFDNGSIPHQIHLQEMHAILRRQGDYYPFLKEKQDRIEKILTFRIPYYVGPLVRKDSRFAWAEYRSDEKITPWNFDKVIDKEKSAEKFITRMTLNDLYLPEEKVLPKHSHVYETYAVYNELTKIKYVNEQGKESFFDSNMKQEIFDHVFKENRKVTKEKLLNYLNKEFPEYRIKDLIGLDKENKSFNASLGTYHDLKKILDKAFLDDKVNEEVIEDIIKTLTLFEDKDMIHERLQKYSDIFTANQLKKLERRHYTGWGRLSYKLINGIRNKENNKTILDYLIDDGSANRNFMQLINDDTLPFKQIIQKSQVVGDVDDIEAVVHDLPGSPAIKKGILQSVKIVDELVKVMGDNPDNIVIEMARENQTTNRGRSQSQQRLKKLQSSLKELGSNILNEEKPSYIEDKVENSHLQNDQLFLYYIQNGKDMYTGDELDIDHLSDYDIDHIIPQAFIKDDSIDNRVLTSSAKNRGKSDDVPSLDIVRARKAEWVRLYKSGLISKRKFDNLTKAERGGLTEADKAGFIKRQLVETRQITKHVAQILDARFNTEHDENDKVIRDVKVITLKSNLVSQFRKDFEFYKVREINDYHHAHDAYLNAVVGTALLKKYPKLASEFVYGEYKKYDIRKFITNSSDKATAKYFFYSNLMNFFKTKVKYADGTVFERPIIETNADGEIAWNKQIDFEKVRKVLSYPQVNIVKKVETQTGGFSKESILPKGDSDKLIPRKTKKVYWDTKKYGGFDSPTVAYSVFVVADVEKGKAKKLKTVKELVGISIMERSFFEENPVEFLENKGYHNIREDKLIKLPKYSLFEFEGGRRRLLASASELQKGNEMVLPGYLVELLYHAHRADNFNSTEYLNYVSEHKKEFEKVLSCVEDFANLYVDVEKNLSKIRAVADSMDNFSIEEISNSFINLLTLTALGAPADFNFLGEKIPRKRYTSTKECLTATLIHQSITGLYETRIDLSKLGEE
>NZ_CP054015.1|WP_009854541.1|50431_50602_-|hypothetical-protein
MSLAWYYWLLFAVSWLFAILLWIKSTTIPQKWLKALFVICGLIAFALPFFWGWLVS
>NZ_CP054015.1|WP_009854542.1|50603_51299_-|TIGR01906-family-membrane-protein
MNGILMKNKLWTFSTWLWLLALAVLVAIYGAWLIYPLEVDWLKLTLQVTITKDDLLKNFNILMTYLTNPLSHTLSMPDFPSSTDGLKHFRDVKHLFHLAQAVFVVLLYPSWRFWKNSRAEKSLFLHQRAFTLAAVLPVLIAVAGLLIGFDQFFTLFHEVLFPGDSTWLFNPATDPIIWVLPEEFFLHCFIIFFVTYEVIMIGLVVIARRQLAKRLQDQQKHPKTIKVERND
>NZ_CP054015.1|WP_012962176.1|51273_52047_-|TIGR01457-family-HAD-type-hydrolase
MTYKGYLIDLDGTIYKGKNRIPAGERFIQRLQERNIPYVLVTNNTTRTPEKVQEMLATQFNVHTPLETIYTATMATIDYMNDMNRGKTVYVIGETGLKTAIAEAGYVEDTENPAYVVVGLDTQLTYEMLAVATLAIQKGAVFIGTNPDLNIPTERGLMPGAGSINKLLETATRVQPVFIGKPNAIIMNKALDVLGVKREEAIMVGDNYLTDIMAGIQNDIATLLVTTGFTKPEEVPTLPVKPDHVLASLDEWNFDEK

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Crispr_ID: NZ_CP054015_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP054015_2

41540-43094

TypeII

II-A

Consensus_repeat	Method
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	PILER-CR
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CRISPRCasFinder
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CRT

23 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of NZ_CP054015_2

>merge|NZ_CP054015|2|41540-43094|PILER-CR,CRISPRCasFinder,CRT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACGAACCAAGCTTCGTAAATACACTCGATTGTGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACCGTTATAGATGTCTTGGGTTATTTGTAAAAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACAAGACGACACAATTTTTAATTATGGTTTAGGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTGTTATTCATTTTTAAAGAGAAGTGATAGTGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACGATAGCAATTCGTCAAATTTATTTTTAGGAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACAAAGTTTGCAATAGTTTAACACCTGCGTCAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTTTTGATTATTTCAAACGTTTTGGAGATGAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACATTGATGTTAGAATTCATGGGTCAAACAATGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACATACTGAATTATCTTTTGATTTGTCATTATGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACCGTGCGAAATACATATACGCAAAGAAAATCGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACATTCCTAGCAATTGGGAAAATATGTCAGCAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTCATTTTGTCTTGTAAGGTAAAATGTCGGAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACAGAAGTGAATGATTATATTCGAAATTCGTAGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTGAATATTATCAAGAAGAGCAACTTTACTAGGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTGTGTATACGTCATTATAACATCAATAATCGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACACTCACTAACGACTTTGAAATCATTGACTTGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTATTTTGCATGTCTGTGAACAACGTGTCTTGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACAGCCCTTCCATCTTATCTTTTACTGAATTGGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTTAAAATGCAACGTTTTGGAAATTGGCACGGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACTGAATATATGCTTTAACAGAAACGTTATTTGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACACGTTAACGACAGATAATAGCACATCACCGGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACACTTGTCCAGTACCACCTCCACCACTGGATGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAACAATTTTCCATAATATCGACGTAAAATGTTTGTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC

>NZ_CP054015|2|2|41540-43094|PILER-CR
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GAACCAAGCTTCGTAAATACACTCGATTGT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CGTTATAGATGTCTTGGGTTATTTGTAAAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AAGACGACACAATTTTTAATTATGGTTTAG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TGTTATTCATTTTTAAAGAGAAGTGATAGT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GATAGCAATTCGTCAAATTTATTTTTAGGA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AAAGTTTGCAATAGTTTAACACCTGCGTCA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TTTTGATTATTTCAAACGTTTTGGAGATGA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATTGATGTTAGAATTCATGGGTCAAACAAT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATACTGAATTATCTTTTGATTTGTCATTAT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CGTGCGAAATACATATACGCAAAGAAAATC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATTCCTAGCAATTGGGAAAATATGTCAGCA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCATTTTGTCTTGTAAGGTAAAATGTCGGA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AGAAGTGAATGATTATATTCGAAATTCGTA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TGAATATTATCAAGAAGAGCAACTTTACTAG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TGTGTATACGTCATTATAACATCAATAATC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACTCACTAACGACTTTGAAATCATTGACTT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TATTTTGCATGTCTGTGAACAACGTGTCTT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AGCCCTTCCATCTTATCTTTTACTGAATTG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TTAAAATGCAACGTTTTGGAAATTGGCACG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TGAATATATGCTTTAACAGAAACGTTATTT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACGTTAACGACAGATAATAGCACATCACCG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACTTGTCCAGTACCACCTCCACCACTGGAT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AATTTTCCATAATATCGACGTAAAATGTTT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC

>NZ_CP054015|2|2|41540-43094|CRISPRCasFinder
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GAACCAAGCTTCGTAAATACACTCGATTGT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CGTTATAGATGTCTTGGGTTATTTGTAAAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AAGACGACACAATTTTTAATTATGGTTTAG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TGTTATTCATTTTTAAAGAGAAGTGATAGT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GATAGCAATTCGTCAAATTTATTTTTAGGA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AAAGTTTGCAATAGTTTAACACCTGCGTCA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TTTTGATTATTTCAAACGTTTTGGAGATGA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATTGATGTTAGAATTCATGGGTCAAACAAT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATACTGAATTATCTTTTGATTTGTCATTAT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CGTGCGAAATACATATACGCAAAGAAAATC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATTCCTAGCAATTGGGAAAATATGTCAGCA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCATTTTGTCTTGTAAGGTAAAATGTCGGA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AGAAGTGAATGATTATATTCGAAATTCGTA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TGAATATTATCAAGAAGAGCAACTTTACTAG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TGTGTATACGTCATTATAACATCAATAATC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACTCACTAACGACTTTGAAATCATTGACTT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TATTTTGCATGTCTGTGAACAACGTGTCTT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AGCCCTTCCATCTTATCTTTTACTGAATTG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TTAAAATGCAACGTTTTGGAAATTGGCACG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TGAATATATGCTTTAACAGAAACGTTATTT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACGTTAACGACAGATAATAGCACATCACCG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACTTGTCCAGTACCACCTCCACCACTGGAT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AATTTTCCATAATATCGACGTAAAATGTTT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC

>NZ_CP054015|2|1|41540-43094|CRT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GAACCAAGCTTCGTAAATACACTCGATTGT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CGTTATAGATGTCTTGGGTTATTTGTAAAA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AAGACGACACAATTTTTAATTATGGTTTAG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TGTTATTCATTTTTAAAGAGAAGTGATAGT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	GATAGCAATTCGTCAAATTTATTTTTAGGA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AAAGTTTGCAATAGTTTAACACCTGCGTCA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TTTTGATTATTTCAAACGTTTTGGAGATGA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATTGATGTTAGAATTCATGGGTCAAACAAT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATACTGAATTATCTTTTGATTTGTCATTAT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	CGTGCGAAATACATATACGCAAAGAAAATC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ATTCCTAGCAATTGGGAAAATATGTCAGCA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TCATTTTGTCTTGTAAGGTAAAATGTCGGA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AGAAGTGAATGATTATATTCGAAATTCGTA
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TGAATATTATCAAGAAGAGCAACTTTACTAG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TGTGTATACGTCATTATAACATCAATAATC
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACTCACTAACGACTTTGAAATCATTGACTT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TATTTTGCATGTCTGTGAACAACGTGTCTT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AGCCCTTCCATCTTATCTTTTACTGAATTG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TTAAAATGCAACGTTTTGGAAATTGGCACG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	TGAATATATGCTTTAACAGAAACGTTATTT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACGTTAACGACAGATAATAGCACATCACCG
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	ACTTGTCCAGTACCACCTCCACCACTGGAT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC	AATTTTCCATAATATCGACGTAAAATGTTT
GTTTTGGAACCATTCGAAACAGCACAGCTCTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054015.1\|WP_009854538.1\|44554_44899_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
NZ_CP054015.1\|WP_009854539.1\|44895_45762_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
NZ_CP054015.1\|WP_009854522.1\|31078_31552_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP054015.1\|WP_012962176.1\|51273_52047_-\|TIGR01457-family-HAD-type-hydrolase	unknown	unknown	gnl\|CDD\|319832
NZ_CP054015.1\|WP_009854529.1\|36536_37013_-\|shikimate-kinase	unknown	unknown	gnl\|CDD\|234654
NZ_CP054015.1\|WP_009854536.1\|43618_43807_-\|type-II-toxin-antitoxin-system-HicA-family-toxin	unknown	unknown	gnl\|CDD\|377942
NZ_CP054015.1\|WP_043878582.1\|52107_52731_-\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|240029
NZ_CP054015.1\|WP_009854540.1\|45761_49874_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	COG3513_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226044
NZ_CP054015.1\|WP_009854542.1\|50603_51299_-\|TIGR01906-family-membrane-protein	unknown	unknown	gnl\|CDD\|226884
NZ_CP054015.1\|WP_009854526.1\|33794_34028_-\|AbrB-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225215
NZ_CP054015.1\|WP_009854523.1\|31850_33212_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|225174
NZ_CP054015.1\|WP_009854528.1\|35715_36540_-\|prephenate-dehydratase	unknown	unknown	gnl\|CDD\|237013
NZ_CP054015.1\|WP_003065532.1\|38510_40346_-\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
NZ_CP054015.1\|WP_009854541.1\|50431_50602_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054015.1\|WP_009854531.1\|40980_41397_-\|nucleoside-diphosphate-kinase	unknown	unknown	gnl\|CDD\|179085
NZ_CP054015.1\|WP_172855736.1\|43902_44568_-\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd09758_csn2_CAS-II-A	gnl\|CDD\|213408
NZ_CP054015.1\|WP_043878580.1\|37005_38289_-\|3-phosphoshikimate-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|235037
NZ_CP054015.1\|WP_013643274.1\|30264_30783_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054015.1\|WP_009854535.1\|43226_43607_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|374224
NZ_CP054015.1\|WP_009854527.1\|34186_35629_-\|LCP-family-protein	unknown	unknown	gnl\|CDD\|224235

Protein	Function_ID	Function_description	E-value
NZ_CP054015.1\|WP_009854538.1\|44554_44899_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.71482e-48
NZ_CP054015.1\|WP_009854539.1\|44895_45762_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	7.46732e-130
NZ_CP054015.1\|WP_009854522.1\|31078_31552_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.09298e-15
NZ_CP054015.1\|WP_012962176.1\|51273_52047_-\|TIGR01457-family-HAD-type-hydrolase	gnl\|CDD\|319832	cd07530, HAD_Pase_UmpH-like, UmpH/NagD family phosphatase, similar to Escherichia coli UmpH UMP phosphatase/NagD nucleotide phosphatase and Mycobacterium tuberculosis Rv1692 glycerol 3-phosphate phosphatase. Escherichia coli UmpH/NagD is a ribonucleoside tri-, di-, and monophosphatase with a preference for purines, it shows peak activity with UMP and functions in UMP-degradation. It is also an effective phosphatase with AMP, GMP and CMP. Mycobacterium tuberculosis phosphatase, Rv1692 is a glycerol 3-phosphate phosphatase. Rv1692 is the final enzyme involved in glycerophospholipid recycling/catabolism. This subfamily belongs to the UmpH/NagD phosphatase family, and to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	1.09682e-129
NZ_CP054015.1\|WP_009854529.1\|36536_37013_-\|shikimate-kinase	gnl\|CDD\|234654	PRK00131, aroK, shikimate kinase; Reviewed.	2.50906e-59
NZ_CP054015.1\|WP_009854536.1\|43618_43807_-\|type-II-toxin-antitoxin-system-HicA-family-toxin	gnl\|CDD\|377942	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,. HicA_toxin is a bacterial family of toxins that act as mRNA interferases. The antitoxin that neutralizes this is family HicB, pfam15919.	8.16808e-15
NZ_CP054015.1\|WP_043878582.1\|52107_52731_-\|NUDIX-hydrolase	gnl\|CDD\|240029	cd04672, Nudix_Hydrolase_14, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	1.32688e-58
NZ_CP054015.1\|WP_009854540.1\|45761_49874_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|226044	COG3513, COG3513, Predicted CRISPR-associated nuclease, contains McrA/HNH-nuclease and RuvC-like nuclease domain [Defense mechanisms].	0
NZ_CP054015.1\|WP_009854542.1\|50603_51299_-\|TIGR01906-family-membrane-protein	gnl\|CDD\|226884	COG4478, COG4478, Predicted membrane protein [Function unknown].	2.06699e-66
NZ_CP054015.1\|WP_009854526.1\|33794_34028_-\|AbrB-family-transcriptional-regulator	gnl\|CDD\|225215	COG2336, MazE, Growth regulator [Signal transduction mechanisms].	7.60191e-05
NZ_CP054015.1\|WP_009854523.1\|31850_33212_-\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	3.03591e-178
NZ_CP054015.1\|WP_009854528.1\|35715_36540_-\|prephenate-dehydratase	gnl\|CDD\|237013	PRK11898, PRK11898, prephenate dehydratase; Provisional.	1.56293e-150
NZ_CP054015.1\|WP_003065532.1\|38510_40346_-\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
NZ_CP054015.1\|WP_009854531.1\|40980_41397_-\|nucleoside-diphosphate-kinase	gnl\|CDD\|179085	PRK00668, ndk, mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated.	9.46762e-80
NZ_CP054015.1\|WP_172855736.1\|43902_44568_-\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	3.58428e-114
NZ_CP054015.1\|WP_043878580.1\|37005_38289_-\|3-phosphoshikimate-1-carboxyvinyltransferase	gnl\|CDD\|235037	PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional.	0
NZ_CP054015.1\|WP_009854535.1\|43226_43607_-\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|374224	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	2.96722e-17
NZ_CP054015.1\|WP_009854527.1\|34186_35629_-\|LCP-family-protein	gnl\|CDD\|224235	COG1316, LytR, Transcriptional regulator [Transcription].	5.63463e-55

>NZ_CP054015.1|WP_009854531.1|40980_41397_-|nucleoside-diphosphate-kinase
MEKTFFMIKPDGVRRGLVGEVLHRIERRGFTIEKLEMRMATPELLEKHYADLVDRPFFPLIVDFMTSGPVITGVMSGNEVITSWRTMMGATNPKEALPGTIRGDYAQAPDEGGATFNIVHGSDSPESVEREIALWFGE
>NZ_CP054015.1|WP_003065532.1|38510_40346_-|elongation-factor-4
MDIQELKKRQEKIRNFSIIAHIDHGKSTLADRILEKTETVSSREMQAQLLDSMDLERERGITIKLNAIELNYTAKDGETYIFHLIDTPGHVDFSYEVSRSLAACEGAILVVDAAQGIEAQTLANVYLALDNDLEILPVINKIDLPAADPERVRQEIEDVIGLDASEAVLASAKAGIGIEEILEQIVEYVPAPAGDVEAPLQALIFDSVYDAYRGVILQVRIVNGMVKPGDKIQLMSNGKTFDVTEVGIFTPKAVGRDFLATGDVGYIAASIKTVADTRVGDTVTLAENPAEAPLHGYKQMNPMVFAGLYPIESNKYNDLREALEKLQLNDASLQFEPETSQALGFGFRCGFLGLLHMDVIQERLEREFNIDLIMTAPSVVYHVNTTDGEMLEVSNPSEFPDPTKVASIEEPYVKAQIMVPQEFVGAVMELAQRKRGDFVTMDYIDENRVNVIYQIPLAEIVFDFFDKLKSSTRGYASFDYEISEYRKSKLVKMDILLNGDKVDALSFIVHNEFAYERGKLIVEKLKKIIPRQQFEVPIQAAIGQKIVARSDIKALRKNVLAKCYGGDVSRKRKLLEKQKAGKKRMKAIGSVEVPQEAFLSVLSMDDDNSKK
>NZ_CP054015.1|WP_043878580.1|37005_38289_-|3-phosphoshikimate-1-carboxyvinyltransferase
MKLLTNVSQLKGTLRVPGDKSISHRSIMFGSLAKGTTTVHDILRGEDVLSTMQVFRDLGVDIQDDGNIVTITGVGFDGLKAPKNKLDMGNSGTSIRLISGVLAGQDFTVEMFGDDSLSKRPMDRVIIPLRQMGVEVSGQTDRDLPPLTMRGSKALKPIHYQLPVASAQVKSALIFAALQADGESVIIEKEKTRNHTEDMIVQFGGAIDVNGKEIRIKGGQEFTGQDVVVPGDISSAAFWLVAGLIVPNAKVTLENVGINETRTGIIDVIKEMGGKMTISNVDEIAKSATITVETSELHGVEIGGEIIPRLIDELPIIALLATQANGTTIIRDAEELKVKETDRIQVVADALNAMGADITPTDDGMIIKGKTPLHGAKVNTFGDHRIGMMTAIAALLVSDGDVELERAEAINTSYPSFFNDLEVLSRG
>NZ_CP054015.1|WP_009854529.1|36536_37013_-|shikimate-kinase
MARIIIGFMGSGKSTISSLLDENYIDMDALITERIGMSIADFFAKEGEAKFREIESQVLAELADSDQVISTGGGVVINPINREILAKNPETIYLKSDFETLYDRIEHDTENVRPLFVNNSKEAFKEIFDGRQEMYETAANRIIDVAGKTPEEIVEEIG
>NZ_CP054015.1|WP_009854528.1|35715_36540_-|prephenate-dehydratase
MKVGYLGPSGSFTHNVAVKAFPEANRMPFANITEVIKSYEEGFVDYAIIPVENSIEGSVHETLDYLFHQAEIEAIAEIIQPIKQQLLATTQTKKIEKIFSHPQAIAQGKKYIKAHYPAAKIEMTASTAYAARFIAEHPEENFAAIAPVAAAKEYGLEIIAQDIQEMDENYTRFWVLGHQKWSFDLAKLNQKVSLALTLPDNLPGALYKALSVFAWRGIDLTKIESRPLKTALGEYFFIVDVENKNDTLVSFALEELSVLGIGYKILGRYDVYKL
>NZ_CP054015.1|WP_009854527.1|34186_35629_-|LCP-family-protein
MARSNLSRHEELRYEYLLSNLEYLSAREKQEFDYLYNKKQASEVSEPPRSQPSSAYNDNYYGDYYDDAYDNQVDYYDDDNWTSQGLPKYPEEKKQSKRSFRRTSEQQAEILPTYQDNYENYNEAFYQEPEPVTPKKAKKPKKKRRKIRIKRLLKLLGFLVILVMAGMIYMFFKGVNDVSSGETNYTAAVTETFNGEDSDDGTNILILGSDQRITQGSSDARTDTIMVMNIGNSDGKIKLVSFMRDTLVNIDGVSYNAYSNDQKLNVAFNIGEQDDNQGAELMRQTLKDNFDINIKYYVMVDFETFAEAIDTLFPNGVEIDAKFGTVDGQAVSSVEVPDDLNMQADGTVPNQTIEVGTQKMDGRTLLNYARFRKDDDGDYGRTQRQQQVISAIINQIKDPSKLFTGSAAIGKIYALTSTNISYPFLLKEGLSVITSGQEGIEQTTIPAEGDWTDDYDMYGGLGIAIDFDKYQEELKELGLR
>NZ_CP054015.1|WP_009854526.1|33794_34028_-|AbrB-family-transcriptional-regulator
MIVKSRKQGNSLMITIPSYLNVPEGTEYEVKASANGELIFSPVEKSKREFATNEDISAITDDIFKDYDDVFKELVDK
>NZ_CP054015.1|WP_009854523.1|31850_33212_-|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MLSKNAIVDAEITDLSHEGAGVAKVDGFVFFVENALPGEKIKMRVLKVKKNIGFGKVEEYVTISEHRNQDLNVDYLRTGIADFGHLAYAEQLKFKRKQVMDNLYKTAGISDIEVSETLGMAHPYAYRNKAQVPVRRVNGQLETGFFRKHSHDLMPISDYYIQNKEIDRLINFTRDLLRRFDLKPYDEKEQTGLIRNLVVRRGHYSGKMMLVFVTTRPKIFRIEQIIEKIVAEFPAVKSIVQNINDKNTNVIFGNEFKTLYGKDTIIDSMLGNQYEISARSFYQVNTEMAERLYQTAIDFSDLTPEDIVIDAYSGIGTIGLSFAKNVKAVYGVEVIEEAVEDAKRNAALNGITNAHYVADSAEHAMATWSKDGIKPSVILVDPPRKGLTENFIKASVAMQPEKITYISCNPASMARDIKLYQELGYKLIKVQPVDLFPNTHHVETVVLMSRVER
>NZ_CP054015.1|WP_009854522.1|31078_31552_-|GNAT-family-N-acetyltransferase
MKIETYKGKYDDEIISLILDIQNNEAKINLSLQEQPDLIDISRFYQQDGGEFWIALSDEKVVGTIGLMLKENQCAILKKFFVHKDFRSKKVGLSLYNALLKYAKEIDIQHIILDTPSVATASHRFYERAGFHIISMEELPIPYTYPDRDSILYMLDF
>NZ_CP054015.1|WP_013643274.1|30264_30783_-|hypothetical-protein
MGLLDFFKKKKRLTSSDVLDDESYIKEIRHCSQEAWHQYDVLLAARGYGWKGMVDWASYMNKADLMNISTITYSSLPGSKEIECIESFRQNENDFFKMQELKDEQSSLAVGGESKTLKVPIKIVWFNQTRTLRFFTLFLDDEKLMERYIETMIRRTFLTADAMKLAKSGRID
>NZ_CP054015.1|WP_009854535.1|43226_43607_-|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MLKSYPAIFHKEDDGSFWVEFPGFGGGTEGDDVEEAMKNAREMLESSLAAYLDEGLELPKVVNMSELSVEDGFITLIQADPSPYLKSTKAIRKNVTVPEWLVRLADRENVNYSEVLTQALEKKLQL
>NZ_CP054015.1|WP_009854536.1|43618_43807_-|type-II-toxin-antitoxin-system-HicA-family-toxin
MPLTGRELAKLAVLKGWKEVRVKGSHHQFKKDGVPYILTIPIHGNKVLGVGLEKKILKDIGL
>NZ_CP054015.1|WP_172855736.1|43902_44568_-|type-II-A-CRISPR-associated-protein-Csn2
MMKINFPILDEPIEILDATILTVEDVTVFSNLVRQFYSYSEECDLKLFDEKLRSLKVSELLLVTDIFGFDVNSQSMLKLIHADLESQLNDKSEVKSMIEQLANTITELLSYECLENELDLEYDEITILELIKALGVKIETQSDTIFEKCFEILQIYNYLSKKKLLIFVNSGAYLTKNEMKKLIEYIKLSNQKVIFLEPRRLYDFPQYVLDSDYFLIAENMN
>NZ_CP054015.1|WP_009854538.1|44554_44899_-|CRISPR-associated-endonuclease-Cas2
MSYRYMRMILMFDMPTETAEERKAYRKFRKFLLSEGFIMHQFSVYSKLLLNNSANKAMIDRLQANNPKKGSITLLTVTEKQFARMIYLNGERNTSVANSDRRLVFLGEDYSDEN
>NZ_CP054015.1|WP_009854539.1|44895_45762_-|type-II-CRISPR-associated-endonuclease-Cas1
MGWRTVIVNEHSKLSYKNNHLIFKDAYHTEMIHLEEIDILLLETTNIVLTTMLIERLVERNILIIFCDEKRLPTAMLTPYYGRHDSSLQLTNQIAWDDDVKCDVWTTIIAQKILNQSMYLGECSFFEKSQSIMELYHGLEPFDPSNREGHSARIYFNTLFGNDFSREQDNDINAGLDYGYTLLLSMFARELVVCGCMTQFGLKHANQFNQFNLASDIMEPFRPIVDRIVYENRNASFVKIKRELFTMFDETYSYNNKEMFLNNIVSDYTKKVVKALNHGGKGVPEFRI
>NZ_CP054015.1|WP_009854540.1|45761_49874_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MTKKNYSIGLDIGTNSVGWAVITDDYKVPAKKMKVLGNTDKKYIKKNLLGALLFDSGETAEATRLKRTARRRYTRRKNRLRYLQEIFAEEMTKVDESFFYRLDESFLTTDEKDFERHPIFGNKAEEDAYHQKFPTIYHLRNYLADSSEKADLRLVYLALAHMIKYRGHFLIEGKLNAENTDVQKLFTDFVGVYDRTFDDSHLSEITVDVASTLTEKISKSRRLENLIKYYPTEKKNTLFGNLIALALGLQPNFKMNFKLSEDAKLQFSKDTYEEDLEELLGKIGDDYADLFTSAKNLYDAILLSGILTVDDNSTKAPLSASMIKRYVEHHEDLEKLKEFIKANKSELYHDIFKDKNKNGYAGYIENGVKQDEFYKYLKNTLSKIDGSDYFLDKIEREDFLRKQRTFDNGSIPHQIHLQEMHAILRRQGDYYPFLKEKQDRIEKILTFRIPYYVGPLVRKDSRFAWAEYRSDEKITPWNFDKVIDKEKSAEKFITRMTLNDLYLPEEKVLPKHSHVYETYAVYNELTKIKYVNEQGKESFFDSNMKQEIFDHVFKENRKVTKEKLLNYLNKEFPEYRIKDLIGLDKENKSFNASLGTYHDLKKILDKAFLDDKVNEEVIEDIIKTLTLFEDKDMIHERLQKYSDIFTANQLKKLERRHYTGWGRLSYKLINGIRNKENNKTILDYLIDDGSANRNFMQLINDDTLPFKQIIQKSQVVGDVDDIEAVVHDLPGSPAIKKGILQSVKIVDELVKVMGDNPDNIVIEMARENQTTNRGRSQSQQRLKKLQSSLKELGSNILNEEKPSYIEDKVENSHLQNDQLFLYYIQNGKDMYTGDELDIDHLSDYDIDHIIPQAFIKDDSIDNRVLTSSAKNRGKSDDVPSLDIVRARKAEWVRLYKSGLISKRKFDNLTKAERGGLTEADKAGFIKRQLVETRQITKHVAQILDARFNTEHDENDKVIRDVKVITLKSNLVSQFRKDFEFYKVREINDYHHAHDAYLNAVVGTALLKKYPKLASEFVYGEYKKYDIRKFITNSSDKATAKYFFYSNLMNFFKTKVKYADGTVFERPIIETNADGEIAWNKQIDFEKVRKVLSYPQVNIVKKVETQTGGFSKESILPKGDSDKLIPRKTKKVYWDTKKYGGFDSPTVAYSVFVVADVEKGKAKKLKTVKELVGISIMERSFFEENPVEFLENKGYHNIREDKLIKLPKYSLFEFEGGRRRLLASASELQKGNEMVLPGYLVELLYHAHRADNFNSTEYLNYVSEHKKEFEKVLSCVEDFANLYVDVEKNLSKIRAVADSMDNFSIEEISNSFINLLTLTALGAPADFNFLGEKIPRKRYTSTKECLTATLIHQSITGLYETRIDLSKLGEE
>NZ_CP054015.1|WP_009854541.1|50431_50602_-|hypothetical-protein
MSLAWYYWLLFAVSWLFAILLWIKSTTIPQKWLKALFVICGLIAFALPFFWGWLVS
>NZ_CP054015.1|WP_009854542.1|50603_51299_-|TIGR01906-family-membrane-protein
MNGILMKNKLWTFSTWLWLLALAVLVAIYGAWLIYPLEVDWLKLTLQVTITKDDLLKNFNILMTYLTNPLSHTLSMPDFPSSTDGLKHFRDVKHLFHLAQAVFVVLLYPSWRFWKNSRAEKSLFLHQRAFTLAAVLPVLIAVAGLLIGFDQFFTLFHEVLFPGDSTWLFNPATDPIIWVLPEEFFLHCFIIFFVTYEVIMIGLVVIARRQLAKRLQDQQKHPKTIKVERND
>NZ_CP054015.1|WP_012962176.1|51273_52047_-|TIGR01457-family-HAD-type-hydrolase
MTYKGYLIDLDGTIYKGKNRIPAGERFIQRLQERNIPYVLVTNNTTRTPEKVQEMLATQFNVHTPLETIYTATMATIDYMNDMNRGKTVYVIGETGLKTAIAEAGYVEDTENPAYVVVGLDTQLTYEMLAVATLAIQKGAVFIGTNPDLNIPTERGLMPGAGSINKLLETATRVQPVFIGKPNAIIMNKALDVLGVKREEAIMVGDNYLTDIMAGIQNDIATLLVTTGFTKPEEVPTLPVKPDHVLASLDEWNFDEK
>NZ_CP054015.1|WP_043878582.1|52107_52731_-|NUDIX-hydrolase
MTVDDKKWVDWLVRLQSLAQAGLAYGRDKYDIERFKEIREIAVAMMAELSQLPAQKVADLFANETGYQTPKIDTRAAIFQDDKILLVQEANGKWALPGGWCDVDQSVAENTLKEVKEEAGLDVELERVIAIQDREKHNQPVSAHKICKIFSLCHAKGGHFTKNLETIASGYFACDNLPELAESKTTKEQIAMCFTAYYDENWKTLID

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP054015_2	2.3\|41708\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	41708-41737	30	MK448879	Streptococcus phage Javan226, complete genome	10575-10604	0	1.0
NZ_CP054015_2	2.3\|41708\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	41708-41737	30	MK448878	Streptococcus phage Javan224, complete genome	12943-12972	0	1.0
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	MK448931	Streptococcus phage Javan414, complete genome	5075-5104	0	1.0
NZ_CP054015_1	1.4\|40765\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder	40765-40794	30	NZ_KX579977	Enterococcus faecalis strain EF123 plasmid pEF123, complete sequence	23130-23159	1	0.967
NZ_CP054015_1	1.5\|40831\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder	40831-40860	30	NZ_KX579977	Enterococcus faecalis strain EF123 plasmid pEF123, complete sequence	23130-23159	1	0.967
NZ_CP054015_1	1.4\|40765\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder	40765-40794	30	NC_015219	Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069 plasmid pSGG1, complete sequence	5911-5940	2	0.933
NZ_CP054015_1	1.5\|40831\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder	40831-40860	30	NC_015219	Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069 plasmid pSGG1, complete sequence	5911-5940	2	0.933
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	MN694619	Marine virus AFVG_250M660, complete genome	49466-49495	3	0.9
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	MN693646	Marine virus AFVG_250M659, complete genome	49453-49482	3	0.9
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	MN694157	Marine virus AFVG_250M658, complete genome	49453-49482	3	0.9
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	MK448816	Streptococcus phage Javan589, complete genome	6851-6880	4	0.867
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	MK448984	Streptococcus phage Javan562, complete genome	6851-6880	4	0.867
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	MK448985	Streptococcus phage Javan566, complete genome	8027-8056	4	0.867
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	MK448987	Streptococcus phage Javan576, complete genome	7177-7206	5	0.833
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	NC_010945	Streptococcus phage PH15, complete genome	6881-6910	5	0.833
NZ_CP054015_2	2.13\|42368\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42368-42397	30	NZ_CP032488	Yersinia hibernica strain CFS1934 plasmid pCFS1934, complete sequence	56936-56965	5	0.833
NZ_CP054015_2	2.19\|42765\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42765-42794	30	NZ_LR214939	Mycoplasma salivarium strain NCTC10113 plasmid 2	237220-237249	5	0.833
NZ_CP054015_2	2.4\|41774\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	41774-41803	30	NZ_CP029750	Staphylococcus aureus strain Smith plasmid pSS41, complete sequence	28822-28851	6	0.8
NZ_CP054015_2	2.5\|41840\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	41840-41869	30	NC_007483	Nitrosococcus oceani ATCC 19707 plasmid A, complete sequence	38195-38224	6	0.8
NZ_CP054015_2	2.5\|41840\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	41840-41869	30	MN694652	Marine virus AFVG_250M647, complete genome	38371-38400	6	0.8
NZ_CP054015_2	2.5\|41840\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	41840-41869	30	MN693010	Marine virus AFVG_117M73, complete genome	620-649	6	0.8
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	MN855726	Bacteriophage sp. isolate 241, complete genome	215-244	6	0.8
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	NC_047926	Lactobacillus phage Semele, complete genome	87122-87151	6	0.8
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	NZ_LR215040	Mycoplasma columborale strain NCTC10179 plasmid 2	10159-10188	6	0.8
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	MG557979	Lactobacillus phage Lpa804, complete genome	53580-53609	6	0.8
NZ_CP054015_2	2.22\|42963\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42963-42992	30	MN694181	Marine virus AFVG_250M537, complete genome	26183-26212	6	0.8
NZ_CP054015_2	2.2\|41642\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	41642-41671	30	JQ340088	Halocynthia phage JM-2012, complete genome	7825-7854	7	0.767
NZ_CP054015_2	2.4\|41774\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	41774-41803	30	NZ_CP011152	Bacillus cereus strain CMCC P0021 plasmid pRML04, complete sequence	1635-1664	7	0.767
NZ_CP054015_2	2.4\|41774\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	41774-41803	30	NZ_CP044979	Bacillus thuringiensis strain BT62 plasmid pBT62A, complete sequence	189369-189398	7	0.767
NZ_CP054015_2	2.4\|41774\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	41774-41803	30	NZ_CP011154	Bacillus cereus strain CMCC P0011 plasmid pRML05, complete sequence	545253-545282	7	0.767
NZ_CP054015_2	2.5\|41840\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	41840-41869	30	NZ_CP021878	Enterococcus wangshanyuanii strain MN05 plasmid unnamed5	43781-43810	7	0.767
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	NZ_CP015326	Bacillus filamentosus strain Hbe603 plasmid pBEH4, complete sequence	43678-43707	7	0.767
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	NZ_KU525621	Bacillus anthracis strain P.NO2 plasmid pXO2, complete sequence	82489-82518	7	0.767
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	NC_014332	Bacillus cereus biovar anthracis str. CI plasmid pCI-XO2, complete sequence	83260-83289	7	0.767
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	NC_012577	Bacillus anthracis str. CDC 684 plasmid pX02, complete sequence	81140-81169	7	0.767
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	NZ_CP015778	Bacillus anthracis strain Tangail-1 plasmid pXO2, complete sequence	82724-82753	7	0.767
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	NZ_CP018905	Bacillus anthracis strain Tyrol 4675 plasmid pXO2, complete sequence	83053-83082	7	0.767
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	NZ_CP023003	Bacillus anthracis strain 14RA5914 plasmid pX02, complete sequence	18113-18142	7	0.767
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	NZ_AP019733	Bacillus anthracis strain PCr plasmid PCr-pXO2	23954-23983	7	0.767
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	NZ_AP018445	Bacillus anthracis strain CZC5 plasmid pXO2, complete sequence	82696-82725	7	0.767
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	NZ_CP029325	Bacillus anthracis strain 17OD930 plasmid pXO2, complete sequence	70994-71023	7	0.767
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	NC_012655	Bacillus anthracis str. A0248 plasmid pXO2, complete sequence	83767-83796	7	0.767
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	NC_007323	Bacillus anthracis str. 'Ames Ancestor' plasmid pXO2, complete sequence	82724-82753	7	0.767
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	NZ_CP010854	Bacillus anthracis strain A1144 plasmid pXO2, complete sequence	82877-82906	7	0.767
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	NZ_CP007617	Bacillus anthracis strain 2000031021 plasmid pXO2, complete sequence	58284-58313	7	0.767
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	NZ_CP008848	Bacillus anthracis strain HYU01 plasmid pX02, complete sequence	82628-82657	7	0.767
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	NZ_CP006744	Bacillus anthracis str. SVA11 plasmid pXO2, complete sequence	82654-82683	7	0.767
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	NZ_AP014835	Bacillus anthracis strain Shikan-NIID plasmid pXO2	82714-82743	7	0.767
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	NZ_CP029807	Bacillus anthracis strain London_499 plasmid pX02, complete sequence	82853-82882	7	0.767
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	NZ_CP024492	Klebsiella pneumoniae strain INF249 plasmid unnamed3, complete sequence	3854-3883	7	0.767
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	NC_002146	Bacillus anthracis plasmid pXO2, complete sequence	83198-83227	7	0.767
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	NC_017727	Bacillus anthracis str. H9401 plasmid BAP2, complete sequence	82711-82740	7	0.767
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	NZ_CP009314	Bacillus anthracis str. Turkey32 strain 35 plasmid unnamed, complete sequence	89549-89578	7	0.767
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	NZ_CP014178	Bacillus anthracis strain Stendal plasmid pXO2, complete sequence	82724-82753	7	0.767
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	NZ_CP009475	Bacillus anthracis strain Pasteur plasmid pXO2, complete sequence	10490-10519	7	0.767
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	NZ_CP009900	Bacillus anthracis strain 2002013094 plasmid pXO2, complete sequence	67740-67769	7	0.767
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	NZ_CP009339	Bacillus anthracis strain Ohio ACB plasmid 2, complete sequence	7192-7221	7	0.767
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	NZ_CP009462	Bacillus anthracis strain SK-102 plasmid pXO2, complete sequence	15429-15458	7	0.767
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	NZ_CP009698	Bacillus anthracis strain BA1035 plasmid pXO2, complete sequence	79906-79935	7	0.767
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	NZ_CP009329	Bacillus anthracis strain K3 plasmid 2, complete sequence	22168-22197	7	0.767
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	NZ_CP001972	Bacillus anthracis str. A16 plasmid pXO2, complete sequence	82726-82755	7	0.767
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	NZ_CP047133	Bacillus anthracis str. BF1 plasmid pXO2, complete sequence	82638-82667	7	0.767
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	JN638751	Bacillus phage G, complete genome	151668-151697	7	0.767
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	NZ_CP031819	Klebsiella pneumoniae strain INF235-sc-2280127 plasmid unnamed2, complete sequence	1871-1900	7	0.767
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	NZ_CP009695	Bacillus anthracis strain RA3 plasmid pXO2, complete sequence	21088-21117	7	0.767
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	NZ_CP009542	Bacillus anthracis strain BA1015 plasmid pXO2, complete sequence	46636-46665	7	0.767
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	NZ_CP010320	Bacillus anthracis strain Canadian Bison isolate A0369 plasmid 2, complete sequence	17817-17846	7	0.767
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	NZ_CP009326	Bacillus anthracis strain Vollum 1B plasmid 2, complete sequence	46586-46615	7	0.767
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	NZ_CP009979	Bacillus anthracis strain Ames isolate BACI008 plasmid unnamed2, complete sequence	85586-85615	7	0.767
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	MN694048	Marine virus AFVG_250M379, complete genome	11872-11901	7	0.767
NZ_CP054015_2	2.15\|42501\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42501-42530	30	NZ_CP013227	Staphylococcus aureus strain UTSW MRSA 55 plasmid UTSW55_1, complete sequence	3287-3316	7	0.767
NZ_CP054015_2	2.22\|42963\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42963-42992	30	NZ_KP276584	Escherichia coli strain 39R861 plasmid p39R861-4, complete sequence	63931-63960	7	0.767
NZ_CP054015_2	2.22\|42963\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42963-42992	30	NC_012885	Aeromonas hydrophila plasmid pRA1, complete sequence	94155-94184	7	0.767
NZ_CP054015_2	2.22\|42963\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42963-42992	30	NZ_CP042536	Citrobacter freundii strain E51 plasmid pE51_002, complete sequence	92308-92337	7	0.767
NZ_CP054015_2	2.22\|42963\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42963-42992	30	NZ_CP034714	Salmonella enterica subsp. enterica serovar Mikawasima strain RSE15 plasmid pRSE15, complete sequence	91686-91715	7	0.767
NZ_CP054015_2	2.22\|42963\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42963-42992	30	NZ_CP012168	Enterobacter hormaechei subsp. steigerwaltii strain 34998 plasmid p34998-239.973kb, complete sequence	123570-123599	7	0.767
NZ_CP054015_2	2.22\|42963\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42963-42992	30	NZ_MG550958	Escherichia coli strain G3216 plasmid pG3216.2, complete sequence	124551-124580	7	0.767
NZ_CP054015_2	2.22\|42963\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42963-42992	30	NZ_MG053108	Citrobacter freundii strain 33587 plasmid pCf587, complete sequence	92925-92954	7	0.767
NZ_CP054015_2	2.22\|42963\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42963-42992	30	NZ_CP022425	Vitreoscilla filiformis strain ATCC 15551 plasmid pVF2, complete sequence	24236-24265	7	0.767
NZ_CP054015_2	2.22\|42963\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42963-42992	30	NC_031927	Synechococcus phage S-CAM7 isolate 0910CC49, complete genome	16066-16095	7	0.767
NZ_CP054015_2	2.2\|41642\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	41642-41671	30	NZ_CP025695	Lactobacillus plantarum strain IRG1 plasmid pIRG105, complete sequence	65-94	8	0.733
NZ_CP054015_2	2.2\|41642\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	41642-41671	30	NZ_CP037438	Lactobacillus plantarum strain EM plasmid pEM9, complete sequence	1230-1259	8	0.733
NZ_CP054015_2	2.2\|41642\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	41642-41671	30	NZ_CP053914	Lactobacillus plantarum subsp. plantarum strain G1 plasmid p2, complete sequence	4998-5027	8	0.733
NZ_CP054015_2	2.5\|41840\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	41840-41869	30	NC_009796	Campylobacter concisus 13826 plasmid pCCON16, complete sequence	28-57	8	0.733
NZ_CP054015_2	2.7\|41972\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	41972-42001	30	NZ_CP040853	Lactobacillus murinus strain V10 plasmid unnamed, complete sequence	98385-98414	8	0.733
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	MH319742	Marine virus AG-345-E15 Ga0172270_12 genomic sequence	8387-8416	8	0.733
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	NZ_CP022346	Bacillus thuringiensis strain c25 plasmid unnamed1, complete sequence	189415-189444	8	0.733
NZ_CP054015_2	2.11\|42236\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42236-42265	30	NZ_CP048351	Raoultella ornithinolytica strain 23 plasmid p23_B, complete sequence	7467-7496	8	0.733
NZ_CP054015_2	2.11\|42236\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42236-42265	30	NZ_CP026272	Klebsiella oxytoca strain KONIH4 plasmid pKPC-f607, complete sequence	95994-96023	8	0.733
NZ_CP054015_2	2.11\|42236\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42236-42265	30	NZ_CP007735	Klebsiella pneumoniae subsp. pneumoniae KPNIH27 plasmid pKPN-a41, complete sequence	72279-72308	8	0.733
NZ_CP054015_2	2.11\|42236\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42236-42265	30	NZ_CP022999	Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-A, complete sequence	1550460-1550489	8	0.733
NZ_CP054015_2	2.14\|42434\|31\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42434-42464	31	NZ_CP045275	Bacillus megaterium strain FDU301 plasmid pFDU301C, complete sequence	125246-125276	8	0.742
NZ_CP054015_2	2.14\|42434\|31\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42434-42464	31	NC_011774	Bacillus cereus G9842 plasmid pG9842_140, complete sequence	111969-111999	8	0.742
NZ_CP054015_2	2.14\|42434\|31\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42434-42464	31	MT162467	Synechococcus phage S-H34, complete genome	59722-59752	8	0.742
NZ_CP054015_2	2.16\|42567\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42567-42596	30	NC_014390	Butyrivibrio proteoclasticus B316 plasmid pCY186, complete sequence	96900-96929	8	0.733
NZ_CP054015_2	2.18\|42699\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42699-42728	30	NZ_CP016179	Vibrio breoganii strain FF50 plasmid unnamed1, complete sequence	208171-208200	8	0.733
NZ_CP054015_1	1.3\|40699\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder	40699-40728	30	MT774400	CrAssphage cr4_1, complete genome	80854-80883	9	0.7
NZ_CP054015_2	2.4\|41774\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	41774-41803	30	KM224879	Vibrio phage ICP2_2013_A_Haiti, complete genome	27032-27061	9	0.7
NZ_CP054015_2	2.14\|42434\|31\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42434-42464	31	LT960552	Yersinia phage fHe-Yen9-03 genome assembly, complete genome: monopartite	80832-80862	9	0.71
NZ_CP054015_2	2.22\|42963\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42963-42992	30	NC_016585	Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence	507325-507354	9	0.7
NZ_CP054015_2	2.9\|42104\|30\|NZ_CP054015\|PILER-CR,CRISPRCasFinder,CRT	42104-42133	30	AP018319	Nostoc sp. HK-01 plasmid plasmid1 DNA, complete genome	122885-122914	10	0.667

1. spacer 2.3|41708|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to MK448879 (Streptococcus phage Javan226, complete genome) position: , mismatch: 0, identity: 1.0

aagacgacacaatttttaattatggtttag	CRISPR spacer
aagacgacacaatttttaattatggtttag	Protospacer
******************************

2. spacer 2.3|41708|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to MK448878 (Streptococcus phage Javan224, complete genome) position: , mismatch: 0, identity: 1.0

aagacgacacaatttttaattatggtttag	CRISPR spacer
aagacgacacaatttttaattatggtttag	Protospacer
******************************

3. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to MK448931 (Streptococcus phage Javan414, complete genome) position: , mismatch: 0, identity: 1.0

atactgaattatcttttgatttgtcattat	CRISPR spacer
atactgaattatcttttgatttgtcattat	Protospacer
******************************

4. spacer 1.4|40765|30|NZ_CP054015|PILER-CR,CRISPRCasFinder matches to NZ_KX579977 (Enterococcus faecalis strain EF123 plasmid pEF123, complete sequence) position: , mismatch: 1, identity: 0.967

tttttggtctggagttatcttcccttgtga	CRISPR spacer
tttttggtctggagttatctttccttgtga	Protospacer
*********************.********

5. spacer 1.5|40831|30|NZ_CP054015|PILER-CR,CRISPRCasFinder matches to NZ_KX579977 (Enterococcus faecalis strain EF123 plasmid pEF123, complete sequence) position: , mismatch: 1, identity: 0.967

tttttggtctggagttatcttcccttgtga	CRISPR spacer
tttttggtctggagttatctttccttgtga	Protospacer
*********************.********

6. spacer 1.4|40765|30|NZ_CP054015|PILER-CR,CRISPRCasFinder matches to NC_015219 (Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069 plasmid pSGG1, complete sequence) position: , mismatch: 2, identity: 0.933

tttttggtctggagttatcttcccttgtga	CRISPR spacer
tttttggtctggagttatctttccttgcga	Protospacer
*********************.*****.**

7. spacer 1.5|40831|30|NZ_CP054015|PILER-CR,CRISPRCasFinder matches to NC_015219 (Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069 plasmid pSGG1, complete sequence) position: , mismatch: 2, identity: 0.933

tttttggtctggagttatcttcccttgtga	CRISPR spacer
tttttggtctggagttatctttccttgcga	Protospacer
*********************.*****.**

8. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to MN694619 (Marine virus AFVG_250M660, complete genome) position: , mismatch: 3, identity: 0.9

atactgaattatcttttgatttgtcattat--	CRISPR spacer
atactgaattatcttttggtt--tcattattc	Protospacer
******************.**  *******

9. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to MN693646 (Marine virus AFVG_250M659, complete genome) position: , mismatch: 3, identity: 0.9

atactgaattatcttttgatttgtcattat--	CRISPR spacer
atactgaattatcttttggtt--tcattattc	Protospacer
******************.**  *******

10. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to MN694157 (Marine virus AFVG_250M658, complete genome) position: , mismatch: 3, identity: 0.9

atactgaattatcttttgatttgtcattat--	CRISPR spacer
atactgaattatcttttggtt--tcattattc	Protospacer
******************.**  *******

11. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to MK448816 (Streptococcus phage Javan589, complete genome) position: , mismatch: 4, identity: 0.867

atactgaattatcttttgatttgtcattat	CRISPR spacer
gaactgaattatcttttgacttgtcattgt	Protospacer
. *****************.********.*

12. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to MK448984 (Streptococcus phage Javan562, complete genome) position: , mismatch: 4, identity: 0.867

atactgaattatcttttgatttgtcattat	CRISPR spacer
gaactgaattatcttttgacttgtcattgt	Protospacer
. *****************.********.*

13. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to MK448985 (Streptococcus phage Javan566, complete genome) position: , mismatch: 4, identity: 0.867

atactgaattatcttttgatttgtcattat	CRISPR spacer
gaactgaattatcttttgacttgtcattgt	Protospacer
. *****************.********.*

14. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to MK448987 (Streptococcus phage Javan576, complete genome) position: , mismatch: 5, identity: 0.833

atactgaattatcttttgatttgtcattat	CRISPR spacer
gaactgaattatctttggacttgtcattgt	Protospacer
. ************** **.********.*

15. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NC_010945 (Streptococcus phage PH15, complete genome) position: , mismatch: 5, identity: 0.833

atactgaattatcttttgatttgtcattat	CRISPR spacer
acacactattatcttttgacttgtcattat	Protospacer
*.**   ************.**********

16. spacer 2.13|42368|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032488 (Yersinia hibernica strain CFS1934 plasmid pCFS1934, complete sequence) position: , mismatch: 5, identity: 0.833

agaagtgaatgattatattcgaaattcgta	CRISPR spacer
agaagtgaaagtttatattcgaaatccatt	Protospacer
********* * *************.*.*

17. spacer 2.19|42765|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR214939 (Mycoplasma salivarium strain NCTC10113 plasmid 2) position: , mismatch: 5, identity: 0.833

ttaaaatgcaacgttttggaaat-tggcacg	CRISPR spacer
ttaaaatgcaaccttttgaaaatattgccc-	Protospacer
************ *****.**** * ** *

18. spacer 2.4|41774|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029750 (Staphylococcus aureus strain Smith plasmid pSS41, complete sequence) position: , mismatch: 6, identity: 0.8

tgttattcatttttaaagagaagtgatagt	CRISPR spacer
cgatattcatttttaaatcgaagtgatcat	Protospacer
.* **************  ******** .*

19. spacer 2.5|41840|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NC_007483 (Nitrosococcus oceani ATCC 19707 plasmid A, complete sequence) position: , mismatch: 6, identity: 0.8

gatagcaattcgtcaaatttatttttagga	CRISPR spacer
taccgcatttcgttaaatttatttttaggt	Protospacer
 *. *** *****.***************

20. spacer 2.5|41840|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to MN694652 (Marine virus AFVG_250M647, complete genome) position: , mismatch: 6, identity: 0.8

gatagcaattcgtcaaatttatttttagga	CRISPR spacer
gatagaaattcatcaaatttatttctttca	Protospacer
***** *****.************.*   *

21. spacer 2.5|41840|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to MN693010 (Marine virus AFVG_117M73, complete genome) position: , mismatch: 6, identity: 0.8

gatagcaattcgtcaaatttatttttagga	CRISPR spacer
gatagaaattcatcaaatttatttctttca	Protospacer
***** *****.************.*   *

22. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to MN855726 (Bacteriophage sp. isolate 241, complete genome) position: , mismatch: 6, identity: 0.8

atactgaattatcttttgatttgtcattat	CRISPR spacer
caactgaattatcttttgatgtatcatcaa	Protospacer
  ****************** *.****.*

23. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NC_047926 (Lactobacillus phage Semele, complete genome) position: , mismatch: 6, identity: 0.8

atactgaattatcttttgatttgtcattat	CRISPR spacer
gaagtagattgtcttttgatttgtcattat	Protospacer
. * *..***.*******************

24. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR215040 (Mycoplasma columborale strain NCTC10179 plasmid 2) position: , mismatch: 6, identity: 0.8

atactgaattatcttttgatttgtcattat	CRISPR spacer
attctgaattatcttttgattttagaaaat	Protospacer
** *******************   *  **

25. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to MG557979 (Lactobacillus phage Lpa804, complete genome) position: , mismatch: 6, identity: 0.8

atactgaattatcttttgatttgtcattat	CRISPR spacer
gttataaactgtcttttgatttgtcattat	Protospacer
.*  *.**.*.*******************

26. spacer 2.22|42963|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to MN694181 (Marine virus AFVG_250M537, complete genome) position: , mismatch: 6, identity: 0.8

acttgtccagtaccacctccaccactggat	CRISPR spacer
gcttgtccagtaccaccaccgccaccgcct	Protospacer
.**************** **.****.*  *

27. spacer 2.2|41642|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to JQ340088 (Halocynthia phage JM-2012, complete genome) position: , mismatch: 7, identity: 0.767

cgttatagatgtcttgggttatttgtaaaa	CRISPR spacer
tgttatggatttcttgggttatttccatca	Protospacer
.*****.*** ************* .*  *

28. spacer 2.4|41774|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011152 (Bacillus cereus strain CMCC P0021 plasmid pRML04, complete sequence) position: , mismatch: 7, identity: 0.767

tgttattcatttttaaagagaagtg-atagt	CRISPR spacer
gcttattcattattaaagaaaagtgtgtaa-	Protospacer
  ********* *******.***** .**.

29. spacer 2.4|41774|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP044979 (Bacillus thuringiensis strain BT62 plasmid pBT62A, complete sequence) position: , mismatch: 7, identity: 0.767

tgttattcatttttaaagagaagtg-atagt	CRISPR spacer
gcttattcattattaaagaaaagtgtgtaa-	Protospacer
  ********* *******.***** .**.

30. spacer 2.4|41774|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011154 (Bacillus cereus strain CMCC P0011 plasmid pRML05, complete sequence) position: , mismatch: 7, identity: 0.767

tgttattcatttttaaagagaagtg-atagt	CRISPR spacer
gcttattcattattaaagaaaagtgtgtaa-	Protospacer
  ********* *******.***** .**.

31. spacer 2.5|41840|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021878 (Enterococcus wangshanyuanii strain MN05 plasmid unnamed5) position: , mismatch: 7, identity: 0.767

gatagcaattcgtcaaatttatttttagga	CRISPR spacer
gcaagacgttcttcaaatttatttttaggt	Protospacer
*  **  .*** *****************

32. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015326 (Bacillus filamentosus strain Hbe603 plasmid pBEH4, complete sequence) position: , mismatch: 7, identity: 0.767

atactgaattatcttttgatttgtcattat	CRISPR spacer
cttttgtattatcttttgattagtcattta	Protospacer
 * .** ************** ******

33. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KU525621 (Bacillus anthracis strain P.NO2 plasmid pXO2, complete sequence) position: , mismatch: 7, identity: 0.767

atactgaattatcttttgatttgtcattat	CRISPR spacer
atactgaattttcttttgttttgagccaat	Protospacer
********** ******* ****   . **

34. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NC_014332 (Bacillus cereus biovar anthracis str. CI plasmid pCI-XO2, complete sequence) position: , mismatch: 7, identity: 0.767

atactgaattatcttttgatttgtcattat	CRISPR spacer
atactgaattttcttttgttttgagccaat	Protospacer
********** ******* ****   . **

35. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NC_012577 (Bacillus anthracis str. CDC 684 plasmid pX02, complete sequence) position: , mismatch: 7, identity: 0.767

atactgaattatcttttgatttgtcattat	CRISPR spacer
atactgaattttcttttgttttgagccaat	Protospacer
********** ******* ****   . **

36. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015778 (Bacillus anthracis strain Tangail-1 plasmid pXO2, complete sequence) position: , mismatch: 7, identity: 0.767

atactgaattatcttttgatttgtcattat	CRISPR spacer
atactgaattttcttttgttttgagccaat	Protospacer
********** ******* ****   . **

37. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP018905 (Bacillus anthracis strain Tyrol 4675 plasmid pXO2, complete sequence) position: , mismatch: 7, identity: 0.767

atactgaattatcttttgatttgtcattat	CRISPR spacer
atactgaattttcttttgttttgagccaat	Protospacer
********** ******* ****   . **

38. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023003 (Bacillus anthracis strain 14RA5914 plasmid pX02, complete sequence) position: , mismatch: 7, identity: 0.767

atactgaattatcttttgatttgtcattat	CRISPR spacer
atactgaattttcttttgttttgagccaat	Protospacer
********** ******* ****   . **

39. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP019733 (Bacillus anthracis strain PCr plasmid PCr-pXO2) position: , mismatch: 7, identity: 0.767

atactgaattatcttttgatttgtcattat	CRISPR spacer
atactgaattttcttttgttttgagccaat	Protospacer
********** ******* ****   . **

40. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP018445 (Bacillus anthracis strain CZC5 plasmid pXO2, complete sequence) position: , mismatch: 7, identity: 0.767

atactgaattatcttttgatttgtcattat	CRISPR spacer
atactgaattttcttttgttttgagccaat	Protospacer
********** ******* ****   . **

41. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029325 (Bacillus anthracis strain 17OD930 plasmid pXO2, complete sequence) position: , mismatch: 7, identity: 0.767

atactgaattatcttttgatttgtcattat	CRISPR spacer
atactgaattttcttttgttttgagccaat	Protospacer
********** ******* ****   . **

42. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NC_012655 (Bacillus anthracis str. A0248 plasmid pXO2, complete sequence) position: , mismatch: 7, identity: 0.767

atactgaattatcttttgatttgtcattat	CRISPR spacer
atactgaattttcttttgttttgagccaat	Protospacer
********** ******* ****   . **

43. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NC_007323 (Bacillus anthracis str. 'Ames Ancestor' plasmid pXO2, complete sequence) position: , mismatch: 7, identity: 0.767

atactgaattatcttttgatttgtcattat	CRISPR spacer
atactgaattttcttttgttttgagccaat	Protospacer
********** ******* ****   . **

44. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010854 (Bacillus anthracis strain A1144 plasmid pXO2, complete sequence) position: , mismatch: 7, identity: 0.767

atactgaattatcttttgatttgtcattat	CRISPR spacer
atactgaattttcttttgttttgagccaat	Protospacer
********** ******* ****   . **

45. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007617 (Bacillus anthracis strain 2000031021 plasmid pXO2, complete sequence) position: , mismatch: 7, identity: 0.767

atactgaattatcttttgatttgtcattat	CRISPR spacer
atactgaattttcttttgttttgagccaat	Protospacer
********** ******* ****   . **

46. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP008848 (Bacillus anthracis strain HYU01 plasmid pX02, complete sequence) position: , mismatch: 7, identity: 0.767

atactgaattatcttttgatttgtcattat	CRISPR spacer
atactgaattttcttttgttttgagccaat	Protospacer
********** ******* ****   . **

47. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006744 (Bacillus anthracis str. SVA11 plasmid pXO2, complete sequence) position: , mismatch: 7, identity: 0.767

atactgaattatcttttgatttgtcattat	CRISPR spacer
atactgaattttcttttgttttgagccaat	Protospacer
********** ******* ****   . **

48. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014835 (Bacillus anthracis strain Shikan-NIID plasmid pXO2) position: , mismatch: 7, identity: 0.767

atactgaattatcttttgatttgtcattat	CRISPR spacer
atactgaattttcttttgttttgagccaat	Protospacer
********** ******* ****   . **

49. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029807 (Bacillus anthracis strain London_499 plasmid pX02, complete sequence) position: , mismatch: 7, identity: 0.767

atactgaattatcttttgatttgtcattat	CRISPR spacer
atactgaattttcttttgttttgagccaat	Protospacer
********** ******* ****   . **

50. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024492 (Klebsiella pneumoniae strain INF249 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.767

atactgaattatcttttgatttgtcattat	CRISPR spacer
agatacaattatcttttgaattttcattaa	Protospacer
* *.  ************* ** ******

51. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NC_002146 (Bacillus anthracis plasmid pXO2, complete sequence) position: , mismatch: 7, identity: 0.767

atactgaattatcttttgatttgtcattat	CRISPR spacer
atactgaattttcttttgttttgagccaat	Protospacer
********** ******* ****   . **

52. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NC_017727 (Bacillus anthracis str. H9401 plasmid BAP2, complete sequence) position: , mismatch: 7, identity: 0.767

atactgaattatcttttgatttgtcattat	CRISPR spacer
atactgaattttcttttgttttgagccaat	Protospacer
********** ******* ****   . **

53. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009314 (Bacillus anthracis str. Turkey32 strain 35 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.767

atactgaattatcttttgatttgtcattat	CRISPR spacer
atactgaattttcttttgttttgagccaat	Protospacer
********** ******* ****   . **

54. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014178 (Bacillus anthracis strain Stendal plasmid pXO2, complete sequence) position: , mismatch: 7, identity: 0.767

atactgaattatcttttgatttgtcattat	CRISPR spacer
atactgaattttcttttgttttgagccaat	Protospacer
********** ******* ****   . **

55. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009475 (Bacillus anthracis strain Pasteur plasmid pXO2, complete sequence) position: , mismatch: 7, identity: 0.767

atactgaattatcttttgatttgtcattat	CRISPR spacer
atactgaattttcttttgttttgagccaat	Protospacer
********** ******* ****   . **

56. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009900 (Bacillus anthracis strain 2002013094 plasmid pXO2, complete sequence) position: , mismatch: 7, identity: 0.767

atactgaattatcttttgatttgtcattat	CRISPR spacer
atactgaattttcttttgttttgagccaat	Protospacer
********** ******* ****   . **

57. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009339 (Bacillus anthracis strain Ohio ACB plasmid 2, complete sequence) position: , mismatch: 7, identity: 0.767

atactgaattatcttttgatttgtcattat	CRISPR spacer
atactgaattttcttttgttttgagccaat	Protospacer
********** ******* ****   . **

58. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009462 (Bacillus anthracis strain SK-102 plasmid pXO2, complete sequence) position: , mismatch: 7, identity: 0.767

atactgaattatcttttgatttgtcattat	CRISPR spacer
atactgaattttcttttgttttgagccaat	Protospacer
********** ******* ****   . **

59. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009698 (Bacillus anthracis strain BA1035 plasmid pXO2, complete sequence) position: , mismatch: 7, identity: 0.767

atactgaattatcttttgatttgtcattat	CRISPR spacer
atactgaattttcttttgttttgagccaat	Protospacer
********** ******* ****   . **

60. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009329 (Bacillus anthracis strain K3 plasmid 2, complete sequence) position: , mismatch: 7, identity: 0.767

atactgaattatcttttgatttgtcattat	CRISPR spacer
atactgaattttcttttgttttgagccaat	Protospacer
********** ******* ****   . **

61. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP001972 (Bacillus anthracis str. A16 plasmid pXO2, complete sequence) position: , mismatch: 7, identity: 0.767

atactgaattatcttttgatttgtcattat	CRISPR spacer
atactgaattttcttttgttttgagccaat	Protospacer
********** ******* ****   . **

62. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047133 (Bacillus anthracis str. BF1 plasmid pXO2, complete sequence) position: , mismatch: 7, identity: 0.767

atactgaattatcttttgatttgtcattat	CRISPR spacer
atactgaattttcttttgttttgagccaat	Protospacer
********** ******* ****   . **

63. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to JN638751 (Bacillus phage G, complete genome) position: , mismatch: 7, identity: 0.767

atactgaattatcttttgatttgtcattat	CRISPR spacer
aaactgaattatcttttgctttttctaatt	Protospacer
* **************** *** **    *

64. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031819 (Klebsiella pneumoniae strain INF235-sc-2280127 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

atactgaattatcttttgatttgtcattat	CRISPR spacer
agatacaattatcttttgaattttcattaa	Protospacer
* *.  ************* ** ******

65. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009695 (Bacillus anthracis strain RA3 plasmid pXO2, complete sequence) position: , mismatch: 7, identity: 0.767

atactgaattatcttttgatttgtcattat	CRISPR spacer
atactgaattttcttttgttttgagccaat	Protospacer
********** ******* ****   . **

66. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009542 (Bacillus anthracis strain BA1015 plasmid pXO2, complete sequence) position: , mismatch: 7, identity: 0.767

atactgaattatcttttgatttgtcattat	CRISPR spacer
atactgaattttcttttgttttgagccaat	Protospacer
********** ******* ****   . **

67. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010320 (Bacillus anthracis strain Canadian Bison isolate A0369 plasmid 2, complete sequence) position: , mismatch: 7, identity: 0.767

atactgaattatcttttgatttgtcattat	CRISPR spacer
atactgaattttcttttgttttgagccaat	Protospacer
********** ******* ****   . **

68. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009326 (Bacillus anthracis strain Vollum 1B plasmid 2, complete sequence) position: , mismatch: 7, identity: 0.767

atactgaattatcttttgatttgtcattat	CRISPR spacer
atactgaattttcttttgttttgagccaat	Protospacer
********** ******* ****   . **

69. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009979 (Bacillus anthracis strain Ames isolate BACI008 plasmid unnamed2, complete sequence) position: , mismatch: 7, identity: 0.767

atactgaattatcttttgatttgtcattat	CRISPR spacer
atactgaattttcttttgttttgagccaat	Protospacer
********** ******* ****   . **

70. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to MN694048 (Marine virus AFVG_250M379, complete genome) position: , mismatch: 7, identity: 0.767

atactgaattatcttttgatttgtcattat	CRISPR spacer
ctactgaaatatcttttgattttccaatga	Protospacer
 ******* ************* .** *.

71. spacer 2.15|42501|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013227 (Staphylococcus aureus strain UTSW MRSA 55 plasmid UTSW55_1, complete sequence) position: , mismatch: 7, identity: 0.767

tgtgtatacgtcattataacatcaataatc	CRISPR spacer
ggtaaatacgtctttaaaacatcaataaaa	Protospacer
 **. ******* *** ***********

72. spacer 2.22|42963|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KP276584 (Escherichia coli strain 39R861 plasmid p39R861-4, complete sequence) position: , mismatch: 7, identity: 0.767

acttgtccagtaccacctccaccactggat	CRISPR spacer
aacgttcaagtaccacctccaccaccggac	Protospacer
* .  ** *****************.***.

73. spacer 2.22|42963|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NC_012885 (Aeromonas hydrophila plasmid pRA1, complete sequence) position: , mismatch: 7, identity: 0.767

acttgtccagtaccacctccaccactggat	CRISPR spacer
aacgttcaagtaccacctccaccaccggac	Protospacer
* .  ** *****************.***.

74. spacer 2.22|42963|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042536 (Citrobacter freundii strain E51 plasmid pE51_002, complete sequence) position: , mismatch: 7, identity: 0.767

acttgtccagtaccacctccaccactggat	CRISPR spacer
aacgttcaagtaccacctccaccaccggac	Protospacer
* .  ** *****************.***.

75. spacer 2.22|42963|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034714 (Salmonella enterica subsp. enterica serovar Mikawasima strain RSE15 plasmid pRSE15, complete sequence) position: , mismatch: 7, identity: 0.767

acttgtccagtaccacctccaccactggat	CRISPR spacer
aacgttcaagtaccacctccaccaccggac	Protospacer
* .  ** *****************.***.

76. spacer 2.22|42963|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012168 (Enterobacter hormaechei subsp. steigerwaltii strain 34998 plasmid p34998-239.973kb, complete sequence) position: , mismatch: 7, identity: 0.767

acttgtccagtaccacctccaccactggat	CRISPR spacer
aacgttcaagtaccacctccaccaccggac	Protospacer
* .  ** *****************.***.

77. spacer 2.22|42963|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG550958 (Escherichia coli strain G3216 plasmid pG3216.2, complete sequence) position: , mismatch: 7, identity: 0.767

acttgtccagtaccacctccaccactggat	CRISPR spacer
aacgttcaagtaccacctccaccaccggac	Protospacer
* .  ** *****************.***.

78. spacer 2.22|42963|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MG053108 (Citrobacter freundii strain 33587 plasmid pCf587, complete sequence) position: , mismatch: 7, identity: 0.767

acttgtccagtaccacctccaccactggat	CRISPR spacer
aacgttcaagtaccacctccaccaccggac	Protospacer
* .  ** *****************.***.

79. spacer 2.22|42963|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022425 (Vitreoscilla filiformis strain ATCC 15551 plasmid pVF2, complete sequence) position: , mismatch: 7, identity: 0.767

acttgtccagtaccacctccaccactggat	CRISPR spacer
gcgcctccagtaccacttccaccattgggt	Protospacer
.* . ***********.*******.***.*

80. spacer 2.22|42963|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NC_031927 (Synechococcus phage S-CAM7 isolate 0910CC49, complete genome) position: , mismatch: 7, identity: 0.767

acttgtccagtaccacctccaccactggat	CRISPR spacer
gctacaccagtaccaccaccaccacttgaa	Protospacer
.**   *********** ******** **

81. spacer 2.2|41642|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025695 (Lactobacillus plantarum strain IRG1 plasmid pIRG105, complete sequence) position: , mismatch: 8, identity: 0.733

cgttatagatgtcttgggttatttgtaaaa	CRISPR spacer
taatatagatgtcgggggttatttgtttta	Protospacer
.. **********  ***********   *

82. spacer 2.2|41642|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP037438 (Lactobacillus plantarum strain EM plasmid pEM9, complete sequence) position: , mismatch: 8, identity: 0.733

cgttatagatgtcttgggttatttgtaaaa	CRISPR spacer
taatatagatgtcgggggttatttgtttta	Protospacer
.. **********  ***********   *

83. spacer 2.2|41642|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053914 (Lactobacillus plantarum subsp. plantarum strain G1 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.733

cgttatagatgtcttgggttatttgtaaaa	CRISPR spacer
taatatagatgtcgggggttatttgtttta	Protospacer
.. **********  ***********   *

84. spacer 2.5|41840|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NC_009796 (Campylobacter concisus 13826 plasmid pCCON16, complete sequence) position: , mismatch: 8, identity: 0.733

gatagcaattcgtcaaatttatttttagga	CRISPR spacer
cctacaaattcttcaaatttatttttatat	Protospacer
  **  ***** *************** .

85. spacer 2.7|41972|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040853 (Lactobacillus murinus strain V10 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

ttttgattatttcaaacgttttggagatga	CRISPR spacer
tgacgattatgttaaacgttttggagaaac	Protospacer
*  .****** *.************** .

86. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to MH319742 (Marine virus AG-345-E15 Ga0172270_12 genomic sequence) position: , mismatch: 8, identity: 0.733

atactgaattatcttttgatttgtcattat	CRISPR spacer
tctttgaattattgtttgatttgtcattcc	Protospacer
 . .********. ************** .

87. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022346 (Bacillus thuringiensis strain c25 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

atactgaattatcttttgatttgtcattat	CRISPR spacer
ctctataattatcttttgatttttcactac	Protospacer
 * .  **************** ***.**.

88. spacer 2.11|42236|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048351 (Raoultella ornithinolytica strain 23 plasmid p23_B, complete sequence) position: , mismatch: 8, identity: 0.733

attcctagcaattgggaaaatatgtcagca	CRISPR spacer
tgacgacgcaagtgggaaaatctgtcagca	Protospacer
   *   **** ********* ********

89. spacer 2.11|42236|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026272 (Klebsiella oxytoca strain KONIH4 plasmid pKPC-f607, complete sequence) position: , mismatch: 8, identity: 0.733

attcctagcaattgggaaaatatgtcagca	CRISPR spacer
tgacgacgcaagtgggaaaatctgtcagca	Protospacer
   *   **** ********* ********

90. spacer 2.11|42236|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007735 (Klebsiella pneumoniae subsp. pneumoniae KPNIH27 plasmid pKPN-a41, complete sequence) position: , mismatch: 8, identity: 0.733

attcctagcaattgggaaaatatgtcagca	CRISPR spacer
tgacgacgcaagtgggaaaatctgtcagca	Protospacer
   *   **** ********* ********

91. spacer 2.11|42236|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022999 (Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-A, complete sequence) position: , mismatch: 8, identity: 0.733

attcctagcaattgggaaaatatgtcagca	CRISPR spacer
tggccaagcaattgggaaaataggtccgag	Protospacer
   ** **************** *** * .

92. spacer 2.14|42434|31|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045275 (Bacillus megaterium strain FDU301 plasmid pFDU301C, complete sequence) position: , mismatch: 8, identity: 0.742

tgaatattatcaagaagagcaactttactag	CRISPR spacer
gcaatattaccaataagagcaacttctgttg	Protospacer
  *******.*** ***********.  * *

93. spacer 2.14|42434|31|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NC_011774 (Bacillus cereus G9842 plasmid pG9842_140, complete sequence) position: , mismatch: 8, identity: 0.742

tgaatat-----tatcaagaagagcaactttactag	CRISPR spacer
-----attcctgtatcaagaatagcaactttaatac	Protospacer
     **     ********* ********** **

94. spacer 2.14|42434|31|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to MT162467 (Synechococcus phage S-H34, complete genome) position: , mismatch: 8, identity: 0.742

tgaatattatcaagaagagcaactttactag-----	CRISPR spacer
tgaatattaccaagaatagca-----acaaggaaca	Protospacer
*********.****** ****     ** **

95. spacer 2.16|42567|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NC_014390 (Butyrivibrio proteoclasticus B316 plasmid pCY186, complete sequence) position: , mismatch: 8, identity: 0.733

actcactaacgactttgaaatcattgactt	CRISPR spacer
gtcagataacgactttgaaagcatcgactt	Protospacer
... . ************** ***.*****

96. spacer 2.18|42699|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016179 (Vibrio breoganii strain FF50 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

agcccttccatcttatcttttactgaattg	CRISPR spacer
atttcttcaatcgtatcttttactgaagct	Protospacer
* ..**** *** ************** .

97. spacer 1.3|40699|30|NZ_CP054015|PILER-CR,CRISPRCasFinder matches to MT774400 (CrAssphage cr4_1, complete genome) position: , mismatch: 9, identity: 0.7

tctagagacaatggtgttctagcagattca	CRISPR spacer
gaaggagataatggagttctagcagataat	Protospacer
   .****.***** ************

98. spacer 2.4|41774|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to KM224879 (Vibrio phage ICP2_2013_A_Haiti, complete genome) position: , mismatch: 9, identity: 0.7

tgttattcatttttaaagagaagtgatagt	CRISPR spacer
tcaaccacatttttaaagagcagtgataaa	Protospacer
*    . ************* *******.

99. spacer 2.14|42434|31|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to LT960552 (Yersinia phage fHe-Yen9-03 genome assembly, complete genome: monopartite) position: , mismatch: 9, identity: 0.71

tgaatattatcaagaagagcaactttactag	CRISPR spacer
ctataggtatcaatacgagcaactttactaa	Protospacer
. *  . ****** * **************.

100. spacer 2.22|42963|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to NC_016585 (Azospirillum lipoferum 4B plasmid AZO_p1, complete sequence) position: , mismatch: 9, identity: 0.7

acttgtccagtaccacctccaccactggat	CRISPR spacer
ggttgtccagcacctcctccaccacgccga	Protospacer
. ********.*** **********   .

101. spacer 2.9|42104|30|NZ_CP054015|PILER-CR,CRISPRCasFinder,CRT matches to AP018319 (Nostoc sp. HK-01 plasmid plasmid1 DNA, complete genome) position: , mismatch: 10, identity: 0.667

atactgaattatcttttgatttgtcattat	CRISPR spacer
cagtgaaattatcttttgatttgttatagc	Protospacer
  .. .******************.** ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

273955 : 289852

Streptococcus_phage(76.92%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009854742.1\|273955_274792_-	aldo/keto reductase	A0A1V0SDE7	Indivirus	5.9e-28	32.3
WP_009854743.1\|274804_275626_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_009854744.1\|275730_276603_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_009854745.1\|276739_277096_-	arsenate reductase family protein	M1PLC0	Streptococcus_phage	8.0e-35	59.1
WP_009854746.1\|277108_277594_-	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	1.1e-42	52.8
WP_009854747.1\|277652_277880_-	hypothetical protein	NA	NA	NA	NA
WP_009854748.1\|277980_279159_-	3-phosphoglycerate dehydrogenase	M1NSB9	Streptococcus_phage	9.3e-181	81.4
WP_003065991.1\|279204_279753_-	GNAT family N-acetyltransferase	M1PSC3	Streptococcus_phage	8.8e-57	57.9
WP_009854749.1\|279823_280915_-	3-phosphoserine/phosphohydroxythreonine transaminase	M1Q1P2	Streptococcus_phage	3.5e-174	81.8
WP_009854750.1\|281050_281689_+	copper homeostasis protein CutC	NA	NA	NA	NA
WP_003066000.1\|281820_282162_-	P-II family nitrogen regulator	NA	NA	NA	NA
WP_009854751.1\|282218_283454_-	ammonium transporter	NA	NA	NA	NA
WP_009854752.1\|283853_284720_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	8.5e-115	72.2
WP_003066006.1\|284726_285047_-	DNA replication initiation control protein YabA	M1PFV3	Streptococcus_phage	1.5e-29	61.3
WP_009854753.1\|285039_285840_-	signal peptidase II	NA	NA	NA	NA
WP_009854754.1\|285836_286712_-	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	8.7e-75	50.7
WP_009854755.1\|286722_287358_-	dTMP kinase	M1PSC7	Streptococcus_phage	2.8e-70	65.7
WP_012962376.1\|287544_288204_-	CBS domain-containing protein	M1NSC5	Streptococcus_phage	2.5e-74	65.1
WP_009854757.1\|288377_289088_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.0e-17	27.4
WP_003066020.1\|289087_289852_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	5.5e-17	25.2

DBSCAN-SWA_2

352284 : 372385

Streptococcus_phage(90.0%)

integrase

attL 344444:344459|attR 369344:369359

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
344444:344459	attL	NA	NA	NA	NA
WP_009854819.1\|352284_353769_-	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	2.7e-23	28.4
WP_009854820.1\|353768_354461_-	response regulator transcription factor	W8CYM9	Bacillus_phage	2.8e-28	32.0
WP_001291561.1\|354862_356080_-\|integrase	tyrosine-type recombinase/integrase	A0A1S5SEW7	Streptococcus_phage	3.7e-233	100.0
WP_000814511.1\|356161_356365_-	excisionase	A0A1S5SF07	Streptococcus_phage	4.0e-31	100.0
WP_000857133.1\|356825_357056_-	helix-turn-helix domain-containing protein	A0A1S5SEX1	Streptococcus_phage	2.7e-36	100.0
WP_009854821.1\|357052_357475_-	sigma-70 family RNA polymerase sigma factor	A0A1S5SEW0	Streptococcus_phage	9.7e-72	99.3
WP_001227347.1\|357979_358333_+	helix-turn-helix domain-containing protein	A0A1S5SFA6	Streptococcus_phage	1.3e-58	100.0
WP_000336323.1\|358392_358560_-	cysteine-rich KTR domain-containing protein	D0R0F6	Streptococcus_phage	1.6e-14	68.0
WP_000691727.1\|358678_360598_-	tetracycline resistance ribosomal protection protein Tet(M)	A0A1S5SF82	Streptococcus_phage	0.0e+00	100.0
WP_001791010.1\|360613_360730_-	tetracycline resistance determinant leader peptide	NA	NA	NA	NA
WP_001224319.1\|360974_361907_-	conjugal transfer protein	A0A1S5SF22	Streptococcus_phage	1.1e-171	100.0
WP_009854822.1\|361903_362905_-	lysozyme family protein	A0A1S5SEZ8	Streptococcus_phage	1.4e-190	99.7
WP_000804748.1\|362901_365079_-	membrane protein	A0A1S5SF30	Streptococcus_phage	0.0e+00	100.0
WP_000331160.1\|365081_367529_-	ATP-binding protein	A0A1S5SF64	Streptococcus_phage	0.0e+00	100.0
WP_000506270.1\|367512_368019_-	conjugal transfer protein	A0A1S5SEX7	Streptococcus_phage	8.6e-91	100.0
WP_000342539.1\|367993_368491_-	antirestriction protein ArdA	A0A1S5SF25	Streptococcus_phage	1.7e-91	100.0
WP_001009056.1\|368607_368829_-	hypothetical protein	A0A1S5SEY0	Streptococcus_phage	4.3e-31	100.0
WP_000398284.1\|368871_370077_-	replication initiation factor domain-containing protein	A0A1S5SEX3	Streptococcus_phage	2.8e-233	100.0
369344:369359	attR	NA	NA	NA	NA
WP_000879507.1\|370099_370252_-	hypothetical protein	NA	NA	NA	NA
WP_000813488.1\|370254_371640_-	DNA translocase FtsK	A0A1S5SFB5	Streptococcus_phage	1.1e-265	100.0
WP_000985015.1\|371668_372055_-	YdcP family protein	A0A1S5SF96	Streptococcus_phage	3.0e-64	100.0
WP_000420682.1\|372070_372385_-	YdcP family protein	A0A1S5SF38	Streptococcus_phage	5.2e-54	100.0

DBSCAN-SWA_3

517178 : 563085

Staphylococcus_phage(20.0%)

tRNA,protease,bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_043878602.1\|517178_518006_+\|protease	PrsW family intramembrane metalloprotease	NA	NA	NA	NA
WP_013643457.1\|518097_518829_-	MerR family transcriptional regulator	NA	NA	NA	NA
WP_009854962.1\|518931_519519_-	3'-5' exonuclease	NA	NA	NA	NA
WP_009854963.1\|519591_520125_-	DUF536 domain-containing protein	NA	NA	NA	NA
WP_009854964.1\|520345_521518_+	NAD(P)/FAD-dependent oxidoreductase	A0A2H4PQX1	Staphylococcus_phage	2.9e-17	57.8
WP_003066499.1\|521648_521918_+	30S ribosomal protein S14	NA	NA	NA	NA
WP_009854965.1\|521982_522462_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_009854966.1\|522471_523497_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_009854967.1\|523605_524007_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_009854968.1\|523995_524322_-	AzlD domain-containing protein	NA	NA	NA	NA
WP_009854969.1\|524311_525007_-	AzlC family ABC transporter permease	NA	NA	NA	NA
WP_009854970.1\|525151_526162_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	1.7e-61	41.0
WP_009854971.1\|526171_526612_-	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA
WP_043878675.1\|526595_527285_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
WP_009854973.1\|527465_527696_+	DNA-dependent RNA polymerase auxiliary subunit epsilon family protein	NA	NA	NA	NA
WP_009854974.1\|527697_529380_+	ribonuclease J	NA	NA	NA	NA
WP_009854976.1\|529645_530275_-	CHAP domain-containing protein	NA	NA	NA	NA
WP_009854977.1\|530462_531902_-	glutamate synthase subunit beta	NA	NA	NA	NA
WP_012962507.1\|531903_536421_-	glutamate synthase large subunit	NA	NA	NA	NA
WP_009854979.1\|536598_537945_-	type I glutamate--ammonia ligase	NA	NA	NA	NA
WP_009854980.1\|537994_538366_-	MerR family transcriptional regulator	Q9EYF2	Enterobacteria_phage	4.0e-05	35.8
WP_009854981.1\|538454_538991_-	aromatic acid exporter family protein	NA	NA	NA	NA
WP_009854982.1\|539219_540416_-	phosphoglycerate kinase	NA	NA	NA	NA
WP_004233286.1\|540603_541617_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_009854983.1\|541821_543900_-	elongation factor G	E4ZFJ7	Streptococcus_phage	9.7e-64	29.1
WP_003066535.1\|544100_544571_-	30S ribosomal protein S7	NA	NA	NA	NA
WP_009854984.1\|544591_545005_-	30S ribosomal protein S12	NA	NA	NA	NA
WP_012962508.1\|545296_546109_-	pur operon repressor	NA	NA	NA	NA
WP_009854986.1\|546255_547194_-	HD domain-containing protein	NA	NA	NA	NA
WP_009854987.1\|547183_548458_-	DNA recombination protein RmuC	NA	NA	NA	NA
WP_009854988.1\|548459_549089_-	thiamine diphosphokinase	NA	NA	NA	NA
WP_009854989.1\|549081_549744_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_009854990.1\|549750_550623_-	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA
WP_009854991.1\|552817_553018_-	hypothetical protein	NA	NA	NA	NA
WP_009854992.1\|553149_554514_-	GHKL domain-containing protein	NA	NA	NA	NA
WP_012962512.1\|554526_555255_-	response regulator transcription factor	NA	NA	NA	NA
WP_009854994.1\|555353_555647_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_009854995.1\|555697_555925_-	hypothetical protein	NA	NA	NA	NA
WP_003066564.1\|556194_556506_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_009854997.1\|556517_556667_-	hypothetical protein	NA	NA	NA	NA
WP_009854998.1\|556676_556976_-	DUF3884 family protein	NA	NA	NA	NA
WP_009854999.1\|557275_557413_+	hypothetical protein	NA	NA	NA	NA
WP_009855000.1\|557434_558742_-	GHKL domain-containing protein	NA	NA	NA	NA
WP_009855001.1\|558749_559481_-	response regulator transcription factor	A0A1V0E029	Clostridioides_phage	1.5e-19	25.0
WP_009855002.1\|559497_559824_-	LytTR family transcriptional regulator	NA	NA	NA	NA
WP_009855003.1\|560024_560225_-	hypothetical protein	NA	NA	NA	NA
WP_009855005.1\|560546_561560_-\|bacteriocin	bacteriocin biosynthesis protein	NA	NA	NA	NA
WP_009855009.1\|562617_562815_-\|bacteriocin	class IIb bacteriocin, lactobin A/cerein 7B family	NA	NA	NA	NA
WP_009855010.1\|562833_563085_-\|bacteriocin	ComC/BlpC family leader-containing pheromone/bacteriocin	NA	NA	NA	NA

DBSCAN-SWA_4

778902 : 787039

Staphylococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009855203.1\|778902_779556_-	transglycosylase SLT domain-containing protein	Q4Z8Z7	Staphylococcus_phage	6.4e-22	76.8
WP_009855204.1\|779762_780353_-	LysM peptidoglycan-binding domain-containing protein	A0A0E3XCL7	Enterococcus_phage	1.1e-20	76.9
WP_009855205.1\|780485_781283_-	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA
WP_009855206.1\|781275_782118_-	energy-coupling factor transporter ATPase	A0A2H4PQG7	Staphylococcus_phage	8.8e-16	28.5
WP_009855207.1\|782093_782936_-	energy-coupling factor transporter ATPase	W8CYL7	Bacillus_phage	1.3e-14	30.3
WP_009855208.1\|782932_783487_-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
WP_009855209.1\|783496_784441_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_009855210.1\|784504_785794_-	insulinase family protein	A0A1E1EST3	Acanthamoeba_castellanii_mimivirus	1.2e-19	31.2
WP_009855211.1\|785794_787039_-	insulinase family protein	A0A1X9I714	Streptococcus_phage	7.2e-91	42.7

DBSCAN-SWA_5

1188667 : 1248804

Streptococcus_phage(69.57%)

portal,tail,integrase,capsid,head,bacteriocin,terminase

attL 1195308:1195324|attR 1224042:1224058

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009853472.1\|1188667_1188970_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_003063479.1\|1188985_1189720_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	5.5e-30	30.7
WP_009853473.1\|1189724_1191350_+	hypothetical protein	NA	NA	NA	NA
WP_043878510.1\|1191407_1193261_-	PTS glucose transporter subunit IIA	NA	NA	NA	NA
WP_009853475.1\|1193397_1194357_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_009853476.1\|1194404_1195841_+	6-phospho-beta-glucosidase	NA	NA	NA	NA
1195308:1195324	attL	NA	NA	NA	NA
WP_009853477.1\|1195949_1196753_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	4.3e-44	39.3
WP_043878512.1\|1196767_1198018_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	6.3e-111	55.0
WP_009853479.1\|1198144_1199119_+	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA
WP_009853480.1\|1199121_1199445_+	cell division protein FtsL	NA	NA	NA	NA
WP_009853481.1\|1199454_1201719_+	penicillin-binding protein	NA	NA	NA	NA
WP_009853482.1\|1201725_1202739_+	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA
WP_009853483.1\|1202937_1204281_+	DEAD/DEAH box helicase	A0A0N9Q9J4	Chrysochromulina_ericina_virus	2.7e-43	27.5
WP_009853484.1\|1204466_1205291_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
WP_009853485.1\|1205365_1206169_+	amino acid ABC transporter permease	NA	NA	NA	NA
WP_009853486.1\|1206168_1206912_+	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.4e-27	38.3
WP_009853487.1\|1207002_1207227_+	DUF4059 family protein	NA	NA	NA	NA
WP_009853488.1\|1207290_1208205_+	thioredoxin-disulfide reductase	G3MA85	Bacillus_virus	1.2e-87	52.1
WP_009853489.1\|1208502_1209663_-\|integrase	site-specific integrase	A0A141E0Q7	Streptococcus_phage	3.3e-77	41.4
WP_043878513.1\|1210002_1211589_-	SIR2 family protein	A0A1S5SA14	Streptococcus_phage	3.7e-140	67.8
WP_043878514.1\|1211848_1212310_-	TM2 domain-containing protein	A0A060AN66	Enterococcus_phage	1.7e-08	39.8
WP_009853492.1\|1212363_1213104_-	hypothetical protein	A0A1S5S8M7	Streptococcus_phage	6.5e-31	47.4
WP_043878626.1\|1213106_1213814_-	helix-turn-helix transcriptional regulator	J7KJ52	Streptococcus_phage	2.3e-57	50.6
WP_009853494.1\|1214209_1214368_+	hypothetical protein	NA	NA	NA	NA
WP_043878515.1\|1214510_1215002_-	hypothetical protein	NA	NA	NA	NA
WP_009853496.1\|1215059_1215272_+	helix-turn-helix transcriptional regulator	A0A141E0W0	Streptococcus_phage	8.7e-21	75.4
WP_009853497.1\|1215300_1216188_+	DUF3102 domain-containing protein	C9WB89	Streptococcus_virus	1.6e-52	66.1
WP_009853498.1\|1216190_1217030_+	ParB N-terminal domain-containing protein	A0A141E1C9	Streptococcus_phage	1.1e-18	26.9
WP_009853499.1\|1217435_1217705_+	hypothetical protein	A0A1S5SC19	Streptococcus_phage	3.3e-25	69.8
WP_009853500.1\|1217639_1218446_-	TIGR02391 family protein	A0A1S5SBU1	Streptococcus_phage	3.0e-122	81.7
WP_009853501.1\|1218495_1218696_+	ATP synthase F0 subunit B	NA	NA	NA	NA
WP_009853502.1\|1218679_1219039_-	hypothetical protein	NA	NA	NA	NA
WP_043878516.1\|1219139_1219391_+	hypothetical protein	A0A1S5SFD5	Streptococcus_phage	1.5e-24	64.7
WP_009853505.1\|1219675_1220578_+	phage replisome organizer N-terminal domain-containing protein	M1PS00	Streptococcus_phage	4.2e-80	60.1
WP_009853506.1\|1220580_1220835_+	hypothetical protein	NA	NA	NA	NA
WP_009853507.1\|1220834_1221056_+	hypothetical protein	C5J991	Streptococcus_phage	8.2e-14	58.5
WP_009853508.1\|1221055_1221310_+	hypothetical protein	NA	NA	NA	NA
WP_009853509.1\|1221321_1222053_+	phage recombination protein Bet	A0A060QS54	Streptococcus_phage	3.6e-106	89.4
WP_009853510.1\|1222066_1223065_+	DUF1351 domain-containing protein	A0A060QNS1	Streptococcus_phage	2.1e-117	67.9
WP_009853511.1\|1223073_1223517_+	single-stranded DNA-binding protein	A0A286QMX2	Streptococcus_phage	9.3e-41	59.2
WP_009853512.1\|1223528_1223975_+	RusA family crossover junction endodeoxyribonuclease	A0A097PAS0	Streptococcus_pyogenes_phage	4.3e-46	61.6
WP_009853514.1\|1224111_1224372_+	PIN domain protein	NA	NA	NA	NA
1224042:1224058	attR	NA	NA	NA	NA
WP_155734604.1\|1224425_1224596_+	hypothetical protein	NA	NA	NA	NA
WP_172855741.1\|1224588_1224753_+	hypothetical protein	NA	NA	NA	NA
WP_009853517.1\|1224745_1225276_+	DUF1642 domain-containing protein	A0A1X9I5P8	Streptococcus_phage	7.5e-21	37.6
WP_009853519.1\|1225436_1225823_+	hypothetical protein	A0A1S5SFT9	Streptococcus_phage	2.9e-14	40.4
WP_009853520.1\|1225819_1226068_+	hypothetical protein	NA	NA	NA	NA
WP_009853522.1\|1226788_1227199_+	DUF1492 domain-containing protein	A0A126GGN9	Streptococcus_phage	8.3e-44	66.4
WP_009853523.1\|1227376_1227985_+	hypothetical protein	NA	NA	NA	NA
WP_080542516.1\|1228034_1228529_+\|terminase	terminase small subunit	U6E976	Streptococcus_phage	7.7e-44	61.6
WP_009853525.1\|1228518_1229769_+\|terminase	PBSX family phage terminase large subunit	C9W9H4	Streptococcus_virus	7.3e-192	78.7
WP_009853526.1\|1229780_1231313_+\|portal	phage portal protein	C9W9H5	Streptococcus_virus	2.8e-129	52.4
WP_009853527.1\|1231281_1232250_+\|capsid	minor capsid protein	A0A2P1JTW9	Anoxybacillus_phage	2.5e-54	40.6
WP_009853528.1\|1232266_1232413_+	hypothetical protein	NA	NA	NA	NA
WP_009853529.1\|1232704_1233349_+	DUF4355 domain-containing protein	A0A286QQH5	Streptococcus_phage	1.2e-28	56.3
WP_009853530.1\|1233361_1233739_+	hypothetical protein	A0A286QPB3	Streptococcus_phage	3.8e-19	43.8
WP_009853531.1\|1233743_1234793_+\|capsid	major capsid protein	A0A286QR01	Streptococcus_phage	4.1e-111	59.0
WP_009853532.1\|1234808_1234958_+	hypothetical protein	NA	NA	NA	NA
WP_009853533.1\|1234966_1235311_+\|head,tail	phage head-tail connector protein	A0A286QRP4	Streptococcus_phage	2.5e-25	53.2
WP_009853534.1\|1235307_1235625_+	hypothetical protein	NA	NA	NA	NA
WP_009853535.1\|1235617_1235971_+	HK97 gp10 family phage protein	A0A286QQW7	Streptococcus_phage	1.2e-22	50.9
WP_009853536.1\|1235960_1236350_+	hypothetical protein	W6LLG8	Streptococcus_phage	1.1e-26	44.4
WP_009853537.1\|1236359_1236842_+\|tail	phage major tail protein, TP901-1 family	O34068	Streptococcus_phage	2.0e-52	69.5
WP_009853538.1\|1236894_1237245_+	phage protein	O34069	Streptococcus_phage	7.6e-22	49.2
WP_172855742.1\|1237280_1237631_+	hypothetical protein	A0A2H4J2Z7	uncultured_Caudovirales_phage	7.1e-12	50.7
WP_009853540.1\|1237623_1240707_+\|tail	phage tail tape measure protein	A0A1J0MFP9	Staphylococcus_phage	5.2e-98	56.9
WP_009853541.1\|1240699_1241578_+\|tail	phage tail family protein	C9W9I9	Streptococcus_virus	2.2e-41	42.2
WP_009853542.1\|1241656_1242256_+	hypothetical protein	Q2I7P6	Streptococcus_phage	3.3e-17	51.7
WP_009853543.1\|1242252_1246629_+	hypothetical protein	Q2I7P5	Streptococcus_phage	1.1e-125	46.0
WP_009853544.1\|1246644_1246980_+	hypothetical protein	A0A1S5S8I0	Streptococcus_phage	5.8e-27	53.5
WP_009853545.1\|1246995_1247271_+	hypothetical protein	A0A0K0MWQ4	Streptococcus_phage	1.4e-18	54.4
WP_009853546.1\|1247267_1247531_+	hypothetical protein	NA	NA	NA	NA
WP_009853547.1\|1247520_1248804_+	LysM peptidoglycan-binding domain-containing protein	A0A0S2MYF3	Enterococcus_phage	1.2e-144	61.8

DBSCAN-SWA_6

2000270 : 2008878

Bacillus_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009854245.1\|2000270_2001191_+	type I pantothenate kinase	A0A1B1ISL9	uncultured_Mediterranean_phage	1.6e-34	33.5
WP_003064878.1\|2001265_2001517_+	30S ribosomal protein S20	NA	NA	NA	NA
WP_009854246.1\|2001652_2002993_-	HAMP domain-containing histidine kinase	Q8QNA2	Ectocarpus_siliculosus_virus	2.2e-08	34.0
WP_009854247.1\|2002982_2003657_-	response regulator transcription factor	W8CYM9	Bacillus_phage	2.9e-25	32.3
WP_009854248.1\|2003854_2006398_-	M1 family metallopeptidase	A0A0P0IY26	Acinetobacter_phage	3.3e-66	24.3
WP_009854249.1\|2006620_2007274_-	phosphate signaling complex protein PhoU	NA	NA	NA	NA
WP_009854250.1\|2007304_2008063_-	phosphate ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	5.0e-18	30.5
WP_009854251.1\|2008074_2008878_-	phosphate ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	4.9e-16	28.5

DBSCAN-SWA_7

2152135 : 2161348

Bacillus_phage(37.5%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009854400.1\|2152135_2152627_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	1.3e-46	62.3
WP_172855747.1\|2152639_2153356_-	7-carboxy-7-deazaguanine synthase QueE	E7DN68	Pneumococcus_phage	8.2e-63	47.5
WP_009854402.1\|2153345_2153792_-	6-carboxytetrahydropterin synthase QueD	J9PV91	Bacillus_phage	5.8e-43	58.4
WP_043878574.1\|2153797_2154445_-	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	1.1e-61	54.7
WP_009854404.1\|2154685_2156455_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.0e-57	30.1
WP_043878575.1\|2156457_2158197_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.0e-38	26.4
WP_009854406.1\|2158274_2160146_-	ABC-F family ATP-binding cassette domain-containing protein	A0A2K9L3Z8	Tupanvirus	2.3e-64	32.1
WP_009854407.1\|2160142_2161348_-\|tRNA	CCA tRNA nucleotidyltransferase	H7BUW3	unidentified_phage	1.2e-42	48.5

Anti-CRISPR protein detection

Acr_ID: NZ_CP054015.1|WP_009853863.1|1568723_1569050_-|replication-initiator-protein-A

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP054015.1|WP_009853863.1|1568723_1569050_-|replication-initiator-protein-A

1568723_1569050_-

108 aa aa

hit_Aca_id	identity	query_coverage	hit_coverage
gnl\|BL_ORD_ID\|63	0.7685185185185185	1	1.0

HTH_XRE

Identity	Hit_domain_coverage
NA	NA

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP054015

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

Click the colored protein region to show detailed information