CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP053940	Bifidobacterium breve strain JTL chromosome, complete genome	6 crisprs	cas8c,cas7,cas4,cas1,cas2,WYL,cas3,DEDDh	0	17	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP053940_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053940_1

108239-108543

Orphan

Consensus_repeat	Method
TCGGAACGACGGCGACGCGGACG	CRISPRCasFinder

5 spacers

The CRISPR arrays of NZ_CP053940_1

>merge|NZ_CP053940|1|108239-108543|CRISPRCasFinder
TCGGAGCCACGGCCACGGCCACCACGAGAACCACGGCGGTCATCACGATCGCCACGGTCATCGGAACGACGGCGACGCGGACGATCCTCGTAGTCATCCTCGAAATCGGCGGAGCGACGGCGACGCGGACGATCATCATCGCGGGAATCGCGGTCGTCACGGTCGAAGTCGCGATCATCGGAACGACGGCGACGCGGACGATCCTCGTAGTCATCCTCGAAATCGTCGGAGCGACGGCGACGCGGACGGTCGTCGCGATCGTCGAAGTCGCGATCGTCACGGTCGGAGCGGCGGCCACGGCCACC

>NZ_CP053940|1|1|108239-108543|CRISPRCasFinder
TCGGAGCCACGGCCACGGCCACC	ACGAGAACCACGGCGGTCATCACGATCGCCACGGTCA
TCGGAACGACGGCGACGCGGACG	ATCCTCGTAGTCATCCTCGAAATCG
GCGGAGCGACGGCGACGCGGACG	ATCATCATCGCGGGAATCGCGGTCGTCACGGTCGAAGTCGCGATCA
TCGGAACGACGGCGACGCGGACG	ATCCTCGTAGTCATCCTCGAAATCG
TCGGAGCGACGGCGACGCGGACG	GTCGTCGCGATCGTCGAAGTCGCGATCGTCACGG
TCGGAGCGGCGGCCACGGCCACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053940.1\|WP_003828224.1\|115808_119525_-\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|238119
NZ_CP053940.1\|WP_015438405.1\|121234_121933_+\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|223551
NZ_CP053940.1\|WP_014483456.1\|106973_107684_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213222
NZ_CP053940.1\|WP_025341556.1\|102554_104810_-\|DUF2207-domain-containing-protein	unknown	unknown	gnl\|CDD\|378333
NZ_CP053940.1\|WP_014483458.1\|104875_105463_-\|LemA-family-protein	unknown	unknown	gnl\|CDD\|377192
NZ_CP053940.1\|WP_021648718.1\|100266_100437_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053940.1\|WP_003828226.1\|113271_113946_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053940.1\|WP_014483444.1\|125551_126217_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP053940.1\|WP_025262755.1\|99248_100112_-\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381314
NZ_CP053940.1\|WP_003828218.1\|123357_123912_+\|methylated-DNA--[protein]-cysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|223427
NZ_CP053940.1\|WP_003828240.1\|97236_97851_+\|ribosome-maturation-factor-RimM	unknown	unknown	gnl\|CDD\|234650
NZ_CP053940.1\|WP_003828225.1\|114053_115601_-\|isopeptide-forming-domain-containing-fimbrial-protein	unknown	unknown	gnl\|CDD\|380024
NZ_CP053940.1\|WP_003828241.1\|96980_97214_+\|RNA-binding-protein	unknown	unknown	gnl\|CDD\|179479
NZ_CP053940.1\|WP_014483447.1\|122618_123068_-\|holo-ACP-synthase	unknown	unknown	gnl\|CDD\|234610
NZ_CP053940.1\|WP_019727809.1\|102312_102555_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378333
NZ_CP053940.1\|WP_003828228.1\|111504_112191_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053940.1\|WP_003828229.1\|111105_111375_-\|30S-ribosomal-protein-S15	unknown	unknown	gnl\|CDD\|180170
NZ_CP053940.1\|WP_003828217.1\|124142_125480_+\|DUF2974-domain-containing-protein	unknown	unknown	gnl\|CDD\|371412
NZ_CP053940.1\|WP_025262750.1\|105924_106836_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380149
NZ_CP053940.1\|WP_003828239.1\|97925_98981_-\|nucleoside-hydrolase	unknown	unknown	gnl\|CDD\|239116

Protein	Function_ID	Function_description	E-value
NZ_CP053940.1\|WP_015438405.1\|121234_121933_+\|cation:proton-antiporter	gnl\|CDD\|223551	COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism].	8.72938e-09
NZ_CP053940.1\|WP_014483456.1\|106973_107684_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	5.23649e-80
NZ_CP053940.1\|WP_025341556.1\|102554_104810_-\|DUF2207-domain-containing-protein	gnl\|CDD\|378333	pfam09972, DUF2207, Predicted membrane protein (DUF2207). This domain, found in various hypothetical bacterial proteins, has no known function.	3.57607e-81
NZ_CP053940.1\|WP_014483458.1\|104875_105463_-\|LemA-family-protein	gnl\|CDD\|377192	pfam04011, LemA, LemA family. The members of this family are related to the LemA protein. LemA contains an amino terminal predicted transmembrane helix. It has been predicted that the small amino terminus is extracellular. The exact molecular function of this protein is uncertain.	1.23519e-78
NZ_CP053940.1\|WP_014483444.1\|125551_126217_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.1451e-06
NZ_CP053940.1\|WP_025262755.1\|99248_100112_-\|aldo/keto-reductase	gnl\|CDD\|381314	cd19088, AKR_AKR13B1, AKR13B family of aldo-keto reductase (AKR). Xylella fastidiosa phenylacetaldehyde dehydrogenase is a founding member of aldo-keto reductase family 13 member B1 (AKR13B1). phenylacetaldehyde dehydrogenase (EC 1.2.1.39) catalyzes the NAD+-dependent oxidation of phenylactealdehyde to phenylacetic acid.	9.92055e-89
NZ_CP053940.1\|WP_003828218.1\|123357_123912_+\|methylated-DNA--[protein]-cysteine-S-methyltransferase	gnl\|CDD\|223427	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair].	2.0703e-44
NZ_CP053940.1\|WP_003828225.1\|114053_115601_-\|isopeptide-forming-domain-containing-fimbrial-protein	gnl\|CDD\|380024	pfam17802, SpaA, Prealbumin-like fold domain. This entry contains a prealbumin-like domain from a wide variety of bacterial surface proteins. This entry corresponds to domain 1 and domain 3 of SpaA from Corynebacterium diphtheriae. Some members of this family contain an isopeptide bond.	1.07172e-09
NZ_CP053940.1\|WP_003828224.1\|115808_119525_-\|VWA-domain-containing-protein	gnl\|CDD\|238119	cd00198, vWFA, Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.	1.43563e-09
NZ_CP053940.1\|WP_003828241.1\|96980_97214_+\|RNA-binding-protein	gnl\|CDD\|179479	PRK02821, PRK02821, RNA-binding protein.	8.71349e-36
NZ_CP053940.1\|WP_003828240.1\|97236_97851_+\|ribosome-maturation-factor-RimM	gnl\|CDD\|234650	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional.	2.4629e-48
NZ_CP053940.1\|WP_014483447.1\|122618_123068_-\|holo-ACP-synthase	gnl\|CDD\|234610	PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional.	1.63322e-24
NZ_CP053940.1\|WP_019727809.1\|102312_102555_-\|hypothetical-protein	gnl\|CDD\|378333	pfam09972, DUF2207, Predicted membrane protein (DUF2207). This domain, found in various hypothetical bacterial proteins, has no known function.	0.00277852
NZ_CP053940.1\|WP_003828229.1\|111105_111375_-\|30S-ribosomal-protein-S15	gnl\|CDD\|180170	PRK05626, rpsO, 30S ribosomal protein S15; Reviewed.	1.16189e-53
NZ_CP053940.1\|WP_003828217.1\|124142_125480_+\|DUF2974-domain-containing-protein	gnl\|CDD\|371412	pfam11187, DUF2974, Protein of unknown function (DUF2974). This bacterial family of proteins has no known function.	6.4705e-116
NZ_CP053940.1\|WP_025262750.1\|105924_106836_+\|hypothetical-protein	gnl\|CDD\|380149	NF012181, MSCRAMM_SdrD, MSCRAMM family adhesin SdrD. Features of this protein family include a YSIRK-type signal peptide at the N-terminus and a variable-length C-terminal region of Ser-Asp (SD) repeats followed by an LPXTG motif for surface immobilization by sortase.	3.08492e-05
NZ_CP053940.1\|WP_003828239.1\|97925_98981_-\|nucleoside-hydrolase	gnl\|CDD\|239116	cd02650, nuc_hydro_CaPnhB, NH_hydro_CaPnhB: A subgroup of nucleoside hydrolases similar to Corynebacterium ammoniagenes Purine/pyrimidine nucleoside hydrolase (pnhB). Nucleoside hydrolases cleave the N-glycosidic bond in nucleosides generating ribose and the respective base. These enzymes vary in their substrate specificity. .	2.56495e-132

>NZ_CP053940.1|WP_014483456.1|106973_107684_+|ATP-binding-cassette-domain-containing-protein
MNTAIGTNTEAIVMPTAEPALQLEHVSYSYTKGGKRVLIDENYDFRAGSVVSITGPSGAGKTTLLSLLSGLTIPTKGRVLHNGEDLAKADRYRFRSHDIGVIFQSFNLLPALTVAENIILSMDASGKTFDRPKKQIAAELIEKVRLQPEYLNERILHLSGGGQQRVAIARALSYDPQIILADEPTGNLDLATQDDIMGIFKDLAHAEGKCVIIVTHSPEVAAQSDEVFQLAPLRER
>NZ_CP053940.1|WP_025262750.1|105924_106836_+|hypothetical-protein
MFVLNNAWKTVIRNKGRNILIVLIVAIIAAAATIGLAIRNAADNARETGLVNTSVTATISVDRSKLMEQARESQSSDSSSGSSDSSDSSDSSDSDSAPDFDAMRGALDSSNLTLADYQKYAKASSVSVSSCYSESTGVSGTDSFQPVETSTANAANSSDSSSDSGSSNQQGQGGPGGDMGGGPGGSGASGGNTSTGNGDSSSNSSGDSGSSSVDGSDSYNSESGSSGNDSSSGNGDSQGGQPGGMRGGMSQAVDYVSEINATVNLAVVGQLILIGLGLTLISALVGIVFVMRYEPLQILADRS
>NZ_CP053940.1|WP_014483458.1|104875_105463_-|LemA-family-protein
MSAGLIITIVVVVVVVVIVALIAWAVGAYNNLVTLKNRVKNGWAQIDVQLKQRADLIPNLVNTVKGYATHESEVFTQVTAARAGVVAAANDPNATTAQRAAAENQLSRALVNLQATAEAYPQLQANQNFMDLQAQLKDLENKIAYARQFYNDVVLKLNTAIETVPTNIIAGLFHFEQAQYFEADDASRQAPQVKF
>NZ_CP053940.1|WP_025341556.1|102554_104810_-|DUF2207-domain-containing-protein
MKKRFIRAGVISALITFAVACFAALMMVIMPAGDSADLSYRTLDYDVTATADGNLKVTQRIDVKLRDRSDDDGDRPWKQLFQQYSLAPGNLTDITDISVRNVTDGIDYAQQTEPKLPSAVSSNEAWNSDYANHWYIADVSASSDNPQPYTPGMDGIQTGPSSKSAKTVEIGWNIPVTTEANSMKFEVSFTMHNVATKWQDVASFQWEPFGKKNQVPIGTVTGTVHFPEDITGKTSWAWLHTERTSETKRESDGSYTFTAYNMRTGDYLDVVAAFDSSKAGDMARTQPGDHLNDLKTSEYNQQQRWLDRQRLAARIRLIGWIATIVIGLALCVWGVWAAIASNRRAQYHGDIEYWRDQPGISPASAARLITLVDASATGSSSDRELTATMLSLAVKKAIAIYPGPADMYRGIDMSQATPVGLSQMIAADPGKMNAARNTSTIVILPASLDAASNIEQLGLSQSEEALLALLITISQRVGCPVFDLNQMKNVCKDWASGYLELNKFTDSCAAEYSPLTSTASSQWAVAGVLAVVLGLGALIVNGTTGFMVAGMITGSPLLLVGLFCLLGGTSTALTEPGHEMAGRCLGLKRYMQDFSNFADRGAADIAMWDWYMVYAAAFGISERVMKELAKAYPQVNDPAWLDANAAGTLFYWNYRPYGWYGGRYYGDSATADQGSLGAAGPVPAYGGTSFAGGFSDLGSQLSAGFADISSTIQAAAPSSDSGGDFGSFGSGGGSGFGGSFGGSGGGSFGGR
>NZ_CP053940.1|WP_019727809.1|102312_102555_-|hypothetical-protein
MRHRAIRSIIATLIAAATITAILIVTLLIFNWFTADHPKLSYRSLDYEVAVQPNGDLKVTQHIDMKLDSRGKNRPWKQLY
>NZ_CP053940.1|WP_021648718.1|100266_100437_-|hypothetical-protein
MGGNDRDNRPRSDRQYREGLMTGLLIALANQVGQGWSTAIIIATPVLLGLSLRRGR
>NZ_CP053940.1|WP_025262755.1|99248_100112_-|aldo/keto-reductase
MTLFRQLGPFSTTAIGHGEMPLTIENNRGHEVGIETLHASLDAGCRHIDTAWAYYCSGGEEQTGEKLVREALETWKGPKDEVLVATKVGHFRNFTDDRPTWDVDGRPENLIRRGKESALALGVDTIDLLYFHRPDPKVPYSESVEAIKQLVDEGVAREAGISNASIEQIDIARGILGDKLVAVQNQYSPIHLHTQDTLDYCAKVGLAFVCWSPLGGYRHPYDETKFDPFREVAAAHGVSYQQVVLAWELAKGDHMFVIPGAHHPETILDSLKADQLELTPEELAKLG
>NZ_CP053940.1|WP_003828239.1|97925_98981_-|nucleoside-hydrolase
MRKKLILDLDTGIDDALAIAYALGSAGDADLIGITATYGNVAVPLAARNALAVLHAFGRDDIPVYPGIDHPIAPAKLPLMRGTTPDERAEAYRRWQEGGEDGWQTDTPWSPSPGSVAVHHPNGIGGAVLPDSPRQPEAPGSAVDFIIAAARECGPDLTIVPTGAMTTMATVFRNAPDLKDSGINVTLMGGSLTLPGNVSPAAEANISQDPEAADYLFKCGARTTMIGLDVTHQTALTREKAHEWAALGTPAGDFLVTMTDYYIDFYVKNQPEIHGCGLHDPLAVAAALDPSLVTTFGFNLQVDLEGPFRGRTIGDRSRVQDPDKHTQVALGVNVPAFLDRFMQRVTAVVRG
>NZ_CP053940.1|WP_003828240.1|97236_97851_+|ribosome-maturation-factor-RimM
MAEQDMHDDPQQLELLRVARIGRAQGLKGEVTVRLYTDDPEWRFEPDSVLYSQDGETEYIVENSRTFKDRWILKLEGTDDRTAAEALNGVELYGEADDAEEMLEADEWYPKDLIGLEARLSEGNGLGLPAGQVVGKVVDVVDSPAQSLLKIRLVEPVVTGQDSKGEDVIEKTALVPFVEALVPEIDLDEQYLTLDPPGGLIPGL
>NZ_CP053940.1|WP_003828241.1|96980_97214_+|RNA-binding-protein
MLAQAVEHLIKNIVDFPDDVSVKSHENARGELLRVRVNPEDIGRVIGRSGRTANAIRTVVQALSDHKVRVDIMDVRR
>NZ_CP053940.1|WP_003828229.1|111105_111375_-|30S-ribosomal-protein-S15
MALTAEEKTQIINEYATHEGDTGSPEVQVALLSKRIADLTDHLKEHKHDHHSRRGMQLMIGDRRRLLDYLKRVDINRYRSLIERLGLRR
>NZ_CP053940.1|WP_003828228.1|111504_112191_-|hypothetical-protein
MEQEPNEQEPNEATEIVGSKVETVEVSKHPEASIPETDLSLADIERRRSHPVRWAVTILAVLAAIIAPYWFGRSFAVNNTEAVVAALGDVSAQGIALVGWTVVVIAYVGLVMAIVVSPSWPWLIVFVVGLAAEQFIAGLSMLNLHFWYSTYVVYGEQSNIANAANLGILAAAIGVAVYAVIFVGLLVVIKKTSPLNVLTKSWASFILYFVIEGVALFVVLFGGLLTAV
>NZ_CP053940.1|WP_003828226.1|113271_113946_-|hypothetical-protein
MEQPTKRYSTQDVWKSYWCGPTIFDRIGKDFDKSGYDLHWLRDALTSAYDVQESCRSSVNEKLRHPYTLSVLEKARLLCDAQDNRHASSIGIVDIAVLALSGFAVLASVISTYKDMNISQEIMPANLILLIGLIVLFAILMGEVIYLSRRDNRRDRLREALAILIAEDERTAKEKEQASDEELRQLIHNLLAISVQAASAVSDNSAAGGTADADAGNDDGDGDA
>NZ_CP053940.1|WP_003828225.1|114053_115601_-|isopeptide-forming-domain-containing-fimbrial-protein
MKLRKLFAGVAAAATLLGGMAFGATAANAADTASITLSGKTVKGTVYTAYKIGSYDTASAKVEKDKLASVGVTTDQAWKTDAENVLGSTVTNTPEYKGYGDPLAYVAGTTGYYTNTPATLPNASATMESFVQSLAGKLDGKTAVDPSQTVANDNDKVVFSGLDEGLYLIVSKTDTEPATDAGSPLAIVGTQVTVNGTAYTKLGANNQTLGKAVVKPSTPQKPSKSASDLNPYVGATITYTLEGTVPAKANSFKFVDTPSAGLTVKLDTLKVNVQGETDPLANTEYTVDPASGDFNTSAAKPSFTIALNNATKYQGKHIVVKYNALVNKKANVNGTNNDVRFDNSNQTTTTTITPQLNTVTFTKKGVDADTNALKGVVFQIVADTNNATPLPDGTATEATSGDKGVVTFSGLPNGTYTITEKTPADGYLTTALPSFTVTVENGKVTDVTPTGVGAGLVTFENGYANIVVKNVKKITQLPLTGAAGTMLFTVVAVLLAGVAATVFAKSRFTKRALDA
>NZ_CP053940.1|WP_003828224.1|115808_119525_-|VWA-domain-containing-protein
MKRIAEWFAAVGAAASKSGKRLVAVVAAVAMLGGVAGVSATAMADDQSAADTQQSTAQTETPANTDSKDAGTDTGNKDDSTKADATKSDDAASADTDAAASELTKQTAPAPTSTLNTQAAEATNGSCVYAGNVASGLNNVCWLDMTNFTAAQNQLQPMSVKLSDSLTMKFNIKYTGGRTLRSAWNKAAFGHYGYAGFPEGTKPALYQITGSYNTESTVELTDIKIVNADGSEITGNYSFMMADAESTNNDESISFTSSNEIEQVAQFPQQGDANYKNYAFGDQTFSADHKTVTGGGVRTGANPGIYLYKTKSPDTVSVTMGVHYGREIQAAIFGVLFSNAETTVTTNNASDTFAGKVESQTYGSEQTGGVTGSNSATSKVVNMLSDTDTSEQVKFTLSASENTNWNDYNVSFTCDGDCGEYDATPQIDTATGNRYVTVSVASEKSAHGKWVVTKKVKLDTPKIQKSISKDAVDSAATGQKDSYTLSLNVKGNTVSGTTTSGEKAKIDVAFVLDTSGSMNDKVGNSTRLKNMQNAITDNGGLSSVLFNSPDKIDAQVHVITFASGLGLDGTSVLSTKADLDEVVNGLTANGATHWEKGLERVSNISTRPGATKYVVFLTDGDPGNKGWKETNVYSCGVLGLQTCDDNDSARSVYNASVIAGKQLAKAGWNILNVGVDMPTTVYVNPDADSVSGSNYDLRNHSFSQTAGWVSPLEALTARENANKSATVKDQLIKAYPKTTSSELAQVFKDLGQIITTTTTKSYGKVSIVDTLSDYADPLFEYDKQSGEITSGVTVVTSDRSNVDAEVASKTYDVATRTVTVTFRDGFTLAKDVTYSVQFKVKPSDKAYETYASNKQSEKGGYTDTDNTVHQGETGTGTDSENKDGFYSNAEAHLAYSECTAVNNVAKDCVSKDNVTYQKPVLQVKTGKIQVTKKWDPTDSEPKDGSKVTVNIYKGDHADDGQKVDTLTLAKDGGWTGSLGNLAPGTYFVEETNVDGYTASYSQSQTVTITADDLWKAEPNMTKFDNVKTYDVTITNTLNRVDLDVNANVKVSKTVQGAAASKDFTFNLTCAKSNAACKDGVTWPKDSNGSLTATASKSDLQTIGTPADAKFPDGSTLQLKAPTGTTSAVYEFTVSEDQSGNPAGWKYDTDTVTVKVTVSKKTDGSGYKTNVEYVYADGDSDKTDNPKSADFTNVFVAVSSLPVTGGRSARDWLIYGGGLGLLALLAGAGYTVWRKRQLV
>NZ_CP053940.1|WP_015438405.1|121234_121933_+|cation:proton-antiporter
MTYDLVSLSIIMMIAVACPIITQLIPGKPMPQTVLLLVFGAIFGPFILDKIWVTKAVELLSELGLAFLFQLDVVLGAFAAGFILRFVTPNGNHTLNLKLEGVGYGFLIPVFFVVSGASIDVKAVVANPALLITFIIMLLLVRAVPIFVATTLDHRVNPLDPQDKLTVSLYFTTALPLIVAVTSLAVQGGTMHQTTASTLVAAGAVTVFLMPLLGGLTSKLMKGETRLIAPTA
>NZ_CP053940.1|WP_014483447.1|122618_123068_-|holo-ACP-synthase
MNTFGLGHDVVDVAAFAEQLGQPGSHMRALFSVREVRQAEDRARQKNDGEAVHLAAKWAGKEAFLKAWCDFLGSAPFPFTLDNFPWREIEILDDSRGVPHVSLSGDASPAFQTDYSGSIPDVRISLSHDGPVASAVVMIQSGNDSREIR
>NZ_CP053940.1|WP_003828218.1|123357_123912_+|methylated-DNA--[protein]-cysteine-S-methyltransferase
MAQRQLIRTTAETPIGRMMMASDGEALTELCLEDWWWVTKNQQHDNGTPDSELEVFRITRDWLQAYFADERPSLSQAPPMNPAGTPFQHEVWQLVAEIPYGMTASYGEIAAELSERRGGGRMAAQAVGGAVKHNPITIIVPCHRVVGSGRAFGGYGGRLDIKAELLEHEGVDITRFDLLDIRPV
>NZ_CP053940.1|WP_003828217.1|124142_125480_+|DUF2974-domain-containing-protein
MTGIIDYARTELRPFSELPFNEIDALIIATLIYEDVANICPTLMLDEQQQSGSFATRIRTFEPKHPLIWLKGLWHPAMESISLKEANQELHRSIDTSEDDKPHEAQMVSVIDPRLTHTLFEEAGNNPRFTGIQLGAVVEHVNRGEQTQFAAATFQLPDGRNRRNPTHKGTMVLSFRGTDDSLIGWKEDFNMAFQYPVPAQRAASAYLDTVARLWDGPIVLVGHSKGGNLAIYAAMNADAKVQNRIRHIYSLDGPGFPSEIVTSPAYRRIQPKVTKIVPSSSIVGMIFETPEPCRVVSSDSDGIMQHSAFTWLVDGDQFVTEPDLSSSSQLFNEELNHWVGALTPEQRERAVDALFTVLHSNGATTFSEVMSNFPASIPSMLGAFVGLTPEDRRHLAEAVPILIKAATAKHKTDSANAKAAADADEPNGTPATEQKNEPNDKPTDV
>NZ_CP053940.1|WP_014483444.1|125551_126217_+|TetR/AcrR-family-transcriptional-regulator
MPRPRHDSEVLPAKERLENAFWELLADRDYRKITVTDVVSEAGVNRNSFYYHFSGLPELADSAILHQVESIPINRTPDPNGNPEEQWRERITATLANPEQRQRLDRLALLAGPHSTLELTESLRDFCRLQMISMLQRDPEHLDLTTDLMIEFTVGGMLAVLQRWPKLSGTIEIKDLLKEDVAVLAMGIYLAMSREDMLDYWNRIFAHGPQNSNNTAAGHHN

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Crispr_ID: NZ_CP053940_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053940_2

679304-679380

Orphan

Consensus_repeat	Method
CGGGGTGGTTCTTCGGTTGGTTGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP053940_2

>merge|NZ_CP053940|2|679304-679380|CRISPRCasFinder
CGGGGTGGTTCTTCGGTTGGTTGGGAGATTTGCCCCGTTGAGGGTCCGTGGACGGGGTGGTTCTTCGATTGGTTGGG

>NZ_CP053940|2|2|679304-679380|CRISPRCasFinder
CGGGGTGGTTCTTCGGTTGGTTGGG	AGATTTGCCCCGTTGAGGGTCCGTGGA
CGGGGTGGTTCTTCGATTGGTTGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053940.1\|WP_042994359.1\|694501_695521_+\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|223390
NZ_CP053940.1\|WP_042994368.1\|679662_680364_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NZ_CP053940.1\|WP_003829602.1\|676057_676900_+\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP053940.1\|WP_042994360.1\|692423_693842_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340890
NZ_CP053940.1\|WP_042994362.1\|691377_692319_-\|FAD:protein-FMN-transferase	unknown	unknown	gnl\|CDD\|376782
NZ_CP053940.1\|WP_003829589.1\|670697_671075_-\|DUF4235-domain-containing-protein	unknown	unknown	gnl\|CDD\|379422
NZ_CP053940.1\|WP_015439325.1\|673816_674833_-\|LacI-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224525
NZ_CP053940.1\|WP_003829594.1\|672262_673609_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|379175
NZ_CP053940.1\|WP_003829587.1\|669834_670602_-\|nitroreductase-family-protein	unknown	unknown	gnl\|CDD\|380322
NZ_CP053940.1\|WP_014484409.1\|675203_676058_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP053940.1\|WP_172886359.1\|680454_684132_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|274008
NZ_CP053940.1\|WP_032734693.1\|695641_695989_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053940.1\|WP_003829604.1\|677051_677657_+\|DUF624-domain-containing-protein	unknown	unknown	gnl\|CDD\|377412
NZ_CP053940.1\|WP_050825218.1\|686834_687356_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
NZ_CP053940.1\|WP_042994364.1\|689539_691369_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP053940.1\|WP_042994365.1\|687539_689408_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP053940.1\|WP_015439328.1\|666921_669669_-\|YhgE/Pip-domain-containing-protein	unknown	unknown	gnl\|CDD\|224428
NZ_CP053940.1\|WP_003829606.1\|677708_679181_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|224038
NZ_CP053940.1\|WP_042994369.1\|671146_671860_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366010
NZ_CP053940.1\|WP_042994367.1\|684385_685909_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|224038

Protein	Function_ID	Function_description	E-value
NZ_CP053940.1\|WP_042994359.1\|694501_695521_+\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl\|CDD\|223390	COG0313, COG0313, Predicted methyltransferases [General function prediction only].	9.97036e-105
NZ_CP053940.1\|WP_042994368.1\|679662_680364_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	4.75911e-99
NZ_CP053940.1\|WP_003829602.1\|676057_676900_+\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	1.68174e-62
NZ_CP053940.1\|WP_042994360.1\|692423_693842_+\|MFS-transporter	gnl\|CDD\|340890	cd17332, MFS_MelB_like, Salmonella enterica Na+/melibiose symporter MelB and similar transporters of the Major Facilitator Superfamily. This family is composed of Salmonella enterica Na+/melibiose symporter MelB, Major Facilitator Superfamily domain-containing proteins, MFSD2 and MFSD12, and other sugar transporters. MelB catalyzes the electrogenic symport of galactosides with Na+, Li+ or H+. The MFSD2 subfamily is composed of two vertebrate members, MFSD2A and MFSD2B. MFSD2A is more commonly called sodium-dependent lysophosphatidylcholine symporter 1 (NLS1). It is an LPC symporter that plays an essential role for blood-brain barrier formation and function. Inactivating mutations in MFSD2A cause a lethal microcephaly syndrome. MFSD2B is a potential risk or protect factor in the prognosis of lung adenocarcinoma. MelB-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.2736e-44
NZ_CP053940.1\|WP_042994362.1\|691377_692319_-\|FAD:protein-FMN-transferase	gnl\|CDD\|376782	pfam02424, ApbE, ApbE family. This prokaryotic family of lipoproteins are related to ApbE from Salmonella typhimurium. ApbE is involved in thiamine synthesis. It acts as an FAD:protein FMN-transferase, catalyzing the attachment of an FMN residue to a threonine residue of a protein via a phosphoester bond in such bacterial flavoproteins.	5.09687e-23
NZ_CP053940.1\|WP_003829589.1\|670697_671075_-\|DUF4235-domain-containing-protein	gnl\|CDD\|379422	pfam14019, DUF4235, Protein of unknown function (DUF4235). This family of integral membrane proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are typically between 88 and 119 amino acids in length.	4.09412e-11
NZ_CP053940.1\|WP_015439325.1\|673816_674833_-\|LacI-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|224525	COG1609, PurR, Transcriptional regulators [Transcription].	3.61006e-78
NZ_CP053940.1\|WP_003829594.1\|672262_673609_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|379175	pfam13416, SBP_bac_8, Bacterial extracellular solute-binding protein. This family includes bacterial extracellular solute-binding proteins.	7.00175e-35
NZ_CP053940.1\|WP_003829587.1\|669834_670602_-\|nitroreductase-family-protein	gnl\|CDD\|380322	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA. This family contains NADPH-dependent flavin reductase and oxygen-insensitive nitroreductase. These enzymes are homodimeric flavoproteins that contain one FMN per monomer as a cofactor. Flavin reductase catalyzes the reduction of flavin by using NADPH as an electron donor. Oxygen-insensitive nitroreductase, such as NfsA protein in Escherichia coli, catalyzes reduction of nitrocompounds using NADPH as electron donor.	1.55485e-77
NZ_CP053940.1\|WP_014484409.1\|675203_676058_+\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	1.2199e-52
NZ_CP053940.1\|WP_172886359.1\|680454_684132_+\|ABC-transporter-permease	gnl\|CDD\|274008	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins].	5.46274e-20
NZ_CP053940.1\|WP_003829604.1\|677051_677657_+\|DUF624-domain-containing-protein	gnl\|CDD\|377412	pfam04854, DUF624, Protein of unknown function, DUF624. This family includes several uncharacterized bacterial proteins.	1.29089e-07
NZ_CP053940.1\|WP_050825218.1\|686834_687356_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	1.527e-14
NZ_CP053940.1\|WP_042994364.1\|689539_691369_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.74447e-179
NZ_CP053940.1\|WP_042994365.1\|687539_689408_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.38443e-141
NZ_CP053940.1\|WP_015439328.1\|666921_669669_-\|YhgE/Pip-domain-containing-protein	gnl\|CDD\|224428	COG1511, COG1511, Predicted membrane protein [Function unknown].	3.4728e-89
NZ_CP053940.1\|WP_003829606.1\|677708_679181_-\|amino-acid-permease	gnl\|CDD\|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	0
NZ_CP053940.1\|WP_042994369.1\|671146_671860_+\|histidine-phosphatase-family-protein	gnl\|CDD\|366010	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches. The larger branch 1 contains a wide variety of catalytic functions, the best known being fructose 2,6-bisphosphatase (found in a bifunctional protein with 2-phosphofructokinase) and cofactor-dependent phosphoglycerate mutase. The latter is an unusual example of a mutase activity in the superfamily: the vast majority of members appear to be phosphatases. The bacterial regulatory protein phosphatase SixA is also in branch 1 and has a minimal, and possible ancestral-like structure, lacking the large domain insertions that contribute to binding of small molecules in branch 1 members.	2.95393e-48
NZ_CP053940.1\|WP_042994367.1\|684385_685909_+\|amino-acid-permease	gnl\|CDD\|224038	COG1113, AnsP, Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism].	2.196e-154

>NZ_CP053940.1|WP_003829606.1|677708_679181_-|amino-acid-permease
MSTTDAPKKPRETDDVPVPATLRKSLKNRHIQLIALGGAIGTGLFYGSSESIALAGPSILLAYLIGGFAIFMIVRALSEMSVEDPKAGAFSYYATRYWSKRAGFISGWNYWFNYILVSMVELAVVGSFVNYWFPAIPTWVSAAVFLVLITAANLLGVSKFGEFEFWFAIIKIVAVIAMIIGGLAVIIFALPTASGIKASFANWFTVGGGFFPNGLMGHTDNGWTGLLMALVVVMFSFGGTELIGITAGETEDPRTTIPRATNDIIWRILVFYIGALGVIMAVVPWNTIDGKSSPFVQIFDSVGIHAAAGILNFVCLTAVMSVYNSGLYANSRMLYSLAKQGNAPAYLGKLNSKGVPVAGVLTSAVITAIAVVVVFVWPEFAFNYLMSIATIAGIINWTMIMFTEMKFRKVVEAGGAPEDSNLAGKSGQEALDAIHFKLPFAKVTPWVVLVFLALVVVLMCFSASYRIAVIAGVIWLAILFVAYQITQAKK
>NZ_CP053940.1|WP_003829604.1|677051_677657_+|DUF624-domain-containing-protein
MNWLAPDSKFMRAWSNLIDGVWVNILMLVTSIPIITIGAALTAGHDACRRSIEGEGKGVTANYFRSFKANFVKATLLWLPFLVVLIALAWSWIVLQFTPLLIIKFALTIIWLIGFEWVFALQARFENTVAGTLKNAFIFGISHIAMTAALVVVDAVFVALLVGSWFYMPGGLFLLVILGYGTMLMLHIPVTERVFKPYLQQ
>NZ_CP053940.1|WP_003829602.1|676057_676900_+|carbohydrate-ABC-transporter-permease
MNENKPVKHGALWTVLFAVVSLFWIFPIVLVLINSFKQKAYISKNAFSLPAGKAFVGFENYVRGVETTQFFASFGWTLLITVGSVILILVCTSMCAWWIVRVNNWAAKLLYTLFLFNMIVPFQMVMFTLSKIADMLKLNTPWGLCIVYLGFGAGLAVFIFTGVIKGIPAELEESAMIDGASVPRIFFQIVVPIMKPSIVSVAILEAMWIWNDYLLPYLTLDLGKYKTISVAVQYLKGGYGSVDMGAMMACLVLAIIPIIVFYLVCQKYIVSGVMAGAVKG
>NZ_CP053940.1|WP_014484409.1|675203_676058_+|sugar-ABC-transporter-permease
MISMAGKAIRRWWALFALPTFAAFIIGFLVPFIMGVYLSFCEFTTVTDGEWIGLKNYTKALKDKEFLHALGFSTAFTIVTTIVINVIAFAIAYMLTKAIKGSTLFRSVFFMPNLIGGIILGYIWLLLLNGVLAHWGRALTYKASYGFWGLVILVCWQQIGYMMIIYIAGLQALPTDVLEAAAVDGANGRQTMFRIIIPLMMPSITVCSFLTVTNGFKLYDQNLALTNGAPSNMSEGLALNITRTFYGRMGWEGVGQAKAVLFFILVAVIALIQNKLTTSKEVAA
>NZ_CP053940.1|WP_015439325.1|673816_674833_-|LacI-family-DNA-binding-transcriptional-regulator
MTTSIQDVAQKAGVSISTVSRSFTRPDLVSTKTRERVLAIADELNFSLSRSAAALKSGRSLRIAVLMSGHIRLWFTASVIEGLNEVLHAAGYDISVFQISSIEERREFFEMLPVRRNADAVIVVSFDIDNNEITQLASADVPIIGINSVDPEVRGFTAAVNINDVQGSTLAARHLINLGHRDIAYISTDRDVSLNFSVQNRFGAFTECCRNEGIEPQVIVCKVDDAGRYQISDVVTQLMSLPKLPTAIACQEDGIALPLMFQLERNGLSVPGDVSLIGYDDSFYTDDIGLTTIRQNPVGMARKAAHMTLDLIEEKPVDEPYVVAPAHLVVRSSTAKIR
>NZ_CP053940.1|WP_003829594.1|672262_673609_+|ABC-transporter-substrate-binding-protein
MKEKGSMMNRTVKSAVAVAAIAAMSLGTLAACGSSTSGDDSKGKVYYLNFKPEAADQWAALAKEYTKEKGVEVKVQTAASGTYEQTLKSEIAKTEAPTLFQVNGPVGYQNWKKYTADMSKTDVYKELTNQDVALKDGDKVVGVPYVMETYGLIYNKDILNKYFALDGAKATSMDEIDNFDTLKAVADDMQSRKDELGIKGAFTSAGFDSSSDWRFKTHLANLPLYYEFKDDNVTEQPAKIKGTYLPNYKKIFDLYITDSTTEPTQLSAKTGDDANSEFALGEAAFYQNGTWAWTDLQKAGMKAESVGMMPIYIGVKGEEKQGLATGSENYWCINDKASDADKKATEDFLSWVITSDAGKKALSQDMGFTTPFKTFDDVKSDNPLTEAAVEDQKSGKTQVSWNFTMMPSEEWKNKIGQALLEYAQGTGNWDAVKATFVDGWASEYEASH
>NZ_CP053940.1|WP_042994369.1|671146_671860_+|histidine-phosphatase-family-protein
MSEQHMDGTVAVDASCGKAGFLVLLRHGQTFWSESGQHTGRTNIPLTEVGRQQAMDAGARLREAFPEGFDPECVFSSPLKRACQTAELAGFAQHGILDGIAEWDYGRAEGRTRQQVSEASGFSWDVWRDGPRSLTPTLEGDWVDTLPDGEQVNVHSGAGETLDEVAARARTDIEEVTPLLQSGRNVLLVAHAHILRILTSQWLNVDPQFARLLRLDTAHYSVLSVYKGDNVIERWNA
>NZ_CP053940.1|WP_003829589.1|670697_671075_-|DUF4235-domain-containing-protein
MSDETSTGIASDADRVVEGLHRIDQKVDDLRNQRLNDPDSLGDKLVKSAVPALAGLVAGKLFQIAWDKGAARRNVIKGLAADAPQGLAMSLAFAAISAAFGAIVSQLSNQGSQAFVERRHRKASR
>NZ_CP053940.1|WP_003829587.1|669834_670602_-|nitroreductase-family-protein
MATNATIETLLNRRSIRKFKDEPIDDDATATLETVAQHAASSQFLNDWSAIRVSDPAIKARLAEIGNQPYIATAPLLYVFVIDEHRNAHIAQRKGIDPTSDEFHLKYSYRFTQAQNDAVLALHAMETAAYSLGLGGVILGSLLNDIPALIDLLNLPEYTYPVLGLALGKPDQEPTLKPRMPRSMQFFDNTYPADDDGMLEQLPDFDNKVHQYYDLRQTDRPVDAFSDQIASVSRQGVSGKTLLDKAAAQGFQLDK
>NZ_CP053940.1|WP_015439328.1|666921_669669_-|YhgE/Pip-domain-containing-protein
MRTVWQVFLRDCKRILRNPVAAVVTLGVAVLPSLYAWFNILANWDPYSATGNLQVAVANEDRGTTNDLVGHLNAGKQVVIKLKHNDQLGWRFVSNEEQAVQGVQTGDYYAAIVLPKDFSASLVDSLTGTSKQPKIKYYVNEKKNAIAPKITDTGATTIDEQINSTFVTTVSNTVAAAISQAGDDLDQATNSTQNNVVADLGSVLSTIATVQDALTDLRTTLDQSDTALADARSTTASLQRSITAAQQASQQSGALLAETQDGSQVFAASLVSALDTSSAQLSGLTVNVNNAAGTINQSFNTAQNSVDTITNALNSPLDKTATSLDTLKDALNKAGISADTTDPTGKRIWDHINAIDDAISTQQAKINTFHEDTTRFIDSGKSATTNLSGAMSGTATGGIAALNTARSSLTGTVMPSLTSSLNSFAALNGTLNGTLTSLSGTLDQTNGLFDQLSSTIAQTRTTIGSAQDSLNQIIDDVSTVRTDVATLDSSAVYQKIRDTMHLDDKGFGEFMGSPVTLTTKVVYAIDNYGSAVTPFYTNLALWVGGFVLIAIYKLEVDRESIRRINAKQAYLGRWMLLVTIGFLQAIIATVGDLVLGIQCEHPLLFILAGIFCSFIYINIIYALAVAFRHIGKAIAVILVIVQIPGASGLYPIEMMPDFFRKLHPWLPFTYGINAMRGPIAGTYSNHYWLDMLHLFWYLPAALFVGLVVRRYAMNLNALFDRRLGDTDLMITEHNSMVNEQVSLASVFRTVSDSKELKAIITRRAHRFFARYPMMIVAGLALLTILPFVFLILLFVTQEKIAMLTSWILSIILIDAYLIVVEYTRESYAMQLGVSAMNADEFRDVMLNGYVWRRFRSHGRHEAASAESAVDTDPDIGEVTEQLTPFERTGSTDSSDSSKSSESTITDTNPAQGGAR
>NZ_CP053940.1|WP_042994368.1|679662_680364_+|ABC-transporter-ATP-binding-protein
MAYIEFDKVVKEYPSGGTSIRALDEASFTADQGELTVILGQSGAGKTTALNILGGMDTATSGRVVVGERDITGLRKRDLITYRRNDVGFVFQFYNLVPNLTALENVELASQICPDHFDPAETLRKVGLGERMNNFPGQLSGGEQQRVSIARAIAKKPKLLLCDEPTGALDYETGKEVLQLLQDICRDEGMTVMVITHNSALAPMAHKVIHFRSGTVTSEEINTVPQPIADIEW
>NZ_CP053940.1|WP_172886359.1|680454_684132_+|ABC-transporter-permease
MKRPVKQSESDDRGSSVSAVFVKDALRCWLRSWKRFVSIAVITLLGVAVLTGIYAGCRDAFLAASRFYDQQGLHDLQVLSTYGLTGDDVAALRRVEGVETVQPERSQTVTATVKGTKKTVTMQGIGTEGLDQPYLQQGDMPSKAGEVAVTQQFLNDSGLEIGDDLTVTPRSASSTVLVGAEDKSNSGSSKSSDGDTGTVGAAEDATTSNNEKEQSPQFPTELTITAVVLDPSDLNNPAGYSGMTAFRSTSSEDYVFFAPSDVVTGNVYTAISIAVAGASQYDTFSDDYDAAIKTVADRIESQIQTQRQKARRQQIVTSAQNTLDAAKADALKQLDEGQQQIDSNRAELEANETKLAESRTQLEQNKASITDGERQIAEGRAQIASARQQIAQGRQQIAGARAQLESGKTQLTSARQQLDAARAELTANRSKVEQGIAQIDQGVAQLDQMLQLIQQADDLLSQLDPNIDIDSSTWQTVKQLLTSLGITVPDVPSISSLRQQLDAKQNELQSQRSDAIKQKTELQQTLDGTIAPAQNALDQQNAQLTAKEQEAAAGEAELNAKLAELESNTAQLETQSAQLEAQAAQLASGKQQLEEGEKQLKDGEQQLEDGKQQLEDAQQELDEKRSEAESEFAKQQRRIDDVANARWYMQTRSSIDGFSSLKSDVSSIESIGRAFPVVFLLVAVLMSLTTMTRMVEEDRGLIGTYLGLGYGGVVVSLRYLLFALLACLFGGGVGLLVGFLGIPAFLLIVIKGLYILPDVRLEYDWGYGTAGILLFVVGVGVATALACRSEIRHTPAALMRPKAPKAGARILLERIRPVWNRLSFLGKVTARNIFRFKSRLLMTVGGVAGCTALIICGFAINDTVDTIGVKQYGQIYQYDLMVVSNDDDAAAMRKQVKKDGRTTETLNLRVDSAEMSNAAQESETIQLMAVPNNSLNKLNDMVTLEEAGDEGWFGLPNFFGASGGGTVTLDDSGVIVAQSAANSLGVHTGDTVTVSNGGSSRAKIKVAAVVRNLIGSDVYISERLYDQKFAARGIDSSVSDGESSTLTWNAMLAKLKGSDGEQAEYADRLGEESSVVKAVSCAHLEATFKFDLMAAVVALIVGLAGGLALVVLFTLANTNVSERVREMATLKVLGFYDREVHNYVNREMMILTGMGVVVGLPLGRWIGGLLTAALNMPSLYFEVEVHWYSYAIAVAATLAFALLVQLFTNPVLDRIEPVSSLKSVE
>NZ_CP053940.1|WP_042994367.1|684385_685909_+|amino-acid-permease
MADTNANGNAQQSGSKLKSVESLDQTNAMERGLSNRHVQFIAIGGTIGTGLFLGSGKSISLTGPSIVFVYILVGVIMFFLMRAIGEMMYRDPSQHTFINFITRYLGNGWGHFAGWTYWAALVLLGMTEITAVSTYFITFFDTFGIDLTHWKWLIELCFLVSLVSVNLIAVKVFGEVEFWFSMIKITLIGAMIVTAVVMIVVGYQYPAARIHGVDHVSPAGHAGLDNLFAGFSFAPNGWMAFLMSFQMVFFAYELLEFVGVTVSETKNPRKVLPKAVNEIIVRVLVFYVGALVAIMCIVPWTSFKPNEDGSFASPFIMVFQYAGLNWASALVFFVVITAASSSLNSLLYSAGRHLYQLSEVSPSPLLNKIGQVSDRKVPARAILVSAVLILLSPIVNAIPGVSGAFVLFSSASSAVFLFIYILTLVAHRKYRRSDDFIPDGFVMPAWKVLNTVAIVFFVFIYLTLFLADDTRNSAIAGLVWLIGFGGFSLLRERYRSRDLKAALEHKE
>NZ_CP053940.1|WP_050825218.1|686834_687356_+|MarR-family-transcriptional-regulator
MGFEQEAVGELYASVWGNRSKMQREFTRGAHGEQFVLRELSLKGTQTPSQLATALQASSGRISTVLSSLEKKGWITRDIDSNDRRIIRVSLTDSGREESHRMIDEMRSAICWIFSQMGERRTREFVDLLSEFTTYMSICHPGQPRPTPEQVRGAFAERDKRVAEHMAAKHAEG
>NZ_CP053940.1|WP_042994365.1|687539_689408_+|ABC-transporter-ATP-binding-protein
MFRIMKYLSKAEIGQMLIALVSIVGQIWFDLELPDYMSDITTLVETPGSAMADIWTAGGKMLLISLGSVCCAIITGYIAARVASSFGQRLRSLEFRKVESFGPAEMSKFSTASLITRSTNDITQIQMFITMGLQLIVKSPIMAVWAVCKIAGEGFEWTVATAIAVVILLVAVVILMALVMPKFKAMQGLTDNINLVARENLTGLRVVRAYNAEDYQESKFTKANKDLTDTQLFTNRTMAIMMPLMNTVMNGLMLAVYWIGAYLIEAAELTDKLTVFSNMVVFSSYSVQVIMSFLLMSMVFVLWPRADVSAQRVMEVLNTEPIVKNGTKRVADIAKTGQTGTVEFKDVSFTYPDSREAMLQGINFKAEKGQTVAFIGSTGSGKSSLINLVPRFYDVSAGQVLVDGVDVRDYDMVALRDKIGYVPQRSVLFKGTVAGNISYGDKPGENDAVELADTSTPAGRKREALQLAADAANDGKLTDEQMSRVKAAADVAQASEFVNRMDGGFDSPIAQGGSNVSGGQKQRLSIARAVYRHPEILIFDDSFSALDFKTDRAVRDALAEEAKDSTKLIVAQRIGTIMNADRIVVLDEGKVVGQGTHRELLENCEVYRQIAESQLSESELTA
>NZ_CP053940.1|WP_042994364.1|689539_691369_+|ABC-transporter-ATP-binding-protein
MPRGPMGRGGAVEKPQDFGKVMGKLVRFCRKYVPAIIIALVLGAAGTICQIIGPDKLKDMTNEITKGLPAVVHGKPVLNSIDMGAVARIGWLLVVLYVGYALLSYIQSWMMATVTQRTAQELRESISKKINKLPLSYFDKVSYGDVLSRITNDVDAIGQTLGQSLGSLITSATLFVGALVMMFYDNWIMALCAIGSSIIGLIIMMVIMKASQKYFTRQQVALGDVNGHVEEMYAGHTIVKAYNGEADSIRRFERYNADLYDSGWKSQFLSGLMMPLMNFVGNFGYVVVCVVGAALAMDGQIEFGVIVAFMMYIRLFTQPLSQFAQAFQNLQRCAAASERVFGFLEESEMADESGKQALLGAQGHEVHGDVEFSHVRFEYEAGKPIINDFSASVSSGQKVAIVGPTGAGKTTMVNLLMRFYEIAGGSIAIDGVDTKSVPRWNVHDQFSMVLQDTWIFNGTVRENIAYSKPGVTDERIISACKAVGLHHYIMSLPNGYDTVLDENSSLSAGQKQLLTIARAMVQDAPILILDEATSSVDTRTEELIQKAMDALTVDRTSFVIAHRLSTIRDADMILVMNHGDVIERGTHEELLAAGGFYADLYNSQFALSD
>NZ_CP053940.1|WP_042994362.1|691377_692319_-|FAD:protein-FMN-transferase
MTGLTEQLPHTAAFPNALGTGLLLHTASALGGDLHQHIEDLISDYENVLSRFKGDSIVGQMRVATHGGTFDFPDWTLNLFDLYDHLFSATNGAIDPCVGEDLIRLGYDKSYSSVNEPNAAEHTGAIHGRATWDHAIEHHGTTLVTHGPVALDFGACGKGYLVDLIAERLGAAQSDLRYVIDAGGDLLVHTSEPITIALEDPSDPANAVGVAEISQGAFCASSPSRRHWTDAAGHQLHHLLNAIDGVPVNSVAATWVAATPPSLATAQADGLATALFTTPAAQLRAHFPFECAILTADRSAAQSPDFPGSFFMR
>NZ_CP053940.1|WP_042994360.1|692423_693842_+|MFS-transporter
MDNATAVSATNVSGGSLQSTIKDLPIAKVWAFAVGQFGWALLSGIISNWLVYFYQPDQETISQGQTVFVPQGLVVLGLVTVVGGITAFARFFDAFVDPAVASLSDRCDSKAGRRMPFLKFAALPLAVVTVLVFWSPINGTSWVNAAFLFVTVIGYYIALTFYCTPYNALIAELGHDSKQQLTISTAISFTWVAGTAIAYVAPVIWGAFVPMMGRITAIRVTFTIMAAVAFACMLVPPLAIREKDYVNSQPTSESTIESLKQTFSDGEFRKFVCSDVVYWVAITTFQTGLPFFVTSLLKLPETTTTIYFVLMTGVSVLFYLPVNILANRVGKKRLLLIAFVIFTCAFAFAGALGSGVLAFMPAMAQGLTLSVVGAIPMAAFGILPQAIVANIADASSKTTGQDRQGMFYAARTFAMKMGQSVAMLLFTGVSTIGMASGAGYRIAAVCAAVLCGLGGIVFAFYNEKKVLHVLGA
>NZ_CP053940.1|WP_042994359.1|694501_695521_+|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MTSADELNEQRDAEQSVAQVFERNDGNDGIDAGEPAASQTRESAVTIPAGTVVLAATPIGNVGDASARLVVFLERADIVAAEDTRRLFDLARRLGVYVNGRVVAYHDHNERDKADGLLDQVETGATVLVVSDAGMPTINDPGLAIVRRAIERGLPVTCAPGPSAVLDALALSGLPTDRFCYEGFLPRKHAERVQYLRTLLGERRTIVFYETPHRIADSMDDLLDAFGPNRPMALCRELTKDYEQIRRGPIGEIRQSVIDDPPRGEMVLVIGGASSEEAEAAAPSTLSVEDMAVLAIDRALEDGLRIKDAIAQVVQEHPLADGSLANRKQVYAAVLEIKG
>NZ_CP053940.1|WP_032734693.1|695641_695989_-|hypothetical-protein
MRITGRHASRRLDRLHQAQRLPRASDIQSHSPHASAAVNHDAPPSPPIALTPSVACSPDTPIEVLWHIAQHAPELRRWLIANPRADAALLEFISQAGGPGVKRALAVLLESMEEE

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Crispr_ID: NZ_CP053940_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053940_3

826873-827019

Orphan

Consensus_repeat	Method
CTTAGCGACAGGATTTTAGGAGATT	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP053940_3

>merge|NZ_CP053940|3|826873-827019|CRISPRCasFinder
CTTAGCGACAGGATTTTAGGAGATTATCCCAGTCGTCCTAAATTACTGTCGCTAAGTGAGTCTTAGTGACAGGATTTTAGGAGATTGGGGTTGGTTTCCTAAATATCTGTCATTGGCTTTGACTCAGTGACAGAATTTTAGGACGAA

>NZ_CP053940|3|3|826873-827019|CRISPRCasFinder
CTTAGCGACAGGATTTTAGGAGATT	ATCCCAGTCGTCCTAAATTACTGTCGCTAAGTGAGT
CTTAGTGACAGGATTTTAGGAGATT	GGGGTTGGTTTCCTAAATATCTGTCATTGGCTTTGA
CTCAGTGACAGAATTTTAGGACGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053940.1\|WP_015439251.1\|824361_824589_+\|preprotein-translocase-subunit-SecE	unknown	unknown	gnl\|CDD\|236066
NZ_CP053940.1\|WP_003831625.1\|825804_826758_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053940.1\|WP_038426879.1\|814519_817561_+\|Rne/Rng-family-ribonuclease	unknown	unknown	gnl\|CDD\|273254
NZ_CP053940.1\|WP_019727371.1\|835940_837563_+\|acyl-CoA-carboxylase-subunit-beta	unknown	unknown	gnl\|CDD\|227136
NZ_CP053940.1\|WP_042994332.1\|832955_833555_-\|biotin-transporter-BioY	unknown	unknown	gnl\|CDD\|376871
NZ_CP053940.1\|WP_077320687.1\|847961_848396_-\|NAD(P)H-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223508
NZ_CP053940.1\|WP_025263277.1\|834067_835948_+\|ATP-grasp-domain-containing-protein	unknown	unknown	gnl\|CDD\|227111
NZ_CP053940.1\|WP_003829785.1\|827374_827806_+\|50S-ribosomal-protein-L11	unknown	unknown	gnl\|CDD\|234661
NZ_CP053940.1\|WP_025300057.1\|829723_831823_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053940.1\|WP_042994331.1\|837602_847085_+\|type-I-polyketide-synthase	unknown	unknown	gnl\|CDD\|227315
NZ_CP053940.1\|WP_025300058.1\|828787_829645_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225306
NZ_CP053940.1\|WP_042994338.1\|818396_820088_+\|GTPase-ObgE	unknown	unknown	gnl\|CDD\|237045
NZ_CP053940.1\|WP_042994335.1\|821422_822685_-\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|213024
NZ_CP053940.1\|WP_014484324.1\|817747_818056_+\|50S-ribosomal-protein-L21	unknown	unknown	gnl\|CDD\|235510
NZ_CP053940.1\|WP_042994333.1\|824621_825449_+\|transcription-termination/antitermination-factor-NusG	unknown	unknown	gnl\|CDD\|180161
NZ_CP053940.1\|WP_042994334.1\|822826_824032_+\|pyridoxal-phosphate-dependent-aminotransferase	unknown	unknown	gnl\|CDD\|235596
NZ_CP053940.1\|WP_003829786.1\|827821_828514_+\|50S-ribosomal-protein-L1	unknown	unknown	gnl\|CDD\|180071
NZ_CP053940.1\|WP_003829776.1\|818078_818330_+\|50S-ribosomal-protein-L27	unknown	unknown	gnl\|CDD\|235464
NZ_CP053940.1\|WP_042994336.1\|820193_821327_+\|glutamate-5-kinase	unknown	unknown	gnl\|CDD\|235460
NZ_CP053940.1\|WP_003831633.1\|832066_832954_+\|biotin--[acetyl-CoA-carboxylase]-ligase	unknown	unknown	gnl\|CDD\|223417

Protein	Function_ID	Function_description	E-value
NZ_CP053940.1\|WP_015439251.1\|824361_824589_+\|preprotein-translocase-subunit-SecE	gnl\|CDD\|236066	PRK07597, secE, preprotein translocase subunit SecE; Reviewed.	2.83757e-12
NZ_CP053940.1\|WP_038426879.1\|814519_817561_+\|Rne/Rng-family-ribonuclease	gnl\|CDD\|273254	TIGR00757, Ribonuclease_E/G-like_protein, ribonuclease, Rne/Rng family. This model describes ribonuclease G (formerly CafA, cytoplasmic axial filament protein A), the N-terminal domain of ribonuclease E in which ribonuclease activity resides, and related proteins. In E. coli, both RNase E and RNase G have been shown to play a role in the maturation of the 5' end of 16S RNA. The C-terminal half of RNase E (excluded from the seed alignment for this model) lacks ribonuclease activity but participates in mRNA degradation by organizing the degradosome. [Transcription, Degradation of RNA].	5.90146e-153
NZ_CP053940.1\|WP_019727371.1\|835940_837563_+\|acyl-CoA-carboxylase-subunit-beta	gnl\|CDD\|227136	COG4799, COG4799, Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta) [Lipid metabolism].	0
NZ_CP053940.1\|WP_042994332.1\|832955_833555_-\|biotin-transporter-BioY	gnl\|CDD\|376871	pfam02632, BioY, BioY family. A number of bacterial genes are involved in bioconversion of pimelate into dethiobiotin. BioY is a component of the BioMNY transport system involved in biotin uptake in prokaryotes.	7.31325e-28
NZ_CP053940.1\|WP_077320687.1\|847961_848396_-\|NAD(P)H-dependent-oxidoreductase	gnl\|CDD\|223508	COG0431, COG0431, Predicted flavoprotein [General function prediction only].	6.28896e-15
NZ_CP053940.1\|WP_025263277.1\|834067_835948_+\|ATP-grasp-domain-containing-protein	gnl\|CDD\|227111	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism].	0
NZ_CP053940.1\|WP_003829785.1\|827374_827806_+\|50S-ribosomal-protein-L11	gnl\|CDD\|234661	PRK00140, rplK, 50S ribosomal protein L11; Validated.	8.69761e-91
NZ_CP053940.1\|WP_042994331.1\|837602_847085_+\|type-I-polyketide-synthase	gnl\|CDD\|227315	COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein].	0
NZ_CP053940.1\|WP_025300058.1\|828787_829645_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225306	COG2508, COG2508, Regulator of polyketide synthase expression [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism].	1.77745e-16
NZ_CP053940.1\|WP_042994338.1\|818396_820088_+\|GTPase-ObgE	gnl\|CDD\|237045	PRK12296, obgE, GTPase CgtA; Reviewed.	0
NZ_CP053940.1\|WP_042994335.1\|821422_822685_-\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|213024	cd10966, CE4_yadE_5s, Putative catalytic polysaccharide deacetylase domain of uncharacterized protein yadE and similar proteins. This family contains an uncharacterized protein yadE from Escherichia coli and its bacterial homologs. Although its molecular function remains unknown, yadE shows high sequence similarity with the catalytic NodB homology domain of outer membrane lipoprotein PgaB and the surface-attached protein intercellular adhesion protein IcaB. Both PgaB and IcaB are essential in bacterial biofilm formation.	5.84215e-62
NZ_CP053940.1\|WP_014484324.1\|817747_818056_+\|50S-ribosomal-protein-L21	gnl\|CDD\|235510	PRK05573, rplU, 50S ribosomal protein L21; Validated.	4.17736e-35
NZ_CP053940.1\|WP_042994333.1\|824621_825449_+\|transcription-termination/antitermination-factor-NusG	gnl\|CDD\|180161	PRK05609, nusG, transcription antitermination protein NusG; Validated.	2.84273e-65
NZ_CP053940.1\|WP_042994334.1\|822826_824032_+\|pyridoxal-phosphate-dependent-aminotransferase	gnl\|CDD\|235596	PRK05764, PRK05764, aspartate aminotransferase; Provisional.	0
NZ_CP053940.1\|WP_003829786.1\|827821_828514_+\|50S-ribosomal-protein-L1	gnl\|CDD\|180071	PRK05424, rplA, 50S ribosomal protein L1; Validated.	1.72993e-143
NZ_CP053940.1\|WP_003829776.1\|818078_818330_+\|50S-ribosomal-protein-L27	gnl\|CDD\|235464	PRK05435, rpmA, 50S ribosomal protein L27; Validated.	5.68869e-49
NZ_CP053940.1\|WP_042994336.1\|820193_821327_+\|glutamate-5-kinase	gnl\|CDD\|235460	PRK05429, PRK05429, gamma-glutamyl kinase; Provisional.	3.59148e-174
NZ_CP053940.1\|WP_003831633.1\|832066_832954_+\|biotin--[acetyl-CoA-carboxylase]-ligase	gnl\|CDD\|223417	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism].	7.85325e-30

>NZ_CP053940.1|WP_003831625.1|825804_826758_-|hypothetical-protein
MKTHKEVAALLQTAQREQRCAIGDGGKLYTALRRRTKIGEVVSPYPNLFAATSYWKSLNVEQQSMHLIRALAKVHPTWTFAGLSAACVYQYEHSYSLHNGTVDIVSPKGANCGGASGLNRIYMARCSQYRCQGILVTSPARTLIDCASLPFDKALAIYDSALRLQHVTKLDVETLIVQTDCNETNVKRLLRYANPLRENGGESWTYARIRQLGFAEPLFQTEFDNPANPEMPYRVDFCWKLHDGRIIVVEYDGIAKYRDTSNPNRANLMAKFEYERQRDTNLKTQGVTSIKHLFYEDVSDLKRLNALLTAIGIPKIR
>NZ_CP053940.1|WP_042994333.1|824621_825449_+|transcription-termination/antitermination-factor-NusG
MSDELNLENLDAALENVDAAADEAPVADAPAEAVESAEPVAEAPVASPETVAESAEEESEVNESEQAEETDAGQKAVDEFSKSLRTLDGKWYVLHTYSGYEKRVKTNIESRVASFGMEDQIFQVEVPMEEVEKHTEKGKKVITRVRVPGYVLIRMWPDENARRVVRETEGVTGFVGPSKDPAPLSRQEVVAMMAPMIASEALKAAGDKPAAAKKRKVEVSYAVGDQVTVTDGPFVTMAAVVSDVEPTTQKLTVLVSIFGRDTPVELGFHQVQKLD
>NZ_CP053940.1|WP_015439251.1|824361_824589_+|preprotein-translocase-subunit-SecE
MAKTGTNEKAVKPNVFMRIGLFIKQIIDELRKVVTPTAKELFFWSLAVFIFVLLLMALVTGMDFGLGKATLGIFG
>NZ_CP053940.1|WP_042994334.1|822826_824032_+|pyridoxal-phosphate-dependent-aminotransferase
MAQWQILSDRINTVAPSATLAVDSKAKAMKAAGLDVIGFGAGEPNFPTPANVVKAAADACLDPKNYKYTPTPGLPELREAIAAKVLRDSGYEVNADQVVVTNGGKQAVYEAFQILLNDGDEVIIPTPYWTSYPEAVKLADGVPVEVFAGADVNFEPSLEALEAARTERTKAIIVNSPNNPTGAVWKPETVEAIGRWAVEHHIWIISDEIYEHLNYDDARTTYIGAAVPECRDQLLVLNGVAKTYAMPGWRVGWMVAPAEVAKAATKLQGHMTSNVANISQRAALAAVSGPLDEVYEMRKAFDVRRSAIVAALNDIEGVYCPTPTGAFYAFADITALLGKPLGSNGTVCATSADFAAALLDEAHVAAVPGEAFGAPGYLRFSYALADDDLAEGMKRFKDWAK
>NZ_CP053940.1|WP_042994335.1|821422_822685_-|polysaccharide-deacetylase-family-protein
MAKHHESHGSRGTRRSTVEPRVAYSRHAETHSAHGSQLHYGQHASHRSAAAIAAQRTRRIAVLVVAAVVAVALVITVGVVAHGWFVRQSAPSMQQQLPTTAHKSLTRKTVPQLDPGNIVIGVNGSETTYVLKGEQYVEGGAHAIEPEDGVLTGNIVTTGTVDTNTPGDYTVQYTVHDSTGHEASATRTVKVVDTMDKQTGGIPVLMYHYVYDPANPPADVDANWIPTTSLEPQLQYLTQNNFYYPSWPEVRAFIDGKHSLPKNSIVMTFDDGEPHFFQYGTPLLAKYKVPATSFIIGADGEALNKMKTYATPYLEYESHSFDMHRAGGTVGHGGRISAMSHQEIVDDLKQSEQVTGSLQAFAYPFGDTTPDAIEAVRETGTLAAFTTQYGWADVGADPMNLPRVRIQGTGSLDTFIAAIQ
>NZ_CP053940.1|WP_042994336.1|820193_821327_+|glutamate-5-kinase
MSTPSQAEVRRMIAAAGTIVVKVGSSSLTQPSGHLDPDKLDALTAALAQVWLMGARVVLVSSGAIAAGFGPLGFDERPADVATQQATAAVGQGLLMARYEAAFGRFGIRVGQILITAEDTIRATQYRNVERTLDRLLDLGVVPIINENDSLASNEIRFGDNDRLSALVANLVRAEALVLLTDVDALYTAPPAQPGSRRVEYVPNVIDALGDIRVSGSGSKVGTGGMVTKLEAARVAAVSGIPTVLTCASNAGPAMMGDPVGTVFAPVKARGSSRRLWIGFAAEPRGTIVVDAGAAKAIRGGRASLLAAGALDVHGDFSAGDPVWIDDESGTHLARGLAGFDSEEIPQTLGRNTAQLKRFLGDQYAHPLVHRDNLVLV
>NZ_CP053940.1|WP_042994338.1|818396_820088_+|GTPase-ObgE
MSDFVDRVTVHVRGGDGGNGSAGIRREKYKPLAGPNGGNGGDGGSVVFVADRNATSLLDYRFMPHRTAGNGTMGLGDNKDGSKGEDLILPVPCGTVVFEARGEQGKTKHPGEQLADLRHEGDRVVVAQGGAGGLGNIALANRTRRAPGFALLGELGEERDVILELKSIADVALVGFPSAGKSSLIAAMSAAKPKIADYPFTTLVPNLGVVIAGDSRYTIADVPGLIPGASEGKGLGLEFLRHIERTEIIAHVIDCATLEPDRDPMSDYQALENELALYADKLELPLGAIPIPERPRIVILNKIDVPEAKELAEFVRPEFEKLGLKVFEISTASHEGLKELNFALAELVHEMREEVASREKAEEEARVVIKPLERTGRRPRRADEGGNALDFTVERRELGNGEVFYEVRGAKPERWVMQTNFDNDEAVGYLADRLAKLGVEDELRRKGARPGDEIRIGRGDRMVEFDWDPTISAGAEMLDGSNLGARGKDLRLEEQDPRAHRRSNAERRAQYHEMMDARAAVRDAMMAERKAGHWADPTVDDDRHDETSLFGHGESADDSASEE
>NZ_CP053940.1|WP_003829776.1|818078_818330_+|50S-ribosomal-protein-L27
MAHKKGASSSRNGRDSSPQYLGVKKFGGEAVVAGNIIVRQRGTNFHAGQNVGMGKDHTLFALADGSVKFGVRRDRKVVDVIAA
>NZ_CP053940.1|WP_014484324.1|817747_818056_+|50S-ribosomal-protein-L21
MYAIVKAGGHQEKVEVGDTILVNRLDAKKGDTVEFPVALLVDGAKVTLAAADLAKVSVKAEVVNDEAKGPKINIQKYKNKTGVARRKGHRQPLTIVKITAIA
>NZ_CP053940.1|WP_038426879.1|814519_817561_+|Rne/Rng-family-ribonuclease
MQRAARSIVPTENREGFVGDETDNSTVSNTESQASGASEPNAEASQPTRRRRGGRRVVRGTGAAGASLELQVQEHAAPLFEAPALPDADASASTGTADNNASDDEKRPARRTRSRRSADNADYEDRPTRRRAVADDDDEPRPVRRRRAVSDDLEEDDERPIRRRRSVIDDLEDDDAPRSSRRRTAVDDSDEDGDRPVRRRRSTTNDRDDRDDEPRSARRTRSRRSSEDAREENPDERVLDVIDALPAGHESARRGKPMTSLLFQEPVLPDMRRDDRDDEEDDGEQRSRSSRRSRAREDEADYEERPSRSRRSNRSDHGDHDDRDDHDDRDDSRNNRRRNEAQDDFDADDQSDSRRSRRSRRLNAQERRAAAEVEQIEEDLELDDITYSPIAEEENDEESDSTRTRSRRRRRRGSRNESGASNNDSESSENNGDDSRRRRDDRDERDRDDDEEQTVTRRRRRRRGGKNAESGDEQDDQQLTRRSRKQQYIDEITDVEGSTRLEAKKQRRRDNRRERSRQSQLMEQDFLARRENVDRLMVVREKEHHTQISVVEDNILVEHYVSDIQEVQTVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEVNWDAARLEGQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLKGIVSKIAPKDMGVIIRTAAEGASEEAIVKDLESLVRQWERINAKREEFWHGKRPKLLQGEPDVAIRVVRDIFNDDFGKLIVEGDKVYGRIEEYLDTMAPDLKDKLEKWDPAEHEGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGRFIGKGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHDQPTVSADYDDPYALRGGDPFVKTNKHGRGTAPAPEPAGSSADVKAKLAQIAAAAVAANNTEEE
>NZ_CP053940.1|WP_003829785.1|827374_827806_+|50S-ribosomal-protein-L11
MAPKKKVSALIKLQIQAGKANPAPPLGPALGSHGVNIMDFCKAYNAQTQDKMGQVIPVEITVYEDRSFTFVLKTPPAAALLKKAAGIEKGTENPLTHKVGSVTKAQVREIAETKMEDLSARDIEAGMKIIEGTARSMGITVTD
>NZ_CP053940.1|WP_003829786.1|827821_828514_+|50S-ribosomal-protein-L1
MVKRSKKYREAAERVDRNNLYTANEAIALLKSMPSYNFDQTVEAVFRLSVDPRKADQLVRGTVNLPHGTGKTAKVLVFARGPKATEATEAGADIVGDDDLIAKVQGGFLDFDAVVATPDMMGKVGRLGRVLGPRGLMPNPKTGTVTMDVTKAVKDIKGGKIEFRVDKNGNLSFLIGKMSFDESALDENFKAVADEVKRLKPSTVKGRYLTKATITSTMNPGVPVDPNTLA
>NZ_CP053940.1|WP_025300058.1|828787_829645_-|helix-turn-helix-domain-containing-protein
MSDFLELLAADAANSSDFTDRSGISATDRARTVLFECLFNHLADDRVASLFTILGFEHDFTCYAIAGYPARSAARSRVDIEKIVADFGGTCLTAERPITGLTGADNGTGRTAVVALIRPVGAATPEIICNTIAPAFDADRPIALGSQRTGAEGAMRSVQATLYCLRAAPALAATAQSLPRPLRTDDALPERALIGDEDARDELIRVVYGSLTAAGPDDPTLLTVSTFLKYGGSLETCAKELNVHPNTIRYRLKRAAESTGWDATDPREAYVLITAIALGRMATAQ
>NZ_CP053940.1|WP_025300057.1|829723_831823_-|hypothetical-protein
MTSPASSLPAAAAHPRLARVGAAARWMLAVLACLWLALCTAVGPLYWDFENGTIANWNWTNTAFFVLSFAIYLGLIVIMVRFAAGQRVLPRAISGRLNRAGQQHSNQALEPSQSQSVVADSNVSKRHATAASRFATLGRWITRGTNRFWKLALVFFIGWLWVPTTLLAAFGADIRSQIREFSWAWNQWTGLQQPYIGFFSFVPMDIYPTAHYMWPPDSTYLTDQHNVVLTVFYGAVAAFSRYLTGSNDAGIVALAAGQMLLAVFCCAATANRFLNRPWMGVAQSTKDKNGSSTGNVSSTTSARIAQDAAPQLAGGHARFLILAFFLCCPLAVFATISITKSPLFAFSFVWWFGIWYELTQTWKPEGKRKGLTATAPIRLPRHSFVAFVLSTAVMLISAKYAWYIIALQIVLALIADRRRWTTYVVALLIPTMLIHGGISLAISSGAIIGGDPIESRGVQLQMIARVASRNPEGISEEAKKNLSDVFNLDQMADAYSQQDADPVKSSGIQAKKVSYKWRTVMPEDMTNFNKAWFEIVKDNPVIALDALLAKCFGYFNVTDQPYVSMDYYVTSDYVQKNSTWIKSYNHNWRERITGFTRSWGKIPVIGWITHGNFYVVMTLLIGAAEVIRRRWLTLMTHIPLLLLMGVMITAPANNFERHMLPVAFVFGFVVLTYWRESLAERRIARQAQSSASTTTTLPQ
>NZ_CP053940.1|WP_003831633.1|832066_832954_+|biotin--[acetyl-CoA-carboxylase]-ligase
MMIALQAATPQLPRTKAVADQVVAVGETDSTNALAARMIGDGSLTLPERKGGTLAVGVVATDWQSAGRGRNGHTWISQPGRCSTMSYAVRIPRAIATDESVNGWLQMIAGLVTLDALNGMIKEYGAAPNKQDCFLELKWPNDVFCHGLKLGGLLSELVLLPDGEADDDVVVVFGVGLNLALGASRLPTPQSTSLQLHVSGLPSFNEMRDAVAEREVEGFRERLAAFIADPHGQAEALREEMKAVCWARGRQVEAHFTDSTTLIGEAIGLNEDASLILRTEDGTDHTVRTADVGVL
>NZ_CP053940.1|WP_042994332.1|832955_833555_-|biotin-transporter-BioY
MQTSHTTSSTAATASLGRRIVAASWKPALFAVLMWLSAAAGAIPIPGTPVPITLQTFVVMLAGLMLPWRQAGSAVAAYLAAGAVGLPVFAGGASTMALVGPSAGFLFGFLPGVIVIALLRGKANTSSASAAALTAGRYLLAALVGGVVVVYALGFVIQSALTGAPIAAVALASMGFVAGDTIKAVVASLAAAGLSKLGR
>NZ_CP053940.1|WP_025263277.1|834067_835948_+|ATP-grasp-domain-containing-protein
MAHIVKKLLIANRGEIALRVVRTAKEMGISTVAVYSEQDRNSRYVDMADEAYLLSGDTYKDTYLNEDLLIDILHKTGADAVHPGYGFLSEVPSFAQKVEDAGAIWVGPHHTALVDLGDKITARRVALRAKVPPVPGLSEPVTDVRTLLDFAHTHGYPIMMKRTDGGGGHGITVVHDDEELRRFYMNHDALQGGDLKEYFIEKFVDKARHVETQSGRDSHGNFTVYSTRDCSLQRRNQKLVEEAPAPFLPEEIVSTLEEYSRRLFTTVGYVGLGTCEFMVTPNGKVYFLEVNPRLQVEHTVSEEVSGLDLVREQLNIAAGGELTRAPEPRGHSFELRITSEDPATNLTPGSGTLEKIQWPAGPGVRIDTGVEQGDTISPKFDSMMGKVIVTAQNRLDAVARVRRVLDELVIEGVPTPIPLFKEIFRNDDFTAENGHPFSVSTKWLERTYLNRTPASASSGQPASLAGAAAPAAPDKSTSETFVIEMNNRRVKLTVPLDIVENITGSARARGAKRPTQPLRGAGLHNVASGAAKANDGAKSGVIASPMQAVVTRINVSEGQQVAKGDLLVVLESMKMENYVYAPAAGEVKKIFVGPADGVEAGDTLVTLDVNAGKAKAEDSKKEGGND
>NZ_CP053940.1|WP_019727371.1|835940_837563_+|acyl-CoA-carboxylase-subunit-beta
MTDIMDSPAVKAVTAASATNASQPPAHQPLRAAVVKAAELARAAEERARDKQHAKGKKTARERLDLLFDTGTFEEIGRFQGGNIAGGNAGAAVITGFGQVYGRKVAVYAQDFSVKGGTLGTAEGEKICRLMDMAIDLKVPIVAIVDSGGARIQEGVAALTQYGRIFRKTCEASGFVPQLSLILGPCAGGAVYCPALTDLIIMTRENSNMFVTGPDVVKASTGETISMADLGGGEVHNRVSGVAHYLGEDESDAIDYARTVLAYLPSNSESKPPVYAYAATRAERETAKRLATIVPANERQPYDMLEVIRCIVDYGEFVQVQELFGASALVGFACIDGKPVGIVANQPNVLAGILDVDSSEKVARFVRLCDAFNLPVVTLVDVPGYKPGSDQEHAGIIRRGAKVIYAYANAQVPMVTVVLRKAFGGAYIVMGSKAIGADLNFAWPSSQIAVLGAAGAVNIIHRHDLAKAKASGQDVDALRAKYIKEYETSTVNANLSLEIGQIDGMIDPEQTREVIVESLATLATKRRIKRTTKHHGNQPL
>NZ_CP053940.1|WP_042994331.1|837602_847085_+|type-I-polyketide-synthase
MSTFFLNRLTTEPHALAFAGQSAPWPVALADQTTDPSLDEALRGHVAAANRLLAPAAADLLATTGRPVDLFGFTPNPARLSAAADATASVEGVALTQLGALLDLEHLGYSVAAAKPVAVLGHSQGVLAVHMTRAIEAAGSIEAAGKTLDEILAVAALIGAAGTRRVRELGLNPKYGEASPMLSVKGATREQVEALVKRVNNARGPISIAVTNSDNHHVLSGHPEDLAALALETEREHKHQAKLREQKLHGGTVFNPTLEYLEVTLPFHSPLMAEAVEQTVSWAGACGFDQDRTRALAEEVLLNHVDWNARVKALFNAADPAKLWIVDLGPGNTLGKLIGNVVQGTGIGVVEATTLSERSALSTLESEPERTQNWKALAPRVIETPAGAKLVTKFSKLTGKPPVLLPGMTPTTVEPEIVAAAANAGYWAELAGGGQVTAEVFDRHIAALEDELEEGRTVEFNAMFMDRYLWNLQFGSSRIVPKKRASGAPIDGVVVSAGIPELDEAVELIKNLQADGLPYVSFKPGTVDQIRQVVRIAKAVAPTTIMIQVEGGEAGGHHSWEALDDLLAATYAEVRACDNLVLVAGGGIGTPERAADYISGQWAHAYGLPDMPVDGVLIGTAAMTAKEAHTSPEVKQMLVKTPGIPADAKSDDVFAPQAAHWVPSGKSVGGMSSGLSHLHADIYELENDSAECGRLLVRVMKYPEELDSRRKEIIEALSKTAKPYFGDLASMTYLEWAQRFAELAFPWADPTYADRFQHLLQRIEARANDTDSGEFTSKLFAADGVSADEAAAAGLLTRDGILADPAPALEKLALAYPQTAELKVVPADVAWFPVLVREYPKPMPFVPVIDNDLLRWWGQDQLWQSEDQRYSADSVRAIPGPISVAGITTVDEPIADILGRFENAAIERVKAEQNASESNDFAALGEAVSAEDFIRKSPNISWVGHIADNPAYGTALGDQYYEIRAFDAAAGKYDLDIHLDTYWDNDPDGGTSKHAVRDIVIPLIVEGTELGRVPVVDRERLIPDVYAMLAATAGIGNTAITGDKLTEMPTLSVPSDEGAVTANAVTEGETAQNRPFGTATATYTLSANLGFDHEAATGAALPATLQPSRIAPDALVGPAWPAIYTALGSVYVKGYPVIEGLLNAVHLDHLIELEVNEEDLLKHTGETITLKSWAEDYFESASGRVVTIHVTHTAADGTLLARETERFAIRGRVYSDALPADAPEFGDAEHAEVAPTPRRLLRRVKVVAPHDMTAFARTSGDFNPIHTSTRGARISGLAAPLVHGMWLSATAQHAVQALDEKGAHYEIAGWTYNMYGMVQLDDTVEISVERVGKVRHGGMTLEVTCRIGGQLVSRGTALVRAPRAAFVYPGQGIQKQGMVLDERAKSAAARDVWERADKLTRAKLGFSILGLVRDNPKELTANGVTYRHPEGLLNLTQFTQVALATVAFAQTARLREAGADIWPAYFAGHSLGEYNALSAFADVIPLETVLELVFHRGSTMHHLIERDAQGRSNYRMGALRPNQFGVDDAHVKEYVESVAKASGEFLEIVNYNLAGQQYAIAGTIAGLKALKADSARRVAAFGGKPAFMLVPGIDVPFHSTLLRKGVPEFRDKLDALLPAYIDYRGRLVDRYIPNLVASPFEMTKEFAAKILEVVPSERIKAALDDPAVWDSYAADDQKLGRLLLTELLSWQFASPVRWIETQALLFGKREQGGLGIEEYVEVGLGNAPTLANLGTKTLRLPEFAGNDTVVYNVGRDEGRVYMTDTDSLVPDDEPEETAAPVETAPAGGSAVAKLGSSAAADAAPAAAAAPAPAAPVSAAPAGAPSGAAVADLPFKASDGIGVLMAYAAKVRLDQIGSNDTTDTLTNGVSSRRNQLLMDISSELGVASVDGAAEATLDKLAQIVNKAAPNYKPFGAVLSEALRDRLRSLFGAAGVKQQYIRDRVANVWQLGEGWVASVLAALLLDTREGSSSRGGDLAKLPTAAVQNKPEADKLIDAAVEVVAQLKGVAVALPSAGGAAGGAVVDSAALDAFAEKVTGSNGVLAATARFVLNELGVAAPAPEESEDENAVVVAAVEAELGSDWPKQVAPRFDANKAILFDDRWASAREDLARAYYDNDPAALNGSFIGLGKTIAAEAQWFADKSNNDELKAAFQKAASEALESVTSDKNASRYANDIAIVTGVSPNSIAAQVVEGLLAGGATVVATSHSFKPSIKAWAKQAYREHATGNAKLWLVPANLSSYRDVDALVDWVGHEQKKTSGATTMILKPAWEPTLFFPFAAPPVHGTLADSGDLFESQARLMLWGVERAIAGFSHIGADANVQHKLHVVLPGSPNRGVFGGDGAYGEVKSAFDAIVNRARAEKVWSSRVTFAHPKIGWVRGTGLMGGNDPLVAVVERHGIHTYSTAQIAAKLLDLCTAESREQALKAPLDVDLTGGLGSEPIDIKALRAEAMADAEKEASSEKAAIEGEKPEGGAAGSTLKALPTPIVTKQAPVDLADWQNVTARPEDEIVIVSVGELGPWGSGRTRAQAELGIHSDGTVDLSAGAVLELAWNMGLLTWVDSPKPGWYDTDGNLVPEEDIAERYHDEVVARSGIRPFEEGMGDDYKDGADEEEAEVFLDHDVTFSVPTRDVAAEYVKLDEAHTTIAPDEESGEWNVTRHAGSMIRVPRRATMTRTVGGQFPKGFDPTRWGIPASMVGDVDKIALWNIVTTVDAYLGAGFTPAEILESIHPSLVASTQGTGFGGMMSMRKLYLDRFLNHEIPTDILQEALPNVVAAHVMQSYIGGYGNMIQPVSACATAAVSLEEGVDKIALGKADFVVTGAIDDIGVESVIGFGNMNATANSEEMYGKGIDARFFSRANDRRRGGFLESQGGGTILVTRGDIAEKLGLPVAAVVGFIHSYADGAHTSIPAPGLGALAAGMGGKDSKLVRDLAKLGVSADDIAVVSKHDTSTNANDPNESELHNTLAHAIGRTDGNPLFVISQKTLTGHAKGGACIFQVNGLTQLFKSGVIPANVSLDCVDPKLQRDDHMVWIRKPLRIGGGEDEFGRETAGRPVKAGLATSLGFGHVSGFVALVHPGAFEAAVAKADGEAALEAWRERANARLAAGQRHLEEGMMGRAALYEPIDNRRFHEDHRGYDHHEVEKAMLLNPDARLGADGYYEA
>NZ_CP053940.1|WP_077320687.1|847961_848396_-|NAD(P)H-dependent-oxidoreductase
MRALPTTNANPPAAVAAARKAVVEADGVWIFSPEYNYSYPGVLKNLLDWLSPPAGAVPGRVRFRDGRQEGRPVRCRRSVRRRRHARQAQRGAGLWQDRTAAHRQAGRSGSGSRGLGDTDKLTLSDEDEARLAAEADAFLALVAE

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Crispr_ID: NZ_CP053940_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053940_4

1183267-1186271

TypeI

I-C

Consensus_repeat	Method
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	PILER-CR
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CRISPRCasFinder
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CRT

44 spacers

cas2,cas1,cas4,cas7,cas8c,cas5

The CRISPR arrays of NZ_CP053940_4

>merge|NZ_CP053940|4|1183267-1186271|PILER-CR,CRISPRCasFinder,CRT
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAATTTGCGTGGCCTTCCTCCGCCGACACCACGTCCCGGGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATGCCGTGCTACGTCATTACAGTGATGGCAAACGTGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATATCTACGGTGGGCGGCAGTCCGCGCCAACTGAACCGGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATCGATGATATGACGCAGAAAATATTGAACGCATAGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATCTGTTATCAATGAGATGACCCAGCAGACGAACCGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATCAACGCGATGTGGCAGCGTGAATACGCTGCACAGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATAGGAGCGAGTAGGCGGTGTTGTAGCGTGTCCCGTAGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATCATGTCCAGCGTCCGGTAGCGCATGTTGAAATAGGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATGCGTAGAAACTGTCCGAATTTCGACGTGGCGACTTGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATAAGACCTGCAAGCGGCGTCCGAAACTCCATTGTGGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATCTCCATTGGGCTGGATGATACATTGCATCATATCGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATACGAGATGGAACAGCAGGGCGTGGCAACCTCCCGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATCCGTTATCAATGAGATGACCCAGCAGACCAACCCGGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATAATTCAGCAACAGTCCCATTAAATCACATTAAAACGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATAACGCGCTCGGCGTCACGTCGGTACCCACGGCGCAAGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATGAACGTGGCGTGACCGTATGGAACAAACCGGAGGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATAAGTCGGGTGGCCCATGGCGCGGTCTTGCTTCCGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATTCACCTCCTGTTACAATGCGGCTGAGGTTGACTTGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATAGATTAACGACCGAGGATACGGTCTGCCGATTGGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATAGATTAACGACCGAGGATACGGTCTGCCGATTGGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATCACGTGAAACAAATCGCAACCGGGGAACGTAAACGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATCAGCGCTTCGGGCACGACGGATATTGATATGCCCGGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATCATCATATCCGGAGAGCATCTGGACACCGAGCATGGAGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATATAAACAATAATATACCCCACGGCAGTAAGCCGTGGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATCCTTGCAGTCGAACCCAGCCAAGGACGGTGTATGGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATATCTGGAAGTAGATGATGACGATCAGGAGCCCGAGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATTCGCGGTGGCGGGAACAGCGAACACGAACAAGCGCGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATGCCACGCCGAACTGCATGGATGCGATCGCGCCCCGCGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATCCCGGCCGGTTCGGCGGGCACGTCGAGGAAAGCTACGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATGCATCCTCGAACAGCGCCGCCGCATCACCAACCTGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATTTATCCCCACAAACCAAATAAAAAAGCCCGAAAAGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATCTCAGCGACCAGAAGGGCTTCTGCCCGCCGACCACGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATTTTGAGGCGTAGGCAGTGGATTCCGCCATTCGTCAGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATTGGACGGCGAGGGCATGGCGAACCTGCTGACCGGCAGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATTAACCGTGGTGACCTCCGTGATCACGGCGATCAGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATCGTATCGTGTACCGCAGCCGGGGTCGTGGTGTCTGGGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATAGGGTCAATCGCAGGATCAGCCTGGGCAAGAACGTCGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATACCCGACAGGCGAGATCCCACAGAGCGAGCCGCACCGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATGCCTCACGCGAGTGGAAGCCGGAGACCAGGAAGAGGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATCAAGAAGGAAAGTAAACGCATGAGCGGAACCCAAGGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATCGCCTTGACGGGCAGATCAAAGGGGATATGGCGCAGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATATTTGTCCACGACCGATGATGTTTCCCGCCACCGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATCCTGCTGATGGTGTCGAGGATGAGGTCCGCGAGGTCGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATTTTGGAGTGCCTGAGCGTGGATTTCGGTCTGGCGAGTCGCTCCCTGTTTTTAGTCAAGTCGGTGTTTC

>NZ_CP053940|4|1|1183267-1186203|PILER-CR
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	TTGCGTGGCCTTCCTCCGCCGACACCACGTCCCGG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	GCCGTGCTACGTCATTACAGTGATGGCAAACGT
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	ATCTACGGTGGGCGGCAGTCCGCGCCAACTGAACCG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CGATGATATGACGCAGAAAATATTGAACGCATA
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CTGTTATCAATGAGATGACCCAGCAGACGAACC
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CAACGCGATGTGGCAGCGTGAATACGCTGCACA
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	AGGAGCGAGTAGGCGGTGTTGTAGCGTGTCCCGTA
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CATGTCCAGCGTCCGGTAGCGCATGTTGAAATAG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	GCGTAGAAACTGTCCGAATTTCGACGTGGCGACTT
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	AAGACCTGCAAGCGGCGTCCGAAACTCCATTGTG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CTCCATTGGGCTGGATGATACATTGCATCATATC
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	ACGAGATGGAACAGCAGGGCGTGGCAACCTCCC
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CCGTTATCAATGAGATGACCCAGCAGACCAACCCG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	AATTCAGCAACAGTCCCATTAAATCACATTAAAAC
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	AACGCGCTCGGCGTCACGTCGGTACCCACGGCGCAA
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	GAACGTGGCGTGACCGTATGGAACAAACCGGAG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	AAGTCGGGTGGCCCATGGCGCGGTCTTGCTTCC
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	TCACCTCCTGTTACAATGCGGCTGAGGTTGACTT
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	AGATTAACGACCGAGGATACGGTCTGCCGATTG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	AGATTAACGACCGAGGATACGGTCTGCCGATTG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CACGTGAAACAAATCGCAACCGGGGAACGTAAAC
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CAGCGCTTCGGGCACGACGGATATTGATATGCCCG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CATCATATCCGGAGAGCATCTGGACACCGAGCATGGA
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	ATAAACAATAATATACCCCACGGCAGTAAGCCGTG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CCTTGCAGTCGAACCCAGCCAAGGACGGTGTATG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	ATCTGGAAGTAGATGATGACGATCAGGAGCCCGA
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	TCGCGGTGGCGGGAACAGCGAACACGAACAAGCGC
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	GCCACGCCGAACTGCATGGATGCGATCGCGCCCCGC
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CCCGGCCGGTTCGGCGGGCACGTCGAGGAAAGCTAC
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	GCATCCTCGAACAGCGCCGCCGCATCACCAACCT
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	TTATCCCCACAAACCAAATAAAAAAGCCCGAAAA
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CTCAGCGACCAGAAGGGCTTCTGCCCGCCGACCAC
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	TTTGAGGCGTAGGCAGTGGATTCCGCCATTCGTCA
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	TGGACGGCGAGGGCATGGCGAACCTGCTGACCGGCA
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	TAACCGTGGTGACCTCCGTGATCACGGCGATCA
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CGTATCGTGTACCGCAGCCGGGGTCGTGGTGTCTGG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	AGGGTCAATCGCAGGATCAGCCTGGGCAAGAACGTC
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	ACCCGACAGGCGAGATCCCACAGAGCGAGCCGCACC
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	GCCTCACGCGAGTGGAAGCCGGAGACCAGGAAGAG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CAAGAAGGAAAGTAAACGCATGAGCGGAACCCAAG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CGCCTTGACGGGCAGATCAAAGGGGATATGGCGCA
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	ATTTGTCCACGACCGATGATGTTTCCCGCCACC
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CCTGCTGATGGTGTCGAGGATGAGGTCCGCGAGGTC
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT

>NZ_CP053940|4|4|1183267-1186203|CRISPRCasFinder
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	TTGCGTGGCCTTCCTCCGCCGACACCACGTCCCGG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	GCCGTGCTACGTCATTACAGTGATGGCAAACGT
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	ATCTACGGTGGGCGGCAGTCCGCGCCAACTGAACCG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CGATGATATGACGCAGAAAATATTGAACGCATA
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CTGTTATCAATGAGATGACCCAGCAGACGAACC
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CAACGCGATGTGGCAGCGTGAATACGCTGCACA
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	AGGAGCGAGTAGGCGGTGTTGTAGCGTGTCCCGTA
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CATGTCCAGCGTCCGGTAGCGCATGTTGAAATAG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	GCGTAGAAACTGTCCGAATTTCGACGTGGCGACTT
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	AAGACCTGCAAGCGGCGTCCGAAACTCCATTGTG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CTCCATTGGGCTGGATGATACATTGCATCATATC
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	ACGAGATGGAACAGCAGGGCGTGGCAACCTCCC
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CCGTTATCAATGAGATGACCCAGCAGACCAACCCG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	AATTCAGCAACAGTCCCATTAAATCACATTAAAAC
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	AACGCGCTCGGCGTCACGTCGGTACCCACGGCGCAA
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	GAACGTGGCGTGACCGTATGGAACAAACCGGAG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	AAGTCGGGTGGCCCATGGCGCGGTCTTGCTTCC
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	TCACCTCCTGTTACAATGCGGCTGAGGTTGACTT
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	AGATTAACGACCGAGGATACGGTCTGCCGATTG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	AGATTAACGACCGAGGATACGGTCTGCCGATTG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CACGTGAAACAAATCGCAACCGGGGAACGTAAAC
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CAGCGCTTCGGGCACGACGGATATTGATATGCCCG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CATCATATCCGGAGAGCATCTGGACACCGAGCATGGA
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	ATAAACAATAATATACCCCACGGCAGTAAGCCGTG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CCTTGCAGTCGAACCCAGCCAAGGACGGTGTATG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	ATCTGGAAGTAGATGATGACGATCAGGAGCCCGA
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	TCGCGGTGGCGGGAACAGCGAACACGAACAAGCGC
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	GCCACGCCGAACTGCATGGATGCGATCGCGCCCCGC
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CCCGGCCGGTTCGGCGGGCACGTCGAGGAAAGCTAC
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	GCATCCTCGAACAGCGCCGCCGCATCACCAACCT
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	TTATCCCCACAAACCAAATAAAAAAGCCCGAAAA
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CTCAGCGACCAGAAGGGCTTCTGCCCGCCGACCAC
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	TTTGAGGCGTAGGCAGTGGATTCCGCCATTCGTCA
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	TGGACGGCGAGGGCATGGCGAACCTGCTGACCGGCA
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	TAACCGTGGTGACCTCCGTGATCACGGCGATCA
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CGTATCGTGTACCGCAGCCGGGGTCGTGGTGTCTGG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	AGGGTCAATCGCAGGATCAGCCTGGGCAAGAACGTC
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	ACCCGACAGGCGAGATCCCACAGAGCGAGCCGCACC
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	GCCTCACGCGAGTGGAAGCCGGAGACCAGGAAGAG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CAAGAAGGAAAGTAAACGCATGAGCGGAACCCAAG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CGCCTTGACGGGCAGATCAAAGGGGATATGGCGCA
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	ATTTGTCCACGACCGATGATGTTTCCCGCCACC
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CCTGCTGATGGTGTCGAGGATGAGGTCCGCGAGGTC
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT

>NZ_CP053940|4|1|1183267-1186271|CRT
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	TTGCGTGGCCTTCCTCCGCCGACACCACGTCCCGG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	GCCGTGCTACGTCATTACAGTGATGGCAAACGT
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	ATCTACGGTGGGCGGCAGTCCGCGCCAACTGAACCG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CGATGATATGACGCAGAAAATATTGAACGCATA
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CTGTTATCAATGAGATGACCCAGCAGACGAACC
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CAACGCGATGTGGCAGCGTGAATACGCTGCACA
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	AGGAGCGAGTAGGCGGTGTTGTAGCGTGTCCCGTA
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CATGTCCAGCGTCCGGTAGCGCATGTTGAAATAG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	GCGTAGAAACTGTCCGAATTTCGACGTGGCGACTT
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	AAGACCTGCAAGCGGCGTCCGAAACTCCATTGTG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CTCCATTGGGCTGGATGATACATTGCATCATATC
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	ACGAGATGGAACAGCAGGGCGTGGCAACCTCCC
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CCGTTATCAATGAGATGACCCAGCAGACCAACCCG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	AATTCAGCAACAGTCCCATTAAATCACATTAAAAC
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	AACGCGCTCGGCGTCACGTCGGTACCCACGGCGCAA
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	GAACGTGGCGTGACCGTATGGAACAAACCGGAG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	AAGTCGGGTGGCCCATGGCGCGGTCTTGCTTCC
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	TCACCTCCTGTTACAATGCGGCTGAGGTTGACTT
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	AGATTAACGACCGAGGATACGGTCTGCCGATTG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	AGATTAACGACCGAGGATACGGTCTGCCGATTG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CACGTGAAACAAATCGCAACCGGGGAACGTAAAC
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CAGCGCTTCGGGCACGACGGATATTGATATGCCCG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CATCATATCCGGAGAGCATCTGGACACCGAGCATGGA
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	ATAAACAATAATATACCCCACGGCAGTAAGCCGTG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CCTTGCAGTCGAACCCAGCCAAGGACGGTGTATG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	ATCTGGAAGTAGATGATGACGATCAGGAGCCCGA
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	TCGCGGTGGCGGGAACAGCGAACACGAACAAGCGC
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	GCCACGCCGAACTGCATGGATGCGATCGCGCCCCGC
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CCCGGCCGGTTCGGCGGGCACGTCGAGGAAAGCTAC
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	GCATCCTCGAACAGCGCCGCCGCATCACCAACCT
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	TTATCCCCACAAACCAAATAAAAAAGCCCGAAAA
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CTCAGCGACCAGAAGGGCTTCTGCCCGCCGACCAC
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	TTTGAGGCGTAGGCAGTGGATTCCGCCATTCGTCA
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	TGGACGGCGAGGGCATGGCGAACCTGCTGACCGGCA
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	TAACCGTGGTGACCTCCGTGATCACGGCGATCA
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CGTATCGTGTACCGCAGCCGGGGTCGTGGTGTCTGG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	AGGGTCAATCGCAGGATCAGCCTGGGCAAGAACGTC
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	ACCCGACAGGCGAGATCCCACAGAGCGAGCCGCACC
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	GCCTCACGCGAGTGGAAGCCGGAGACCAGGAAGAG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CAAGAAGGAAAGTAAACGCATGAGCGGAACCCAAG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CGCCTTGACGGGCAGATCAAAGGGGATATGGCGCA
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	ATTTGTCCACGACCGATGATGTTTCCCGCCACC
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CCTGCTGATGGTGTCGAGGATGAGGTCCGCGAGGTC
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	TTTGGAGTGCCTGAGCGTGGATTTCGGTCTGGCGA
GTCGCTCCCTGTTTTTAGTCAAGTCGGTGTTTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053940.1\|WP_014484100.1\|1176821_1178780_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|378245
NZ_CP053940.1\|WP_014484097.1\|1180364_1181396_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP053940.1\|WP_014483515.1\|1192468_1193689_-\|methionine-adenosyltransferase	unknown	unknown	gnl\|CDD\|235374
NZ_CP053940.1\|WP_014484098.1\|1179673_1180363_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|273040
NZ_CP053940.1\|WP_025341856.1\|1172322_1172679_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053940.1\|WP_074525147.1\|1194425_1196288_+\|dihydroxy-acid-dehydratase	unknown	unknown	gnl\|CDD\|237104
NZ_CP053940.1\|WP_025341852.1\|1188083_1188845_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|366760
NZ_CP053940.1\|WP_003833383.1\|1181452_1181743_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP053940.1\|WP_042994273.1\|1168742_1172051_+\|mupirocin-resistant-isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235681
NZ_CP053940.1\|WP_003830263.1\|1201813_1202509_+\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP053940.1\|WP_014484099.1\|1178783_1179635_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|187820
NZ_CP053940.1\|WP_021649099.1\|1197734_1198439_-\|HAD-family-phosphatase	unknown	unknown	gnl\|CDD\|319790
NZ_CP053940.1\|WP_014484096.1\|1182208_1182442_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053940.1\|WP_021649096.1\|1201040_1201763_-\|phosphoserine-phosphatase-SerB	unknown	unknown	gnl\|CDD\|319803
NZ_CP053940.1\|WP_025341850.1\|1198683_1200993_-\|primosomal-protein-N'	unknown	unknown	gnl\|CDD\|237844
NZ_CP053940.1\|WP_021649100.1\|1196582_1197596_-\|methionyl-tRNA-formyltransferase	unknown	unknown	gnl\|CDD\|234567
NZ_CP053940.1\|WP_129559014.1\|1172769_1172991_+\|transposase	unknown	unknown	gnl\|CDD\|376574
NZ_CP053940.1\|WP_080685065.1\|1188841_1190299_-\|IS21-family-transposase	unknown	unknown	gnl\|CDD\|226950
NZ_CP053940.1\|WP_015439067.1\|1176114_1176819_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187782
NZ_CP053940.1\|WP_003830251.1\|1193974_1194259_-\|DNA-directed-RNA-polymerase-subunit-omega	unknown	unknown	gnl\|CDD\|234744

Protein	Function_ID	Function_description	E-value
NZ_CP053940.1\|WP_014484100.1\|1176821_1178780_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	7.20591e-90
NZ_CP053940.1\|WP_014484097.1\|1180364_1181396_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	3.77456e-177
NZ_CP053940.1\|WP_042994273.1\|1168742_1172051_+\|mupirocin-resistant-isoleucine--tRNA-ligase	gnl\|CDD\|235681	PRK06039, ileS, isoleucyl-tRNA synthetase; Reviewed.	0
NZ_CP053940.1\|WP_014484098.1\|1179673_1180363_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	1.07596e-31
NZ_CP053940.1\|WP_074525147.1\|1194425_1196288_+\|dihydroxy-acid-dehydratase	gnl\|CDD\|237104	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional.	0
NZ_CP053940.1\|WP_025341852.1\|1188083_1188845_-\|ATP-binding-protein	gnl\|CDD\|366760	pfam01695, IstB_IS21, IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.	1.5351e-54
NZ_CP053940.1\|WP_003833383.1\|1181452_1181743_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	7.39737e-29
NZ_CP053940.1\|WP_014483515.1\|1192468_1193689_-\|methionine-adenosyltransferase	gnl\|CDD\|235374	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.	0
NZ_CP053940.1\|WP_003830263.1\|1201813_1202509_+\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	8.02095e-44
NZ_CP053940.1\|WP_021649099.1\|1197734_1198439_-\|HAD-family-phosphatase	gnl\|CDD\|319790	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive. This family includes the N-terminal phosphatase domain of human soluble epoxide hydrolase (sEH). sEH is a bifunctional enzyme with two distinct enzyme activities, the C-terminal domain has epoxide hydrolysis activity and the N-terminal domain (Ntermphos), which belongs to this family, has lipid phosphatase activity. The latter prefers mono-phosphate esters, and lysophosphatidic acids (LPAs) are the best natural substrates found to date. In addition this family includes Gallus gallus sEH and Xenopus sEH which appears to lack phosphatase activity, and Escherichia coli YihX/HAD4 which selectively hydrolyzes alpha-Glucose-1-P, phosphatase, has significant phosphatase activity against pyridoxal phosphate, and has low beta phosphoglucomutase activity. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	6.4378e-46
NZ_CP053940.1\|WP_014484099.1\|1178783_1179635_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|187820	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Csd2 family.	2.89068e-107
NZ_CP053940.1\|WP_021649096.1\|1201040_1201763_-\|phosphoserine-phosphatase-SerB	gnl\|CDD\|319803	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p. This family includes Methanococcus jannaschii PSP, and Saccharomyces cerevisiae phosphoserine phosphatase SER2p, EC 3.1.3.3, which participates in a pathway whereby serine and glycine are synthesized from the glycolytic intermediate 3-phosphoglycerate; phosphoserine phosphatase catalyzes the hydrolysis of phospho-L-serine to L-serine and inorganic phosphate, the third reaction in this pathway. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	5.03185e-100
NZ_CP053940.1\|WP_025341850.1\|1198683_1200993_-\|primosomal-protein-N'	gnl\|CDD\|237844	PRK14873, PRK14873, primosomal protein N'.	0
NZ_CP053940.1\|WP_021649100.1\|1196582_1197596_-\|methionyl-tRNA-formyltransferase	gnl\|CDD\|234567	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed.	2.33225e-126
NZ_CP053940.1\|WP_129559014.1\|1172769_1172991_+\|transposase	gnl\|CDD\|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	2.6509e-14
NZ_CP053940.1\|WP_080685065.1\|1188841_1190299_-\|IS21-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.9506e-19
NZ_CP053940.1\|WP_015439067.1\|1176114_1176819_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187782	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	1.78462e-83
NZ_CP053940.1\|WP_003830251.1\|1193974_1194259_-\|DNA-directed-RNA-polymerase-subunit-omega	gnl\|CDD\|234744	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed.	1.88678e-17

>NZ_CP053940.1|WP_014484096.1|1182208_1182442_+|hypothetical-protein
MTMVESLPTYSSAEAEARSKGDNLISMINVYLAGYAAAGMPVDVETTGKTLHALPADTVLRTDADFDAFEHEVLGDD
>NZ_CP053940.1|WP_003833383.1|1181452_1181743_+|CRISPR-associated-endonuclease-Cas2
MMVVVAYDVNTETPDGKRRLRSVAKTCMKYGQRVQNSVFECSVTPSDYLILKHDLAEIMDEMCDSLRYYNLGSKYASKIEHRGRQRHVPVDGVMML
>NZ_CP053940.1|WP_014484097.1|1180364_1181396_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MRQLLNTLYVTSEDVYLSLKNDNVIVQQGDNTLGRIPLRSLESIISFSYKGASPALMGKCSELGVGLSFFSPRGWYYCSILGEKNRNVLLRREQFRFADDESEALPFARSFIIGKIYNCRWVLERTKRDHALRVNSERIAAQSEKLRQSLANVRNCTSIDELRGVEGLAAKDYFFTFDNLILRDKDDFFFQQRSRRPPLDRANALLSFVYSLLTSDCIAALQGVGLDPYVGFLHTDRPGRASLALDLVEEFRPAIADRFVLTLINTGVIKPSQFEVRENGGVFLSEGGRKTVLAAWQKRKQETITHPFFGEKIPWGLVPHVQALLLNRAIRGDLDAYPPFMWK
>NZ_CP053940.1|WP_014484098.1|1179673_1180363_+|CRISPR-associated-protein-Cas4
MKEPTDYPEDDWLALSGLQHFAFCRRQWALIHIEQQWQDNYLTTAGSLEHDRAHDYSESETRGNLLIMRDLRVFSRRLGITGACDVVEFRQSDEGVPLHGRAGTWLPYPVEYKHGVPKQVDADRLQLCAEAMCLEEMLACSIPEGSLFYQQTKRRERVQFDESLRGQIVAMTSEMHDLFSRGHTPKVRPSKACRACSLSDICLPKIAKTRSAHQFIEESVQAGVEGVAG
>NZ_CP053940.1|WP_014484099.1|1178783_1179635_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MTSLQHKIDFVLTFAVENANPNGDPLNGNRPRTTAEGLGEMSDVAEKRKIRNRLQDAGERIFVQSTDRTDDGEKSLSDRWKAFTKTLSKEDQKDREALSYRACEQWIDVRSFGQVFAFKGKEKEGDASVSIPVRGPFTIQSAFSLEPIAIDDVQITKSVNGETTDTNKKSSDTMGMKHRVSGRAVYVTHGSISPQLAEKTGFTEKDAEKIKEALLTLFENDESSARPAGSMEVVNLAWFTHNSKAGQYSSAKVHRTAKVDEEGVITVDTTHIPGLHYEVLEGR
>NZ_CP053940.1|WP_014484100.1|1176821_1178780_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MSLWSSLLQTYDAVNSSAGITPLNEDVNKTLLPLYHTTLKTQLQVTLDENGYPTIKRDNADIEIIAPCTEQSMGRSGTVLPPHPLFDQLQYIDTNYDPVKHESYLSQLASWKGDNAKLNAIYQYLSQHSIIEEARAQGIGIDPKKDSKIGVRFAVHVRHGDYEPNVWADHAIRDLWIAHEEQVRHGASLGTDLFGETLYKPSTNFPKKIVNVNGNAKLISANDNTNFTFRGRFANRDEALSIDTLTSQKIHTTLRWLAANNGTLTGSQDIVIWAIDGHPTDNVFDPTGNSRDVAEQVDDRTDSEKLIDANVQTYANYAKQFGKLLRGYGNEKVLQQMQQHSRRIVVTIFDAATSGRLSVTFYRELSQNEYIESVLQWHEDAAWYLTCFDNKNSASTDDEAPRGSKKSSDKLKPIPYIGAPSFADIINCVYSTDDHSSDSYRRFAKYVKKQLVECMFSNAGLPASLLQPAFHKVIRPLSYDSLSVWQHDFEVACSMWKKYYIDQDKRLPLNERNNITMDLDEKRTDRDYLFGQLLALADNYEYRVLLRQSGGRTPDRTTNAVKLMNNFVAKPSTTWLTLRQQLNPYIISSTNGMFFQNEVDEVMSKFKEGDFESNKPLSSLFLLGYSHKRRQLIQRADAAKQLKEQNIENKGE
>NZ_CP053940.1|WP_015439067.1|1176114_1176819_+|type-I-C-CRISPR-associated-protein-Cas5
MEKHRNSIEYVIYGDYALFSEVATRTGGEKNSYQIPTYQALKGITESIYWKPTIVWVIDAVRVMNKIQTEGKGIRPIKMSGGNDLSYYTYLKKVKYQVLAHFEWNEQREDLRVDRNENKHHNIAKRSVNLGGRRDIFLGTRECQGYVEPCEFGSGEGFYDGYGDWQFGFEFHSFIYPDENPEHDFIAQFWRPIMHDGIIQFERPDSTQLDQRIIRRNQHVKDFIEGRNFSMAEE
>NZ_CP053940.1|WP_129559014.1|1172769_1172991_+|transposase
MEEFSRLGEKIDRRRFDILRTIRSGLSNARLEAVNNKIKTTIKIGYGYRNLGNLIALVMLKCGGLNLQLPGRQ
>NZ_CP053940.1|WP_025341856.1|1172322_1172679_+|hypothetical-protein
MPTISAGALKRMLGLPANVVAGVPRVEKDPRGGDVVIVPVRPYARDMDRCARCGERGRPYDRLGVRRWRHLDIGCARLLLEHAPRKVDCAEHGVTVAMVPWRDARARTRVTSSGKSHG
>NZ_CP053940.1|WP_042994273.1|1168742_1172051_+|mupirocin-resistant-isoleucine--tRNA-ligase
MSENVYPKVNEGGETAHVAPNPSFPQMEETVLNYWDKDDTFQKSVERNPSGDHSQNEFVFFDGPPFANGLPHYGHLLTGYAKDVIPRYQTMKGRKVNRVFGWDTHGLPAELEAQKELGIDSVDQIEKMGIDKFNDACRASVLKYTHEWQDYVHRQARWVDFEHGYKTLNIPYMESVMWAFKQLYDKGLAYQGYRVLPYCPKDQTPLSAHELRMDADVYQDRQDTTVSVAVKMRDEEDAYAVFWTTTPWTVPTNFAIVVGADIDYVEVRPTEGKFAGKKFYFGKPLLEHYTKELGENYEVVRELKGSELAGRRYYPVFPYFAGEKAETEGNVPGPNGYTIFTADYVDTVEGTGLVHQAPYGEDDMNTLNAHGVKSTDVLDAGCRFTSQCPEYEGMYVFDANLPILRNLRAGDGPLAEIPEDQRAILFQEKSYVHSYPHCWRCATPLIYKPVSSWFVSVTKIKPRLLELNQQINWIPENVKGGQFGKWLANARDWSISRNRFWGSPIPVWVSDDPKYPRVDVYGSLEELKADFGDYPRDKDGNVNMHRPWIDNLTRVNPDDPTGKSHMHRISDVLDCWFESGSMSFAQFHYPFENKEKFEQHFPADYIVEYIGQTRGWFYLLHVMATALFDRPAFKNVICHGIVLGSDGQKMSKHLRNYPDVNGVFDKYGSDAMRWFLMSSPILRGGNLIVTAEGIRDTVRQVMLPVWSSYYFFTLYANAANGGAGFDARQLRADEVAGLPQMDRYLLARTRRLVERVEKSLNEFAISDACDAVSDFIDVLTNWYIRNTRDRFWNEDATAFNTLYTVLEAFMRVLAPLAPMEAESVWRGLTGGESVHLADWPYVVDEKTGADTELGRVLVDDPVLVAAMEKVREVVSGTLSLRKSAKIRVRQPLAKLTVVAEDVDAVKAYDELLKSELNVKDIEFCTMEDAGSQGLKIVHELRVNARAAGPRLGKQVQFAIKASKSGDWSVNASGAPVVSTPSGDLELVEGEYELINRVEEENAAEAAASVSAALPTGGFVILDTALDDDLLAEGYARDAIRAVQDARKAADLDIADRISLVLTVPAADVAKVEQFKDLIAHETLATSFEVKEGAELAVEVAKA
>NZ_CP053940.1|WP_025341852.1|1188083_1188845_-|ATP-binding-protein
MNQKNGRTGPGPLRERARSLFISQATIDETLEWATPRQLDAIDRMLATELANREASKRARLMRQARFPVTKSLDGYDFANVRLPDGYTKEQLTGLDFAAKAQDLVFYGKTGRGKTHLATALGMLAIEQGRSVRFRQTAELVLQLGKAKRDGALDSLLRDLARADLIILDEFGYVPFDIDGARLLYQIIAGSYERRSIIFTTNIEFSKWGTIFADDKLAAAIIDRIVHHGRLIEFTGPSRRVSQALMFGKTDNQ
>NZ_CP053940.1|WP_080685065.1|1188841_1190299_-|IS21-family-transposase
MPQIQSIRSRRRNGESIASIARSERVSEPTVRKYLRVDGLSARPPVRRRRGSVIDEWLPMIEGMLAEDRETWRKQRHTATRIHERLRDEYGAGVSLSTVTRTVARLRREAAAEREAGFLDLSWHPGECQADFGQVDVRYRGVVTRMRHFVLDFPYSNIGPSRLMPGENAECTCQALRNLFEWLGGVPERIVYDNAAGVGRKRFDRIRLTRLFQAFQAHYGFEYTFRNPYSGHEKGGVEARVGAVRRRLFVPVPGVWNLDSFNLRLPGRCLGLGDKDHYRKGESQTGLFDEDRKALLPLPAKPFDVVTWTRMKADKYGNITVQGRHRYAAGPEHAGHEMIVGLRALEVEILDAEGKRVITHPRSYGDKPTDSGDPSSQLGLLCDRPAAWRNSRVRDAMPDPLREWIDAQDEATRRDSLRALLHADGESGWRAAVAGMLEILESTGGTDRAGVCLAAARHASGLGPVAYDDPVDLSEYDIAYTKEDE
>NZ_CP053940.1|WP_014483515.1|1192468_1193689_-|methionine-adenosyltransferase
MTEEHRLISAESVTEGHPDKVCDQISDAILDDLLAQDPSSHVAVETSAATGVFLVFGEVTSEGYCDVQSKVRETLRNIGYTSSEVGLDADSCGVVVAITEQSAEINQGVARLTGAQETAASREERYEAQGAGDQGVMFGYATDETPTLMPLPIYLAHRLAFRLTEVRKSGEVPHLRPDGKTQVTIEYDDNDQPVRLDTVLISTQHDPEVTQDWLAVELKKHVIDPVLDEVLGSKVPHDNYRQLVNPTGSFILGGPAADAGLTGRKIIVDTYGGAAHHGGGAFSGKDPSKVDRSAAYATRWVAKNIVAAGLAHKVEIQVAYAIGVADPVSINVETFGTEQGVTRGQIAAAVRKVFDLRPAAIIDELDLKRPIYLKTAAYGHFGRMDVEFPWEKTDKVEELKAAIAGE
>NZ_CP053940.1|WP_003830251.1|1193974_1194259_-|DNA-directed-RNA-polymerase-subunit-omega
MAFGTDPTPDGLANPPIDDLMQHADSKYALAIFAAKRARQINSYFTQLNEGLLQNVGPLVEYQNNEKPLSIAFREIDEGLLEETLGEDDTNEGN
>NZ_CP053940.1|WP_074525147.1|1194425_1196288_+|dihydroxy-acid-dehydratase
MTEMRSAKIMSGRVFAGARALYRAAGVSGDDMGKKPIIAIANSFDEFLPGHVHLNKVGRIVSEAIREAGGIPREFNTMAVDDGIAMGHTGMLYSLPSRDIIADTVEYQCNAHCADALICIPNCDKVVPGMLMAALRLNIPTVFVSGGPMEAGTTVLADGTVKSTDLIDVMYATADDSVSDEELLNYEKTVCPTCGSCAGMFTANSMNCLTEAIGLALPGNGTILASHSYRKDLFKRAAQQVVKIAHQYYDDSDDSVLPRSIATKEAFENAMTMDVAMGGSTNTVLHILAMAQSADVDFTLDDIERISHTVPCICKASPSGKWEISDVHRAGGITGILGELERAGKLHTNVHSIDYPTLEAKLADWDIMRPTCTEEAKQMYKAAPGHIISPEPWTHTTLFDSLDRDRVNGAIHDIDHPEIHEGGLAVLRGNLAPDGCVVKTAGVPPEIWKFRGPALVVDSQEQAIEVILNDTLKPGMALVIRYEGPKGGPGMQEMLYPTSFVKGKGIGKQVAMLTDGRYSGGSSGLAIGHMAPEAANKGPVALIKNGDIIDIDIEARSVNVELTDEQLDERRRELEAGDGYVAHRDRHVSQALKAYAAFARSADKGATRDPELINKLSGLA
>NZ_CP053940.1|WP_021649100.1|1196582_1197596_-|methionyl-tRNA-formyltransferase
MLKLVFAGTPDVAVPSLQAFAADSRFEVVGVITRPDAPTGRGRKLTPSPVKAAAVELGLTVIDAKPRSPEFMEALNGLHADIAAVIAYGNILPKSVLDAVPMGWYNLHFSNLPKWRGAAPAQRAIWNGDPTTGADVFKVGEGLDDGPIIASLTVELTGRETSGELLTRLAEEGAPMYVDALAAVGDGTAIFTPQPAEGLEYAHKITVEDARINWADPAETIDRQIRACTPHPGAWTELFAEGLIADSGEANEESADLTTAVKPLTLHILAAQPADQTNPNTPIDLDPGELKVGKKNVWAGTGTGTLELTQVKAQGKKAMRAADWARGAHLSPTACVK
>NZ_CP053940.1|WP_021649099.1|1197734_1198439_-|HAD-family-phosphatase
MKGWPGEPDMDYNVLVADGEAATNAGKPITDVIFDFGNVLIYWDPAAVLIPRYSQKTIDAFLDNDISGFYDVNDLMDGGTSTEEAIAIMRERKGDKWADILDYYIKNFRDSLTGIVPGARVLVDDLKAAGIGVWGLSNWEASLFHVAEEQCDILQKLDGKLVSGFVKLRKPHKEIYDAALKEFGIKADGALFIDDKAMNIVGSNDAGIRGVRFQNPVKLRELLIANGVNIPDVQ
>NZ_CP053940.1|WP_025341850.1|1198683_1200993_-|primosomal-protein-N'
MTTSDAQQLTLDGLAPRKRRKRAPAEHTPAEHDPIAQVVLDVQALHLGQTFDYFIDEKDSDAAQPGVLVRVRFGGQRVGGVIWSRTSTSDTPRSSIRYIERVLSPDALVPASMREDIGLIANAYGGTRANILRFAVPPRVAKVEAEQRLTASFRRPVGGSLPDNVQGGFAGRGTLPDGTHPSGSSFEVADSVSEGAAQAYRRIAANYGEANVLNDALHGQRFQSFVFDSLPGAQEWQRNMAWMVATSLSAGKSAVVELPTMREVEDLLPVLRNYGLKPFSPTPSGGWIGDVAVLNAQMPAADRYRAYLAVALGQVKVIIGTRAVMYAPVEGPALFAILEDAAYQNMDGMMPYPQARGVMRLRAKSHGGVFVAMANARTVQSQWENTGPGTVETPVSGYSTAIHPLASPLKDATPWVRWLNRDELARLADATIGARVPHTAVRALSKALESGPVLLSIPQDSTSEALSCAKCHRQARCAKCSGPLQLPADRSESAPRCQWCGAASIHWTCPGCGHERMRVVRVGAAGTAAELAGLFRSVPMVLSSKAQGLVRDVPCKPMIVIATPGFEPRVRPVSNERGAAGHEYRAVAILDAWTSLYALGVDARLDTLTAWMRAVSLCAPRSRGGQALILGETDPAIAQSLMMWDSRILASKDLDERMETGMPPTVAAACVWGRRDAVMTLMQRIGALGGDWAVCGELPGMLGPVPIAQPDTVDARELEATADRVKAVVRVPQSQRAELAIRLHRETARHVASREPGELRFRIDPKDLI
>NZ_CP053940.1|WP_021649096.1|1201040_1201763_-|phosphoserine-phosphatase-SerB
MTQEDVHFIDKSAESEVGALGGSADSVPTLAEPGLLVMDVDSTLIDEEVIDELGEAAGSGEEIAKVTERAMRGELEFCDALRARVALLEGLPVSVFDTVHDKLHFTKGALELIDTLHAHGWKVGVVSGGFHEVVDKLAAEGHIDYWIANRLEVADGRLTGKVLGEIVCKTVKLHALREWAKQLDIPMSQTVAVGDGANDIPMIQAASLGIAFCAKPKTQLAADEAINDRDLMHVLDYLRR
>NZ_CP053940.1|WP_003830263.1|1201813_1202509_+|DedA-family-protein
MELATALAANPTPICTTSEGGLIGTITEWLITLMETIGGVGVALAIALESVFPPIPSEVILPLAGFTAARGTLSLPGAIIWATIGSLLGAWTLYGISRWVGLHRINRAADKIPGVSRKDVSKANDWFTRYGTWSVLIGRVIPVVRSLISIPAGFNRMNFLQFTGWTLLGSAVWNTILVSAGYLLGDQWCSIQGALGVFEDVVIVAVVVVIVWFAVKKVRTVVRNRKAQHGE

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Crispr_ID: NZ_CP053940_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053940_5

1190455-1191433

TypeI

I-C

Consensus_repeat	Method
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	PILER-CR
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CRISPRCasFinder
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CRT

14 spacers

cas2,cas1,cas4,cas7,cas8c,cas5

The CRISPR arrays of NZ_CP053940_5

>merge|NZ_CP053940|5|1190455-1191433|PILER-CR,CRISPRCasFinder,CRT
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAATAACGCGTACGACAGGGAGACGAACCCGAAACCCGAGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATTGCACGACCGGGACATGAACGCCGCCCTGAACATGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATGCCAACGTGGGACGCATCCCCAACTTCGACAAGGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATAAACCGGGACGCAACCTCACCGCATGGCAGGCCGTGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATTACGCGTCAATGTACGGCAAAGGCGACGTGTATGTCGCTCCCCATCCGGGGAACGTGGATTGAAATTCGTCAAGCAGGGTCTTCAAAATCACACCCGGATGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATAGGTACAGCCAGTTGAACACGGCTCCCATCCCGTTGTCGCTCCCCATCCGGGGGGCGTGGATTGAAATTTCGAGTCGCAGGCCAACGGTGCGGAAATCTACTAGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATAGTGCTTTCCTGTCCTTGTCAGCAGGCATCGGACGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATGTCCACCCACTGGTCGATGGCGCCGTCCGAACCGGTCGATCCCCATCCGGGGAGCGTGGATTGAAATGTAAATCTCAGGTTGCGCGAAAACACATGTTTCGACGTCGATCCCCATCCGGGGAGCGTGGATTGAAATTGGCTCGCCCACAACTGGTACTAAGGAGCGGGACAGTCGCTCCCCATTCGGGGAGCGTGGATTGAAATCTGTACGGCAAGGCTCAGACCGGCAGCGAGGGCTGGTCGCTCCCCATCCGGGGAGCGTGGATTGAAATCAAGCCCCCATACCCCGCGCAGCCCTCAAATCCAGCGTCGCTCCCCATCTGGGGAGCGTGGGTTCCTAT

>NZ_CP053940|5|2|1190455-1191364|PILER-CR
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	AACGCGTACGACAGGGAGACGAACCCGAAACCCGA
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	TGCACGACCGGGACATGAACGCCGCCCTGAACAT
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	GCCAACGTGGGACGCATCCCCAACTTCGACAAG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	AAACCGGGACGCAACCTCACCGCATGGCAGGCCGT
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	TACGCGTCAATGTACGGCAAAGGCGACGTGTAT
GTCGCTCCCCATCCGGGGAACGTGGATTGAAAT	TCGTCAAGCAGGGTCTTCAAAATCACACCCGGAT
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	AGGTACAGCCAGTTGAACACGGCTCCCATCCCGTT
GTCGCTCCCCATCCGGGGGGCGTGGATTGAAAT	TTCGAGTCGCAGGCCAACGGTGCGGAAATCTACTA
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	AGTGCTTTCCTGTCCTTGTCAGCAGGCATCGGAC
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	GTCCACCCACTGGTCGATGGCGCCGTCCGAACCG
GTCGATCCCCATCCGGGGAGCGTGGATTGAAAT	GTAAATCTCAGGTTGCGCGAAAACACATGTTTCGAC
GTCGATCCCCATCCGGGGAGCGTGGATTGAAAT	TGGCTCGCCCACAACTGGTACTAAGGAGCGGGACA
GTCGCTCCCCATTCGGGGAGCGTGGATTGAAAT	CTGTACGGCAAGGCTCAGACCGGCAGCGAGGGCTG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT

>NZ_CP053940|5|5|1190455-1191433|CRISPRCasFinder
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	AACGCGTACGACAGGGAGACGAACCCGAAACCCGA
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	TGCACGACCGGGACATGAACGCCGCCCTGAACAT
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	GCCAACGTGGGACGCATCCCCAACTTCGACAAG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	AAACCGGGACGCAACCTCACCGCATGGCAGGCCGT
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	TACGCGTCAATGTACGGCAAAGGCGACGTGTAT
GTCGCTCCCCATCCGGGGAACGTGGATTGAAAT	TCGTCAAGCAGGGTCTTCAAAATCACACCCGGAT
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	AGGTACAGCCAGTTGAACACGGCTCCCATCCCGTT
GTCGCTCCCCATCCGGGGGGCGTGGATTGAAAT	TTCGAGTCGCAGGCCAACGGTGCGGAAATCTACTA
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	AGTGCTTTCCTGTCCTTGTCAGCAGGCATCGGAC
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	GTCCACCCACTGGTCGATGGCGCCGTCCGAACCG
GTCGATCCCCATCCGGGGAGCGTGGATTGAAAT	GTAAATCTCAGGTTGCGCGAAAACACATGTTTCGAC
GTCGATCCCCATCCGGGGAGCGTGGATTGAAAT	TGGCTCGCCCACAACTGGTACTAAGGAGCGGGACA
GTCGCTCCCCATTCGGGGAGCGTGGATTGAAAT	CTGTACGGCAAGGCTCAGACCGGCAGCGAGGGCTG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CAAGCCCCCATACCCCGCGCAGCCCTCAAATCCAGC
GTCGCTCCCCATCTGGGGAGCGTGGGTTCCTAT

>NZ_CP053940|5|2|1190455-1191433|CRT
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	AACGCGTACGACAGGGAGACGAACCCGAAACCCGA
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	TGCACGACCGGGACATGAACGCCGCCCTGAACAT
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	GCCAACGTGGGACGCATCCCCAACTTCGACAAG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	AAACCGGGACGCAACCTCACCGCATGGCAGGCCGT
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	TACGCGTCAATGTACGGCAAAGGCGACGTGTAT
GTCGCTCCCCATCCGGGGAACGTGGATTGAAAT	TCGTCAAGCAGGGTCTTCAAAATCACACCCGGAT
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	AGGTACAGCCAGTTGAACACGGCTCCCATCCCGTT
GTCGCTCCCCATCCGGGGGGCGTGGATTGAAAT	TTCGAGTCGCAGGCCAACGGTGCGGAAATCTACTA
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	AGTGCTTTCCTGTCCTTGTCAGCAGGCATCGGAC
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	GTCCACCCACTGGTCGATGGCGCCGTCCGAACCG
GTCGATCCCCATCCGGGGAGCGTGGATTGAAAT	GTAAATCTCAGGTTGCGCGAAAACACATGTTTCGAC
GTCGATCCCCATCCGGGGAGCGTGGATTGAAAT	TGGCTCGCCCACAACTGGTACTAAGGAGCGGGACA
GTCGCTCCCCATTCGGGGAGCGTGGATTGAAAT	CTGTACGGCAAGGCTCAGACCGGCAGCGAGGGCTG
GTCGCTCCCCATCCGGGGAGCGTGGATTGAAAT	CAAGCCCCCATACCCCGCGCAGCCCTCAAATCCAGC
GTCGCTCCCCATCTGGGGAGCGTGGGTTCCTAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053940.1\|WP_014484100.1\|1176821_1178780_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	pfam09709_cas8c_CAS-I-C	gnl\|CDD\|378245
NZ_CP053940.1\|WP_014484097.1\|1180364_1181396_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
NZ_CP053940.1\|WP_014483523.1\|1204196_1204910_-\|HAD-family-phosphatase	unknown	unknown	gnl\|CDD\|319790
NZ_CP053940.1\|WP_014484098.1\|1179673_1180363_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|273040
NZ_CP053940.1\|WP_074525147.1\|1194425_1196288_+\|dihydroxy-acid-dehydratase	unknown	unknown	gnl\|CDD\|237104
NZ_CP053940.1\|WP_025341852.1\|1188083_1188845_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|366760
NZ_CP053940.1\|WP_003833383.1\|1181452_1181743_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
NZ_CP053940.1\|WP_014483515.1\|1192468_1193689_-\|methionine-adenosyltransferase	unknown	unknown	gnl\|CDD\|235374
NZ_CP053940.1\|WP_003830263.1\|1201813_1202509_+\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP053940.1\|WP_014484099.1\|1178783_1179635_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|187820
NZ_CP053940.1\|WP_021649099.1\|1197734_1198439_-\|HAD-family-phosphatase	unknown	unknown	gnl\|CDD\|319790
NZ_CP053940.1\|WP_014484096.1\|1182208_1182442_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053940.1\|WP_021649096.1\|1201040_1201763_-\|phosphoserine-phosphatase-SerB	unknown	unknown	gnl\|CDD\|319803
NZ_CP053940.1\|WP_025341850.1\|1198683_1200993_-\|primosomal-protein-N'	unknown	unknown	gnl\|CDD\|237844
NZ_CP053940.1\|WP_021649100.1\|1196582_1197596_-\|methionyl-tRNA-formyltransferase	unknown	unknown	gnl\|CDD\|234567
NZ_CP053940.1\|WP_129559014.1\|1172769_1172991_+\|transposase	unknown	unknown	gnl\|CDD\|376574
NZ_CP053940.1\|WP_080685065.1\|1188841_1190299_-\|IS21-family-transposase	unknown	unknown	gnl\|CDD\|226950
NZ_CP053940.1\|WP_015439067.1\|1176114_1176819_+\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187782
NZ_CP053940.1\|WP_014483522.1\|1202562_1204137_+\|proteasome-ATPase	unknown	unknown	gnl\|CDD\|200312
NZ_CP053940.1\|WP_003830251.1\|1193974_1194259_-\|DNA-directed-RNA-polymerase-subunit-omega	unknown	unknown	gnl\|CDD\|234744

Protein	Function_ID	Function_description	E-value
NZ_CP053940.1\|WP_014484100.1\|1176821_1178780_+\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	7.20591e-90
NZ_CP053940.1\|WP_014484097.1\|1180364_1181396_+\|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	3.77456e-177
NZ_CP053940.1\|WP_014483523.1\|1204196_1204910_-\|HAD-family-phosphatase	gnl\|CDD\|319790	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive. This family includes the N-terminal phosphatase domain of human soluble epoxide hydrolase (sEH). sEH is a bifunctional enzyme with two distinct enzyme activities, the C-terminal domain has epoxide hydrolysis activity and the N-terminal domain (Ntermphos), which belongs to this family, has lipid phosphatase activity. The latter prefers mono-phosphate esters, and lysophosphatidic acids (LPAs) are the best natural substrates found to date. In addition this family includes Gallus gallus sEH and Xenopus sEH which appears to lack phosphatase activity, and Escherichia coli YihX/HAD4 which selectively hydrolyzes alpha-Glucose-1-P, phosphatase, has significant phosphatase activity against pyridoxal phosphate, and has low beta phosphoglucomutase activity. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.86359e-35
NZ_CP053940.1\|WP_014484098.1\|1179673_1180363_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	1.07596e-31
NZ_CP053940.1\|WP_074525147.1\|1194425_1196288_+\|dihydroxy-acid-dehydratase	gnl\|CDD\|237104	PRK12448, PRK12448, dihydroxy-acid dehydratase; Provisional.	0
NZ_CP053940.1\|WP_014484099.1\|1178783_1179635_+\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|187820	cd09689, Cas7_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas7. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas7 is a RAMP superfamily protein; Subunit of the Cascade complex; also known as Csd2 family.	2.89068e-107
NZ_CP053940.1\|WP_003833383.1\|1181452_1181743_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	7.39737e-29
NZ_CP053940.1\|WP_014483515.1\|1192468_1193689_-\|methionine-adenosyltransferase	gnl\|CDD\|235374	PRK05250, PRK05250, S-adenosylmethionine synthetase; Validated.	0
NZ_CP053940.1\|WP_003830263.1\|1201813_1202509_+\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	8.02095e-44
NZ_CP053940.1\|WP_021649099.1\|1197734_1198439_-\|HAD-family-phosphatase	gnl\|CDD\|319790	cd02603, HAD_sEH-N_like, N-terminal lipase phosphatase domain of human soluble epoxide hydrolase, Escherichia coli YihX/HAD4 alpha-D-glucose 1-phosphate phosphatase, and related domains, may be inactive. This family includes the N-terminal phosphatase domain of human soluble epoxide hydrolase (sEH). sEH is a bifunctional enzyme with two distinct enzyme activities, the C-terminal domain has epoxide hydrolysis activity and the N-terminal domain (Ntermphos), which belongs to this family, has lipid phosphatase activity. The latter prefers mono-phosphate esters, and lysophosphatidic acids (LPAs) are the best natural substrates found to date. In addition this family includes Gallus gallus sEH and Xenopus sEH which appears to lack phosphatase activity, and Escherichia coli YihX/HAD4 which selectively hydrolyzes alpha-Glucose-1-P, phosphatase, has significant phosphatase activity against pyridoxal phosphate, and has low beta phosphoglucomutase activity. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	6.4378e-46
NZ_CP053940.1\|WP_025341852.1\|1188083_1188845_-\|ATP-binding-protein	gnl\|CDD\|366760	pfam01695, IstB_IS21, IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.	1.5351e-54
NZ_CP053940.1\|WP_021649096.1\|1201040_1201763_-\|phosphoserine-phosphatase-SerB	gnl\|CDD\|319803	cd07500, HAD_PSP, phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p. This family includes Methanococcus jannaschii PSP, and Saccharomyces cerevisiae phosphoserine phosphatase SER2p, EC 3.1.3.3, which participates in a pathway whereby serine and glycine are synthesized from the glycolytic intermediate 3-phosphoglycerate; phosphoserine phosphatase catalyzes the hydrolysis of phospho-L-serine to L-serine and inorganic phosphate, the third reaction in this pathway. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	5.03185e-100
NZ_CP053940.1\|WP_025341850.1\|1198683_1200993_-\|primosomal-protein-N'	gnl\|CDD\|237844	PRK14873, PRK14873, primosomal protein N'.	0
NZ_CP053940.1\|WP_021649100.1\|1196582_1197596_-\|methionyl-tRNA-formyltransferase	gnl\|CDD\|234567	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed.	2.33225e-126
NZ_CP053940.1\|WP_129559014.1\|1172769_1172991_+\|transposase	gnl\|CDD\|376574	pfam01610, DDE_Tnp_ISL3, Transposase. Transposase proteins are necessary for efficient DNA transposition. Contains transposases for IS204, IS1001, IS1096 and IS1165.	2.6509e-14
NZ_CP053940.1\|WP_080685065.1\|1188841_1190299_-\|IS21-family-transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.9506e-19
NZ_CP053940.1\|WP_015439067.1\|1176114_1176819_+\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187782	cd09651, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	1.78462e-83
NZ_CP053940.1\|WP_014483522.1\|1202562_1204137_+\|proteasome-ATPase	gnl\|CDD\|200312	TIGR03689, pup_AAA, proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity. [Protein fate, Degradation of proteins, peptides, and glycopeptides].	0
NZ_CP053940.1\|WP_003830251.1\|1193974_1194259_-\|DNA-directed-RNA-polymerase-subunit-omega	gnl\|CDD\|234744	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed.	1.88678e-17

>NZ_CP053940.1|WP_080685065.1|1188841_1190299_-|IS21-family-transposase
MPQIQSIRSRRRNGESIASIARSERVSEPTVRKYLRVDGLSARPPVRRRRGSVIDEWLPMIEGMLAEDRETWRKQRHTATRIHERLRDEYGAGVSLSTVTRTVARLRREAAAEREAGFLDLSWHPGECQADFGQVDVRYRGVVTRMRHFVLDFPYSNIGPSRLMPGENAECTCQALRNLFEWLGGVPERIVYDNAAGVGRKRFDRIRLTRLFQAFQAHYGFEYTFRNPYSGHEKGGVEARVGAVRRRLFVPVPGVWNLDSFNLRLPGRCLGLGDKDHYRKGESQTGLFDEDRKALLPLPAKPFDVVTWTRMKADKYGNITVQGRHRYAAGPEHAGHEMIVGLRALEVEILDAEGKRVITHPRSYGDKPTDSGDPSSQLGLLCDRPAAWRNSRVRDAMPDPLREWIDAQDEATRRDSLRALLHADGESGWRAAVAGMLEILESTGGTDRAGVCLAAARHASGLGPVAYDDPVDLSEYDIAYTKEDE
>NZ_CP053940.1|WP_025341852.1|1188083_1188845_-|ATP-binding-protein
MNQKNGRTGPGPLRERARSLFISQATIDETLEWATPRQLDAIDRMLATELANREASKRARLMRQARFPVTKSLDGYDFANVRLPDGYTKEQLTGLDFAAKAQDLVFYGKTGRGKTHLATALGMLAIEQGRSVRFRQTAELVLQLGKAKRDGALDSLLRDLARADLIILDEFGYVPFDIDGARLLYQIIAGSYERRSIIFTTNIEFSKWGTIFADDKLAAAIIDRIVHHGRLIEFTGPSRRVSQALMFGKTDNQ
>NZ_CP053940.1|WP_014484096.1|1182208_1182442_+|hypothetical-protein
MTMVESLPTYSSAEAEARSKGDNLISMINVYLAGYAAAGMPVDVETTGKTLHALPADTVLRTDADFDAFEHEVLGDD
>NZ_CP053940.1|WP_003833383.1|1181452_1181743_+|CRISPR-associated-endonuclease-Cas2
MMVVVAYDVNTETPDGKRRLRSVAKTCMKYGQRVQNSVFECSVTPSDYLILKHDLAEIMDEMCDSLRYYNLGSKYASKIEHRGRQRHVPVDGVMML
>NZ_CP053940.1|WP_014484097.1|1180364_1181396_+|type-I-C-CRISPR-associated-endonuclease-Cas1
MRQLLNTLYVTSEDVYLSLKNDNVIVQQGDNTLGRIPLRSLESIISFSYKGASPALMGKCSELGVGLSFFSPRGWYYCSILGEKNRNVLLRREQFRFADDESEALPFARSFIIGKIYNCRWVLERTKRDHALRVNSERIAAQSEKLRQSLANVRNCTSIDELRGVEGLAAKDYFFTFDNLILRDKDDFFFQQRSRRPPLDRANALLSFVYSLLTSDCIAALQGVGLDPYVGFLHTDRPGRASLALDLVEEFRPAIADRFVLTLINTGVIKPSQFEVRENGGVFLSEGGRKTVLAAWQKRKQETITHPFFGEKIPWGLVPHVQALLLNRAIRGDLDAYPPFMWK
>NZ_CP053940.1|WP_014484098.1|1179673_1180363_+|CRISPR-associated-protein-Cas4
MKEPTDYPEDDWLALSGLQHFAFCRRQWALIHIEQQWQDNYLTTAGSLEHDRAHDYSESETRGNLLIMRDLRVFSRRLGITGACDVVEFRQSDEGVPLHGRAGTWLPYPVEYKHGVPKQVDADRLQLCAEAMCLEEMLACSIPEGSLFYQQTKRRERVQFDESLRGQIVAMTSEMHDLFSRGHTPKVRPSKACRACSLSDICLPKIAKTRSAHQFIEESVQAGVEGVAG
>NZ_CP053940.1|WP_014484099.1|1178783_1179635_+|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MTSLQHKIDFVLTFAVENANPNGDPLNGNRPRTTAEGLGEMSDVAEKRKIRNRLQDAGERIFVQSTDRTDDGEKSLSDRWKAFTKTLSKEDQKDREALSYRACEQWIDVRSFGQVFAFKGKEKEGDASVSIPVRGPFTIQSAFSLEPIAIDDVQITKSVNGETTDTNKKSSDTMGMKHRVSGRAVYVTHGSISPQLAEKTGFTEKDAEKIKEALLTLFENDESSARPAGSMEVVNLAWFTHNSKAGQYSSAKVHRTAKVDEEGVITVDTTHIPGLHYEVLEGR
>NZ_CP053940.1|WP_014484100.1|1176821_1178780_+|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MSLWSSLLQTYDAVNSSAGITPLNEDVNKTLLPLYHTTLKTQLQVTLDENGYPTIKRDNADIEIIAPCTEQSMGRSGTVLPPHPLFDQLQYIDTNYDPVKHESYLSQLASWKGDNAKLNAIYQYLSQHSIIEEARAQGIGIDPKKDSKIGVRFAVHVRHGDYEPNVWADHAIRDLWIAHEEQVRHGASLGTDLFGETLYKPSTNFPKKIVNVNGNAKLISANDNTNFTFRGRFANRDEALSIDTLTSQKIHTTLRWLAANNGTLTGSQDIVIWAIDGHPTDNVFDPTGNSRDVAEQVDDRTDSEKLIDANVQTYANYAKQFGKLLRGYGNEKVLQQMQQHSRRIVVTIFDAATSGRLSVTFYRELSQNEYIESVLQWHEDAAWYLTCFDNKNSASTDDEAPRGSKKSSDKLKPIPYIGAPSFADIINCVYSTDDHSSDSYRRFAKYVKKQLVECMFSNAGLPASLLQPAFHKVIRPLSYDSLSVWQHDFEVACSMWKKYYIDQDKRLPLNERNNITMDLDEKRTDRDYLFGQLLALADNYEYRVLLRQSGGRTPDRTTNAVKLMNNFVAKPSTTWLTLRQQLNPYIISSTNGMFFQNEVDEVMSKFKEGDFESNKPLSSLFLLGYSHKRRQLIQRADAAKQLKEQNIENKGE
>NZ_CP053940.1|WP_015439067.1|1176114_1176819_+|type-I-C-CRISPR-associated-protein-Cas5
MEKHRNSIEYVIYGDYALFSEVATRTGGEKNSYQIPTYQALKGITESIYWKPTIVWVIDAVRVMNKIQTEGKGIRPIKMSGGNDLSYYTYLKKVKYQVLAHFEWNEQREDLRVDRNENKHHNIAKRSVNLGGRRDIFLGTRECQGYVEPCEFGSGEGFYDGYGDWQFGFEFHSFIYPDENPEHDFIAQFWRPIMHDGIIQFERPDSTQLDQRIIRRNQHVKDFIEGRNFSMAEE
>NZ_CP053940.1|WP_129559014.1|1172769_1172991_+|transposase
MEEFSRLGEKIDRRRFDILRTIRSGLSNARLEAVNNKIKTTIKIGYGYRNLGNLIALVMLKCGGLNLQLPGRQ
>NZ_CP053940.1|WP_014483515.1|1192468_1193689_-|methionine-adenosyltransferase
MTEEHRLISAESVTEGHPDKVCDQISDAILDDLLAQDPSSHVAVETSAATGVFLVFGEVTSEGYCDVQSKVRETLRNIGYTSSEVGLDADSCGVVVAITEQSAEINQGVARLTGAQETAASREERYEAQGAGDQGVMFGYATDETPTLMPLPIYLAHRLAFRLTEVRKSGEVPHLRPDGKTQVTIEYDDNDQPVRLDTVLISTQHDPEVTQDWLAVELKKHVIDPVLDEVLGSKVPHDNYRQLVNPTGSFILGGPAADAGLTGRKIIVDTYGGAAHHGGGAFSGKDPSKVDRSAAYATRWVAKNIVAAGLAHKVEIQVAYAIGVADPVSINVETFGTEQGVTRGQIAAAVRKVFDLRPAAIIDELDLKRPIYLKTAAYGHFGRMDVEFPWEKTDKVEELKAAIAGE
>NZ_CP053940.1|WP_003830251.1|1193974_1194259_-|DNA-directed-RNA-polymerase-subunit-omega
MAFGTDPTPDGLANPPIDDLMQHADSKYALAIFAAKRARQINSYFTQLNEGLLQNVGPLVEYQNNEKPLSIAFREIDEGLLEETLGEDDTNEGN
>NZ_CP053940.1|WP_074525147.1|1194425_1196288_+|dihydroxy-acid-dehydratase
MTEMRSAKIMSGRVFAGARALYRAAGVSGDDMGKKPIIAIANSFDEFLPGHVHLNKVGRIVSEAIREAGGIPREFNTMAVDDGIAMGHTGMLYSLPSRDIIADTVEYQCNAHCADALICIPNCDKVVPGMLMAALRLNIPTVFVSGGPMEAGTTVLADGTVKSTDLIDVMYATADDSVSDEELLNYEKTVCPTCGSCAGMFTANSMNCLTEAIGLALPGNGTILASHSYRKDLFKRAAQQVVKIAHQYYDDSDDSVLPRSIATKEAFENAMTMDVAMGGSTNTVLHILAMAQSADVDFTLDDIERISHTVPCICKASPSGKWEISDVHRAGGITGILGELERAGKLHTNVHSIDYPTLEAKLADWDIMRPTCTEEAKQMYKAAPGHIISPEPWTHTTLFDSLDRDRVNGAIHDIDHPEIHEGGLAVLRGNLAPDGCVVKTAGVPPEIWKFRGPALVVDSQEQAIEVILNDTLKPGMALVIRYEGPKGGPGMQEMLYPTSFVKGKGIGKQVAMLTDGRYSGGSSGLAIGHMAPEAANKGPVALIKNGDIIDIDIEARSVNVELTDEQLDERRRELEAGDGYVAHRDRHVSQALKAYAAFARSADKGATRDPELINKLSGLA
>NZ_CP053940.1|WP_021649100.1|1196582_1197596_-|methionyl-tRNA-formyltransferase
MLKLVFAGTPDVAVPSLQAFAADSRFEVVGVITRPDAPTGRGRKLTPSPVKAAAVELGLTVIDAKPRSPEFMEALNGLHADIAAVIAYGNILPKSVLDAVPMGWYNLHFSNLPKWRGAAPAQRAIWNGDPTTGADVFKVGEGLDDGPIIASLTVELTGRETSGELLTRLAEEGAPMYVDALAAVGDGTAIFTPQPAEGLEYAHKITVEDARINWADPAETIDRQIRACTPHPGAWTELFAEGLIADSGEANEESADLTTAVKPLTLHILAAQPADQTNPNTPIDLDPGELKVGKKNVWAGTGTGTLELTQVKAQGKKAMRAADWARGAHLSPTACVK
>NZ_CP053940.1|WP_021649099.1|1197734_1198439_-|HAD-family-phosphatase
MKGWPGEPDMDYNVLVADGEAATNAGKPITDVIFDFGNVLIYWDPAAVLIPRYSQKTIDAFLDNDISGFYDVNDLMDGGTSTEEAIAIMRERKGDKWADILDYYIKNFRDSLTGIVPGARVLVDDLKAAGIGVWGLSNWEASLFHVAEEQCDILQKLDGKLVSGFVKLRKPHKEIYDAALKEFGIKADGALFIDDKAMNIVGSNDAGIRGVRFQNPVKLRELLIANGVNIPDVQ
>NZ_CP053940.1|WP_025341850.1|1198683_1200993_-|primosomal-protein-N'
MTTSDAQQLTLDGLAPRKRRKRAPAEHTPAEHDPIAQVVLDVQALHLGQTFDYFIDEKDSDAAQPGVLVRVRFGGQRVGGVIWSRTSTSDTPRSSIRYIERVLSPDALVPASMREDIGLIANAYGGTRANILRFAVPPRVAKVEAEQRLTASFRRPVGGSLPDNVQGGFAGRGTLPDGTHPSGSSFEVADSVSEGAAQAYRRIAANYGEANVLNDALHGQRFQSFVFDSLPGAQEWQRNMAWMVATSLSAGKSAVVELPTMREVEDLLPVLRNYGLKPFSPTPSGGWIGDVAVLNAQMPAADRYRAYLAVALGQVKVIIGTRAVMYAPVEGPALFAILEDAAYQNMDGMMPYPQARGVMRLRAKSHGGVFVAMANARTVQSQWENTGPGTVETPVSGYSTAIHPLASPLKDATPWVRWLNRDELARLADATIGARVPHTAVRALSKALESGPVLLSIPQDSTSEALSCAKCHRQARCAKCSGPLQLPADRSESAPRCQWCGAASIHWTCPGCGHERMRVVRVGAAGTAAELAGLFRSVPMVLSSKAQGLVRDVPCKPMIVIATPGFEPRVRPVSNERGAAGHEYRAVAILDAWTSLYALGVDARLDTLTAWMRAVSLCAPRSRGGQALILGETDPAIAQSLMMWDSRILASKDLDERMETGMPPTVAAACVWGRRDAVMTLMQRIGALGGDWAVCGELPGMLGPVPIAQPDTVDARELEATADRVKAVVRVPQSQRAELAIRLHRETARHVASREPGELRFRIDPKDLI
>NZ_CP053940.1|WP_021649096.1|1201040_1201763_-|phosphoserine-phosphatase-SerB
MTQEDVHFIDKSAESEVGALGGSADSVPTLAEPGLLVMDVDSTLIDEEVIDELGEAAGSGEEIAKVTERAMRGELEFCDALRARVALLEGLPVSVFDTVHDKLHFTKGALELIDTLHAHGWKVGVVSGGFHEVVDKLAAEGHIDYWIANRLEVADGRLTGKVLGEIVCKTVKLHALREWAKQLDIPMSQTVAVGDGANDIPMIQAASLGIAFCAKPKTQLAADEAINDRDLMHVLDYLRR
>NZ_CP053940.1|WP_003830263.1|1201813_1202509_+|DedA-family-protein
MELATALAANPTPICTTSEGGLIGTITEWLITLMETIGGVGVALAIALESVFPPIPSEVILPLAGFTAARGTLSLPGAIIWATIGSLLGAWTLYGISRWVGLHRINRAADKIPGVSRKDVSKANDWFTRYGTWSVLIGRVIPVVRSLISIPAGFNRMNFLQFTGWTLLGSAVWNTILVSAGYLLGDQWCSIQGALGVFEDVVIVAVVVVIVWFAVKKVRTVVRNRKAQHGE
>NZ_CP053940.1|WP_014483522.1|1202562_1204137_+|proteasome-ATPase
MGEAENLAELNDRLMAKNHALAEALNRAGKELTKAKSQLAQLAQPPLTFATMVKIDSTHTDEDGVQHASAEVISGTRRMIVPVAANVNASRLAAGSTVVLNEKLVLVEQRDADTVGQIRVVKQILDDGRLIVVDASGNPVLVRRSSALSLTAISQGDRIIVDPSVRLAIELLPNEGDRDLVLEETPDVTFADIGGLDSEIGRIRDAVQLPFQHRALFERYDLKPPKGVLLYGPPGNGKTMIAKAVANALCEGGCDMDGDGSINGREQQVKGVFLSVKGPELLNKYVGESERLIRLIFQRARERAAEGKLVVVFIDEMDSLLRTRGSGVSSDVETTIVPQFLSELDGVESLDNVMVIGASNRVDMIDPAVLRPGRLDVKIRIDRPSGEAAASIVRHYLTDDLPLEQGLDADALSRVLVRDIYTRSERRHLADVRDERGTWNALFLADVVSGASLKNIVDRAKTHAVKASIASGKDVALDATLLGRAVEDEFAETRDSLLDADPVQWARVNGFDAGRVTAIRAVGR
>NZ_CP053940.1|WP_014483523.1|1204196_1204910_-|HAD-family-phosphatase
MKGWPGESELNIPFNEVIAYDAAAAHARQPIANVIFDFGNVLVDWDPQALFMPRYSEKRIEDFLDNDISGFYDACDRMDAGASPAEGIAWIRETHGERWAEMLAYYFDNFLDSLTGTIPGMRVLVHDIKAAGLGVWGLSNWQRETIGEAENAYEILRMLNGRVISSEVHMRKPDTAIYMKALESFGIDAATTVFVDDRASNVIGANRAGIRCIRFRDERGLRETLIDAGVPIPAVAE

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Crispr_ID: NZ_CP053940_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053940_6

1635108-1635266

Orphan

Consensus_repeat	Method
ACTCCAAATCGCCCCTTTATACCTGCAATC	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP053940_6

>merge|NZ_CP053940|6|1635108-1635266|PILER-CR
ATCGGCTCTAACTTGCACCTTTATACCTGCAATCGCATAAATTGCCCTTATTACCTGCAATTTCCGCTCACAAGACGGCCCTTTATACCTGCAATCTATGGAGTTGAGCCCGAATAGCGCTGTTCAGATACTCCAAATCGCCCCTTTATACCTGCAAAC

>NZ_CP053940|6|3|1635108-1635266|PILER-CR
ATCGGCTCTAACTTGCACCTTTATACCTGCAATC	GCATAAATTGCCCTTATTACCTGCAATTTCCGCTCACAAG
ACGGCCCTTTATACCTGCAATCTATGGAGTTGAG	CCCGAATAGCGCTGTTCAGATACTCCAAATCGC
CCCTTTATACCTGCAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053940.1\|WP_003829348.1\|1630889_1631993_+\|transaldolase	unknown	unknown	gnl\|CDD\|235117
NZ_CP053940.1\|WP_003831182.1\|1644996_1647414_-\|excinuclease-ABC-subunit-UvrC	unknown	unknown	gnl\|CDD\|234792
NZ_CP053940.1\|WP_003829338.1\|1642815_1643781_-\|RNase-adapter-RapZ	unknown	unknown	gnl\|CDD\|235450
NZ_CP053940.1\|WP_042994084.1\|1632339_1633677_+\|branched-chain-amino-acid-transport-system-II-carrier-protein	unknown	unknown	gnl\|CDD\|283235
NZ_CP053940.1\|WP_014483754.1\|1643780_1644761_-\|shikimate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|234703
NZ_CP053940.1\|WP_003829353.1\|1624183_1625068_-\|undecaprenyl-diphosphate-phosphatase	unknown	unknown	gnl\|CDD\|237134
NZ_CP053940.1\|WP_003831847.1\|1638036_1638987_-\|L-lactate-dehydrogenase	unknown	unknown	gnl\|CDD\|133427
NZ_CP053940.1\|WP_025262981.1\|1620344_1622378_-\|threonine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237050
NZ_CP053940.1\|WP_025262979.1\|1625218_1626010_+\|fructosamine-kinase-family-protein	unknown	unknown	gnl\|CDD\|225547
NZ_CP053940.1\|WP_014483749.1\|1628707_1630816_+\|transketolase	unknown	unknown	gnl\|CDD\|223100
NZ_CP053940.1\|WP_003829346.1\|1633849_1635034_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053940.1\|WP_014483752.1\|1640344_1641550_-\|phosphoglycerate-kinase	unknown	unknown	gnl\|CDD\|234613
NZ_CP053940.1\|WP_003829342.1\|1639078_1639327_-\|preprotein-translocase-subunit-SecG	unknown	unknown	gnl\|CDD\|235881
NZ_CP053940.1\|WP_003829339.1\|1641708_1642659_-\|DNA-binding-protein-WhiA	unknown	unknown	gnl\|CDD\|273194
NZ_CP053940.1\|WP_025262978.1\|1627349_1628447_-\|heat-inducible-transcriptional-repressor-HrcA	unknown	unknown	gnl\|CDD\|234621
NZ_CP053940.1\|WP_003829351.1\|1626149_1627295_-\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|237654
NZ_CP053940.1\|WP_003831846.1\|1637188_1638040_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|369792
NZ_CP053940.1\|WP_015438800.1\|1639390_1640194_-\|triose-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234589
NZ_CP053940.1\|WP_029575616.1\|1635534_1636767_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|237361
NZ_CP053940.1\|WP_025262980.1\|1623199_1624033_+\|PAC2-family-protein	unknown	unknown	gnl\|CDD\|378251

Protein	Function_ID	Function_description	E-value
NZ_CP053940.1\|WP_003829348.1\|1630889_1631993_+\|transaldolase	gnl\|CDD\|235117	PRK03343, PRK03343, transaldolase; Validated.	0
NZ_CP053940.1\|WP_003831182.1\|1644996_1647414_-\|excinuclease-ABC-subunit-UvrC	gnl\|CDD\|234792	PRK00558, uvrC, excinuclease ABC subunit UvrC.	1.34394e-136
NZ_CP053940.1\|WP_003829338.1\|1642815_1643781_-\|RNase-adapter-RapZ	gnl\|CDD\|235450	PRK05416, PRK05416, RNase adapter RapZ.	3.59791e-156
NZ_CP053940.1\|WP_042994084.1\|1632339_1633677_+\|branched-chain-amino-acid-transport-system-II-carrier-protein	gnl\|CDD\|283235	pfam05525, Branch_AA_trans, Branched-chain amino acid transport protein. This family consists of several bacterial branched-chain amino acid transport proteins which are responsible for the transport of leucine, isoleucine and valine via proton motive force.	5.25465e-125
NZ_CP053940.1\|WP_014483754.1\|1643780_1644761_-\|shikimate-5-dehydrogenase	gnl\|CDD\|234703	PRK00258, aroE, shikimate 5-dehydrogenase; Reviewed.	2.49129e-50
NZ_CP053940.1\|WP_003829353.1\|1624183_1625068_-\|undecaprenyl-diphosphate-phosphatase	gnl\|CDD\|237134	PRK12554, PRK12554, undecaprenyl pyrophosphate phosphatase; Reviewed.	2.13357e-124
NZ_CP053940.1\|WP_003831847.1\|1638036_1638987_-\|L-lactate-dehydrogenase	gnl\|CDD\|133427	cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	2.30345e-157
NZ_CP053940.1\|WP_025262981.1\|1620344_1622378_-\|threonine--tRNA-ligase	gnl\|CDD\|237050	PRK12305, thrS, threonyl-tRNA synthetase; Reviewed.	0
NZ_CP053940.1\|WP_025262979.1\|1625218_1626010_+\|fructosamine-kinase-family-protein	gnl\|CDD\|225547	COG3001, COG3001, Uncharacterized protein conserved in bacteria [Function unknown].	2.58345e-43
NZ_CP053940.1\|WP_014483749.1\|1628707_1630816_+\|transketolase	gnl\|CDD\|223100	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism].	0
NZ_CP053940.1\|WP_014483752.1\|1640344_1641550_-\|phosphoglycerate-kinase	gnl\|CDD\|234613	PRK00073, pgk, phosphoglycerate kinase; Provisional.	0
NZ_CP053940.1\|WP_003829342.1\|1639078_1639327_-\|preprotein-translocase-subunit-SecG	gnl\|CDD\|235881	PRK06870, secG, preprotein translocase subunit SecG; Reviewed.	1.18957e-12
NZ_CP053940.1\|WP_003829339.1\|1641708_1642659_-\|DNA-binding-protein-WhiA	gnl\|CDD\|273194	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA. This family describes a DNA-binding protein widely conserved in Gram-positive bacteria, and occasionally occurring elsewhere, such as in Thermotoga. It is associated with cell division, and in sporulating organisms with sporulation. [Cellular processes, Cell division].	6.32855e-76
NZ_CP053940.1\|WP_025262978.1\|1627349_1628447_-\|heat-inducible-transcriptional-repressor-HrcA	gnl\|CDD\|234621	PRK00082, hrcA, heat-inducible transcription repressor; Provisional.	3.83161e-129
NZ_CP053940.1\|WP_003829351.1\|1626149_1627295_-\|molecular-chaperone-DnaJ	gnl\|CDD\|237654	PRK14278, PRK14278, chaperone protein DnaJ; Provisional.	2.005e-147
NZ_CP053940.1\|WP_003831846.1\|1637188_1638040_-\|HAD-family-hydrolase	gnl\|CDD\|369792	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase. This family contains haloacid dehalogenase-like hydrolase enzymes.	1.2049e-63
NZ_CP053940.1\|WP_015438800.1\|1639390_1640194_-\|triose-phosphate-isomerase	gnl\|CDD\|234589	PRK00042, tpiA, triosephosphate isomerase; Provisional.	7.9164e-125
NZ_CP053940.1\|WP_029575616.1\|1635534_1636767_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|237361	PRK13355, PRK13355, bifunctional HTH-domain containing protein/aminotransferase; Provisional.	0
NZ_CP053940.1\|WP_025262980.1\|1623199_1624033_+\|PAC2-family-protein	gnl\|CDD\|378251	pfam09754, PAC2, PAC2 family. This PAC2 (Proteasome assembly chaperone) family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 247 and 307 amino acids in length. These proteins function as a chaperone for the 26S proteasome. The 26S proteasome mediates ubiquitin-dependent proteolysis in eukaryotic cells. A number of studies including very recent ones have revealed that assembly of its 20S catalytic core particle is an ordered process that involves several conserved proteasome assembly chaperones (PACs). Two heterodimeric chaperones, PAC1-PAC2 and PAC3-PAC4, promote the assembly of rings composed of seven alpha subunits.	3.93744e-40

>NZ_CP053940.1|WP_003829346.1|1633849_1635034_+|hypothetical-protein
MNTSDRQIMETDRNRELGLIPAMVMAIIAALSGAGVSFAPLYERIWGGMMLHPNCPTIGRMTYYLSGQATGDYGACVTSPLWFLAVTALSVVAIICLTVAGVQGFARHRLRTVICVFLAAVAVAFILVLSANTKIVMLWAIHAATWLVYAILAAYSRNSTSIQQQHIADLTNLTGSDKSASERGGWTLVTRLLLVWQIGVMPVLVTEYSVSDEVNSTGGVTIACGLGLAAYALVHLISIDTPRDNVGSALPTIRDIRPVSVHKLFRVISINASAVSHVSVPLGLFWAVITFLTYSYGTGGHTDFCPALAATNNAGLIAFCTGSGPLIVLAVLLYVLPIFSLVSAIATVMATTGSMSNSHNSANSAGFQNKAAIFYLLLTAVLSATAFIIAFTLA
>NZ_CP053940.1|WP_042994084.1|1632339_1633677_+|branched-chain-amino-acid-transport-system-II-carrier-protein
MNKLVARQRLVMTFTFFSMFFGAGNLIFPPFVGAQAGSATMPAAIGFIVSAVGLPILGVLAVTFAGGFDKLAGRVSPKFALFLGVAIMLTIGPCFAIPRTATTSFEMMVAPFVPTSYDWLAQLIYSLVFFSLAFLFAQHPEKLSKVLGRFMGPLLLVLIAVLFIACLVHGIGTPAKPMGDYSTNQIARGFLDGYQTMDLLAALYFGIVISANIRAQQVDDESQVQKETAYAGLGTGVLLIVIYGALSYVGVVSGAIASIEPAKDTGATVLTNLTSSLFGTFGTAFLGVVFVIACLNVCTGLICTCATYFHTRFQTVAGRTLSYRTWQIIFTVFSFIVSNAGLSAIIKVSVPVLSALYPIAIVLVLLALTHKKLGARFPRVYFWTVLLVGIASFATCISSLAAVFGGSIGWLDAALAMLPLQQYQLGWVMPAIIGLAIGIADAPRR
>NZ_CP053940.1|WP_003829348.1|1630889_1631993_+|transaldolase
MTEATQRTSDNGVSIWLDDLSRSRIESGSLQDLIANKNVVGVTTNPSIFQKALSQVGPYDAQLKELGKVDVETAVRELTTTDVRNATDIFREIAEATDFVDGRVSIEVDPRLAHDTENTAKQAVELWEKVNRPNAMIKIPATLEGLPAITATLAKGISVNVTLIFSLERYEQVIDAFIEGIAQADANGHDLKHIGSVASFFVSRVDTAVDKLLEANGSDEAKALEGKAAVANARLAYELFEKKFAEDPRWADLAAKGAKVQRPLWASTGTKNAAYSDCKYVDELVAKHIVNTMPEKTLNALADHGNGAPSIEGTYEESHAVINKLAELGINLKDVTDKLEADGVAAFIKSWDSVLADVQSGIDRVNA
>NZ_CP053940.1|WP_014483749.1|1628707_1630816_+|transketolase
MTEFKETELDERAIKMAKALSADAVENAGSGHPGSPVSLAPIAYTLYQHFIKHDPNDPNWEGRDRFILSGGHASLTQYVQLYFSGYGLTLDDLKHFRGGADTRTPGHPEYGLTPGIEMTTGPLGQGFASAIGFAYGERFQRGLLDPETPKEDSPFYHKIWAICGEGDIEEGISGEAAALAANQKLGNVTVIFDANRIQIEGDTNLVLAEDVLKRFQAYGWYTDEFSFIQPDGSYKEDVEGLADVIAKAEAAAPDQPKLIKVDTLIAWPTPGKTNDPSSHGSKLGAEAVAGLKEVLGYDPAENFHVDEEALAHARKVAERGLEAHKEWDEKFDAWRKANPDKAALYDRIKAGELPEGFDKAIDDLEATFEVGKGVATRGASGSVLNAIAAVMPELWGGSADLGGSNKTDLKGAATFAPAECATKQWPVCNEFGRQLHFGVREFTMGCITNGILLGSHTRPFGGTFFMFSDYERSAVRLAALMEIPNLYVWTHDSVAVGEDGPTHQPVEHLASFRAIPQLEVVRPADAFETAEAYRYFFEKKNTLPAAMVLSRQGVPVLAETAAKAKDGVRKGAYVLVDTEGTPDVILMATGSEVQLAVKAAKTLAEEGVKARVVSVPSLEWFEEQDAEYKEAVLPAGVKARVSVEAGVAMPWYKYLGSYGKPVSIEQFGLQGDGAQNLIDLGITAEHVVEAAKASIAEVEAAK
>NZ_CP053940.1|WP_025262978.1|1627349_1628447_-|heat-inducible-transcriptional-repressor-HrcA
MTQSRRMLVLRAVVEDYIRSQEPVGSAALSKERDLGVSSATIRNDMAALEDEGYLIQPHTSAGRVPTEKGYRYFVDRLATVVPLSEAQRRGINSFLSGSVSLKDALQRSARLLSEITGQVAIVASPSLSKATLRHVELVPVAMSTLLAVVITDTGRVAQHGLTVSAMPTADDINRLSSAVNEQCNGQSLSSASETVRALGGGTGFETVREAADALADAFASMALDERANELYMSGTSHLAHSRSLTDLAPLFDALEEQVVLMKLMSNLSEEPSATGVGVSIGSESHTPELLHASVVSSGYGRSTSPVANDSERNETSPDQDSANEPIAFVGSIGPTHMDYAATMAAVRAVARYLTFFVSESGSGD
>NZ_CP053940.1|WP_003829351.1|1626149_1627295_-|molecular-chaperone-DnaJ
MADYYETLGIDRNASDDEIKKAYRKLSRKYHPDIAGPEFEDKFKEVNNAYDVLSNPDKRRMYDSGVDPNDPNAGAGGFSGAGFGDMGDVFSTFFGSAFGGGSQGPVPRTQPGRDALASASIDLKTAVFGGTAHVKINTFSLCQECGGSGAQGGAQPVTCPDCHGQGFMQKVVRTMLGQMMTSAPCERCEGHGTIIQNPCPSCMGHGRVRTTRNVGVTVPAGINDNARLRLANQGEVGEGGGAAGDLYIDIRIKADKQFTRDGDDLHCWIQVPMSWAVLGHDLSIDTFDGEQTVSIPAGCQPEDTVTLKGLGVTNIRNKDERGNLVAHVNVLIPTKLSESERGLIEQFAASHDSDATHVSQASRPQTGQKKGFFSKLKDALS
>NZ_CP053940.1|WP_025262979.1|1625218_1626010_+|fructosamine-kinase-family-protein
MSTYRKSRAFAPQRFFECEGRGLQWLGAAHAQGGPRVVQVYDWGKDYLDIERVNSSSPTAKAALEFGAALARMHDAGAEYFGSAPEGYDGTCYFGPLQDPVKMDTGEWTDPISYFADGRLRPMVELGVKRGELDQRDVDLTEKVIEALPDIMGRAAEDTPARIHGDLWSGNVMWTADSGQTEAVLIDPAAHGGHREEDLAMLHLFGMSYLTQITEGYQSVHPLKAGWQDRITLWQLYPIAGHCVFFGGGYVSEYRSMCLSLLK
>NZ_CP053940.1|WP_003829353.1|1624183_1625068_-|undecaprenyl-diphosphate-phosphatase
MNLFQAIVLGIVQALTEYLPVSSSAHIRIVGDLMLGSDPGAAFTAIIQIGTELAVILYFRHDIANILTHWFACLFGKNGKDWKARMGRGDNYATLGWNIIVGSIPIVILGFTLQNVIETTLRNLWITATVLLLFGILLWVVDARAKQTKTMDDMTYRDAFLFGLGQSMALIPGVSRSGGTITVGRALGYEREAAVRLSFLMAIPAVFGSGLLEAVKAVKDYKTDAMFPGWGPTLIAMVISFILGYIVIIGFLKFVSTFSYKAFAIYRIALAVVVALLLIAGVLPAIDPSVAAAA
>NZ_CP053940.1|WP_025262980.1|1623199_1624033_+|PAC2-family-protein
MSEDANTPSSVMIAAFEGWNDACQAASNVVRYLVKHYESREIRHIDCDAFYDYQVSRPMLCHVSGRTNLIWPQTTFYEIVLDEGHRIFAQIAPEPNYRWKEYCSQSLAIAEELDVDGVITLGSMFSDCPHTRPLPISVSDGNCQCEGDREYNGPVGIPTVLDIFAAERGMFHASMWVSIPQYLGSDECAAGTMRLLDALGHRIGFSFDVSELERKAEQWKSQASVLVRCNEQMQDYVTHLEHDYDLKQKADAEASLGAPQAEQLVKEAEAFLRQMGS
>NZ_CP053940.1|WP_025262981.1|1620344_1622378_-|threonine--tRNA-ligase
MAQATISITVNGEAKEVEATTTGVELFAEDKNIVAVKLNGENRDLYTPLADGDTVEPITLDSEDGLAIMRHSATHVMAQAVQEVYPNAKLGVGPVIKDGFYYDFQVDKPFTPEDLKDIEKRMQRIIKSSQSFRRRSVTEEEALKEEAGQPFKIELIEDKEAHLDPAAATEISEKELSFYDNVDRDGNVVWKDLCRGPHLPNTRYIKAFKIERSAAAYWRGSEKNPTMQRIYGTAWANKEDLKAYQTRLEEAAKRDHRKLGAEMDLFSFPDEIGPGLAVFHPKGAAVINAMEDYSREMHRKHHYSFVQTPHITKGGLYETSGHLHWYKDGMYPPMHLDEEYDADGNVTKPGFDYYLKPMNCPMHNLIFKSRQRSYRELPLRLFEFGTVYRYEKSGEVHGLTRVRGLTQDDSHIYCTREQMKDELTSLLTFVLNLLKDFGLSDFYLELSTKDPDKYVGSDEIWEEATRTLREVAEASHLDLVADPGGAAFYGPKISVQARDAIGRTWQVSTIQLDFNLPERFQLEYIAKDGTHQRPVMIHRALFGSIERFFAVLLEHYAGAFPAWLAPVQVLGVPVADEFAPHLAGFVKSLEDEMVRCEIDYSDDRFGKKIRNASKSKVPFILIVGEEDMNNNAVSFRFRDGSQLNGVPVDKAREQILAVIAKRVQVNSADDFNAAVAE
>NZ_CP053940.1|WP_029575616.1|1635534_1636767_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MPAARRRTFGKSHKLDDVLYDVRGPVVDEAARMEQAGTHVLKLNIGNPAPFGFRTPDEVVYDMAQQLPETEGYSASKGLFSARKAIMQYAQLKNIPNVTIEDIYTGNGVSELINLSMSALLDSGDEVLVPSPDYPLWTACVNLAGGTAVHYLCDEKSDWYPDIDDMRKKITDRTVAIVLINPNNPTGALYPKEVLQQIVDLAREHQLMIFSDEIYDRLVMDGLEHISIASMAPDLFCVTFSGLSKSHMIAGYRVGWMILSGNKAIAKDYIEGINMLTNMRICSNVPAQSIVQTALGGHQSVHDYIVPGGRIHDQRDYIYDALNSIPGITAVKPKAAFYIFPKIDIKKFNVHDDEQFALDLLHDKRILITRGGGFNWHEPDHFRIVYLPRIEVLKDATNKLSDFLSYYWQS
>NZ_CP053940.1|WP_003831846.1|1637188_1638040_-|HAD-family-hydrolase
MTTTIKTTTRPELLVADLDGTLLHDAEVFEDRFITQRSIDTIARAHDAGMKFAIATARPVSTGLQFAEKLPVDAVIYLNGALIDFDPANSDFDMLTSDSSQQSENHLIKIGFSSQRACEVCLFLLDRMPNLKIGIVMNDVRYTNFDVRAYWKTQAFRYTNFHDVPDGVADKITIFPEPEQWNELRALIPPDFDISISEGVMWMLMNPQANKEHALRLLCDRLDVPLEQTAAFGDDLIDINMMSESGRGVAVANANPKVLSIADEICPPNNEDGVAQWIESQLR
>NZ_CP053940.1|WP_003831847.1|1638036_1638987_-|L-lactate-dehydrogenase
MVTMNRNKVVIVGTGQVGATAAFSIVTHGLCNELVLIDHFAAKALGEARDLDDGSEFQDRHVKVRAGDYADCRDADIVVITVGRKPPANSNRMAELGFTVGLVGEVVDNVMASGFDGVIVMVSNPVDVMAWYAWKRSGLPRTQVLGTGTALDTSRLKTIIGEETGLDPRNVSGFVMGEHGDSQFTAWSTVSLGGKPFARFLADNQDRFASVSTAEVEEKTRTRGDEIVAAKGGTNFGIASTVAGIVQTILWDERRIVPVSTLLDGEYGEHGVFLGVPTELRANGANEIVELELSNEEMAKMHHSAELVRDHCKGLL
>NZ_CP053940.1|WP_003829342.1|1639078_1639327_-|preprotein-translocase-subunit-SecG
MTALKITLQVIVVLLSFVLTLLILMHKGKGGGLSDMFGGGLTQNAGTSGVAEKNLNRWTVIIALVWVALIIGLDMMTKFNLG
>NZ_CP053940.1|WP_015438800.1|1639390_1640194_-|triose-phosphate-isomerase
MASKRIPLVAGNWKMNFDHLEATYFVQKLVWLLRDAHFDFKRCEVALFPSFTSLRSVQVLVEADKLRLTYGAQSVSVTTQGAFTGDVSADMLAHLGCSYVIVGHSERRKYHPEDDANIVDQVRAVLAVGMQPILCVGESYEERRKGIELDFAVGQVRDVTRDLSDEEAAKLIVAYEPVWAIGTGMVATPQSAQDAANAIRDDLKTTFGQKVSDSVRILYGGSVTSKNAAELISQPDVDGFLIGGAALDVEELSKIARLALKTTSSRS
>NZ_CP053940.1|WP_014483752.1|1640344_1641550_-|phosphoglycerate-kinase
MKTLKDLGDLKGKRILVRADFNVPLDGTTITDDGRIKAALPTIKTLHEKGAKVILMAHLGRPKGKVVPELSLAPVAARLGELLGTNVPLAKDTYGEDAQAKVAAMNDGDVVLLENVRFNPEETSKDAAERAAYAKKIAALGEAFVSDGFGVVHRAQGSNYDVAADLPAAAGLLVEKEVKALSKATENPERPFTVVLGGSKVSDKLGVIENLLDKADRLVIGGGMVFTFLKAKGYEVGTSLLEEDQLDKVKGYIATAEKNGVELVLPTDVVVNAGFPAGDTPVAPEVVAADAIPSDKMGLDIGPDSQKLFHDKIVDSKTVVWNGPMGVFEVPEFAAGTKAVAQGLVDATAAGAFTIVGGGDSASAVRNLGFPEDGFSHISTGGGASLEFLEGKELPGLKVLE
>NZ_CP053940.1|WP_003829339.1|1641708_1642659_-|DNA-binding-protein-WhiA
MALLDDVKSELAAFEGDSPAAIKAQAAAMIRFGGGLRPVQNAYVIQAVFTSLDAAEWLQNTLKNVFGHEAEVNHLTRQTPNGPVETYVVLVTRNVVALALQTGLVDRRKQQVRGLPAEVVNGSIAQIKAAWRGAFMARGFLSDPGKASFLEIACPTEEAAMALCGVARRLGIQAKHRTLRSSERVTLKDPDAIERMLKLMGATRSAREWTGKRSDGEARGKANRLANFDDANMRRSAKAAAEASEKVQHAFEVLGDNIPDNLRQAGQLRIDHVDKSLEELGKIAEPQITKDAIAGRIRRLLQLAEKTEKARAAEGR
>NZ_CP053940.1|WP_003829338.1|1642815_1643781_-|RNase-adapter-RapZ
MSQPSSIHDSENQVDTHSDSAAADNQPNPADAFEVLLITGMSGAGRSRAADSVEDMGWYVVDNLPPKLLVPLVDMMTTSGSDSGVHKLAAVIDVRSRSYFDDLAAVLGHLDDLGVKTRILFLDANNDVLIKRYESVRRPHPLQHGNRLIDGILEERHLLENLKERADWVIDTSSLSIHQLSTKLYETMLGSGPTTVAVHIFSFGFKYGMPIDADFVADVRFLPNPFWVPSLRELTGADKPVADYVLSSKGAKEFLDSYERAIETAIEGYAQEDKHFVTIAIGCTGGQHRSVAMSEELARRLRAHGLNVTVSAREQHHRRSS
>NZ_CP053940.1|WP_014483754.1|1643780_1644761_-|shikimate-5-dehydrogenase
MANHRCAVLGKPIAHSLSPVLHNAAYRSLNLNDWLYDKHEVGEDDLDAFLKGLDSTWAGLSLTMPLKRTIQPYGTPENLWAKELRVANTAVFDWNDITDDPAWPHGKPAIKLYNTDVIGIQLAFDHINRELGNHHAGDRAGTALIIGNGNTATSALAACCMMPEIGHITVAARHPGRNAGLKPVAEKFINTHNPYDEIELSDTSALLNAARTATYVINTIPGLAANGIANVINTDSESHAEPYSGLLLDVVYNPRPTRLMQAWRSHGGRAIGGEEMLLYQALIQVLLMTGIWDDDPPSDADKRLQGTTTEDDHLEIAMRNALEEAL
>NZ_CP053940.1|WP_003831182.1|1644996_1647414_-|excinuclease-ABC-subunit-UvrC
MTNDIERHSPDEWRKTAAALMPESSSAGAEESAATAKVNANGAPLLGDSRDLFRPKTSDIPAKPGVYKWRDGQGRVIYVGKAKNLRNRLTNYFQPLYLLHPRTQTMVLTARSLEWTVVATELESLTLEYTWIKEFDPRFNVQFRDDKTYPYLAVSTGEQVPRVWVTRSRKRRDTRYFGPYAKVWELRHSLDRLLRTFPVRTCTTNVFHKAQLTGRPCLLASIGKCSAPCVNQIEADEHRRLCEQLVGVMTGRLGRPYIAQLTRDMKEASAELEFEKAARLRDQIQMLETVVQQNAVVFDQDVDADVFGFASDELEASVHAFYVRAGSIRGERNWSVERVEDIADTDLMADLLVQVYSDEAGNDHPQSAAPTAPASGGENAAVLPLAGAGTRSVTGGGAATISTSREAIGSTQTLTAMDAIARAQATRERNTRQETTGRVDLLAPIAPVPREIIVPIEPSRRAELESWLTDQRGGAVTIRVASRGDKKQLMDRANENANQALQRSKMSRISDMGARTQAMNDVAKALGLNQAPLRIECYDISNTVGGAFQVASMVVFEDAIAKKSEYRRFSIRGKDGQGAVDDLSALYETLTRRFKHGNIAGDSGESIDAEQRAAKAEQQQEQSASDVNGTSSTTPAAITDASSFADSSEVVQQNTNRHHFAYKPNLVVVDGGKPQVMAAAKALKDCGVDDVAVCGLAKRLEEVWVPDDDYPIILKRQSEGMYLLQRVRDESHRFAITYHRQQRRKGALRSALDEIPGIGESYQKRLLNHFGSVKAMRMASVEDFEQVKGVGHAKAEALYAALHDE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP053940_1	1.2\|108322\|25\|NZ_CP053940\|CRISPRCasFinder	108322-108346	25	NZ_AP022849	Bosea sp. ANAM02 plasmid pANAM02, complete sequence	158326-158350	4	0.84
NZ_CP053940_1	1.4\|108439\|25\|NZ_CP053940\|CRISPRCasFinder	108439-108463	25	NZ_AP022849	Bosea sp. ANAM02 plasmid pANAM02, complete sequence	158326-158350	4	0.84
NZ_CP053940_1	1.5\|108487\|34\|NZ_CP053940\|CRISPRCasFinder	108487-108520	34	NZ_CP007129	Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence	139667-139700	6	0.824
NZ_CP053940_5	5.2\|1190556\|34\|NZ_CP053940\|PILER-CR,CRISPRCasFinder,CRT	1190556-1190589	34	NC_017767	Thermus thermophilus HB8 plasmid pVV8, complete sequence	58815-58848	6	0.824
NZ_CP053940_1	1.5\|108487\|34\|NZ_CP053940\|CRISPRCasFinder	108487-108520	34	NC_016626	Burkholderia sp. YI23 plasmid byi_1p, complete sequence	1786163-1786196	7	0.794
NZ_CP053940_4	4.16\|1184309\|33\|NZ_CP053940\|PILER-CR,CRISPRCasFinder,CRT	1184309-1184341	33	MN856085	Myoviridae sp. isolate 322, complete genome	5771-5803	7	0.788
NZ_CP053940_5	5.6\|1190823\|34\|NZ_CP053940\|PILER-CR,CRISPRCasFinder,CRT	1190823-1190856	34	NZ_CP017887	Pseudomonas frederiksbergensis strain ERDD5:01 plasmid unnamed1, complete sequence	231055-231088	7	0.794
NZ_CP053940_5	5.10\|1191093\|34\|NZ_CP053940\|PILER-CR,CRISPRCasFinder,CRT	1191093-1191126	34	NC_011368	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence	1174959-1174992	7	0.794
NZ_CP053940_4	4.1\|1183300\|35\|NZ_CP053940\|PILER-CR,CRISPRCasFinder,CRT	1183300-1183334	35	NZ_CP007515	Rubrobacter radiotolerans strain RSPS-4 plasmid 1, complete sequence	26121-26155	8	0.771
NZ_CP053940_4	4.4\|1183503\|33\|NZ_CP053940\|PILER-CR,CRISPRCasFinder,CRT	1183503-1183535	33	NC_019909	Yersinia phage phiR1-RT complete genome	84221-84253	8	0.758
NZ_CP053940_4	4.4\|1183503\|33\|NZ_CP053940\|PILER-CR,CRISPRCasFinder,CRT	1183503-1183535	33	NC_028820	Yersinia phage vB_YenM_TG1, complete genome	76492-76524	8	0.758
NZ_CP053940_4	4.12\|1184038\|33\|NZ_CP053940\|PILER-CR,CRISPRCasFinder,CRT	1184038-1184070	33	NZ_CP029834	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed4, complete sequence	220380-220412	8	0.758
NZ_CP053940_4	4.29\|1185184\|36\|NZ_CP053940\|PILER-CR,CRISPRCasFinder,CRT	1185184-1185219	36	MN908687	Gordonia phage Skog, complete genome	10742-10777	8	0.778
NZ_CP053940_4	4.30\|1185253\|34\|NZ_CP053940\|PILER-CR,CRISPRCasFinder,CRT	1185253-1185286	34	NZ_CP049158	Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence	947-980	8	0.765
NZ_CP053940_4	4.30\|1185253\|34\|NZ_CP053940\|PILER-CR,CRISPRCasFinder,CRT	1185253-1185286	34	NZ_CP049318	Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence	947-980	8	0.765
NZ_CP053940_4	4.31\|1185320\|34\|NZ_CP053940\|PILER-CR,CRISPRCasFinder,CRT	1185320-1185353	34	NZ_CP034568	Vibrio parahaemolyticus strain D3112 plasmid p2, complete sequence	92066-92099	8	0.765
NZ_CP053940_4	4.31\|1185320\|34\|NZ_CP053940\|PILER-CR,CRISPRCasFinder,CRT	1185320-1185353	34	NZ_CP033143	Vibrio parahaemolyticus strain 160807 plasmid pVPWZ1, complete sequence	27712-27745	8	0.765
NZ_CP053940_4	4.31\|1185320\|34\|NZ_CP053940\|PILER-CR,CRISPRCasFinder,CRT	1185320-1185353	34	NZ_CP010885	Vibrio parahaemolyticus strain CHN25 plasmid P1, complete sequence	73144-73177	8	0.765
NZ_CP053940_4	4.31\|1185320\|34\|NZ_CP053940\|PILER-CR,CRISPRCasFinder,CRT	1185320-1185353	34	NZ_CP013250	Vibrio parahaemolyticus strain FORC_022 plasmid, complete sequence	25345-25378	8	0.765
NZ_CP053940_4	4.31\|1185320\|34\|NZ_CP053940\|PILER-CR,CRISPRCasFinder,CRT	1185320-1185353	34	NZ_CP034291	Vibrio parahaemolyticus strain 20140722001-1 plasmid pVPCZ2014-1, complete sequence	67777-67810	8	0.765
NZ_CP053940_4	4.31\|1185320\|34\|NZ_CP053940\|PILER-CR,CRISPRCasFinder,CRT	1185320-1185353	34	NZ_CP021149	Vibrio campbellii strain LA16-V1 plasmid pLA16-3, complete sequence	48573-48606	8	0.765
NZ_CP053940_4	4.31\|1185320\|34\|NZ_CP053940\|PILER-CR,CRISPRCasFinder,CRT	1185320-1185353	34	NZ_CP007006	Vibrio parahaemolyticus UCM-V493 plasmid pVPUCMV, complete sequence	19195-19228	8	0.765
NZ_CP053940_4	4.31\|1185320\|34\|NZ_CP053940\|PILER-CR,CRISPRCasFinder,CRT	1185320-1185353	34	NZ_CP034300	Vibrio parahaemolyticus strain 20160303005-1 plasmid pVPSD2016-1, complete sequence	33412-33445	8	0.765
NZ_CP053940_4	4.31\|1185320\|34\|NZ_CP053940\|PILER-CR,CRISPRCasFinder,CRT	1185320-1185353	34	NZ_CP034296	Vibrio parahaemolyticus strain 20140829008-1 plasmid pVPGD2014-1, complete sequence	33869-33902	8	0.765
NZ_CP053940_4	4.31\|1185320\|34\|NZ_CP053940\|PILER-CR,CRISPRCasFinder,CRT	1185320-1185353	34	NZ_CP019298	Vibrio campbellii strain LMB29 plasmid pLMB96, complete sequence	48036-48069	8	0.765
NZ_CP053940_4	4.31\|1185320\|34\|NZ_CP053940\|PILER-CR,CRISPRCasFinder,CRT	1185320-1185353	34	NZ_CP033139	Vibrio owensii strain 1700302 plasmid pVOWZ1, complete sequence	88964-88997	8	0.765
NZ_CP053940_5	5.2\|1190556\|34\|NZ_CP053940\|PILER-CR,CRISPRCasFinder,CRT	1190556-1190589	34	NZ_CP032348	Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence	456877-456910	8	0.765
NZ_CP053940_5	5.2\|1190556\|34\|NZ_CP053940\|PILER-CR,CRISPRCasFinder,CRT	1190556-1190589	34	NZ_CP012917	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence	623506-623539	8	0.765
NZ_CP053940_5	5.2\|1190556\|34\|NZ_CP053940\|PILER-CR,CRISPRCasFinder,CRT	1190556-1190589	34	NZ_CP032343	Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence	105074-105107	8	0.765
NZ_CP053940_1	1.5\|108487\|34\|NZ_CP053940\|CRISPRCasFinder	108487-108520	34	NC_016654	Rhodococcus phage REQ3, complete genome	8845-8878	9	0.735
NZ_CP053940_4	4.30\|1185253\|34\|NZ_CP053940\|PILER-CR,CRISPRCasFinder,CRT	1185253-1185286	34	NZ_CP013381	Burkholderia sp. Bp5365 strain MSMB43 plasmid pMSMB43, complete sequence	181373-181406	9	0.735
NZ_CP053940_4	4.30\|1185253\|34\|NZ_CP053940\|PILER-CR,CRISPRCasFinder,CRT	1185253-1185286	34	NZ_CP009547	Burkholderia sp. 2002721687 plasmid pBTU, complete sequence	241595-241628	9	0.735
NZ_CP053940_1	1.5\|108487\|34\|NZ_CP053940\|CRISPRCasFinder	108487-108520	34	CP006880	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence	671609-671642	10	0.706
NZ_CP053940_1	1.5\|108487\|34\|NZ_CP053940\|CRISPRCasFinder	108487-108520	34	NZ_CP017244	Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence	1652187-1652220	10	0.706
NZ_CP053940_4	4.12\|1184038\|33\|NZ_CP053940\|PILER-CR,CRISPRCasFinder,CRT	1184038-1184070	33	NZ_CP038639	Cupriavidus oxalaticus strain X32 plasmid unnamed4, complete sequence	336171-336203	10	0.697
NZ_CP053940_4	4.35\|1185592\|33\|NZ_CP053940\|PILER-CR,CRISPRCasFinder,CRT	1185592-1185624	33	NZ_CP006371	Aureimonas sp. AU20 plasmid pAU20d, complete sequence	39703-39735	10	0.697
NZ_CP053940_5	5.10\|1191093\|34\|NZ_CP053940\|PILER-CR,CRISPRCasFinder,CRT	1191093-1191126	34	NZ_CP053441	Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eE, complete sequence	149248-149281	10	0.706
NZ_CP053940_1	1.5\|108487\|34\|NZ_CP053940\|CRISPRCasFinder	108487-108520	34	NZ_CP048421	Sphingomonas insulae strain KCTC 12872 plasmid unnamed3, complete sequence	166344-166377	11	0.676
NZ_CP053940_5	5.8\|1190958\|35\|NZ_CP053940\|PILER-CR,CRISPRCasFinder,CRT	1190958-1190992	35	NZ_CP016452	Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence	1371549-1371583	11	0.686
NZ_CP053940_5	5.9\|1191026\|34\|NZ_CP053940\|PILER-CR,CRISPRCasFinder,CRT	1191026-1191059	34	NZ_CP049157	Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence	1684394-1684427	11	0.676
NZ_CP053940_5	5.9\|1191026\|34\|NZ_CP053940\|PILER-CR,CRISPRCasFinder,CRT	1191026-1191059	34	NZ_CP049317	Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence	1950643-1950676	11	0.676
NZ_CP053940_4	4.10\|1183904\|34\|NZ_CP053940\|PILER-CR,CRISPRCasFinder,CRT	1183904-1183937	34	NZ_CP026974	Achromobacter insolitus strain FDAARGOS_88 plasmid unnamed1, complete sequence	354984-355017	12	0.647

1. spacer 1.2|108322|25|NZ_CP053940|CRISPRCasFinder matches to NZ_AP022849 (Bosea sp. ANAM02 plasmid pANAM02, complete sequence) position: , mismatch: 4, identity: 0.84

atcctcgtagtcatcctcgaaatcg	CRISPR spacer
gcgctcgcagtcatcctcgaaatcg	Protospacer
.. ****.*****************

2. spacer 1.4|108439|25|NZ_CP053940|CRISPRCasFinder matches to NZ_AP022849 (Bosea sp. ANAM02 plasmid pANAM02, complete sequence) position: , mismatch: 4, identity: 0.84

atcctcgtagtcatcctcgaaatcg	CRISPR spacer
gcgctcgcagtcatcctcgaaatcg	Protospacer
.. ****.*****************

3. spacer 1.5|108487|34|NZ_CP053940|CRISPRCasFinder matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 6, identity: 0.824

gtcgtcgcgatcgtcgaagtcgcgatcgt-cacgg	CRISPR spacer
gtcgtcgcgatcggtgaagtcgcgtccgcgcacg-	Protospacer
************* .********* .**. ****

4. spacer 5.2|1190556|34|NZ_CP053940|PILER-CR,CRISPRCasFinder,CRT matches to NC_017767 (Thermus thermophilus HB8 plasmid pVV8, complete sequence) position: , mismatch: 6, identity: 0.824

tgcacgaccgggacatgaacgccgccctgaacat	CRISPR spacer
agctggaccgggacctgaacgcggccctgaacct	Protospacer
 **  ********* ******* ********* *

5. spacer 1.5|108487|34|NZ_CP053940|CRISPRCasFinder matches to NC_016626 (Burkholderia sp. YI23 plasmid byi_1p, complete sequence) position: , mismatch: 7, identity: 0.794

gtcgtcgcgatcgtcgaagtcgcgatcgtcacgg	CRISPR spacer
ggcagcacgatcgtcgaagtcgcgatggccacgc	Protospacer
* *. *.******************* *.****

6. spacer 4.16|1184309|33|NZ_CP053940|PILER-CR,CRISPRCasFinder,CRT matches to MN856085 (Myoviridae sp. isolate 322, complete genome) position: , mismatch: 7, identity: 0.788

gaacgtggcgtgaccgtatggaacaaaccggag	CRISPR spacer
gaaaagggcgtgaccgtatggaagaacccgaac	Protospacer
*** . ***************** ** ***.*

7. spacer 5.6|1190823|34|NZ_CP053940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017887 (Pseudomonas frederiksbergensis strain ERDD5:01 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.794

tcgtcaagcagggtcttcaaaatcacac--ccggat	CRISPR spacer
ccgccaagcagggtcatcaaaatcacctcgccgg--	Protospacer
.**.*********** ********** .  ****

8. spacer 5.10|1191093|34|NZ_CP053940|PILER-CR,CRISPRCasFinder,CRT matches to NC_011368 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG201, complete sequence) position: , mismatch: 7, identity: 0.794

gtccacccactggtcgatggcgccgtccgaaccg	CRISPR spacer
gatggcccaccgctcgatggcgccgtccgaacca	Protospacer
* . .*****.* ********************.

9. spacer 4.1|1183300|35|NZ_CP053940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007515 (Rubrobacter radiotolerans strain RSPS-4 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.771

ttgcgtggcc---ttcctccgccgacaccacgtcccgg	CRISPR spacer
---catcggccagttcctccgcagacaccacctcccgg	Protospacer
   *.* * *   ********* ******** ******

10. spacer 4.4|1183503|33|NZ_CP053940|PILER-CR,CRISPRCasFinder,CRT matches to NC_019909 (Yersinia phage phiR1-RT complete genome) position: , mismatch: 8, identity: 0.758

cgatgat-atgacgcagaaaatattgaacgcata	CRISPR spacer
-ggtggcggcgacccagaaaatattgaacgtata	Protospacer
 *.**.. ..*** ****************.***

11. spacer 4.4|1183503|33|NZ_CP053940|PILER-CR,CRISPRCasFinder,CRT matches to NC_028820 (Yersinia phage vB_YenM_TG1, complete genome) position: , mismatch: 8, identity: 0.758

cgatgat-atgacgcagaaaatattgaacgcata	CRISPR spacer
-ggtggcggcgacccagaaaatattgaacgtata	Protospacer
 *.**.. ..*** ****************.***

12. spacer 4.12|1184038|33|NZ_CP053940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029834 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.758

acgagatggaacagcagggcgtggcaacctccc	CRISPR spacer
cggcggtggaacagcagggcgcggccacctcgg	Protospacer
  * *.***************.*** *****

13. spacer 4.29|1185184|36|NZ_CP053940|PILER-CR,CRISPRCasFinder,CRT matches to MN908687 (Gordonia phage Skog, complete genome) position: , mismatch: 8, identity: 0.778

cccggccggttcggcgggcacgtcgaggaaagctac	CRISPR spacer
cgaggtcggttcggcgagcacgtcgaggagcgcatc	Protospacer
*  **.**********.************. **  *

14. spacer 4.30|1185253|34|NZ_CP053940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049158 (Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence) position: , mismatch: 8, identity: 0.765

gcatcctcgaacagcgccgccgcatcaccaacct	CRISPR spacer
gcatccttgaaaagcgccgccgcacttcgcaccg	Protospacer
*******.*** ************.. *  ***

15. spacer 4.30|1185253|34|NZ_CP053940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049318 (Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence) position: , mismatch: 8, identity: 0.765

gcatcctcgaacagcgccgccgcatcaccaacct	CRISPR spacer
gcatccttgaaaagcgccgccgcacttcgcaccg	Protospacer
*******.*** ************.. *  ***

16. spacer 4.31|1185320|34|NZ_CP053940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034568 (Vibrio parahaemolyticus strain D3112 plasmid p2, complete sequence) position: , mismatch: 8, identity: 0.765

ttatccccacaaaccaaataaaaaagcccgaaaa	CRISPR spacer
atatcccaaaaaaccaaataaaaaacgccccaat	Protospacer
 ****** * ***************  **  **

17. spacer 4.31|1185320|34|NZ_CP053940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033143 (Vibrio parahaemolyticus strain 160807 plasmid pVPWZ1, complete sequence) position: , mismatch: 8, identity: 0.765

ttatccccacaaaccaaataaaaaagcccgaaaa	CRISPR spacer
atatcccaaaaaaccaaataaaaaacgccccaac	Protospacer
 ****** * ***************  **  **

18. spacer 4.31|1185320|34|NZ_CP053940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010885 (Vibrio parahaemolyticus strain CHN25 plasmid P1, complete sequence) position: , mismatch: 8, identity: 0.765

ttatccccacaaaccaaataaaaaagcccgaaaa	CRISPR spacer
atatcccaaaaaaccaaataaaaaacgccccaat	Protospacer
 ****** * ***************  **  **

19. spacer 4.31|1185320|34|NZ_CP053940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013250 (Vibrio parahaemolyticus strain FORC_022 plasmid, complete sequence) position: , mismatch: 8, identity: 0.765

ttatccccacaaaccaaataaaaaagcccgaaaa	CRISPR spacer
atatcccaaaaaaccaaataaaaaacgccccaat	Protospacer
 ****** * ***************  **  **

20. spacer 4.31|1185320|34|NZ_CP053940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034291 (Vibrio parahaemolyticus strain 20140722001-1 plasmid pVPCZ2014-1, complete sequence) position: , mismatch: 8, identity: 0.765

ttatccccacaaaccaaataaaaaagcccgaaaa	CRISPR spacer
atatcccaaaaaaccaaataaaaaacgccccaac	Protospacer
 ****** * ***************  **  **

21. spacer 4.31|1185320|34|NZ_CP053940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021149 (Vibrio campbellii strain LA16-V1 plasmid pLA16-3, complete sequence) position: , mismatch: 8, identity: 0.765

ttatccccacaaaccaaataaaaaagcccgaaaa	CRISPR spacer
atatcccaaaaaaccaaataaaaaacgccccaac	Protospacer
 ****** * ***************  **  **

22. spacer 4.31|1185320|34|NZ_CP053940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007006 (Vibrio parahaemolyticus UCM-V493 plasmid pVPUCMV, complete sequence) position: , mismatch: 8, identity: 0.765

ttatccccacaaaccaaataaaaaagcccgaaaa	CRISPR spacer
atatcccaaaaaaccaaataaaaaacgccccaat	Protospacer
 ****** * ***************  **  **

23. spacer 4.31|1185320|34|NZ_CP053940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034300 (Vibrio parahaemolyticus strain 20160303005-1 plasmid pVPSD2016-1, complete sequence) position: , mismatch: 8, identity: 0.765

ttatccccacaaaccaaataaaaaagcccgaaaa	CRISPR spacer
atatcccaaaaaaccaaataaaaaacgccccaac	Protospacer
 ****** * ***************  **  **

24. spacer 4.31|1185320|34|NZ_CP053940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034296 (Vibrio parahaemolyticus strain 20140829008-1 plasmid pVPGD2014-1, complete sequence) position: , mismatch: 8, identity: 0.765

ttatccccacaaaccaaataaaaaagcccgaaaa	CRISPR spacer
atatcccaaaaaaccaaataaaaaacgccccaac	Protospacer
 ****** * ***************  **  **

25. spacer 4.31|1185320|34|NZ_CP053940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019298 (Vibrio campbellii strain LMB29 plasmid pLMB96, complete sequence) position: , mismatch: 8, identity: 0.765

ttatccccacaaaccaaataaaaaagcccgaaaa	CRISPR spacer
atatcccaaaaaaccaaataaaaaacgccccaat	Protospacer
 ****** * ***************  **  **

26. spacer 4.31|1185320|34|NZ_CP053940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP033139 (Vibrio owensii strain 1700302 plasmid pVOWZ1, complete sequence) position: , mismatch: 8, identity: 0.765

ttatccccacaaaccaaataaaaaagcccgaaaa	CRISPR spacer
atatcccaaaaaaccaaataaaaaacgccccaac	Protospacer
 ****** * ***************  **  **

27. spacer 5.2|1190556|34|NZ_CP053940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032348 (Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence) position: , mismatch: 8, identity: 0.765

tgcacgaccgggacatgaacgccgccctgaacat	CRISPR spacer
gccgcgcccgggacatgaacgccgcgctcaccgt	Protospacer
  *.** ****************** ** * *.*

28. spacer 5.2|1190556|34|NZ_CP053940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012917 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p3, complete sequence) position: , mismatch: 8, identity: 0.765

tgcacgaccgggacatgaacgccgccctgaacat	CRISPR spacer
gccgcgcccgggacatgaacgccgcgctcaccgt	Protospacer
  *.** ****************** ** * *.*

29. spacer 5.2|1190556|34|NZ_CP053940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032343 (Azospirillum brasilense strain MTCC4038 plasmid p4, complete sequence) position: , mismatch: 8, identity: 0.765

tgcacgaccgggacatgaacgccgccctgaacat	CRISPR spacer
gccgcgcccgggacatgaacgccgcgctcaccgt	Protospacer
  *.** ****************** ** * *.*

30. spacer 1.5|108487|34|NZ_CP053940|CRISPRCasFinder matches to NC_016654 (Rhodococcus phage REQ3, complete genome) position: , mismatch: 9, identity: 0.735

gtcgtcgcgatcgtcgaagtcgcgatcgtcacgg	CRISPR spacer
ggtggtgtcgtcgtcgaggtcgcggtcgtcacgg	Protospacer
* .* .*. .*******.******.*********

31. spacer 4.30|1185253|34|NZ_CP053940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013381 (Burkholderia sp. Bp5365 strain MSMB43 plasmid pMSMB43, complete sequence) position: , mismatch: 9, identity: 0.735

gcatcctcgaacagcgccgccgcatcaccaacct	CRISPR spacer
gcatcctcgaccagcgacgccgcacgcgcggccg	Protospacer
********** ***** *******.   *..**

32. spacer 4.30|1185253|34|NZ_CP053940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP009547 (Burkholderia sp. 2002721687 plasmid pBTU, complete sequence) position: , mismatch: 9, identity: 0.735

gcatcctcgaacagcgccgccgcatcaccaacct	CRISPR spacer
gcatcctcgaccagcgacgccgcacgcgcggccg	Protospacer
********** ***** *******.   *..**

33. spacer 1.5|108487|34|NZ_CP053940|CRISPRCasFinder matches to CP006880 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence) position: , mismatch: 10, identity: 0.706

gtcgtcgcgatcgtcgaagtcgcgatcgtcacgg	CRISPR spacer
gtcgacgccatcgtcgaagtcgcggggacaaaag	Protospacer
**** *** ***************.  .. * .*

34. spacer 1.5|108487|34|NZ_CP053940|CRISPRCasFinder matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 10, identity: 0.706

gtcgtcgcgatcgtcgaagtcgcgatcgtcacgg	CRISPR spacer
gtcgacgccatcgtcgaagtcgcggggacaaaag	Protospacer
**** *** ***************.  .. * .*

35. spacer 4.12|1184038|33|NZ_CP053940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038639 (Cupriavidus oxalaticus strain X32 plasmid unnamed4, complete sequence) position: , mismatch: 10, identity: 0.697

acgagatggaacagcagggcgtggcaacctccc	CRISPR spacer
tggagttggagcagcagggcgtggcacgtcagc	Protospacer
  *** ****.***************  ..  *

36. spacer 4.35|1185592|33|NZ_CP053940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006371 (Aureimonas sp. AU20 plasmid pAU20d, complete sequence) position: , mismatch: 10, identity: 0.697

taaccgtggtgacctccgtgatcacggcgatca	CRISPR spacer
agaattccgtgacctccgcgaccacggcgatct	Protospacer
 .* . . **********.**.**********

37. spacer 5.10|1191093|34|NZ_CP053940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053441 (Rhizobium leguminosarum bv. trifolii strain CC275e plasmid pRltCC275eE, complete sequence) position: , mismatch: 10, identity: 0.706

gtccacccactggtcgatggcgccgtccgaaccg	CRISPR spacer
ccggtgccactcgtcgatggcgccgcccgaaacc	Protospacer
 .    ***** *************.***** *

38. spacer 1.5|108487|34|NZ_CP053940|CRISPRCasFinder matches to NZ_CP048421 (Sphingomonas insulae strain KCTC 12872 plasmid unnamed3, complete sequence) position: , mismatch: 11, identity: 0.676

gtcgtcgcgatcgtcgaagtcgcgatcgtcacgg	CRISPR spacer
ccgatcgcgatcgtcgtggtcgcgatcgctttga	Protospacer
 . .************ .**********.. .*.

39. spacer 5.8|1190958|35|NZ_CP053940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016452 (Sinorhizobium sp. RAC02 plasmid pBSY16_1, complete sequence) position: , mismatch: 11, identity: 0.686

ttcgagtcgcaggccaacggtgcggaaatctacta	CRISPR spacer
gaaaagtcccaggccgacggtgcggaaatggtcgg	Protospacer
   .**** ******.*************   * .

40. spacer 5.9|1191026|34|NZ_CP053940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 11, identity: 0.676

agtgctttcctgtccttgtcagcaggcatcggac	CRISPR spacer
gagcttcgtctgtccttgtgagcaggcaccggaa	Protospacer
..  .*. .********** ********.****

41. spacer 5.9|1191026|34|NZ_CP053940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 11, identity: 0.676

agtgctttcctgtccttgtcagcaggcatcggac	CRISPR spacer
gagcttcgtctgtccttgtgagcaggcaccggaa	Protospacer
..  .*. .********** ********.****

42. spacer 4.10|1183904|34|NZ_CP053940|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026974 (Achromobacter insolitus strain FDAARGOS_88 plasmid unnamed1, complete sequence) position: , mismatch: 12, identity: 0.647

aagacctgcaagcggcgtccgaaactccattgtg	CRISPR spacer
cttgactgcaagcggcgtcccaaaccccaaccat	Protospacer
   . *************** ****.*** .

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP053940

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection