CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP047609	Escherichia coli strain NMBU_ W06E18 chromosome, complete genome	3 crisprs	cas3,DEDDh,DinG,c2c9_V-U4,csa3,cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,PD-DExK,WYL,RT	10	12
NZ_CP047612	Escherichia coli strain NMBU_ W06E18 plasmid pNMBU_W06E18_Str1_3, complete sequence	0 crisprs	NA	0	0
NZ_CP047613	Escherichia coli strain NMBU_ W06E18 plasmid pNMBU_W06E18_Str1_4, complete sequence	0 crisprs	NA	0	0
NZ_CP047610	Escherichia coli strain NMBU_ W06E18 plasmid pNMBU_W06E18_Str1_1, complete sequence	0 crisprs	NA	0	0
NZ_CP047611	Escherichia coli strain NMBU_ W06E18 plasmid pNMBU_W06E18_Str1_2, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP047609_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047609_1

3154581-3155158

TypeI-E

I-E

Consensus_repeat	Method
CGATTTATCCCCGCTGGCGCGGGGAACAC	PILER-CR
TTTATCCCCGCTGGCGCGGGGAACAC	CRISPRCasFinder
TTTATCCCCGCTGGCGCGGGGAACAC	CRT

9 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP047609_1

>merge|NZ_CP047609|1|3154581-3155158|PILER-CR,CRISPRCasFinder,CRT
CGGTTTATCCCCGCTGACGCGGGGAACACGTCAATAGGCGGCGTCCCGTAGCCGTCCCCTTCGGTTTATCCCCGCTGGCGCGGGGAACACGTTGAGGTCGATAAGTACGAACGGTTTCCCTGCGGTTTATCCCCGCTGGCGCGGGGAACACGATCGCCTGCTCCAGCGTCACTCCCTGCCCCTCGATTTATCCCCGCTGGCGCGGGGAACACTTCTGATACGTACTGAGGCCGGTTGTGATACGCGATTTATCCCCGCTGGCGCGGGGAACACTAACCCCCAATGAAGTTAATAAAGTCTATGGCCGATTTATCCCCGCTGGCGCGGGGAACACATGAGATTAAAATACTCAGTACTCTTACTCGCCGATTTATCCCCGCTGGCGCGGGGAACACCAGCGTGGCGCGATAAAGCAATGTGTCTGGCTCGATTTATCCCCGCTGGCGCGGGGAACACCAGAGGCAACCGACGCGGATTCAGTAGGAAAGCGATTTATCCCCGCTGGCGCGGGGAACACCGATAGACACTTTGCGGTCATTGTCTATTCGGCGATTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP047609|1|1|3154581-3155158|PILER-CR
CGGTTTATCCCCGCTGACGCGGGGAACAC	GTCAATAGGCGGCGTCCCGTAGCCGTCCCCTT
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GTTGAGGTCGATAAGTACGAACGGTTTCCCTG
CGGTTTATCCCCGCTGGCGCGGGGAACAC	GATCGCCTGCTCCAGCGTCACTCCCTGCCCCT
CGATTTATCCCCGCTGGCGCGGGGAACAC	TTCTGATACGTACTGAGGCCGGTTGTGATACG
CGATTTATCCCCGCTGGCGCGGGGAACAC	TAACCCCCAATGAAGTTAATAAAGTCTATGGC
CGATTTATCCCCGCTGGCGCGGGGAACAC	ATGAGATTAAAATACTCAGTACTCTTACTCGC
CGATTTATCCCCGCTGGCGCGGGGAACAC	CAGCGTGGCGCGATAAAGCAATGTGTCTGGCT
CGATTTATCCCCGCTGGCGCGGGGAACAC	CAGAGGCAACCGACGCGGATTCAGTAGGAAAG
CGATTTATCCCCGCTGGCGCGGGGAACAC	CGATAGACACTTTGCGGTCATTGTCTATTCGG
CGATTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP047609|1|1|3154584-3155158|CRISPRCasFinder
TTTATCCCCGCTGACGCGGGGAACAC	GTCAATAGGCGGCGTCCCGTAGCCGTCCCCTTCGG
TTTATCCCCGCTGGCGCGGGGAACAC	GTTGAGGTCGATAAGTACGAACGGTTTCCCTGCGG
TTTATCCCCGCTGGCGCGGGGAACAC	GATCGCCTGCTCCAGCGTCACTCCCTGCCCCTCGA
TTTATCCCCGCTGGCGCGGGGAACAC	TTCTGATACGTACTGAGGCCGGTTGTGATACGCGA
TTTATCCCCGCTGGCGCGGGGAACAC	TAACCCCCAATGAAGTTAATAAAGTCTATGGCCGA
TTTATCCCCGCTGGCGCGGGGAACAC	ATGAGATTAAAATACTCAGTACTCTTACTCGCCGA
TTTATCCCCGCTGGCGCGGGGAACAC	CAGCGTGGCGCGATAAAGCAATGTGTCTGGCTCGA
TTTATCCCCGCTGGCGCGGGGAACAC	CAGAGGCAACCGACGCGGATTCAGTAGGAAAGCGA
TTTATCCCCGCTGGCGCGGGGAACAC	CGATAGACACTTTGCGGTCATTGTCTATTCGGCGA
TTTATCCCCGCTGGCGCGGGGAACAC

>NZ_CP047609|1|1|3154584-3155158|CRT
TTTATCCCCGCTGACGCGGGGAACAC	GTCAATAGGCGGCGTCCCGTAGCCGTCCCCTTCGG
TTTATCCCCGCTGGCGCGGGGAACAC	GTTGAGGTCGATAAGTACGAACGGTTTCCCTGCGG
TTTATCCCCGCTGGCGCGGGGAACAC	GATCGCCTGCTCCAGCGTCACTCCCTGCCCCTCGA
TTTATCCCCGCTGGCGCGGGGAACAC	TTCTGATACGTACTGAGGCCGGTTGTGATACGCGA
TTTATCCCCGCTGGCGCGGGGAACAC	TAACCCCCAATGAAGTTAATAAAGTCTATGGCCGA
TTTATCCCCGCTGGCGCGGGGAACAC	ATGAGATTAAAATACTCAGTACTCTTACTCGCCGA
TTTATCCCCGCTGGCGCGGGGAACAC	CAGCGTGGCGCGATAAAGCAATGTGTCTGGCTCGA
TTTATCCCCGCTGGCGCGGGGAACAC	CAGAGGCAACCGACGCGGATTCAGTAGGAAAGCGA
TTTATCCCCGCTGGCGCGGGGAACAC	CGATAGACACTTTGCGGTCATTGTCTATTCGGCGA
TTTATCCCCGCTGGCGCGGGGAACAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047609.1\|WP_001295182.1\|3146393_3147155_-\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP047609.1\|WP_000568924.1\|3147135_3148185_-\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP047609.1\|WP_000372392.1\|3152301_3153210_-\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP047609.1\|WP_000029331.1\|3158923_3159460_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
NZ_CP047609.1\|WP_000517476.1\|3149389_3149701_-\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP047609.1\|WP_001521152.1\|3148181_3148661_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP047609.1\|WP_020234039.1\|3157096_3157843_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP047609.1\|WP_001521160.1\|3164427_3165162_-\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP047609.1\|WP_000246138.1\|3148660_3149371_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP047609.1\|WP_001521158.1\|3161116_3163816_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP047609.1\|WP_000956458.1\|3164010_3164163_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	unknown	unknown	gnl\|CDD\|366840
NZ_CP047609.1\|WP_001521155.1\|3156464_3157115_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_CP047609.1\|WP_001173673.1\|3150267_3150873_-\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP047609.1\|WP_001521153.1\|3153461_3154499_+\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP047609.1\|WP_001246104.1\|3149894_3150218_-\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP047609.1\|WP_001084115.1\|3159456_3161019_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP047609.1\|WP_000144858.1\|3155544_3156468_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP047609.1\|WP_001521154.1\|3155254_3155548_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP047609.1\|WP_001090361.1\|3150872_3152300_-\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP047609.1\|WP_001521157.1\|3157853_3158909_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843

Protein	Function_ID	Function_description	E-value
NZ_CP047609.1\|WP_001295182.1\|3146393_3147155_-\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
NZ_CP047609.1\|WP_000568924.1\|3147135_3148185_-\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP047609.1\|WP_000372392.1\|3152301_3153210_-\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP047609.1\|WP_000029331.1\|3158923_3159460_-\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	4.72866e-28
NZ_CP047609.1\|WP_000517476.1\|3149389_3149701_-\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
NZ_CP047609.1\|WP_001521152.1\|3148181_3148661_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	2.39634e-105
NZ_CP047609.1\|WP_020234039.1\|3157096_3157843_-\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	7.25317e-47
NZ_CP047609.1\|WP_001521160.1\|3164427_3165162_-\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	4.91666e-137
NZ_CP047609.1\|WP_000246138.1\|3148660_3149371_-\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.26939e-121
NZ_CP047609.1\|WP_001521158.1\|3161116_3163816_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP047609.1\|WP_000956458.1\|3164010_3164163_-\|type-I-toxin-antitoxin-system-Hok-family-toxin	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	8.32243e-12
NZ_CP047609.1\|WP_001521155.1\|3156464_3157115_-\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	3.05036e-90
NZ_CP047609.1\|WP_001173673.1\|3150267_3150873_-\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148
NZ_CP047609.1\|WP_001521153.1\|3153461_3154499_+\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP047609.1\|WP_001246104.1\|3149894_3150218_-\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
NZ_CP047609.1\|WP_001084115.1\|3159456_3161019_-\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP047609.1\|WP_000144858.1\|3155544_3156468_-\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.11358e-157
NZ_CP047609.1\|WP_001521154.1\|3155254_3155548_-\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	9.65861e-64
NZ_CP047609.1\|WP_001090361.1\|3150872_3152300_-\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP047609.1\|WP_001521157.1\|3157853_3158909_-\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	7.45078e-156

>NZ_CP047609.1|WP_001521153.1|3153461_3154499_+|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSALRHRTAALALGVCFILPVHASSAKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEVFDKAGIAVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>NZ_CP047609.1|WP_000372392.1|3152301_3153210_-|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NZ_CP047609.1|WP_001090361.1|3150872_3152300_-|sulfate-adenylyltransferase-subunit-CysN
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEETFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>NZ_CP047609.1|WP_001173673.1|3150267_3150873_-|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>NZ_CP047609.1|WP_001246104.1|3149894_3150218_-|DUF3561-family-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>NZ_CP047609.1|WP_000517476.1|3149389_3149701_-|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>NZ_CP047609.1|WP_000246138.1|3148660_3149371_-|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>NZ_CP047609.1|WP_001521152.1|3148181_3148661_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPLIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>NZ_CP047609.1|WP_000568924.1|3147135_3148185_-|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGALRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>NZ_CP047609.1|WP_001295182.1|3146393_3147155_-|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW
>NZ_CP047609.1|WP_001521154.1|3155254_3155548_-|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRIAIWLLEVRAGVYVGDTSKRIREMIWQQISQLAGCGNVVMAWATNTESGFEFQTWGENRRIPVDLDGVRLVSFLPVDNQ
>NZ_CP047609.1|WP_000144858.1|3155544_3156468_-|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLSPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLAATVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALTEDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRQTYALLAKQYGVKWNGRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYDIADIIKFDSVVPKAFEIAARQPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPETLGDSGHRGRGG
>NZ_CP047609.1|WP_001521155.1|3156464_3157115_-|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTGQLLPAQLLHLVGRGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQERPAESDIFTIECRPFAPELRTGQSLCFNLRANPTICKAGKRHDLLMEAKRQVRGQVEGSDVWLHQQQAALDWLAAQGERSGFTLLDTSVDAYRQQQLRRENSRQLIQFSSVDYTGMLTVTDPGLFLQRLSQGYGKSRAFGCGLMLIKPGAEA
>NZ_CP047609.1|WP_020234039.1|3157096_3157843_-|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTVQMPKEVRKARYFSRREELSAPDLLSAIISRRDYYTDAWWMVAVATTPDASYRLEQLQDGLRHPVFPLYLGRKSHPLALPLAPLLLEGNASDVLRNAYQQYQDSFRELKVSLPKLQDECWWEGEHDGLVASKILRRRDVPLNRQQWLFGERTINQGPWLSKEEPCTSQE
>NZ_CP047609.1|WP_001521157.1|3157853_3158909_-|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRVSSQSLKRAWRTSALFEQALAGHIGIRSGRIAREAATILIEKGIEEKKAIEWAAKIADYLGKAKNDKKPKDPLTNAETEQLVHISPAEFDAVKALAHQLAEEKRAPKEEDLALLRKDRMAVDIAMFGRMLANKPEFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASEDAGAGHLGETGFGSALFYTYICIDKDLLVENLGGDEALANQTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTEQPRSLAAAFYEPINGTRQLDVAVQRITTLRENMNTVYEQKTECVSFDVMNKQGSMKDVLDFICA
>NZ_CP047609.1|WP_000029331.1|3158923_3159460_-|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVKEEHKATLRKWHEELQEKRGNRASLRRSTTVNDVCLSEGFRSLLMQTHTLWKIEAQEWRFTALALVAAVSANVKAIDERQPFAAQLAAVMSEGRFTRLSAVKTPDDLLRQLRRAVKLLNGSVNLISLAEDIFRWCQESDDLLNHHRRQQRPTEFIRIRWALEYYQAGDADNEQN
>NZ_CP047609.1|WP_001084115.1|3159456_3161019_-|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNSFSLLTTPWLPVRYKDGTTGKLAPVDLADENVVDIAAPRADLQGAAWQFLLGLLQTSFAPKDHRRWDDIWEDGLESEKLREALLSLEHAFQFGPDSPSFMQDFEALTGDKVQVASLLPEIPGAQTTKFNKDHFIKRGVTEYLCPHCSALALFSLQLNAPSGGKGYRTGLRGGGPMTTLIELQEYQGNQQTPLWRKLWLNVMPQDEADLPLPKKFDDLVFPWLGPTRTSELAGAVVTDDQVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQNDALLSLMTTKNYGANYAMWQHPLTPYRVPLKEGGEFYSVKPQPGGLIWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYEHHFPLLLDKKEGQIPKLRLAAQTASRILSLLRSALKEAWFSDPKGARGDFSFVDIDFWNKTQHRFLRLVRHIEEGQDADELLSKWQKEIWLFARQDFDERVFTNPYEPVDLKRVMTARKKYFTTSAEKQNAKAAREKKQEAAE
>NZ_CP047609.1|WP_001521158.1|3161116_3163816_-|CRISPR-associated-helicase/endonuclease-Cas3
MRKYPLSLLKDKNIVTFFDFWGKTRRGEKDGGDDYHLLCWHSLDVAAMGYLMVKSNCFGLTDYFRQLGFADTEQAAQFFAWLLCWHDTGKFARSFQQLYLHPQLKVPEGARKNYEKISHSTLGYWLWHHYLSEYEELLPSSSLSPRKLKRVMEMWMPITTGHHGRPPDRIDELDNFLPEDKAAARDFLLEIKPLFPLIEIPAFWDDDEGIELIKHLSWYISATVVLADWTGSSTRFFPRVAHPMDIKGYWQKTLVQAQNALTVFPLKAKVAPFTGINTLFPFIENPTPLQQKVLDLDISQPGPQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLFFGLPTMATANAMYDRLVKTWLAFYSPESRPSLVLAHSARTLMDRFNESLWSGDLVGSEEPDEQTFSQGCAAWFADSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQCDKLVAAFARGTEGQQEAPFLEKDDYPWLTHVTKSDVHSHRVATRKDVERSVSVGWLHSEQECIARIESAVSQGKCIAWIRNSVDDAIKVYRQLLARGVIPASSLSLFHSRFAFSDRQRIETETLARFGKEDSSQRAGKVLICTQVLESSVDCDMDEMISDLAPVDLLIQRAGRLQRHIRDINGQLKRDGKDERSPPELLILAPVWDDAPGDEWFGSAMRNSAYVYPDHGRIWLTQRVLREQGAIQMPHAARLLIESVYGEDVVMPEGFARSEQEQVGKYYCDRAMAKKFVLNFRPGYAANINDYLPEKLSTRLAEESVSLWLATCIASVVKPYANGAHAWEMSVVRVRRSWWKKHRDEFSLLEGEAFRQWCIEQRKDPEMANVILVTDDESCGYSAMEGLTGKVG
>NZ_CP047609.1|WP_000956458.1|3164010_3164163_-|type-I-toxin-antitoxin-system-Hok-family-toxin
MLTKYALVAIIVLCCTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK
>NZ_CP047609.1|WP_001521160.1|3164427_3165162_-|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRTNLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG

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Crispr_ID: NZ_CP047609_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047609_2

3182296-3182629

Orphan

I-E

Consensus_repeat	Method
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CRISPRCasFinder
CGGTTTATCCCCGCTGGCGCGGGGAACTC	CRT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	PILER-CR

5 spacers

The CRISPR arrays of NZ_CP047609_2

>merge|NZ_CP047609|2|3182296-3182629|CRISPRCasFinder,CRT,PILER-CR
TGGTTTATTCCCGCTGGTGCGGGGAACTCATCAGTGATATCCAACATTGCGGAGCTAAACGCGGTTTATCCCCGCTGGCGCGGGGAACTCTAATATCCCTGGCGATAATCAACCGGCTTACTCGGTTTATCCCCGCTGGCGCGGGGAACTCGAGAGCGAGGGGAGATTCCGGCAGGGCGTGCACGGTTTATCCCCGCTGGCGCGGGGAACTCGCGGGTATGCTCCGCTCCGTGTTCGACAAACTCGGTTTATCCCCGCTGGCGCGGGGAACTCAAGGTCGCGGGGACGCCACGGGCAGTCAATGTCGGTTTATCCCCGCTGGCGCGGGGAACTC

>NZ_CP047609|2|2|3182296-3182629|CRISPRCasFinder
TGGTTTATTCCCGCTGGTGCGGGGAACTC	ATCAGTGATATCCAACATTGCGGAGCTAAACG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TAATATCCCTGGCGATAATCAACCGGCTTACT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GAGAGCGAGGGGAGATTCCGGCAGGGCGTGCA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCGGGTATGCTCCGCTCCGTGTTCGACAAACT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	AAGGTCGCGGGGACGCCACGGGCAGTCAATGT
CGGTTTATCCCCGCTGGCGCGGGGAACTC

>NZ_CP047609|2|2|3182296-3182629|CRT
TGGTTTATTCCCGCTGGTGCGGGGAACTC	ATCAGTGATATCCAACATTGCGGAGCTAAACG
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TAATATCCCTGGCGATAATCAACCGGCTTACT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GAGAGCGAGGGGAGATTCCGGCAGGGCGTGCA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCGGGTATGCTCCGCTCCGTGTTCGACAAACT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	AAGGTCGCGGGGACGCCACGGGCAGTCAATGT
CGGTTTATCCCCGCTGGCGCGGGGAACTC

>NZ_CP047609|2|2|3182357-3182629|PILER-CR
CGGTTTATCCCCGCTGGCGCGGGGAACTC	TAATATCCCTGGCGATAATCAACCGGCTTACT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GAGAGCGAGGGGAGATTCCGGCAGGGCGTGCA
CGGTTTATCCCCGCTGGCGCGGGGAACTC	GCGGGTATGCTCCGCTCCGTGTTCGACAAACT
CGGTTTATCCCCGCTGGCGCGGGGAACTC	AAGGTCGCGGGGACGCCACGGGCAGTCAATGT
CGGTTTATCCCCGCTGGCGCGGGGAACTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047609.1\|WP_000059301.1\|3176247_3177702_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP047609.1\|WP_001521165.1\|3173202_3174063_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
NZ_CP047609.1\|WP_021523232.1\|3177771_3178557_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187605
NZ_CP047609.1\|WP_020233775.1\|3178875_3180153_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NZ_CP047609.1\|WP_000254738.1\|3188977_3189313_-\|endoribonuclease-MazF	unknown	unknown	gnl\|CDD\|182138
NZ_CP047609.1\|WP_001199973.1\|3182967_3183639_-\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP047609.1\|WP_000186450.1\|3195941_3198698_+\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
NZ_CP047609.1\|WP_000608644.1\|3193687_3194950_-\|IS1380-like-element-ISEc9-family-transposase	unknown	unknown	gnl\|CDD\|379340
NZ_CP047609.1\|WP_001521167.1\|3174059_3174839_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
NZ_CP047609.1\|WP_001130266.1\|3171044_3171620_+\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865
NZ_CP047609.1\|WP_000226798.1\|3189638_3191873_-\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
NZ_CP047609.1\|WP_000039721.1\|3180179_3181658_+\|sugar-kinase	unknown	unknown	gnl\|CDD\|212662
NZ_CP047609.1\|WP_001071643.1\|3188114_3188906_-\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP047609.1\|WP_000036723.1\|3184864_3186163_-\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP047609.1\|WP_100190663.1\|3171754_3173103_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|222853
NZ_CP047609.1\|WP_000581937.1\|3189312_3189561_-\|type-II-toxin-antitoxin-system-antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
NZ_CP047609.1\|WP_000210878.1\|3186249_3187887_-\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP047609.1\|WP_000147654.1\|3174816_3176226_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_CP047609.1\|WP_000109536.1\|3170767_3171028_+\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|225289
NZ_CP047609.1\|WP_020232912.1\|3183932_3184805_+\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429

Protein	Function_ID	Function_description	E-value
NZ_CP047609.1\|WP_000059301.1\|3176247_3177702_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	1.6361e-82
NZ_CP047609.1\|WP_001521165.1\|3173202_3174063_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	8.34461e-89
NZ_CP047609.1\|WP_021523232.1\|3177771_3178557_-\|SDR-family-oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.07958e-139
NZ_CP047609.1\|WP_020233775.1\|3178875_3180153_+\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	1.01506e-28
NZ_CP047609.1\|WP_000254738.1\|3188977_3189313_-\|endoribonuclease-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	1.17475e-74
NZ_CP047609.1\|WP_001199973.1\|3182967_3183639_-\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.98248e-155
NZ_CP047609.1\|WP_000186450.1\|3195941_3198698_+\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
NZ_CP047609.1\|WP_000608644.1\|3193687_3194950_-\|IS1380-like-element-ISEc9-family-transposase	gnl\|CDD\|379340	pfam13701, DDE_Tnp_1_4, Transposase DDE domain group 1. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	8.84516e-54
NZ_CP047609.1\|WP_001521167.1\|3174059_3174839_-\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	8.81851e-61
NZ_CP047609.1\|WP_001130266.1\|3171044_3171620_+\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	5.83077e-88
NZ_CP047609.1\|WP_000226798.1\|3189638_3191873_-\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
NZ_CP047609.1\|WP_000039721.1\|3180179_3181658_+\|sugar-kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	2.76431e-108
NZ_CP047609.1\|WP_001071643.1\|3188114_3188906_-\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	9.36315e-160
NZ_CP047609.1\|WP_000036723.1\|3184864_3186163_-\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP047609.1\|WP_100190663.1\|3171754_3173103_+\|IS3-family-transposase	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	1.29095e-52
NZ_CP047609.1\|WP_000581937.1\|3189312_3189561_-\|type-II-toxin-antitoxin-system-antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48
NZ_CP047609.1\|WP_000210878.1\|3186249_3187887_-\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP047609.1\|WP_000147654.1\|3174816_3176226_-\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.45668e-51
NZ_CP047609.1\|WP_000109536.1\|3170767_3171028_+\|ferredoxin-family-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	4.39108e-42
NZ_CP047609.1\|WP_020232912.1\|3183932_3184805_+\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	6.02863e-94

>NZ_CP047609.1|WP_000039721.1|3180179_3181658_+|sugar-kinase
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKTWAWSEDAAVMEKFNIPRHMLFDVQMPGTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKLLPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDAKAQDLSPEDLLNKKASCVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDKMVRVKDIFMPVESNAKRYNAMNKGIFKELTKHTDVILKKSYEVMHGELGNADSIQSWSNA
>NZ_CP047609.1|WP_020233775.1|3178875_3180153_+|MFS-transporter
MQHNSYRRWIALAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSASLKTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSVLGLLALTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGYWQDTLPAAEAYRNMWLMGMAALAMVIVFTFLLFQKIRTADSAPAMASSK
>NZ_CP047609.1|WP_021523232.1|3177771_3178557_-|SDR-family-oxidoreductase
MSIESLNALSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANIFIPSFVKDNGETKEMIEKQGVEVDFMQVDITAEGAPQKIIAACCERFGTVDILINNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASPASNYVNGHLLVVDGGYLVR
>NZ_CP047609.1|WP_000059301.1|3176247_3177702_-|FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWTLLEGLKKQFDPNGIMNTGTIYPIEK
>NZ_CP047609.1|WP_000147654.1|3174816_3176226_-|MFS-transporter
MTGRCLFGFSGEKPFLLPDNEGIKMNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISESPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVATATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLLLAAVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>NZ_CP047609.1|WP_001521167.1|3174059_3174839_-|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNILLAFKAEPDAGMLAEKEWQAAAQGNSGPDVSLLRSLLGADEQAAAALLLAQRKNGTSMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFAPEFVARHIAEWQYQNPLELIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDAPFITLEQRTENGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAVGKAAIIRKTVAAESPAMQCLQLARAEQQRGATLIDGQTVAEKAQKLWQDYLRQRMQP
>NZ_CP047609.1|WP_001521165.1|3173202_3174063_-|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNIAIVTINQENAATASWQAAQDFSGCTLAHWKIEPQPAVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHWGNALTATLQTEKRPLCLSLARQAGADKNATLPSGMQQLNIVPGALPDWLVSIENLKNVTRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEALVTNIHAECQ
>NZ_CP047609.1|WP_100190663.1|3171754_3173103_+|IS3-family-transposase
MKHSFEVKLAAVNHYLAGHAGIISTAKLFQLSHTSLSHWINLFLLHGPRALDCRHKRSYSPEDKLCVVLYALGHSESLPRVAARFNIPSHNTVKNWIKGYRKSGNEAFIRRRKEKSMTRSDDTHENEANMTPEEMKNELRYLRAENAYLKAMQEHLLEKKPPGAGEKTKVIRSLRCGHCQSDLLKAAGLARSTLYYQLSLQKAKDKYADVKQLIASIFHEHRGCYGYRRIHCELQKRGLKFSGKTVRKLMQQLGLKSPVRLKKYRSYRGNMGLAAENILQRQFKAEAPCEKWVTDITEFRAGGQKLYLSPILDLFNGEIVAWETACRPTEELVKRMLNKGLESLAEGEKPLLHSDQGWHYRIKSYQSALADRGLVQSMSRKGNCLDNAVMENFFGHLKEEMYYRRDYRNVEELENAVNEYITYWNQKRIKLSLGGLSPVEYRTEHQKAG
>NZ_CP047609.1|WP_001130266.1|3171044_3171620_+|glycerol-3-phosphate-responsive-antiterminator
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISNIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>NZ_CP047609.1|WP_000109536.1|3170767_3171028_+|ferredoxin-family-protein
MSVARNLWRVADAPHIVPADSVERQTVQRLINACPAGLFSLTPEGDLRVDYRGCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG
>NZ_CP047609.1|WP_001199973.1|3182967_3183639_-|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP047609.1|WP_020232912.1|3183932_3184805_+|YgcG-family-protein
MRYFILIFTFVCSFIAAQPTIVPSLQQQVTDLTSSLNSQEKKELTYKLESIFNNTQVQIAVLIVPTTKDETIEKYATRVFDNWRLGDAKRNDGILIIVAWSDRTVRIQVGYGLEEKVTDALAGDIIRSNMIPAFKQQKLAQGLELAINALNNQLTSQHQYPANPSEIESASSSDHYYFAIFWVFAVMFFPFWFFHQGSNFCRACKSSVCISAIYLLDLFLFSDKTFSIAVFFFFFTFTTIMVFTCLCVLQKRASGRSYHSDNSGSAGGSDSGGFSDGGGSSGGGGASGRW
>NZ_CP047609.1|WP_000036723.1|3184864_3186163_-|phosphopyruvate-hydratase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP047609.1|WP_000210878.1|3186249_3187887_-|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>NZ_CP047609.1|WP_001071643.1|3188114_3188906_-|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVIDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>NZ_CP047609.1|WP_000254738.1|3188977_3189313_-|endoribonuclease-MazF
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>NZ_CP047609.1|WP_000581937.1|3189312_3189561_-|type-II-toxin-antitoxin-system-antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>NZ_CP047609.1|WP_000226798.1|3189638_3191873_-|GTP-diphosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRECVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVMANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>NZ_CP047609.1|WP_000608644.1|3193687_3194950_-|IS1380-like-element-ISEc9-family-transposase
MINKIDFKAKNLTSNAGLFLLLENAKSNGIFDFIENDLVFDNDSTNKIKMNHIKTMLCGHFIGIDKLERLKLLQNDPLVNEFDISVKEPETVSRFLGNFNFKTTQMFRDINFKVFKKLLTKSKLTSITIDIDSSVINVEGHQEGASKGYNPKKLGNRCYNIQFAFCDELKAYVTGFVRSGNTYTANGAAEMIKEIVANIKSDDLEILFRMDSGYFDEKIIETIESLGCKYLIKAKSYSTLTSQATNSSIVFVKGEEGRETTELYTKLVKWEKDRRFVVSRVLKPEKERAQLSLLEGSEYDYFFFVTNTTLLSEKVVIYYEKRGNAENYIKEAKYDMAVGHLLLKSFWANEAVFQMMMLSYNLFLLFKFDSLDSSEYRQQIKTFRLKYVFLAAKIIKTARYVIMKLSENYPYKGVYEKCLV
>NZ_CP047609.1|WP_000186450.1|3195941_3198698_+|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSTEYGMSLQNRESIGQLISVLHRRHSDIVRAISVYDENNRLFVTSNFHLDPSSMQLGSNVPFPRQLTVTRDGDIMILRTPIISESYSPDESPSSDAKNSQNMLGYIALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREPLTMQHERLAKAVSMTDFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHHKQNTLLPVTDESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRYKPGSGISSRVVTPEVNEIVVNPNATLDWQLALRQAAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGENPEGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELLELLDEMDNVAREASKILG

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Crispr_ID: NZ_CP047609_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP047609_3

4925616-4925765

Orphan

Consensus_repeat	Method
CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP047609_3

>merge|NZ_CP047609|3|4925616-4925765|CRISPRCasFinder
CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCATGCCGCATCCGACAATAACAGCATTGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTTCA

>NZ_CP047609|3|3|4925616-4925765|CRISPRCasFinder
CGCGTCTTATCAGGCCTACGAGTTCGGTGCTGTGTAGGTCGGATAAGGCGTTCA	TGCCGCATCCGACAATAACAGCATTGCCTGATGCGACGCTTG
CGCGTCTTATCAGGCCTACGAGTTCAGTGCTGTGTAGGTCGGATAAGGCGTTCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP047609.1\|WP_000256681.1\|4915609_4916203_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP047609.1\|WP_001318460.1\|4936552_4937572_-\|NADPH-dependent-aldehyde-reductase-Ahr	unknown	unknown	gnl\|CDD\|176186
NZ_CP047609.1\|WP_000998695.1\|4933949_4934714_-\|gluconate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|181225
NZ_CP047609.1\|WP_000012907.1\|4918573_4919578_-\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|179587
NZ_CP047609.1\|WP_029701911.1\|4925801_4927313_-\|leucyl-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
NZ_CP047609.1\|WP_000584114.1\|4927579_4928680_+\|LPS-export-ABC-transporter-permease-LptF	unknown	unknown	gnl\|CDD\|185075
NZ_CP047609.1\|WP_001309159.1\|4931502_4932501_-\|DNA-binding-transcriptional-regulator-IdnR	unknown	unknown	gnl\|CDD\|380489
NZ_CP047609.1\|WP_001128347.1\|4932567_4933887_-\|gnt-II-system-L-idonate-transporter	unknown	unknown	gnl\|CDD\|129873
NZ_CP047609.1\|WP_000002953.1\|4919739_4920156_+\|ribonuclease-E-inhibitor-RraB	unknown	unknown	gnl\|CDD\|236876
NZ_CP047609.1\|WP_001197411.1\|4934737_4935769_-\|L-idonate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|182130
NZ_CP047609.1\|WP_001326836.1\|4916347_4916800_+\|toxin-antitoxin-biofilm-protein-TabA	unknown	unknown	gnl\|CDD\|225345
NZ_CP047609.1\|WP_000036448.1\|4916922_4918518_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP047609.1\|WP_000896738.1\|4935985_4936549_+\|gluconokinase	unknown	unknown	gnl\|CDD\|182097
NZ_CP047609.1\|WP_016245205.1\|4920897_4922094_+\|DUF898-domain-containing-protein	unknown	unknown	gnl\|CDD\|226719
NZ_CP047609.1\|WP_001059412.1\|4920201_4920705_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP047609.1\|WP_000500687.1\|4914825_4915539_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|183714
NZ_CP047609.1\|WP_000786399.1\|4925004_4925448_-\|DNA-polymerase-III-subunit-chi	unknown	unknown	gnl\|CDD\|235581
NZ_CP047609.1\|WP_021523335.1\|4929922_4931425_-\|DUF853-domain-containing-protein	unknown	unknown	gnl\|CDD\|283518
NZ_CP047609.1\|WP_001295681.1\|4928679_4929762_+\|LPS-export-ABC-transporter-permease-LptG	unknown	unknown	gnl\|CDD\|237900
NZ_CP047609.1\|WP_000416387.1\|4922149_4925005_-\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582

Protein	Function_ID	Function_description	E-value
NZ_CP047609.1\|WP_000256681.1\|4915609_4916203_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.07846e-09
NZ_CP047609.1\|WP_001318460.1\|4936552_4937572_-\|NADPH-dependent-aldehyde-reductase-Ahr	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	1.21683e-169
NZ_CP047609.1\|WP_000998695.1\|4933949_4934714_-\|gluconate-5-dehydrogenase	gnl\|CDD\|181225	PRK08085, PRK08085, gluconate 5-dehydrogenase; Provisional.	0
NZ_CP047609.1\|WP_000012907.1\|4918573_4919578_-\|ornithine-carbamoyltransferase	gnl\|CDD\|179587	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional.	0
NZ_CP047609.1\|WP_029701911.1\|4925801_4927313_-\|leucyl-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
NZ_CP047609.1\|WP_001295681.1\|4928679_4929762_+\|LPS-export-ABC-transporter-permease-LptG	gnl\|CDD\|237900	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional.	0
NZ_CP047609.1\|WP_001309159.1\|4931502_4932501_-\|DNA-binding-transcriptional-regulator-IdnR	gnl\|CDD\|380489	cd01575, PBP1_GntR, ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding, which in turn changes the DNA binding affinity of the repressor.	1.4437e-109
NZ_CP047609.1\|WP_001128347.1\|4932567_4933887_-\|gnt-II-system-L-idonate-transporter	gnl\|CDD\|129873	TIGR00791, Gluconate_permease, gluconate transporter. This family includes known gluconate transporters of E. coli and Bacillus species as well as an idonate transporter from E. coli. [Transport and binding proteins, Carbohydrates, organic alcohols, and acids].	0
NZ_CP047609.1\|WP_000002953.1\|4919739_4920156_+\|ribonuclease-E-inhibitor-RraB	gnl\|CDD\|236876	PRK11191, PRK11191, ribonuclease E inhibitor RraB.	4.50628e-69
NZ_CP047609.1\|WP_001197411.1\|4934737_4935769_-\|L-idonate-5-dehydrogenase	gnl\|CDD\|182130	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional.	0
NZ_CP047609.1\|WP_001326836.1\|4916347_4916800_+\|toxin-antitoxin-biofilm-protein-TabA	gnl\|CDD\|225345	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism].	3.64234e-69
NZ_CP047609.1\|WP_000416387.1\|4922149_4925005_-\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
NZ_CP047609.1\|WP_000896738.1\|4935985_4936549_+\|gluconokinase	gnl\|CDD\|182097	PRK09825, idnK, gluconokinase.	1.3617e-126
NZ_CP047609.1\|WP_016245205.1\|4920897_4922094_+\|DUF898-domain-containing-protein	gnl\|CDD\|226719	COG4269, COG4269, Predicted membrane protein [Function unknown].	3.05031e-150
NZ_CP047609.1\|WP_001059412.1\|4920201_4920705_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	7.73712e-19
NZ_CP047609.1\|WP_000500687.1\|4914825_4915539_-\|SDR-family-oxidoreductase	gnl\|CDD\|183714	PRK12742, PRK12742, SDR family oxidoreductase.	5.2218e-149
NZ_CP047609.1\|WP_000786399.1\|4925004_4925448_-\|DNA-polymerase-III-subunit-chi	gnl\|CDD\|235581	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated.	5.53743e-66
NZ_CP047609.1\|WP_021523335.1\|4929922_4931425_-\|DUF853-domain-containing-protein	gnl\|CDD\|283518	pfam05872, DUF853, Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. BMEI1370 is thought to be an ATPase.	0
NZ_CP047609.1\|WP_000584114.1\|4927579_4928680_+\|LPS-export-ABC-transporter-permease-LptF	gnl\|CDD\|185075	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional.	0

>NZ_CP047609.1|WP_000786399.1|4925004_4925448_-|DNA-polymerase-III-subunit-chi
MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGPRGGAPVEIAWPQKRSSSPRDILISLRTSFADFATAFTEVVDFVPYEDSLKQLARERYKAYRVAGFNLNTATWK
>NZ_CP047609.1|WP_000416387.1|4922149_4925005_-|valine--tRNA-ligase
MEKTYNPQDIEQPLYEHWEKQGYFKPNGDESQESFCIMIPPPNVTGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKIAAEEGKTRHDYGREAFIDKIWEWKAESGGTITRQMRRLGNSVDWERERFTMDEGLSNAVKEVFVRLYKEDLIYRGKRLVNWDPKLRTAISDLEVENRESKGSMWHIRYPLADGAKTADGKDYLVVATTRPETLLGDTGVAVNPEDPRYKDLIGKYVILPLVNRRIPIVGDEHADMEKGTGCVKITPAHDFNDYEVGKRHALPMINILTFDGDIRESAQVFDTKGNESDVYSSEIPAEFQKLERFAARKAVVAAVDALGLLEEIKPHDLTVPYGDRGGVVIEPMLTDQWYVRADVLAKPAVEAVENGDIQFVPKQYENMYFSWMRDIQDWCISRQLWWGHRIPAWYDEAGNVYVGRNEDEVRKENNLGADVALRQDEDVLDTWFSSALWTFSTLGWPENTDALRQFHPTSVMVSGFDIIFFWIARMIMMTMHFIKDENGKPQVPFHTVYMTGLIRDDEGQKMSKSKGNVIDPLDMVDGISLPELLEKRTGNMMQPQLADKIRKRTEKQFPNGIEPHGTDALRFTLAALASTGRDINWDMKRLEGYRNFCNKLWNASRFVLMNTEGQDCGFNGGEMTLSLADRWILAEFNQTIKAYREALDSFRFDIAAGILYEFTWNQFCDWYLELTKPVMNGGTEAELRGTRHTLVTVLEGLLRLAHPIIPFITETIWQRVKVLCGITADTIMLQPFPQYDASQVDEAALADTEWLKQAIVAVRNIRAEMNIAPGKPLELLLRGCSADAERRVNENRGFLQTLARLESITVLPADNKGPVSVTKIIDGAELLIPMAGLINKEDELARLAKEVAKIEGEISRIENKLANEGFVARAPEAVIAKEREKLEGYAEAKAKLIEQQAVIAAL
>NZ_CP047609.1|WP_016245205.1|4920897_4922094_+|DUF898-domain-containing-protein
MAQVINEMDVPSHSFVFHGTGERYFLICVVNVLLTIITLGIYLPWALMKCKRYLYANMEVNGQRFSYGITGGNVFVSCLVFVFFYFAILMTVSADMPLVGCVLTLSLLVLLIFMAAKGLRYQALMTSLNGVRFSFNCSLKRFWWVTFFLPILMAIGMGAVFFISTKMLHANSSSSVIISVVLMAIVGIVSIGIFNGTLYSLVMSFLWSNTSFGIHRFKVKLDTTYCIKYAILAFLALLPFLAVAGYIIFDQILNAYDSSVYANDDIENLQQFMEMQRKMIIAQLIYYFGIAVSTSYLTVSLRNHFMSNLSLNDGRIRFRSTLTYHGMLYRMCALVVISGITGGLAYPLLKIWMIDWQAKNTYLLGDLDDLPLINKEEQPDKGFLARISRGIMPSLPFL
>NZ_CP047609.1|WP_001059412.1|4920201_4920705_-|GNAT-family-N-acetyltransferase
MNNIAPQSPVMRRLTQQDNPAIARVIRQVSAEYGLTADKGYTVADPNLDELYQVYSQPGHAYWVVEFDGEVVGGGGIAPLAGSESDICELQKMYFLPAIRGKGLAKKLALMAMEQAREMGFKRCYLETTAFLKEAIALYEHLGFEHIDYALGCTGHVDCEVRMLREL
>NZ_CP047609.1|WP_000002953.1|4919739_4920156_+|ribonuclease-E-inhibitor-RraB
MANPEQLEEQREETRLIIEELLEDGSDPDALYTIEHHLSADDLETLEKAAVEAFKLGYEVTDPEELEVEDGDIVICCDILSECALNADLIDAQVEQLMTLAEKFDVEYDGWGTYFEDPNGEDGDDEDFVDEDDDGVRH
>NZ_CP047609.1|WP_000012907.1|4918573_4919578_-|ornithine-carbamoyltransferase
MSGFYHKHFLKLLDFTPAELNSLLQLAAKLKADKKSGKEEAKLTGKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKAFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDVWVSMGEAKEKWAERIALLRDYQVNSKMMQLTGNPEVKFLHCLPAFHDDQTTLGKKMAEEFGLHGGMEVTDEVFESAASIVFDQAENRMHTIKAVMVATLSK
>NZ_CP047609.1|WP_000036448.1|4916922_4918518_+|hypothetical-protein
MSKISDLNYSQHITLADNFKQKSEVLNTWRVGMNNFARNAEGQDNTRNILDPKTFLEFLVKIFTLGYVDFSNRSNEAGRNMMAHIESSSYIKNNDGSEIMKFVMNNPEGERADLSKVEIEITLSTITTMGTRQGHTAIIFQQPDGSTNRYEGKSFERKDESSLHLITNKVLACYQREANKEVALLLNNHQLNWKDAIDYNELLEKPLASTLEKIKKEHLLLMPHVCDDTIPYLLGEGGILEEINGLKTLHDTKIDSGTEGNDEINNIKINLSNILIDSLDDAKINLEKVIDSMLETFFKLPYINDVKILEWCFNQSMQYSDDTTKIKHARSVIDHIDFNCDQSKIAETLFFNLNKEPYKNSPELQELIWEKLVVYVNDFNLSNQEKSRLILRLFDDVKLVFDKVPLSILVNDIFLKDFFMKQPDFAKWYFYQLLKSYEGEQMYLNELGYVYGDEEKTKEIVNKLPGYVVKIFEEKIDNELKIRTRMMEILRDEQINIYEYINEKQLEKLNPQGNLRIAIEKFGWNNKPITA
>NZ_CP047609.1|WP_001326836.1|4916347_4916800_+|toxin-antitoxin-biofilm-protein-TabA
MIIGNIHNLQPWLPQELRQAIEHIKAHVTPETPKGKHDIEGNRLFYLISEDMTEPYEARRAEYHARYLDIQIVLRGQEGMTFSTQPAGTPDTDWLADKDIAFLPEGVDEKTVILNEGDFVVFYPGEVHKPLCAVGAPAQVRKAVVKMLMA
>NZ_CP047609.1|WP_000256681.1|4915609_4916203_+|TetR/AcrR-family-transcriptional-regulator
MVTKKQSRVPGRPRRFAPEQAVSAAKVLFHQKGFDAVSVAEVTDYLGINPPSLYAAFGSKVGLFSRVLNEYVGTEAIPLADILRDDRPVGECLVEVLKEAARRYSQNGGCAGCMVLEGIHSHDPQARDIAVQYYHAAETTIYDYIARRHPQSAQCVTDFMSTVMSGLSAKAREGHSIEQLCATAALAGEAIKTILKE
>NZ_CP047609.1|WP_000500687.1|4914825_4915539_-|SDR-family-oxidoreductase
MGAFTGKTVLILGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAEHLAQETGATAVFTDSADRDAVIDVVRKSGALDILVVNAGIGVFGDALELNADDIDRLFKINIHAPYHASVEAARQMPEGGRILIIGSVNGDRMPVAGMAAYAASKSALQGMARGLARDFGPRGITINVVQPGPIDTDANPANGPMRDMLHSLMAIKRHGQPEEVAGMVAWLAGPEASFVTGAMHTIDGAFGA
>NZ_CP047609.1|WP_029701911.1|4925801_4927313_-|leucyl-aminopeptidase
MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFNVPTRRELTSGERAIQHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMCMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFEPEAVIDVATLTGACVIALGHHITGLMANHNPLAHELIAASEQSGDRAWRLPLGDEYQEQLESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAGTAWRSGKAKGATGRPVALLAQFLLNRAGFNGEE
>NZ_CP047609.1|WP_000584114.1|4927579_4928680_+|LPS-export-ABC-transporter-permease-LptF
MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLWDTVPVRRLRASFSRKGAV
>NZ_CP047609.1|WP_001295681.1|4928679_4929762_+|LPS-export-ABC-transporter-permease-LptG
MQPFGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLHNYVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRKS
>NZ_CP047609.1|WP_021523335.1|4929922_4931425_-|DUF853-domain-containing-protein
MSEPLLIARTPDTELFLLPGMANRHGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVKGDLTGVAQAGTVSEKLLARLKNIGVNDWQPHANPVVVWDIFGEKGHPVRATVSDLGPLLLARLLNLNDVQSGVLNIIFRIADDQGLLLLDFKDLRAITQYIGDNAKSFQNQYGNISSASVGAIQRGLLSLEQQGAAHFFGEPMLDIKDWMRTDANGKGVINILSAEKLYQMPKLYAASLLWMLSELYEQLPEAGDLEKPKLVFFFDETHLLFNDAPQVLLDKIEQVIRLIRSKGVGVWFVSQNPSDIPDNVLGQLGNRVQHALRAFTPKDQKAVKAAAQTMRANPAFDTEKAIQELGTGEALISFLDAKGSPSVVERAMVIAPCSRMGPVTEDERNGLINHSPVYGKYEDEVDRESAYEMLQKGFQASTEQQNNPPAKGKEVAVDDGILGGLKDILFGTTGPRGGKKDGVVQTMAKSAARQVTNQIVRGMLGSLLGGRRR
>NZ_CP047609.1|WP_001309159.1|4931502_4932501_-|DNA-binding-transcriptional-regulator-IdnR
MRNHRISLQDIATLAGVTKMTVSRYIRSPKKVAKETGERIAKIMEEINYIPNRAPGMLLNAQSYTLGILIPSFQNQLFADILAGIESVTSEHNYQTLIANYNYDRDSEEESVINLLSYNIDGIILSEKYHTIRTVKFLRSATIPVVELMDVQGERLDMEVGFDNRQAAFDMVCTMLEKRVRHKILYLGSKDDTRDEQRYQGYCDAMMLHNLSPLRMNPRAISSIHLGMQLMRDALSANPDLDGVFCTNDDIAMGALLLCRERNLAVPEQISIAGFHGLEIGRQMIPSLASVITPRFDIGRMAAQMLLSKIKNNDHNHNTVDLGYQIYHGNTL
>NZ_CP047609.1|WP_001128347.1|4932567_4933887_-|gnt-II-system-L-idonate-transporter
MPLIIIAAGVALLLILMIVFKVNGFIALVLVAAVVGFAEGMDAQAVLHSIQNGIGSTLGGLAMILGFGAMLGKLISDTGAAQRIATTLIATFGKKRVQWALVITGLVVGLAMFFEVGFVLLLPLVFTIVASSGLPLLYVGVPMVAALSVTHCFLPPHPGPTAIATIFEANLGTTLLYGFIITIPTVIVAGPLFSKLLTRFEKAPPEGLFNPHLFSEEEMPSFWNSIFAAVIPVILMAIAAVCEITLPKTNTVRLFFEFVGNPAVALFIAIVIAIFTLGRRNGRTIEQIMDIIGDSIGAIAMIVFIIAGGGAFKQVLVDSGVGHYISHLMTGTTLSPLLMCWTVAALLRIALGSATVAAITTAGVVLPIINVTHADPALMVLATGAGSVIASHVNDPGFWLFKGYFNLTVGETLRTWTVMETLISIMGLLGVLAINAVLH
>NZ_CP047609.1|WP_000998695.1|4933949_4934714_-|gluconate-5-dehydrogenase
MNDLFSLAGKNILITGSAQGIGFLLATGLGKYGAQIIINDITAERAELAVEKLHQEGIQAVAAPFNVTHKHEIDAAVEHIEKDIGPIDVLVNNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVTRHMVERKAGKVINICSMQSELGRDTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVEDEAFTAWLCKRTPAARWGDPQELIGAAVFLSSKASDFVNGHLLFVDGGMLVAV
>NZ_CP047609.1|WP_001197411.1|4934737_4935769_-|L-idonate-5-dehydrogenase
MQVKTQSCVVAGKKTVAVTEQTIDWNNNGTLVQITRGGICGSDLHYYQEGKVGNFMIKAPMVLGHEVIGKVIHSDSSELHEGQTVAINPSKPCGHCKYCIEHNENQCTDMRFFGSAMYFPHVDGGFTRYKMVETSQCVPYPAKADEKVMAFAEPLAVAIHAAHQAGELQGKRVFISGVGPIGCLIVSAVKTLGAAEIVCADVSPRSLSLGKEMGADVLVNPQNDDMDHWKAEKGYFDVSFEVSGHPSSVNTCLEVTRARGVMVQVGMGGAMAEFPMMTLIGKEISLRGSFRFTSEFNTAVSWLANGVINPLPLLSAEYPFTDLEEALRFAGDKTQAAKVQLVF
>NZ_CP047609.1|WP_000896738.1|4935985_4936549_+|gluconokinase
MAGESFILMGVSGSGKTLIGSKVAALLSAKFIDGDDLHPAKNIDKMSQGIPLSDEDRLPWLERLNDASYSLYKKNETGFIVCSSLKKQYRDILRKGSPHVHFLWLDGDYETILARMQRRAGHFMPVALLKSQFEALERPQADEQDIVRIDINHDIANVTEQCRQAVLAIRQNRICAKEGSASDQRCE
>NZ_CP047609.1|WP_001318460.1|4936552_4937572_-|NADPH-dependent-aldehyde-reductase-Ahr
MSMIKSYAAKEAGGELEVYEYDPGELRPQDVEVQVDYCGICHSDLSMIDNEWGFSQYPLVAGHEVIGRVVALGSAAQDKGLQVGQRVGIGWTARSCGHCDACISGNQINCEQGAVPTIMNRGGFAEKLRADWQWVIPLPENIDIESAGPLLCGGITVFKPLLMHHITATSRVGVIGIGGLGHIAIKLLHAMGCEVTAFSSNPAKEQEVLAMGADKVVNSRDPQALKALAGQFDLIINTVNVSLDWQPYFEALTYGGNFHTVGAVLTPLSVPAFTLIAGDRSVSGSATGTPYELRKLMRFAARSKVAPTTELFPMSKINDAIQHVRDGKARYRVVLKADY

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP047609_1	1.6\|3154915\|32\|NZ_CP047609\|PILER-CR	3154915-3154946	32	NZ_CP037443	Klebsiella sp. PO552 plasmid p2, complete sequence	42679-42710	1	0.969
NZ_CP047609_1	1.15\|3154915\|35\|NZ_CP047609\|CRISPRCasFinder,CRT	3154915-3154949	35	NZ_CP037443	Klebsiella sp. PO552 plasmid p2, complete sequence	42676-42710	2	0.943
NZ_CP047609_2	2.3\|3182447\|32\|NZ_CP047609\|CRISPRCasFinder,CRT,PILER-CR	3182447-3182478	32	NC_016040	Sulfobacillus thermotolerans strain Y0017 plasmid pY0017, complete sequence	37866-37897	6	0.812
NZ_CP047609_1	1.3\|3154732\|32\|NZ_CP047609\|PILER-CR	3154732-3154763	32	MT110073	Stenotrophomonas phage vB_SmaS_DLP_3, complete genome	39410-39441	7	0.781
NZ_CP047609_1	1.2\|3154671\|32\|NZ_CP047609\|PILER-CR	3154671-3154702	32	NZ_CP044084	Pseudomonas luteola strain FDAARGOS_637 plasmid unnamed1, complete sequence	347859-347890	8	0.75
NZ_CP047609_1	1.5\|3154854\|32\|NZ_CP047609\|PILER-CR	3154854-3154885	32	KC847113	Bacillus phage PBP180, complete sequence	100-131	8	0.75
NZ_CP047609_2	2.2\|3182386\|32\|NZ_CP047609\|CRISPRCasFinder,CRT,PILER-CR	3182386-3182417	32	MN855878	Bacteriophage sp. isolate 336, complete genome	5171-5202	8	0.75
NZ_CP047609_2	2.5\|3182569\|32\|NZ_CP047609\|CRISPRCasFinder,CRT,PILER-CR	3182569-3182600	32	NZ_CP045381	Labrenzia sp. THAF35 plasmid pTHAF35_a, complete sequence	107507-107538	8	0.75
NZ_CP047609_2	2.5\|3182569\|32\|NZ_CP047609\|CRISPRCasFinder,CRT,PILER-CR	3182569-3182600	32	NZ_CP019631	Labrenzia aggregata strain RMAR6-6 plasmid unnamed1, complete sequence	199281-199312	8	0.75
NZ_CP047609_1	1.1\|3154610\|32\|NZ_CP047609\|PILER-CR	3154610-3154641	32	NZ_CP016293	Rhizobium leguminosarum strain Vaf10 plasmid unnamed5, complete sequence	11267-11298	9	0.719
NZ_CP047609_1	1.5\|3154854\|32\|NZ_CP047609\|PILER-CR	3154854-3154885	32	NZ_CP038863	Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence	20152-20183	9	0.719
NZ_CP047609_1	1.5\|3154854\|32\|NZ_CP047609\|PILER-CR	3154854-3154885	32	NC_049837	Klebsiella phage vB_KpnS_Alina, complete genome	13583-13614	9	0.719
NZ_CP047609_1	1.6\|3154915\|32\|NZ_CP047609\|PILER-CR	3154915-3154946	32	NZ_CP019063	Rahnella sp. ERMR1:05 plasmid unnamed1, complete sequence	287201-287232	9	0.719
NZ_CP047609_1	1.5\|3154854\|32\|NZ_CP047609\|PILER-CR	3154854-3154885	32	MN480762	Streptococcus salivarius strain NU10 plasmid pSsal-NU10, complete sequence	179050-179081	10	0.688
NZ_CP047609_1	1.14\|3154854\|35\|NZ_CP047609\|CRISPRCasFinder,CRT	3154854-3154888	35	NZ_CP038863	Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence	20152-20186	12	0.657

1. spacer 1.6|3154915|32|NZ_CP047609|PILER-CR matches to NZ_CP037443 (Klebsiella sp. PO552 plasmid p2, complete sequence) position: , mismatch: 1, identity: 0.969

atgagattaaaatactcagtactcttactcgc	CRISPR spacer
atgagattaaaatactcagcactcttactcgc	Protospacer
*******************.************

2. spacer 1.15|3154915|35|NZ_CP047609|CRISPRCasFinder,CRT matches to NZ_CP037443 (Klebsiella sp. PO552 plasmid p2, complete sequence) position: , mismatch: 2, identity: 0.943

atgagattaaaatactcagtactcttactcgccga	CRISPR spacer
atgagattaaaatactcagcactcttactcgccgt	Protospacer
*******************.**************

3. spacer 2.3|3182447|32|NZ_CP047609|CRISPRCasFinder,CRT,PILER-CR matches to NC_016040 (Sulfobacillus thermotolerans strain Y0017 plasmid pY0017, complete sequence) position: , mismatch: 6, identity: 0.812

gagagcgaggggagattccggcagggcgtgca	CRISPR spacer
aatcgtgaggggatcttccggcagggcgtgca	Protospacer
.*  *.*******  *****************

4. spacer 1.3|3154732|32|NZ_CP047609|PILER-CR matches to MT110073 (Stenotrophomonas phage vB_SmaS_DLP_3, complete genome) position: , mismatch: 7, identity: 0.781

gatcgcctgctccagcgtcactccctgcccct	CRISPR spacer
gttcgcctgctccagcgtcaatgccccctccc	Protospacer
* ****************** * **. *.**.

5. spacer 1.2|3154671|32|NZ_CP047609|PILER-CR matches to NZ_CP044084 (Pseudomonas luteola strain FDAARGOS_637 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

gttgaggtcgataagtacgaacggtttccctg	CRISPR spacer
gaagaggtcgatgagtacgaatggttacagcg	Protospacer
*  *********.********.**** *  .*

6. spacer 1.5|3154854|32|NZ_CP047609|PILER-CR matches to KC847113 (Bacillus phage PBP180, complete sequence) position: , mismatch: 8, identity: 0.75

taacccccaatgaagttaataaagtctatggc	CRISPR spacer
ttctctctaatgtagttaataaagtcgatggt	Protospacer
*  .*.*.**** ************* ****.

7. spacer 2.2|3182386|32|NZ_CP047609|CRISPRCasFinder,CRT,PILER-CR matches to MN855878 (Bacteriophage sp. isolate 336, complete genome) position: , mismatch: 8, identity: 0.75

taatatccc----tggcgataatcaaccggcttact	CRISPR spacer
----acgccatggtggcgataatcatcctgcttact	Protospacer
    *. **    ************ ** *******

8. spacer 2.5|3182569|32|NZ_CP047609|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP045381 (Labrenzia sp. THAF35 plasmid pTHAF35_a, complete sequence) position: , mismatch: 8, identity: 0.75

aaggtcgcggggacgccacgggcagtcaatgt	CRISPR spacer
gatttcgctgggaccccacgggcagtcgacgg	Protospacer
.*  **** ***** ************.*.*

9. spacer 2.5|3182569|32|NZ_CP047609|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP019631 (Labrenzia aggregata strain RMAR6-6 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

aaggtcgcggggacgccacgggcagtcaatgt	CRISPR spacer
gatttcgctgggaccccacgggcagtcgacgg	Protospacer
.*  **** ***** ************.*.*

10. spacer 1.1|3154610|32|NZ_CP047609|PILER-CR matches to NZ_CP016293 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed5, complete sequence) position: , mismatch: 9, identity: 0.719

gtcaataggcggcgtcccgtagccgtcccctt	CRISPR spacer
gtgctctggcggcgtgccgtagccatccccga	Protospacer
**   . ******** ********.*****

11. spacer 1.5|3154854|32|NZ_CP047609|PILER-CR matches to NZ_CP038863 (Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

taacccccaatgaagttaataaagtctatggc	CRISPR spacer
ctttaggcaatgaagttaaaaaattctatggc	Protospacer
.  .   ************ *** ********

12. spacer 1.5|3154854|32|NZ_CP047609|PILER-CR matches to NC_049837 (Klebsiella phage vB_KpnS_Alina, complete genome) position: , mismatch: 9, identity: 0.719

taacccccaatgaagttaataaagtctatggc	CRISPR spacer
acattggcgatgaagttaataacgtgtatggc	Protospacer
  *..  *.************* ** ******

13. spacer 1.6|3154915|32|NZ_CP047609|PILER-CR matches to NZ_CP019063 (Rahnella sp. ERMR1:05 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

atgagattaaaatactcagtactcttactcgc	CRISPR spacer
cgggaattaacatactcggtactcttaccgtc	Protospacer
  *..***** ******.**********.  *

14. spacer 1.5|3154854|32|NZ_CP047609|PILER-CR matches to MN480762 (Streptococcus salivarius strain NU10 plasmid pSsal-NU10, complete sequence) position: , mismatch: 10, identity: 0.688

taacccccaatgaagttaataaagtctatggc	CRISPR spacer
gtagattcaatgaagttaataaaaactatgat	Protospacer
  *  ..****************. *****..

15. spacer 1.14|3154854|35|NZ_CP047609|CRISPRCasFinder,CRT matches to NZ_CP038863 (Campylobacter jejuni strain SCJK2 plasmid unnamed1, complete sequence) position: , mismatch: 12, identity: 0.657

taacccccaatgaagttaataaagtctatggccga	CRISPR spacer
ctttaggcaatgaagttaaaaaattctatggcgat	Protospacer
.  .   ************ *** ******** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

54930 : 119723

Bacillus_phage(40.0%)

protease,transposase,plate,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001520514.1\|54930_56355_+\|protease	serine endoprotease DegP	A0A1B1IT49	uncultured_Mediterranean_phage	2.5e-26	28.8
WP_000929439.1\|56509_57667_+	DNA-binding transcriptional regulator CdaR	NA	NA	NA	NA
WP_000272188.1\|57720_58107_-	DUF3461 family protein	NA	NA	NA	NA
WP_001186656.1\|58420_59245_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA
WP_021523000.1\|59275_61948_-	bifunctional uridylyltransferase/uridylyl-removing protein GlnD	NA	NA	NA	NA
WP_001018194.1\|62009_62804_-	type I methionyl aminopeptidase	NA	NA	NA	NA
WP_000246882.1\|63171_63897_+	30S ribosomal protein S2	NA	NA	NA	NA
WP_000818114.1\|64154_65006_+	elongation factor Ts	NA	NA	NA	NA
WP_000224573.1\|65152_65878_+	UMP kinase	NA	NA	NA	NA
WP_000622418.1\|66169_66727_+	ribosome recycling factor	NA	NA	NA	NA
WP_001589702.1\|66818_68015_+	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA
WP_001520518.1\|68203_68962_+	(2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase	R9W0U9	Flavobacterium_phage	7.7e-27	44.4
WP_020233386.1\|68974_69832_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_001520521.1\|69843_71196_+\|protease	sigma E protease regulator RseP	NA	NA	NA	NA
WP_001240896.1\|71225_73658_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_000758956.1\|73779_74265_+	molecular chaperone Skp	NA	NA	NA	NA
WP_001139282.1\|74268_75294_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_000210739.1\|75398_75854_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_000565966.1\|75857_76646_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_000139675.1\|76645_77794_+	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_000569434.1\|77790_78387_+	ribonuclease HII	V5LS49	Emiliania_huxleyi_virus	2.3e-26	40.0
WP_001520523.1\|78423_81906_+	DNA polymerase III subunit alpha	Q8W6C3	Saccharomonospora_phage	1.7e-209	37.0
WP_000055748.1\|81918_82878_+	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA
WP_001020973.1\|82975_85117_+	lysine decarboxylase LdcC	NA	NA	NA	NA
WP_000901098.1\|85173_85563_+	VOC family protein	NA	NA	NA	NA
WP_001520525.1\|85627_86926_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_000062315.1\|86974_87235_-	Rho-binding antiterminator	NA	NA	NA	NA
WP_000417058.1\|87221_87422_-	YaeP family protein	NA	NA	NA	NA
WP_001185283.1\|87587_88133_+	YaeQ family protein	NA	NA	NA	NA
WP_000635534.1\|88129_88552_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_001520527.1\|88565_89276_+	envelope stress response activation lipoprotein NlpE	NA	NA	NA	NA
WP_100222095.1\|90359_91708_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.0e-74	52.4
WP_001695489.1\|91861_93046_-	MFS transporter AraJ	NA	NA	NA	NA
WP_172986626.1\|93171_96315_-	exonuclease subunit SbcC	G3MAB6	Bacillus_virus	5.8e-12	26.9
WP_001521994.1\|96311_97514_-	exonuclease subunit SbcD	R4JGS2	Bacillus_phage	2.4e-06	32.4
WP_000113933.1\|97703_98393_+	phosphate response regulator transcription factor PhoB	W8CYM9	Bacillus_phage	4.4e-37	38.0
WP_000893603.1\|98450_99746_+	phosphate regulon sensor histidine kinase PhoR	W8CYF6	Bacillus_phage	1.3e-26	30.8
WP_001086163.1\|100098_100884_+	hypothetical protein	NA	NA	NA	NA
WP_001521857.1\|101032_101500_-	hypothetical protein	NA	NA	NA	NA
WP_000908071.1\|101509_102424_-	hypothetical protein	NA	NA	NA	NA
WP_000002621.1\|102467_102950_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_001087587.1\|102973_104326_-	type VI secretion system ImpA family N-terminal domain-containing protein	NA	NA	NA	NA
WP_122452236.1\|104336_107771_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA
WP_001240537.1\|107879_109292_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_000088867.1\|109296_110040_-	type VI secretion system-associated protein TagO	NA	NA	NA	NA
WP_172986627.1\|110036_112892_-	AAA family ATPase	A0A1C3S747	Escherichia_phage	8.6e-79	29.3
WP_001521863.1\|112900_113662_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_000246418.1\|113666_114998_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_001080149.1\|115000_115525_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_001550643.1\|115521_116802_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA
WP_000348804.1\|116826_117909_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_001521865.1\|117872_119723_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA

DBSCAN-SWA_2

814622 : 912914

Escherichia_phage(38.98%)

holin,terminase,integrase,capsid,head,lysis,tRNA,tail,portal,protease,plate

attL 827809:827824|attR 865880:865895

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000520781.1\|814622_814943_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.6e-13	44.4
WP_000934041.1\|814973_817250_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.9e-166	42.5
WP_001040187.1\|817955_818174_-	translation initiation factor IF-1	NA	NA	NA	NA
WP_001241678.1\|818458_819163_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_172986630.1\|819204_820926_-	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	W8CYL7	Bacillus_phage	2.2e-21	25.2
WP_001043595.1\|820926_822693_-	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	W8CYL7	Bacillus_phage	7.0e-23	24.3
WP_001522752.1\|822815_823781_-	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	1.1e-62	44.6
WP_000228473.1\|824325_824820_+	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_001522753.1\|824954_829022_+	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	1.2e-86	48.7
827809:827824	attL	NA	NA	NA	NA
WP_001522754.1\|829180_829792_+	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_000067755.1\|829802_831146_+	replication-associated recombination protein RarA	G3MBE0	Bacillus_virus	2.1e-80	40.8
WP_000886683.1\|831236_832529_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.5e-94	48.2
WP_000850305.1\|832767_835212_+	dimethylsulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	5.0e-221	49.8
WP_000213098.1\|835222_835840_+	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	5.0e-77	60.6
WP_000534633.1\|835841_836705_+	dimethyl sulfoxide reductase anchor subunit DmsC	NA	NA	NA	NA
WP_001522756.1\|836740_837367_-	hydrolase	NA	NA	NA	NA
WP_000109288.1\|837681_838830_+	MFS transporter	NA	NA	NA	NA
WP_000918505.1\|839039_840470_+	amino acid permease	NA	NA	NA	NA
WP_000067977.1\|840679_841477_-	pyruvate formate lyase 1-activating protein	A0A2P0VNQ0	Tetraselmis_virus	1.3e-21	26.6
WP_000023391.1\|841508_842504_-\|integrase	tyrosine-type recombinase/integrase	A0A0F7LBR0	Escherichia_phage	7.1e-190	99.7
WP_000072552.1\|842597_842909_-	helix-turn-helix transcriptional regulator	Q1JS25	Enterobacteria_phage	4.3e-53	100.0
WP_000022051.1\|843013_843370_+	hypothetical protein	A0A0F7LDH4	Escherichia_phage	1.1e-63	100.0
WP_001005162.1\|843380_843551_+	hypothetical protein	S4TNZ7	Salmonella_phage	6.1e-25	100.0
WP_000217677.1\|843547_844048_+	hypothetical protein	A0A0F7LBQ6	Escherichia_phage	4.5e-92	100.0
WP_000557703.1\|844112_844337_+	DUF2732 family protein	S4TP68	Salmonella_phage	4.7e-33	100.0
WP_001277957.1\|844336_844639_+	DUF5405 family protein	A0A0F7LDT6	Escherichia_phage	2.2e-46	99.0
WP_023148842.1\|844638_844863_+	TraR/DksA family transcriptional regulator	A0A0F7LDI3	Escherichia_phage	5.0e-35	98.6
WP_000027664.1\|844859_845135_+	DUF5405 family protein	U5N3W1	Enterobacteria_phage	3.8e-45	100.0
WP_023148841.1\|845124_847413_+	replication endonuclease	A0A0F7LBQ2	Escherichia_phage	0.0e+00	97.2
WP_001754918.1\|847829_847985_+	hypothetical protein	NA	NA	NA	NA
WP_016239054.1\|848021_848342_+	helix-turn-helix transcriptional regulator	E5E3S9	Burkholderia_phage	5.9e-13	38.7
WP_023148839.1\|848307_849258_+	RNA-directed DNA polymerase	E5E3S8	Burkholderia_phage	4.6e-37	40.8
WP_023148838.1\|849366_850731_-	FRG domain-containing protein	Q9AZ51	Lactococcus_phage	6.7e-05	34.1
WP_048219351.1\|851243_852278_-\|portal	phage portal protein	Q858W8	Yersinia_virus	7.1e-201	99.4
WP_000156861.1\|852277_854050_-\|terminase	terminase ATPase subunit family protein	A0A0F7LCK3	Escherichia_phage	0.0e+00	99.8
WP_001085952.1\|854223_855078_+\|capsid	GPO family capsid scaffolding protein	Q778Z1	Enterobacteria_phage	8.6e-136	99.3
WP_023148837.1\|855132_856206_+\|capsid	phage major capsid protein, P2 family	Q778Y7	Enterobacteria_phage	7.4e-201	99.2
WP_001605750.1\|856209_856953_+\|terminase	terminase endonuclease subunit	A0A0F7LBP7	Escherichia_phage	1.9e-123	98.0
WP_033559479.1\|857052_857562_+\|head	head completion/stabilization protein	U5N0S3	Enterobacteria_phage	7.3e-90	98.8
WP_000846409.1\|857561_857765_+\|tail	tail protein X	A0A0F7LCN2	Escherichia_phage	3.0e-31	100.0
WP_000123123.1\|857768_858050_+\|holin	phage holin family protein	A0A0F7LA12	Escherichia_phage	1.3e-43	100.0
WP_023148834.1\|858049_858547_+	glycoside hydrolase family 104 protein	A0A0F7LBS0	Escherichia_phage	1.2e-92	99.4
WP_000736597.1\|858561_858987_+	hypothetical protein	A0A0F7LBP4	Escherichia_phage	4.7e-58	95.0
WP_032152948.1\|858974_859400_+\|lysis	LysB family phage lysis regulatory protein	Q858W0	Yersinia_virus	1.4e-65	96.5
WP_001440152.1\|859371_859545_+	hypothetical protein	Q7Y4E1	Escherichia_virus	2.3e-24	96.5
WP_001774102.1\|859507_859975_+\|tail	phage tail protein	Q7Y4E0	Escherichia_virus	9.7e-81	98.1
WP_023148832.1\|859967_860420_+	phage virion morphogenesis protein	A0A0F7LDR6	Escherichia_phage	2.4e-76	99.3
WP_023148831.1\|860522_861596_-	hypothetical protein	NA	NA	NA	NA
WP_033560515.1\|861682_862312_+\|plate	phage baseplate assembly protein V	U5N3F0	Enterobacteria_phage	1.1e-108	96.6
WP_000127164.1\|862308_862656_+	GPW/gp25 family protein	A0A0F7LDQ1	Escherichia_phage	1.3e-58	100.0
WP_001121453.1\|862660_863569_+\|plate	baseplate assembly protein	U5N3T9	Enterobacteria_phage	4.4e-162	99.7
WP_001285325.1\|863561_864092_+\|tail	phage tail protein I	U5N0U8	Enterobacteria_phage	2.3e-102	100.0
WP_023148827.1\|864102_866127_+\|tail	phage tail protein	A0A0A7NV63	Enterobacteria_phage	6.5e-299	71.9
865880:865895	attR	NA	NA	NA	NA
WP_023148826.1\|866128_866656_+\|tail	tail fiber assembly protein	A0A0C4UR05	Shigella_phage	8.3e-89	92.6
WP_023148825.1\|866946_868173_+	DUF4263 domain-containing protein	Q858S8	Enterobacteria_phage	1.1e-181	99.4
WP_020233495.1\|868459_869650_+\|tail	phage tail sheath protein	A0A0F7LBW9	Escherichia_phage	9.0e-224	99.2
WP_001251408.1\|869662_870181_+\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	1.4e-93	100.0
WP_001031303.1\|870237_870513_+\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	5.7e-41	100.0
WP_000785970.1\|870545_870665_+\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	1.0e-15	100.0
WP_021523174.1\|870657_873105_+\|tail	phage tail tape measure protein	M1T2S3	Escherichia_phage	0.0e+00	95.7
WP_001565024.1\|873119_873599_+\|tail	phage tail protein	O64315	Escherichia_phage	9.6e-84	98.1
WP_033559748.1\|873598_874762_+	phage late control D family protein	U5N3V4	Enterobacteria_phage	8.3e-206	99.5
WP_000468308.1\|874844_875063_+	prophage transcriptional regulator OgrK	A0A0F7LDQ9	Escherichia_phage	4.7e-38	100.0
WP_001292809.1\|875382_877665_-	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	1.3e-162	41.4
WP_000642546.1\|877719_878577_-	formate transporter FocA	NA	NA	NA	NA
WP_001328457.1\|878982_880743_-	YcaO-like family protein	NA	NA	NA	NA
WP_000642852.1\|880872_881565_+	DUF421 domain-containing protein	NA	NA	NA	NA
WP_000057149.1\|881763_882852_+	3-phosphoserine/phosphohydroxythreonine transaminase	M1Q1P2	Streptococcus_phage	3.5e-81	46.8
WP_001522761.1\|882922_884206_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_001313710.1\|884375_885140_+	metallopeptidase YcaL	NA	NA	NA	NA
WP_001522762.1\|885312_885996_+	(d)CMP kinase	NA	NA	NA	NA
WP_000140327.1\|886106_887780_+	30S ribosomal protein S1	NA	NA	NA	NA
WP_000167336.1\|887939_888224_+	integration host factor subunit beta	A7KV42	Bacillus_phage	3.2e-10	40.2
WP_021523053.1\|888430_890695_+	ComEC family protein	NA	NA	NA	NA
WP_000551270.1\|890731_892480_+	lipid A ABC transporter ATP-binding protein/permease MsbA	W8CYL7	Bacillus_phage	2.5e-57	29.8
WP_000570527.1\|892476_893463_+	tetraacyldisaccharide 4'-kinase	NA	NA	NA	NA
WP_001522765.1\|893499_894732_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000350058.1\|894783_894966_+	protein YcaR	NA	NA	NA	NA
WP_021523054.1\|894962_895709_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA
WP_000436922.1\|895862_896756_+	YcbJ family phosphotransferase	NA	NA	NA	NA
WP_001522767.1\|896732_897512_-	envelope biogenesis factor ElyC	NA	NA	NA	NA
WP_001298300.1\|897647_898433_+\|tRNA	tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM	NA	NA	NA	NA
WP_001288850.1\|898429_899752_+	chromosome partition protein MukF	NA	NA	NA	NA
WP_001295931.1\|899732_900437_+	chromosome partition protein MukE	NA	NA	NA	NA
WP_021523055.1\|900436_904897_+	chromosome partition protein MukB	NA	NA	NA	NA
WP_020232980.1\|905157_907005_+	L,D-transpeptidase	NA	NA	NA	NA
WP_001295932.1\|907185_907734_+	YcbK family protein	A0A0K1LKR7	Rhodobacter_phage	7.0e-06	33.7
WP_001109449.1\|907760_908408_+	hydroxyacylglutathione hydrolase GloC	NA	NA	NA	NA
WP_000462687.1\|908458_909649_-	aspartate transaminase	NA	NA	NA	NA
WP_000117881.1\|911513_912914_-\|tRNA	asparagine--tRNA ligase	A0A2K9V902	Bandra_megavirus	5.3e-82	36.1

DBSCAN-SWA_3

1084031 : 1160229

Escherichia_phage(36.21%)

holin,terminase,integrase,head,capsid,transposase,lysis,tRNA,tail,portal

attL 1085159:1085174|attR 1129867:1129882

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000526135.1\|1084031_1084490_+\|transposase	IS200/IS605 family transposase	NA	NA	NA	NA
WP_001300895.1\|1084611_1085574_-	L,D-transpeptidase LdtC	NA	NA	NA	NA
1085159:1085174	attL	NA	NA	NA	NA
WP_024166502.1\|1085717_1089164_-	transcription-repair coupling factor	NA	NA	NA	NA
WP_001522877.1\|1089291_1090365_-	acyltransferase family protein	NA	NA	NA	NA
WP_000284714.1\|1090625_1091825_+	lipoprotein-releasing ABC transporter permease subunit LolC	NA	NA	NA	NA
WP_001033689.1\|1091817_1092519_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	G9BWD6	Planktothrix_phage	5.4e-35	39.8
WP_001251363.1\|1092518_1093763_+	lipoprotein-releasing ABC transporter permease subunit LolE	NA	NA	NA	NA
WP_000291248.1\|1093791_1094703_+	N-acetylglucosamine kinase	NA	NA	NA	NA
WP_000952736.1\|1094718_1095540_+	NAD-dependent protein deacylase	A0A2I7S9Y2	Vibrio_phage	5.6e-23	35.6
WP_000720604.1\|1095676_1096462_-	hypothetical protein	NA	NA	NA	NA
WP_001522885.1\|1096458_1096920_-	DUF3592 domain-containing protein	NA	NA	NA	NA
WP_000759309.1\|1096977_1098024_-	spermidine/putrescine ABC transporter substrate-binding protein PotD	NA	NA	NA	NA
WP_000580316.1\|1098020_1098815_-	spermidine/putrescine ABC transporter permease PotC	NA	NA	NA	NA
WP_000074983.1\|1098981_1100100_-\|integrase	phage integrase Arm DNA-binding domain-containing protein	Q77Z04	Phage_21	7.7e-84	44.2
WP_000003742.1\|1100068_1100338_-	excisionase	NA	NA	NA	NA
WP_001542183.1\|1100399_1102856_-	exonuclease	V5UQJ3	Shigella_phage	2.5e-103	42.6
WP_001093951.1\|1102933_1103137_-	DUF1482 family protein	NA	NA	NA	NA
WP_000450218.1\|1103133_1103322_-	cell division inhibitor	NA	NA	NA	NA
WP_000935596.1\|1103332_1104187_-	Rha family phage regulatory protein	A0A0P0ZE80	Stx2-converting_phage	3.6e-65	63.2
WP_000394557.1\|1104717_1105092_-	hypothetical protein	NA	NA	NA	NA
WP_000379564.1\|1105103_1105256_-	DUF1391 family protein	NA	NA	NA	NA
WP_000787428.1\|1105462_1105870_-	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	9.8e-29	49.6
WP_000912294.1\|1105946_1106174_+	transcriptional regulator	NA	NA	NA	NA
WP_000705383.1\|1106157_1106709_+	hypothetical protein	NA	NA	NA	NA
WP_000020541.1\|1106680_1107721_+	DNA-binding protein	A0A0U2RT81	Escherichia_phage	1.0e-90	87.2
WP_001309414.1\|1107632_1108175_+	hypothetical protein	A0A0U2JGJ0	Escherichia_phage	3.6e-79	90.2
WP_000450706.1\|1108208_1108979_+	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	1.1e-86	68.4
WP_001141099.1\|1108994_1109387_+	DUF977 family protein	A0A088CBK9	Shigella_phage	1.5e-39	63.3
WP_001266130.1\|1109383_1109680_+	DUF4406 domain-containing protein	A0A0U2SAZ1	Escherichia_phage	1.2e-47	95.8
WP_001209475.1\|1109676_1110138_+	ead/Ea22-like family protein	Q8VNQ2	Enterobacteria_phage	2.6e-38	94.0
WP_000403791.1\|1110115_1110472_+	hypothetical protein	A0A2R2Z307	Escherichia_phage	1.1e-57	98.3
WP_000137948.1\|1110567_1110975_+	hypothetical protein	A0A0N7KZJ2	Stx2-converting_phage	1.0e-22	60.4
WP_001229301.1\|1110976_1111342_+	HNH endonuclease	A0A2R2Z2X9	Escherichia_phage	1.9e-68	99.2
WP_000208092.1\|1111338_1112325_+	hypothetical protein	Q1MVF7	Enterobacteria_phage	1.8e-44	41.5
WP_000813254.1\|1112883_1113039_+	type I toxin-antitoxin system toxin HokD	A0A0U2QV81	Escherichia_phage	1.5e-17	96.1
WP_001309416.1\|1113255_1113507_+	hypothetical protein	NA	NA	NA	NA
WP_001309417.1\|1113573_1113852_+	hypothetical protein	I6PCV7	Cronobacter_phage	6.3e-11	45.3
WP_001265256.1\|1113853_1114912_+	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.8e-90	48.3
WP_000140038.1\|1114912_1115281_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	2.4e-34	62.8
WP_001064909.1\|1115273_1115963_+	antiterminator	I6PDF8	Cronobacter_phage	7.1e-56	48.1
WP_001309418.1\|1116175_1116373_+	hypothetical protein	S5MQK8	Escherichia_phage	1.7e-26	93.8
WP_157835956.1\|1116348_1116462_+	DUF3927 family protein	NA	NA	NA	NA
WP_000871291.1\|1116742_1117078_-	anti-adapter protein IraM	Q8HAJ1	Enterobacteria_phage	5.2e-44	74.8
WP_001309419.1\|1117323_1117527_+	DUF1737 domain-containing protein	H6WZJ9	Escherichia_phage	2.7e-27	96.8
WP_001309421.1\|1117523_1117685_+	hypothetical protein	Q08JA2	Stx2-converting_phage	1.6e-14	89.1
WP_000284506.1\|1117834_1118050_+\|holin	class II holin family protein	Q9ZWW2	Enterobacteria_phage	6.9e-34	100.0
WP_001037014.1\|1118054_1118945_+	YdfR family protein	Q08JA0	Stx2-converting_phage	2.1e-108	70.9
WP_001092866.1\|1118981_1119515_+	lysozyme	Q6H9V6	Enterobacteria_phage	6.7e-102	97.2
WP_001446668.1\|1119671_1119854_+	hypothetical protein	NA	NA	NA	NA
WP_001280932.1\|1119868_1120000_+	hypothetical protein	A0A0P0ZG36	Escherichia_phage	2.6e-07	79.1
WP_032142285.1\|1120002_1120470_+\|lysis	lysis protein	Q6H9V3	Enterobacteria_phage	6.7e-66	84.4
WP_000830178.1\|1120780_1121107_+	TonB family protein	H6WZK5	Escherichia_phage	3.7e-39	72.2
WP_001322427.1\|1121229_1121583_-	hypothetical protein	NA	NA	NA	NA
WP_000235436.1\|1122065_1122575_+\|terminase	terminase small subunit	A0A1I9KFT4	Aeromonas_phage	1.6e-12	32.7
WP_001309424.1\|1122546_1124475_+\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	1.4e-261	66.4
WP_000258993.1\|1124458_1124665_+\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	3.0e-10	55.4
WP_001322425.1\|1124661_1126254_+\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	4.9e-185	61.1
WP_001253888.1\|1126243_1127749_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	1.0e-99	53.1
WP_000256814.1\|1127785_1128133_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	6.8e-23	59.1
WP_029702099.1\|1128190_1129219_+\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	4.1e-116	61.9
WP_000201530.1\|1129270_1129645_+	hypothetical protein	NA	NA	NA	NA
WP_001204533.1\|1129637_1129991_+\|tail	tail attachment protein	A0A0K2FJB7	Enterobacteria_phage	1.9e-41	70.1
1129867:1129882	attR	NA	NA	NA	NA
WP_000975005.1\|1130006_1130582_+\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	1.6e-48	56.8
WP_000683079.1\|1130578_1130974_+\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	1.5e-58	82.4
WP_000235111.1\|1130981_1131734_+\|tail	phage tail protein	Q687F6	Enterobacteria_phage	2.7e-133	98.0
WP_000479111.1\|1131747_1132179_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	1.8e-41	68.1
WP_000533402.1\|1132205_1132619_+\|tail	phage tail assembly protein T	S5MDP5	Escherichia_phage	1.6e-42	82.2
WP_000082417.1\|1132599_1135161_+\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	87.5
WP_000847298.1\|1135157_1135487_+\|tail	phage tail protein	Q687F2	Enterobacteria_phage	4.3e-59	100.0
WP_001328631.1\|1135486_1136185_+\|tail	phage minor tail protein L	H6WZM3	Escherichia_phage	3.2e-128	97.0
WP_000194723.1\|1136195_1136939_+\|tail	phage tail protein	Q6H9T4	Enterobacteria_phage	5.0e-148	98.0
WP_032300536.1\|1136884_1137517_+\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	4.2e-103	91.8
WP_000514726.1\|1137860_1141553_+	DUF1983 domain-containing protein	A0A0P0ZCI5	Stx2-converting_phage	0.0e+00	86.0
WP_000608644.1\|1141788_1143051_+\|transposase	IS1380-like element ISEc9 family transposase	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0
WP_001233148.1\|1144426_1145026_+	Ail/Lom family protein	H6WZM8	Escherichia_phage	7.7e-107	94.0
WP_000216486.1\|1145177_1148204_+\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0K2FIZ6	Escherichia_phage	1.4e-55	54.6
WP_000885577.1\|1148203_1148788_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	6.6e-103	94.8
WP_000240999.1\|1148842_1149511_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000937481.1\|1149567_1149834_+\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	1.5e-17	81.8
WP_000799406.1\|1150065_1150929_-	spermidine/putrescine ABC transporter permease PotB	Q6GZ02	Mycoplasma_phage	6.7e-11	28.7
WP_172986636.1\|1150912_1152049_-	spermidine/putrescine ABC transporter ATP-binding protein PotA	Q6GZ03	Mycoplasma_phage	5.5e-29	39.8
WP_001522887.1\|1152298_1153525_+	peptidase T	NA	NA	NA	NA
WP_000456506.1\|1153573_1154695_-	[50S ribosomal protein L16]-arginine 3-hydroxylase	NA	NA	NA	NA
WP_000735412.1\|1154770_1156231_-	two-component system sensor histidine kinase PhoQ	NA	NA	NA	NA
WP_001265481.1\|1156230_1156902_-	two-component system response regulator PhoP	NA	NA	NA	NA
WP_000423742.1\|1157071_1158442_-	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	1.2e-107	44.9
WP_001297479.1\|1158445_1159087_-	high frequency lysogenization protein HflD	NA	NA	NA	NA
WP_000004751.1\|1159122_1160229_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA

DBSCAN-SWA_4

1381590 : 1439783

Escherichia_phage(50.0%)

holin,terminase,lysis,tRNA,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020233353.1\|1381590_1382523_-	diguanylate cyclase	A0A127AWB9	Bacillus_phage	2.3e-17	39.5
WP_000387388.1\|1383854_1384838_+	zinc transporter ZntB	NA	NA	NA	NA
WP_000123748.1\|1385315_1386689_+	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	6.6e-53	33.1
WP_001523172.1\|1386817_1387753_-\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	5.9e-146	98.8
WP_000040839.1\|1387804_1389040_-	DUF3596 domain-containing protein	A0A0U2JGI6	Escherichia_phage	3.8e-241	99.5
WP_000079604.1\|1389041_1389257_-	excisionase XisR	A0A0U2RY08	Escherichia_phage	1.8e-37	100.0
WP_001302840.1\|1389356_1389545_-	DUF1187 family protein	A0A0U2QL97	Escherichia_phage	5.5e-27	98.4
WP_001443846.1\|1389582_1389732_-	type I toxin-antitoxin system endodeoxyribonuclease toxin RalR	A0A0U2QQP4	Escherichia_phage	2.5e-22	95.9
WP_000166313.1\|1389787_1390597_-	recombination protein RecT	A0A1P8DTF2	Proteus_phage	4.0e-106	71.5
WP_000105140.1\|1390589_1393190_-	exodeoxyribonuclease VIII	A0A0U2I1R6	Escherichia_phage	6.1e-249	63.5
WP_001344816.1\|1393291_1393567_-	hypothetical protein	A0A0U2QW85	Escherichia_phage	4.0e-42	95.6
WP_001352098.1\|1393641_1393812_-	conserved protein, Rac prophage	A0A0U2SHB5	Escherichia_phage	3.6e-17	71.4
WP_000560223.1\|1393811_1394033_-	killing protein KilR	A0A0U2RTC4	Escherichia_phage	2.0e-36	98.6
WP_001312793.1\|1394474_1394963_+	superinfection exclusion protein B	NA	NA	NA	NA
WP_001169151.1\|1394959_1395115_-	YdaF family protein	M4QQ57	Salicola_phage	6.1e-08	55.3
WP_001326317.1\|1395125_1395305_-	hypothetical protein	NA	NA	NA	NA
WP_000233319.1\|1395547_1395967_-	helix-turn-helix domain-containing protein	A0A2I6PIE7	Escherichia_phage	5.5e-19	46.5
WP_001072342.1\|1396046_1396301_+	hypothetical protein	A0A2I6PIE5	Escherichia_phage	1.3e-18	61.6
WP_000693803.1\|1396297_1396720_+	hypothetical protein	A0A0U2RXZ9	Escherichia_phage	1.3e-68	92.9
WP_001396581.1\|1396797_1397586_+	hypothetical protein	G9L6A8	Escherichia_phage	2.0e-41	64.3
WP_020233967.1\|1397592_1398339_+	ATP-binding protein	V5UQI5	Shigella_phage	1.1e-110	78.5
WP_000450716.1\|1398361_1399123_+	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	3.4e-115	87.4
WP_029702111.1\|1399138_1399561_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	7.4e-64	90.6
WP_000137958.1\|1399722_1400226_+	hypothetical protein	Q9G078	Enterobacteria_phage	4.3e-18	39.7
WP_000200358.1\|1400346_1401120_-	KilA-N domain-containing protein	A0A1L2BWW1	Bacteriophage	9.6e-09	42.6
WP_001445775.1\|1401642_1401768_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	4.0e-10	90.2
WP_001445776.1\|1401850_1402192_-	DUF1971 domain-containing protein	NA	NA	NA	NA
WP_000940344.1\|1403059_1403659_+	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	2.9e-106	92.0
WP_000228032.1\|1403658_1403949_+	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	7.4e-47	88.5
WP_000640106.1\|1403945_1404488_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	5.8e-77	76.3
WP_001208722.1\|1404709_1405279_+	hypothetical protein	NA	NA	NA	NA
WP_001328752.1\|1405247_1405550_-	hypothetical protein	NA	NA	NA	NA
WP_000781775.1\|1405626_1405968_+\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	6.2e-53	90.1
WP_023153991.1\|1405971_1406448_+	glycoside hydrolase family protein	K7PKV2	Enterobacteria_phage	5.0e-85	95.6
WP_001228696.1\|1406664_1406850_+\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	2.8e-15	98.2
WP_001097895.1\|1407046_1408504_+	Trk system potassium uptake protein TrkG	NA	NA	NA	NA
WP_001291105.1\|1408641_1409433_+	ParB N-terminal domain-containing protein	R4TG31	Halovirus	2.8e-48	40.2
WP_020233805.1\|1409425_1410358_+	hypothetical protein	A0A1B1INP7	uncultured_Mediterranean_phage	1.1e-83	54.9
WP_000613571.1\|1410293_1410545_+	hypothetical protein	NA	NA	NA	NA
WP_000089448.1\|1410548_1411643_+\|terminase	terminase small subunit	A0A0U2RXW9	Escherichia_phage	4.5e-113	80.5
WP_000625348.1\|1411623_1412925_+\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	3.6e-149	59.6
WP_000763701.1\|1412927_1414334_+	DUF4055 domain-containing protein	G8C7P4	Escherichia_phage	3.0e-186	69.0
WP_001363932.1\|1414317_1415430_+	hypothetical protein	I6PD76	Cronobacter_phage	7.1e-114	54.5
WP_029702112.1\|1415534_1416299_+	hypothetical protein	G8C7P6	Escherichia_phage	9.0e-84	64.2
WP_020233804.1\|1416397_1417537_+	hypothetical protein	G8C7P7	Escherichia_phage	9.7e-159	75.0
WP_000908084.1\|1417579_1417756_+	hypothetical protein	G8C7P8	Escherichia_phage	4.7e-12	62.3
WP_000634214.1\|1417759_1418155_+	hypothetical protein	NA	NA	NA	NA
WP_000524260.1\|1418154_1418538_+	hypothetical protein	A0A0P0I456	Acinetobacter_phage	2.2e-14	39.4
WP_001029815.1\|1418538_1418919_+	hypothetical protein	A0A059VF88	Pseudomonas_phage	1.1e-18	44.4
WP_000673077.1\|1418915_1419308_+	hypothetical protein	NA	NA	NA	NA
WP_001328756.1\|1419334_1420297_+	hypothetical protein	A0A059VG08	Pseudomonas_phage	8.4e-55	38.6
WP_122452218.1\|1420447_1420807_+	hypothetical protein	NA	NA	NA	NA
WP_032139919.1\|1420914_1421115_+	hypothetical protein	NA	NA	NA	NA
WP_023153989.1\|1421278_1424512_+\|tail	phage tail tape measure protein	A0A2H4J9A1	uncultured_Caudovirales_phage	7.4e-103	33.0
WP_000024051.1\|1424504_1424843_+\|tail	phage tail protein	H6WZM2	Escherichia_phage	4.0e-28	50.0
WP_001152432.1\|1424842_1425541_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	1.1e-125	93.5
WP_032153655.1\|1425546_1426290_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	9.5e-147	96.7
WP_049286672.1\|1426226_1426829_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	8.1e-88	85.6
WP_021523093.1\|1426889_1430369_+	host specificity protein J	A5LH43	Enterobacteria_phage	0.0e+00	89.6
WP_001542091.1\|1430436_1431036_+	Ail/Lom family outer membrane beta-barrel protein	Q9EV15	Enterobacteria_phage	9.8e-102	91.5
WP_032152843.1\|1431100_1433500_+\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0E3M194	Enterobacteria_phage	3.9e-133	55.3
WP_000654154.1\|1433496_1433778_+	hypothetical protein	A0A1X7QHA1	Escherichia_phage	1.2e-17	47.8
WP_000235967.1\|1433787_1434492_+\|tail	tail fiber domain-containing protein	A0A1X7QGH6	Escherichia_phage	1.2e-58	61.7
WP_001405873.1\|1434502_1434796_+	hypothetical protein	NA	NA	NA	NA
WP_000836768.1\|1435931_1436165_-	cold shock protein YdfK	A0A192Y6D5	Salmonella_phage	1.1e-32	88.3
WP_120795384.1\|1436233_1436347_-	Rac prophage; protein YnaM	A0A1C9IHU6	Salmonella_phage	8.4e-07	80.6
WP_029701979.1\|1436950_1438234_+	MHS family MFS transporter	NA	NA	NA	NA
WP_000527786.1\|1438322_1439783_+	mannitol dehydrogenase family protein	G8DCZ3	Micromonas_pusilla_virus	5.1e-43	29.7

DBSCAN-SWA_5

1586850 : 1694117

112

Enterobacteria_phage(40.74%)

terminase,head,capsid,transposase,lysis,tail,portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000526135.1\|1586850_1587309_-\|transposase	IS200/IS605 family transposase	NA	NA	NA	NA
WP_001261003.1\|1587486_1588155_-	DUF3313 domain-containing protein	NA	NA	NA	NA
WP_000586719.1\|1588457_1589051_-	tellurite resistance methyltransferase TehB	NA	NA	NA	NA
WP_001296725.1\|1589047_1590040_-	dicarboxylate transporter/tellurite-resistance protein TehA	NA	NA	NA	NA
WP_001551086.1\|1590163_1591144_+	LbetaH domain-containing protein	NA	NA	NA	NA
WP_001523221.1\|1591135_1591675_-	50S ribosomal protein L7/L12-serine acetyltransferase	NA	NA	NA	NA
WP_001296778.1\|1591737_1591962_-	YdcH family protein	NA	NA	NA	NA
WP_048265110.1\|1592101_1593757_-	glucan biosynthesis protein OpgD	NA	NA	NA	NA
WP_001523218.1\|1593981_1595325_-	VOC family protein	NA	NA	NA	NA
WP_000414564.1\|1595541_1596465_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_001523216.1\|1596502_1598143_-	methyl-accepting chemotaxis protein Trg	NA	NA	NA	NA
WP_029702060.1\|1598541_1598691_+	type I toxin-antitoxin system toxin HokB	NA	NA	NA	NA
WP_000731851.1\|1598762_1598936_-	hypothetical protein	A0A0R6PI25	Moraxella_phage	4.4e-07	59.6
WP_001390056.1\|1599180_1599711_-	cytochrome b561	A0A0U2QLA7	Escherichia_phage	2.0e-18	43.9
WP_000048645.1\|1599899_1600901_+	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA
WP_000115969.1\|1600942_1602382_-	aldehyde dehydrogenase	NA	NA	NA	NA
WP_001027943.1\|1602578_1603379_-	YdcF family protein	NA	NA	NA	NA
WP_000343026.1\|1603494_1603872_-	hypothetical protein	NA	NA	NA	NA
WP_001314706.1\|1603991_1604441_-	hypothetical protein	NA	NA	NA	NA
WP_001523214.1\|1604427_1604766_-	hypothetical protein	NA	NA	NA	NA
WP_021517100.1\|1605050_1608953_-	ATP-dependent RNA helicase HrpA	A0A1V0SIV3	Klosneuvirus	2.2e-53	29.5
WP_000048963.1\|1609153_1609759_+	FMN-dependent NADH-azoreductase	NA	NA	NA	NA
WP_020233384.1\|1609812_1611129_-	phosphatase PAP2/dual specificity phosphatase family protein	NA	NA	NA	NA
WP_021523075.1\|1611118_1612876_-	bifunctional alpha/beta hydrolase/class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000177498.1\|1613787_1614393_-	CDP-alcohol phosphatidyltransferase family protein	NA	NA	NA	NA
WP_001523206.1\|1614563_1616870_-	DUF2773 domain-containing bactofilin	NA	NA	NA	NA
WP_021523074.1\|1616933_1617794_-	pyridoxine 4-dehydrogenase	NA	NA	NA	NA
WP_059321765.1\|1618001_1620410_-	autotransporter domain-containing protein	NA	NA	NA	NA
WP_001523200.1\|1624483_1624807_-	YdbL family protein	NA	NA	NA	NA
WP_172986643.1\|1624814_1625000_-	YnbE family lipoprotein	NA	NA	NA	NA
WP_020233705.1\|1624996_1627636_-	YdbH family protein	NA	NA	NA	NA
WP_000762229.1\|1627843_1628833_+	D-lactate dehydrogenase	M1I4S0	Paramecium_bursaria_Chlorella_virus	2.5e-70	44.0
WP_001523197.1\|1628943_1629366_+	heat shock protein HslJ	NA	NA	NA	NA
WP_001295715.1\|1629362_1629629_-	DUF333 domain-containing protein	NA	NA	NA	NA
WP_021517097.1\|1629902_1633427_+	pyruvate:ferredoxin (flavodoxin) oxidoreductase	NA	NA	NA	NA
WP_000837924.1\|1633793_1634927_+	porin OmpN	Q1MVN1	Enterobacteria_phage	8.3e-118	58.8
WP_001295593.1\|1635067_1635502_+	universal stress protein UspF	A0A1W6JNV4	Morganella_phage	1.4e-28	52.8
WP_000286865.1\|1636086_1637001_+	iron/manganese ABC transporter substrate-binding protein SitA	NA	NA	NA	NA
WP_029702064.1\|1637000_1637828_+	iron/manganese ABC transporter ATP-binding protein SitB	G9BWD6	Planktothrix_phage	3.8e-11	28.5
WP_001101728.1\|1637824_1638682_+	iron/manganese ABC transporter permease subunit SitC	NA	NA	NA	NA
WP_000968125.1\|1638678_1639536_+	iron/manganese ABC transporter permease subunit SitD	NA	NA	NA	NA
WP_000354607.1\|1640008_1640803_+	hypothetical protein	NA	NA	NA	NA
WP_001405873.1\|1641348_1641642_-	hypothetical protein	NA	NA	NA	NA
WP_001314683.1\|1641684_1642725_-\|tail	tail fiber domain-containing protein	A0A0E3M4A9	Enterobacteria_phage	2.9e-125	67.9
WP_000654155.1\|1642734_1643016_-	hypothetical protein	A0A1X7QHA1	Escherichia_phage	1.4e-18	50.0
WP_042099016.1\|1643015_1645391_-\|tail	prophage tail fiber N-terminal domain-containing protein	A0A1X7QGG5	Escherichia_phage	1.8e-167	69.0
WP_001542091.1\|1645455_1646055_-	Ail/Lom family outer membrane beta-barrel protein	Q9EV15	Enterobacteria_phage	9.8e-102	91.5
WP_021523093.1\|1646122_1649602_-	host specificity protein J	A5LH43	Enterobacteria_phage	0.0e+00	89.6
WP_049286672.1\|1649662_1650265_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	8.1e-88	85.6
WP_032153655.1\|1650201_1650945_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	9.5e-147	96.7
WP_029702161.1\|1650950_1651649_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	8.9e-131	97.4
WP_000847345.1\|1651648_1651978_-\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	8.1e-58	98.2
WP_032153656.1\|1651974_1654536_-\|tail	phage tail tape measure protein	A0A0K2FI43	Enterobacteria_phage	0.0e+00	95.9
WP_000459457.1\|1654528_1654963_-\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	6.9e-65	100.0
WP_000479153.1\|1654944_1655367_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	6.7e-73	100.0
WP_001349920.1\|1655382_1656123_-\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	7.8e-133	100.0
WP_000683128.1\|1656130_1656526_-\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	6.5e-70	99.2
WP_000975070.1\|1656522_1657101_-\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	2.7e-80	100.0
WP_000752979.1\|1657112_1657466_-\|head,tail	head-tail joining protein	A0A0K2FJB7	Enterobacteria_phage	2.0e-62	100.0
WP_020233914.1\|1657477_1657876_-	DNA-packaging protein FI	A0A0K2FIR1	Enterobacteria_phage	2.3e-62	98.5
WP_000063277.1\|1657917_1658943_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	2.7e-192	99.7
WP_001708751.1\|1658997_1659330_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	3.8e-55	99.1
WP_020233915.1\|1659339_1660659_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	2.2e-231	97.7
WP_001356819.1\|1660639_1662241_-\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	1.1e-309	99.2
WP_000198149.1\|1662237_1662444_-	gpW family protein	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
WP_001027269.1\|1662440_1664366_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.5
WP_000453587.1\|1664340_1664886_-	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	1.4e-94	98.9
WP_001368374.1\|1665274_1665508_+	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	2.5e-21	84.1
WP_000373090.1\|1665565_1665976_+	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	2.5e-56	79.4
WP_001019606.1\|1666127_1666301_-	addiction module toxin, GnsA/GnsB family	NA	NA	NA	NA
WP_001309517.1\|1666472_1666628_-	hypothetical protein	NA	NA	NA	NA
WP_120795388.1\|1666707_1666773_-	Qin prophage; protein YnfR	NA	NA	NA	NA
WP_071524604.1\|1666775_1666964_-	cold-shock protein	NA	NA	NA	NA
WP_000066495.1\|1666974_1667187_-	cold shock protein CspI	A0A1W6JNX5	Morganella_phage	1.2e-22	74.3
WP_001071769.1\|1667549_1668047_-	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	2.9e-06	29.5
WP_001092971.1\|1668043_1668577_-	lysozyme	K7PLY1	Enterobacteria_phage	6.4e-97	93.2
WP_000189916.1\|1668573_1668885_-	YdfR family protein	K7PGU6	Enterobacteria_phage	2.0e-26	64.6
WP_000839590.1\|1668889_1669105_-\|lysis	phage lysis protein EssD	A5LH82	Enterobacteria_phage	1.1e-31	94.4
WP_000526135.1\|1669661_1670120_-\|transposase	IS200/IS605 family transposase	NA	NA	NA	NA
WP_000066484.1\|1670570_1670786_-	cold shock-like protein CspB	A0A1W6JNX5	Morganella_phage	3.4e-25	76.5
WP_000087756.1\|1671086_1671299_+	cold shock-like protein CspF	NA	NA	NA	NA
WP_120795389.1\|1671353_1671443_+	Qin prophage; protein YnfS	NA	NA	NA	NA
WP_001047135.1\|1671720_1672473_-	antitermination protein	A0A192Y5X6	Salmonella_phage	7.1e-134	92.8
WP_001265199.1\|1672486_1673536_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	2.8e-112	57.0
WP_012304870.1\|1673537_1673816_-	hypothetical protein	NA	NA	NA	NA
WP_000980994.1\|1673882_1674134_-	hypothetical protein	NA	NA	NA	NA
WP_000813254.1\|1674350_1674506_-	type I toxin-antitoxin system toxin HokD	A0A0U2QV81	Escherichia_phage	1.5e-17	96.1
WP_000323025.1\|1674577_1674865_-	type II toxin-antitoxin system mRNA interferase RelE	A0A2H4JBF4	uncultured_Caudovirales_phage	1.4e-29	66.0
WP_000534858.1\|1674864_1675104_-	type II toxin-antitoxin system antitoxin RelB	A0A2H4JBG1	uncultured_Caudovirales_phage	1.6e-18	54.4
WP_001326990.1\|1675128_1675434_+	hypothetical protein	NA	NA	NA	NA
WP_001301033.1\|1675636_1675969_+	protein FlxA	NA	NA	NA	NA
WP_000589005.1\|1676405_1677719_-\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_000915483.1\|1678202_1679225_-	DUF4868 domain-containing protein	NA	NA	NA	NA
WP_001265627.1\|1679227_1679842_-	hypothetical protein	NA	NA	NA	NA
WP_021523102.1\|1680050_1680716_-	epoxyqueuosine reductase QueH	NA	NA	NA	NA
WP_001151242.1\|1680918_1681317_-	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	7.7e-63	93.9
WP_000054487.1\|1681357_1682323_-	hypothetical protein	U5P0A0	Shigella_phage	2.6e-56	60.8
WP_000705355.1\|1682303_1682825_-	hypothetical protein	NA	NA	NA	NA
WP_000921596.1\|1682808_1683036_-	transcriptional regulator	NA	NA	NA	NA
WP_000381212.1\|1683116_1683524_+	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	7.2e-32	51.9
WP_000379575.1\|1683692_1683848_+	DUF1391 family protein	M4QQ57	Salicola_phage	3.0e-07	53.2
WP_000344950.1\|1683849_1684425_+	hypothetical protein	NA	NA	NA	NA
WP_000854559.1\|1684911_1685100_+	cell division inhibition protein DicB	NA	NA	NA	NA
WP_001083276.1\|1685096_1685288_+\|lysis	lysis protein YdfD	NA	NA	NA	NA
WP_000048363.1\|1685381_1687853_+	exonuclease	A0A192Y6E0	Salmonella_phage	1.2e-57	56.1
WP_000005552.1\|1687925_1688177_+	excisionase family protein	S4TND0	Salmonella_phage	2.2e-15	50.0
WP_001339397.1\|1688247_1688925_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	3.3e-21	46.0
WP_000624622.1\|1688924_1689272_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-46	76.6
WP_029392005.1\|1689291_1690863_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.9e-169	58.5
WP_000526135.1\|1691132_1691591_-\|transposase	IS200/IS605 family transposase	NA	NA	NA	NA
WP_001389342.1\|1692911_1693040_-	hypothetical protein	NA	NA	NA	NA
WP_000836037.1\|1693097_1694117_-	Zn-dependent oxidoreductase	E3SJ82	Synechococcus_phage	4.3e-17	26.2

DBSCAN-SWA_6

2185448 : 2192966

Escherichia_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_021523155.1\|2185448_2185997_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	4.4e-48	54.4
WP_021523156.1\|2186001_2186880_-	glucose-1-phosphate thymidylyltransferase RfbA	A0A291LA53	Escherichia_phage	1.9e-106	64.5
WP_021523157.1\|2186937_2187837_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.7e-28	35.1
WP_001515524.1\|2187836_2188922_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.3e-101	54.2
WP_021523158.1\|2189293_2190187_-	UTP--glucose-1-phosphate uridylyltransferase GalF	A0A127AW70	Bacillus_phage	1.0e-46	42.0
WP_021523159.1\|2190418_2191414_-	SDR family oxidoreductase	A0A1V0QG29	Shearwaterpox_virus	2.5e-09	26.0
WP_021523160.1\|2191571_2192966_-	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	9.8e-20	31.9

DBSCAN-SWA_7

2236931 : 2326779

Escherichia_phage(30.0%)

holin,terminase,integrase,head,capsid,transposase,lysis,tRNA,tail,portal,protease,plate

attL 2270280:2270295|attR 2315764:2315779

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_157919894.1\|2236931_2238788_-\|tail	tail fiber domain-containing protein	A0A0D4D9I5	Escherichia_phage	7.2e-103	36.0
WP_140436207.1\|2238813_2239179_-	hypothetical protein	A0A291LGD5	Salmonella_phage	1.0e-16	46.5
WP_172986647.1\|2239156_2240404_-	hypothetical protein	NA	NA	NA	NA
WP_172986648.1\|2240419_2240809_-	hypothetical protein	NA	NA	NA	NA
WP_157919893.1\|2241540_2241702_-	hypothetical protein	NA	NA	NA	NA
WP_172986649.1\|2242031_2243357_-\|head,protease	HK97 family phage prohead protease	R9TPU0	Vibrio_phage	9.6e-17	25.7
WP_137504030.1\|2244844_2245390_-	hypothetical protein	NA	NA	NA	NA
WP_135566170.1\|2245399_2245609_-	hypothetical protein	NA	NA	NA	NA
WP_172986678.1\|2245580_2246141_-\|terminase	phage terminase large subunit family protein	NA	NA	NA	NA
WP_077898445.1\|2246285_2246750_-\|terminase	phage terminase large subunit family protein	G8EXZ6	Synechococcus_phage	3.2e-07	32.4
WP_123055505.1\|2246721_2247204_-\|terminase	phage terminase large subunit family protein	NA	NA	NA	NA
WP_052077011.1\|2247246_2247660_-	hypothetical protein	NA	NA	NA	NA
WP_077940995.1\|2248135_2248699_+	hypothetical protein	NA	NA	NA	NA
WP_172986650.1\|2248851_2249523_+	hypothetical protein	NA	NA	NA	NA
WP_033802730.1\|2249571_2249889_-	hypothetical protein	NA	NA	NA	NA
WP_172986651.1\|2252214_2252766_-	hypothetical protein	NA	NA	NA	NA
WP_087503933.1\|2252777_2253251_-	hypothetical protein	A0A2H4PHE8	Dickeya_phage	8.4e-16	34.3
WP_172986652.1\|2253335_2253476_-	hypothetical protein	NA	NA	NA	NA
WP_087503934.1\|2253640_2253832_-	hypothetical protein	NA	NA	NA	NA
WP_172986653.1\|2253912_2255478_-	recombinase zinc beta ribbon domain-containing protein	NA	NA	NA	NA
WP_020233021.1\|2256218_2258159_-	protein kinase YegI	NA	NA	NA	NA
WP_000722355.1\|2258356_2258818_+	YegJ family protein	NA	NA	NA	NA
WP_020233022.1\|2258882_2259644_-	protein-serine/threonine phosphatase PphC	NA	NA	NA	NA
WP_001520817.1\|2259640_2260300_-	VWA domain-containing protein	NA	NA	NA	NA
WP_010723109.1\|2260520_2260580_-	type I toxin-antitoxin system toxin IbsA	NA	NA	NA	NA
WP_001386899.1\|2260852_2260909_-	type I toxin-antitoxin system Ibs family toxin	NA	NA	NA	NA
WP_100249716.1\|2261180_2261237_-	type I toxin-antitoxin system Ibs family toxin	NA	NA	NA	NA
WP_001520819.1\|2261515_2262763_+	multidrug efflux RND transporter subunit MdtA	NA	NA	NA	NA
WP_001197884.1\|2262762_2265885_+	multidrug efflux RND transporter permease subunit MdtB	NA	NA	NA	NA
WP_001520820.1\|2265885_2268963_+	multidrug efflux RND transporter permease subunit MdtC	NA	NA	NA	NA
WP_001520822.1\|2268963_2270379_+	MFS transporter	NA	NA	NA	NA
2270280:2270295	attL	NA	NA	NA	NA
WP_020233091.1\|2271534_2272350_-	hypothetical protein	NA	NA	NA	NA
WP_021523176.1\|2273040_2273586_-	hypothetical protein	Q858S7	Enterobacteria_phage	1.1e-96	98.9
WP_021523177.1\|2273855_2274383_-\|tail	tail fiber assembly protein	A0A0C4UR05	Shigella_phage	4.9e-89	92.6
WP_021523178.1\|2274384_2276406_-\|tail	phage tail protein	A0A0A7NV63	Enterobacteria_phage	2.7e-260	64.5
WP_001285325.1\|2276416_2276947_-\|tail	phage tail protein I	U5N0U8	Enterobacteria_phage	2.3e-102	100.0
WP_001121453.1\|2276939_2277848_-\|plate	baseplate assembly protein	U5N3T9	Enterobacteria_phage	4.4e-162	99.7
WP_000127164.1\|2277852_2278200_-	GPW/gp25 family protein	A0A0F7LDQ1	Escherichia_phage	1.3e-58	100.0
WP_020233499.1\|2278196_2278832_-\|plate	phage baseplate assembly protein V	U5N3F0	Enterobacteria_phage	1.2e-113	99.5
WP_021523179.1\|2278915_2279701_+	hypothetical protein	NA	NA	NA	NA
WP_001001802.1\|2279772_2280225_-	phage virion morphogenesis protein	A0A0F7LDR6	Escherichia_phage	1.5e-75	98.0
WP_000917186.1\|2280217_2280685_-\|tail	phage tail protein	Q7Y4E0	Escherichia_virus	2.5e-81	98.7
WP_072174950.1\|2280647_2280821_-\|lysis	phage lysis protein	Q7Y4E1	Escherichia_virus	9.8e-23	91.2
WP_001512906.1\|2280792_2281218_-\|lysis	LysB family phage lysis regulatory protein	Q858W0	Yersinia_virus	1.9e-67	98.6
WP_000736608.1\|2281205_2281631_-	hypothetical protein	U5N096	Enterobacteria_phage	2.3e-57	95.7
WP_001144101.1\|2281645_2282143_-	glycoside hydrolase family 104 protein	A0A0F7LBS0	Escherichia_phage	3.1e-93	100.0
WP_000123123.1\|2282142_2282424_-\|holin	phage holin family protein	A0A0F7LA12	Escherichia_phage	1.3e-43	100.0
WP_000846399.1\|2282427_2282631_-\|tail	tail protein X	U5N3E7	Enterobacteria_phage	4.0e-31	100.0
WP_000988636.1\|2282630_2283140_-\|head	head completion/stabilization protein	A0A0F7LDJ1	Escherichia_phage	8.6e-91	100.0
WP_000203455.1\|2283239_2283983_-\|terminase	terminase endonuclease subunit	A0A0F7LDU4	Escherichia_phage	3.0e-124	99.2
WP_020233501.1\|2283986_2285060_-\|capsid	phage major capsid protein, P2 family	Q778Y7	Enterobacteria_phage	2.5e-201	99.2
WP_020233502.1\|2285118_2285973_-\|capsid	GPO family capsid scaffolding protein	Q778Z1	Enterobacteria_phage	8.1e-134	98.2
WP_000156847.1\|2286146_2287919_+\|terminase	terminase ATPase subunit family protein	A0A0F7LCM8	Escherichia_phage	0.0e+00	100.0
WP_001533791.1\|2287918_2288953_+\|portal	phage portal protein	A0A0F7LDI7	Escherichia_phage	2.7e-200	99.7
WP_029401227.1\|2289339_2290764_+	ATP-binding protein	NA	NA	NA	NA
WP_029401228.1\|2290760_2291753_+	hypothetical protein	NA	NA	NA	NA
WP_029401229.1\|2291703_2292855_-	DNA cytosine methyltransferase	M1PSQ0	Streptococcus_phage	1.4e-32	31.2
WP_029701698.1\|2295190_2295466_-	DUF5405 family protein	U5N3W1	Enterobacteria_phage	1.5e-44	100.0
WP_029701699.1\|2295462_2295687_-	TraR/DksA family transcriptional regulator	A0A0F7LDG9	Escherichia_phage	3.8e-35	98.6
WP_001754915.1\|2295686_2295989_-	DUF5405 family protein	A0A0F7LCL4	Escherichia_phage	3.5e-47	100.0
WP_000557703.1\|2295988_2296213_-	DUF2732 family protein	S4TP68	Salmonella_phage	4.7e-33	100.0
WP_029701701.1\|2296276_2296777_-	hypothetical protein	S4TTB7	Salmonella_phage	1.9e-90	98.8
WP_162852172.1\|2296773_2296944_-	hypothetical protein	S4TNZ7	Salmonella_phage	3.9e-24	98.2
WP_029701703.1\|2296954_2297230_-	hypothetical protein	Q1JS60	Enterobacteria_phage	2.2e-48	98.9
WP_000020919.1\|2297351_2297651_+	helix-turn-helix domain-containing protein	Q1JS61	Enterobacteria_phage	2.4e-48	100.0
WP_000985261.1\|2297766_2298780_+\|integrase	site-specific integrase	Q83VS6	Escherichia_phage	4.1e-193	99.1
WP_001303579.1\|2299056_2299374_-	hypothetical protein	NA	NA	NA	NA
WP_000807371.1\|2299788_2300688_+	lipid kinase YegS	A0A1V0SBJ0	Catovirus	4.8e-12	29.0
WP_000178552.1\|2300769_2301549_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_001520826.1\|2301648_2302689_-	galactitol-1-phosphate 5-dehydrogenase	NA	NA	NA	NA
WP_000490663.1\|2302736_2304092_-	PTS galactitol transporter subunit IIC	NA	NA	NA	NA
WP_000823282.1\|2304095_2304380_-	PTS galactitol transporter subunit IIB	NA	NA	NA	NA
WP_000182900.1\|2304410_2304863_-	PTS galactitol transporter subunit IIA	NA	NA	NA	NA
WP_001308759.1\|2306158_2307013_-	tagatose-bisphosphate aldolase subunit GatY	NA	NA	NA	NA
WP_000129551.1\|2307242_2308295_-	class I fructose-bisphosphate aldolase	NA	NA	NA	NA
WP_000858471.1\|2308551_2309829_+	MFS transporter	NA	NA	NA	NA
WP_001520828.1\|2309825_2310830_+	ADP-ribosylglycohydrolase family protein	A0A1S6UB21	Serratia_phage	4.4e-14	29.7
WP_001520829.1\|2310826_2311792_+	kinase	NA	NA	NA	NA
WP_000434044.1\|2311765_2312512_-	GntR family transcriptional regulator	NA	NA	NA	NA
WP_020233504.1\|2312563_2313382_-	glycoside hydrolase family 25 protein	D0R7H8	Paenibacillus_phage	1.1e-23	38.0
WP_000822277.1\|2313446_2314247_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_001195594.1\|2314243_2315032_-	hydroxyethylthiazole kinase	NA	NA	NA	NA
WP_000019944.1\|2315254_2315527_-	Ni(II)/Co(II)-binding transcriptional repressor RcnR	NA	NA	NA	NA
WP_000134572.1\|2315647_2316472_+	nickel/cobalt efflux protein RcnA	NA	NA	NA	NA
2315764:2315779	attR	NA	NA	NA	NA
WP_000153067.1\|2316690_2317029_+	Ni(II)/Co(II) efflux transporter accessory subunit RcnB	NA	NA	NA	NA
WP_000702203.1\|2317110_2318145_-	putative fimbrial-like adhesin protein	NA	NA	NA	NA
WP_001520833.1\|2318160_2320641_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_000677340.1\|2320656_2321331_-	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_000830468.1\|2321411_2321954_-	fimbrial protein	NA	NA	NA	NA
WP_000526135.1\|2322288_2322747_-\|transposase	IS200/IS605 family transposase	NA	NA	NA	NA
WP_001328276.1\|2322960_2323242_-	YehE family protein	NA	NA	NA	NA
WP_001005448.1\|2323504_2324614_-	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_001520834.1\|2324745_2326779_+\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	2.3e-54	27.3

DBSCAN-SWA_8

2338218 : 2347661

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001520842.1\|2338218_2339355_+	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	2.5e-162	97.4
WP_021523183.1\|2339351_2341352_+	SWIM zinc finger family protein	Q9EYF6	Enterobacteria_phage	0.0e+00	95.7
WP_001295429.1\|2341476_2341938_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	1.9e-76	100.0
WP_001295430.1\|2341979_2342450_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
WP_000598641.1\|2342496_2343216_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001309587.1\|2343212_2344898_-	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	7.3e-304	99.5
WP_001240398.1\|2345119_2345851_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	2.8e-111	99.0
WP_001216963.1\|2345910_2346018_+	protein YohO	NA	NA	NA	NA
WP_000783145.1\|2345998_2346730_-	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_000569374.1\|2346734_2347661_-	glycine betaine ABC transporter ATP binding protein YehX	G3M9Y6	Bacillus_virus	4.8e-23	30.8

DBSCAN-SWA_9

2410875 : 2420316

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000040703.1\|2410875_2412012_+	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	3.6e-161	97.1
WP_033817093.1\|2412008_2414009_+	SWIM zinc finger family protein	Q9EYF6	Enterobacteria_phage	0.0e+00	96.3
WP_001295429.1\|2414133_2414595_+	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	1.9e-76	100.0
WP_000950404.1\|2414634_2415105_-	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	2.0e-81	99.4
WP_000598641.1\|2415151_2415871_-	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001309587.1\|2415867_2417553_-	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	7.3e-304	99.5
WP_001240398.1\|2417774_2418506_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	2.8e-111	99.0
WP_001216963.1\|2418565_2418673_+	protein YohO	NA	NA	NA	NA
WP_000783145.1\|2418653_2419385_-	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_000569374.1\|2419389_2420316_-	glycine betaine ABC transporter ATP binding protein YehX	G3M9Y6	Bacillus_virus	4.8e-23	30.8

DBSCAN-SWA_10

2890448 : 2959746

Enterobacteria_phage(59.38%)

holin,terminase,integrase,head,coat,lysis,tRNA,portal

attL 2919362:2919384|attR 2967485:2967507

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_020233264.1\|2890448_2890985_-\|tRNA	tRNA adenosine(34) deaminase TadA	NA	NA	NA	NA
WP_000190642.1\|2891009_2891645_-	phosphatidylglycerophosphatase C	NA	NA	NA	NA
WP_001013779.1\|2891853_2892702_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
WP_001196285.1\|2892757_2893018_+	4Fe-4S dicluster ferredoxin YfhL	A0A1B1IWY9	uncultured_Mediterranean_phage	8.4e-18	52.3
WP_000128776.1\|2893212_2893293_-	type I toxin-antitoxin system toxin ShoB	NA	NA	NA	NA
WP_001521083.1\|2893712_2894093_-	holo-ACP synthase	NA	NA	NA	NA
WP_001314938.1\|2894092_2894824_-	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
WP_000399404.1\|2894835_2895564_-	DNA repair protein RecO	NA	NA	NA	NA
WP_000020737.1\|2895575_2896481_-	GTPase Era	NA	NA	NA	NA
WP_001068343.1\|2896477_2897158_-	ribonuclease III	A0A2P0VNZ5	Tetraselmis_virus	5.6e-21	39.6
WP_000002542.1\|2897430_2898405_-	signal peptidase I	NA	NA	NA	NA
WP_001521085.1\|2898420_2900220_-	elongation factor 4	A0A2K9L6L3	Tupanvirus	4.2e-23	41.9
WP_000589053.1\|2900417_2900897_-	SoxR-reducing system protein RseC	NA	NA	NA	NA
WP_000812053.1\|2900893_2901850_-	sigma-E factor regulatory protein RseB	NA	NA	NA	NA
WP_001168459.1\|2901849_2902500_-	anti-sigma-E factor RseA	NA	NA	NA	NA
WP_001295364.1\|2902532_2903108_-	RNA polymerase sigma factor RpoE	NA	NA	NA	NA
WP_001303621.1\|2903104_2903260_-	rpoE leader peptide RseD	NA	NA	NA	NA
WP_001094401.1\|2903515_2905138_+	L-aspartate oxidase	NA	NA	NA	NA
WP_001295363.1\|2905122_2905860_-\|tRNA	tRNA (adenosine(37)-N6)-methyltransferase TrmM	NA	NA	NA	NA
WP_000219193.1\|2905991_2907326_+	ATP-dependent RNA helicase SrmB	E3T5E1	Cafeteria_roenbergensis_virus	2.9e-45	30.8
WP_001521087.1\|2907358_2908240_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_001521088.1\|2908342_2908930_+	cysteine/O-acetylserine transporter	NA	NA	NA	NA
WP_000627804.1\|2908991_2909375_-	autonomous glycyl radical cofactor GrcA	A0A088FS37	Shigella_phage	4.7e-33	70.9
WP_001262721.1\|2909679_2910369_+	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	9.3e-56	48.8
WP_001521090.1\|2910416_2911454_-\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
WP_001098726.1\|2911660_2912080_+	thioredoxin TrxC	A0A0K2FIM3	Achromobacter_phage	2.8e-15	38.5
WP_001308860.1\|2912148_2912847_+	DTW domain-containing protein	NA	NA	NA	NA
WP_001520954.1\|2915826_2917074_+	hypothetical protein	NA	NA	NA	NA
WP_000776768.1\|2917252_2918008_-	phospholipid-binding lipoprotein MlaA	NA	NA	NA	NA
WP_000368131.1\|2918301_2919234_+	formate/nitrite transporter family protein	E7DYY8	Enterobacteria_phage	1.2e-167	100.0
2919362:2919384	attL	NA	NA	NA	NA
WP_087503470.1\|2919545_2920703_+\|integrase	prophage integrase IntS	A5VW56	Enterobacteria_phage	3.7e-222	99.2
WP_016242483.1\|2920819_2921476_-	hypothetical protein	NA	NA	NA	NA
WP_050596990.1\|2921476_2922208_+	hypothetical protein	NA	NA	NA	NA
WP_087503469.1\|2922327_2924727_-\|head	phage head-binding domain-containing protein	A5VW57	Enterobacteria_phage	8.0e-78	90.6
WP_087503468.1\|2924891_2927285_-	lytic transglycosylase domain-containing protein	Q716G2	Shigella_phage	0.0e+00	96.8
WP_087503467.1\|2927285_2928617_-	phage DNA ejection protein	A0A2D1GLX5	Escherichia_phage	5.5e-214	98.2
WP_087503466.1\|2928626_2929319_-	DNA transfer protein	G5DA80	Enterobacteria_phage	2.7e-111	99.6
WP_087503465.1\|2929321_2929777_-	DUF2824 family protein	A5VW67	Enterobacteria_phage	2.8e-85	97.4
WP_087503464.1\|2929776_2930730_-	hypothetical protein	Q716G6	Shigella_phage	5.4e-94	84.9
WP_085701391.1\|2930729_2932148_-	packaged DNA stabilization protein gp10	Q9AYZ4	Salmonella_phage	2.3e-274	98.7
WP_117041780.1\|2932157_2932619_-\|head	head DNA stabilization protein	A5VW70	Enterobacteria_phage	1.7e-82	98.7
WP_001389518.1\|2932599_2932788_-	hypothetical protein	A0A088CPR7	Enterobacteria_phage	2.9e-28	100.0
WP_005759997.1\|2932829_2934089_-\|coat	coat protein	A5VW72	Enterobacteria_phage	2.3e-222	94.3
WP_117041781.1\|2934107_2935001_-	scaffolding protein	A0A088CPT0	Enterobacteria_phage	1.4e-128	98.3
WP_117041782.1\|2935091_2937290_-\|portal	portal protein	A0A088CQ69	Enterobacteria_phage	0.0e+00	99.3
WP_000200766.1\|2937291_2938707_-\|terminase	PBSX family phage terminase large subunit	A5VW75	Enterobacteria_phage	1.2e-278	99.8
WP_000113732.1\|2938703_2939144_-	hypothetical protein	C7U0V7	Enterobacteria_phage	1.7e-79	99.3
WP_000807788.1\|2939146_2939389_-	DUF2560 family protein	A5VW77	Enterobacteria_phage	1.3e-36	100.0
WP_001028465.1\|2939551_2940073_-	KilA-N domain-containing protein	K7P7K9	Enterobacteria_phage	1.5e-93	100.0
WP_021554252.1\|2940276_2940714_-\|lysis	lysis protein	K7P710	Enterobacteria_phage	6.1e-69	95.2
WP_000229389.1\|2940710_2941187_-	glycoside hydrolase family protein	A5VW81	Enterobacteria_phage	7.5e-89	100.0
WP_000783734.1\|2941170_2941494_-\|holin	phage holin, lambda family	G5DA93	Enterobacteria_phage	1.3e-52	100.0
WP_000027554.1\|2942089_2942608_-	DUF1133 family protein	Q716B8	Shigella_phage	5.9e-95	99.4
WP_000994516.1\|2942604_2942793_-	protein ninH	A5VW84	Enterobacteria_phage	5.5e-27	100.0
WP_001549462.1\|2942789_2943152_-	RusA family crossover junction endodeoxyribonuclease	K7PJW5	Enterobacteria_phage	6.6e-61	97.5
WP_023146907.1\|2943152_2943677_-	HNH endonuclease	K4F9R1	Cronobacter_phage	7.1e-32	42.9
WP_000002250.1\|2943673_2943964_-	DUF1364 domain-containing protein	Q9MCN9	Enterobacteria_phage	3.4e-52	100.0
WP_023146906.1\|2943963_2944686_-	phage antirepressor KilAC domain-containing protein	K7P7L0	Enterobacteria_phage	1.1e-128	97.5
WP_000566866.1\|2944678_2944849_-	protein ninF	K7PLU6	Enterobacteria_phage	2.5e-26	100.0
WP_024176095.1\|2944845_2945028_-	NinE family protein	Q8H9Z6	Enterobacteria_phage	1.3e-28	98.3
WP_023146905.1\|2945024_2945552_-	phage N-6-adenine-methyltransferase	A0A1I9LJP9	Stx_converting_phage	1.2e-100	99.4
WP_000736913.1\|2945548_2945989_-	recombination protein NinB	M1FPM8	Enterobacteria_phage	1.2e-80	100.0
WP_001749476.1\|2946062_2947439_-	AAA family ATPase	A0A0P0ZC27	Stx2-converting_phage	1.6e-253	99.8
WP_172986679.1\|2947435_2948323_-	replication protein	A5VW95	Enterobacteria_phage	1.1e-141	98.3
WP_001244621.1\|2948385_2948658_-	hypothetical protein	G9L679	Escherichia_phage	2.7e-43	100.0
WP_000251072.1\|2948680_2948974_-	hypothetical protein	A5VW96	Enterobacteria_phage	1.7e-46	100.0
WP_001194218.1\|2949093_2949309_-	helix-turn-helix transcriptional regulator	Q716D6	Shigella_phage	1.4e-31	100.0
WP_000028392.1\|2949412_2950045_+	LexA family transcriptional regulator	K7P850	Enterobacteria_phage	1.6e-118	99.5
WP_000618034.1\|2950041_2950446_+	hypothetical protein	Q716D7	Shigella_phage	2.1e-68	96.2
WP_077694523.1\|2950695_2951076_+	antitermination protein	A4KWR0	Enterobacteria_phage	5.3e-53	99.1
WP_000213975.1\|2951154_2951355_+	Restriction inhibitor protein ral	A0A0K2FJE6	Enterobacteria_phage	1.4e-33	100.0
WP_000972063.1\|2951581_2951716_+	hypothetical protein	K7PHK2	Enterobacteria_phage	3.1e-16	100.0
WP_001243355.1\|2951700_2951853_+	host cell division inhibitory peptide Kil	A5VWA5	Enterobacteria_phage	4.7e-21	100.0
WP_000604111.1\|2951937_2952246_+	hypothetical protein	K7PJM4	Enterobacteria_phage	1.1e-53	100.0
WP_032153682.1\|2952242_2953154_+	recombinase RecT	K7PKG9	Enterobacteria_phage	2.4e-168	98.7
WP_032153683.1\|2953137_2953620_+	siphovirus Gp157 family protein	K7P6T5	Enterobacteria_phage	6.1e-78	97.5
WP_000753555.1\|2953631_2953946_+	hypothetical protein	K7PLT4	Enterobacteria_phage	1.2e-50	100.0
WP_029701300.1\|2953962_2954244_+	hypothetical protein	K7P7M4	Enterobacteria_phage	2.8e-43	96.8
WP_032153684.1\|2954240_2954408_+	DUF2737 family protein	Q716F2	Shigella_phage	5.0e-24	98.2
WP_029701301.1\|2954404_2954659_+	hypothetical protein	A0A1V0E5L1	Salmonella_phage	3.2e-38	95.2
WP_029701302.1\|2954645_2955338_+	ead/Ea22-like family protein	A0A088CC42	Shigella_phage	1.2e-82	55.4
WP_000951706.1\|2955339_2955549_+	hypothetical protein	A0A077SL56	Escherichia_phage	4.2e-36	100.0
WP_029701304.1\|2955545_2956337_+	DUF551 domain-containing protein	A0A0H4IU61	Shigella_phage	1.0e-58	51.8
WP_029701309.1\|2956329_2956614_+	RNA-binding protein	A0A2D1GLL3	Escherichia_phage	9.4e-47	94.7
WP_000545716.1\|2956685_2956853_+	hypothetical protein	K7P728	Enterobacteria_phage	9.2e-26	92.7
WP_001163428.1\|2956910_2957111_+	response regulator inhibitor TorI	K7P7V0	Enterobacteria_phage	2.4e-33	100.0
WP_001535474.1\|2957363_2958650_+\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	1.1e-65	37.3
WP_001535476.1\|2958642_2959398_+	hypothetical protein	NA	NA	NA	NA
WP_000749077.1\|2959554_2959746_+	AlpA family transcriptional regulator	E5E3Y1	Burkholderia_phage	4.2e-06	49.0
2967485:2967507	attR	NA	NA	NA	NA

DBSCAN-SWA_11

3129456 : 3138225

Escherichia_phage(71.43%)

integrase

attL 3122818:3122829|attR 3131042:3131053

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3122818:3122829	attL	NA	NA	NA	NA
WP_029701594.1\|3129456_3130920_-\|integrase	tyrosine-type recombinase/integrase	A0A0R6PHE0	Moraxella_phage	8.4e-22	27.8
WP_108433725.1\|3131079_3133647_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	7.1e-32	20.8
3131042:3131053	attR	NA	NA	NA	NA
WP_001141345.1\|3133752_3134409_+	protein-serine/threonine phosphatase	A0A077SLQ6	Escherichia_phage	5.0e-51	47.0
WP_001295181.1\|3134459_3135227_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	2.5e-70	56.7
WP_000847993.1\|3135422_3136331_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	1.1e-117	76.5
WP_001521147.1\|3136327_3137590_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	1.3e-135	61.4
WP_001278994.1\|3137586_3138225_+	aldolase	A0A077SK32	Escherichia_phage	1.4e-82	75.0

DBSCAN-SWA_12

4898721 : 4967141

uncultured_Caudovirales_phage(17.65%)

protease,transposase,holin,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001162173.1\|4898721_4900074_+\|protease	metalloprotease PmbA	NA	NA	NA	NA
WP_001232246.1\|4900257_4900644_+	cytochrome b562	NA	NA	NA	NA
WP_000212715.1\|4900835_4901078_+	type II toxin-antitoxin system RelB/DinJ family antitoxin	A0A2H4JBG1	uncultured_Caudovirales_phage	1.4e-14	50.0
WP_001105433.1\|4901067_4901358_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A2H4JBF4	uncultured_Caudovirales_phage	3.8e-27	63.8
WP_001009182.1\|4901358_4901823_-	anaerobic ribonucleoside-triphosphate reductase-activating protein	K4F9T1	Cronobacter_phage	8.5e-53	57.1
WP_000187798.1\|4902007_4904146_-	anaerobic ribonucleoside-triphosphate reductase	A0A2I7QNQ7	Vibrio_phage	1.5e-266	64.5
WP_021523332.1\|4904539_4906195_-	alpha,alpha-phosphotrehalase	NA	NA	NA	NA
WP_021523333.1\|4906244_4907666_-	PTS trehalose transporter subunit IIBC	NA	NA	NA	NA
WP_001181324.1\|4907784_4908732_-	HTH-type transcriptional regulator TreR	C6ZCU4	Enterobacteria_phage	7.9e-13	21.8
WP_001387276.1\|4908916_4908970_+	mgtA regulatory leader peptide MgtL	NA	NA	NA	NA
WP_000471850.1\|4909110_4911807_+	magnesium-translocating P-type ATPase	M1HLC0	Paramecium_bursaria_Chlorella_virus	3.4e-45	27.3
WP_000047539.1\|4912012_4912399_-	2-iminobutanoate/2-iminopropanoate deaminase	NA	NA	NA	NA
WP_000148581.1\|4912471_4912933_-	aspartate carbamoyltransferase regulatory subunit	NA	NA	NA	NA
WP_000013046.1\|4912945_4913881_-	aspartate carbamoyltransferase	M1HWF9	Paramecium_bursaria_Chlorella_virus	2.9e-52	40.2
WP_001296693.1\|4913884_4914019_-	pyr operon leader peptide	NA	NA	NA	NA
WP_000230281.1\|4914299_4914695_-	RidA family protein	NA	NA	NA	NA
WP_000500687.1\|4914825_4915539_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_000256681.1\|4915609_4916203_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_001326836.1\|4916347_4916800_+	toxin-antitoxin biofilm protein TabA	NA	NA	NA	NA
WP_000036448.1\|4916922_4918518_+	hypothetical protein	NA	NA	NA	NA
WP_000012907.1\|4918573_4919578_-	ornithine carbamoyltransferase	NA	NA	NA	NA
WP_000002953.1\|4919739_4920156_+	ribonuclease E inhibitor RraB	NA	NA	NA	NA
WP_001059412.1\|4920201_4920705_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_016245205.1\|4920897_4922094_+	DUF898 domain-containing protein	NA	NA	NA	NA
WP_000416387.1\|4922149_4925005_-\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	1.3e-140	36.7
WP_000786399.1\|4925004_4925448_-	DNA polymerase III subunit chi	NA	NA	NA	NA
WP_029701911.1\|4925801_4927313_-	leucyl aminopeptidase	Q6GYZ8	Mycoplasma_phage	3.0e-46	38.0
WP_000584114.1\|4927579_4928680_+	LPS export ABC transporter permease LptF	NA	NA	NA	NA
WP_001295681.1\|4928679_4929762_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA
WP_021523335.1\|4929922_4931425_-	DUF853 domain-containing protein	A0A248XCZ8	Klebsiella_phage	1.4e-83	43.9
WP_001309159.1\|4931502_4932501_-	DNA-binding transcriptional regulator IdnR	NA	NA	NA	NA
WP_001128347.1\|4932567_4933887_-	gnt-II system L-idonate transporter	NA	NA	NA	NA
WP_000998695.1\|4933949_4934714_-	gluconate 5-dehydrogenase	NA	NA	NA	NA
WP_001197411.1\|4934737_4935769_-	L-idonate 5-dehydrogenase	NA	NA	NA	NA
WP_000896738.1\|4935985_4936549_+	gluconokinase	NA	NA	NA	NA
WP_001318460.1\|4936552_4937572_-	NADPH-dependent aldehyde reductase Ahr	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	1.4e-44	30.7
WP_024166525.1\|4942129_4943476_-\|transposase	IS4-like element IS4 family transposase	NA	NA	NA	NA
WP_000611568.1\|4945312_4946431_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_000594405.1\|4946473_4946599_+	hypothetical protein	NA	NA	NA	NA
WP_000254999.1\|4946651_4946909_-	hypothetical protein	NA	NA	NA	NA
WP_085948656.1\|4947222_4948389_+\|transposase	IS3-like element IS911 family transposase	Q716C2	Shigella_phage	1.8e-184	99.3
WP_000625671.1\|4948324_4948738_-	DUF2254 domain-containing protein	NA	NA	NA	NA
WP_001293436.1\|4948800_4950798_-\|holin	choline BCCT transporter BetT	A0A2I7QNT1	Vibrio_phage	7.4e-21	25.9
WP_085947616.1\|4950951_4952108_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	3.6e-68	45.1
WP_000177057.1\|4953041_4953299_+	hypothetical protein	NA	NA	NA	NA
WP_000175457.1\|4953855_4954623_-	Fe(3+) dicitrate ABC transporter ATP-binding protein FecE	G3M9Y6	Bacillus_virus	6.4e-13	24.8
WP_000684855.1\|4954623_4955580_-	Fe(3+) dicitrate ABC transporter permease subunit FecD	A0A2H4IY97	uncultured_Caudovirales_phage	2.4e-17	26.1
WP_000125187.1\|4955576_4956575_-	iron-dicitrate ABC transporter permease FecC	NA	NA	NA	NA
WP_000879164.1\|4956571_4957474_-	Fe(3+) dicitrate ABC transporter substrate-binding protein FecB	NA	NA	NA	NA
WP_000188262.1\|4957518_4959843_-	Fe(3+) dicitrate transport protein FecA	NA	NA	NA	NA
WP_001068913.1\|4959929_4960883_-	fec operon regulator FecR	NA	NA	NA	NA
WP_001283626.1\|4960879_4961401_-	RNA polymerase sigma factor FecI	NA	NA	NA	NA
WP_000555341.1\|4963150_4963408_+	hypothetical protein	NA	NA	NA	NA
WP_000823243.1\|4964158_4965517_+	esterase-like activity of phytase family protein	NA	NA	NA	NA
WP_000998019.1\|4965755_4967141_-\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	3.4e-259	89.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP047609

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection