CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP054255	Klebsiella variicola strain FH-1 plasmid unnamed, complete sequence	0 crisprs	csa3	0	0	0	0
NZ_CP054254	Klebsiella variicola strain FH-1 chromosome, complete genome	2 crisprs	csa3,cas3,DEDDh,DinG,cas3HD,WYL	0	0	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP054254_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP054254_1

4016471-4016577

Orphan

Consensus_repeat	Method
CCCTCTCCCATAGGGAGAGGGAGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP054254_1

>merge|NZ_CP054254|1|4016471-4016577|CRISPRCasFinder
CCCTCTCCCATAGGGAGAGGGAGCACACCCTAAAAAAGGCCATTGTCATTGCCTTTTTGCGTTTACCTTGCCCTCACCCCAACCCTCTCCCACAGGGAGAGGGAGCA

>NZ_CP054254|1|1|4016471-4016577|CRISPRCasFinder
CCCTCTCCCATAGGGAGAGGGAGCA	CACCCTAAAAAAGGCCATTGTCATTGCCTTTTTGCGTTTACCTTGCCCTCACCCCAA
CCCTCTCCCACAGGGAGAGGGAGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054254.1\|WP_008805607.1\|4004473_4005082_-\|methylthioribulose-1-phosphate-dehydratase	unknown	unknown	gnl\|CDD\|236415
NZ_CP054254.1\|WP_173818317.1\|4022978_4023722_+\|3-oxoacyl-ACP-reductase-FabG	unknown	unknown	gnl\|CDD\|235500
NZ_CP054254.1\|WP_008805591.1\|4024182_4024587_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP054254.1\|WP_032734954.1\|4021832_4022921_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|182570
NZ_CP054254.1\|WP_023287364.1\|4010480_4011290_+\|inositol-monophosphatase	unknown	unknown	gnl\|CDD\|223559
NZ_CP054254.1\|WP_008805604.1\|4008024_4009263_+\|cytosine-deaminase	unknown	unknown	gnl\|CDD\|181713
NZ_CP054254.1\|WP_008805590.1\|4024873_4026979_-\|carbon-starvation-protein-CstA	unknown	unknown	gnl\|CDD\|184976
NZ_CP054254.1\|WP_012542474.1\|4005533_4006796_+\|cytosine-permease	unknown	unknown	gnl\|CDD\|236821
NZ_CP054254.1\|WP_173818315.1\|4014114_4015143_-\|S-methyl-5-thioribose-1-phosphate-isomerase	unknown	unknown	gnl\|CDD\|273112
NZ_CP054254.1\|WP_008805596.1\|4018086_4019151_-\|sugar-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380528
NZ_CP054254.1\|WP_022065145.1\|4023905_4024208_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|224937
NZ_CP054254.1\|WP_162499995.1\|4009408_4010359_+\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|380501
NZ_CP054254.1\|WP_023339773.1\|4020166_4021669_-\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP054254.1\|WP_012542475.1\|4006792_4008028_+\|PucR-family-transcriptional-regulator-ligand-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|377939
NZ_CP054254.1\|WP_012968719.1\|4016741_4017983_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227601
NZ_CP054254.1\|WP_002893903.1\|4024583_4024781_-\|YbdD/YjiX-family-protein	unknown	unknown	gnl\|CDD\|225434
NZ_CP054254.1\|WP_008805601.1\|4011400_4012759_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340870
NZ_CP054254.1\|WP_173818313.1\|4012785_4014054_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366031
NZ_CP054254.1\|WP_172491523.1\|4019171_4020170_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
NZ_CP054254.1\|WP_008805598.1\|4015244_4016444_+\|S-methyl-5-thioribose-kinase	unknown	unknown	gnl\|CDD\|236561

Protein	Function_ID	Function_description	E-value
NZ_CP054254.1\|WP_008805607.1\|4004473_4005082_-\|methylthioribulose-1-phosphate-dehydratase	gnl\|CDD\|236415	PRK09220, PRK09220, methylthioribulose 1-phosphate dehydratase.	1.57474e-138
NZ_CP054254.1\|WP_173818317.1\|4022978_4023722_+\|3-oxoacyl-ACP-reductase-FabG	gnl\|CDD\|235500	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated.	1.85864e-85
NZ_CP054254.1\|WP_008805591.1\|4024182_4024587_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	4.5247e-10
NZ_CP054254.1\|WP_032734954.1\|4021832_4022921_+\|oxidoreductase	gnl\|CDD\|182570	PRK10586, PRK10586, putative oxidoreductase; Provisional.	0
NZ_CP054254.1\|WP_023287364.1\|4010480_4011290_+\|inositol-monophosphatase	gnl\|CDD\|223559	COG0483, SuhB, Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family [Carbohydrate transport and metabolism].	5.05569e-72
NZ_CP054254.1\|WP_008805604.1\|4008024_4009263_+\|cytosine-deaminase	gnl\|CDD\|181713	PRK09230, PRK09230, cytosine deaminase; Provisional.	0
NZ_CP054254.1\|WP_008805590.1\|4024873_4026979_-\|carbon-starvation-protein-CstA	gnl\|CDD\|184976	PRK15015, PRK15015, carbon starvation protein CstA.	0
NZ_CP054254.1\|WP_012542474.1\|4005533_4006796_+\|cytosine-permease	gnl\|CDD\|236821	PRK11017, codB, cytosine permease; Provisional.	0
NZ_CP054254.1\|WP_173818315.1\|4014114_4015143_-\|S-methyl-5-thioribose-1-phosphate-isomerase	gnl\|CDD\|273112	TIGR00512, methylthioribose-1-phosphate_isomerase_predicted, S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA. [Amino acid biosynthesis, Aspartate family].	8.49008e-149
NZ_CP054254.1\|WP_008805596.1\|4018086_4019151_-\|sugar-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380528	cd06305, PBP1_methylthioribose_binding-like, similar to methylthioribose-binding protein of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily. Proteins similar to methylthioribose-binding protein of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.	4.03307e-122
NZ_CP054254.1\|WP_022065145.1\|4023905_4024208_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|224937	COG2026, RelE, Cytotoxic translational repressor of toxin-antitoxin stability system [Translation, ribosomal structure and biogenesis / Cell division and chromosome partitioning].	9.18558e-09
NZ_CP054254.1\|WP_162499995.1\|4009408_4010359_+\|substrate-binding-domain-containing-protein	gnl\|CDD\|380501	cd06278, PBP1_LacI-like, ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.	1.47591e-94
NZ_CP054254.1\|WP_023339773.1\|4020166_4021669_-\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
NZ_CP054254.1\|WP_012542475.1\|4006792_4008028_+\|PucR-family-transcriptional-regulator-ligand-binding-domain-containing-protein	gnl\|CDD\|377939	pfam07905, PucR, Purine catabolism regulatory protein-like family. The bacterial proteins found in this family are similar to the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR). PucR is thought to be a transcriptional activator involved in the induction of the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression. The other members of this family are also annotated as being putative regulatory proteins.	1.78324e-33
NZ_CP054254.1\|WP_012968719.1\|4016741_4017983_-\|hypothetical-protein	gnl\|CDD\|227601	COG5276, COG5276, Uncharacterized conserved protein [Function unknown].	2.26518e-148
NZ_CP054254.1\|WP_002893903.1\|4024583_4024781_-\|YbdD/YjiX-family-protein	gnl\|CDD\|225434	COG2879, COG2879, Uncharacterized small protein [Function unknown].	1.33159e-37
NZ_CP054254.1\|WP_008805601.1\|4011400_4012759_+\|MFS-transporter	gnl\|CDD\|340870	cd17312, MFS_OPA_SLC37, Organophosphate:Pi antiporter/Solute Carrier family 37 of the Major Facilitator Superfamily of transporters. Organophosphate:Pi antiporters (OPA) are integral membrane proteins responsible for the transport of specific organophosphates or sugar phosphates across biological membranes with the simultaneous translocation of inorganic phosphate into the opposite direction. The OPA family is also called solute carrier family 37 (SLC37) in vertebrates. Members include glucose-6-phosphate (Glc6P) transporter (also called translocase or exchanger), glycerol-3-phosphate permease, 2-phosphonopropionate transporter, phosphoglycerate transporter, as well as membrane sensor protein UhpC from Escherichia coli. UhpC is both a sensor and a transport protein; it recognizes external Glc6P and induces transport by UhpT, and it can also transport Glc6P. Vertebrates contain four SLC37 or sugar-phosphate exchange (SPX) proteins: SLC37A1 (SPX1), SLC37A2 (SPX2), SLC37A3 (SPX3), and SLC37AA4 (SPX4). The OPA/SLC37 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	8.48585e-128
NZ_CP054254.1\|WP_173818313.1\|4012785_4014054_+\|histidine-phosphatase-family-protein	gnl\|CDD\|366031	pfam00328, His_Phos_2, Histidine phosphatase superfamily (branch 2). The histidine phosphatase superfamily is so named because catalysis centers on a conserved His residue that is transiently phosphorylated during the catalytic cycle. Other conserved residues contribute to a 'phosphate pocket' and interact with the phospho group of substrate before, during and after its transfer to the His residue. Structure and sequence analyses show that different families contribute different additional residues to the 'phosphate pocket' and, more surprisingly, differ in the position, in sequence and in three dimensions, of a catalytically essential acidic residue. The superfamily may be divided into two main branches.The smaller branch 2 contains predominantly eukaryotic proteins. The catalytic functions in members include phytase, glucose-1-phosphatase and multiple inositol polyphosphate phosphatase. The in vivo roles of the mammalian acid phosphatases in branch 2 are not fully understood, although activity against lysophosphatidic acid and tyrosine-phosphorylated proteins has been demonstrated.	3.60208e-59
NZ_CP054254.1\|WP_172491523.1\|4019171_4020170_-\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	3.33397e-69
NZ_CP054254.1\|WP_008805598.1\|4015244_4016444_+\|S-methyl-5-thioribose-kinase	gnl\|CDD\|236561	PRK09550, mtnK, methylthioribose kinase; Reviewed.	0

>NZ_CP054254.1|WP_008805598.1|4015244_4016444_+|S-methyl-5-thioribose-kinase
MSQYHTFTAHDAVAYAQQFAGIDNPSELVSAQEVGDGNLNLVFKVFDRQGVSRAIVKQALPYVRCVGESWPLTLDRARLEAQTLVAHYQHSPQHTVKIHHFDPELAVMVMEDLSDHRIWRGELIANVYYPQAARQLGDYLAQVLFHTSDFYLHPHEKKAQVAQFSNPAMCEITEDLFFNDPYQIHERNNYPAELEADVAALRDDAQLKLAVAALKHRFFAHAEALLHGDIHSGSIFVAEGSLKAIDAEFGYFGPIGFDIGTAIGNLLLNYCGLPGQLGIRDAAAAREQRLNDIHQLWTTFAERFQALAAEKTRDAALAYPGYASAFLKKVWADAVGFCGSELIRRSVGLSHVADIDTIQDDAMRHECLRHAITLGKALIVLAERIDSVDELLARVRQYS
>NZ_CP054254.1|WP_173818315.1|4014114_4015143_-|S-methyl-5-thioribose-1-phosphate-isomerase
MQTLQTTSLRVSENQLFILDQQALPQEKRWLAADNIALLVDHIHALRVRGAPLIGLSASLLLALLAQRGLNRDALQQALETLRAARPTAVNLMNNLDRMKQALAREDYPQALEAEALRLVEEDKQLCDRIAEAGSALVKPGSRLLTHCNTGGLATAGVGTALGVIALAHRQGKVASVWVDETRPLLQGGRLTAWELGELGVPYQLITDSMAASLMAQGQVDAVWVGADRIAANGDVANKIGTYSLAVLAHYHQIPFYVAAPQTTLDRHCPNGAAIPIEQRAAAEVTGVAGSFGAVQWAPTGAAVYNPAFDVTPAGLVSSWVLDSGVVTPAQVAAGAFAPDNG
>NZ_CP054254.1|WP_173818313.1|4012785_4014054_+|histidine-phosphatase-family-protein
MMPARHQGLLRLFIACALPLLALQSAAAADWQLEKVVELSRHGIRPPTAGNREAIEAATGRPWTEWTTHDGELTGHGYAAVVNKGREEGQHYRQLGLLQAGCPTAESIYVRASPLQRTRATAQALVDGAFPGCGVAIHYVSGDADPLFQTDKFAATQTDPARQLAAVKEKAGDLAQRRQALAPAIQLLQQAVCQADKPCPIFDTPWQVEQSKSGKTTISGLSVMANMVETLRLGWSENLPLSQLAWGKITQARQITALLPMLTENYDLSNDVLYTAQKRGSVLLNAMLDGVKPEANPNVRWLLLVAHDTNIAMVRTLMNFSWQLPGYSRGNIPPGSSLVLERWRNAKSGERYLRVYFQAQGLDDLRRLQTPDAQHPMLRQEWRQPGCRQTDVGTLCPFQAAITALGQRIDRSSAPAVAMVLP
>NZ_CP054254.1|WP_008805601.1|4011400_4012759_+|MFS-transporter
MSGIIAFFRASPPKAGAAFDEQRFRRVRWQTFIAMTLAYVTFYVCRLSFTVAKSALVDLGITPTELGMIGSTLFFSYAIGKLVNGFIADHANVVRYMSLGLLLSAGMNLMMGMTTNALLLAIFWGINGWAQSMGVGPCAVSLARWYGVKERGTFYGIWSTAHNIGEAVTYMVIAAVIAGFGWQMGYLSTAALGAAGVVLLVLFMHDSPQSSGFPSINVIRDEPQEEAEARGSVFKNQLLALRNPALWTLALASAFMYIDRYAVNSWGIFFLEQDKAYSTLEASGIIGVNAIAGIAGTIIAGMLSDRFFPRNRSVMAGFISLLNTAGFALMLWSPHNYYTDILAMIIFGATIGALTCFLGGLIAVDISSRKAAGAALGTIGIASYAGAGLGEFLTGIIIDKTAILENGKTLYDFSTLALFWVGTGLGSALLCFTTAAIVARRHAVERQTSFSS
>NZ_CP054254.1|WP_023287364.1|4010480_4011290_+|inositol-monophosphatase
MQSQESEALQARYRLACELAKAGAELAFEYYQQREALTVDHKGDDLQDVVSVADKRVEAFVKQRIQSAFPQDGFLGEESGTRLPDARILWVVDPIDGTSCFLNGLHTWCLSLAIVADGEPVIGVVYDPNHRELFHALRGHGAWLNDAPIRPHPATTVKEGVMGVGTSHRVTPADFLPFLQALLSDGGMFIRNGSGALMSAWAAAGRLIGYYEPHMNPWDALPGLVLMREAGGASNDFLAQEGIQRGNPLLLASQTLYPQLKKMIPQPLH
>NZ_CP054254.1|WP_162499995.1|4009408_4010359_+|substrate-binding-domain-containing-protein
MARLAGVSRSAVSRTFTPGASVSEKTRQKVLSAAEALGYQVNIIARTMITGSSNFIGIVTAGFDNPFRSKLLAPLVHQLALNGFMPLLMNADDPQQLAPSLKQLLSYHVAGVIITSGAPPLSLAEEYLARKIPVTLINRHADLAGCDRVCSDNAQGAKLVADLFSRRGWQQVGFIGENRENFSTRQRYEAFIARTSGMAVISRFCDGGGYQAGYQAARELVAENPGVQALFCATDMLALGALDGLRDAPAPLPAIVGFDDIPQADWQPYQLTTVQQNTALLAHHAVDLLMTRIARFSLPSRHREVPVKLIIRHSAK
>NZ_CP054254.1|WP_008805604.1|4008024_4009263_+|cytosine-deaminase
MKIINARLRRQEALFTLDLQDGMIHRISAQAAMQSADAGDIDAQGRLAIPPFVEPHIHLDATLTAGEPEWNRSGTLFEGITRWSQRKASITPEDTRQRALKTIGMLRDFGVQHVRTHVDVTDPSLAALKALLAVKQEAADLIDLQIVAFPQEGIESYPDGRGLMTRAIEMGADVVGGIPHYENTRDKGVSSVMFLMDLAQRYGRLVDVHCDEIDDPQSRFLEVLAEEARVRGMGAQVTASHTCAMGSYDNAYCSKLFRLLKASGINFISCPTESIHLQGRFDSWPKRRGVTRVAELDRAGINVCFAQDSIQDPWYPLGNGNILRILDAGLHICHMLGYDDLQRCLDFVTDNSARALCLGDNYGLAEGRPANLLILDAENDYEAVRRQARVLTSIRHGKVILQREVEHIRYPA
>NZ_CP054254.1|WP_012542475.1|4006792_4008028_+|PucR-family-transcriptional-regulator-ligand-binding-domain-containing-protein
MSLTVSELLALEGLSALRLRAGKQGLQRAVRWYYVAENEHIAEWIMGGELVFITGINHPRDEANLIQLLMEGKQRGIAGMVILTGEAYIHAIPATLIALADELGIPLIEQPYLLKMVIVTERIGTALVRSENALQSQRDILMQLVTGDYPDLQMLHQRALHQQLDFTRPLRLAALRLEGLSRLFRQFPPEQAEAWLLQAHRSVRQQLQQQLNQQGNPFPLLERSNMFLFLLPDEEGEGFQQKKWLQQWLQALADGEEGLSLLCGLSAPVRQLQGYPRALSQARQALDLCDTLRPTQRISDYQQLGFIKLLSAVSDPALLNDFMHDTLGCLIEPGRKAPWLLLETLETLLQENGNVVRAADRLGLHRNTLHQRIQRIEKLTGYPVSHPQFHLNASVALVIWRLSQNHLQDPP
>NZ_CP054254.1|WP_012542474.1|4005533_4006796_+|cytosine-permease
MSNSNDFPLVEAPAAGRKGVFSIAMVLFSFTFFTGTMFAGGKLGVSFSIVNLLWIAVIGNALLALYAASLGWIAARSGLNTVLMGRFCFGEIGSKLADFILGFAELGWYAWGTATVAISLVKILALPEALTQPLMVLFGILFCVTALVGYKGLDALSRLSVPLMFVLLMVSMYLALHHAGGWQAMTHIAPSDTMTWSAAITMVFGTFASGATQATNWTRLANSSRTAILASMGSFLIGNGLMIVAGAWCAIVYQQADIVEVLILQGLSVAAVIMLCLNLLTIQGPTIYNVSAAACHLLRSERRRTLTLAAAGVGIVLAIGGMYEMLIPFLVLLGSIIPPIGGVILADYWFARGGRYPLLQNARLPRFNWLGLGAYAAGAVVAYLSPWIAPLVGITVSALVYIVLSLLSKRQPAAVAEQEP
>NZ_CP054254.1|WP_008805607.1|4004473_4005082_-|methylthioribulose-1-phosphate-dehydratase
MWQERLAQLVTTCHWIGAKGWAPATGGNMSVRQDDTWCWLSESGRDKGSLTTEDFLQVEIATNQAPSGRKPSAETGLHTLVYRLFPEANVVLHVHTVNATVLSRIEKSDTLALQGYEMQKTLSGQHSHLDTVPVAIFDNDQDIDALAARIADYAQTRPLRYGFLLRGHGLTCWGKDIQEARRQLEGLEFLFECELMRRRYEP
>NZ_CP054254.1|WP_012968719.1|4016741_4017983_-|hypothetical-protein
MSALPSPEYSRNMRLIGHSDQGGRPDGVQLMVHRGFAYIGHMVSQGFSVVDVRDPTRPTTVNYIAAPPGTWNVHLQAHDDLLLVINARDLFADARFADEKVYYTRSVGDTVSDVQDKGWSAGLRIFDISTPAQPREISFLSLNGIGIHRIWYVGGRWAYVSALIDGFTDYIFLTIDLADPRKPEVAGRWWLPGMHQAGGETPDWPQGKRYALHHAIIAGDTAYGSWRDGGLTLLDVKDRTQPTLISHRNWSPPFGGGTHTALPLPDRDLLVVLDEAVLDNQEDGEKLIWLFDIREPSNPVSIATFPPPDEIDYVAKGAHFGPHNLHENRPGSFVSSTLIFATYQNAGVRAYDISNPYRPLETGALVPAAPKTMMDTRPGRPQVIQSCDVFVDAQGIIYSTDYNGGLSVIEYLG
>NZ_CP054254.1|WP_008805596.1|4018086_4019151_-|sugar-ABC-transporter-substrate-binding-protein
MKKIALSLMTLGLLQSTAALATAPTPVPAAIAEHSGPIRIAVIRNLGSDDNTTQFVSGALQEGKKLGFKISTFLSNGDDAKFQDFVNQAISQKYDGIILSQGRDPYSTALVKKAVDAGIKVAVFDTAVSGEIPGVTVSQQDDASLTELSFGQLVKDFNGKANIVKLWVAGFPPMERRQAAYQTLLKQNPGIKELESIGAVSSDVQGDTANKVGAILAKYPKGKIDAIWGTWDAFSQGAYKALKENGRTEIKLYSIDISNQDLQLMREAGSPWKVSVAVDPKLIGATNVRLIANKIAGEPTPATYDFKAAAIPQALLAAQPGAVNVASLGKIIPGWGQTEDFIAPWFATLEAKNK
>NZ_CP054254.1|WP_172491523.1|4019171_4020170_-|ABC-transporter-permease
MSEALAVNATVSGRQRFFDFLYKWGMLLTVVLLVAVFGLASDNFLDPFNIINILRSIAIVTVIAIGVSISLTIGGFDLSVGSTASLANALVISLFVWHGLGTTEAILITLALCTLVGLFNAFLIVVLRIPDMLATLASLFVIQGVAMTYSYGGSITENMVLPSGEMAEGTIPAGFGALGQVPTIVIIMLVVTLVAQLALSFTTHGRRMYAIGGNPEAARLSGLRITRYKVAAYVIASLLAGLGGILLASRIGSSQVNAGGGYLMDAVAAAWIGFSLAGSGKPNALGTLVGAVILGVLSNGLVMLSVPYYAMDIIKGLVLAGALALTYFQRRT
>NZ_CP054254.1|WP_023339773.1|4020166_4021669_-|sugar-ABC-transporter-ATP-binding-protein
MSANRLEMHNISLAFSGFQALNKVDFTLHGGSVHALTGANGAGKSTLMAVLCGTHAHYEGEVTINNQPVIIRSPRDAKQLGIHLVQQEVDVALVPGLSIAENIMLDRLAEPGMAFRWSRVRQLAREALAQLDVALDVRRSIDSCTLAEKQQILLARALSHHCRFLILDEPTAPLDQHESERLFAVVRRLQQQGIGVVFISHRIHELKAICDTLTVLRDGRLIESGPMAPLSGEQIVEKMLGHELSDIFPPPRPPHGEEVLLQIDGLHDEALLQDISLRLRKGEILGIAGLAGAGKTELCKALFGASKSRVQRGELNGQPWRPRDPADSVGRGLALVPEERRKEGIFIEEPIAMNLAVSADNSFSRWSLFGHRQAWRWAEEVIARLGVRATGPGQMLRRLSGGNQQKVAIGKWLRSHANVLIFDEPTKGVDVKAKTDLFMLIDGLAREGKGVIYASGEFAELVGLCDRICVLWDGRIVAEIPGAEAREETLLYYSTGGAAA
>NZ_CP054254.1|WP_032734954.1|4021832_4022921_+|oxidoreductase
MSNSDIRVVPGPANYFSHPGSLERLSDFFSADQLSRAVWVYGERALAGAEPFLPAAFYLPEAKKIRFPGHCSERDVAALVQASGDDRAVVIGVGGGALLDSAKVLARRLGVPLVAIPTIAATCAAWTPLSVWYSDAGQALNFEIFDDANFLVLVEPRIILNAPAEYLLAGIGDTLAKWYEAVVLAPQPEALPLTVRLGINGALAIRDVLLASSETALADQSRGDLTQAFRDVVEAIIAGGGMVGGLGERYTRVAAAHAVHNGLTVLPQTDKFLHGTKVAYGILVQSALLAQDDVLAQLVQAYQRFNLPTTLAALEVDINNRTELDRVIAHTLRPGESIHYLPVTLTPEVLRAAFEKVEYFSR
>NZ_CP054254.1|WP_173818317.1|4022978_4023722_+|3-oxoacyl-ACP-reductase-FabG
MQIDLTGKKALVTGASRGLGRAIALSLARAGADVVITYEKSADKAQAVADEIKALGRHGEAVQADSASAQAIQDAVTHAARSLGGLDILVNNAGIARGGPLESMTLADIDALINVNIRGVVIATQEALVHMADGGRIINIGSCLANRVAMPGIAVYAMTKSALNALTRGLARDLGPRGITVNLVHPGPTNSDMNPEDGEQAEAQRQMIAVGHYGQPEDIAAAVTFLARPAAGQISGTGLDVDGGLNA
>NZ_CP054254.1|WP_022065145.1|4023905_4024208_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MKIVWSKTADKPFSKIDNRYKSRIKSRLEKMDDKASPISDIKKLSSPENHYRLRLGDYRVIYTFGDPPGDTCYVVAVKRRTTTTYLHEEDTEYDYSVHQG
>NZ_CP054254.1|WP_008805591.1|4024182_4024587_+|helix-turn-helix-transcriptional-regulator
MTIQYIKDEEGKDQYVVIPYSDYFRMRLALLEYDDEDESDWEDIPYESDIYDNVMLPGEVCDVMHKENVSLQAAWRILRGLSQQEVAAKLGISQSAVSQLEALDSRPQKRTREKLAAIYGCTQEQISLYLPKEG
>NZ_CP054254.1|WP_002893903.1|4024583_4024781_-|YbdD/YjiX-family-protein
MFDTLSKAGKYLGQAAKMMIGVPDYDNYVEHMRITHPDQTPMTYEEFFRERQDARYGGKGGAKCC
>NZ_CP054254.1|WP_008805590.1|4024873_4026979_-|carbon-starvation-protein-CstA
MNNSGKYLIWTLLSVIGAFALGYIALNRGEQINALWIVVAAVCVYLIAYRFYGLYIAKTVLGVDPTRMTPAVRHNDGLDYVPTDKKVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWILAGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGPTAGVLALVACFMIMVIILAVLAMIVVKALTHSPWGTYTVAFTIPLAIFMGIYIRYLRPGRIGEVSVIGLVMLVFAIISGGWVAESPTWAPWFDYTGVQLTWILVGYGFVAAVLPVWLLLAPRDYLSTFLKIGTIVGLAIGILIMRPTLTMPALTKFVDGTGPVWSGNLFPFLFITIACGAVSGFHALISSGTTPKMLANEGQACFIGYGGMLMESFVAIMALVAACIIDPGVYFAMNSPMAVLAPAGTTDVVASAAQVVSGWGFSITPDTLHQIASEVGEQSIISRAGGAPTLAVGMAYILHGSLGGLMDVSFWYHFAILFEALFILTAVDAGTRAARFMLQDLLGVISPGLKKTSSLPANLLATALCVLAWGYFLHQGVVDPLGGINTLWPLFGIANQMLAGMALMLCAVVLFKMKRQRYAWVALLPTSWLLICTLTAGWQKSFSPDTKVGFLAIANKFQAMIDSGNIPPQYTESQLAQLVFNNRLDAGLTIFFMIVVVVLALFSIKTALAALKEDKPTAKETPYQAMPADAQTITAQAKRAH

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Crispr_ID: NZ_CP054254_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP054254_2

4758738-4758843

Orphan

Consensus_repeat	Method
GGGAGAGGGTTGGGGTGAGGGCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP054254_2

>merge|NZ_CP054254|2|4758738-4758843|CRISPRCasFinder
GGGAGAGGGTTGGGGTGAGGGCAAGGTAAATGCAAAAAGGCAACGCAAGTTGCCTTTTTTAGGGTTTGCTCCCTCTCCCACCGGGAGAGGGTTGGGGTGAGGGCAA

>NZ_CP054254|2|2|4758738-4758843|CRISPRCasFinder
GGGAGAGGGTTGGGGTGAGGGCAA	GGTAAATGCAAAAAGGCAACGCAAGTTGCCTTTTTTAGGGTTTGCTCCCTCTCCCACC
GGGAGAGGGTTGGGGTGAGGGCAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054254.1\|WP_004886539.1\|4764333_4765053_-\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
NZ_CP054254.1\|WP_023322048.1\|4748074_4749433_-\|cell-envelope-integrity-protein-CreD	unknown	unknown	gnl\|CDD\|236960
NZ_CP054254.1\|WP_008807517.1\|4753929_4754445_+\|inosine/xanthosine-triphosphatase	unknown	unknown	gnl\|CDD\|235336
NZ_CP054254.1\|WP_012542918.1\|4754431_4754761_-\|trp-operon-repressor	unknown	unknown	gnl\|CDD\|179289
NZ_CP054254.1\|WP_032731599.1\|4750917_4751607_-\|two-component-system-response-regulator-CreB	unknown	unknown	gnl\|CDD\|236838
NZ_CP054254.1\|WP_008807516.1\|4753168_4753816_-\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase-GpmB	unknown	unknown	gnl\|CDD\|179583
NZ_CP054254.1\|WP_022065752.1\|4766431_4767754_-\|thymidine-phosphorylase	unknown	unknown	gnl\|CDD\|180276
NZ_CP054254.1\|WP_117122477.1\|4754849_4756787_-\|murein-transglycosylase	unknown	unknown	gnl\|CDD\|183236
NZ_CP054254.1\|WP_012542920.1\|4762580_4763228_+\|YtjB-family-periplasmic-protein	unknown	unknown	gnl\|CDD\|236885
NZ_CP054254.1\|WP_004146033.1\|4767867_4768668_-\|deoxyribose-phosphate-aldolase	unknown	unknown	gnl\|CDD\|235387
NZ_CP054254.1\|WP_008807526.1\|4769063_4769849_-\|metal-dependent-hydrolase	unknown	unknown	gnl\|CDD\|171118
NZ_CP054254.1\|WP_099216782.1\|4757015_4758683_+\|energy-dependent-translational-throttle-protein-EttA	unknown	unknown	gnl\|CDD\|236992
NZ_CP054254.1\|WP_016160264.1\|4765155_4766379_-\|phosphopentomutase	unknown	unknown	gnl\|CDD\|235430
NZ_CP054254.1\|WP_049153333.1\|4749493_4750918_-\|two-component-system-sensor-histidine-kinase-CreC	unknown	unknown	gnl\|CDD\|236846
NZ_CP054254.1\|WP_117122478.1\|4763227_4764244_+\|lipoate--protein-ligase-LplA	unknown	unknown	gnl\|CDD\|179655
NZ_CP054254.1\|WP_002887800.1\|4760112_4761495_-\|DNA-repair-protein-RadA	unknown	unknown	gnl\|CDD\|273067
NZ_CP054254.1\|WP_016160266.1\|4761504_4762476_-\|phosphoserine-phosphatase	unknown	unknown	gnl\|CDD\|182988
NZ_CP054254.1\|WP_012542917.1\|4751619_4752093_-\|protein-CreA	unknown	unknown	gnl\|CDD\|236752
NZ_CP054254.1\|WP_002887802.1\|4758858_4760091_-\|multifunctional-transcriptional-regulator/nicotinamide-nucleotide-adenylyltransferase/ribosylnicotinamide-kinase-NadR	unknown	unknown	gnl\|CDD\|236151
NZ_CP054254.1\|WP_155007330.1\|4752302_4753172_+\|MDR-efflux-pump-AcrAB-transcriptional-activator-RobA	unknown	unknown	gnl\|CDD\|185076

Protein	Function_ID	Function_description	E-value
NZ_CP054254.1\|WP_004886539.1\|4764333_4765053_-\|purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	5.29166e-174
NZ_CP054254.1\|WP_023322048.1\|4748074_4749433_-\|cell-envelope-integrity-protein-CreD	gnl\|CDD\|236960	PRK11715, PRK11715, cell envelope integrity protein CreD.	0
NZ_CP054254.1\|WP_008807517.1\|4753929_4754445_+\|inosine/xanthosine-triphosphatase	gnl\|CDD\|235336	PRK05074, PRK05074, non-canonical purine NTP phosphatase.	7.98477e-112
NZ_CP054254.1\|WP_012542918.1\|4754431_4754761_-\|trp-operon-repressor	gnl\|CDD\|179289	PRK01381, PRK01381, trp operon repressor.	3.49334e-51
NZ_CP054254.1\|WP_032731599.1\|4750917_4751607_-\|two-component-system-response-regulator-CreB	gnl\|CDD\|236838	PRK11083, PRK11083, DNA-binding response regulator CreB; Provisional.	4.50535e-156
NZ_CP054254.1\|WP_008807516.1\|4753168_4753816_-\|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase-GpmB	gnl\|CDD\|179583	PRK03482, PRK03482, phosphoglycerate mutase GpmB.	6.63469e-161
NZ_CP054254.1\|WP_022065752.1\|4766431_4767754_-\|thymidine-phosphorylase	gnl\|CDD\|180276	PRK05820, deoA, thymidine phosphorylase; Reviewed.	0
NZ_CP054254.1\|WP_117122477.1\|4754849_4756787_-\|murein-transglycosylase	gnl\|CDD\|183236	PRK11619, PRK11619, lytic murein transglycosylase; Provisional.	0
NZ_CP054254.1\|WP_012542920.1\|4762580_4763228_+\|YtjB-family-periplasmic-protein	gnl\|CDD\|236885	PRK11246, PRK11246, YtjB family periplasmic protein.	1.09556e-147
NZ_CP054254.1\|WP_004146033.1\|4767867_4768668_-\|deoxyribose-phosphate-aldolase	gnl\|CDD\|235387	PRK05283, PRK05283, deoxyribose-phosphate aldolase; Provisional.	0
NZ_CP054254.1\|WP_008807526.1\|4769063_4769849_-\|metal-dependent-hydrolase	gnl\|CDD\|171118	PRK11449, PRK11449, metal-dependent hydrolase.	1.1037e-149
NZ_CP054254.1\|WP_099216782.1\|4757015_4758683_+\|energy-dependent-translational-throttle-protein-EttA	gnl\|CDD\|236992	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed.	0
NZ_CP054254.1\|WP_016160264.1\|4765155_4766379_-\|phosphopentomutase	gnl\|CDD\|235430	PRK05362, PRK05362, phosphopentomutase; Provisional.	0
NZ_CP054254.1\|WP_049153333.1\|4749493_4750918_-\|two-component-system-sensor-histidine-kinase-CreC	gnl\|CDD\|236846	PRK11100, PRK11100, sensory histidine kinase CreC; Provisional.	0
NZ_CP054254.1\|WP_117122478.1\|4763227_4764244_+\|lipoate--protein-ligase-LplA	gnl\|CDD\|179655	PRK03822, lplA, lipoate-protein ligase A; Provisional.	0
NZ_CP054254.1\|WP_002887800.1\|4760112_4761495_-\|DNA-repair-protein-RadA	gnl\|CDD\|273067	TIGR00416, DNA_repair_protein_RadA_homolog, DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus (SP:P45266) and in Listeria monocytogenes (SP:Q48761) . for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP054254.1\|WP_016160266.1\|4761504_4762476_-\|phosphoserine-phosphatase	gnl\|CDD\|182988	PRK11133, serB, phosphoserine phosphatase; Provisional.	0
NZ_CP054254.1\|WP_012542917.1\|4751619_4752093_-\|protein-CreA	gnl\|CDD\|236752	PRK10756, PRK10756, protein CreA.	4.50228e-120
NZ_CP054254.1\|WP_002887802.1\|4758858_4760091_-\|multifunctional-transcriptional-regulator/nicotinamide-nucleotide-adenylyltransferase/ribosylnicotinamide-kinase-NadR	gnl\|CDD\|236151	PRK08099, PRK08099, multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR.	0
NZ_CP054254.1\|WP_155007330.1\|4752302_4753172_+\|MDR-efflux-pump-AcrAB-transcriptional-activator-RobA	gnl\|CDD\|185076	PRK15121, PRK15121, MDR efflux pump AcrAB transcriptional activator RobA.	0

>NZ_CP054254.1|WP_099216782.1|4757015_4758683_+|energy-dependent-translational-throttle-protein-EttA
MAQFVYTMHRVGKVVPPKRHILKNISLSFFPGAKIGVLGLNGAGKSTLLRIMAGIDTEIEGEARPQPAIKIGYLPQEPQLNPEHTVRESVEEAVAEVVNALKGLDEVYAKYAEPDADFDKLAAQQGKFEEIIQAHDGHNLNVQLERAADALRLPDWDAKIANLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLERFLHDFEGTVVAITHDRYFLDNVAGWILELDRGEGIPWEGNYSSWLEQKDQRLAQEASQEAARRKSIEKELEWVRQGAKGRQSKGKARLARFEELNNVEYQKRNETNELFIPPGARLGDKVLEVSHLRKSYGDRVLIDDLSFSVPKGAIVGIIGPNGAGKSTLFRMMSGQEQPDSGTITLGETVKLASVDQFRDAMDNSKTVWEEVSGGLDIMKIGNTEMPSRAYVGRFNFKGVDQGKRVGELSGGERGRLHLAKLLQVGGNVLLLDEPTNDLDIETLRALENALLEFPGCAMVISHDRWFLDRIATHILDYQDEGKVEFFEGNFTEYEEYKKRTLGADALEPKRIKYKRIAK
>NZ_CP054254.1|WP_117122477.1|4754849_4756787_-|murein-transglycosylase
MEKAKKMAWHLLAASVGLLTLSQLAHADSLDEQRNRYAQIKQAWDNRQMDVVDQLMPTLSTYPLYPYLQYRQITDDLMNQPALVVKNFIDANPTLPPARSLRSRFVNELARRSDWRGLLAFSPDKPTSTEAQCNYYYAKLSVGQSQEAWSGAKDLWLTGKNQPGACEPLFNAWRDSGQQDPLAYLERIRLAMKAGNIGLVKSLAQQMPGNYQSIASAVVALANDPNSVLTFARTTGATDFTRQMAAVAFASVARQDVENARLMIPSLVQAQQLNEDQTQELRDIVAWRLMGTDVTEEQAIWRDDAIMRSQSTPLVERRVRMALGTGDRHGLNTWLARLPMEAKEKDEWRYWQADLLLERGRDEEAQAILRSLMQQRGFYPMVAAQRLGEEYTFRIDKASGTIDPALASGPEMARVRELMYWNMDNTARTEWANLVTSRTKSQQAQLARYAFDQHWWDLSVQATIAGKLWDQLEERFPLAYNDLFARYISGKDIPQSYAMAIARQESAWNPKVRSPVGASGLMQIMPGTATHTVSMFSIPGYSGPSQLLDPETNINIGTSYLQYVYQQFGNNRIYASAAYNAGPGRVRTWQGNSAGRIDAVAFIESIPFSETRGYVKNVLSYDAYYRYFMGQQDKLFSDAEWRQRY
>NZ_CP054254.1|WP_012542918.1|4754431_4754761_-|trp-operon-repressor
MTQQSPYSAAVAEQRHQEWLRFVALLQQAYAEDLHLPLLQLMLTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRGSNSLKSAPAELRQWLEQTLLTSDK
>NZ_CP054254.1|WP_008807517.1|4753929_4754445_+|inosine/xanthosine-triphosphatase
MHHVVSATTNPAKIQAILQAFNEIFGEGSCHIESVSVESGVPEQPFGSEETRAGARNRVANARLVQPSADFWVAIEAGIDDGSTFSWVVIESADRRGEARSATLPLPEVILEQVRAGEALGPVMSQYTGIDQIGRKEGAIGVFTGGKLTRSSVYHQAVVLALSPFHNAIYR
>NZ_CP054254.1|WP_008807516.1|4753168_4753816_-|2,3-diphosphoglycerate-dependent-phosphoglycerate-mutase-GpmB
MLQVYLVRHGETQWNAERRIQGQSDSPLTAHGERQAWQVGERARTLGITHIITSDLGRTRRTAEIIAEACGCSVIADARLRELDMGVLEKRHIDSLSDEEEGWRRQLVNGTPDGRIPQGESMQELSERMHAALASCLELPAGSRPLLVSHGIALGCLVSTILGLPAYAERRLRLRNCSISRVDYQQSPWLASGWVVETAGDVSHLDAPAMDELQR
>NZ_CP054254.1|WP_155007330.1|4752302_4753172_+|MDR-efflux-pump-AcrAB-transcriptional-activator-RobA
MDQAGIIRDLLSWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFSLTPALYRRSPDWSSFGMRPPLRLGEFTLPKHAFIALPTTQLLGVTQSYTCKLEEISDFRNQMRVQFWRDFLGNSPSIPPVLYGLHEPRPSLEKDDEQEVFYTTALTPEMANGHLQNAHPVTLEGGEYVMFTYEGLGTGLQEFILTVYGTCMPMLNLTRRKGLDIERFYPEDENRDQATPIQLRCEYLIPIRR
>NZ_CP054254.1|WP_012542917.1|4751619_4752093_-|protein-CreA
MKYKKFAMGLLLLAGCQMAQAEQIGSVDTVFKWLGPDHKIVVEAFDDPDVQNVTCYISRAKTGGIKGGLGLAEDTSDAAISCQQVGPIELTDKIKNGKSQGDVVFQKRTSLVFKKLQVVRFYDAKRNALVYLTYSDKVVDGSPKNAISAVPIMPWNK
>NZ_CP054254.1|WP_032731599.1|4750917_4751607_-|two-component-system-response-regulator-CreB
MQQPRIWLVEDEQSIADTLVYMLQQEGFQVTVFGRGLPALEAAAHQAPDVAILDVGLPDISGFELCRRMLTRYPALPVLFLTARSDEVDKLLGLEIGADDYIAKPFSPREVCARVRTVLRRLQKFAAPSPVVRVGEFVLDEQAASISWFGQPLNLTRYEFLLLKTLLHAPGRVFSRQQLMELVWSDAWESLDRTVDTHIKTLRAKLRAVNPEVTPINTHRGMGYSLGRG
>NZ_CP054254.1|WP_049153333.1|4749493_4750918_-|two-component-system-sensor-histidine-kinase-CreC
MRIGMRLLLGYFLIVAIAAWFVLSIFVQEVKPGVRGATEGTLNDTATLLAALAREDLLAANPQQGRLAQAFQQLNQQPINAHIGGIKKVRNEYRVYLTDARGKVVFDSSGQATGQDYSRWNDVWLTLRGQYGARSTRSDPHDETSSVMYIAAPVMDKGRIIGVLSVGKPNLAMTPVIKRSERRILWAGGALLGIALLIGVGVVWWINFSIGKLVRYADSVTAERPLPLPEVGSSELRKLAQALESMRVKLEGKNAIENYVYDLTHELKSPLAAIRGAAEILREGPPPEVAARFTDNILAQNTRMQLLVERLLQQARLESRLEIKPQPVSIDALYQRLTEERDIALAAKAITLRWRESGMLVNGDGELLAQALGNLLDNAIDFTPQGGEIALAAEKRNEEVQLSVIDNGCGIPDYALERIFERFYSLPREDGHKSSGLGLAFVREVARLHHGDINLHNRPEGGVVATLRLHRPFT
>NZ_CP054254.1|WP_023322048.1|4748074_4749433_-|cell-envelope-integrity-protein-CreD
MLKSPLFWKITTLIGCVVLLSLPLMMVRELINERADYRSEVVDAIEQSTSGSQKLAGPLIAIPVTETLTRMENQKEVNYQRSWVYYWLPESLAVTGKQTVESRRVGIYSGQVWHNALQIKASFDPLRLAALRKTNIVLGPPRLVVSVGDARGIGAIHAPEVNGNVLSVEPGLGISGDGAGIHMPMPALAEDNKPLEIAFSLDLNGTGEFSLVPIGRNSELQLTSNWPHPGFLGSFLPTQREVSAAGYRAHWQSSWFANDMGSYFKDDMEIPWSRLPAFSADVMSLADQYQLTDRATKYAILLIGLTFMAFFVFESLTRRPLHPMQYLLVGLSLVLFYLVLLALSEHVGFTAAWLAASLSGAVMNGVYLQAVLRGWRNSLLFVAALLLLDGVMWFLLHSEDSALLLGTGVLVLALSVLMFLTRRVDWYALSLPKGSAPPPPAADDDKLRLWKE
>NZ_CP054254.1|WP_002887802.1|4758858_4760091_-|multifunctional-transcriptional-regulator/nicotinamide-nucleotide-adenylyltransferase/ribosylnicotinamide-kinase-NadR
MSSFDYLKSAIKQKGCTLQQVAEASGMTKGYLSQLLNAKIKSPSAQKLEALHRFLGLEFPRRQKSVGVVFGKFYPLHTGHIYLIQRACSQVDELHIIMGYDDTRDRELFEESAMSQQPTVPDRLRWLLQTFKYQKNIRIHAFNEEGMEPYPHGWDVWSHGIRAFMSEKGIEPNRIYTSEEADAPQYLEHLGIETVLIDPKRTFMNISGGQIRENPFRYWEYIPTEVKPFFVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGRDYVFSHLGGDEMALQYSDYDKIALGHAQYIDFAVKYANKVAFIDTDFVSTQAFCLKYEGREHPFVQALIDEYRFDLVILLENNTPWVADGLRSLGSSVDRKEFQSLLVSLLKENEIEFVHVKESDYDARFLRCVELVKQLMGEQG
>NZ_CP054254.1|WP_002887800.1|4760112_4761495_-|DNA-repair-protein-RadA
MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEMRIAASPQVARNERLSGYAGNAGVSKVQKLSDISLEALPRFSTGFKEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLAEGMKTLYVTGEESLQQVAMRAHRLGLPTANLNMLSETSIEQICQIADEEKPQLMVIDSIQVMHMADVQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEITSGSSVMVVWEGTRPLLVEIQALVDHSMMSNPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQDLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKVPEGMQIFGVKKLSDALSVFDDL
>NZ_CP054254.1|WP_016160266.1|4761504_4762476_-|phosphoserine-phosphatase
MPNSLTWCDLPEDVSLWPGLPLSLSGDEVMPLDYHAGRSGWLLYGRGLNKRRLTDWQRELGAALVIVASWVVEDYQVIRLAGSLTPRATRLAHEAGLDVAPLGKIPHLRTPGLLVMDMDSTAIQIECIDEIAKLAGTGELVSEVTERAMRGELDFTASLRQRVATLKDADASILLQVRDALPLMPGLAQLVLKLETLGWKVAIASGGFTFFAEYLRDKLHLDAVFANELEIRDGKLTGNVLGDIVDAKYKANTLRKLAEKYEIPTAQTVAIGDGANDLPMIKAAGLGIAYHAKPKVNEQAEVTIRHADLMGVFCILSGSMNQK
>NZ_CP054254.1|WP_012542920.1|4762580_4763228_+|YtjB-family-periplasmic-protein
MVRAKLKFRLHRAVIVLICLALLVALMQGASWFSQNSQKQRNPQLEELARTLAQQVVLNLVPLMRSETPDEKRINQLLTQLTHNSRVLDAGVYDEQGDLVARSGESVEVRDRLALDGKKAGGYFNQQIVEPVPGKNGPLGYLRLTLDTHTLATEAKQVDNTTNILRLMLLLSLAIGVVLTRTLLQGKRTRWQQSPFLLTANKPVEDEDDEKKGNL
>NZ_CP054254.1|WP_117122478.1|4763227_4764244_+|lipoate--protein-ligase-LplA
MSTLRLLLSDSYDPWFNLAVEECIFRQMPATQRVLFLWRNADTVVIGRAQNPWKECNTRRMEEDHVRLARRSSGGGAVFHDLGNTCFTFMAGKPEYDKTVSTAIVLAALNSLGVTAEASGRNDLVVKTDSGDRKVSGSAYRETIDRGFHHGTLLLNADLSRLANYLNPDQKKLQAKGITSVRGRVANLVELLPGITHQHICEAIQEAFFSHYGERVDAEVISPDNTPDLPNFAETFARQSSWEWNFGQAPAFSHLLDERFRWGGVELHFDVEKGHITRAQAFTDSLNPAPLEALAARLVGCQYRAEVLQQQCEALVGDFPEQEAELKELSAWIAGAVR
>NZ_CP054254.1|WP_004886539.1|4764333_4765053_-|purine-nucleoside-phosphorylase
MATPHINAEMGDFADVVLMPGDPLRAKHIAETFLEDVREVNNVRGMLGFTGTYKGRKISVMGHGMGIPSCSIYTKELITDFGVKKIIRVGSCGAVREDVKLRDVVIGMGACTDSKVNRLRFKDHDFAAIADFGMVRNAVDAAKALGVDARVGNIFSADLFYTPDPSMFDVMEKYGILGVEMEAAGIYGVAAEFGAKALTICTVSDHIRTHEQTTAAERQTTFNDMIKIALESVLLGDQE
>NZ_CP054254.1|WP_016160264.1|4765155_4766379_-|phosphopentomutase
MKRAFIMVLDSFGIGATEDADRFGDVGADTLGHIAEACAKGEADNGRKGPLNLPNLTRLGLVKAHEGSTGKIAAGMDGNAEVIGAYAWAHELSSGKDTPSGHWEIAGVPVLFDWGYFSDHENSFPQELLDKLVKRANLPGYLGNCHSSGTVILDQLGEEHMKTGKPIFYTSADSVFQIACHEETFGLDKLYELCEIAREELTEGGYNIGRVIARPFIGDKAGNFQRTGNRHDLAVEPPAPTVLQKLVDEKNGHVVSVGKIADIYANCGITKKVKATGLDALFDATIKEMKEAGDETIVFTNFVDFDSSWGHRRDVAGYAAGLELFDRRLPELMELVGEDDILILTADHGCDPTWTGTDHTREHIPVLVYGPKVKPGSLGHRETFADIGQTIAKYFGTSDMEYGKAMF
>NZ_CP054254.1|WP_022065752.1|4766431_4767754_-|thymidine-phosphorylase
MFLAQEIIRKKRDGHALSDEEIRFFINGIRDNTISEGQIAALAMTIFFHDMSMPERVSLTMAMRDSGTVLNWKSLNLNGPIVDKHSTGGVGDVTSLMLGPMVAACGGYVPMISGRGLGHTGGTLDKLEAIPGFDIFPDDNRFREIIKDVGVAIIGQTSSLAPADKRFYATRDITATVDSIPLITASILAKKLAEGLDALVMDVKVGSGAFMPTYELSAALAEAIVGVANGAGVRTTALLTDMNQVLASSAGNAVEVREAVQFLTGEYRNPRLFDVTMALCVEMLISGKLAADDAEARAKLQAVLENGKAAEVFGRMVAAQKGPTDFVENYDHYLPTAMLSKAVYADTEGFISAMDTRALGMAVVSMGGGRRQASDTIDYSVGFTDMARLGDHVDGQRPLAVIHAKDENSWQEAAKAVKAAIKLDDKAPEITPTVYRRITE
>NZ_CP054254.1|WP_004146033.1|4767867_4768668_-|deoxyribose-phosphate-aldolase
MTPAEYEMTDLKASSLRALKLMDLTTLNDDDTNEKVIALCHQAKTPVGNTAAVCIYPRFIPIARKTLNEQGTPDIRIATVTNFPHGNDDIDIALAETRAAIAYGADEVDVVFPYRALIAGNEQVGFELVKACKEACAAANVLLKVIIETGELKEEALIRKASEISIKAGADFIKTSTGKVPVNATPESARIMMEVIRDMGVEKTVGFKPAGGVRSAEDAQQFLAIADELFGADWADSRHYRFGASSLLASLLKALGHGDGKSASSY
>NZ_CP054254.1|WP_008807526.1|4769063_4769849_-|metal-dependent-hydrolase
MSHRFIDTHCHFDFPPFAEDETASLARAAQVGVGQIIVPAISAARFNRVLALAAQHEALYAALGMHPIVIEQHADEGLAQLERCLSLRPPKLVAVGEIGLDLYRDDPQFDRQQALLEEQLRLAKRYDLPVILHSRRTHDKLAMLLKKHALPRTGVVHGFAGSLQQAERFVQLGYKIGVGGTITYPRASKTREVMARLPLSALLLETDAPDMPLNGFQGQPNRPEQVARVFDALCELRAEPAPTIEAAVMANTKSLFSALAG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

654020 : 693584

Salmonella_phage(81.4%)

lysis,tRNA,portal,capsid,terminase,head,tail,plate,integrase

attL 653935:653981|attR 687395:687441

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
653935:653981	attL	NA	NA	NA	NA
WP_032439000.1\|654020_655106_-\|integrase	tyrosine-type recombinase/integrase	F1BUS9	Erwinia_phage	5.3e-122	61.0
WP_109232864.1\|655109_655730_-	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	3.3e-36	39.0
WP_004144798.1\|655830_656067_+	hypothetical protein	NA	NA	NA	NA
WP_109232863.1\|656101_656611_+	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	3.5e-76	84.0
WP_109232862.1\|656618_656819_+	DUF2724 domain-containing protein	A0A1S6L005	Salmonella_phage	6.5e-26	83.1
WP_109232861.1\|656782_657124_+	DUF5347 domain-containing protein	A0A1S6L019	Salmonella_phage	2.1e-48	85.7
WP_019704181.1\|657192_657426_+	DUF2732 family protein	A0A1S6L021	Salmonella_phage	7.8e-31	90.9
WP_101516368.1\|657425_657653_+	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	1.5e-31	85.3
WP_109232860.1\|657649_658537_+	DNA adenine methylase	E5G6L8	Salmonella_phage	3.1e-120	75.6
WP_109232859.1\|658517_660923_+	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	89.5
WP_109232868.1\|661109_661298_+	hypothetical protein	A0A1S6L006	Salmonella_phage	5.1e-25	96.8
WP_109232867.1\|661310_661544_+	DinI family protein	A0A1S6L014	Salmonella_phage	3.0e-30	84.4
WP_016529211.1\|661829_662048_+	hypothetical protein	NA	NA	NA	NA
WP_109232858.1\|662047_662890_+	hypothetical protein	A0A0M4R2T6	Salmonella_phage	2.9e-59	48.1
WP_109232857.1\|663104_664655_+	hypothetical protein	NA	NA	NA	NA
WP_109232856.1\|664751_665774_-\|portal	phage portal protein	E5G6M3	Salmonella_phage	8.4e-178	90.6
WP_109232855.1\|665773_667537_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	93.2
WP_109232854.1\|667677_668511_+\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	1.8e-101	72.2
WP_038421820.1\|668527_669580_+\|capsid	phage major capsid protein, P2 family	A0A1S6KZZ3	Salmonella_phage	2.7e-171	88.8
WP_109232853.1\|669583_670234_+\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	2.8e-102	86.1
WP_064172752.1\|670330_670795_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	6.0e-75	86.4
WP_002896155.1\|670794_670998_+\|tail	tail protein X	A0A1S6KZY4	Salmonella_phage	1.3e-29	88.1
WP_109232852.1\|671001_671217_+	hypothetical protein	E5G6N0	Salmonella_phage	3.9e-29	87.3
WP_019704195.1\|671197_671707_+	lysozyme	E5G6N1	Salmonella_phage	3.3e-82	84.6
WP_109232851.1\|671711_672095_+	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	8.1e-17	43.7
WP_020323995.1\|672091_672520_+\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	7.3e-51	79.4
WP_072145348.1\|672494_672653_+	hypothetical protein	A0A1S6KZX6	Salmonella_phage	2.0e-14	73.1
WP_002896172.1\|672615_673047_+\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	9.9e-64	82.5
WP_173817997.1\|673039_673486_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	3.3e-54	73.0
WP_109232849.1\|673554_674127_+\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	3.3e-75	70.7
WP_004174325.1\|674123_674486_+	GPW/gp25 family protein	A0A1S6KZZ4	Salmonella_phage	9.9e-49	84.7
WP_064189017.1\|674472_675381_+\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	9.0e-107	67.5
WP_109232848.1\|675373_675976_+\|tail	phage tail protein I	E5G6N9	Salmonella_phage	5.6e-57	59.9
WP_129497902.1\|675911_678242_+	hypothetical protein	B5TAB2	Burkholderia_phage	1.2e-107	40.5
WP_109232847.1\|678247_678976_+	hypothetical protein	NA	NA	NA	NA
WP_109232846.1\|678987_680070_+\|tail	phage tail protein	A0A2I8TVA9	Erwinia_phage	1.8e-29	33.8
WP_109232845.1\|680208_681381_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	1.9e-210	93.3
WP_002896201.1\|681390_681906_+\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	1.3e-81	85.4
WP_004144716.1\|681958_682258_+\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	1.6e-33	80.0
WP_002896220.1\|682272_682392_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.2e-13	87.2
WP_162556882.1\|682618_685012_+\|tail	phage tail tape measure protein	A0A2H4JGB2	uncultured_Caudovirales_phage	6.9e-106	39.2
WP_004185683.1\|685008_685494_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	4.1e-58	77.6
WP_109232843.1\|685490_686588_+	phage late control D family protein	E5G6Q3	Salmonella_phage	7.9e-174	84.4
WP_004174338.1\|686658_686877_+	ogr/Delta-like zinc finger family protein	Q53ZE7	Salmonella_virus	1.9e-26	72.2
WP_004144517.1\|686889_687267_-	hypothetical protein	NA	NA	NA	NA
WP_173817999.1\|687594_688101_+	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
687395:687441	attR	NA	NA	NA	NA
WP_008806539.1\|688200_690042_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	8.3e-35	33.7
WP_008806538.1\|690260_692006_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.2e-75	38.2
WP_001144069.1\|692117_692333_-	30S ribosomal protein S21	NA	NA	NA	NA
WP_008806537.1\|692570_693584_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	3.7e-109	59.5

DBSCAN-SWA_2

1689495 : 1696421

Bacillus_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_173818090.1\|1689495_1690359_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	2.6e-07	22.9
WP_012967575.1\|1690369_1691143_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.0e-26	37.2
WP_173818093.1\|1691382_1692279_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	4.7e-15	29.8
WP_008804076.1\|1692521_1693883_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.0e-207	94.8
WP_004201558.1\|1694199_1694922_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
WP_008804077.1\|1694918_1696421_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	8.6e-30	28.3

DBSCAN-SWA_3

2785905 : 2796784

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_173818184.1\|2785905_2789013_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.5
WP_012968277.1\|2789067_2790333_+	MFS transporter	NA	NA	NA	NA
WP_080923376.1\|2790361_2791450_-	AAA family ATPase	A0A077SLJ9	Escherichia_phage	3.1e-207	98.1
WP_012968279.1\|2791536_2791797_-	hypothetical protein	A0A077SK33	Escherichia_phage	4.6e-40	96.5
WP_080923375.1\|2792091_2792952_+	class A beta-lactamase LEN-30	A0A077SL40	Escherichia_phage	6.7e-144	90.6
WP_008804982.1\|2792969_2793731_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	2.1e-133	99.2
WP_173818185.1\|2793991_2794894_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	1.1e-157	98.7
WP_023340102.1\|2794905_2796171_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	1.3e-228	97.4
WP_012541792.1\|2796163_2796784_+	aldolase	A0A077SK32	Escherichia_phage	5.7e-113	98.1

DBSCAN-SWA_4

2889917 : 2934674

Cronobacter_phage(30.23%)

holin,terminase,head,tail,integrase

attL 2887493:2887507|attR 2923102:2923116

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2887493:2887507	attL	NA	NA	NA	NA
WP_099718767.1\|2889917_2891018_+\|integrase	site-specific integrase	A0A1W6JP34	Morganella_phage	7.5e-116	56.9
WP_099718765.1\|2891334_2892018_+	hypothetical protein	NA	NA	NA	NA
WP_117024239.1\|2892365_2893088_-	hypothetical protein	NA	NA	NA	NA
WP_057216394.1\|2893100_2895329_-	hypothetical protein	B5TAB2	Burkholderia_phage	5.1e-111	36.7
WP_099718760.1\|2895415_2897893_-\|tail	phage tail protein	F1C5A7	Cronobacter_phage	4.7e-198	45.5
WP_099718758.1\|2897879_2898275_-	C40 family peptidase	F1C5F2	Cronobacter_phage	3.0e-35	54.0
WP_004199076.1\|2898271_2898742_-	hypothetical protein	R9TPR6	Aeromonas_phage	2.5e-28	41.0
WP_032438661.1\|2898741_2899218_-	hypothetical protein	A0A2P1MXB5	Escherichia_phage	2.5e-36	49.0
WP_065802151.1\|2899260_2899506_-	hypothetical protein	NA	NA	NA	NA
WP_117024238.1\|2899505_2901977_-\|tail	phage tail length tape measure family protein	A0A173GC04	Salmonella_phage	5.1e-205	60.1
WP_048291458.1\|2902052_2902556_-	hypothetical protein	NA	NA	NA	NA
WP_099719279.1\|2902683_2903430_-	hypothetical protein	A0A0P0ZDC0	Stx2-converting_phage	4.4e-67	58.0
WP_038421578.1\|2903499_2904204_-	BRO family, N-terminal domain protein	H6WRU8	Salmonella_phage	6.2e-39	39.8
WP_004223324.1\|2904193_2904367_-	Arc family DNA-binding protein	I6R9A8	Salmonella_phage	5.1e-19	85.7
WP_099719276.1\|2904479_2904842_+	Arc family DNA-binding protein	H6WRU6	Salmonella_phage	3.3e-12	65.6
WP_099719274.1\|2905024_2905723_-	hypothetical protein	A0A1W6JNX2	Morganella_phage	7.0e-51	49.3
WP_099719272.1\|2905780_2906524_-	Ig domain-containing protein	F1C5E5	Cronobacter_phage	9.1e-73	84.4
WP_099719269.1\|2906586_2906970_-	hypothetical protein	F1C5E4	Cronobacter_phage	7.5e-39	62.2
WP_117024235.1\|2906966_2907392_-	HK97 gp10 family phage protein	F1C5E3	Cronobacter_phage	4.0e-25	66.7
WP_099719052.1\|2907394_2907742_-	hypothetical protein	G0ZNE2	Cronobacter_phage	5.9e-35	63.5
WP_061357254.1\|2907741_2907915_-	hypothetical protein	I6R0P9	Salmonella_phage	5.4e-13	54.4
WP_099719054.1\|2907914_2908295_-	hypothetical protein	F1C5E2	Cronobacter_phage	1.2e-28	54.5
WP_173818201.1\|2908297_2908555_-	hypothetical protein	NA	NA	NA	NA
WP_004178847.1\|2908564_2909662_-	hypothetical protein	F1C5E1	Cronobacter_phage	4.2e-151	73.6
WP_004178846.1\|2909673_2910105_-	hypothetical protein	F1C5E0	Cronobacter_phage	1.4e-41	60.1
WP_099719059.1\|2910108_2911494_-	DUF2213 domain-containing protein	F1C5D9	Cronobacter_phage	1.5e-166	64.5
WP_048980364.1\|2911841_2912846_-\|head	phage head morphogenesis protein	F1C5D8	Cronobacter_phage	6.0e-112	67.0
WP_099719063.1\|2912772_2914242_-	DUF1073 domain-containing protein	F1C5D7	Cronobacter_phage	2.0e-148	56.3
WP_099719065.1\|2914254_2915553_-\|terminase	PBSX family phage terminase large subunit	H6WRS9	Salmonella_phage	2.3e-241	94.1
WP_099719067.1\|2915536_2916004_-	DUF2280 domain-containing protein	I6S1P9	Salmonella_phage	1.5e-57	74.5
WP_099719070.1\|2916035_2916671_-	hypothetical protein	I6S676	Salmonella_phage	5.5e-103	82.1
WP_172436860.1\|2917563_2917953_-	DUF2570 domain-containing protein	S5FKR3	Shigella_phage	2.0e-23	45.1
WP_099719076.1\|2917949_2918480_-	lysozyme	G9L6J6	Escherichia_phage	9.3e-80	79.1
WP_004151282.1\|2918482_2918731_-\|holin	class II holin family protein	NA	NA	NA	NA
WP_099719078.1\|2918890_2919307_-	hypothetical protein	NA	NA	NA	NA
WP_099719080.1\|2919502_2920192_-	antiterminator	I6PDF8	Cronobacter_phage	4.2e-56	54.9
WP_173818203.1\|2920188_2920329_-	YlcG family protein	NA	NA	NA	NA
WP_049152056.1\|2920325_2920709_-	hypothetical protein	A0A2R2Z307	Escherichia_phage	4.6e-20	44.6
WP_049152055.1\|2920705_2921299_-	recombination protein NinG	A0A0M4RU10	Salmonella_phage	6.2e-40	62.4
WP_049152053.1\|2921923_2922325_-	hypothetical protein	NA	NA	NA	NA
WP_049152050.1\|2922303_2922720_-	HEPN domain-containing protein	NA	NA	NA	NA
WP_049152048.1\|2922856_2923075_-	hypothetical protein	NA	NA	NA	NA
WP_142351863.1\|2923067_2923373_-	hypothetical protein	NA	NA	NA	NA
2923102:2923116	attR	NA	NA	NA	NA
WP_049152045.1\|2923406_2923781_-	hypothetical protein	A0A076G611	Escherichia_phage	1.8e-16	40.9
WP_099719087.1\|2923777_2924293_-	hypothetical protein	A0A0P0ZBM8	Stx2-converting_phage	2.9e-70	76.4
WP_053091181.1\|2924292_2924646_-	hypothetical protein	A0A220NQV2	Salmonella_phage	1.3e-08	68.2
WP_049152042.1\|2924638_2925715_-	DGQHR domain-containing protein	T1SBJ4	Salmonella_phage	1.4e-146	73.2
WP_049152041.1\|2925711_2926500_-	hypothetical protein	C7BGF1	Burkholderia_phage	2.4e-63	52.5
WP_029499290.1\|2926712_2927108_-	hypothetical protein	NA	NA	NA	NA
WP_049152038.1\|2927134_2928229_-	hypothetical protein	K7PLZ7	Enterobacterial_phage	2.2e-30	40.1
WP_023312759.1\|2928225_2928480_-	hypothetical protein	NA	NA	NA	NA
WP_004196543.1\|2928675_2928996_-	hypothetical protein	A0A0M4RU01	Salmonella_phage	5.0e-36	68.9
WP_040217333.1\|2929035_2929269_-	helix-turn-helix domain-containing protein	A0A0N7C1T6	Escherichia_phage	6.2e-12	47.9
WP_040217336.1\|2929396_2930086_+	helix-turn-helix transcriptional regulator	G8C7U1	Escherichia_phage	6.7e-62	52.7
WP_099719095.1\|2930738_2931032_+	host cell division inhibitory peptide Kil	NA	NA	NA	NA
WP_099719099.1\|2931557_2931782_+	hypothetical protein	A0A286S2B3	Klebsiella_phage	1.9e-18	59.5
WP_099719101.1\|2931778_2932123_+	hypothetical protein	NA	NA	NA	NA
WP_099719104.1\|2932115_2932745_+	hypothetical protein	NA	NA	NA	NA
WP_072664171.1\|2932858_2933119_+	pyocin activator PrtN family protein	A0A1L5C290	Pseudoalteromonas_phage	1.5e-11	43.7
WP_012541886.1\|2933742_2933901_-	hypothetical protein	NA	NA	NA	NA
WP_022065676.1\|2934158_2934674_+	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	1.7e-22	53.5

DBSCAN-SWA_5

3043543 : 3084611

Escherichia_phage(50.0%)

tRNA,transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002902422.1\|3043543_3044479_+\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	3.5e-138	93.0
WP_032735419.1\|3044524_3045898_-	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	8.6e-53	32.3
WP_032735417.1\|3046423_3047407_-	zinc transporter ZntB	NA	NA	NA	NA
WP_012541956.1\|3047685_3048429_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	4.1e-17	30.9
WP_046878927.1\|3048391_3049510_+	oxidoreductase	NA	NA	NA	NA
WP_008805155.1\|3049746_3049941_+	hypothetical protein	NA	NA	NA	NA
WP_032754194.1\|3050056_3050806_-	hypothetical protein	NA	NA	NA	NA
WP_008805157.1\|3051041_3052418_-	amino acid permease	NA	NA	NA	NA
WP_008805158.1\|3052752_3053232_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
WP_002902402.1\|3053482_3054097_+	YitT family protein	NA	NA	NA	NA
WP_032754191.1\|3054135_3055335_+	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
WP_004892563.1\|3055379_3056048_-	ABC transporter permease	NA	NA	NA	NA
WP_032733457.1\|3056040_3057054_-	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	7.6e-30	38.5
WP_012968382.1\|3057062_3057869_-	methionine-binding protein	NA	NA	NA	NA
WP_080923340.1\|3058089_3059265_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
WP_032735411.1\|3059311_3060346_-	NADP-dependent oxidoreductase	NA	NA	NA	NA
WP_173818210.1\|3060434_3060983_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_032735410.1\|3061039_3061951_-	NmrA/HSCARG family protein	NA	NA	NA	NA
WP_173818212.1\|3061950_3062814_-	MBL fold metallo-hydrolase	NA	NA	NA	NA
WP_162708829.1\|3063510_3063825_+	hypothetical protein	NA	NA	NA	NA
WP_032735406.1\|3063844_3064750_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_032730181.1\|3064888_3065818_+	aromatic alcohol reductase	NA	NA	NA	NA
WP_012968391.1\|3065843_3066050_+	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_004151595.1\|3066099_3066978_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_022066352.1\|3067136_3067892_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_173818214.1\|3067896_3068490_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_008805173.1\|3068563_3069277_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_131010802.1\|3069343_3069838_-	hypothetical protein	NA	NA	NA	NA
WP_173818216.1\|3069962_3070505_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA
WP_072124844.1\|3070482_3071568_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_131010803.1\|3071531_3073286_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_049155396.1\|3073362_3073833_-	hypothetical protein	NA	NA	NA	NA
WP_049155394.1\|3073829_3074885_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_015874732.1\|3074915_3076514_-	type VI secretion system protein TssA	NA	NA	NA	NA
WP_173818218.1\|3076513_3080017_-	type VI secretion protein VasK	NA	NA	NA	NA
WP_020324630.1\|3079965_3081174_-	hypothetical protein	NA	NA	NA	NA
WP_072072278.1\|3081919_3082348_-	sugar ABC transporter permease	NA	NA	NA	NA
WP_072072277.1\|3082440_3083511_-	TIGR02594 family protein	A0A222YWL8	Escherichia_phage	5.6e-07	35.0
WP_077268497.1\|3083497_3084040_-\|transposase	IS3 family transposase	A0A0N9SIX5	Staphylococcus_phage	1.3e-07	30.4
WP_077270055.1\|3084059_3084203_-\|transposase	IS3 family transposase	NA	NA	NA	NA
WP_015874727.1\|3084343_3084535_-\|transposase	transposase	NA	NA	NA	NA
WP_015874726.1\|3084506_3084611_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_6

3318474 : 3411872

Klebsiella_phage(44.44%)

tRNA,holin,portal,capsid,terminase,head,tail,integrase

attL 3345401:3345417|attR 3409926:3409942

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_173818251.1\|3318474_3318975_+\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
WP_008807681.1\|3319092_3319539_+	DUF441 domain-containing protein	NA	NA	NA	NA
WP_163593195.1\|3319522_3320317_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_163593198.1\|3320423_3321599_+	CynX/NimT family MFS transporter	NA	NA	NA	NA
WP_012968515.1\|3321630_3322323_-	CTP synthase	NA	NA	NA	NA
WP_032739592.1\|3322468_3322978_+	DUF523 domain-containing protein	NA	NA	NA	NA
WP_163593197.1\|3322982_3323321_+	DUF488 family protein	NA	NA	NA	NA
WP_032739591.1\|3323310_3323550_-	DUF333 domain-containing protein	NA	NA	NA	NA
WP_023297404.1\|3323851_3324865_+	sensor domain-containing diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.4e-12	29.0
WP_004150782.1\|3324922_3325024_+	YoaK family small membrane protein	NA	NA	NA	NA
WP_004892898.1\|3325023_3325098_+	protein YoaJ	NA	NA	NA	NA
WP_012542130.1\|3325217_3325343_+	hypothetical protein	NA	NA	NA	NA
WP_004203731.1\|3325402_3325666_-	DUF2534 family protein	NA	NA	NA	NA
WP_004203730.1\|3325796_3326435_-	leucine efflux protein LeuE	NA	NA	NA	NA
WP_008807690.1\|3326524_3327439_-	kdo(2)-lipid IV(A) palmitoleoyltransferase	A0A1W6JP29	Morganella_phage	3.2e-72	50.0
WP_173818253.1\|3328096_3329140_-	type II asparaginase	NA	NA	NA	NA
WP_032754049.1\|3329448_3330657_+	HD domain-containing protein	NA	NA	NA	NA
WP_012542132.1\|3330730_3332515_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	5.8e-17	36.1
WP_008807694.1\|3332521_3333412_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_012542133.1\|3333532_3335035_+	UbiD family decarboxylase	NA	NA	NA	NA
WP_012542134.1\|3335110_3335521_-	Spy/CpxP family protein refolding chaperone	NA	NA	NA	NA
WP_016160694.1\|3335650_3336337_-	EAL domain-containing protein	NA	NA	NA	NA
WP_032691162.1\|3336804_3336993_+	hypothetical protein	NA	NA	NA	NA
WP_008807698.1\|3336971_3337604_-	DNA-binding protein	NA	NA	NA	NA
WP_032754041.1\|3338176_3338374_+	hypothetical protein	NA	NA	NA	NA
WP_032754039.1\|3338432_3339227_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_100781348.1\|3339304_3341356_+	FUSC family protein	NA	NA	NA	NA
WP_012968537.1\|3341348_3341561_+	DUF1656 domain-containing protein	NA	NA	NA	NA
WP_022066226.1\|3341557_3342478_+	HlyD family secretion protein	NA	NA	NA	NA
WP_012542144.1\|3342471_3343482_-	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA
WP_012542145.1\|3343478_3344885_-	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA
WP_043875502.1\|3344940_3345828_-	manganese catalase family protein	NA	NA	NA	NA
3345401:3345417	attL	NA	NA	NA	NA
WP_008807706.1\|3345844_3346351_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_008807707.1\|3346377_3346872_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_004150795.1\|3346961_3347147_-	general stress protein	NA	NA	NA	NA
WP_064160807.1\|3347757_3348951_+	glutathione-dependent formaldehyde dehydrogenase	NA	NA	NA	NA
WP_072023763.1\|3349004_3349196_+	DUF1272 domain-containing protein	NA	NA	NA	NA
WP_012968540.1\|3349240_3349786_-	cysteine hydrolase	NA	NA	NA	NA
WP_008807711.1\|3350106_3350580_+	OsmC family protein	NA	NA	NA	NA
WP_008807712.1\|3350717_3351041_+	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
WP_064160808.1\|3351033_3351426_+	hypothetical protein	NA	NA	NA	NA
WP_012968544.1\|3351422_3352136_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_032730035.1\|3352473_3352947_-	hypothetical protein	NA	NA	NA	NA
WP_022066233.1\|3352943_3353282_-	hypothetical protein	NA	NA	NA	NA
WP_004892953.1\|3353680_3353833_-	isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-18	92.0
WP_123797883.1\|3354165_3354489_-	hypothetical protein	NA	NA	NA	NA
WP_173818254.1\|3354494_3355187_-	EAL domain-containing protein	NA	NA	NA	NA
WP_085841091.1\|3355542_3356601_-	sensor domain-containing diguanylate cyclase	G3MA91	Bacillus_virus	2.5e-15	31.4
WP_021462614.1\|3357023_3358448_-\|tail	tail fiber domain-containing protein	A0A0P0IDN1	Klebsiella_phage	4.1e-98	49.2
WP_099441265.1\|3358509_3371100_-	carbohydrate binding domain-containing protein	Q6UAW1	Klebsiella_phage	0.0e+00	49.7
WP_032447254.1\|3371162_3371756_-\|tail	tail assembly protein	Q6UAW2	Klebsiella_phage	3.7e-85	80.7
WP_085898365.1\|3371776_3372601_-	hypothetical protein	A0A0S2SY43	Pseudomonas_phage	1.8e-05	45.9
WP_085898366.1\|3372647_3373358_-	C40 family peptidase	Q6UAW4	Klebsiella_phage	5.2e-134	89.8
WP_023289191.1\|3373359_3374115_-\|tail	phage minor tail protein L	Q6UAW5	Klebsiella_phage	2.7e-125	80.9
WP_017880254.1\|3374111_3374450_-\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	6.4e-58	89.3
WP_085898367.1\|3374449_3377785_-\|tail	phage tail tape measure protein	Q6UAW7	Klebsiella_phage	0.0e+00	88.4
WP_014228914.1\|3378017_3378383_-\|tail	phage tail protein	Q6UAW8	Klebsiella_phage	1.6e-51	89.3
WP_173818256.1\|3378440_3378902_-\|tail	phage tail protein	Q6UAX0	Klebsiella_phage	2.3e-66	83.0
WP_172601091.1\|3378933_3379326_-	HK97 gp10 family phage protein	Q6UAX1	Klebsiella_phage	2.7e-60	93.1
WP_017880258.1\|3379331_3379721_-	hypothetical protein	Q6UAX2	Klebsiella_phage	9.6e-58	86.0
WP_064291707.1\|3379701_3380040_-\|head,tail	head-tail adaptor protein	Q6UAX3	Klebsiella_phage	2.1e-53	90.2
WP_023339902.1\|3380036_3380354_-\|head,tail	phage gp6-like head-tail connector protein	Q6UAX4	Klebsiella_phage	5.8e-45	88.8
WP_048964994.1\|3380334_3380622_-	hypothetical protein	Q6UAX5	Klebsiella_phage	2.5e-18	79.6
WP_046622319.1\|3380679_3381966_-\|capsid	phage major capsid protein	Q6UAX6	Klebsiella_phage	6.3e-207	86.2
WP_033128541.1\|3382043_3382964_-	S49 family peptidase	Q6UAX7	Klebsiella_phage	2.1e-148	87.9
WP_061154057.1\|3383000_3384260_-\|portal	phage portal protein	Q6UAX8	Klebsiella_phage	3.1e-222	89.5
WP_020318187.1\|3384259_3384439_-	hypothetical protein	Q6UAX9	Klebsiella_phage	6.8e-11	57.9
WP_014228904.1\|3384432_3386154_-\|terminase	terminase large subunit	Q7Y413	Yersinia_phage	7.2e-190	57.2
WP_012542168.1\|3386153_3386588_-\|terminase	phage terminase small subunit P27 family	A0A1J0GV10	Halomonas_phage	9.4e-30	61.9
WP_023279521.1\|3386835_3387267_-	hypothetical protein	Q6UAS0	Klebsiella_phage	2.4e-41	61.3
WP_016160653.1\|3387263_3387581_-	hypothetical protein	NA	NA	NA	NA
WP_014228901.1\|3387532_3387895_-	HNH endonuclease	Q6UAS2	Klebsiella_phage	1.2e-57	83.3
WP_022065713.1\|3389018_3389369_-	hypothetical protein	R9TPM9	Aeromonas_phage	2.5e-09	36.8
WP_064151301.1\|3389365_3389863_-	lysozyme	A0A1V0E5Q7	Salmonella_phage	1.8e-80	87.7
WP_017880269.1\|3389862_3390078_-\|holin	class II holin family protein	A5LH82	Enterobacteria_phage	7.9e-30	87.3
WP_022064937.1\|3390970_3392002_+	hypothetical protein	A0A0P0ZDC5	Stx2-converting_phage	7.2e-177	93.3
WP_064277453.1\|3392072_3392534_+	hypothetical protein	A0A0P0ZCX2	Stx2-converting_phage	1.9e-60	83.0
WP_064277416.1\|3392555_3392897_-	antitermination protein	A0A0P0ZCW0	Stx2-converting_phage	2.4e-57	89.4
WP_022065891.1\|3392909_3393941_-	DUF968 domain-containing protein	S5MW46	Escherichia_phage	1.4e-95	49.0
WP_049114843.1\|3394140_3394533_-	DNA-binding protein	K7PHB4	Enterobacterial_phage	4.7e-12	36.6
WP_050597314.1\|3394573_3394813_-	hypothetical protein	H6WRY6	Salmonella_phage	1.9e-16	58.6
WP_014228891.1\|3394875_3395109_-	DinI-like family protein	K7PM44	Enterobacteria_phage	2.4e-24	69.7
WP_048333319.1\|3395763_3397125_+	hypothetical protein	NA	NA	NA	NA
WP_040975727.1\|3397468_3399232_-	EAL domain-containing protein	NA	NA	NA	NA
WP_099441261.1\|3399544_3399985_-	PerC family transcriptional regulator	NA	NA	NA	NA
WP_021462583.1\|3399998_3400463_-	Replication protein 14	A0A0U2JGJ0	Escherichia_phage	1.7e-61	69.5
WP_021462582.1\|3400455_3401439_-	hypothetical protein	A0A0U2RT81	Escherichia_phage	3.3e-46	56.4
WP_014907826.1\|3401490_3402045_-	hypothetical protein	NA	NA	NA	NA
WP_012542199.1\|3402047_3402263_-	helix-turn-helix domain-containing protein	A0A0M4QX15	Salmonella_phage	2.0e-17	57.5
WP_012542200.1\|3402364_3402754_+	helix-turn-helix domain-containing protein	A0A0M4R5D1	Salmonella_phage	6.7e-35	60.2
WP_099217174.1\|3403596_3403791_+	DUF1482 family protein	NA	NA	NA	NA
WP_072123312.1\|3403950_3404289_+	hypothetical protein	NA	NA	NA	NA
WP_099441260.1\|3404430_3406569_+	exonuclease	S4TNL0	Salmonella_phage	5.6e-99	42.5
WP_012542206.1\|3406621_3406867_+	excisionase	NA	NA	NA	NA
WP_032418030.1\|3406847_3407975_+\|integrase	phage integrase Arm DNA-binding domain-containing protein	O21925	Phage_21	4.4e-119	58.4
WP_173818258.1\|3408092_3409343_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	1.1e-19	92.6
WP_042947647.1\|3409583_3410234_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
3409926:3409942	attR	NA	NA	NA	NA
WP_008806030.1\|3410250_3410709_+	NUDIX hydrolase	NA	NA	NA	NA
WP_012542211.1\|3410765_3411872_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA

DBSCAN-SWA_7

3669728 : 3679176

Brazilian_cedratvirus(16.67%)

tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032739423.1\|3669728_3671450_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	4.5e-14	34.0
WP_008805841.1\|3671489_3672194_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|3672545_3672764_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_012542332.1\|3672882_3675162_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	3.7e-165	42.0
WP_002896520.1\|3675192_3675510_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_002896516.1\|3675835_3676057_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_008805839.1\|3676123_3678064_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	2.9e-38	41.0
WP_008805838.1\|3678060_3679176_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP054254

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection