CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP054017	Staphylococcus warneri strain FDAARGOS_754 chromosome, complete genome	3 crisprs	DEDDh,DinG,cas3,csa3,WYL	0	2	8	0
NZ_CP054016	Staphylococcus warneri strain FDAARGOS_754 plasmid unnamed, complete sequence	0 crisprs	NA	0	0	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP054017_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP054017_1

1378516-1378599

Orphan

Consensus_repeat	Method
TATATCGCCTGAATCATTGTTTACTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP054017_1

>merge|NZ_CP054017|1|1378516-1378599|CRISPRCasFinder
TATATCGCCTGAATCATTGTTTACTTTGCCGTTGGTGAATTCAATGTGAGTTGTTGATATATCTCCTGAATCATTGTTTACTTT

>NZ_CP054017|1|1|1378516-1378599|CRISPRCasFinder
TATATCGCCTGAATCATTGTTTACTTT	GCCGTTGGTGAATTCAATGTGAGTTGTTGA
TATATCTCCTGAATCATTGTTTACTTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054017.1\|WP_037551723.1\|1386142_1387045_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223730
NZ_CP054017.1\|WP_172852397.1\|1382458_1382965_-\|transposase	unknown	unknown	gnl\|CDD\|225511
NZ_CP054017.1\|WP_002451958.1\|1372965_1373865_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226631
NZ_CP054017.1\|WP_002450254.1\|1384110_1385100_-\|magnesium/cobalt-transporter-CorA	unknown	unknown	gnl\|CDD\|213365
NZ_CP054017.1\|WP_037552506.1\|1376503_1376695_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224393
NZ_CP054017.1\|WP_002451954.1\|1376824_1377439_-\|DUF805-domain-containing-protein	unknown	unknown	gnl\|CDD\|225694
NZ_CP054017.1\|WP_002451961.1\|1370033_1371044_-\|galactose-mutarotase	unknown	unknown	gnl\|CDD\|185696
NZ_CP054017.1\|WP_002451963.1\|1368445_1369138_-\|ribose-5-phosphate-isomerase-A	unknown	unknown	gnl\|CDD\|184433
NZ_CP054017.1\|WP_002450253.1\|1385214_1385700_+\|thioesterase-family-protein	unknown	unknown	gnl\|CDD\|372545
NZ_CP054017.1\|WP_002450252.1\|1385696_1386095_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054017.1\|WP_052831771.1\|1375760_1376132_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054017.1\|WP_002451951.1\|1379078_1379639_-\|DUF1700-domain-containing-protein	unknown	unknown	gnl\|CDD\|285278
NZ_CP054017.1\|WP_002451949.1\|1380289_1381498_+\|sodium/glutamate-symporter	unknown	unknown	gnl\|CDD\|308938
NZ_CP054017.1\|WP_002451957.1\|1374066_1375692_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NZ_CP054017.1\|WP_002451950.1\|1379631_1379955_-\|PadR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224609
NZ_CP054017.1\|WP_002451959.1\|1371740_1372973_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224582
NZ_CP054017.1\|WP_002450255.1\|1383058_1384108_-\|type-2-isopentenyl-diphosphate-Delta-isomerase	unknown	unknown	gnl\|CDD\|235465
NZ_CP054017.1\|WP_172852399.1\|1381554_1382487_-\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP054017.1\|WP_002451953.1\|1377637_1378246_+\|DNA-3-methyladenine-glycosylase	unknown	unknown	gnl\|CDD\|225005
NZ_CP054017.1\|WP_037552511.1\|1371073_1371400_-\|YnfA-family-protein	unknown	unknown	gnl\|CDD\|235016

Protein	Function_ID	Function_description	E-value
NZ_CP054017.1\|WP_037551723.1\|1386142_1387045_-\|alpha/beta-hydrolase	gnl\|CDD\|223730	COG0657, Aes, Esterase/lipase [Lipid metabolism].	6.54512e-47
NZ_CP054017.1\|WP_172852397.1\|1382458_1382965_-\|transposase	gnl\|CDD\|225511	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.4248e-10
NZ_CP054017.1\|WP_002451958.1\|1372965_1373865_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226631	COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only].	1.01529e-153
NZ_CP054017.1\|WP_002450254.1\|1384110_1385100_-\|magnesium/cobalt-transporter-CorA	gnl\|CDD\|213365	cd12831, TmCorA-like_u2, Uncharacterized bacterial subfamily of the Thermotoga maritima CorA-like family. This subfamily belongs to the Thermotoga maritima CorA (TmCorA)-like family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. Members of the TmCorA-like family are found in all three kingdoms of life. It is a functionally diverse family which includes the CorA Co2+ transporter from the hyperthermophilic Thermotoga maritima, and three Saccharomyces cerevisiae proteins: two located in the plasma membrane: the Mg2+ transporter Alr1p/Swc3p and the putative Mg2+ transporter, Alr2p, and the vacuole membrane protein Mnr2p, a putative Mg2+ transporter. Thermotoga maritima CorA forms funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport by a related protein, Saccharomyces cerevisiae Alr1p. Natural variants in this signature sequence may be associated with the transport of different divalent cations. The functional diversity of the MIT superfamily may also be due to minor structural differences regulating gating, substrate selection, and transport.	6.85697e-137
NZ_CP054017.1\|WP_037552506.1\|1376503_1376695_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224393	COG1476, COG1476, Predicted transcriptional regulators [Transcription].	5.82282e-27
NZ_CP054017.1\|WP_002451954.1\|1376824_1377439_-\|DUF805-domain-containing-protein	gnl\|CDD\|225694	COG3152, COG3152, Predicted membrane protein [Function unknown].	6.77317e-18
NZ_CP054017.1\|WP_002451961.1\|1370033_1371044_-\|galactose-mutarotase	gnl\|CDD\|185696	cd09019, galactose_mutarotase_like, galactose mutarotase_like. Galactose mutarotase catalyzes the conversion of beta-D-galactose to alpha-D-galactose. Beta-D-galactose is produced by the degradation of lactose, a disaccharide composed of beta-D-glucose and beta-D-galactose. This epimerization reaction is the first step in the four-step Leloir pathway, which converts galactose into metabolically important glucose. This epimerization step is followed by the phosophorylation of alpha-D-galactose by galactokinase, an enzyme which can only act on the alpha anomer. A glutamate and a histidine residue of the galactose mutarotase have been shown to be critical for catalysis, the glutamate serves as the active site base to initiate the reaction by removing the proton from the C-1 hydroxyl group of the sugar substrate, and the histidine as the active site acid to protonate the C-5 ring oxygen. Galactose mutarotase is a member of the aldose-1-epimerase superfamily.	6.25616e-88
NZ_CP054017.1\|WP_002451963.1\|1368445_1369138_-\|ribose-5-phosphate-isomerase-A	gnl\|CDD\|184433	PRK13978, PRK13978, ribose 5-phosphate isomerase A.	8.49335e-144
NZ_CP054017.1\|WP_002450253.1\|1385214_1385700_+\|thioesterase-family-protein	gnl\|CDD\|372545	pfam13279, 4HBT_2, Thioesterase-like superfamily. This family contains a wide variety of enzymes, principally thioesterases. These enzymes are part of the Hotdog fold superfamily.	8.77461e-30
NZ_CP054017.1\|WP_002451951.1\|1379078_1379639_-\|DUF1700-domain-containing-protein	gnl\|CDD\|285278	pfam08006, DUF1700, Protein of unknown function (DUF1700). This family contains many hypothetical bacterial proteins and putative membrane proteins.	1.6527e-58
NZ_CP054017.1\|WP_002451949.1\|1380289_1381498_+\|sodium/glutamate-symporter	gnl\|CDD\|308938	pfam03616, Glt_symporter, Sodium/glutamate symporter.	1.99009e-155
NZ_CP054017.1\|WP_002451957.1\|1374066_1375692_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NZ_CP054017.1\|WP_002451950.1\|1379631_1379955_-\|PadR-family-transcriptional-regulator	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	1.91563e-24
NZ_CP054017.1\|WP_002451959.1\|1371740_1372973_-\|ABC-transporter-permease	gnl\|CDD\|224582	COG1668, NatB, ABC-type Na+ efflux pump, permease component [Energy production and conversion / Inorganic ion transport and metabolism].	2.00411e-53
NZ_CP054017.1\|WP_002450255.1\|1383058_1384108_-\|type-2-isopentenyl-diphosphate-Delta-isomerase	gnl\|CDD\|235465	PRK05437, PRK05437, isopentenyl pyrophosphate isomerase; Provisional.	0
NZ_CP054017.1\|WP_172852399.1\|1381554_1382487_-\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	2.36468e-45
NZ_CP054017.1\|WP_002451953.1\|1377637_1378246_+\|DNA-3-methyladenine-glycosylase	gnl\|CDD\|225005	COG2094, Mpg, 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair].	7.64475e-79
NZ_CP054017.1\|WP_037552511.1\|1371073_1371400_-\|YnfA-family-protein	gnl\|CDD\|235016	PRK02237, PRK02237, YnfA family protein.	2.31291e-45

>NZ_CP054017.1|WP_002451953.1|1377637_1378246_+|DNA-3-methyladenine-glycosylase
MDFRQRSTTDIAKALLGVRIIYQDDQQTYTGYIVETEAYLGIKDRAAHGYGGKRTPKVTSLYQSGGTIYAHVMHTHLLINFVTRDAGVPEGVLIRAIEPEDGIEAMKINRGKSGFEVTNGPGKWTKAFNIPRSIDGATLNQCRLSIDIKHRKYPKSIIESGRIGIPNKGEWTNKPLRYTVKGNPYVSRMKKSDFLNPDDTWK
>NZ_CP054017.1|WP_002451954.1|1376824_1377439_-|DUF805-domain-containing-protein
MREKVGFKASFKLFWSNYFNFKGRSRRSEYWFMQLWHLIFMCPAIILMIIGYPSLFLGAFNESSGVLGVGIICIFIGTIYILIYSLATIIPNLAILARRFHDTSRSMLIPMIAFVIGVLLNVFNIVINASGLIDNVGALITYYIIALICLVLGVYNIVVSCLDSKKESNKYGPSPKYEMNEPVNEPNYNPVDKAKLYRNTTNEI
>NZ_CP054017.1|WP_037552506.1|1376503_1376695_-|helix-turn-helix-transcriptional-regulator
MNRVKQYRAHQKMSQQELARRIGVSRQTINMIENDKYNPSLKLCINIAKVLSVTLNDLFWEGD
>NZ_CP054017.1|WP_052831771.1|1375760_1376132_-|hypothetical-protein
MFDHLVSSIGFMIAIIIMMFVSDKRIKISDTPTVPAMEKINTQDRMLNMIPNYNFSDEYERTRIIKAYSSNAIWQLIVLLFVSIIDIIVEHIMGHVPISSYVAIAVVVIAALCITYRIKKLKS
>NZ_CP054017.1|WP_002451957.1|1374066_1375692_+|ribulokinase
MSYSIGIDYGTASGRVILVNTSDGKIVSSYEETYQHGTIAEELGGETLPHNYFLQHAGDYHHVLENGVKHVLEESQVNKDEVVGIGVDFTSCTVVFLDENFKPLHMNEDLANHPHAYVKLWKHHGAQDEATQMVEANEKANQNWLDYYGHSVNSEWMIPKILEVKHKAPELLERAHYIMEAGDYMTSLLVNQNIRSNCGIGFKGFYDEVNGFNYDFFETVDPELPQIVKDKCEAPVIQIGDSAGSLSEYYQNLWGLSSNVQISPYMIDAHSGVLGAGAIEKGEFTPVIGTSTCHLMLDPKQEPIPSITGSVKDAIIPGLYAYEAGQAAVGDLFSYSERMAPQHIVEEAAKQDKSVLEYLETLASQIPVEDQHVVVLDWHNGNRSILSDSHLTGSVFGLTLQTPFEMVHRAYLESTAFGTKMIMKQFEDNDIPVHTVYASGGIPKKSRLLVDIYANVLNKKVVVLESSNATALGAAMLGANVGGAYDTLRETVQHMKQPVYYEKQPDPEKVKHYEKLFDKYQKLHDLLGREHPELSYIHETE
>NZ_CP054017.1|WP_002451958.1|1372965_1373865_-|ABC-transporter-ATP-binding-protein
MSLHIDHVTKKFNQFTAVNDISIHLEKGKMLGFLGRNGAGKTTTFRMILGLSEPTEGHITYDGHAIDQSMYNRIGYLPEERGLHPKMTVEDELTYLATLKGMSKSDIKKNIDYWLKRFAITENRHKRIDALSKGNQQKIQLLASMLHQPELLILDEPFSGLDPVNVELLKSAVKDLNDQGSTIIYSSHRMEHVEELCDDVCILNHGELVVSGDIHDVKASHGYKQVIIETDKSMPDIADIEGVLDIETNKRHIKVTIQDESVAENVYHQVISHGYVRRFQMLEPSLKDIFIDKVGDLHE
>NZ_CP054017.1|WP_002451959.1|1371740_1372973_-|ABC-transporter-permease
MNKFWATFGLTYKSKVKSKSFIIFMAIVIILMIALSNADKIMDMFKGDGDQIGIVTNSEPIYKAIKQQGNVIDEDASFKKVNKQEAKKQVKNEKLKEAYIIKLKDKQQLSATIISKESVSQEKEQKVNGVLTSIQSKLVASQLHLNNNDLKKLQSQSKVDSQVLSDKKNQQLNEGQKLLNLVLVYAILMLMFFIVFNYATQVAMEIATEKTSRVIEMIITSVSPITHIMAKIAGVIAVALTQIVMIVVVAIICIFAFDLKRMLKGFDVSMSHITWQVLIVGLLCMIIGILTYVLLAAILGSLATRIEDINQTLMPLTLFAMIAFYIAIFSMFKPEILLLKITSFIPFLAPFELLVRAQSTELQVWEIIVSILISVVVMLILLWIAVKTYKDSVLTFEKGLFNTIKKVMKK
>NZ_CP054017.1|WP_037552511.1|1371073_1371400_-|YnfA-family-protein
MMYSFLIFILAGVCEIGGGYLIWLWLREGQPSWLGVIGGLILILYGVIATLQTFPTFGRVYAAYGGVFIVMSLVWSMLIDKNMPDKYDILGALVCLIGVLIMLLPHRA
>NZ_CP054017.1|WP_002451961.1|1370033_1371044_-|galactose-mutarotase
MNVEIEHQRYGVDLIKIDNEETKIVFTNYGARIVSWKYHDNNIVLGNVVEADEFYFDNPFRFGATVGRYGGRISNATFNLEGETYKLEANDGQHHIHGGNHGLDSKLFDYEVIDDLGHVKIIFKTTLQETDDHYPGNMEIKVTHTYDADHCWTIQYEATSTKTTLFNPMNHVYFNLNRDNNVIDNHRVSSSKLNMYPLNEEHMISSDSTLDLQRIFNKDDIYFKDIFESSHDQIAQQVAQFNGLDHPFKVGEQQLSIDNDEFQLDVKTDMPYVVLYTFNQPKNWKSDANIYKAHSGLTIEAQYLPNDINLYGDQAYSILKANEMFYSQTSYQIHEK
>NZ_CP054017.1|WP_002451963.1|1368445_1369138_-|ribose-5-phosphate-isomerase-A
MNDVKQLKLMTLDDVLSQIEDGMTLGIGTGTTIELLVPKIAQLIKEKHYNIIGVCTSNKTAFLAKELNINIVDVNDVEKIDLAIDGADEVDPQLNLIKGGGGALFREKVIDEMADRFVVIADENKVVNYLGETFKLPVEVDKFNWYQVAKKIETIGGVTTQRRVTDDVPFTTDNGNYILDCALPKGIDPYEMHEFLIHITGVLETGYFLDVADQAIIGTQQGVKKMNRQD
>NZ_CP054017.1|WP_002451951.1|1379078_1379639_-|DUF1700-domain-containing-protein
MNKDTYLKQLISHLKHMDKDEKKDIYNEYETHFVSGKNEGKSEEEIAKHLGNPKMIAKELNASLAIDKVNEKKNAKNILSAILAVMGLGLLNFFIVLVPAFFLFMFLLTLVIFTITLLSAPVFLIIKYITEGVNSIILYDVYMSGFMFGVGLMLLAISIFLCHWILKLTIMYLKWNISIVKGSVHS
>NZ_CP054017.1|WP_002451950.1|1379631_1379955_-|PadR-family-transcriptional-regulator
MNTQFKKGALELIVLLIIKREDQYGYSLVQNISRYMTIAEGTVYPLLRRLVKNGELSTYYQPSSEGPARKYYRLTDQGQERLALLKEEWQMFSNAVNTFVEESERNE
>NZ_CP054017.1|WP_002451949.1|1380289_1381498_+|sodium/glutamate-symporter
MIELDAITTLCLACILYLIGQTIINHVSILRRICIPAPVIGGLIFAILVAVLDSFNIVKIKLDASFIQDFFMLAFFTTIGLGASLKLFKVGGKVMLLYFMFCGIMAFCQNVIGISLAKLLNIKPLLGLTAGSMSMEGGHGNAAAYGKTIQDMGIDSAVTAALAAATLGLVFGGLIGGPVVKFLIKRYNLKPEHSDDSFKNYGEVEYNQSLHEKYKPTQIFFIQFTILVFCMALGTYIGNTFTDLTNVNIPMYVGSMFVAVFVRNISEAAGFNIVDLKINEQIGDISLGIFLSLALMSIQLTEIYSLALPLIIIVLVQVVFMILFSIFVLFRGLGKDYDAAVMVGGFIGHGLGATPNAMANLDVITKKYGNSPKAYLVVPIVGAFLIDLIGVIIVMGFIQFFQ
>NZ_CP054017.1|WP_172852399.1|1381554_1382487_-|IS3-family-transposase
MLIKKVTSLNSILRDQTSEKVKIIKDIHETQNIGLNVLFKVANIAKSVYYYWVGRFKEPNKDETIIQAIKDICQTCQYTYGYRRVTQALANLGFKVNHKKVRKLMKSLDLSCTKFTHRNRRYKAYKGKVGKIANNLINRRFKTDRPYQKIVTDITEFKLKNDQKLYLSTFMDVYSLEIISFSMSDRPTLDIVMTPVQALINQKPKINFRSTIHSDQGWHYQHAKYVKCLKDNKIFQSMSRKGNCLDNALMENFFGLLKQEMFYGNQFQHFDQLKQAIHQYIDFYNNERIKTKLKGLSPKNYRRQTFETIY
>NZ_CP054017.1|WP_172852397.1|1382458_1382965_-|transposase
MGKHYKFDFKIKIVQEYLNRTQGYYALTKAYGLSSTSILRRWVDQYLKYGSKGLDKKLKNRSYSRDFKVSVLKFRQENHLSYRETANYFNISNPPMIANWQRKFDKEGILGLDNKQRGRPSKMKKKNRKVKQENHLPLKENEREELERLRTENEMLKAGIAYQKSYKP
>NZ_CP054017.1|WP_002450255.1|1383058_1384108_-|type-2-isopentenyl-diphosphate-Delta-isomerase
MSDFQREQRKNEHVEIAMAQHDATLSDFDKVRFVHHSIPNIDVDDVDLTTKTSEFNMKYPVYINAMTGGSEWTKQINEKLAIVARETGLAMAVGSTHAALRNPKMAESFTIVRETNPDGVIFSNVGADVPVDKAVKAVELLDAQALQIHVNSPQELVMPEGNREFANWMENIEAIVKAVNVPVIVKEVGFGMSKETYKSLLNVGVTYVDVSGRGGTNFVDIENERRSNKDMDYLSNWGQSTVESLLESSDFQDKLNVFASGGLRTPLDAVKCLALGAKAVGMSRPFLNQVEQAGITQTIEYVESFLDHMKKIMTMLDAKDINELTHKDMIFNTELLSWIEQRGLDIQRG
>NZ_CP054017.1|WP_002450254.1|1384110_1385100_-|magnesium/cobalt-transporter-CorA
MTMTIRYQTTTQPLTEVSRIEDVPSKATIVWYDFEDATEKENEFLRNHFDFNYLEIDDAINGIPRAKYKEYEDYQYIVFHSILTHDYAAIALNVFLQGNTLVTYHHKRFESLKKVVQDNQKHHVSDLDCADIVIHILDSMVDKYFNFVYDIEDKVYTFEDRHVDDRYSKSVMDNVFQLRSDLIKIKRVLFPMQELVDTIKSEGKLIIDTKHSMYIQHIDDHLIKQRNVIRTSQEMTNEIRENYEYYTSFRMNNIMQILTLVSVIFSPLTFIAGIYGMNFAYMPELNWHYGYFICLFVMLIISIILIIFFKRKNGFKPCNYKMNHLEKAV
>NZ_CP054017.1|WP_002450253.1|1385214_1385700_+|thioesterase-family-protein
MSQTFTVSKTVTEDFIDHNNHMHDAYYNIIFSDVIDDFNYSHGLSLDERAQYEYTTFTIEEHTSFLSELTLNEQYYVELYIYDYDYKRVHFFLRMIRQDGEVAATNEVMMMGIDQNKRRSAAFPEDYYQQIERYAQQEQQTIEWPKQLGHRIGIPHKGDQS
>NZ_CP054017.1|WP_002450252.1|1385696_1386095_+|hypothetical-protein
MSESIRYTIQNELLDLYDDVKVGLSDLNEQKALTINGPASKLFKRATRMSFIQGQKQAIDEMNQLLETYDEDEQFLEHYNQLASRIRNDNIEKVFSFSNLTDIPSHFEETIADLYFSKGQNFIIKHINSIME
>NZ_CP054017.1|WP_037551723.1|1386142_1387045_-|alpha/beta-hydrolase
MKNRFMNRVVNKYILHNRSIFFDNDEAVDKFFEKRQIENEKKHKQPSTLNVKANLDKLMLGDMQVFRFNFRHESKRKILYLHGGYNTLQPSPFHWRFIDKLTLSTIHEVVLPIYPKAPDYHIEDSEKAVRDVYNQLVDEVGAEHIIVMGDGSGGALALNLVQTLIENNEPVPRQLYLISPLLDATLSNKDITDELLGKDILISRFGVNEIMKRWAEGVPLTDKRVSPIYGPIEGLPPVYMFGGGREMINPDMHLFKEKLEMMGQEITFYEYPRMVHDFPLYPIRESHKVIKQITKALNNN

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Crispr_ID: NZ_CP054017_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP054017_2

1440421-1440510

Orphan

Consensus_repeat	Method
AATGCATAAGAGTCCCTAATCGCTAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP054017_2

>merge|NZ_CP054017|2|1440421-1440510|CRISPRCasFinder
AATGCATAAGAGTCCCTAATCGCTAATGCGATTTTCTCCTCTTCGGTTCGCCTTAGCTTGCGCTAATGCATAAGAGCCCCTAATCGCTAA

>NZ_CP054017|2|2|1440421-1440510|CRISPRCasFinder
AATGCATAAGAGTCCCTAATCGCTAA	TGCGATTTTCTCCTCTTCGGTTCGCCTTAGCTTGCGCT
AATGCATAAGAGCCCCTAATCGCTAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054017.1\|WP_002452442.1\|1438948_1439371_+\|pyridoxamine-5'-phosphate-oxidase-family-protein	unknown	unknown	gnl\|CDD\|226389
NZ_CP054017.1\|WP_002452435.1\|1430469_1431747_-\|YhgE/Pip-domain-containing-protein	unknown	unknown	gnl\|CDD\|224428
NZ_CP054017.1\|WP_002452443.1\|1439747_1440092_+\|DUF4889-domain-containing-protein	unknown	unknown	gnl\|CDD\|374445
NZ_CP054017.1\|WP_002450451.1\|1442153_1442636_-\|IS200/IS605-family-transposase	unknown	unknown	gnl\|CDD\|376616
NZ_CP054017.1\|WP_002450330.1\|1445259_1446411_-\|NarK/NasA-family-nitrate-transporter	unknown	unknown	gnl\|CDD\|225133
NZ_CP054017.1\|WP_002452431.1\|1427930_1428845_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
NZ_CP054017.1\|WP_037551779.1\|1446727_1447399_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP054017.1\|WP_002450335.1\|1448936_1449614_-\|respiratory-nitrate-reductase-subunit-gamma	unknown	unknown	gnl\|CDD\|376889
NZ_CP054017.1\|WP_002452444.1\|1440547_1441825_-\|cation:dicarboxylase-symporter-family-transporter	unknown	unknown	gnl\|CDD\|183075
NZ_CP054017.1\|WP_002452436.1\|1431909_1432518_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP054017.1\|WP_002452434.1\|1429926_1430352_+\|lipocalin-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|372819
NZ_CP054017.1\|WP_002450329.1\|1444789_1445206_+\|Hsp20/alpha-crystallin-family-protein	unknown	unknown	gnl\|CDD\|223149
NZ_CP054017.1\|WP_002450327.1\|1443310_1443940_-\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|380314
NZ_CP054017.1\|WP_002452438.1\|1433595_1435035_-\|PTS-sucrose-transporter-subunit-IIBC	unknown	unknown	gnl\|CDD\|131051
NZ_CP054017.1\|WP_002450328.1\|1444104_1444551_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP054017.1\|WP_002450334.1\|1448462_1448915_-\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|379056
NZ_CP054017.1\|WP_002452439.1\|1435223_1435595_+\|YbgA-family-protein	unknown	unknown	gnl\|CDD\|377982
NZ_CP054017.1\|WP_157748009.1\|1435707_1435875_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054017.1\|WP_002452437.1\|1432579_1433527_+\|magnesium-transporter-CorA-family-protein	unknown	unknown	gnl\|CDD\|213361
NZ_CP054017.1\|WP_002450326.1\|1442816_1443182_-\|DUF3139-domain-containing-protein	unknown	unknown	gnl\|CDD\|371476

Protein	Function_ID	Function_description	E-value
NZ_CP054017.1\|WP_002452442.1\|1438948_1439371_+\|pyridoxamine-5'-phosphate-oxidase-family-protein	gnl\|CDD\|226389	COG3871, COG3871, Uncharacterized stress protein (general stress protein 26) [General function prediction only].	3.93408e-43
NZ_CP054017.1\|WP_002452435.1\|1430469_1431747_-\|YhgE/Pip-domain-containing-protein	gnl\|CDD\|224428	COG1511, COG1511, Predicted membrane protein [Function unknown].	3.06003e-44
NZ_CP054017.1\|WP_002452443.1\|1439747_1440092_+\|DUF4889-domain-containing-protein	gnl\|CDD\|374445	pfam16230, DUF4889, Domain of unknown function (DUF4889). This family consists of uncharacterized proteins around 110 residues in length and is mainly found in various Staphylococcus aureus species. The function of this family is unknown.	2.52584e-24
NZ_CP054017.1\|WP_002450326.1\|1442816_1443182_-\|DUF3139-domain-containing-protein	gnl\|CDD\|371476	pfam11337, DUF3139, Protein of unknown function (DUF3139). This family of proteins with unknown function appears to be restricted to Firmicutes.	8.87185e-11
NZ_CP054017.1\|WP_002450330.1\|1445259_1446411_-\|NarK/NasA-family-nitrate-transporter	gnl\|CDD\|225133	COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism].	2.97069e-114
NZ_CP054017.1\|WP_002450451.1\|1442153_1442636_-\|IS200/IS605-family-transposase	gnl\|CDD\|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	1.76563e-45
NZ_CP054017.1\|WP_002450335.1\|1448936_1449614_-\|respiratory-nitrate-reductase-subunit-gamma	gnl\|CDD\|376889	pfam02665, Nitrate_red_gam, Nitrate reductase gamma subunit. This family is the gamma subunit of the nitrate reductase enzyme, the gamma subunit is a b-type cytochrome that receives electrons from the quinone pool. It then transfers these via the iron-sulfur clusters of the beta subunit to the molybdenum cofactor found in the alpha subunit. The nitrate reductase enzyme, EC:1.7.99.4 catalyzes the conversion of nitrite to nitrate via the reduction of an acceptor. The nitrate reductase enzyme is composed of three subunits. Nitrate is the most widely used alternative electron acceptor after oxygen.	1.83682e-111
NZ_CP054017.1\|WP_002452444.1\|1440547_1441825_-\|cation:dicarboxylase-symporter-family-transporter	gnl\|CDD\|183075	PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional.	2.40038e-167
NZ_CP054017.1\|WP_002452436.1\|1431909_1432518_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.21594e-10
NZ_CP054017.1\|WP_002452431.1\|1427930_1428845_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	6.3313e-47
NZ_CP054017.1\|WP_002450329.1\|1444789_1445206_+\|Hsp20/alpha-crystallin-family-protein	gnl\|CDD\|223149	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones].	5.25387e-24
NZ_CP054017.1\|WP_002450327.1\|1443310_1443940_-\|nitroreductase-family-protein	gnl\|CDD\|380314	cd02137, MhqN-like, nitroreductase family protein similar to the NAD(P)H nitroreductase MhqN. A diverse subfamily of the nitroreductase family containing uncharacterized proteins; includes nitroreductases MhqN, YodC, YdgI, DrgA. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer.	3.51836e-56
NZ_CP054017.1\|WP_002452438.1\|1433595_1435035_-\|PTS-sucrose-transporter-subunit-IIBC	gnl\|CDD\|131051	TIGR01996, Includes:_Phosphotransferase_enzyme_IIB_component, PTS system, sucrose-specific IIBC component. This model represents the fused enzyme II B and C components of the sucrose-specific PTS sugar transporter system. Sucrose is converted to sucrose-6-phosphate in the process of translocation into the cell. Some of these transporters lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). The exceptions to this rule are Staphylococci, Streptococci, Lactococci, Lactobacilli, etc. which contain their own A domain as a C-terminal fusion. This family is closely related to the trehalose transporting PTS IIBC enzymes and the B and C domains of each are described by subfamily-domain level TIGRFAMs models (TIGR00826 and TIGR00852, respectively).	0
NZ_CP054017.1\|WP_002450328.1\|1444104_1444551_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	4.30635e-17
NZ_CP054017.1\|WP_002452434.1\|1429926_1430352_+\|lipocalin-like-domain-containing-protein	gnl\|CDD\|372819	pfam13924, Lipocalin_5, Lipocalin-like domain. This family includes domains distantly related to lipocalins. However, they do contain the important GXW motif in the first strand. The protein in this family include aln5, which is involved in biosynthesis of alnumycin. The family also includes the ZFK protein from Trypanosoma brucei which is a protein kinase. This domain is at the C-terminus of that protein. The domain is also found as the C-terminal domain in StiJ a protein involved in producing stigmatellin. This domain has been assumed to catalyze a final cyclisation reaction.	1.52381e-41
NZ_CP054017.1\|WP_002452439.1\|1435223_1435595_+\|YbgA-family-protein	gnl\|CDD\|377982	pfam08349, DUF1722, Protein of unknown function (DUF1722). This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from E. coli.	8.21457e-21
NZ_CP054017.1\|WP_037551779.1\|1446727_1447399_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.65491e-76
NZ_CP054017.1\|WP_002452437.1\|1432579_1433527_+\|magnesium-transporter-CorA-family-protein	gnl\|CDD\|213361	cd12827, EcCorA_ZntB-like_u2, uncharacterized bacterial subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB family. A uncharacterized subfamily of the Escherichia coli CorA-Salmonella typhimurium ZntB (EcCorA-ZntB_like) family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes.The EcCorA-ZntB-like family includes the Mg2+ transporters Escherichia coli and Salmonella typhimurium CorAs, which can also transport Co2+, and Ni2+. Structures of the intracellular domain of EcCorA-ZntB-like family members, Vibrio parahaemolyticus and Salmonella typhimurium ZntB, form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA. Natural variants such as GVN and GIN, such as occur in some ZntB family proteins, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport.	2.16495e-108
NZ_CP054017.1\|WP_002450334.1\|1448462_1448915_-\|GAF-domain-containing-protein	gnl\|CDD\|379056	pfam13185, GAF_2, GAF domain.	4.95271e-06

>NZ_CP054017.1|WP_002452443.1|1439747_1440092_+|DUF4889-domain-containing-protein
MKSKKGLGFGLIAIMLIVCIVLVVAMMAGGKKETYYGVMKNDTTIDKMISEKDEKIEKNIKLPSDAKVSVKKEDFVMITKNEKTGKIAKVKKVDHDDVPHGLMTQIHDMGHMHM
>NZ_CP054017.1|WP_002452442.1|1438948_1439371_+|pyridoxamine-5'-phosphate-oxidase-family-protein
MDNQKATEAIEKVLDHSKVGVLSTAFNNKPNSRYMVFYNDELTLYTKTNINSIKVEEIEDNPYAYILLGYNETTNHSFVEIDATIEVVKDQKVIDWLWETQDKSFFDSNKDPELCVLKVIPKSIKLMNDKDLDTPFTIEL
>NZ_CP054017.1|WP_157748009.1|1435707_1435875_-|hypothetical-protein
MRYKAFCSGKPINGVPKAGLSAEGTQHREIGIPISANNASWANTHDSTKFGKQFK
>NZ_CP054017.1|WP_002452439.1|1435223_1435595_+|YbgA-family-protein
MKERGHIEQLWREEKYRVLLHSQKQYDAIREKLKSQVSYEEIRMMIEHAITIEPSQGSVINAYDHMWGYFKKWATDEEKQSAQKLKKLFINHDVSIHDLMSFLSILADKYNVQYIQQSTVLNE
>NZ_CP054017.1|WP_002452438.1|1433595_1435035_-|PTS-sucrose-transporter-subunit-IIBC
MNYKQSAEEILNAIGGEENLDSMAHCATRLRLILNDESKVDEEALSKMDVVKGTFSTGGQYQIIIGSGTVNKVFNEMEHITGKEASTTSEVKDKSTKNMNPLQRFVKMLSDIFVPIIPAIVAGGLLMGLNNLLTAKDLFYAGKSLIEVHSQFAGLADMINIFANAPFTLLPILIGFSAAKRFGGNPFLGAALGMILVHPSLMNAYDFPKAVEAGKAIPHWDVFGLHINQVGYQGQVLPMLVAAYILATIEKWLRKVVPTVLDNLLTPLLSIFITAFLTFLFVGPITRQLGYWLSDGLTWLYEFGGAIGGLIFGLLYAPIVITGMHHSFIAVETTLIADQAKTGGSFIFPIATMSNMAQGGAALASFFIIKNNKKLKGVASAAGISAVLGITEPAMFGVNLKLRYPFIGAIVGSGLGAAYISFFKVKAIALGTAGIPGFISINPNHGGWLHYLIGMVIAFVVSVIVTFVLSKRKKYKEVQ
>NZ_CP054017.1|WP_002452437.1|1432579_1433527_+|magnesium-transporter-CorA-family-protein
MITAYKHSNQINNEIIETPIDQQALWINVVEPDREEIEYLMDHYHLPEDFIRDPLDSEESARIEYDEDTGYSLIIIDLPLINSTNRSVLSFITIPLGIVIGNGIVMTICDAENEFLENFSRQDNINLKFHSRFALEILTTIANHYNRNLRLLNKSRIRIERELKNNITNKQLFKLMEVEKSLVYFLAALKGNDTIIKKLFRLPAIKRFEDDEELLEDLIIENNQAIETTELHQRILESITTSYASLLSNDMNTIMKTLTMFTVLLTLPTLVFSFFGMNVPLPLDDHSYISWIIVVGISLILVAIVSVYLWRKQKL
>NZ_CP054017.1|WP_002452436.1|1431909_1432518_+|TetR/AcrR-family-transcriptional-regulator
MKEDRRVRKTKSAIKYAFIQLLKERSLENITVQDIADKADINRGTFYLHYEDKYLLLTDMEDECIEQISKFTQFSEIQGDNVEMIATLFIDKVLRNIIQHVYDNLDFYNTILSLERKSRLEEKISDLIQYNMKHQVSVDNKIEGIPEMYFHSYVSGATISIIRYWVLDSNRISVDELVTHIFKIIYYGPLRIMAEQRYNHMN
>NZ_CP054017.1|WP_002452435.1|1430469_1431747_-|YhgE/Pip-domain-containing-protein
MNIFKSKLLWLTPIAIILILMIFAIAFYPAFNPKPKDMPIAIVNHDEGTSIQGEKMNIGDKLEDKLLDSDSKAIKWVKVDSEKDAKQGMEDEKYYGAAIFEKDFSKHAMSKTQKVVMDSKKAEMKEKVESGEVPAQQAQMMAKKMGNQSVDVKQAQLKTIVSQGSSLQGFQMATNVLSGMGDNINKQITKQSLQTLEKQNVKVDAKDIDSVTNPVKVDHEKINKVKDHQGDGNAPFLMFMPIWMGSIVISVLLFFAFRTSGNIKIAHRLIASVGQIIFTVIAAFLGSFAYVYFMGGALGFDFDHPNRVATFVALAIMGFVGLILGTMTWLGMKSVPIFFIAMFFSMQMVMLPKQMLPKFYQRYIVDWNPFVHYATSLKEIIYMNHHIELNSTMWMLIGFMIFGAVSSLLAAAIRKHSTKRTEVPS
>NZ_CP054017.1|WP_002452434.1|1429926_1430352_+|lipocalin-like-domain-containing-protein
MSQLQEQLIGTWSLVSYQDEDENGQIFYPLGKDATGFIMYNPDGYMSAQLMQQGRPAYASGDLHTGTKDVMAKAAHGYLAYAGKYELDEENQTVYHTMNVSMNPTWLGDTQPRIFKLEGHTLSIENGNNPNQKLVWQRVNH
>NZ_CP054017.1|WP_002452431.1|1427930_1428845_-|LysR-family-transcriptional-regulator
MINTNSVQYLEAVGRFGSISRAAKHLYISQPYLSKFIKDIETELGVTFINRESSPITLTYAGERYLDYMNQINYTYKEMKQELQNISELKKGRLVIGVNPILAAHTLYDILPEFIKAYPGIELKLIEEPSHRIEQLLIDNKIDIALTILPFYQGTFKYDVLYSEAIYLALPPDYALLLSQQSEEKNAEDIHDDIRNERFILLKPNMALRHLTDQILENHDITPQIAMETMSVDNALRLVNEGLGMTYVPESVKNSMSQFKGHFIKLDASKYANHVVLAYKYDKLNHLSKGAYAFLEMAKSIYRK
>NZ_CP054017.1|WP_002452444.1|1440547_1441825_-|cation:dicarboxylase-symporter-family-transporter
MALFKRKISLPVQVLIALVLGVVVGLILYGNEEAANYIKPFGDVFLNLIKMIVIPVVFCSLALSISNVGESKTVGRYGWKTILYFEIITTIAIGLGIIFGNLFKPGSGLDPSKLPKGDISKYQSSAHAAEQSTYGNHFIDTIVNIVPTNFFEALTKGELLPIIFFAVFFGLGLAAIGEKAEPVKSFLSGTLEAVFWMINKILKLAPLGVFAFICTTIITFGASALLPLLKLVLVVVFAMVFFVVVVLGIVARMCGISIFSIMKILKSEILLAFSTSSSEAVLPVMMKKMEKFGSPKEITSFVIPIGYTFNLDGSALYQSIAALFVAQMYGMHLTLTEQIVLMLTLMLTSKGMAAVPGTSIVVLLTTLGAMGLPAQGLALIIGVDRLLDMVRTVVNVMGNALSTVVIAKWENLYDKKQGQEYLKSL
>NZ_CP054017.1|WP_002450451.1|1442153_1442636_-|IS200/IS605-family-transposase
MSSDTNSLAHTKWNCKYHIVFAPKYRRQVIYGKIKKDIGIILRQLCERKGVEIIEAEACKDHIHMLVSIPPKIGVSSFVGYLKGKSSLMIFDRHANLKYRYGNRKFWCKGFYVDTVGRNKKVIENYIRNQLQEDIVADQISMEEYLDPFTGEEIKKRKKK
>NZ_CP054017.1|WP_002450326.1|1442816_1443182_-|DUF3139-domain-containing-protein
MSRKQKLIRIIIILIISLVLAFAFFFALKTYQGHKNIEMVDSYFKEHHLKDKIKKEETLYSAKKGVYYKEVIFKDEPKVTYVIQPISTNKGIFAEGFDTETKKSLKSAKHNYFNKNYKPSN
>NZ_CP054017.1|WP_002450327.1|1443310_1443940_-|nitroreductase-family-protein
MERISKFDDVLKGRKSVKVFDTEYIISHEEMDEMIQKATKAPSSVNMQPWRLMVVDSEEGKEKILPSFGMNSRQVNTSSAMIIVFGDLKNYEKAEQIYGDAVSKKHMTEEIKDKMLSWVLPHYKGLSREGMKDIVNIDSSLMAMQFMLVAKSHGYDTNPIGGFDKANIADVLGLDSDRFVPVVAIAVGKGAQEAHESVRLPLDDVRQYL
>NZ_CP054017.1|WP_002450328.1|1444104_1444551_+|MarR-family-transcriptional-regulator
MYVENSYLSKQLCFLFYVSSKEIIKKYSSYLKEYELTYTGYIVLMAIEEDEKLNIKTLGDRVFLDSGTLTPLLKKLEKKNYVVRTREEKDERNLQISLTDHGKSIKKPLSEVSLKVFGEFDIDVNEAKELINHLQMFVSKNFDKSTEK
>NZ_CP054017.1|WP_002450329.1|1444789_1445206_+|Hsp20/alpha-crystallin-family-protein
MPSNDFFNNAFLKNDPTDMFRDLGKQVFNQFSSQAFPANLYNESDHYLIEAELAGVKKENISLTFDHHTLTIKANKFLEPHHGQAQLNERSNGELVRRFEFEDVDKDLIKATFEDGVLNIRLPKQQHDSEDATTISIL
>NZ_CP054017.1|WP_002450330.1|1445259_1446411_-|NarK/NasA-family-nitrate-transporter
MDKTKGGFQLTLQTLSLVVGFMAWSIISPLMPFISQDIKISAGQLSIILAIPVILGSILRVPFGYLTNIIGAKWVFFCSFIVLLFPIYFLGQAQSPKMMMLSGFFLGVGGAIFSVGVTSIPKYFPKDKVGLANGIYGMGNIGTAISSFLAPPIAGIIGWQTTVRSYLIIIAIFAVLMFIFGDNHEPKVKVPLISQMKILFKNYKLYYTSLWYFITFGAFVAFGLFLPNYLVQHFGIDKVDAGIRSGIFIALATFLRPVGGILGDKLNAVKVLMVDFIIMITGALILGFSNHIALFTIGCLMISVCAGIGNGLIFKLVPSYFAKEAGSANGIVSMMGGLGGFFPPLVITYVTGVTGSSHLAFIFLAIFGLIALITMVHLNKKEA
>NZ_CP054017.1|WP_037551779.1|1446727_1447399_-|response-regulator-transcription-factor
MKIVIADDHAIVRTGFSMILNYQEDMEVVATAADGVEAYQKVLEFKPDVLLMDLSMPPGESELIATSKIHESFPETKILILTMYDDEEYLFHVLRNGAKGYILKNAPDEQLLLAIRTVYNGETYVDMKLTTSLVNEFVNSSNQEYTDTSDPFKVLSKRELEILPLIAKGYGNKEIAEKLFVSVKTVEAHKTHIMNKLELKSKPELVEYAMKKKLLEFQSPLSH
>NZ_CP054017.1|WP_002450334.1|1448462_1448915_-|GAF-domain-containing-protein
MMPDSMFESQSFQENIDRIRLEQGFDFAALAFYESASTYSPIKWQYVSGNNNDRYKLIILRKGRGLAGNVMKTGKRMIIANVDMALTPDEKVKFPILLSENLTAVIAIPLWYQQQVYGVMLFGQRNHKPLPINVYDIDIYKQLGIFNEEI
>NZ_CP054017.1|WP_002450335.1|1448936_1449614_-|respiratory-nitrate-reductase-subunit-gamma
MINQFLWVIYPYLCLAIFIIGHIARYKYDQFSWTAKSSELIEKKRLKWGSLLFHLGVIPVFFGHVVGLVIPKYWMDSLGIDEHMYHFGAVYIGSIFGIMTLIGMLLLTAKRITIKNVRRLSSFSDIFVNILLLIIIFMGCYSTIVTNIMHIDFNYRETISVWFRQLFMFKPHADLMANVPLQFKLHMVLGFTIFACWPFTRLVHVWSVPLSYTSRRYIIYRKNKL

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Crispr_ID: NZ_CP054017_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP054017_3

1446644-1446737

Orphan

Consensus_repeat	Method
AATGCATAAGAGCCCCTAATCGCTAAAGCGAT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP054017_3

>merge|NZ_CP054017|3|1446644-1446737|CRISPRCasFinder
AATGCATAAGAGCCCCTAATCGCTAAAGCGATTTTTCTCTTCGGTTCGCCTTAGCTTGCGCTAATGCATAAGAGCCCCTAATCGCTAATGCGAT

>NZ_CP054017|3|3|1446644-1446737|CRISPRCasFinder
AATGCATAAGAGCCCCTAATCGCTAAAGCGAT	TTTTCTCTTCGGTTCGCCTTAGCTTGCGCT
AATGCATAAGAGCCCCTAATCGCTAATGCGAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054017.1\|WP_002452442.1\|1438948_1439371_+\|pyridoxamine-5'-phosphate-oxidase-family-protein	unknown	unknown	gnl\|CDD\|226389
NZ_CP054017.1\|WP_002452443.1\|1439747_1440092_+\|DUF4889-domain-containing-protein	unknown	unknown	gnl\|CDD\|374445
NZ_CP054017.1\|WP_002450326.1\|1442816_1443182_-\|DUF3139-domain-containing-protein	unknown	unknown	gnl\|CDD\|371476
NZ_CP054017.1\|WP_002450330.1\|1445259_1446411_-\|NarK/NasA-family-nitrate-transporter	unknown	unknown	gnl\|CDD\|225133
NZ_CP054017.1\|WP_002450336.1\|1449606_1450182_-\|nitrate-reductase-molybdenum-cofactor-assembly-chaperone	unknown	unknown	gnl\|CDD\|225091
NZ_CP054017.1\|WP_002450451.1\|1442153_1442636_-\|IS200/IS605-family-transposase	unknown	unknown	gnl\|CDD\|376616
NZ_CP054017.1\|WP_002450335.1\|1448936_1449614_-\|respiratory-nitrate-reductase-subunit-gamma	unknown	unknown	gnl\|CDD\|376889
NZ_CP054017.1\|WP_002452444.1\|1440547_1441825_-\|cation:dicarboxylase-symporter-family-transporter	unknown	unknown	gnl\|CDD\|183075
NZ_CP054017.1\|WP_002450339.1\|1455578_1456505_-\|uroporphyrinogen-III-C-methyltransferase	unknown	unknown	gnl\|CDD\|381169
NZ_CP054017.1\|WP_002450329.1\|1444789_1445206_+\|Hsp20/alpha-crystallin-family-protein	unknown	unknown	gnl\|CDD\|223149
NZ_CP054017.1\|WP_002450327.1\|1443310_1443940_-\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|380314
NZ_CP054017.1\|WP_002450338.1\|1451717_1455401_-\|nitrate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|227346
NZ_CP054017.1\|WP_002450337.1\|1450174_1451728_-\|nitrate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|224063
NZ_CP054017.1\|WP_002450328.1\|1444104_1444551_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP054017.1\|WP_002450342.1\|1459287_1460010_-\|sirohydrochlorin-chelatase	unknown	unknown	gnl\|CDD\|225049
NZ_CP054017.1\|WP_002450343.1\|1460324_1461797_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|173855
NZ_CP054017.1\|WP_002450341.1\|1456812_1459218_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224171
NZ_CP054017.1\|WP_002450340.1\|1456495_1456810_-\|nitrite-reductase-small-subunit-NirD	unknown	unknown	gnl\|CDD\|239606
NZ_CP054017.1\|WP_157748009.1\|1435707_1435875_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054017.1\|WP_002450334.1\|1448462_1448915_-\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|379056

Protein	Function_ID	Function_description	E-value
NZ_CP054017.1\|WP_002452442.1\|1438948_1439371_+\|pyridoxamine-5'-phosphate-oxidase-family-protein	gnl\|CDD\|226389	COG3871, COG3871, Uncharacterized stress protein (general stress protein 26) [General function prediction only].	3.93408e-43
NZ_CP054017.1\|WP_002452443.1\|1439747_1440092_+\|DUF4889-domain-containing-protein	gnl\|CDD\|374445	pfam16230, DUF4889, Domain of unknown function (DUF4889). This family consists of uncharacterized proteins around 110 residues in length and is mainly found in various Staphylococcus aureus species. The function of this family is unknown.	2.52584e-24
NZ_CP054017.1\|WP_002450326.1\|1442816_1443182_-\|DUF3139-domain-containing-protein	gnl\|CDD\|371476	pfam11337, DUF3139, Protein of unknown function (DUF3139). This family of proteins with unknown function appears to be restricted to Firmicutes.	8.87185e-11
NZ_CP054017.1\|WP_002450330.1\|1445259_1446411_-\|NarK/NasA-family-nitrate-transporter	gnl\|CDD\|225133	COG2223, NarK, Nitrate/nitrite transporter [Inorganic ion transport and metabolism].	2.97069e-114
NZ_CP054017.1\|WP_002450336.1\|1449606_1450182_-\|nitrate-reductase-molybdenum-cofactor-assembly-chaperone	gnl\|CDD\|225091	COG2180, NarJ, Nitrate reductase delta subunit [Energy production and conversion].	2.7314e-50
NZ_CP054017.1\|WP_002450451.1\|1442153_1442636_-\|IS200/IS605-family-transposase	gnl\|CDD\|376616	pfam01797, Y1_Tnp, Transposase IS200 like. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases for IS200 from E. coli.	1.76563e-45
NZ_CP054017.1\|WP_002450335.1\|1448936_1449614_-\|respiratory-nitrate-reductase-subunit-gamma	gnl\|CDD\|376889	pfam02665, Nitrate_red_gam, Nitrate reductase gamma subunit. This family is the gamma subunit of the nitrate reductase enzyme, the gamma subunit is a b-type cytochrome that receives electrons from the quinone pool. It then transfers these via the iron-sulfur clusters of the beta subunit to the molybdenum cofactor found in the alpha subunit. The nitrate reductase enzyme, EC:1.7.99.4 catalyzes the conversion of nitrite to nitrate via the reduction of an acceptor. The nitrate reductase enzyme is composed of three subunits. Nitrate is the most widely used alternative electron acceptor after oxygen.	1.83682e-111
NZ_CP054017.1\|WP_002452444.1\|1440547_1441825_-\|cation:dicarboxylase-symporter-family-transporter	gnl\|CDD\|183075	PRK11283, gltP, glutamate/aspartate:proton symporter; Provisional.	2.40038e-167
NZ_CP054017.1\|WP_002450339.1\|1455578_1456505_-\|uroporphyrinogen-III-C-methyltransferase	gnl\|CDD\|381169	cd11642, SUMT, Uroporphyrin-III C-methyltransferase (also known as S-Adenosyl-L-methionine:uroporphyrinogen III methyltransferase, SUMT). SUMT is an enzyme of the cobalamin and siroheme biosynthetic pathway. It catalyzes the first of three steps leading to the formation of siroheme from uroporphyrinogen III; it transfers two methyl groups from S-adenosyl-L-methionine to the C-2 and C-7 atoms of uroporphyrinogen III to yield precorrin-2 via the intermediate formation of precorrin-1. Precorrin-2 is also a precursor for the biosynthesis of vitamin B12, coenzyme F430, siroheme and heme d1. This family includes proteins in which the SUMT domain is fused to other functional domains, such as to a uroporphyrinogen-III synthase domain to form bifunctional uroporphyrinogen-III methylase/uroporphyrinogen-III synthase, or to a dual function dehydrogenase-chelatase domain, as in the case of the multifunctional S-adenosyl-L-methionine (SAM)-dependent bismethyltransferase/dehydrogenase/ferrochelatase CysG, which catalyzes all three steps that transform uroporphyrinogen III into siroheme.	8.83823e-104
NZ_CP054017.1\|WP_002450329.1\|1444789_1445206_+\|Hsp20/alpha-crystallin-family-protein	gnl\|CDD\|223149	COG0071, IbpA, Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones].	5.25387e-24
NZ_CP054017.1\|WP_002450327.1\|1443310_1443940_-\|nitroreductase-family-protein	gnl\|CDD\|380314	cd02137, MhqN-like, nitroreductase family protein similar to the NAD(P)H nitroreductase MhqN. A diverse subfamily of the nitroreductase family containing uncharacterized proteins; includes nitroreductases MhqN, YodC, YdgI, DrgA. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer.	3.51836e-56
NZ_CP054017.1\|WP_002450338.1\|1451717_1455401_-\|nitrate-reductase-subunit-alpha	gnl\|CDD\|227346	COG5013, NarG, Nitrate reductase alpha subunit [Energy production and conversion].	0
NZ_CP054017.1\|WP_002450337.1\|1450174_1451728_-\|nitrate-reductase-subunit-beta	gnl\|CDD\|224063	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion].	0
NZ_CP054017.1\|WP_002450328.1\|1444104_1444551_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	4.30635e-17
NZ_CP054017.1\|WP_002450342.1\|1459287_1460010_-\|sirohydrochlorin-chelatase	gnl\|CDD\|225049	COG2138, COG2138, Sirohydrochlorin ferrochelatase [Inorganic ion transport and metabolism].	4.61857e-33
NZ_CP054017.1\|WP_002450343.1\|1460324_1461797_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|173855	cd08490, PBP2_NikA_DppA_OppA_like_3, The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold. This CD represents the substrate-binding domain of an uncharacterized ATP-binding cassette (ABC) type nickel/dipeptide/oligopeptide-like transporter. The oligopeptide-binding protein OppA and the dipeptide-binding protein DppA show significant sequence similarity to NikA, the initial nickel receptor. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	4.12486e-169
NZ_CP054017.1\|WP_002450341.1\|1456812_1459218_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224171	COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion].	0
NZ_CP054017.1\|WP_002450340.1\|1456495_1456810_-\|nitrite-reductase-small-subunit-NirD	gnl\|CDD\|239606	cd03530, Rieske_NirD_small_Bacillus, Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.	1.32519e-53
NZ_CP054017.1\|WP_002450334.1\|1448462_1448915_-\|GAF-domain-containing-protein	gnl\|CDD\|379056	pfam13185, GAF_2, GAF domain.	4.95271e-06

>NZ_CP054017.1|WP_002450330.1|1445259_1446411_-|NarK/NasA-family-nitrate-transporter
MDKTKGGFQLTLQTLSLVVGFMAWSIISPLMPFISQDIKISAGQLSIILAIPVILGSILRVPFGYLTNIIGAKWVFFCSFIVLLFPIYFLGQAQSPKMMMLSGFFLGVGGAIFSVGVTSIPKYFPKDKVGLANGIYGMGNIGTAISSFLAPPIAGIIGWQTTVRSYLIIIAIFAVLMFIFGDNHEPKVKVPLISQMKILFKNYKLYYTSLWYFITFGAFVAFGLFLPNYLVQHFGIDKVDAGIRSGIFIALATFLRPVGGILGDKLNAVKVLMVDFIIMITGALILGFSNHIALFTIGCLMISVCAGIGNGLIFKLVPSYFAKEAGSANGIVSMMGGLGGFFPPLVITYVTGVTGSSHLAFIFLAIFGLIALITMVHLNKKEA
>NZ_CP054017.1|WP_002450329.1|1444789_1445206_+|Hsp20/alpha-crystallin-family-protein
MPSNDFFNNAFLKNDPTDMFRDLGKQVFNQFSSQAFPANLYNESDHYLIEAELAGVKKENISLTFDHHTLTIKANKFLEPHHGQAQLNERSNGELVRRFEFEDVDKDLIKATFEDGVLNIRLPKQQHDSEDATTISIL
>NZ_CP054017.1|WP_002450328.1|1444104_1444551_+|MarR-family-transcriptional-regulator
MYVENSYLSKQLCFLFYVSSKEIIKKYSSYLKEYELTYTGYIVLMAIEEDEKLNIKTLGDRVFLDSGTLTPLLKKLEKKNYVVRTREEKDERNLQISLTDHGKSIKKPLSEVSLKVFGEFDIDVNEAKELINHLQMFVSKNFDKSTEK
>NZ_CP054017.1|WP_002450327.1|1443310_1443940_-|nitroreductase-family-protein
MERISKFDDVLKGRKSVKVFDTEYIISHEEMDEMIQKATKAPSSVNMQPWRLMVVDSEEGKEKILPSFGMNSRQVNTSSAMIIVFGDLKNYEKAEQIYGDAVSKKHMTEEIKDKMLSWVLPHYKGLSREGMKDIVNIDSSLMAMQFMLVAKSHGYDTNPIGGFDKANIADVLGLDSDRFVPVVAIAVGKGAQEAHESVRLPLDDVRQYL
>NZ_CP054017.1|WP_002450326.1|1442816_1443182_-|DUF3139-domain-containing-protein
MSRKQKLIRIIIILIISLVLAFAFFFALKTYQGHKNIEMVDSYFKEHHLKDKIKKEETLYSAKKGVYYKEVIFKDEPKVTYVIQPISTNKGIFAEGFDTETKKSLKSAKHNYFNKNYKPSN
>NZ_CP054017.1|WP_002450451.1|1442153_1442636_-|IS200/IS605-family-transposase
MSSDTNSLAHTKWNCKYHIVFAPKYRRQVIYGKIKKDIGIILRQLCERKGVEIIEAEACKDHIHMLVSIPPKIGVSSFVGYLKGKSSLMIFDRHANLKYRYGNRKFWCKGFYVDTVGRNKKVIENYIRNQLQEDIVADQISMEEYLDPFTGEEIKKRKKK
>NZ_CP054017.1|WP_002452444.1|1440547_1441825_-|cation:dicarboxylase-symporter-family-transporter
MALFKRKISLPVQVLIALVLGVVVGLILYGNEEAANYIKPFGDVFLNLIKMIVIPVVFCSLALSISNVGESKTVGRYGWKTILYFEIITTIAIGLGIIFGNLFKPGSGLDPSKLPKGDISKYQSSAHAAEQSTYGNHFIDTIVNIVPTNFFEALTKGELLPIIFFAVFFGLGLAAIGEKAEPVKSFLSGTLEAVFWMINKILKLAPLGVFAFICTTIITFGASALLPLLKLVLVVVFAMVFFVVVVLGIVARMCGISIFSIMKILKSEILLAFSTSSSEAVLPVMMKKMEKFGSPKEITSFVIPIGYTFNLDGSALYQSIAALFVAQMYGMHLTLTEQIVLMLTLMLTSKGMAAVPGTSIVVLLTTLGAMGLPAQGLALIIGVDRLLDMVRTVVNVMGNALSTVVIAKWENLYDKKQGQEYLKSL
>NZ_CP054017.1|WP_002452443.1|1439747_1440092_+|DUF4889-domain-containing-protein
MKSKKGLGFGLIAIMLIVCIVLVVAMMAGGKKETYYGVMKNDTTIDKMISEKDEKIEKNIKLPSDAKVSVKKEDFVMITKNEKTGKIAKVKKVDHDDVPHGLMTQIHDMGHMHM
>NZ_CP054017.1|WP_002452442.1|1438948_1439371_+|pyridoxamine-5'-phosphate-oxidase-family-protein
MDNQKATEAIEKVLDHSKVGVLSTAFNNKPNSRYMVFYNDELTLYTKTNINSIKVEEIEDNPYAYILLGYNETTNHSFVEIDATIEVVKDQKVIDWLWETQDKSFFDSNKDPELCVLKVIPKSIKLMNDKDLDTPFTIEL
>NZ_CP054017.1|WP_157748009.1|1435707_1435875_-|hypothetical-protein
MRYKAFCSGKPINGVPKAGLSAEGTQHREIGIPISANNASWANTHDSTKFGKQFK
>NZ_CP054017.1|WP_002450334.1|1448462_1448915_-|GAF-domain-containing-protein
MMPDSMFESQSFQENIDRIRLEQGFDFAALAFYESASTYSPIKWQYVSGNNNDRYKLIILRKGRGLAGNVMKTGKRMIIANVDMALTPDEKVKFPILLSENLTAVIAIPLWYQQQVYGVMLFGQRNHKPLPINVYDIDIYKQLGIFNEEI
>NZ_CP054017.1|WP_002450335.1|1448936_1449614_-|respiratory-nitrate-reductase-subunit-gamma
MINQFLWVIYPYLCLAIFIIGHIARYKYDQFSWTAKSSELIEKKRLKWGSLLFHLGVIPVFFGHVVGLVIPKYWMDSLGIDEHMYHFGAVYIGSIFGIMTLIGMLLLTAKRITIKNVRRLSSFSDIFVNILLLIIIFMGCYSTIVTNIMHIDFNYRETISVWFRQLFMFKPHADLMANVPLQFKLHMVLGFTIFACWPFTRLVHVWSVPLSYTSRRYIIYRKNKL
>NZ_CP054017.1|WP_002450336.1|1449606_1450182_-|nitrate-reductase-molybdenum-cofactor-assembly-chaperone
MINFDNLYRYQDSLGYIAMQLCFPEKKTFNENIFNEVIDPSHPGYEDLIAFREQMMQYTLSEIQQIYTDTFDFSKKAPLYMTYNQFDTQKERGQMLAKLKVLYEMFGLKMVDNELSDYLPLMLQFLQTIEWRGDERAEENIQLVIMIIEDGTFVMANELGKQNHPYGYVIQALRKTLKLCLEVPEGVAQHD
>NZ_CP054017.1|WP_002450337.1|1450174_1451728_-|nitrate-reductase-subunit-beta
MKIKAQIAMVLNLDKCIGCHTCSVTCKNTWTNRPGAEYMWFNNVETKPGTGYPKRWEDQEHYKGGWVLNRKGRLQLKSGSKWSKIALGKIFYNPDMPLIQDYYEPWNYNYEHLTTAKAGQHSPVARAYSVISGEKMDIEWGPNWEDDLAGGHVTGPKDPNIQKIEEDIKFQFDETFMMYLPRLCEHCLNPSCVASCPSGAMYKRDEDGIVLIDQDACRGWRYCMTGCPYKKVYFNWKTNKAEKCTFCFPRIEAGMPTVCSETCTGRMRYLGVLLYDADRVEEMASTENEQDLYEKQLELFLDPFDEEVIAQAEKDDVNHEWIEAAQQSPIYKLAIEYKLAFPLHPEYRTMPMVWYCPPLSPIMSYFEGKNSEQDPDMIFPAIEEMRLPIEYLANMFTAGATKPVKQALQKMAMMRSYMRAQVTQKDFDVERLTQLGLTERQTKDMYRLLGLAKYEERFVIPTTHKETYLDTYHAQGSQGYGGENFGVNCEGCGVAVATDKSGQDIYNERFYGGIFRD
>NZ_CP054017.1|WP_002450338.1|1451717_1455401_-|nitrate-reductase-subunit-alpha
MGKFGLNFFKPTEKFNGNWSVLESKSREWEKMYRERWSHDKEVRTTHGVNCTGSCSWKVFVKNGVITWENQQTDYLSCGPEMPEYEPRGCPRGASFSWYEYSPLRVKYPYIRGQLLELWQEALEENHGNKIAAWASIVEDEEKAKRYKQARGMGGHVRSNWKDVTDIIAAQLLYTIKKDGPDRIAGFTPIPAMSMVSYAAGARFINLLGGEMLSFYDWYADLPPASPQIWGEQTDVPESSEWYNAAYLIMWGSNVPLTRTPDAHFMTEVRYKGTKVVSIAPDYAENVKFADNWLAPNPGTDAAVAQAMTHVILQEYYINNPNSRFINYAKQYTDMPFVLMLDQDDNGLKAGRFLRASDLGQDTTNGEWKPVLFDNLSNQLVVPNGTMGQRWEDGKQWNLKLEDEDGNVIQPSLSMDESDFELQQIQFPYFDSNGDGVFERPIPTKKIKLANGDERYITTVYDLMVSQYGIKRFNHELEATGYDDSHSKYTPAWQEDITGIKSSLVVQVAKEFAQNAIDTEGRSMIIMGAGINHWFNSDTIYRSILNLIMLCGCQGVNGGGWAHYVGQEKCRPIEGWNTIAFAKDWQGPPRLQNGTSWFYFATDQWKYEESNVDKLKSPLAKHIKHQHPADYNVTAAKLGWLPSYPQFNKNSLLFAEEAKENGDDSNEAILKRAINEVKTKQTKFAVEDPDLRKNHPKTLFVWRSNLISSSAKGQEYFMKHLLGTKSGLLASPNEDDKPDEIQWREETTGKLDLLVSLDFRMTATPLYSDIVLPAATWYEKHDLSSTDMHPYVHPFNPAIDPLWESRSDWDIYKTLAKAVSEMAKDYLSGTYKDVVTTPLGHDSKQEIATPLGIVKDWSKGEIDAIPGKTMPNFTIVERDYTLIYDKYVSVGPKLETDNVGAHGVSFSVKEQYEELKSMLGTWNDKDPNSIKNDKPRIHSARNVADAMLNISSATNGKLSQKSYQDLEKQTGMTLTDISSERASEKITFLNIGSQPREVIPTAVFPGSNKNGRRYSPFTTNIERLVPFRTLTGRQSYYIDHEVFQQFGESLPIYKPTLPPMVFGTKDKQIKGGTDTLILRYLTPHGKWNIHSMYQDNKHMLTLFRGGPTVWISDEDAKEHNIQDNDWLEVYNRNGVVTARAVISHRMPKGTMFMYHAQDKHIQTPGSEITDTRGGSHNAPTRIHLKPTQLIGGYAQISYHFNYYGPIGNQRDVYVAVRKMKEVNWLED
>NZ_CP054017.1|WP_002450339.1|1455578_1456505_-|uroporphyrinogen-III-C-methyltransferase
MSINEYGTVYLVGAGPGNPSLLTKRAQRLIENADIILYDRLVNPFILQYAKPEIEIVDVGKKPYTKHIQQESINQKTIEAASKHHHVVRLKGGDPAIFGRVQEEVEALNKLNIDFEIVPGVTSASAAAQSMNLGLTMRSIAKNVTFSTGHFKDSKDNDIDISTLLNKGTLAVYMGVKRLPRIIKQIRQYTSYDYPIAIVFRASLFDEKILTGNISNIEQKLTQYNVEGLPGICIIGDIINYSLPQNKAKHTEIIYIVKGNRNHALEKCELLYEQGYGSMIEVDETYHYSQQALYKSVLKQYAHQFIEI
>NZ_CP054017.1|WP_002450340.1|1456495_1456810_-|nitrite-reductase-small-subunit-NirD
MKNMQKIKVSRIDELTPLIGKKVFVNDKEIGLFLTNEGEIFAVNNICPHKEGPLSEGTVSGSYVYCPLHDQKIDLKTGNVQEPDTGCVKTYPVEIIDGDIFICL
>NZ_CP054017.1|WP_002450341.1|1456812_1459218_-|NAD(P)/FAD-dependent-oxidoreductase
MTKNKLVMIGNGMAGLRTIEEILDRDPQRFEITIIGKEDYPNYNRIMLSNILQNKMTVEETIMNSYDWYAEHDIKLINNDPVTILDRANKTVITESGQSFEYDQCIIATGSKAFVLPIPGSDLPSVIGWRTIDDTKRMMEIAQTKQKAIVIGGGLLGLECARGLLDQGMEVTVIHLAEWLMEMQLDRKAGQMLKNDLEQQGMRFELQANTQEILGDKDVEAVRLADGRVLEADLVVMAVGIRPYTEVAKAAGLEVNRGIIVNAYMQTSDPNIFAVGECAECEGKVYGLVAPLYEQGIVLADYLTQKETNGYHGSTTFTSLKVSGCDLYSAGTIEETEDIHGIEIFNSIDNHYKKVFLKDGEVVGVVLYGNTDDGSRFYNMMKKHESIEDYTLVSLLTKGGEDANVSIEDMADDETICGCNGVNKGTIVEEITKNGLTSVAEVTKMTKAGNSCGKCKGQIADILQYALGDDFVASKPTGICACTDLSRDQIVTQIRAKGLKTSKEVRHVLNFKDKNGCPKCRPAINYYLNMIYPYEHKDEKESRFANERYHANIQNDGTFSVIPQMRGGVTDADQLIRLGEVAKKYNVPLVKVTGSQRVGLYGLKKEELPSVWEDLGMRSASAYGKKTRSVKSCVGKEFCRFGTQYTTQLGIRLEKTFEYIDTPHKFKMGVSGCPRSCVESGVKDFGVISVENGFQLYIGGNGGTEVTKGQLLTTVETEDEVIRICGALMQYYRETGIYSERTAPWLERLGFENVKEVLLDPERQQALFDRVMEAKQAIQDEPWQAIVNDKASQKIFEVERV
>NZ_CP054017.1|WP_002450342.1|1459287_1460010_-|sirohydrochlorin-chelatase
MVGNILVAHGMRKGNQNKALEEFITTLLKDEEYHYELAFLESDTQSLEITMEKMIEKGITQFRIVPLLIFRAMHYIGDIPNILSEMKEKYPHISSQMSEPLGTHPYMKSLVERRIDDVQLVDQSSKTATVIIAHGNGSGRFTKAHDELKAFVKTIDSDRPVYARALYGDLTFRNDLDEISKQYDELIIVPLFLFDGRLVNKVKRLIDDMAIHCILHITPSINFDDTLRLIIRERLEALRF
>NZ_CP054017.1|WP_002450343.1|1460324_1461797_+|ABC-transporter-substrate-binding-protein
MKRFTILIIIVSFILASCSSNATNKKNTLNVEIPLKTTSIAPYETDVPVKIGALESLFKMSKDGKVKPLLVKSFKQKSDDTLTLKIKDDIHFQNGHKLTGDAVKRSLEQGVKKSDLLSGSLPIDKITAKGQDVTIKTKEPYPELKSELASPFAAIYDTQAKGKVSDQPVGTGPYKIDKYQRSQKIQLSKYKDYWQGTPKLSKINVTYHEDGNTRVNHLLSGKSDLTTDVTIDQINDIKKSNKANIQSTSGFRTHLLLYNHDSKKMNKNVREAFDVVINRKEIAKNVSKNYAKPASGPFNDRLKHIKDGKVQPQDINKARKLLAKEGYTKDHPLKINIVTYDGRPELPKIGQVIQSEAKKANIDVKLRNVDDIEGYLKDKDAWDASMYSYLTVPRGDTGYFFNTAYLPKGANNKGNYNNKEVTQQIKQLNQTFGQPEREQLTNQILKTSDKDIPNSYITYNDQIDGVSKNVKNFNVTPESIYLIDYKVDKK

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP054017_3	3.1\|1446676\|30\|NZ_CP054017\|CRISPRCasFinder	1446676-1446705	30	NZ_CP032837	Klebsiella pneumoniae strain INF237 plasmid pINF237_04, complete sequence	12996-13025	5	0.833
NZ_CP054017_1	1.1\|1378543\|30\|NZ_CP054017\|CRISPRCasFinder	1378543-1378572	30	NZ_CP017944	Phyllobacterium zundukense strain Tri-48 plasmid unnamed4, complete sequence	284262-284291	9	0.7

1. spacer 3.1|1446676|30|NZ_CP054017|CRISPRCasFinder matches to NZ_CP032837 (Klebsiella pneumoniae strain INF237 plasmid pINF237_04, complete sequence) position: , mismatch: 5, identity: 0.833

ttttctcttcggttcgccttagcttgcgct-	CRISPR spacer
atttttcttcggttcgctttagc-tgcgccc	Protospacer
 ***.************.***** *****.

2. spacer 1.1|1378543|30|NZ_CP054017|CRISPRCasFinder matches to NZ_CP017944 (Phyllobacterium zundukense strain Tri-48 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.7

gccgttggtgaattcaatgtgagttgttga	CRISPR spacer
atgatcggtgaattcaatgtgagtcgtact	Protospacer
.. .*.******************.**

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

189739 : 198209

Synechococcus_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002450719.1\|189739_190222_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	1.1e-18	42.0
WP_075778637.1\|190169_191336_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
WP_002450717.1\|191336_192041_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	G8EYA2	Synechococcus_phage	2.5e-48	43.3
WP_002450716.1\|192040_192301_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_002450715.1\|192302_192974_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA
WP_002450714.1\|192966_195156_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.1e-139	39.2
WP_002450713.1\|195134_196619_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	5.9e-47	33.0
WP_002450712.1\|196611_197640_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	7.9e-67	44.7
WP_002450711.1\|197642_198209_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.2e-29	40.1

DBSCAN-SWA_2

755229 : 764256

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002451806.1\|755229_755748_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	2.5e-29	46.5
WP_002451805.1\|755762_758045_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	1.9e-65	29.7
WP_002451804.1\|758166_760446_-	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	8.2e-32	33.3
WP_002451803.1\|760787_761048_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	3.3e-06	42.6
WP_002451802.1\|761063_762203_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	1.4e-85	46.1
WP_002451801.1\|762224_763250_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_002451800.1\|763251_764256_-	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	1.2e-06	32.5

DBSCAN-SWA_3

801007 : 808576

Bacillus_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_172852388.1\|801007_801337_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	8.5e-15	39.4
WP_172852390.1\|801377_801818_+\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	3.6e-29	45.8
WP_002452224.1\|801882_802485_-	dephospho-CoA kinase	NA	NA	NA	NA
WP_002452223.1\|802500_803373_-	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	F8WPX6	Bacillus_phage	1.3e-30	33.6
WP_002452222.1\|803387_806018_-	DNA polymerase I	A8E2B3	Enterococcus_phage	2.2e-44	31.8
WP_002452221.1\|806171_807866_-	PAS domain-containing protein	W8CYF6	Bacillus_phage	1.7e-29	35.7
WP_002452220.1\|807865_808576_-	response regulator transcription factor	Q6XM27	Feldmannia_irregularis_virus	6.3e-07	29.5

DBSCAN-SWA_4

889666 : 925445

Staphylococcus_phage(96.15%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002452154.1\|889666_896011_-	DUF1542 domain-containing protein	A0A2H4PQU6	Staphylococcus_phage	3.1e-129	50.2
WP_002452153.1\|896315_896627_-	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	1.9e-32	64.1
WP_002452152.1\|896651_899066_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	87.5
WP_002452151.1\|899349_900540_-	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	2.2e-174	78.1
WP_002452150.1\|900646_901600_+	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	3.0e-68	84.0
WP_002452149.1\|901596_902160_+	class I SAM-dependent methyltransferase	A0A2H4PQV0	Staphylococcus_phage	4.9e-71	68.6
WP_002452148.1\|902212_902614_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_002452147.1\|903016_903844_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_002452146.1\|904075_905077_+	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	1.8e-145	79.6
WP_002452145.1\|905343_905802_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	2.9e-61	86.7
WP_002452144.1\|905814_906996_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	6.7e-179	77.6
WP_002452143.1\|907010_907643_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	2.8e-83	73.3
WP_002452142.1\|907649_908693_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	7.8e-139	67.6
WP_002452141.1\|909186_910683_-	FAD/NAD(P)-binding protein	A0A2H4PQX2	Staphylococcus_phage	4.7e-20	81.0
WP_002452140.1\|911000_911855_-	glucosaminidase domain-containing protein	A0A1W6JNR1	Staphylococcus_phage	1.4e-37	41.8
WP_002452139.1\|912115_912340_-	hypothetical protein	NA	NA	NA	NA
WP_002452138.1\|912532_913021_+	sigma-70 family RNA polymerase sigma factor	A0A2H4PQT5	Staphylococcus_phage	2.7e-33	50.7
WP_002452137.1\|913025_913472_+	competence protein ComK	NA	NA	NA	NA
WP_002452136.1\|913446_913902_-	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	6.2e-24	59.9
WP_002452135.1\|914106_914820_-	transaldolase	M1PR54	Cyanophage	4.2e-19	34.8
WP_002452134.1\|915075_915381_+	hypothetical protein	NA	NA	NA	NA
WP_037552583.1\|915519_915882_+	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	4.9e-32	62.4
WP_002452132.1\|915878_916238_+	CrcB family protein	NA	NA	NA	NA
WP_002452131.1\|916296_917133_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	7.7e-105	67.6
WP_002452130.1\|917284_918193_-	NERD domain-containing protein	A0A2H4PQQ8	Staphylococcus_phage	2.3e-110	81.0
WP_002452129.1\|918312_919512_-	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	5.2e-195	86.6
WP_002452128.1\|919889_921482_+	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	2.2e-289	90.4
WP_172852446.1\|921515_922265_-	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	1.1e-107	77.1
WP_002452126.1\|922275_922749_-	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	2.1e-51	63.1
WP_002452125.1\|922809_923049_+	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	8.8e-38	90.1
WP_002452124.1\|923032_924046_-	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	3.0e-103	56.5
WP_002452123.1\|924032_925445_-	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	4.3e-172	63.0

DBSCAN-SWA_5

952114 : 1023518

uncultured_Caudovirales_phage(84.48%)

tRNA,protease,integrase,holin,portal,terminase,tail,capsid

attL 973665:973682|attR 1027287:1027304

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002452097.1\|952114_952585_-\|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	NA	NA	NA	NA
WP_002452096.1\|952585_953716_-\|tRNA	tRNA epoxyqueuosine(34) reductase QueG	NA	NA	NA	NA
WP_002452095.1\|953973_954696_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.5e-35	41.8
WP_002452094.1\|954688_956149_-	ABC transporter substrate-binding protein/permease	NA	NA	NA	NA
WP_002452093.1\|956266_957331_-	PTS transporter subunit IIC	NA	NA	NA	NA
WP_002452366.1\|965861_966314_-	peroxide-responsive transcriptional repressor PerR	NA	NA	NA	NA
WP_002452365.1\|966408_967359_-	2-hydroxyacid dehydrogenase	NA	NA	NA	NA
WP_002452364.1\|967364_967820_-	thioredoxin-dependent thiol peroxidase	NA	NA	NA	NA
WP_002452363.1\|967899_969189_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA
WP_002452362.1\|969576_970671_+	aromatic acid exporter family protein	NA	NA	NA	NA
WP_002452361.1\|970759_972496_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	2.9e-53	30.4
WP_002452360.1\|972793_973336_-	DUF402 domain-containing protein	NA	NA	NA	NA
WP_002452359.1\|973449_974493_-	A/G-specific adenine glycosylase	NA	NA	NA	NA
973665:973682	attL	NA	NA	NA	NA
WP_002452358.1\|974645_975623_+	metal-dependent hydrolase	NA	NA	NA	NA
WP_002452357.1\|975678_976539_-	hypothetical protein	NA	NA	NA	NA
WP_002452356.1\|976547_978056_-	ABC transporter ATP-binding protein	NA	NA	NA	NA
WP_015364863.1\|978070_978385_-	YfhH family protein	NA	NA	NA	NA
WP_002452354.1\|978362_979181_-	recombination regulator RecX	NA	NA	NA	NA
WP_002452353.1\|979350_980160_-	monofunctional peptidoglycan glycosyltransferase SgtB	NA	NA	NA	NA
WP_002452352.1\|980397_980916_-	type 1 glutamine amidotransferase	NA	NA	NA	NA
WP_001830395.1\|981041_981203_-	hypothetical protein	NA	NA	NA	NA
WP_100066988.1\|982165_982276_-	hypothetical protein	W5R8J7	Staphylococcus_phage	3.3e-08	86.1
WP_002452351.1\|983260_984694_-	SH3 domain-containing protein	A0A2H4J2Z6	uncultured_Caudovirales_phage	1.4e-287	98.5
WP_002452350.1\|984693_985149_-\|holin	phage holin	A0A2H4J2Z1	uncultured_Caudovirales_phage	9.7e-78	100.0
WP_002452349.1\|985196_985643_-	hypothetical protein	A0A2H4JAH6	uncultured_Caudovirales_phage	9.9e-75	99.3
WP_002452348.1\|985652_985976_-	hypothetical protein	A0A2H4J862	uncultured_Caudovirales_phage	4.2e-51	100.0
WP_002452347.1\|986039_986330_-	hypothetical protein	A0A2H4JB13	uncultured_Caudovirales_phage	7.6e-44	97.9
WP_002452346.1\|986373_986520_-	hypothetical protein	A0A2H4J4L2	uncultured_Caudovirales_phage	8.9e-17	100.0
WP_002452345.1\|986509_990430_-	hypothetical protein	A0A2H4J300	uncultured_Caudovirales_phage	0.0e+00	99.0
WP_002452344.1\|990442_991933_-\|tail	phage tail family protein	A0A2H4J1X6	uncultured_Caudovirales_phage	2.7e-270	90.9
WP_002452343.1\|991936_997771_-	peptidoglycan DD-metalloendopeptidase family protein	A0A2H4JAF5	uncultured_Caudovirales_phage	0.0e+00	83.1
WP_002452342.1\|997811_997970_-	hypothetical protein	A0A2H4J1W1	uncultured_Caudovirales_phage	5.8e-22	100.0
WP_002452341.1\|998047_998365_-	hypothetical protein	A0A2H4J3G5	uncultured_Caudovirales_phage	1.2e-53	99.0
WP_002452340.1\|998464_999157_-\|tail	tail protein	A0A2H4J9R4	uncultured_Caudovirales_phage	4.4e-114	99.5
WP_002452339.1\|999221_999626_-	hypothetical protein	A0A2H4J6T2	uncultured_Caudovirales_phage	2.2e-73	99.3
WP_002452338.1\|999626_1000022_-	hypothetical protein	A0A2H4JA97	uncultured_Caudovirales_phage	1.8e-64	87.8
WP_002452337.1\|1000018_1000369_-	hypothetical protein	A0A2H4J225	uncultured_Caudovirales_phage	7.5e-62	98.3
WP_002452336.1\|1000352_1000640_-	hypothetical protein	A0A2H4JAM0	uncultured_Caudovirales_phage	1.1e-47	98.9
WP_002452335.1\|1000645_1000816_-	hypothetical protein	A0A2H4JAK4	uncultured_Caudovirales_phage	4.3e-23	100.0
WP_002452334.1\|1000828_1002049_-\|capsid	phage major capsid protein	A0A2H4J1Z5	uncultured_Caudovirales_phage	3.5e-223	98.3
WP_002452333.1\|1002066_1002843_-\|protease	Clp protease ClpP	A0A2H4J9Z1	uncultured_Caudovirales_phage	6.2e-125	89.9
WP_100066995.1\|1002832_1003978_-\|portal	phage portal protein	A0A2H4J9T2	uncultured_Caudovirales_phage	6.4e-211	97.6
WP_002452331.1\|1004010_1005663_-\|terminase	terminase large subunit	A0A2H4J6U3	uncultured_Caudovirales_phage	0.0e+00	99.1
WP_002452330.1\|1005659_1006025_-	hypothetical protein	A0A2H4J959	uncultured_Caudovirales_phage	1.5e-60	99.2
WP_002452329.1\|1006165_1006477_-	HNH endonuclease	A0A2H4J5U5	uncultured_Caudovirales_phage	2.2e-52	91.3
WP_002452328.1\|1006620_1007034_-	hypothetical protein	A0A2H4J3L6	uncultured_Caudovirales_phage	1.5e-72	100.0
WP_049416307.1\|1007046_1007268_-	helix-turn-helix transcriptional regulator	A0A2H4JCF9	uncultured_Caudovirales_phage	2.3e-24	83.3
WP_002452327.1\|1007281_1007434_-	DUF1514 family protein	A0A2H4J823	uncultured_Caudovirales_phage	2.6e-19	96.0
WP_002452326.1\|1007433_1007601_-	hypothetical protein	A0A2H4J9B5	uncultured_Caudovirales_phage	7.3e-23	98.2
WP_100066994.1\|1007600_1007744_-	DUF1381 domain-containing protein	A0A2H4J497	uncultured_Caudovirales_phage	6.4e-12	80.0
WP_037552635.1\|1007748_1007982_-	hypothetical protein	NA	NA	NA	NA
WP_100066993.1\|1008018_1008405_-	hypothetical protein	A0A1W6JPV4	Staphylococcus_phage	1.6e-41	87.9
WP_100066987.1\|1008991_1009228_-	hypothetical protein	A0A2H4J3K8	uncultured_Caudovirales_phage	1.2e-31	82.1
WP_002452322.1\|1009217_1009580_-	thermonuclease family protein	A0A1W6JPT5	Staphylococcus_phage	2.2e-64	100.0
WP_002452321.1\|1009619_1009862_-	DUF3310 domain-containing protein	A0A2H4J205	uncultured_Caudovirales_phage	9.9e-37	96.2
WP_002452320.1\|1009867_1010050_-	hypothetical protein	A0A1W6JPR6	Staphylococcus_phage	6.3e-28	96.7
WP_002452319.1\|1010054_1010465_-	hypothetical protein	A0A2H4JAE5	uncultured_Caudovirales_phage	1.3e-60	89.0
WP_002452318.1\|1010465_1010657_-	hypothetical protein	A0A2H4J834	uncultured_Caudovirales_phage	4.7e-26	98.4
WP_002452317.1\|1010657_1010969_-	VRR-NUC domain-containing protein	A0A2H4JAY8	uncultured_Caudovirales_phage	5.9e-50	95.1
WP_002452316.1\|1011242_1013552_-	primase	A0A2H4J4H0	uncultured_Caudovirales_phage	0.0e+00	98.8
WP_002452315.1\|1013529_1014078_-	DUF669 domain-containing protein	A0A2H4J2X4	uncultured_Caudovirales_phage	6.4e-100	98.9
WP_037552633.1\|1014092_1015502_-	DEAD/DEAH box helicase	A0A2H4JBR2	uncultured_Caudovirales_phage	1.2e-270	97.7
WP_002452313.1\|1015488_1016190_-	AAA family ATPase	A0A2H4J2Z5	uncultured_Caudovirales_phage	2.8e-132	99.1
WP_002452312.1\|1016179_1016410_-	DUF2483 family protein	A0A2H4J633	uncultured_Caudovirales_phage	5.1e-35	97.4
WP_002452311.1\|1016381_1016630_-	hypothetical protein	A0A1W6JPR3	Staphylococcus_phage	2.9e-36	97.3
WP_002452310.1\|1016707_1016878_-	DUF1270 family protein	A0A2H4J2X5	uncultured_Caudovirales_phage	3.4e-20	98.2
WP_037552631.1\|1016874_1017090_-	MarR family transcriptional regulator	A0A2H4J149	uncultured_Caudovirales_phage	4.4e-20	73.2
WP_002452309.1\|1017261_1017687_-	hypothetical protein	A0A2H4J7P2	uncultured_Caudovirales_phage	1.2e-29	97.3
WP_100066991.1\|1017742_1018045_+	hypothetical protein	A0A2H4JA21	uncultured_Caudovirales_phage	2.3e-35	93.8
WP_002452307.1\|1018178_1018340_-	hypothetical protein	NA	NA	NA	NA
WP_002452306.1\|1018353_1018599_-	DUF2829 domain-containing protein	A0A2H4JBS5	uncultured_Caudovirales_phage	1.5e-40	100.0
WP_002452305.1\|1018638_1018851_-	helix-turn-helix transcriptional regulator	A0A2H4J3K6	uncultured_Caudovirales_phage	7.1e-31	94.3
WP_002452304.1\|1019004_1019319_+	helix-turn-helix transcriptional regulator	A0A2H4JCJ2	uncultured_Caudovirales_phage	8.0e-39	77.7
WP_002452303.1\|1019334_1019799_+	ImmA/IrrE family metallo-endopeptidase	A0A2H4J2Y7	uncultured_Caudovirales_phage	2.0e-70	83.1
WP_002452302.1\|1019811_1020339_+	hypothetical protein	A0A2H4J2Y4	uncultured_Caudovirales_phage	6.1e-15	86.9
WP_002452300.1\|1021325_1021763_+	DUF4231 domain-containing protein	A0A1J0MFR0	Staphylococcus_phage	2.7e-69	93.1
WP_002452299.1\|1021756_1022164_+	TIR domain-containing protein	A0A2H4J496	uncultured_Caudovirales_phage	8.2e-68	89.6
WP_002452298.1\|1022160_1022358_-	hypothetical protein	A0A2H4JBN9	uncultured_Caudovirales_phage	2.3e-28	93.8
WP_002452297.1\|1022471_1023518_+\|integrase	site-specific integrase	Q38045	Staphylococcus_phage	2.3e-170	84.2
1027287:1027304	attR	NA	NA	NA	NA

DBSCAN-SWA_6

1950402 : 2015506

Staphylococcus_phage(41.67%)

terminase,protease,integrase,transposase

attL 2004775:2004804|attR 2018710:2018739

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002450451.1\|1950402_1950885_+\|transposase	IS200/IS605 family transposase	A0A1P8BMC0	Lactococcus_phage	3.7e-19	36.1
WP_002451618.1\|1951725_1952265_-	hypothetical protein	NA	NA	NA	NA
WP_002451617.1\|1952773_1953721_+	hypothetical protein	NA	NA	NA	NA
WP_002451615.1\|1954330_1954828_+	hypothetical protein	NA	NA	NA	NA
WP_002451612.1\|1956253_1957054_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_002451611.1\|1957388_1957616_+	hypothetical protein	NA	NA	NA	NA
WP_002451610.1\|1957884_1958487_+	short chain dehydrogenase	NA	NA	NA	NA
WP_002451609.1\|1958635_1958971_-	hypothetical protein	NA	NA	NA	NA
WP_002451608.1\|1959156_1959864_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_002451607.1\|1959895_1960108_-	hypothetical protein	NA	NA	NA	NA
WP_002451606.1\|1960322_1962389_+	YSIRK-type signal peptide-containing protein	NA	NA	NA	NA
WP_002451605.1\|1962434_1962623_-	hypothetical protein	NA	NA	NA	NA
WP_002451604.1\|1962660_1964541_-	ABC transporter permease	NA	NA	NA	NA
WP_002451603.1\|1964530_1965289_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.8e-34	36.2
WP_002451602.1\|1965557_1965938_+	hypothetical protein	A0A141HRS8	Bacillus_phage	9.8e-07	38.0
WP_002451601.1\|1965952_1966591_+	hypothetical protein	NA	NA	NA	NA
WP_002451600.1\|1966618_1967197_+	signal peptidase I	NA	NA	NA	NA
WP_002451599.1\|1967427_1967970_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_002451598.1\|1968082_1968805_-	DUF3169 family protein	NA	NA	NA	NA
WP_002451597.1\|1968801_1969005_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_002451596.1\|1969134_1969662_+	DUF3267 domain-containing protein	NA	NA	NA	NA
WP_002451595.1\|1969687_1969867_+	hypothetical protein	NA	NA	NA	NA
WP_002451594.1\|1969871_1970393_+	MepB family protein	NA	NA	NA	NA
WP_037552370.1\|1970595_1971705_+	NAD(P)-binding domain-containing protein	NA	NA	NA	NA
WP_002451592.1\|1971698_1973039_+	ferrous iron transporter B	NA	NA	NA	NA
WP_002451591.1\|1973053_1973983_+	GTP-binding protein	NA	NA	NA	NA
WP_002451590.1\|1974064_1975789_-	glycoside hydrolase family 3 protein	NA	NA	NA	NA
WP_037552366.1\|1975804_1976641_-	HAD hydrolase-like protein	NA	NA	NA	NA
WP_002451588.1\|1976692_1977916_+	AraC family transcriptional regulator	NA	NA	NA	NA
WP_002451587.1\|1978323_1978965_+	bifunctional 2-keto-4-hydroxyglutarate aldolase/2-keto-3-deoxy-6-phosphogluconate aldolase	NA	NA	NA	NA
WP_002451586.1\|1978969_1979980_+	sugar kinase	NA	NA	NA	NA
WP_002451585.1\|1979995_1981399_+	MFS transporter	NA	NA	NA	NA
WP_002451584.1\|1981414_1982827_+	glucuronate isomerase	NA	NA	NA	NA
WP_002451583.1\|1982830_1983877_+	mannonate dehydratase	NA	NA	NA	NA
WP_002451582.1\|1983898_1984741_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_002451581.1\|1984759_1986565_+	beta-glucuronidase	B9U1V4	Vaccinia_virus	3.8e-149	47.5
WP_002451580.1\|1986893_1988078_+	acetyl-CoA C-acetyltransferase	NA	NA	NA	NA
WP_172852412.1\|1988442_1988925_-\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	9.2e-34	47.4
WP_172852388.1\|1988924_1989254_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	8.5e-15	39.4
WP_172852414.1\|1989436_1989850_-\|transposase	transposase	NA	NA	NA	NA
WP_002451533.1\|1990620_1990827_+	hypothetical protein	NA	NA	NA	NA
WP_002451532.1\|1991077_1991821_-	cyclase family protein	NA	NA	NA	NA
WP_002451531.1\|1991842_1994089_-	5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase	NA	NA	NA	NA
WP_002451530.1\|1994085_1995924_-	bifunctional homocysteine S-methyltransferase/methylenetetrahydrofolate reductase	NA	NA	NA	NA
WP_002451529.1\|1995877_1997053_-	PLP-dependent transferase	A0A0B5JD48	Pandoravirus	2.3e-14	28.5
WP_002451528.1\|1997049_1998153_-	PLP-dependent transferase	A0A0B5JD48	Pandoravirus	1.3e-11	27.0
WP_002451527.1\|1998856_1999696_+	ParB/RepB/Spo0J family partition protein	A0A1C9EHY8	Gordonia_phage	7.2e-10	30.8
WP_002451526.1\|1999843_2000722_+	mechanosensitive ion channel family protein	NA	NA	NA	NA
WP_002451525.1\|2000742_2000946_+	DUF951 domain-containing protein	NA	NA	NA	NA
WP_002451524.1\|2000957_2002055_+	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_002451523.1\|2002220_2002412_-	hypothetical protein	U3PCX8	Staphylococcus_phage	2.2e-23	81.7
WP_002451522.1\|2002473_2003295_-	lysozyme	A0A291I9H5	Lactobacillus_phage	1.8e-37	46.4
WP_002451521.1\|2003670_2003967_+	30S ribosomal protein S6	NA	NA	NA	NA
WP_002451520.1\|2003988_2004504_+	single-stranded DNA-binding protein	A0A2H4JCF2	uncultured_Caudovirales_phage	2.7e-60	84.8
WP_002451519.1\|2004546_2004789_+	30S ribosomal protein S18	NA	NA	NA	NA
2004775:2004804	attL	NA	NA	NA	NA
WP_002451518.1\|2005015_2006239_-\|integrase	site-specific integrase	Q4ZE80	Staphylococcus_phage	3.4e-178	79.3
WP_002451517.1\|2006262_2007024_-	helix-turn-helix transcriptional regulator	Q8SDV8	Staphylococcus_phage	5.7e-06	41.0
WP_002451516.1\|2007228_2007393_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_002451515.1\|2007393_2007666_+	hypothetical protein	Q4ZE77	Staphylococcus_phage	1.7e-16	40.0
WP_002451514.1\|2007678_2007834_+	hypothetical protein	NA	NA	NA	NA
WP_002451513.1\|2007835_2008048_+	hypothetical protein	Q4ZE76	Staphylococcus_phage	2.9e-16	62.7
WP_002451510.1\|2008410_2008749_+	hypothetical protein	A0A2H4JBC6	uncultured_Caudovirales_phage	4.3e-14	39.3
WP_002451509.1\|2008837_2009710_+	primase C-terminal domain-containing protein	A0A2H4JEH3	uncultured_Caudovirales_phage	2.7e-116	68.3
WP_002451508.1\|2009724_2011434_+	DUF927 domain-containing protein	Q4ZE73	Staphylococcus_phage	3.7e-279	84.2
WP_002451507.1\|2011763_2012141_+	hypothetical protein	Q4ZE71	Staphylococcus_phage	2.3e-48	74.6
WP_002451506.1\|2012142_2012784_+	hypothetical protein	Q4ZE67	Staphylococcus_phage	2.0e-89	74.6
WP_002451505.1\|2013064_2013409_+	hypothetical protein	A0A1W6JQF3	Staphylococcus_phage	8.5e-34	64.0
WP_002451504.1\|2013422_2014226_+	hypothetical protein	A0A2H4JD56	uncultured_Caudovirales_phage	2.4e-39	38.8
WP_002451503.1\|2014198_2014432_+	hypothetical protein	NA	NA	NA	NA
WP_002451502.1\|2014443_2014965_+	hypothetical protein	NA	NA	NA	NA
WP_002451501.1\|2015026_2015506_+\|terminase	terminase small subunit	Q4ZE85	Staphylococcus_phage	3.1e-66	81.7
2018710:2018739	attR	NA	NA	NA	NA

DBSCAN-SWA_7

2353836 : 2360846

Staphylococcus_phage(14.29%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002450965.1\|2353836_2354679_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	8.2e-54	42.5
WP_002450964.1\|2354906_2356013_+	glycosyltransferase family 2 protein	A8CG95	Salmonella_phage	3.1e-61	41.0
WP_002450963.1\|2356285_2356888_-	hypothetical protein	NA	NA	NA	NA
WP_002450962.1\|2356990_2357704_-	7-carboxy-7-deazaguanine synthase QueE	E7DN68	Pneumococcus_phage	8.5e-52	42.3
WP_002450961.1\|2357703_2358123_-	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	1.7e-07	26.1
WP_172852465.1\|2358124_2358793_-	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	2.8e-65	54.7
WP_002450959.1\|2359120_2359714_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	2.0e-38	42.5
WP_002450958.1\|2359697_2360846_+	aminodeoxychorismate synthase component I	S4VNU7	Pandoravirus	3.5e-23	39.1

DBSCAN-SWA_8

2373602 : 2387075

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002450947.1\|2373602_2374658_+	histidinol-phosphate transaminase	A0A0H3TLT9	Faustovirus	5.7e-20	27.4
WP_002450946.1\|2374745_2375282_+	5'-3'-deoxyribonucleotidase	A0A0A0PKY7	Bacillus_phage	4.9e-28	37.8
WP_002450945.1\|2375364_2376294_-	diacylglycerol kinase family lipid kinase	NA	NA	NA	NA
WP_002450944.1\|2376443_2377949_-	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	5.4e-56	31.5
WP_002450943.1\|2378284_2378785_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	1.7e-51	65.6
WP_002450942.1\|2378808_2379678_-	DMT family transporter	NA	NA	NA	NA
WP_002450941.1\|2380476_2380875_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	7.0e-56	78.0
WP_002450940.1\|2380837_2382943_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	93.7
WP_002450939.1\|2383186_2384161_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	1.1e-179	96.3
WP_002450938.1\|2384387_2385356_+	ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	1.5e-144	82.0
WP_002450937.1\|2385345_2386305_+	iron chelate uptake ABC transporter family permease subunit	A0A2H4J116	uncultured_Caudovirales_phage	8.0e-05	54.0
WP_002450936.1\|2386301_2387075_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	6.2e-16	32.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP054016

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 7132

Staphylococcus_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002451755.1\|2730_4287_+	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	3.9e-235	80.3
WP_002451754.1\|4279_5422_+	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	4.8e-41	33.0
WP_002451753.1\|5625_6075_-	hypothetical protein	NA	NA	NA	NA
WP_172852349.1\|6457_7132_-\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	8.4e-126	98.2

DBSCAN-SWA_2

14421 : 17951

Staphylococcus_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_172852351.1\|14421_15096_+\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	2.2e-126	98.7
WP_172852353.1\|15164_15551_+\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	2.8e-25	46.8
WP_002451447.1\|15689_17951_-	excinuclease ABC subunit UvrA	A0A1B1IVR3	uncultured_Mediterranean_phage	4.2e-113	31.7

DBSCAN-SWA_3

28260 : 28854

Enterobacteria_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000690638.1\|28260_28854_+	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	1.5e-41	51.1

DBSCAN-SWA_4

37336 : 41132

Staphylococcus_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_172852355.1\|37336_38011_+\|transposase	IS6 family transposase	A0A0N9RU54	Staphylococcus_phage	2.2e-126	98.7
WP_002451760.1\|38425_38680_-	hypothetical protein	NA	NA	NA	NA
WP_002451759.1\|39844_40189_-	protein rep	NA	NA	NA	NA
WP_002451758.1\|40157_41132_-	replication initiator protein A	A0A286QNA4	Streptococcus_phage	7.6e-19	47.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP054017

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP054016

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection