CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP054266	Klebsiella pneumoniae strain 39427 plasmid pKPN39427.2, complete sequence	0 crisprs	NA	0	1
NZ_CP054267	Klebsiella pneumoniae strain 39427 plasmid pKPN39427.3, complete sequence	0 crisprs	NA	0	3
NZ_CP054268	Klebsiella pneumoniae strain 39427 chromosome, complete genome	3 crisprs	csa3,cas3,DEDDh,RT,DinG,WYL	1	12
NZ_CP054265	Klebsiella pneumoniae strain 39427 plasmid pKPN39427.1, complete sequence	0 crisprs	cas3,csa3	0	1

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1127 : 9931

Enterobacteria_phage(28.57%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152348.1\|1127_2102_-	ParB/RepB/Spo0J family partition protein	Q1MVJ4	Enterobacteria_phage	1.4e-105	62.3
WP_004152349.1\|2098_3304_-	AAA family ATPase	Q1MVJ3	Enterobacteria_phage	7.3e-205	89.0
WP_004152350.1\|3625_4522_-	replication initiation protein	Q71TL8	Escherichia_phage	3.3e-69	53.8
WP_004152351.1\|4922_6194_-	Y-family DNA polymerase	F1C5A5	Cronobacter_phage	3.6e-154	63.7
WP_004152352.1\|6193_6625_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.0e-28	52.5
WP_004152353.1\|6856_7828_+	mediator of plasmid stability	A0A222YXF2	Escherichia_phage	1.1e-73	46.8
WP_004152354.1\|7830_8502_+	plasmid partitioning/stability family protein	NA	NA	NA	NA
WP_001568040.1\|8562_8793_+	hypothetical protein	NA	NA	NA	NA
WP_004152355.1\|9229_9931_+	DNA methylase	A0A2I7RE86	Vibrio_phage	7.1e-27	36.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP054267

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 11585

Streptococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004221702.1\|3914_4100_-	hypothetical protein	NA	NA	NA	NA
WP_004221700.1\|4057_4270_-	hypothetical protein	NA	NA	NA	NA
WP_000557557.1\|4332_4608_-	hypothetical protein	NA	NA	NA	NA
WP_000510385.1\|4625_4880_-	hypothetical protein	NA	NA	NA	NA
WP_000196235.1\|4989_5811_-	SprT-like domain-containing protein	NA	NA	NA	NA
WP_000136657.1\|5807_5987_-	hypothetical protein	NA	NA	NA	NA
WP_000351937.1\|6259_6910_+	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_001293458.1\|6947_7403_-	H-NS histone family protein	NA	NA	NA	NA
WP_004199098.1\|7414_9742_-	type IA DNA topoisomerase	A0A1X9I6W8	Streptococcus_phage	8.6e-37	28.1
WP_000517490.1\|9745_11008_-	ATP-binding protein	A0A1V0SKF8	Klosneuvirus	1.3e-07	31.4
WP_001215543.1\|11090_11585_-	thermonuclease family protein	A0A0R6PHV6	Moraxella_phage	8.0e-17	37.3

DBSCAN-SWA_2

30216 : 30732

Tupanvirus(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001025390.1\|30216_30732_-	DnaJ domain-containing protein	A0A2K9L588	Tupanvirus	3.3e-05	39.8

DBSCAN-SWA_3

35332 : 43324

Enterobacteria_phage(33.33%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000516402.1\|35332_35995_-	peptidyl-arginine deiminase	E5FFJ3	Burkholderia_phage	2.6e-07	25.2
WP_001549893.1\|36375_37038_+	recombinase family protein	M9Q1K0	Clostridium_phage	9.7e-10	29.1
WP_001549892.1\|37124_37364_+	hypothetical protein	I6PD82	Cronobacter_phage	4.4e-21	55.1
WP_001067855.1\|37756_38461_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_063840280.1\|38811_39366_-	AAC(6')-Ib family aminoglycoside 6'-N-acetyltransferase	NA	NA	NA	NA
WP_001217881.1\|39599_40157_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	2.0e-93	98.4
WP_001143775.1\|40318_43324_+\|transposase	Tn3-like element Tn3 family transposase	Q1MVP5	Enterobacteria_phage	0.0e+00	99.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP054268

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP054268_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP054268_1

4079498-4079593

Orphan

Consensus_repeat	Method
TGGCACTTTGTTGGCATTCTGTTGGCACAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP054268_1

>merge|NZ_CP054268|1|4079498-4079593|CRISPRCasFinder
TGGCACTTTGTTGGCATTCTGTTGGCACAACCTCGCCGGTACGCAGCGTGGTTACTGGGTTTGCGTTGGCACTTTGTTGGCATTCTGTTGGCACAA

>NZ_CP054268|1|1|4079498-4079593|CRISPRCasFinder
TGGCACTTTGTTGGCATTCTGTTGGCACAA	CCTCGCCGGTACGCAGCGTGGTTACTGGGTTTGCGT
TGGCACTTTGTTGGCATTCTGTTGGCACAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054268.1\|WP_004151306.1\|4083614_4084295_+\|YqaJ-viral-recombinase-family-protein	unknown	unknown	gnl\|CDD\|378216
NZ_CP054268.1\|WP_004151305.1\|4082772_4083618_+\|phage-recombination-protein-Bet	unknown	unknown	gnl\|CDD\|273871
NZ_CP054268.1\|WP_004151292.1\|4075746_4075923_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054268.1\|WP_004151295.1\|4077374_4077668_-\|protein-ren	unknown	unknown	gnl\|CDD\|238042
NZ_CP054268.1\|WP_004151302.1\|4082086_4082197_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054268.1\|WP_004151291.1\|4075102_4075750_-\|DUF551-domain-containing-protein	unknown	unknown	gnl\|CDD\|367946
NZ_CP054268.1\|WP_004151304.1\|4082472_4082757_+\|host-nuclease-inhibitor-GamL	unknown	unknown	unknown
NZ_CP054268.1\|WP_004151294.1\|4076871_4077378_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054268.1\|WP_004151293.1\|4075922_4076765_-\|ead/Ea22-like-family-protein	unknown	unknown	gnl\|CDD\|379401
NZ_CP054268.1\|WP_004151288.1\|4074146_4074602_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182057
NZ_CP054268.1\|WP_004151287.1\|4073976_4074147_-\|NinE-family-protein	unknown	unknown	gnl\|CDD\|182029
NZ_CP054268.1\|WP_001548453.1\|4080211_4080433_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|336083
NZ_CP054268.1\|WP_004151285.1\|4073214_4073352_-\|YlcG-family-protein	unknown	unknown	unknown
NZ_CP054268.1\|WP_004151301.1\|4081874_4082090_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054268.1\|WP_004151286.1\|4073348_4073984_-\|recombination-protein-NinG	unknown	unknown	gnl\|CDD\|368603
NZ_CP054268.1\|WP_004151303.1\|4082189_4082384_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054268.1\|WP_004151300.1\|4080834_4081524_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225484
NZ_CP054268.1\|WP_004230547.1\|4077667_4079083_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|274672
NZ_CP054268.1\|WP_004151298.1\|4079979_4080126_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054268.1\|WP_004151299.1\|4080473_4080707_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|374243

Protein	Function_ID	Function_description	E-value
NZ_CP054268.1\|WP_004151306.1\|4083614_4084295_+\|YqaJ-viral-recombinase-family-protein	gnl\|CDD\|378216	pfam09588, YqaJ, YqaJ-like viral recombinase domain. This protein family is found in many different bacterial species but is of viral origin. The protein forms an oligomer and functions as a processive alkaline exonuclease that digests linear double-stranded DNA in a Mg(2+)-dependent reaction, It has a preference for 5'-phosphorylated DNA ends. It thus forms part of the two-component SynExo viral recombinase functional unit.	1.68114e-32
NZ_CP054268.1\|WP_004151295.1\|4077374_4077668_-\|protein-ren	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	0.000668668
NZ_CP054268.1\|WP_004151291.1\|4075102_4075750_-\|DUF551-domain-containing-protein	gnl\|CDD\|367946	pfam04448, DUF551, Protein of unknown function (DUF551). This family represents the carboxy terminus of a protein of unknown function, found in dsDNA viruses with no RNA stage, including bacteriophages lambda and P22, and also in some Escherichia coli prophages.	8.71432e-11
NZ_CP054268.1\|WP_004151305.1\|4082772_4083618_+\|phage-recombination-protein-Bet	gnl\|CDD\|273871	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet. This model represents the phage recombination protein Bet from a number of phage, including phage lambda. All members of this family are found in phage genomes or in putative prophage regions of bacterial genomes. [Mobile and extrachromosomal element functions, Prophage functions].	3.75286e-34
NZ_CP054268.1\|WP_004151300.1\|4080834_4081524_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225484	COG2932, COG2932, Predicted transcriptional regulator [Transcription].	1.58097e-27
NZ_CP054268.1\|WP_004151288.1\|4074146_4074602_-\|hypothetical-protein	gnl\|CDD\|182057	PRK09741, PRK09741, hypothetical protein; Provisional.	1.50704e-78
NZ_CP054268.1\|WP_004151287.1\|4073976_4074147_-\|NinE-family-protein	gnl\|CDD\|182029	PRK09689, PRK09689, prophage protein NinE; Provisional.	1.47696e-19
NZ_CP054268.1\|WP_001548453.1\|4080211_4080433_-\|hypothetical-protein	gnl\|CDD\|336083	pfam05269, Phage_CII, Bacteriophage CII protein. This family consists of several phage CII regulatory proteins. CII plays a key role in the lysis-lysogeny decision in bacteriophage lambda and related phages.	1.55058e-09
NZ_CP054268.1\|WP_004151293.1\|4075922_4076765_-\|ead/Ea22-like-family-protein	gnl\|CDD\|379401	pfam13935, Ead_Ea22, Ead/Ea22-like protein. This family contains phage proteins and bacterial proteins that are likely to represent integrated phage proteins. This family includes the Lambda phage Ea22 early protein as well as the Bacteriophage P22 Ead protein.	0.000117969
NZ_CP054268.1\|WP_004151286.1\|4073348_4073984_-\|recombination-protein-NinG	gnl\|CDD\|368603	pfam05766, NinG, Bacteriophage Lambda NinG protein. NinG or Rap is involved in recombination. Rap (recombination adept with plasmid) increases lambda-by-plasmid recombination catalyzed by Escherichia coli's RecBCD pathway.	9.44908e-60
NZ_CP054268.1\|WP_004230547.1\|4077667_4079083_-\|AAA-family-ATPase	gnl\|CDD\|274672	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model. [Mobile and extrachromosomal element functions, Prophage functions].	9.32956e-159
NZ_CP054268.1\|WP_004151299.1\|4080473_4080707_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|374243	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT. YdaS_antitoxin is a family of putative bacterial antitoxins, neutralising the toxin YdaT, family pfam06254.	9.32854e-22

>NZ_CP054268.1|WP_004230547.1|4077667_4079083_-|AAA-family-ATPase
MTPPHSIEAEQSVLGGLLLDDDNSERTQKVLSILKPESFYARPHQVIFAEMRQMYRDHKPVDLLTLFDALESKGLTETVGGFAYLAEMSKNTPSAANIVAYAMRVRETAMERYGIEKTTKAIELLYARNGMTAEQKFDAIQGLFTEITEHVKTGRRTGLRTFYDAVTDWSAEFDERLKPDGRSRGLSTGIRSLDELLGVKRIVRGSLFVIGARPKMGKTTLYTQMGINCATVENEPALMFSLEMPEGQMVEKITAQKGRISPNLFYPDMTKDDYGYRGDWNSDLQKATGVMGALIETNNLLIDDTPGISLAHVMAESRRIKRERGKVGMILVDYLTLMTADKAERNDLAYGLITKGLKILAKELDCVVVLLTQLNRDLEKRTNKRPLPSDSRDTGQIEQDCDYWLAIYREGAYDENANQSDTELLLRLNRHGETGVVYCEQRHGAIYDCDQEAASQRRREKEQKPTKRGGF
>NZ_CP054268.1|WP_004151295.1|4077374_4077668_-|protein-ren
MTGKDAILNYLKTHKTCSSPDVAAASGMTHTCINQAANILAKQGVLVAEARVWRTVYYRLATEEEIAGRKSTNQIFNECRQSPAMKRVLAVYGRTSA
>NZ_CP054268.1|WP_004151294.1|4076871_4077378_-|hypothetical-protein
MTITLQAVNKLIASMESAGELSIREQKFLKLAKEFRICSASLDAAIKTGNMLADQNAQLAAENVALKDINAWCKTDAFKNMYREFKTAEALGCSDADCMHDAMLVAIMHAPATPATDRIVAGIKADGVEEFAAKLRIPGDDQFFDALAKGIALAADDFAKQLREGADK
>NZ_CP054268.1|WP_004151293.1|4075922_4076765_-|ead/Ea22-like-family-protein
MTDITELAQSLKAAAEKASNGDWVKESGDGWEACCSANDQANGGFIIAHFVGPDAAENCEFVQAANPANVLALVEALEYYKSREERVTSLVRDNSKSWDELYRQVEAKGKRNVELVEALESEKRICATWRKTAESTSEKLEKAQAAERRWHRVASRVHEQACESDVKIDELEAIRAAAEKLVRCKGRYHSEQNYRALAALFGVNTPDLPPLEHENVHYADAAEMEIEALRQRIAELESRTVKLPPRVDSSNVPFAGNAWNCCLDEVEKRLTAAGIKMEAE
>NZ_CP054268.1|WP_004151292.1|4075746_4075923_-|hypothetical-protein
MAERWKIYLTIAFIGLGATPISMVAAKIDVPVWALIAGHCGATIAGFICAELGRGANQ
>NZ_CP054268.1|WP_004151291.1|4075102_4075750_-|DUF551-domain-containing-protein
MTNNQLAENSVIQLLNSVKLARDNAELADNRVDHSFYYALTIALEELQERRKAAMDSEPVLWAWHHLDMWHVTSHDGRARDLWLSGFKVIPLYRHAQPVLVIPDEMTAEQAYEIGYYYGDPVDVFARGANWMRQHIIDSTLAAAPQSPGSDPATVPGKWISVSERMPENDGAYLCWDNRYVTTYAFIFGAWQANQFIAKNITHWMPLPAGPQEVR
>NZ_CP054268.1|WP_004151288.1|4074146_4074602_-|hypothetical-protein
MNIPQCGIKLHNGNFSAIGKILQEQLSDGKCLRLQVKEWREKRSLSQNALSHMWYAEISEYLINSGRTDATPEWVKRNLKKTYLGCEEVTYTDFITGEKTTTWEPRHTSDLDTGEMHIFLTKVEAWCAQFGLALTIPHGCEYQQLQQKQEA
>NZ_CP054268.1|WP_004151287.1|4073976_4074147_-|NinE-family-protein
MSSLLAKVIERGIFRVPARRKRKVEDKPSDIPTLKDYTARLVDKKWLRLRARRPHA
>NZ_CP054268.1|WP_004151286.1|4073348_4073984_-|recombination-protein-NinG
MRKPARRKCAHCREWFHPAREGQVVCSFECASAIGKKQTAKAREAAKARAVKRQRESEKEGRQRRKARLAELRPNGYYKAQAQKAFNAYIRARDAALPCISCGETNPPDLHGGQWDCGHFKTVGAYPELRFEERNAHKQCKSCNAGAGKYTAKELTVAQQYEAGLVARYGQEYVDWLNGPHEMTNYRREDFIRIRDEYRAKLKALKQREAA
>NZ_CP054268.1|WP_004151285.1|4073214_4073352_-|YlcG-family-protein
MNHDIIERIRDRWKKLRLLRSRGTVLVDYLILRNFIASLSRGSYE
>NZ_CP054268.1|WP_004151298.1|4079979_4080126_-|hypothetical-protein
MPKSNRFYQAQTHKNVTRDRFIRSVNPVVGMKMRAILEELKRKEEGRE
>NZ_CP054268.1|WP_001548453.1|4080211_4080433_-|hypothetical-protein
MESSTTRNKVEARRIESWLHSQIAELGTTNIAKVAGVNKSTVSRWRESLLPNMSLLLAILISNRPGEKGDFEA
>NZ_CP054268.1|WP_004151299.1|4080473_4080707_-|helix-turn-helix-domain-containing-protein
MKNPAVEKAISIAGSQKELAKRCGKAQSTICDWLNGKKRISPVHVPDLVAAVNGEIKAYEFRPDLPSIFPPPNNSAA
>NZ_CP054268.1|WP_004151300.1|4080834_4081524_+|helix-turn-helix-transcriptional-regulator
MDFSERLARAMSLAGYTQGRLAKEVGMAQSSVNKLLNGANGSRKTVEIASVLGVRPEWLSTGAGEMLADSIQITQMQTPVTPQNGIYRVDVLDVKASAGPGALITNDFIETIRAIEYTSEQARSLFGNRPAHHIKVITVTGDSMDTTISPGDEIFVDISSTHFDSDGVYVFVFGKTLHVKRLQMQRDRLAVISDNPIYEKWYVEPGDEDQFYVMARVLLRQSIEYKRFA
>NZ_CP054268.1|WP_004151301.1|4081874_4082090_+|hypothetical-protein
MSKENNGGPAYPTQGYEGLTVRDYFAAKAMQGWLAGYPAGINHPARSEEGFTVAELSYLMADAMLKAREEV
>NZ_CP054268.1|WP_004151302.1|4082086_4082197_+|hypothetical-protein
MSKQGIRSLIYCLLICGVIWSAVVIKILHATGVFNG
>NZ_CP054268.1|WP_004151303.1|4082189_4082384_+|hypothetical-protein
MANSIPNNGRAVMMRNRRTGAAWLVSFDYRDGSYWHEPQGNLRHIRRPYASRSIEPNLVPAGTH
>NZ_CP054268.1|WP_004151304.1|4082472_4082757_+|host-nuclease-inhibitor-GamL
MNAYRAYDVIEERKWAEQTLTEEKQKWIEDRAKEVFDSLPEDPYAALRQSVSSKSFPYEGLRSDKAGEVYNDLRTAIAYAQAEYDWDHRTGCPF
>NZ_CP054268.1|WP_004151305.1|4082772_4083618_+|phage-recombination-protein-Bet
MANELVITASSLAERGIDGATWSALKNSIYPGAKDESVMMALDYCRARNLDPLLKPVHLVPMSVKDSKSGKSEWRDVVMPGIGLYRIQADRSGDYAGAKEPEFGPDVTLTLTGIEVTVPQWCKYTVSKRMPSGEIVEFSAKEYWVENYATAGRDTTAPNAMWKKRPYGQLAKCAEAQALRKAWPEIGQQPTAEEMEGKTLEVDARDVTPRSTPEAPPLVASEETLQAITDLLTSLNKDWEQDFLPLCSNIFKRDIFQASQLTEEEAQKGFSFLQKKAQVAA
>NZ_CP054268.1|WP_004151306.1|4083614_4084295_+|YqaJ-viral-recombinase-family-protein
MTPEIILERTGIDVTRVEQGDESWHRLRLGVITASEVHNVISKPKSGKKWTDMKMSYFLTLLAEVCTGVAPEVNAKALAWGKQYEADARTLFEFTTDVKVTESPILFRDEGMRTACSPDGLCSDGRGLELKCPFTSRDFMKFRLGGFEAIKSAYMAQVQFSMWVTGKDAWYFANYDPRMKREGIHHVVVERDDKYMSDFNEMVPEFISKMDESLAEIGFTFGEQWK

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Click the colored protein region to show detailed information

Crispr_ID: NZ_CP054268_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP054268_2

4571622-4571716

Orphan

Consensus_repeat	Method
ACTATGGTTTTTATGGTTTTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP054268_2

>merge|NZ_CP054268|2|4571622-4571716|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATGGTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATGACTGTGGTTTTTATGGTTTTTATT

>NZ_CP054268|2|2|4571622-4571716|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATG	GTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATG
ACTGTGGTTTTTATGGTTTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054268.1\|WP_087749904.1\|4565796_4568703_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP054268.1\|WP_002888348.1\|4568715_4569375_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP054268.1\|WP_004147026.1\|4575274_4577623_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_CP054268.1\|WP_002888340.1\|4571857_4573483_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827
NZ_CP054268.1\|WP_002888324.1\|4579955_4580777_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP054268.1\|WP_002888370.1\|4557837_4558683_-\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
NZ_CP054268.1\|WP_002888368.1\|4559020_4560730_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NZ_CP054268.1\|WP_002888321.1\|4581161_4582010_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208
NZ_CP054268.1\|WP_002888349.1\|4563251_4565609_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_CP054268.1\|WP_002888329.1\|4577677_4578964_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP054268.1\|WP_002888323.1\|4580779_4581157_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
NZ_CP054268.1\|WP_002888332.1\|4574203_4575031_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP054268.1\|WP_002888345.1\|4570168_4571533_-\|2-hydroxycarboxylate-transporter-family-protein	unknown	unknown	gnl\|CDD\|377030
NZ_CP054268.1\|WP_002888320.1\|4582265_4582745_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
NZ_CP054268.1\|WP_002888337.1\|4573472_4574171_+\|response-regulator	unknown	unknown	gnl\|CDD\|226931
NZ_CP054268.1\|WP_002888353.1\|4562380_4563076_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
NZ_CP054268.1\|WP_002888347.1\|4569449_4569989_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|163145
NZ_CP054268.1\|WP_002888327.1\|4578969_4579959_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP054268.1\|WP_002888357.1\|4560740_4562243_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_CP054268.1\|WP_002888373.1\|4556941_4557709_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659

Protein	Function_ID	Function_description	E-value
NZ_CP054268.1\|WP_087749904.1\|4565796_4568703_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP054268.1\|WP_002888348.1\|4568715_4569375_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	2.4454e-161
NZ_CP054268.1\|WP_004147026.1\|4575274_4577623_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_CP054268.1\|WP_002888340.1\|4571857_4573483_+\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	6.55037e-173
NZ_CP054268.1\|WP_002888324.1\|4579955_4580777_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
NZ_CP054268.1\|WP_002888370.1\|4557837_4558683_-\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
NZ_CP054268.1\|WP_002888368.1\|4559020_4560730_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NZ_CP054268.1\|WP_002888321.1\|4581161_4582010_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
NZ_CP054268.1\|WP_002888349.1\|4563251_4565609_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_CP054268.1\|WP_002888329.1\|4577677_4578964_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NZ_CP054268.1\|WP_002888323.1\|4580779_4581157_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
NZ_CP054268.1\|WP_002888332.1\|4574203_4575031_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
NZ_CP054268.1\|WP_002888345.1\|4570168_4571533_-\|2-hydroxycarboxylate-transporter-family-protein	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
NZ_CP054268.1\|WP_002888320.1\|4582265_4582745_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.71656e-127
NZ_CP054268.1\|WP_002888337.1\|4573472_4574171_+\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	5.03078e-66
NZ_CP054268.1\|WP_002888353.1\|4562380_4563076_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
NZ_CP054268.1\|WP_002888347.1\|4569449_4569989_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	5.54697e-86
NZ_CP054268.1\|WP_002888327.1\|4578969_4579959_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP054268.1\|WP_002888357.1\|4560740_4562243_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_CP054268.1\|WP_002888373.1\|4556941_4557709_-\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	1.35562e-48

>NZ_CP054268.1|WP_002888345.1|4570168_4571533_-|2-hydroxycarboxylate-transporter-family-protein
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>NZ_CP054268.1|WP_002888347.1|4569449_4569989_-|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSVDTPAQAGVSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>NZ_CP054268.1|WP_002888348.1|4568715_4569375_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVARVWGHPQPAEGLVDLPLICDWPNRPKQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>NZ_CP054268.1|WP_087749904.1|4565796_4568703_+|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESIDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELSGIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>NZ_CP054268.1|WP_002888349.1|4563251_4565609_+|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLRDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIDRRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLIEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSHVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>NZ_CP054268.1|WP_002888353.1|4562380_4563076_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQGIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>NZ_CP054268.1|WP_002888357.1|4560740_4562243_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATVEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>NZ_CP054268.1|WP_002888368.1|4559020_4560730_+|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLSQSVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKESVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYDDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSKAALTH
>NZ_CP054268.1|WP_002888370.1|4557837_4558683_-|arabinose-operon-transcriptional-regulator-AraC
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVREACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>NZ_CP054268.1|WP_002888373.1|4556941_4557709_-|DedA-family-protein
MQALLEHFITQSTVYSLLAVMLVAFLESLALVGLILPGTVMMAGLGALIGGGEVNFWQAWLAGIVGCLLGDWISFWLGWRFKKPLHRWSFMKKNRALLEKTEHALHQHSMITILIGRFVGPTRPLVPMVAGMLDLPVAKFVLPNIIGCLLWPPLYFLPGILAGAAIDIPADENSASFKWLLLGAALLAWLAGWLCWRLWRSAKTSGDRLTRWLPRGRLLWLSPLMVALAATALTFVFRHPLMPVYLAILHKVIAR
>NZ_CP054268.1|WP_002888340.1|4571857_4573483_+|sensor-histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEAHDAS
>NZ_CP054268.1|WP_002888337.1|4573472_4574171_+|response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>NZ_CP054268.1|WP_002888332.1|4574203_4575031_-|co-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>NZ_CP054268.1|WP_004147026.1|4575274_4577623_+|LPS-assembly-protein-LptD
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>NZ_CP054268.1|WP_002888329.1|4577677_4578964_+|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>NZ_CP054268.1|WP_002888327.1|4578969_4579959_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDHDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>NZ_CP054268.1|WP_002888324.1|4579955_4580777_+|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>NZ_CP054268.1|WP_002888323.1|4580779_4581157_+|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>NZ_CP054268.1|WP_002888321.1|4581161_4582010_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKPLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>NZ_CP054268.1|WP_002888320.1|4582265_4582745_-|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVQWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR

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Crispr_ID: NZ_CP054268_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP054268_3

4817055-4817327

Orphan

Consensus_repeat	Method
GCCCGGCGGCGCTGCGCTTGCCGGGCCT	CRT
GCCCGGCGGCGCTGCGCTTGCCGGGCCTGGGGTATAGGGGC	PILER-CR

3 spacers

The CRISPR arrays of NZ_CP054268_3

>merge|NZ_CP054268|3|4817055-4817327|CRT,PILER-CR
GCCCGGCGGCGCTGCGCTTGCCGGGCCTACGGTATAGGAGCTTACGGGAGGATCCCGTAGGCCGGATCATCGCCCGGCGGCGCTGCGCTTGCCGGGCCGACGGTATAGGGGCTGGGCCGGGCCTAGCCGCCATCCGGCACAAAGGCGGGTATAGGTGCCCTGGAGCTTGCCGGGCCTGGGGTATGGGGGAGGATCCCGTAGGCCGTAGGCCGGATGGCGCCGGAGGTGTCCTGCCCGGCGGCGCTGCGCTTGCCGGGCCTGGGGTATATGGGC

>NZ_CP054268|3|1|4817055-4817314|CRT
GCCCGGCGGCGCTGCGCTTGCCGGGCCT	ACGGTATAGGAGCTTACGGGAGGATCCCGTAGGCCGGATCATC
GCCCGGCGGCGCTGCGCTTGCCGGGCCG	ACGGTATAGGGGCTGGGCCGGGCCTAGCCGCCATCCGGCACAAAGGCGGG
TATAGGTGCCCTGGAGCTTGCCGGGCCT	GGGGTATGGGGGAGGATCCCGTAGGCCGTAGGCCGGATGGCGCCGGAGGTGTCCT
GCCCGGCGGCGCTGCGCTTGCCGGGCCT

>NZ_CP054268|3|1|4817126-4817327|PILER-CR
GCCCGGCGGCGCTGCGCTTGCCGGGCCGACGGTATAGGGGC	TGGGCCGGGCCTAGCCGCCATCCGGCACAAAGGCGGGTATAGGTGCCCTGGA
GCTTGCCGGGCCTGGGGTATGGGGGAGGATCCCGTAGGCCG	TAGGCCGGATGGCGCCGGAGGTGTCCTGCCCGGCGGCGCTGC
GCTTGCCGGGCCTGGGGTATATGGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054268.1\|WP_004146797.1\|4813397_4815311_+\|5-dehydro-2-deoxygluconokinase	unknown	unknown	gnl\|CDD\|378281
NZ_CP054268.1\|WP_004152275.1\|4830565_4831069_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP054268.1\|WP_002886954.1\|4825515_4827027_+\|leucyl-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
NZ_CP054268.1\|WP_002886952.1\|4827589_4830445_+\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
NZ_CP054268.1\|WP_002886970.1\|4808042_4808942_-\|myo-inosose-2-dehydratase	unknown	unknown	gnl\|CDD\|275172
NZ_CP054268.1\|WP_004146794.1\|4818619_4820125_-\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143404
NZ_CP054268.1\|WP_002886974.1\|4806588_4807899_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270451
NZ_CP054268.1\|WP_004152190.1\|4815462_4816320_+\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
NZ_CP054268.1\|WP_002886980.1\|4803794_4804682_+\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP054268.1\|WP_004152191.1\|4810951_4812892_-\|3D-(3,5/4)-trihydroxycyclohexane-1,2-dione-acylhydrolase-(decyclizing)	unknown	unknown	gnl\|CDD\|275170
NZ_CP054268.1\|WP_002886959.1\|4817791_4818601_-\|5-deoxy-glucuronate-isomerase	unknown	unknown	gnl\|CDD\|226241
NZ_CP054268.1\|WP_002886956.1\|4822946_4824029_-\|LPS-export-ABC-transporter-permease-LptG	unknown	unknown	gnl\|CDD\|237900
NZ_CP054268.1\|WP_002886979.1\|4804692_4805517_+\|phosphodiesterase	unknown	unknown	gnl\|CDD\|277347
NZ_CP054268.1\|WP_002886953.1\|4827146_4827590_+\|DNA-polymerase-III-subunit-chi	unknown	unknown	gnl\|CDD\|235581
NZ_CP054268.1\|WP_002886955.1\|4824028_4825126_-\|LPS-export-ABC-transporter-permease-LptF	unknown	unknown	gnl\|CDD\|185075
NZ_CP054268.1\|WP_002886958.1\|4820475_4821297_+\|TIM-barrel-protein	unknown	unknown	gnl\|CDD\|226615
NZ_CP054268.1\|WP_004152193.1\|4808965_4809850_-\|sugar-phosphate-isomerase/epimerase	unknown	unknown	gnl\|CDD\|224007
NZ_CP054268.1\|WP_004152192.1\|4809891_4810905_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP054268.1\|WP_002886975.1\|4805522_4806596_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226359
NZ_CP054268.1\|WP_002886957.1\|4821395_4822898_+\|DUF853-domain-containing-protein	unknown	unknown	gnl\|CDD\|283518

Protein	Function_ID	Function_description	E-value
NZ_CP054268.1\|WP_004146797.1\|4813397_4815311_+\|5-dehydro-2-deoxygluconokinase	gnl\|CDD\|378281	pfam09863, DUF2090, Uncharacterized protein conserved in bacteria (DUF2090). This domain, found in various prokaryotic carbohydrate kinases, has no known function.	0
NZ_CP054268.1\|WP_004152275.1\|4830565_4831069_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	7.98013e-19
NZ_CP054268.1\|WP_002886954.1\|4825515_4827027_+\|leucyl-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
NZ_CP054268.1\|WP_002886952.1\|4827589_4830445_+\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
NZ_CP054268.1\|WP_002886970.1\|4808042_4808942_-\|myo-inosose-2-dehydratase	gnl\|CDD\|275172	TIGR04379, myo-inositol_catabolism_protein, myo-inosose-2 dehydratase. Members of this family include the enzyme myo-inosose-2 dehydratase, product of the gene iolE, as found in inositol utilization cassettes in many species. [Energy metabolism, Sugars].	1.05045e-151
NZ_CP054268.1\|WP_004146794.1\|4818619_4820125_-\|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase	gnl\|CDD\|143404	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2. Methylmalonate semialdehyde dehydrogenase (MMSDH, EC=1.2.1.27) [acylating] from Bacillus subtilis is involved in valine metabolism and catalyses the NAD+- and CoA-dependent oxidation of methylmalonate semialdehyde into propionyl-CoA. Mitochondrial human MMSDH ALDH6A1 and Arabidopsis MMSDH ALDH6B2 are also present in this CD.	0
NZ_CP054268.1\|WP_002886974.1\|4806588_4807899_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270451	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold. This group includes the periplasmic component of an ABC transport system specific for sn-glycerol-3-phosphate (G3P) and closely related proteins from archaea and bacteria. Under phophate starvation conditions, Escherichia coli can utilize G3P as phosphate source when exclusively imported by an ATP-binding cassette (ABC) transporter composed of the periplasmic binding protein, UgpB, the transmembrane subunits, UgpA and UgpE, and a homodimer of the nucleotide binding subunit, UgpC. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 proteins are comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	2.05328e-111
NZ_CP054268.1\|WP_004152190.1\|4815462_4816320_+\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	9.80298e-76
NZ_CP054268.1\|WP_002886980.1\|4803794_4804682_+\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	1.21468e-67
NZ_CP054268.1\|WP_004152191.1\|4810951_4812892_-\|3D-(3,5/4)-trihydroxycyclohexane-1,2-dione-acylhydrolase-(decyclizing)	gnl\|CDD\|275170	TIGR04377, 3D-35/4-trihydroxycyclohexane-12-dione_hydrolase, 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase. Members of this protein family, 3,5/4-trihydroxycyclohexa-1,2-dione hydrolase (iolD), represent one of eight enzymes in a pathway converting myo-inositol to acetyl-CoA. IolD hydrolyzes the cyclic molecule 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione to yield 5-deoxy-D-glucuronic acid. TPP is a cofactor. [Energy metabolism, Sugars].	0
NZ_CP054268.1\|WP_002886959.1\|4817791_4818601_-\|5-deoxy-glucuronate-isomerase	gnl\|CDD\|226241	COG3718, IolB, Uncharacterized enzyme involved in inositol metabolism [Carbohydrate transport and metabolism].	1.0853e-154
NZ_CP054268.1\|WP_002886956.1\|4822946_4824029_-\|LPS-export-ABC-transporter-permease-LptG	gnl\|CDD\|237900	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional.	0
NZ_CP054268.1\|WP_002886979.1\|4804692_4805517_+\|phosphodiesterase	gnl\|CDD\|277347	cd07402, MPP_GpdQ, Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	5.95406e-91
NZ_CP054268.1\|WP_002886953.1\|4827146_4827590_+\|DNA-polymerase-III-subunit-chi	gnl\|CDD\|235581	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated.	8.31766e-69
NZ_CP054268.1\|WP_002886955.1\|4824028_4825126_-\|LPS-export-ABC-transporter-permease-LptF	gnl\|CDD\|185075	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional.	0
NZ_CP054268.1\|WP_002886958.1\|4820475_4821297_+\|TIM-barrel-protein	gnl\|CDD\|226615	COG4130, COG4130, Predicted sugar epimerase [Carbohydrate transport and metabolism].	2.69228e-95
NZ_CP054268.1\|WP_004152193.1\|4808965_4809850_-\|sugar-phosphate-isomerase/epimerase	gnl\|CDD\|224007	COG1082, IolE, Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism].	4.59137e-43
NZ_CP054268.1\|WP_004152192.1\|4809891_4810905_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	8.52594e-61
NZ_CP054268.1\|WP_002886975.1\|4805522_4806596_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226359	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism].	1.05288e-154
NZ_CP054268.1\|WP_002886957.1\|4821395_4822898_+\|DUF853-domain-containing-protein	gnl\|CDD\|283518	pfam05872, DUF853, Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. BMEI1370 is thought to be an ATPase.	0

>NZ_CP054268.1|WP_004152190.1|4815462_4816320_+|MurR/RpiR-family-transcriptional-regulator
MANNPTQLTILQDEIRRRYDTLSKRLKQVARYILDNSNSVAFDTVASIAQQADVPPSTLIRFANAFGFSGFNEMKQMFKQHLMEETANYTERARLFRQTTSDESSPPETPTEILNMFTMVNNQALQQLAMQTSSDDLERAVALLGEAENIYVIGLRRSFSVASYLTYALRHLDRKAFLIDGLGGMFTEQLSLVGPKDVVVAVSFSPYAREVVELVELGAQRKARQIAITDSQVSPLAAFSDVCFVVREAQVDGFRSQVASLCLAQTLAVSLALNSSQESEAKQKA
>NZ_CP054268.1|WP_004146797.1|4813397_4815311_+|5-dehydro-2-deoxygluconokinase
MNAAVKRLDVICIGRVAVDLYAQQIGSRLEDVASFAKYLGGSSGNVAFGTAIQGLKSAMLARVGDEHNGRFLRETLNRAGVDTEYLITDKSRLTALVMLGIKDQETFPLIFYRDNCADMALTPDDISEEYIASSRALAVTGTHLSHANTRAAVLKALEYARRHGLRTALDIDYRPVLWGLTSLGDGETRFIESGPVTSQLQEVLHLFDLVVGTEEEFHIAGGSTDTLTALKNVRNATKATLVCKRGPMGCVVLEGDIPDSWDQVPLQQGVRVEVLNVLGAGDAFMSGLLRGWLNDEGWEQACRYANACGALVVSRHGCAPAMPTKVELDDYLQRAESVPRPDVDERLNHLHRVTSRRQQWPELCIFAFDHRKQLADLARETGRDEACIPQLKLLLLAAAEAAAQEAGLDQRSGILADGTYGQRALNAITGKGWWIGRPIELPSSRPLRLEHGNIGSQLIDWPLEHVVKCLVFYHPDDPAALRAEQDALLLEVWQACNKSGHELLLEVILPENGPDKDERHYHTMLEHFYQLGIKPDWWKLPPLSSASWQQITALIEREDPWSRGILILGLDAPSDKLRAGFAEAAAHPMIKGFAVGRTIFGQPSRRWMQGELSDEALIEEVKRNYLTLIGYWREARR
>NZ_CP054268.1|WP_004152191.1|4810951_4812892_-|3D-(3,5/4)-trihydroxycyclohexane-1,2-dione-acylhydrolase-(decyclizing)
MGKLRLTTAQALVKFLDNQYLEVDGVELKFVKGIFAIFGHGNVLGLGQALEQDSGDMRVYQGRNEQGMAHAATGFARQALRRQIIACTSSIGPGAANMITAAGTASANRIPLLLLPGDVFATRQPDPVLQQIEQSYDLSISTNDAFRAVSKYWDRITRPEQLMSACINAMRVLTDPAETGAVTLCLPQDVQGEAWDYPESFFARRVHRLDRRPASAAQLADAVAAIKASRKPLIVCGGGVKYSGAGEALSRFAERYGVPFAETQAGKGTVVSSHPLNVGGVGETGCLAANLLAKEADLVIGVGTRFSDFTTASKWIFQHPEVRFLNINVSNFDAWKLDGIAMLADAREAMTALDAALADSGWQAGWGAQIESVQSRQLKETQRVYQAVWQEKSFVPEIDDHLDRESVYREFRQITDSTLTQSSVLGVLNETLPAEAVIVAAAGSLPGDLQRVWRNRAENTYHVEYGYSCMGYEVNAALGVKLAQPQSEVYSLVGDGSFMMLHSELVTSLQERAKINVVLFDNMANGCINNLQMEHGMDSFGTEFRYRQPETGQLQGGLVPVDFATIAAGYGCKTWRVTTLDELRHALDAARRETVSTLIDIKVLPKTMVHKYGSWWNVGVAQTALSERIRKVAQMINEKRAQARDY
>NZ_CP054268.1|WP_004152192.1|4809891_4810905_-|Gfo/Idh/MocA-family-oxidoreductase
MSLKLGVIGAGAIGKEHIRRCTQVLQGATVVAVSDINADNARAAVALPGVQAEVYADGHDVINASDVDAILVTSWDPTHEEYTLAAIAAGKPVFCEKPLAMSAEGCRRIVDAEMKAGRRLVQVGFMRPYDEGYLALKKVIDDGDIGAPLMLRCAHRNQSVGENYTTDMAITNTLIHELDVLRWLLNDDYRSVQVRFPRSTSHTHARLKDPQIVSFETKKGTLIDVEVFVNCQYGYDIQCEVVGETGIARLPEPSAVQMRKSASLSTAILTDWKDRFIKAYDVELQAFINDVKAGQLHGPSAWDGYAASVAADACIKAQGTSEPVEVTLPECPAFYKR
>NZ_CP054268.1|WP_004152193.1|4808965_4809850_-|sugar-phosphate-isomerase/epimerase
MKIAFDVDVIKDLGITRMVHQVAEWGYKYIEQSPHPQINPFYKHPRASREIMAEYKQALRDTGLELSSFICVYRWSGPDELRRQAAVKNWKRLVEIAVEMGVQVINTEFSGDPNQPEICDEMFYRSMEELLPIFEREGIRVEIQAHPWDFCEENNETVDIVKSFRSDNVKYVYSVPHTFFYDKGVGDVASMLRYAGSDLSHVLIADTRNHTKHCRYIVNPPGVDAVVHQHVGVGEGDVDFDALFRTLREMKFAEQTFKVGGEPIVATSLFGYPEKMKYQAVETRELIERELLRR
>NZ_CP054268.1|WP_002886970.1|4808042_4808942_-|myo-inosose-2-dehydratase
MNKDNVKLAIAPIGWTNDDMPELGSENTFQQIVSEMALAGFTGSEVGSKYPRDPAVLKPMLDIRGIQICNAWFSTFFANGQREKTIDEFVNHMNFLHAMGAKVIGCSEQSGSIQGLDKPILGDAKPCFSDEEWQRVAEGYNTLGRLAAEKGMQVCLHHHMGTGIQTTAEIDKFMSLVDERVFLLFDTGHAWYSEGGEAPMLAILKKYLPRINHVHLKDVRPPVIDQVRRDGLSFLDGVKKGTFTVPGDGVIDFRPVFKLLDDFGYKGWMVVEAEQDPALANPFEYAVKARKYIRETAGI
>NZ_CP054268.1|WP_002886974.1|4806588_4807899_+|ABC-transporter-substrate-binding-protein
MFKPFTLVAVGLSLALSGAALAKEKIDFMFPAPVDGKLTMEMTRVIKQFNDSQQDVEVRGIFTGNYDTTKIKAESAQKAGQPPALVIMSANFTTDLALKDEILPMDELFKYGDQKAGDFLQKEFWPAMHKNAQVMGTTYAIPFHNSTPILYYNKTMFDQAGIKQPPQTWAELLADAKKLTDESKGQWGIMLPSTNDDYGGWIFSALVRANGGKYFNEDYPGEVYYNSPTAIGALRFWQDLIYKDKVMPSGVLNSKQISAAFFSGKLGMAMLSTGALGFMRENSKDFELGVAMLPAKEQRAVPIGGASLVSFKGINEAQKKAAYQFLTYLVSPEVNGAWSRFTGYFSPRKASYDTPEMKAYLQQDPRAAIALEQLKYAHPWYSTWETVAVRKAMENQLAAVVNDAKVTPEAAVQAAQKEADALMKPYVDKTALAEVK
>NZ_CP054268.1|WP_002886975.1|4805522_4806596_+|ABC-transporter-ATP-binding-protein
MLSLQNISKRFDGKPALSALSLDIHEGEFVVLVGPSGCGKSTLLRLLAGLEPVSEGQIWLHDENITATTPRERNFAMIFQNYALFPHLSVRDNITFGMKVRKEEKSSWQPRVDKVAQMLQLEALLDRKPAKLSGGQRQRVAMARAIVRNPRLFLMDEPLSNLDARLRSEVRDSIMALHQQLKTSTIYVTHDQTEAMSMADRIVVMNGGHVQQVGRPEYLYANPANLFVAGFIGSPAMNLLSLPCVDGNVQLGEQRHPLPPRHRDQTRVWLGVRPEHITDRVEEGHLRLPATVLQRELMGADYLLHVSTPIGTLRFSRRHRGTVPEKGESLQIGFSPADVHLFHAETQHNLLMECNHV
>NZ_CP054268.1|WP_002886979.1|4804692_4805517_+|phosphodiesterase
MLLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSLNYPLYLIPGNHDDKAHFLEHLHPLCPQLGNDPQNMRYAVDDFATRLLFIDSSHAGTSKGWLTDETISWLEAQLFEGGDKPATIFMHHPPLPLGNAQMDPIACENGHRLLALVERFPSLTRIFCGHNHSLTMTQYRQALISTIPGTVHQVPYCHEDTRPYYDLSPASCLMHRQVGEQWVSYQHSLAHYAGPWLYDENISCPTEER
>NZ_CP054268.1|WP_002886980.1|4803794_4804682_+|carbohydrate-ABC-transporter-permease
MSAEISPLLVRTPAAARPLWLRLRRSSPFTLTVLMCCLALLWVSPFIWMLATSFSATTFGDDMASLLPRLPLTLDNFRDAWNSADWLSLYANTLIFTFGTFFVQLLTITTAGYVFACHEFRGKQTLFLLFLVQLMIMPVVMMVPNMLTLKTFGLLNTLTGVMMPYFTSAFGVFLMRQAFLAIPKELEEAALMEGCRWWQVLFRVLLPMSWPSVLAFATVSITYHWNEYLWPLMMLNDPDKQVLTVGLVSFAMGAESGGQWGTIGAGTLMVCLPLMLAFILFQKQFLRSFGFSGIK
>NZ_CP054268.1|WP_002886959.1|4817791_4818601_-|5-deoxy-glucuronate-isomerase
MSLLAKSRKEGQIQHITPQSAGWRYIGFDVWMLKKGQTVTLESGDRELCLVLVAGLASVKTQHADFPNLGKRMSPFERTPPWSVYIPPQDKVEVTADSDLELAVCSAPGKGSFPARLIRPEDVGVEHRGKGRNQRRVHNILPDSAEADCLLVVEVYTDEGATSSWPSHKHDTAQPGKETQLEETYYHRFDPPQGFAFQRVYTDDRSLDACMAPYNHDVVMVPRGYHPVAAIAGYDSYYLNVMAGPDRKWLFTWEDDHAWINTPEYPRHD
>NZ_CP054268.1|WP_004146794.1|4818619_4820125_-|CoA-acylating-methylmalonate-semialdehyde-dehydrogenase
MTITGNFIGGKTVISSSNETMPVYDPATGKAVREVTVSTAQEVSEAIQVARDAFDSWSRTTPLRRARVLFNFKMLLEQHVEELAGIIVSEHGKVWSDALGELTRGMEVVEFACGIPHLIKGEYSSDVGTGVDSYSLMQPLGVVAGITPFNFPAMVPMWMFPLALACGNSFVLKPPALAPTAAVRLAELLKEAGLPDGVFNVVHCSNEDAEQLYTDPRIAAVSFVGSSGVAEYIYKTASAHGKRVQAFGAAKNHAIVMPDADLDATVNAIMGGAFGSAGERCMALPVVVAVGDETADKLIARLKPLVEALKVGPGCMRGQEENEMGPVVSDTHQKKVLGYIDKGESEGAKLVVDGRKLRVPGYDAGYYVGGTLFDHVTPEMTIWREEIFGPVLGIVRAADYDSALELVNSHEFGNGSAVFTSNGHTAREFVHDVQAGMVGVNVPVPVPMAFHSFGGWKRSVFGALNVHGPDGVRFYTRMKTATVRWPAGQQTVSEFSMPTLG
>NZ_CP054268.1|WP_002886958.1|4820475_4821297_+|TIM-barrel-protein
MAIAMQRFCINRKIAPALSIEAFFRLVNRLGLNKVELRNDLPSGKVTDDLSHQQVRELAARYHIEILTINAVYPFNRRSEEVRQLTESLLKEAQAIGAKSLVLCPLNDGSEVPASETLGALRDLAPLFAFYGIHGLVEPLGFPQSSLRSAHQAQTLIHDARVPFKLLLDTFHHHLYPQAADEFSQVEVADIGLVHLSGVDDSRPREQLTDAERIMLTPKDRLGTCEQVKALEARGYQGVYAFEPFAPELAQWSEADIEREIEQSIALIQRHCA
>NZ_CP054268.1|WP_002886957.1|4821395_4822898_+|DUF853-domain-containing-protein
MSSPLLIARTLDNALYLLPAMANRHGLITGATGTGKTVTLQKLAESFSEIGVPVFMADVKGDLTGIAAAGQSSEKLQARLEKIGVSDWEPHANPVVLWDIFGEKGHPVRATVSDLGPLLLARLLNLNEVQSGVLNIIFRIADDRGLLLLDFKDLRAITQFIGDNAKSFQNQYGNINSASIGAIQRGLLTLEQQGAEHFFGEPMLDIADWMRVDASGKGVINILSAEKLYQMPKLYAASLLWMLSELYERLPEAGDLDKPKLVFFFDEAHLLFNDAPQVLLDKIEQVIRLIRSKGVGVYFVSQNPADIPDAVLGQLGNRVQHALRAFTPKDQKAVKTAAQTMRANPAFSTEQAIQELGTGEALISFLDEKGSPSVVERAMVIAPCSRMGPVSDDERNGLLNHSPLYGKYEEEVDRESAFEMLQQGVQVATGQQSAPPAKGQQNGDDDGLLGGLKDILFGSTGPRGGKRDGIVQTAAKSAVRQVTNQIVRGMLGSLLGGRKR
>NZ_CP054268.1|WP_002886956.1|4822946_4824029_-|LPS-export-ABC-transporter-permease-LptG
MQAFGVLDRYIGKTIFNTIMMTLFMLVSLSGIIKFVDQLKKSGQGSYDALGAGLYTILSVPKDIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRLQVALAVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQQMYGGSLLSTQQGLWAKDGHNFVYIERVKGNDELGGVSIYAFNPERRLQSVRYAASAKFDSENKVWRLSQVDESDLTDPKQVTGSQMVSGTWKTNLTPDKLGVVALDPDALSISGLHNYVKYLKSSGQDPGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFIFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLMMRKA
>NZ_CP054268.1|WP_002886955.1|4824028_4825126_-|LPS-export-ABC-transporter-permease-LptF
MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPTNLVLSLLGLGIPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLIKAAMILALFTGAVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQASDGNAVMFIESVNGNRFHDVFLAQLRPKGNARPSVVVADSGELSQQKDGSQVVTLNKGTRFEGTAMLRDFRITDFNNYQAIIGHQAVSADPDDTEQMDMRTLWKTHTDRARAELHWRFTLVATVFIMALMVVPLSVVNPRQGRVLSMLPAMLLYLVFFLLQTSIKSNGGKGKMDPAIWMWAINLLYFALAVLLNLWDTVPMRRFRARFNKGAA
>NZ_CP054268.1|WP_002886954.1|4825515_4827027_+|leucyl-aminopeptidase
MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTLLLHHVPNILSERILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFNVPTRRELTSGERAIQHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADTYSKNVITRVIGEQQMRELGMNAYLAVGNGSQNESLMSVIEYKGNPAEDARPIVLVGKGLTFDSGGISIKPAEGMDEMKYDMCGAAAVYGVMRMVAELQLPLNVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFEPEAVIDVATLTGACVIALGHHITGLMSNHNPLAHELIGASELAGDRAWRLPLADEFQDQLESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAGTAWRSGKAKGATGRPVALLSQFLLNRAGFNGEE
>NZ_CP054268.1|WP_002886953.1|4827146_4827590_+|DNA-polymerase-III-subunit-chi
MKNATFYLLDNDATVDGLSAVEQLVCDIAAERWRNGKRVLIACEDEQQAIRLDEALWSRPPESFVPHNLAGEGPRGGAPVEIAWPQKRNSSPRDILISLRLNFADFATAFTEVIDFVPYEDNLKQLARERYKAYRMAGFNLNTATWK
>NZ_CP054268.1|WP_002886952.1|4827589_4830445_+|valine--tRNA-ligase
MEKTYNPQDIEQPLYEHWEKQGYFKPNGDESQESFCIMIPPPNVTGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQAGTDHAGIATQMVVERKIAAEEGKTRHDYGRDAFIDKIWQWKAESGGTITRQMRRLGNSVDWERERFTMDEGLSNAVKEVFVRLYKEDLIYRGKRLVNWDPKLRTAISDLEVENRESKGSMWHIRYPLADGAKTADGKDYLVVATTRPETLLGDTGVAVNPEDPRYKDLIGKFVVLPLVNRRIPIVGDEHADMEKGTGCVKITPAHDFNDYEVGRRHQLPMINILTFDGDIRESAEVYDTKGNESDVYSSEIPAEFQKLERFAARKAVVAAVDALGLLEEIKPHDLTVPYGDRGGVVIEPMLTDQWYVRADVLAKPAVEAVENGDIQFVPKQYENMYFSWMRDIQDWCISRQLWWGHRIPAWYDNDGNVYVGRSEDEVRQENNLSADVALRQDEDVLDTWFSSALWTFSTLGWPENTDALRQFHPTSVMVSGFDIIFFWIARMIMMTMHFIKDENGKPQVPFKTVYMTGLIRDDEGQKMSKSKGNVIDPLDMVDGITLPELLEKRTGNMMQPQLADKIRKRTEKQFPNGIEPHGTDALRFTLAALASTGRDINWDMKRLEGYRNFCNKLWNASRFVLMNTEDQDCGFNGGEMVLSLADRWIIAEFNHTVKAYREALDNFRFDIAAGILYEFTWNQFCDWYLELTKPVMNGGNEAELRGTRHTLVTVLEGLLRLAHPIIPFITETIWQRVKAICGITADTIMLQPFPQYDASQVDDAALADTEWLKQAIVAVRNIRAEMNIAPGKPLELLLRGCSKDAERRVNDNRSFLLNLARLESITVLPADDKGPVSVTKIVDGAELLIPMAGLINKEDELARLAKEVAKIEGEIGRIESKLANEGFVARAPEAVIAKEREKLEGYAEAKAKLIEQQAVIAAL
>NZ_CP054268.1|WP_004152275.1|4830565_4831069_+|GNAT-family-N-acetyltransferase
MNTSVPAATLLRRITAADNAAIARVIRQVSAEYGLTADKGYTVADPNLDELYELYSQPGSAYWVVEQEGEVVGGGGVAPLACSEPDICELQKMYFMTSARGQGLAKKLALLALDYAREQGFKRCYLETTAFLTEAIGLYEHLGFEHIDGPLGCTGHVDCEVRMLKTL

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Identity
NZ_CP054268_1	1.1\|4079528\|36\|NZ_CP054268\|CRISPRCasFinder	4079528-4079563	36	MK448233	Klebsiella phage ST11-VIM1phi8.1, complete genome	8447-8482	1.0
NZ_CP054268_1	1.1\|4079528\|36\|NZ_CP054268\|CRISPRCasFinder	4079528-4079563	36	MK448235	Klebsiella phage ST512-KPC3phi13.1, complete genome	8447-8482	1.0
NZ_CP054268_1	1.1\|4079528\|36\|NZ_CP054268\|CRISPRCasFinder	4079528-4079563	36	MK448231	Klebsiella phage ST101-KPC2phi6.1, complete genome	11383-11418	1.0

1. spacer 1.1|4079528|36|NZ_CP054268|CRISPRCasFinder matches to MK448233 (Klebsiella phage ST11-VIM1phi8.1, complete genome) position: , mismatch: 0, identity: 1.0

cctcgccggtacgcagcgtggttactgggtttgcgt	CRISPR spacer
cctcgccggtacgcagcgtggttactgggtttgcgt	Protospacer
************************************

2. spacer 1.1|4079528|36|NZ_CP054268|CRISPRCasFinder matches to MK448235 (Klebsiella phage ST512-KPC3phi13.1, complete genome) position: , mismatch: 0, identity: 1.0

cctcgccggtacgcagcgtggttactgggtttgcgt	CRISPR spacer
cctcgccggtacgcagcgtggttactgggtttgcgt	Protospacer
************************************

3. spacer 1.1|4079528|36|NZ_CP054268|CRISPRCasFinder matches to MK448231 (Klebsiella phage ST101-KPC2phi6.1, complete genome) position: , mismatch: 0, identity: 1.0

cctcgccggtacgcagcgtggttactgggtttgcgt	CRISPR spacer
cctcgccggtacgcagcgtggttactgggtttgcgt	Protospacer
************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

447474 : 480732

uncultured_Caudovirales_phage(75.0%)

protease,tail,tRNA,integrase,capsid,portal,head,terminase

attL 465082:465099|attR 481077:481094

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002919147.1\|447474_448422_-\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	2.2e-07	37.2
WP_002919144.1\|448436_448946_-	peptide deformylase	E3SLL2	Synechococcus_phage	2.6e-18	40.3
WP_002919139.1\|449074_450199_+	DNA-protecting protein DprA	NA	NA	NA	NA
WP_002919137.1\|450170_450644_+	DUF494 domain-containing protein	NA	NA	NA	NA
WP_004145330.1\|450669_451212_+	topoisomerase DNA-binding C4 zinc finger domain-containing protein	NA	NA	NA	NA
WP_002919132.1\|451216_451789_+	L-threonylcarbamoyladenylate synthase type 1 TsaC	NA	NA	NA	NA
WP_002919126.1\|451792_452611_+	shikimate dehydrogenase	NA	NA	NA	NA
WP_002919125.1\|452607_452865_+	DUF1488 domain-containing protein	NA	NA	NA	NA
WP_002919123.1\|452840_453395_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA
WP_002919103.1\|459190_459412_-	membrane protein	NA	NA	NA	NA
WP_002919102.1\|459705_462816_-	multidrug efflux RND transporter permease subunit	NA	NA	NA	NA
WP_002919101.1\|462828_463968_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_004150972.1\|464346_464997_+	acrEF/envCD operon transcriptional regulator	NA	NA	NA	NA
465082:465099	attL	NA	NA	NA	NA
WP_004150971.1\|465272_466499_+\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	1.8e-150	62.2
WP_004150970.1\|466591_467533_+	hypothetical protein	NA	NA	NA	NA
WP_001547839.1\|467714_467999_+	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_004150969.1\|468009_468789_+	phage antirepressor KilAC domain-containing protein	Q8HA02	Enterobacteria_phage	6.2e-40	51.5
WP_106918304.1\|469240_469510_+	host cell division inhibitor Icd-like protein	A0A2H4JGW3	uncultured_Caudovirales_phage	2.4e-44	94.4
WP_001549752.1\|469502_469691_+	hypothetical protein	NA	NA	NA	NA
WP_004150967.1\|469683_469998_+	hypothetical protein	NA	NA	NA	NA
WP_004150966.1\|469994_470363_+	hypothetical protein	A0A2H4JCX7	uncultured_Caudovirales_phage	3.7e-51	81.1
WP_001549749.1\|470359_470725_+	hypothetical protein	NA	NA	NA	NA
WP_004150965.1\|470724_472860_+	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	3.4e-205	62.4
WP_004150964.1\|473202_473538_+	hypothetical protein	NA	NA	NA	NA
WP_004150963.1\|473586_474099_-	hypothetical protein	NA	NA	NA	NA
WP_001549743.1\|474362_475529_+\|capsid	phage major capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	9.8e-207	95.9
WP_001547826.1\|475580_476141_+\|head,protease	HK97 family phage prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	1.2e-98	95.7
WP_004150962.1\|476142_477384_+\|portal	phage portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	1.0e-230	96.5
WP_004150961.1\|477380_477716_+\|head	phage head closure protein	A0A2H4JHK5	uncultured_Caudovirales_phage	3.7e-26	57.8
WP_001547824.1\|477712_478012_+\|head,tail	phage gp6-like head-tail connector protein	A0A2H4JD08	uncultured_Caudovirales_phage	3.4e-39	80.8
WP_004150959.1\|478011_478455_+	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	2.8e-77	91.8
WP_004150957.1\|478447_478600_+	hypothetical protein	A0A2H4JCY9	uncultured_Caudovirales_phage	2.4e-17	88.0
WP_000113647.1\|478730_479087_+\|terminase	phage terminase small subunit P27 family	A0A2H4JHS3	uncultured_Caudovirales_phage	5.5e-60	99.2
WP_004150955.1\|479070_480732_+\|terminase	terminase large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	0.0e+00	98.0
481077:481094	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1237211 : 1283446

Salmonella_phage(83.72%)

tail,lysis,tRNA,integrase,capsid,portal,head,plate,terminase

attL 1235505:1235551|attR 1272072:1272118

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1235505:1235551	attL	NA	NA	NA	NA
WP_004151020.1\|1237211_1238237_-\|integrase	site-specific integrase	A0A1S6L016	Salmonella_phage	1.5e-190	93.8
WP_004151019.1\|1238239_1238869_-	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	1.4e-61	54.5
WP_001397669.1\|1238991_1239234_+	hypothetical protein	A0A1S6KZZ6	Salmonella_phage	4.0e-38	98.8
WP_004151018.1\|1239266_1239776_+	phage regulatory CII family protein	A0A1S6L008	Salmonella_phage	1.1e-77	85.8
WP_004151017.1\|1239783_1239984_+	DUF2724 domain-containing protein	A0A1S6L005	Salmonella_phage	4.5e-19	68.8
WP_004144796.1\|1239947_1240286_+	DUF5347 domain-containing protein	A0A218M4I7	Erwinia_phage	6.2e-29	58.0
WP_004151016.1\|1240353_1240587_+	DUF2732 family protein	A0A1S6L021	Salmonella_phage	6.0e-31	90.9
WP_004151014.1\|1240586_1240814_+	TraR/DksA family transcriptional regulator	A0A1S6L007	Salmonella_phage	5.1e-35	92.0
WP_004151013.1\|1240810_1241662_+	DNA adenine methylase	A0A1S6L011	Salmonella_phage	2.2e-115	75.4
WP_004151012.1\|1241658_1244043_+	replication endonuclease	A0A1S6L028	Salmonella_phage	0.0e+00	87.9
WP_004151011.1\|1244205_1244394_+	hypothetical protein	A0A1S6L006	Salmonella_phage	2.2e-23	90.3
WP_004151010.1\|1244405_1244639_+	DinI family protein	A0A0M4S6H1	Salmonella_phage	2.0e-34	96.1
WP_004151009.1\|1244734_1245418_-	hypothetical protein	NA	NA	NA	NA
WP_004151008.1\|1245404_1246484_-	hypothetical protein	NA	NA	NA	NA
WP_004151007.1\|1246483_1247485_-	hypothetical protein	NA	NA	NA	NA
WP_024940854.1\|1248006_1248276_+	hypothetical protein	D2IZW1	Enterococcus_phage	1.4e-15	41.3
WP_004151006.1\|1248332_1249376_-\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	3.1e-172	85.6
WP_019405037.1\|1249375_1251139_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	91.8
WP_004151004.1\|1251279_1252113_+\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	4.4e-100	77.6
WP_004151003.1\|1252129_1253182_+\|capsid	phage major capsid protein, P2 family	A0A1S6KZZ3	Salmonella_phage	6.8e-175	91.0
WP_004134644.1\|1253185_1253839_+\|terminase	terminase endonuclease subunit	A0A1S6KZX1	Salmonella_phage	1.9e-90	80.0
WP_004151002.1\|1253934_1254399_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	1.5e-73	85.7
WP_004151001.1\|1254398_1254602_+\|tail	tail protein X	E5G6M9	Salmonella_phage	9.8e-30	89.6
WP_004134639.1\|1254605_1254821_+	hypothetical protein	E5G6N0	Salmonella_phage	6.1e-30	88.7
WP_004151000.1\|1254801_1255311_+	lysozyme	E5G6N1	Salmonella_phage	1.6e-81	85.2
WP_004150999.1\|1255315_1255699_+	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	1.9e-18	45.4
WP_004150998.1\|1255695_1256124_+\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	7.1e-54	82.5
WP_072093160.1\|1256098_1256257_+	hypothetical protein	A0A1S6KZX6	Salmonella_phage	9.0e-15	75.0
WP_004150997.1\|1256219_1256642_+\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	8.2e-63	83.2
WP_004150996.1\|1256634_1257081_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	2.5e-54	72.3
WP_004150995.1\|1257103_1257970_-	hypothetical protein	NA	NA	NA	NA
WP_004150994.1\|1258064_1258637_+\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	1.4e-76	70.8
WP_004150993.1\|1258633_1258996_+	GPW/gp25 family protein	A0A1S6KZZ4	Salmonella_phage	8.4e-48	85.6
WP_004150992.1\|1258982_1259891_+\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	1.9e-109	68.9
WP_004152935.1\|1259883_1260555_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	3.2e-61	58.9
WP_004150990.1\|1260556_1262506_+	CotH kinase family protein	Q6QI97	Burkholderia_phage	1.0e-06	38.9
WP_004200602.1\|1262515_1263634_+	hypothetical protein	A0A248XD67	Klebsiella_phage	4.4e-55	38.0
WP_004150988.1\|1263685_1264759_+\|tail	phage tail protein	A0A1S6KZZ8	Salmonella_phage	6.6e-40	53.6
WP_004150987.1\|1264907_1266080_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	3.4e-207	91.5
WP_004150986.1\|1266089_1266605_+\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	1.4e-80	84.2
WP_004150985.1\|1266657_1266957_+\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	8.2e-33	78.0
WP_002896220.1\|1266971_1267091_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.2e-13	87.2
WP_072093161.1\|1267317_1269714_+\|tail	phage tail tape measure protein	E5FFG5	Burkholderia_phage	8.1e-107	44.5
WP_004150983.1\|1269710_1270196_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	5.2e-61	80.1
WP_004150982.1\|1270192_1271287_+	phage late control D family protein	E5G6Q3	Salmonella_phage	2.4e-170	83.6
WP_004150981.1\|1271353_1271572_+	ogr/Delta-like zinc finger family protein	Q53ZE7	Salmonella_virus	1.9e-26	72.2
WP_004150980.1\|1271599_1271977_-	hypothetical protein	NA	NA	NA	NA
WP_002914164.1\|1272580_1273063_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	2.3e-29	47.4
1272072:1272118	attR	NA	NA	NA	NA
WP_004188817.1\|1273173_1273650_+	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA
WP_002914161.1\|1273639_1273930_+	RnfH family protein	NA	NA	NA	NA
WP_002914160.1\|1273996_1274338_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
WP_002914159.1\|1274485_1276147_-	DNA repair protein RecN	NA	NA	NA	NA
WP_002914158.1\|1276233_1277112_-	NAD(+) kinase	NA	NA	NA	NA
WP_002914155.1\|1277236_1277827_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
WP_004149392.1\|1277946_1279233_-	HlyC/CorC family transporter	NA	NA	NA	NA
WP_002914153.1\|1279252_1280044_-	inner membrane protein YpjD	NA	NA	NA	NA
WP_002914152.1\|1280207_1281572_+	signal recognition particle protein	NA	NA	NA	NA
WP_002914149.1\|1281831_1282080_+	30S ribosomal protein S16	NA	NA	NA	NA
WP_004150977.1\|1282098_1282647_+	ribosome maturation factor RimM	NA	NA	NA	NA
WP_002914147.1\|1282678_1283446_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA

DBSCAN-SWA_3

1386304 : 1431007

Salmonella_phage(44.9%)

tail,integrase,capsid,terminase,holin

attL 1388868:1388882|attR 1400049:1400063

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004151980.1\|1386304_1387771_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	1.2e-87	38.7
WP_004151979.1\|1387838_1389416_+	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
1388868:1388882	attL	NA	NA	NA	NA
WP_004152549.1\|1389608_1390859_+\|integrase	tyrosine-type recombinase/integrase	A0A1X9TCT6	Enterobacter_phage	1.4e-206	85.3
WP_004152548.1\|1390875_1391067_-	hypothetical protein	NA	NA	NA	NA
WP_004152547.1\|1391063_1391246_-	hypothetical protein	NA	NA	NA	NA
WP_004152546.1\|1391242_1391836_-	adenine methylase	T1SA14	Salmonella_phage	4.3e-110	92.4
WP_004152545.1\|1391832_1391991_-	DUF1317 family protein	T1SAR0	Salmonella_phage	1.9e-17	78.8
WP_004153052.1\|1391983_1392277_-	PerC family transcriptional regulator	T1S9J5	Salmonella_phage	8.9e-32	71.1
WP_004152543.1\|1392386_1392635_-	AlpA family phage regulatory protein	A0A0F6TJ45	Escherichia_coli_O157_typing_phage	1.1e-27	69.5
WP_004152542.1\|1392686_1393709_-	recombination protein RecT	Q858E1	Salmonella_phage	2.4e-180	95.3
WP_004152541.1\|1393718_1394618_-	YqaJ viral recombinase family protein	Q858E0	Salmonella_phage	1.5e-159	93.0
WP_004164029.1\|1394614_1394914_-	hypothetical protein	A0A0F6R7M4	Escherichia_coli_O157_typing_phage	2.1e-20	54.5
WP_004164037.1\|1394910_1395060_-	hypothetical protein	G9L6A5	Escherichia_phage	7.9e-13	84.2
WP_004152539.1\|1395280_1395862_-	helix-turn-helix transcriptional regulator	Q858D7	Salmonella_phage	1.9e-65	64.8
WP_004152538.1\|1396015_1396249_+	hypothetical protein	T1SAR5	Salmonella_phage	9.2e-24	66.2
WP_004152537.1\|1396396_1396606_+	hypothetical protein	A0A193GYW4	Enterobacter_phage	1.8e-26	78.3
WP_004152536.1\|1396605_1397373_+	primosomal protein	A0A193GZ86	Enterobacter_phage	3.4e-139	91.0
WP_004152535.1\|1397369_1398155_+	replication protein	A0A193GYX1	Enterobacter_phage	8.2e-133	87.4
WP_004152534.1\|1398274_1398622_+	DUF1064 domain-containing protein	A0A0F6R8N5	Escherichia_coli_O157_typing_phage	5.0e-50	82.6
WP_004152532.1\|1398814_1399225_+	hypothetical protein	A0A2P1MXC5	Escherichia_phage	3.1e-14	42.2
WP_004152531.1\|1399208_1399400_+	hypothetical protein	NA	NA	NA	NA
WP_004152530.1\|1399396_1399822_+	hypothetical protein	NA	NA	NA	NA
WP_004152529.1\|1399818_1400562_+	hypothetical protein	A6N3G8	Burkholderia_virus	1.5e-19	59.5
1400049:1400063	attR	NA	NA	NA	NA
WP_004152528.1\|1400561_1400732_+	hypothetical protein	A0A2R2Z308	Escherichia_phage	2.5e-15	69.6
WP_004141386.1\|1400732_1400945_+	hypothetical protein	A0A0F6TJE4	Escherichia_coli_O157_typing_phage	8.1e-11	45.5
WP_004152527.1\|1400941_1401610_+	DUF551 domain-containing protein	Q6UAT8	Klebsiella_phage	1.5e-05	52.5
WP_004152526.1\|1401602_1401842_+	hypothetical protein	G8C7S3	Escherichia_phage	4.6e-10	48.0
WP_004152525.1\|1401841_1402180_+	hypothetical protein	A0A193GYX4	Enterobacter_phage	4.7e-45	80.0
WP_004152524.1\|1402254_1402512_+	hypothetical protein	NA	NA	NA	NA
WP_004152523.1\|1402589_1403174_+\|terminase	terminase small subunit	T1SBI8	Salmonella_phage	2.4e-89	88.1
WP_004164044.1\|1403170_1404646_+	hypothetical protein	Q858H3	Salmonella_phage	1.9e-279	92.9
WP_004152473.1\|1404689_1405211_-	DUF2829 domain-containing protein	A0A1B0VMG3	Pseudomonas_phage	7.8e-47	55.2
WP_004152472.1\|1405916_1406120_+	hypothetical protein	NA	NA	NA	NA
WP_004152471.1\|1406123_1407803_+\|tail	tail protein	T1S9Z7	Salmonella_phage	3.4e-192	58.9
WP_004152470.1\|1407799_1408105_+	hypothetical protein	Q2A090	Sodalis_phage	1.1e-16	51.3
WP_019404949.1\|1408107_1408785_+	peptidase	T1SAP9	Salmonella_phage	2.0e-50	63.6
WP_004152467.1\|1408797_1409805_+\|capsid	phage capsid protein	T1S9H9	Salmonella_phage	2.7e-181	92.5
WP_004152466.1\|1409814_1410207_+	hypothetical protein	T1SA71	Salmonella_phage	1.5e-55	89.9
WP_004152465.1\|1410199_1410478_+	hypothetical protein	T1SA01	Salmonella_phage	6.7e-21	58.9
WP_004153043.1\|1410526_1411138_+	hypothetical protein	T1SAQ2	Salmonella_phage	1.2e-46	48.8
WP_004152463.1\|1411137_1413615_+	hypothetical protein	G9L6D0	Escherichia_phage	3.6e-267	56.5
WP_004152462.1\|1413616_1414087_+	hypothetical protein	Q858G2	Salmonella_phage	7.3e-44	55.3
WP_004152461.1\|1414079_1414577_+	hypothetical protein	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	5.7e-23	40.5
WP_004152460.1\|1414589_1417334_+	hypothetical protein	A0A193GYI3	Enterobacter_phage	9.1e-94	39.2
WP_004152459.1\|1417333_1420723_+	hypothetical protein	G9L6D4	Escherichia_phage	6.3e-121	42.0
WP_004152458.1\|1420732_1421347_+	hypothetical protein	NA	NA	NA	NA
WP_004152457.1\|1421621_1422020_-	hypothetical protein	NA	NA	NA	NA
WP_004152456.1\|1422024_1422207_-	hypothetical protein	NA	NA	NA	NA
WP_004152455.1\|1422397_1423093_-	hypothetical protein	A0A193GYJ9	Enterobacter_phage	4.4e-61	52.7
WP_157833602.1\|1423176_1423365_-	ash family protein	NA	NA	NA	NA
WP_004152454.1\|1423473_1423671_-	type II toxin-antitoxin system HicA family toxin	A0A0M4RCZ9	Salmonella_phage	2.0e-19	69.8
WP_004152453.1\|1423674_1423932_-	DUF1902 domain-containing protein	A0A0M4R2Z9	Salmonella_phage	2.3e-12	54.1
WP_004152452.1\|1424022_1424319_-	hypothetical protein	T1SA06	Salmonella_phage	6.2e-25	65.5
WP_004221284.1\|1424470_1426840_+\|tail	phage tail fibers	A0A2H5BN49	Klebsiella_phage	9.1e-268	79.5
WP_004229092.1\|1426848_1427001_+	hypothetical protein	A0A2H5BN82	Klebsiella_phage	1.9e-06	54.3
WP_004146394.1\|1427124_1427529_+	membrane protein	T1SA79	Salmonella_phage	9.3e-56	84.1
WP_004146393.1\|1427515_1427821_+\|holin	phage holin family protein	A0A193GYK3	Enterobacter_phage	2.7e-39	82.4
WP_004152706.1\|1427810_1428440_+	glycoside hydrolase family 19 protein	Q858F0	Salmonella_phage	3.1e-90	76.4
WP_004152707.1\|1428436_1428919_+	DUF2514 domain-containing protein	Q858E9	Salmonella_phage	3.0e-61	80.6
WP_004152009.1\|1429138_1431007_-	sulfatase-like hydrolase/transferase	A0A2P0VMN7	Tetraselmis_virus	2.6e-07	22.6

DBSCAN-SWA_4

1759737 : 1766644

Planktothrix_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004175147.1\|1759737_1760601_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5
WP_002912638.1\|1760611_1761385_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.5e-25	36.3
WP_004151134.1\|1761627_1762524_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
WP_002912635.1\|1762766_1764128_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	2.5e-206	94.5
WP_002912634.1\|1764446_1765169_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	6.4e-31	33.2
WP_004151135.1\|1765165_1766644_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	1.1e-29	28.3

DBSCAN-SWA_5

1804277 : 1811902

Enterobacteria_phage(28.57%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152488.1\|1804277_1805684_+	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	4.7e-38	28.7
WP_004152487.1\|1805908_1806973_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	3.4e-105	55.0
WP_004152486.1\|1806999_1807869_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	9.8e-111	67.0
WP_004152485.1\|1807900_1808791_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	2.8e-28	33.6
WP_004152484.1\|1808805_1809360_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	3.8e-52	58.2
WP_004152483.1\|1809540_1810707_+	UDP-glucose 6-dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	4.1e-112	54.7
WP_004152482.1\|1810900_1811902_+	NAD-dependent epimerase	E3T4Y8	Cafeteria_roenbergensis_virus	1.2e-30	28.6

DBSCAN-SWA_6

2053843 : 2110330

Staphylococcus_phage(16.67%)

protease,transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002910830.1\|2053843_2054590_+\|protease	proteasome-type protease	NA	NA	NA	NA
WP_002910809.1\|2055028_2056015_+	fatty acid desaturase	NA	NA	NA	NA
WP_004151439.1\|2056007_2056808_+	PhnD/SsuA/transferrin family substrate-binding protein	NA	NA	NA	NA
WP_002910767.1\|2056794_2056968_-	hypothetical protein	NA	NA	NA	NA
WP_004219597.1\|2057265_2057409_-	hypothetical protein	NA	NA	NA	NA
WP_002910764.1\|2057585_2058527_+	transcriptional regulator TdcA	NA	NA	NA	NA
WP_002910762.1\|2058620_2059610_+	bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA	NA	NA	NA
WP_004145486.1\|2059635_2060967_+	threonine/serine transporter TdcC	NA	NA	NA	NA
WP_002910759.1\|2060994_2062203_+	propionate kinase	NA	NA	NA	NA
WP_004152312.1\|2062231_2064526_+	formate C-acetyltransferase	A0A2P0VNR5	Tetraselmis_virus	2.3e-159	41.8
WP_004225356.1\|2064577_2064724_-	hypothetical protein	NA	NA	NA	NA
WP_002910729.1\|2065013_2066072_+	branched-chain amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002910727.1\|2066181_2067096_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_002910725.1\|2067105_2068383_+	high-affinity branched-chain amino acid ABC transporter permease LivM	NA	NA	NA	NA
WP_002910722.1\|2068379_2069255_+	ATP-binding cassette domain-containing protein	A0A285PWH2	Cedratvirus	1.5e-10	25.5
WP_002910721.1\|2069251_2069971_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.5e-11	26.0
WP_002910720.1\|2069976_2070870_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002910719.1\|2071153_2072797_+	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	9.8e-136	50.4
WP_002910717.1\|2072846_2073323_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_002910715.1\|2073421_2074348_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004152313.1\|2074651_2075947_+	MFS transporter	Q6JIH2	Burkholderia_virus	1.3e-61	36.8
WP_004899032.1\|2075958_2076768_+	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_004152315.1\|2076742_2077642_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_002910657.1\|2077751_2078234_-	cold shock domain-containing protein	NA	NA	NA	NA
WP_002910654.1\|2078424_2079123_+	RluA family pseudouridine synthase	A0A2H4UV25	Bodo_saltans_virus	2.6e-05	27.2
WP_002910652.1\|2079148_2079688_-	DUF2058 domain-containing protein	NA	NA	NA	NA
WP_002910650.1\|2079802_2080132_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA
WP_002910645.1\|2080700_2082041_+\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_004152316.1\|2082037_2082691_+	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_004152317.1\|2082694_2084392_+	OmpA family protein	NA	NA	NA	NA
WP_004152319.1\|2087355_2088711_+	S-type pyocin domain-containing protein	NA	NA	NA	NA
WP_002910593.1\|2088711_2089221_+	hypothetical protein	NA	NA	NA	NA
WP_002910591.1\|2089217_2089724_+	hypothetical protein	NA	NA	NA	NA
WP_002910589.1\|2089818_2089971_+	hypothetical protein	NA	NA	NA	NA
WP_002910586.1\|2089960_2090470_+	hypothetical protein	NA	NA	NA	NA
WP_022644641.1\|2092075_2093044_+\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	6.5e-180	96.3
WP_004199326.1\|2093185_2093368_+	hypothetical protein	NA	NA	NA	NA
WP_004153085.1\|2093364_2093694_+	hypothetical protein	NA	NA	NA	NA
WP_002910551.1\|2093690_2094197_+	hypothetical protein	NA	NA	NA	NA
WP_002910547.1\|2095712_2096018_+	hypothetical protein	NA	NA	NA	NA
WP_002910544.1\|2096039_2096933_+	SUMF1/EgtB/PvdO family nonheme iron enzyme	A0A7H6	Microcystis_virus	6.7e-14	30.5
WP_004217423.1\|2096978_2097095_+	hypothetical protein	NA	NA	NA	NA
WP_004152633.1\|2097116_2098010_+	SUMF1/EgtB/PvdO family nonheme iron enzyme	A0A075BSL8	Microcystis_phage	1.7e-12	27.3
WP_038435084.1\|2098035_2098164_+	hypothetical protein	NA	NA	NA	NA
WP_002910539.1\|2098185_2099079_+	SUMF1/EgtB/PvdO family nonheme iron enzyme	A0A075BSL8	Microcystis_phage	2.8e-12	27.1
WP_004152632.1\|2099254_2100145_+	SUMF1/EgtB/PvdO family nonheme iron enzyme	A0A7H6	Microcystis_virus	4.1e-11	29.8
WP_000019473.1\|2100481_2101462_+\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
WP_171815252.1\|2101519_2101822_+	hypothetical protein	NA	NA	NA	NA
WP_072093174.1\|2102082_2102268_+	hypothetical protein	NA	NA	NA	NA
WP_002910497.1\|2102565_2102832_+	PAAR domain-containing protein	NA	NA	NA	NA
WP_004198077.1\|2102835_2103993_+	hypothetical protein	NA	NA	NA	NA
WP_004152262.1\|2103976_2107387_+	type VI secretion protein VasK	NA	NA	NA	NA
WP_002910495.1\|2107520_2109284_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004152910.1\|2109313_2110330_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA

DBSCAN-SWA_7

2753294 : 2764169

Escherichia_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004151613.1\|2753294_2756402_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.6
WP_004151612.1\|2756456_2757722_+	MFS transporter	NA	NA	NA	NA
WP_001620097.1\|2757752_2758841_-	AAA family ATPase	A0A077SLJ9	Escherichia_phage	8.0e-211	100.0
WP_002904006.1\|2758927_2759188_-	hypothetical protein	A0A077SK33	Escherichia_phage	3.5e-40	97.7
WP_004176269.1\|2759485_2760346_+	class A broad-spectrum beta-lactamase SHV-11	A0A077SL40	Escherichia_phage	2.2e-155	99.3
WP_002210513.1\|2760366_2761128_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
WP_002903955.1\|2761389_2762292_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
WP_002210516.1\|2763548_2764169_+	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_8

2958634 : 3152346

212

Klebsiella_phage(22.73%)

protease,tail,integrase,transposase,plate,terminase,holin

attL 2984204:2984221|attR 3138838:3138855

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002902268.1\|2958634_2959720_-\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_004151598.1\|2959683_2961438_-\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_004151599.1\|2963109_2966535_-	type VI secretion protein VasK	NA	NA	NA	NA
WP_002902254.1\|2966518_2967658_-	hypothetical protein	NA	NA	NA	NA
WP_002902252.1\|2967654_2967912_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_004151601.1\|2967956_2970374_-	DUF2235 domain-containing protein	NA	NA	NA	NA
WP_002902180.1\|2970361_2970892_-	T6SS immunity phospholipase A1-binding lipoprotein Tli1-KP	NA	NA	NA	NA
WP_002902178.1\|2970959_2971490_-	T6SS immunity phospholipase A1-binding lipoprotein Tli1-KP	NA	NA	NA	NA
WP_002902176.1\|2971558_2972089_-	T6SS immunity phospholipase A1-binding lipoprotein Tli1-KP	NA	NA	NA	NA
WP_002902174.1\|2972156_2972687_-	T6SS immunity phospholipase A1-binding lipoprotein Tli1-KP	NA	NA	NA	NA
WP_002902172.1\|2972755_2973286_-	T6SS immunity phospholipase A1-binding lipoprotein Tli1-KP	NA	NA	NA	NA
WP_002902169.1\|2973349_2974129_-	DUF4123 domain-containing protein	NA	NA	NA	NA
WP_004228410.1\|2974129_2976499_-	type VI secretion system tip protein VgrG	A0A2H4JCD4	uncultured_Caudovirales_phage	9.1e-18	33.8
WP_002902163.1\|2976500_2979155_-	type VI secretion system ATPase TssH	K4FB40	Cronobacter_phage	2.5e-96	33.4
WP_002902160.1\|2979419_2979911_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
WP_004151602.1\|2979915_2981622_-	OmpA family protein	NA	NA	NA	NA
WP_004151603.1\|2981618_2982308_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA
WP_004218490.1\|2982304_2983648_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_002902148.1\|2983657_2985202_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
2984204:2984221	attL	NA	NA	NA	NA
WP_002902144.1\|2985244_2985736_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_002902136.1\|2986581_2986830_+	DinI-like family protein	S5MQI1	Escherichia_phage	1.4e-25	70.4
WP_002902133.1\|2987052_2987337_-	hypothetical protein	NA	NA	NA	NA
WP_002902131.1\|2987441_2987651_-	hypothetical protein	NA	NA	NA	NA
WP_002902128.1\|2987647_2988379_-	hypothetical protein	NA	NA	NA	NA
WP_004218487.1\|2988389_2989118_-	hypothetical protein	NA	NA	NA	NA
WP_004152577.1\|2991468_2991666_-	hypothetical protein	NA	NA	NA	NA
WP_004152576.1\|2991665_2992532_-	hypothetical protein	A0A2H4IYR0	uncultured_Caudovirales_phage	1.9e-34	64.5
WP_004152575.1\|2992531_2993305_-	DUF2612 domain-containing protein	A0A2H4J1A9	uncultured_Caudovirales_phage	2.8e-77	54.4
WP_004152574.1\|2993301_2994498_-\|plate	baseplate J/gp47 family protein	A0A0M4RD32	Salmonella_phage	3.9e-158	72.9
WP_004152573.1\|2994497_2994851_-	hypothetical protein	A0A2H4J629	uncultured_Caudovirales_phage	2.3e-50	80.3
WP_004152572.1\|2994852_2995506_-	hypothetical protein	A0A2H4J8H6	uncultured_Caudovirales_phage	1.0e-59	63.5
WP_004152571.1\|2995559_2996126_-	hypothetical protein	NA	NA	NA	NA
WP_004199301.1\|2996168_2996351_-	hypothetical protein	NA	NA	NA	NA
WP_004152570.1\|2996400_2996742_-	hypothetical protein	A0A2H4J1A5	uncultured_Caudovirales_phage	1.8e-23	46.6
WP_004152569.1\|2996741_2997764_-	hypothetical protein	A0A2H4J1B2	uncultured_Caudovirales_phage	9.2e-100	54.2
WP_004217362.1\|2997766_2997994_-	hypothetical protein	A0A2H4J495	uncultured_Caudovirales_phage	4.6e-20	56.0
WP_004152567.1\|2998069_2998669_-	hypothetical protein	A0A2H4J1B3	uncultured_Caudovirales_phage	9.9e-54	57.6
WP_004152566.1\|2998668_3000672_-	lytic transglycosylase domain-containing protein	A0A2H4J9N7	uncultured_Caudovirales_phage	1.2e-247	63.6
WP_004152565.1\|3000661_3000814_-	hypothetical protein	A0A2H4J1A2	uncultured_Caudovirales_phage	7.6e-19	88.0
WP_004152564.1\|3000849_3001275_-	hypothetical protein	A0A2H4J2V6	uncultured_Caudovirales_phage	2.6e-40	63.4
WP_085955245.1\|3001601_3002793_+\|transposase	IS3-like element ISKpn18 family transposase	U5P429	Shigella_phage	3.5e-50	43.5
WP_004152178.1\|3002734_3003025_-	DUF3277 family protein	A0A2H4J619	uncultured_Caudovirales_phage	2.6e-23	85.5
WP_004152177.1\|3003035_3004181_-	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	6.3e-166	76.9
WP_004152176.1\|3004184_3004625_-	hypothetical protein	A0A2H4J1A0	uncultured_Caudovirales_phage	1.6e-40	51.7
WP_001116156.1\|3004719_3005106_-	hypothetical protein	A0A2H4J1A4	uncultured_Caudovirales_phage	1.1e-48	78.2
WP_000834982.1\|3005105_3005612_-	hypothetical protein	NA	NA	NA	NA
WP_000113538.1\|3005608_3006028_-	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	3.3e-40	60.7
WP_000725700.1\|3005996_3006278_-	hypothetical protein	NA	NA	NA	NA
WP_001132269.1\|3006317_3007259_-	DUF2184 domain-containing protein	A0A2H4J191	uncultured_Caudovirales_phage	1.7e-137	77.1
WP_000528476.1\|3007270_3007765_-	hypothetical protein	A0A2H4JHM9	uncultured_Caudovirales_phage	4.2e-50	62.7
WP_087749906.1\|3007768_3008971_-	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	5.9e-106	54.1
WP_004152174.1\|3009022_3009571_-	hypothetical protein	A0A0M4REK0	Salmonella_phage	3.0e-49	56.3
WP_004152173.1\|3009626_3011078_-	DUF1073 domain-containing protein	A0A0M4S6U1	Salmonella_phage	3.8e-192	68.8
WP_004152172.1\|3011315_3012716_-\|terminase	PBSX family phage terminase large subunit	A0A077KAW0	Edwardsiella_phage	9.4e-188	69.0
WP_004218030.1\|3012666_3013155_-	hypothetical protein	NA	NA	NA	NA
WP_004152170.1\|3013520_3013841_-	hypothetical protein	NA	NA	NA	NA
WP_004153952.1\|3014075_3014465_-	lipase chaperone	A0A192Y6H8	Salmonella_phage	9.4e-21	49.2
WP_004152169.1\|3014461_3014992_-	lysozyme	K7PLY1	Enterobacteria_phage	2.7e-79	77.1
WP_004146526.1\|3014994_3015243_-\|holin	class II holin family protein	NA	NA	NA	NA
WP_004152167.1\|3015648_3016431_-	antitermination protein	F1C595	Cronobacter_phage	7.2e-113	76.8
WP_004198239.1\|3016427_3016904_-	hypothetical protein	A0A286N2Q1	Klebsiella_phage	1.8e-90	100.0
WP_004198233.1\|3016900_3017863_-	toprim domain-containing protein	A0A286N2Q0	Klebsiella_phage	4.8e-183	99.4
WP_004198228.1\|3017864_3019523_-	DEAD/DEAH box helicase	A0A286N2P9	Klebsiella_phage	0.0e+00	96.0
WP_004152162.1\|3020099_3020321_-	helix-turn-helix transcriptional regulator	A0A286S2C1	Klebsiella_phage	3.0e-32	100.0
WP_004152161.1\|3020418_3021087_+	LexA family transcriptional regulator	A0A286S2B2	Klebsiella_phage	2.4e-125	99.5
WP_004152160.1\|3021257_3021572_+	hypothetical protein	A0A286S1T9	Klebsiella_phage	1.0e-49	100.0
WP_004152159.1\|3021564_3021753_+	hypothetical protein	A0A286S1P8	Klebsiella_phage	4.6e-26	100.0
WP_004152158.1\|3021922_3022288_+	hypothetical protein	A0A286S1Q6	Klebsiella_phage	6.9e-58	99.2
WP_004152157.1\|3022280_3022535_+	hypothetical protein	A0A286SGR4	Klebsiella_phage	3.1e-41	97.6
WP_004177208.1\|3022506_3022725_+	hypothetical protein	A0A286S1P6	Klebsiella_phage	6.6e-32	98.6
WP_004152156.1\|3022721_3023147_+	hypothetical protein	A0A286S1S2	Klebsiella_phage	3.5e-53	77.9
WP_004152155.1\|3023143_3023338_+	hypothetical protein	NA	NA	NA	NA
WP_087749880.1\|3023334_3024162_+\|protease	serine protease	Q8W654	Enterobacteria_phage	2.1e-110	83.6
WP_004152153.1\|3024266_3024785_+	hypothetical protein	A0A286S1S7	Klebsiella_phage	1.7e-94	98.8
WP_004154298.1\|3024790_3025501_+	Rha family transcriptional regulator	A0A286S260	Klebsiella_phage	2.1e-111	88.3
WP_004152151.1\|3025490_3025715_+	hypothetical protein	A0A286S2B3	Klebsiella_phage	3.1e-29	89.2
WP_004152150.1\|3025711_3025924_+	hypothetical protein	A0A286S2B6	Klebsiella_phage	3.4e-33	98.6
WP_014343018.1\|3026166_3026400_+	hypothetical protein	NA	NA	NA	NA
WP_004198245.1\|3026472_3026619_+	hypothetical protein	A0A1B5FPC2	Escherichia_phage	2.9e-15	70.8
WP_004152148.1\|3026578_3026821_+	hypothetical protein	A0A0M4RTZ2	Salmonella_phage	2.2e-20	73.8
WP_004152147.1\|3026801_3027983_-\|integrase	site-specific integrase	A0A0M4QX09	Salmonella_phage	5.6e-202	84.2
WP_016197745.1\|3028179_3028728_+	DJ-1/PfpI family protein	NA	NA	NA	NA
WP_004152145.1\|3028926_3030459_-	HD domain-containing protein	A0A1B1ISR1	uncultured_Mediterranean_phage	1.1e-21	30.0
WP_004152144.1\|3030675_3031437_-	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	2.4e-20	32.5
WP_004152143.1\|3031545_3032460_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004176439.1\|3032760_3032949_+	hypothetical protein	NA	NA	NA	NA
WP_004152141.1\|3033495_3034365_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	5.7e-50	42.1
WP_004218007.1\|3034443_3035646_-	MFS transporter	NA	NA	NA	NA
WP_004152139.1\|3035718_3036855_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_004152138.1\|3037027_3037912_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004152137.1\|3038036_3038870_-	hypothetical protein	NA	NA	NA	NA
WP_004152136.1\|3039100_3039487_+	glyoxalase/bleomycin resistance/dioxygenase family protein	NA	NA	NA	NA
WP_004152135.1\|3039654_3041271_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004148146.1\|3041267_3041384_-	hypothetical protein	NA	NA	NA	NA
WP_004152134.1\|3041456_3042164_+	murein tripeptide amidase MpaA	NA	NA	NA	NA
WP_004152133.1\|3042160_3043126_-	L-Ala-D/L-Glu epimerase	NA	NA	NA	NA
WP_004152131.1\|3043228_3043735_+	thiol peroxidase	NA	NA	NA	NA
WP_004152128.1\|3043805_3044858_-	AbrB family transcriptional regulator	NA	NA	NA	NA
WP_002901979.1\|3044959_3046501_-	transcriptional regulator TyrR	NA	NA	NA	NA
WP_002901977.1\|3046673_3047987_-	6-phospho-beta-glucosidase	NA	NA	NA	NA
WP_071531198.1\|3048118_3049000_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004152127.1\|3049089_3050151_-	TIGR01620 family protein	NA	NA	NA	NA
WP_002901917.1\|3050147_3051545_-	YcjX family protein	NA	NA	NA	NA
WP_002901915.1\|3051647_3051866_-	phage shock protein PspD	NA	NA	NA	NA
WP_002901913.1\|3051894_3052254_-	envelope stress response membrane protein PspC	NA	NA	NA	NA
WP_002901911.1\|3052253_3052478_-	envelope stress response membrane protein PspB	NA	NA	NA	NA
WP_002901908.1\|3052533_3053202_-	phage shock protein PspA	NA	NA	NA	NA
WP_004148137.1\|3053354_3054344_+	phage shock protein operon transcriptional activator	NA	NA	NA	NA
WP_002901901.1\|3054334_3055726_-	MFS transporter	NA	NA	NA	NA
WP_002901900.1\|3055751_3056921_-	amidohydrolase	NA	NA	NA	NA
WP_004152126.1\|3057092_3059402_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_004171423.1\|3059380_3060211_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_004231410.1\|3060318_3061227_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_002901817.1\|3061560_3063204_+	peptide ABC transporter substrate-binding protein SapA	NA	NA	NA	NA
WP_002901816.1\|3063200_3064166_+	peptide ABC transporter permease SapB	NA	NA	NA	NA
WP_002901815.1\|3064370_3065042_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	4.5e-79	59.6
WP_071531199.1\|3065228_3066056_+	FRG domain-containing protein	A0A1S6KZX9	Salmonella_phage	8.4e-19	30.2
WP_002901813.1\|3066131_3067397_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	9.6e-208	82.7
WP_002901812.1\|3067398_3067818_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.4e-35	57.5
WP_004178082.1\|3067897_3069385_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
WP_001067855.1\|3071294_3071999_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001389365.1\|3072175_3072940_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_000376623.1\|3073446_3073947_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000259031.1\|3074074_3074914_-	sulfonamide-resistant dihydropteroate synthase Sul1	NA	NA	NA	NA
WP_000679427.1\|3074907_3075255_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_001261740.1\|3075418_3076210_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
WP_001067855.1\|3077205_3077910_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_004152703.1\|3078158_3080102_+	hypothetical protein	A0A286S1P0	Klebsiella_phage	1.1e-37	69.8
WP_004152702.1\|3080343_3080943_+	hypothetical protein	NA	NA	NA	NA
WP_004152700.1\|3081167_3081899_-	hypothetical protein	NA	NA	NA	NA
WP_024940942.1\|3081902_3082637_-	hypothetical protein	NA	NA	NA	NA
WP_004152652.1\|3084933_3088002_-	hypothetical protein	A0A286S259	Klebsiella_phage	0.0e+00	97.5
WP_004152651.1\|3087998_3088379_-	hypothetical protein	A0A286S2A6	Klebsiella_phage	1.8e-72	99.2
WP_004152650.1\|3088388_3088871_-	DUF1833 family protein	A0A286S2B1	Klebsiella_phage	1.7e-80	94.4
WP_004152649.1\|3089051_3089516_-	hypothetical protein	A0A286S298	Klebsiella_phage	6.7e-58	67.8
WP_004152648.1\|3089830_3090166_-	hypothetical protein	NA	NA	NA	NA
WP_000019473.1\|3090356_3091337_-\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
WP_004217331.1\|3091449_3094347_-\|tail	phage tail length tape measure family protein	A0A2H4J107	uncultured_Caudovirales_phage	1.6e-104	32.7
WP_099119318.1\|3094608_3094800_-	hypothetical protein	S4TR42	Salmonella_phage	7.8e-05	78.3
WP_004217333.1\|3095024_3095381_-	hypothetical protein	A0A1V0E5P9	Salmonella_phage	1.1e-44	75.0
WP_016831940.1\|3095457_3095664_-	hypothetical protein	NA	NA	NA	NA
WP_004226994.1\|3095801_3096284_-	hypothetical protein	NA	NA	NA	NA
WP_004217341.1\|3096337_3097510_-	Ig domain-containing protein	A0A0D4DBN5	Acinetobacter_phage	1.2e-23	27.0
WP_004190640.1\|3097533_3097926_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
WP_004217343.1\|3097922_3098474_-	hypothetical protein	G8C7Q1	Escherichia_phage	1.3e-28	39.9
WP_004217344.1\|3098475_3098859_-	hypothetical protein	A0A0S2SYG4	Pseudomonas_phage	7.1e-21	45.2
WP_004190646.1\|3098845_3099079_-	hypothetical protein	A0A2H4J0Y9	uncultured_Caudovirales_phage	5.8e-10	47.1
WP_004217346.1\|3099088_3099343_-	hypothetical protein	J9Q7U0	Salmonella_phage	1.0e-20	52.4
WP_004217348.1\|3099344_3099740_-	hypothetical protein	A0A1B1P9F2	Acinetobacter_phage	4.3e-13	38.5
WP_142689607.1\|3099780_3100053_-	Ig-like domain-containing protein	NA	NA	NA	NA
WP_004190653.1\|3100061_3101015_-	Ig domain-containing protein	A0A1B0VMF8	Pseudomonas_phage	5.0e-132	74.4
WP_004217351.1\|3101025_3101811_-	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	1.0e-66	63.9
WP_004227000.1\|3101924_3102101_-	hypothetical protein	NA	NA	NA	NA
WP_019405022.1\|3102341_3103454_-	hypothetical protein	I6PD76	Cronobacter_phage	5.6e-111	55.1
WP_004218551.1\|3103437_3104838_-	DUF4055 domain-containing protein	A0A1B0VMH0	Pseudomonas_phage	1.1e-127	53.5
WP_004190663.1\|3104837_3106145_-\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	3.6e-149	58.9
WP_004218556.1\|3106122_3107127_-\|terminase	terminase small subunit	Q5QF76	Pseudomonas_virus	1.5e-38	45.5
WP_004218558.1\|3107989_3108235_-	DUF2560 family protein	A0A286N2R1	Klebsiella_phage	4.6e-34	96.3
WP_004190672.1\|3109193_3109469_-	hypothetical protein	A0A286N2Q8	Klebsiella_phage	2.2e-08	72.5
WP_004190674.1\|3109465_3109810_-	hypothetical protein	A0A286N2Q7	Klebsiella_phage	2.0e-38	80.7
WP_004218565.1\|3109806_3110346_-	glycoside hydrolase family 108 protein	A0A286N2Q6	Klebsiella_phage	3.3e-101	98.9
WP_024940884.1\|3110342_3110642_-\|holin	phage holin family protein	A0A286N2Q5	Klebsiella_phage	4.5e-47	100.0
WP_022644626.1\|3111120_3112167_-\|transposase	IS481-like element ISKpn28 family transposase	A0A0M3LR35	Mannheimia_phage	1.3e-05	21.9
WP_004232548.1\|3112392_3113082_-	antiterminator-like protein	I6PDF8	Cronobacter_phage	2.1e-55	53.1
WP_004218534.1\|3113081_3113222_-	YlcG family protein	NA	NA	NA	NA
WP_004218533.1\|3113218_3113857_-	recombination protein NinG	H6WRY9	Salmonella_phage	3.2e-74	69.8
WP_004218532.1\|3113849_3114518_-	metallophosphoesterase	K7P6H8	Enterobacteria_phage	1.4e-104	78.7
WP_004243010.1\|3114514_3114682_-	NinE family protein	K7P7K0	Enterobacteria_phage	4.6e-09	62.5
WP_004218531.1\|3114662_3115130_-	recombination protein NinB	Q8VNP6	Enterobacteria_phage	3.4e-33	45.8
WP_004243011.1\|3115262_3115541_-	hypothetical protein	NA	NA	NA	NA
WP_004218530.1\|3115650_3116679_+	hypothetical protein	NA	NA	NA	NA
WP_004196831.1\|3116886_3117132_-	hypothetical protein	NA	NA	NA	NA
WP_004218528.1\|3117187_3117490_-	MarR family transcriptional regulator	NA	NA	NA	NA
WP_004201118.1\|3117486_3118335_-	ATP-binding protein	K7PLU3	Enterobacteria_phage	5.1e-88	60.1
WP_004201117.1\|3118331_3119192_-	replication protein	K7PGT1	Enterobacteria_phage	1.0e-59	53.3
WP_001548453.1\|3119277_3119499_-	hypothetical protein	G8EYH8	Enterobacteria_phage	6.9e-05	41.7
WP_004201115.1\|3119539_3119767_-	helix-turn-helix domain-containing protein	Q76H55	Enterobacteria_phage	1.4e-24	77.1
WP_004201113.1\|3119878_3120577_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	3.7e-108	84.1
WP_004201109.1\|3120864_3121941_+	ParA family protein	H2BD62	Pseudomonas_phage	9.1e-58	37.9
WP_004201108.1\|3122022_3122226_-	hypothetical protein	A0A192Y6Q5	Salmonella_phage	3.9e-18	71.6
WP_004219883.1\|3122536_3122662_+	hypothetical protein	NA	NA	NA	NA
WP_004135674.1\|3122654_3122849_+	hypothetical protein	NA	NA	NA	NA
WP_004201105.1\|3122937_3123222_+	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	1.1e-39	79.8
WP_004201103.1\|3123237_3124083_+	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	1.8e-69	59.2
WP_088224434.1\|3124079_3124367_+	hypothetical protein	NA	NA	NA	NA
WP_004201102.1\|3124368_3125049_+	YqaJ viral recombinase family protein	A0A0M3ULE0	Salmonella_phage	8.2e-121	91.2
WP_004151898.1\|3125045_3125474_+	hypothetical protein	M9NYX4	Enterobacteria_phage	7.5e-64	80.3
WP_004151899.1\|3125470_3126133_+	DNA methyltransferase	G8C7S6	Escherichia_phage	2.7e-105	84.6
WP_004151900.1\|3126340_3127558_-\|integrase	site-specific integrase	K7PGY1	Enterobacteria_phage	8.6e-121	51.9
WP_004151901.1\|3127704_3128595_+	peptide ABC transporter permease SapC	NA	NA	NA	NA
WP_004140266.1\|3128594_3129587_+	peptide ABC transporter ATP-binding protein SapD	G9BWD6	Planktothrix_phage	3.0e-07	27.2
WP_004140269.1\|3129588_3130398_+	peptide ABC transporter ATP-binding protein SapF	A0A2H4PQG7	Staphylococcus_phage	2.1e-14	28.9
WP_004151902.1\|3130442_3131822_-	cytosine permease	NA	NA	NA	NA
WP_004152967.1\|3132069_3132612_+	HutD family protein	NA	NA	NA	NA
WP_004140277.1\|3132810_3133599_+	enoyl-ACP reductase FabI	NA	NA	NA	NA
WP_004151905.1\|3133789_3134947_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_002901787.1\|3135028_3136963_+	exoribonuclease II	A0A2H4UVB7	Bodo_saltans_virus	7.0e-08	24.6
WP_002901786.1\|3137121_3137301_+	hypothetical protein	NA	NA	NA	NA
WP_002901785.1\|3137372_3138122_+	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_002901783.1\|3138397_3138616_+	osmotically-inducible lipoprotein OsmB	NA	NA	NA	NA
WP_002901782.1\|3138747_3139074_-	stress response translation initiation inhibitor YciH	NA	NA	NA	NA
3138838:3138855	attR	NA	NA	NA	NA
WP_004151907.1\|3139073_3139811_-	orotidine-5'-phosphate decarboxylase	NA	NA	NA	NA
WP_002901781.1\|3140002_3141172_-	lipopolysaccharide assembly protein LapB	NA	NA	NA	NA
WP_002901780.1\|3141178_3141487_-	LapA family protein	NA	NA	NA	NA
WP_002901779.1\|3141622_3142390_-	phosphatidylglycerophosphatase B	NA	NA	NA	NA
WP_002901778.1\|3142553_3143156_+	GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.2e-43	49.5
WP_002901777.1\|3143202_3145875_-	aconitate hydratase AcnA	NA	NA	NA	NA
WP_002901776.1\|3146263_3146431_-	YmiA family putative membrane protein	NA	NA	NA	NA
WP_002901772.1\|3146676_3147651_-	HTH-type transcriptional regulator CysB	NA	NA	NA	NA
WP_002901763.1\|3147996_3150594_-	type I DNA topoisomerase	A0A2K9L5F8	Tupanvirus	2.9e-89	35.6
WP_002901761.1\|3151000_3151252_+	YciN family protein	NA	NA	NA	NA
WP_002901758.1\|3151299_3152346_-\|protease	protease SohB	NA	NA	NA	NA

DBSCAN-SWA_9

3506689 : 3599035

Salmonella_phage(59.65%)

protease,tail,lysis,tRNA,integrase,capsid,portal,head,plate,terminase

attL 3562215:3562233|attR 3599110:3599128

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_002898139.1\|3506689_3507982_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	7.3e-94	44.7
WP_002898137.1\|3508072_3509416_-	replication-associated recombination protein RarA	G3MBE0	Bacillus_virus	7.3e-81	40.8
WP_002898132.1\|3509424_3510036_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_004150846.1\|3510158_3514412_-	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	5.2e-88	49.2
WP_000228469.1\|3514547_3515042_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_002898019.1\|3515574_3516543_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	3.2e-62	44.0
WP_002898017.1\|3516657_3518424_+	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	W8CYL7	Bacillus_phage	2.3e-21	25.9
WP_004150847.1\|3518424_3520146_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3
WP_002898014.1\|3520190_3520892_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|3521245_3521464_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_002896522.1\|3521584_3523864_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
WP_002896520.1\|3523894_3524212_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
WP_002896516.1\|3524537_3524759_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
WP_004150848.1\|3524835_3526776_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.9e-37	40.5
WP_002896440.1\|3526772_3527888_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7
WP_002896437.1\|3528034_3529693_-	ATP-dependent endonuclease	NA	NA	NA	NA
WP_002896434.1\|3530112_3530808_+	aquaporin Z	NA	NA	NA	NA
WP_004147773.1\|3530923_3531823_+	lysine exporter LysO family protein	NA	NA	NA	NA
WP_002896412.1\|3531966_3533619_+	hydroxylamine reductase	NA	NA	NA	NA
WP_002896410.1\|3533629_3534598_+	NADH oxidoreductase	NA	NA	NA	NA
WP_002896408.1\|3534809_3535244_-	DoxX family protein	NA	NA	NA	NA
WP_002896406.1\|3535395_3537114_+	ubiquinone-dependent pyruvate dehydrogenase	NA	NA	NA	NA
WP_002896404.1\|3537152_3538154_+	low-specificity L-threonine aldolase	NA	NA	NA	NA
WP_002896401.1\|3538164_3539607_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_002896399.1\|3539694_3540708_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
WP_002896397.1\|3540704_3541535_-	N-acetylmuramoyl-L-alanine amidase	A0A1B0UZW5	Roseobacter_phage	4.1e-05	31.6
WP_004150851.1\|3541566_3542706_-	GGDEF domain-containing protein	NA	NA	NA	NA
WP_002896394.1\|3543583_3544099_+	lipoprotein	NA	NA	NA	NA
WP_002896392.1\|3544325_3545054_+	arginine ABC transporter ATP-binding protein ArtP	G9BWD6	Planktothrix_phage	1.2e-29	37.1
WP_002896390.1\|3545074_3545806_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002896386.1\|3545812_3546529_+	arginine ABC transporter permease ArtQ	NA	NA	NA	NA
WP_004150852.1\|3546528_3547197_+	arginine ABC transporter permease ArtM	NA	NA	NA	NA
WP_002896384.1\|3547380_3548112_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_002896382.1\|3548154_3549627_-	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	7.9e-28	31.8
WP_002896380.1\|3549623_3550340_-	response regulator transcription factor	W8CYM9	Bacillus_phage	2.1e-34	36.9
WP_002896378.1\|3550418_3551546_-	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	A0A2K5B251	Erysipelothrix_phage	1.3e-19	25.6
WP_002896376.1\|3551587_3552076_-	DUF2593 family protein	NA	NA	NA	NA
WP_002896372.1\|3552133_3552979_-	putrescine ABC transporter permease PotI	NA	NA	NA	NA
WP_002896371.1\|3552975_3553929_-	putrescine ABC transporter permease PotH	NA	NA	NA	NA
WP_002896370.1\|3553939_3555073_-	putrescine ABC transporter ATP-binding subunit PotG	G3M9Y6	Bacillus_virus	2.2e-30	34.9
WP_002896368.1\|3555236_3556349_-	spermidine/putrescine ABC transporter substrate-binding protein PotF	NA	NA	NA	NA
WP_002896365.1\|3556697_3557177_-	YbjN domain-containing protein	NA	NA	NA	NA
WP_002896363.1\|3557265_3558168_-	30S ribosomal protein S6--L-glutamate ligase	A0A1D7SR78	Cyanophage	2.0e-34	35.3
WP_002896354.1\|3558989_3559277_-	YbjC family protein	NA	NA	NA	NA
WP_002896352.1\|3559479_3559743_+	GrxA family glutaredoxin	A0A2I7SAE2	Vibrio_phage	1.6e-27	73.1
WP_002896351.1\|3559749_3560133_-	inner membrane protein YbjM	NA	NA	NA	NA
WP_004179131.1\|3560399_3562085_+	aspartate:alanine antiporter	NA	NA	NA	NA
3562215:3562233	attL	NA	NA	NA	NA
WP_000972391.1\|3562304_3562523_-	ogr/Delta-like zinc finger family protein	Q53ZE7	Salmonella_virus	7.5e-20	69.0
WP_002896225.1\|3562614_3563715_-	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	4.9e-176	87.4
WP_087749901.1\|3563711_3564197_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	4.7e-62	75.0
WP_014342962.1\|3564193_3566587_-\|tail	phage tail tape measure protein	E5FFG5	Burkholderia_phage	1.1e-106	44.0
WP_002896220.1\|3566813_3566933_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.2e-13	87.2
WP_002896204.1\|3566947_3567247_-\|tail	phage tail assembly protein	E5G6P9	Salmonella_phage	3.7e-33	79.0
WP_002896201.1\|3567299_3567815_-\|tail	phage major tail tube protein	E5G6P8	Salmonella_phage	1.3e-81	85.4
WP_002896193.1\|3567824_3568997_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	1.9e-210	93.3
WP_002896191.1\|3569135_3570212_-\|tail	phage tail protein	Q37842	Escherichia_phage	1.2e-25	44.8
WP_002896188.1\|3570241_3570445_-	hypothetical protein	NA	NA	NA	NA
WP_002896186.1\|3570441_3571173_-	hypothetical protein	NA	NA	NA	NA
WP_019724930.1\|3571176_3571911_-	hypothetical protein	NA	NA	NA	NA
WP_004150856.1\|3574129_3574729_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	1.3e-58	60.5
WP_002896182.1\|3574721_3575630_-\|plate	baseplate assembly protein	E5G6N8	Salmonella_phage	7.6e-106	66.9
WP_002896179.1\|3575616_3575979_-	GPW/gp25 family protein	A0A1S6KZZ4	Salmonella_phage	5.8e-49	84.7
WP_002896177.1\|3575975_3576548_-\|plate	phage baseplate assembly protein V	E5G6N6	Salmonella_phage	4.7e-77	72.3
WP_004150857.1\|3576642_3577335_+	hypothetical protein	NA	NA	NA	NA
WP_002896175.1\|3577331_3577778_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	2.2e-50	71.2
WP_002896172.1\|3577770_3578202_-\|tail	phage tail protein	A0A1S6KZY0	Salmonella_phage	9.9e-64	82.5
WP_002896170.1\|3578164_3578311_-	hypothetical protein	A0A1S6KZX6	Salmonella_phage	6.0e-13	76.1
WP_002896168.1\|3578297_3578726_-\|lysis	LysB family phage lysis regulatory protein	A0A1S6KZX8	Salmonella_phage	9.6e-51	77.9
WP_002896163.1\|3578722_3579106_-	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	2.1e-17	42.0
WP_002896161.1\|3579110_3579620_-	lysozyme	E5G6N1	Salmonella_phage	2.1e-81	83.4
WP_002896158.1\|3579600_3579816_-	hypothetical protein	E5G6N0	Salmonella_phage	3.6e-30	90.1
WP_002896155.1\|3579819_3580023_-\|tail	tail protein X	A0A1S6KZY4	Salmonella_phage	1.3e-29	88.1
WP_002896151.1\|3580022_3580487_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	8.4e-77	89.0
WP_000059191.1\|3580582_3581233_-\|terminase	terminase endonuclease subunit	E5G6M7	Salmonella_phage	8.7e-112	96.3
WP_002895972.1\|3581236_3582295_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	1.1e-180	93.1
WP_002895967.1\|3582311_3583145_-\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	6.3e-123	88.8
WP_004150858.1\|3583287_3585054_+\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.0
WP_002895959.1\|3585053_3586079_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	7.6e-171	86.7
WP_004199124.1\|3586140_3587883_-	AIPR family protein	NA	NA	NA	NA
WP_000700647.1\|3588158_3588836_-	hypothetical protein	NA	NA	NA	NA
WP_001217575.1\|3588950_3589184_-	DinI family protein	E5G6M1	Salmonella_phage	4.7e-36	100.0
WP_001154434.1\|3589194_3589383_-	hypothetical protein	E5G6M0	Salmonella_phage	5.5e-27	98.4
WP_004150862.1\|3589536_3591951_-	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	97.5
WP_004150863.1\|3591947_3592805_-	DNA adenine methylase	E5G6L8	Salmonella_phage	2.0e-156	95.4
WP_000752622.1\|3592801_3593029_-	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	6.0e-36	98.7
WP_004150864.1\|3593028_3593262_-	DUF2732 family protein	E5G6L6	Salmonella_phage	4.1e-32	96.1
WP_000963473.1\|3593329_3593671_-	DUF5347 domain-containing protein	E5G6L5	Salmonella_phage	4.6e-56	99.1
WP_000956179.1\|3593634_3593835_-	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	1.6e-32	97.0
WP_000460893.1\|3593842_3594352_-	phage regulatory CII family protein	E5G6L3	Salmonella_phage	5.8e-87	98.8
WP_000188448.1\|3594384_3594606_-	hypothetical protein	NA	NA	NA	NA
WP_004152885.1\|3594751_3595630_+	phage repressor protein CI	A0A1S6KZZ7	Salmonella_phage	1.7e-30	39.9
WP_004150866.1\|3595641_3596586_+	hypothetical protein	NA	NA	NA	NA
WP_014342959.1\|3598054_3599035_+\|integrase	tyrosine-type recombinase/integrase	A0A218M4I3	Erwinia_phage	1.4e-97	57.2
3599110:3599128	attR	NA	NA	NA	NA

DBSCAN-SWA_10

4045343 : 4090618

Cronobacter_phage(25.0%)

head,tRNA,lysis,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004151249.1\|4045343_4047821_-	MoaD/ThiS family protein	F1C5A7	Cronobacter_phage	2.7e-198	45.6
WP_004151250.1\|4047807_4048203_-	C40 family peptidase	F1C5F2	Cronobacter_phage	8.0e-36	54.0
WP_004199076.1\|4048199_4048670_-	hypothetical protein	R9TPR6	Aeromonas_phage	2.5e-28	41.0
WP_004151252.1\|4048669_4049146_-	hypothetical protein	A0A2P1MXB5	Escherichia_phage	3.0e-37	49.7
WP_004151253.1\|4049188_4052635_-	tape measure protein	Q5G8W8	Enterobacteria_phage	1.4e-163	48.6
WP_004151254.1\|4052727_4053231_-	hypothetical protein	NA	NA	NA	NA
WP_004151255.1\|4053358_4054144_-	phage repressor protein	A0A2L1IV39	Escherichia_phage	1.9e-84	59.7
WP_004151256.1\|4054209_4054923_-	hypothetical protein	H6WRU8	Salmonella_phage	3.9e-49	50.2
WP_004151257.1\|4054912_4055083_-	Arc family DNA-binding protein	I6R9A8	Salmonella_phage	6.1e-17	87.0
WP_004151258.1\|4055182_4055542_+	Arc family DNA-binding protein	A0A0P0ZBD1	Stx2-converting_phage	3.8e-16	47.5
WP_004151259.1\|4055558_4056029_-	hypothetical protein	NA	NA	NA	NA
WP_004151260.1\|4056322_4056577_-	hypothetical protein	K7PM89	Enterobacteria_phage	6.7e-20	73.0
WP_004151261.1\|4056579_4057335_-	KilA-N domain-containing protein	K7PGT4	Enterobacteria_phage	2.4e-60	51.0
WP_004151262.1\|4057510_4058188_-	hypothetical protein	F1C5E8	Cronobacter_phage	4.8e-73	57.9
WP_004151263.1\|4058240_4058993_-	Ig domain-containing protein	G0ZNE6	Cronobacter_phage	5.8e-43	42.1
WP_004151264.1\|4059061_4059454_-	hypothetical protein	G0ZNE4	Cronobacter_phage	5.1e-35	52.7
WP_004151265.1\|4059450_4059876_-	hypothetical protein	R9TPP7	Aeromonas_phage	5.1e-28	47.9
WP_004151266.1\|4059878_4060241_-	hypothetical protein	A0A173GCE0	Salmonella_phage	1.8e-18	45.0
WP_004151267.1\|4060240_4060414_-	hypothetical protein	I6R0P9	Salmonella_phage	1.4e-13	56.1
WP_004151268.1\|4060413_4060794_-	hypothetical protein	F1C5E2	Cronobacter_phage	5.3e-29	55.3
WP_004151269.1\|4060796_4061036_-	hypothetical protein	NA	NA	NA	NA
WP_004151270.1\|4061046_4062141_-	hypothetical protein	F1C5E1	Cronobacter_phage	1.7e-123	62.8
WP_004151271.1\|4062152_4062581_-	hypothetical protein	F1C5E0	Cronobacter_phage	1.6e-42	60.8
WP_004151272.1\|4062584_4063970_-	DUF2213 domain-containing protein	F1C5D9	Cronobacter_phage	2.3e-154	60.0
WP_004151273.1\|4064042_4064519_-	hypothetical protein	NA	NA	NA	NA
WP_004151274.1\|4064560_4065565_-\|head	phage head morphogenesis protein	F1C5D8	Cronobacter_phage	9.0e-116	69.7
WP_004151275.1\|4065539_4066961_-	DUF1073 domain-containing protein	F1C5D7	Cronobacter_phage	9.6e-148	57.1
WP_004151276.1\|4066973_4068446_-	hypothetical protein	A0A1W6JNY3	Morganella_phage	1.3e-248	82.5
WP_004151277.1\|4068445_4069048_-	hypothetical protein	G8C7P2	Escherichia_phage	5.4e-76	80.9
WP_004151279.1\|4069418_4069748_+	hypothetical protein	NA	NA	NA	NA
WP_004151280.1\|4069853_4070318_-\|lysis	lysis protein	Q76H63	Enterobacteria_phage	2.4e-55	73.2
WP_004151281.1\|4070314_4070845_-	lysozyme	G9L6J6	Escherichia_phage	6.0e-79	78.5
WP_004151282.1\|4070847_4071096_-\|holin	class II holin family protein	NA	NA	NA	NA
WP_004151283.1\|4072005_4072695_-	antitermination protein	I6PDF8	Cronobacter_phage	1.4e-56	54.5
WP_004151284.1\|4072691_4073222_-	HNH endonuclease	A0A193GYW9	Enterobacter_phage	5.2e-30	43.1
WP_004151285.1\|4073214_4073352_-	YlcG family protein	NA	NA	NA	NA
WP_004151286.1\|4073348_4073984_-	recombination protein NinG	M9NYX8	Enterobacteria_phage	2.7e-81	77.9
WP_004151287.1\|4073976_4074147_-	NinE family protein	G8C7V4	Escherichia_phage	1.3e-14	73.2
WP_004151288.1\|4074146_4074602_-	hypothetical protein	K7P7B8	Enterobacteria_phage	8.0e-56	69.5
WP_004151291.1\|4075102_4075750_-	DUF551 domain-containing protein	A5LH60	Enterobacteria_phage	4.5e-12	32.6
WP_004151292.1\|4075746_4075923_-	hypothetical protein	NA	NA	NA	NA
WP_004151293.1\|4075922_4076765_-	ead/Ea22-like family protein	A0A2H4FRZ0	Salmonella_phage	1.8e-29	60.8
WP_004151294.1\|4076871_4077378_-	hypothetical protein	A0A0A6Z565	Enterobacter_phage	3.0e-27	59.6
WP_004151295.1\|4077374_4077668_-	protein ren	O48423	Enterobacteria_phage	3.3e-26	65.6
WP_004230547.1\|4077667_4079083_-	AAA family ATPase	Q9MCT4	Escherichia_phage	1.8e-183	67.1
WP_004230546.1\|4079087_4079939_-	hypothetical protein	F1C5C3	Cronobacter_phage	5.3e-85	56.3
WP_004151298.1\|4079979_4080126_-	hypothetical protein	NA	NA	NA	NA
WP_001548453.1\|4080211_4080433_-	hypothetical protein	G8EYH8	Enterobacteria_phage	6.9e-05	41.7
WP_004151299.1\|4080473_4080707_-	helix-turn-helix domain-containing protein	G8C7U2	Escherichia_phage	4.3e-13	50.7
WP_004151300.1\|4080834_4081524_+	helix-turn-helix transcriptional regulator	G8C7U1	Escherichia_phage	4.3e-61	52.2
WP_004151301.1\|4081874_4082090_+	hypothetical protein	B5WZV1	Pseudomonas_phage	1.6e-09	48.6
WP_004151302.1\|4082086_4082197_+	hypothetical protein	NA	NA	NA	NA
WP_004151303.1\|4082189_4082384_+	hypothetical protein	NA	NA	NA	NA
WP_004151304.1\|4082472_4082757_+	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	8.0e-30	62.8
WP_004151305.1\|4082772_4083618_+	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	6.9e-69	59.2
WP_004151306.1\|4083614_4084295_+	YqaJ viral recombinase family protein	A0A0M3ULE0	Salmonella_phage	7.9e-124	93.4
WP_004151308.1\|4084291_4084450_+	DUF1317 family protein	A0A0N7CHV0	Escherichia_phage	3.0e-10	60.8
WP_004151310.1\|4084446_4085103_+	DNA methyltransferase	G8C7S6	Escherichia_phage	2.7e-113	87.5
WP_004151312.1\|4085099_4085867_+	hypothetical protein	D5LH17	Escherichia_phage	1.7e-66	53.4
WP_004151314.1\|4085863_4086082_+	hypothetical protein	A0A1I9LJM7	Stx_converting_phage	1.2e-09	47.2
WP_004151316.1\|4086083_4086299_+	TraR/DksA family transcriptional regulator	A0A0K2FI84	Escherichia_phage	4.0e-13	52.9
WP_004151317.1\|4086300_4086636_+	excisionase family DNA-binding protein	NA	NA	NA	NA
WP_004143017.1\|4088106_4088973_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	1.3e-30	34.8
WP_004143016.1\|4088974_4089187_+	ribosome-associated protein YbcJ	NA	NA	NA	NA
WP_004143010.1\|4089232_4090618_-\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.5e-46	35.4

DBSCAN-SWA_11

4300173 : 4311827

Enterobacteria_phage(70.0%)

integrase

attL 4300025:4300038|attR 4304238:4304251

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4300025:4300038	attL	NA	NA	NA	NA
WP_004144574.1\|4300173_4301277_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	4.8e-62	40.5
WP_002889940.1\|4301287_4302541_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	8.9e-89	44.9
WP_002889938.1\|4302893_4304084_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	6.4e-145	62.7
WP_004152029.1\|4304071_4305022_+	AAA family ATPase	A0A1X9IGI7	Lactococcus_phage	1.2e-13	27.1
4304238:4304251	attR	NA	NA	NA	NA
WP_004152979.1\|4305021_4305447_+	hypothetical protein	NA	NA	NA	NA
WP_002889930.1\|4306015_4306582_-	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	1.5e-59	64.3
WP_002889919.1\|4306599_4306845_-	ogr/Delta-like zinc finger family protein	Q7M294	Enterobacteria_phage	1.9e-19	58.0
WP_002889917.1\|4306841_4307579_-	hypothetical protein	Q7M2A2	Enterobacteria_phage	9.0e-73	60.7
WP_002889915.1\|4308120_4308387_+	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	2.6e-30	71.6
WP_024940872.1\|4308383_4308941_+	ash family protein	Q7M2A7	Enterobacteria_phage	1.8e-33	70.4
WP_002889911.1\|4308937_4309165_+	hypothetical protein	NA	NA	NA	NA
WP_002889897.1\|4309161_4309482_+	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_002889890.1\|4309493_4311827_+	toprim domain-containing protein	Q7M2A8	Enterobacteria_phage	0.0e+00	82.2

DBSCAN-SWA_12

4788225 : 4794050

Enterobacteria_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004152207.1\|4788225_4790559_-	toprim domain-containing protein	Q7M2A8	Enterobacteria_phage	0.0e+00	83.9
WP_004152206.1\|4790573_4790894_-	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_004152205.1\|4790890_4791118_-	hypothetical protein	NA	NA	NA	NA
WP_004153681.1\|4791114_4791663_-	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	1.1e-30	69.4
WP_000556592.1\|4791659_4791926_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	2.0e-30	71.6
WP_004152204.1\|4792486_4793224_+	hypothetical protein	Q7M2A2	Enterobacteria_phage	1.1e-70	59.4
WP_004152203.1\|4793220_4793466_+	ogr/Delta-like zinc finger family protein	Q7M294	Enterobacteria_phage	5.5e-19	56.8
WP_004152202.1\|4793483_4794050_+	phage polarity suppression protein	Q7M2A1	Enterobacteria_phage	9.7e-59	63.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP054265

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

8032 : 106533

Escherichia_phage(24.24%)

bacteriocin,integrase,protease,transposase

attL 18042:18101|attR 94302:95497

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_004220208.1\|8032_9112_-\|transposase	IS481-like element ISKpn28 family transposase	NA	NA	NA	NA
WP_004118124.1\|9183_9345_+	type I toxin-antitoxin system Hok family toxin	NA	NA	NA	NA
WP_004152759.1\|10044_10317_+	hypothetical protein	NA	NA	NA	NA
WP_004152758.1\|10313_10664_+	hypothetical protein	NA	NA	NA	NA
WP_004152717.1\|11299_11656_+	hypothetical protein	A0A248SL90	Klebsiella_phage	2.6e-25	58.1
WP_004152718.1\|11716_11929_+	hypothetical protein	NA	NA	NA	NA
WP_004152719.1\|11939_12164_+	hypothetical protein	NA	NA	NA	NA
WP_004152720.1\|12244_12565_+	type II toxin-antitoxin system RelE/ParE family toxin	A0A088CBP5	Shigella_phage	6.8e-09	39.5
WP_004152721.1\|12554_12833_+	helix-turn-helix transcriptional regulator	O64356	Escherichia_phage	2.5e-07	39.4
WP_004152722.1\|12833_13247_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_004178064.1\|14080_14902_+	DUF945 domain-containing protein	K4F5L3	Cronobacter_phage	2.6e-44	40.4
WP_011977736.1\|14934_15264_+	hypothetical protein	NA	NA	NA	NA
WP_004178063.1\|15296_15782_-	transglycosylase SLT domain-containing protein	NA	NA	NA	NA
WP_004178062.1\|16215_16608_+	relaxosome protein TraM	NA	NA	NA	NA
WP_011977735.1\|16830_17517_+	conjugal transfer protein TraJ	NA	NA	NA	NA
WP_004208838.1\|17600_17972_+	TraY domain-containing protein	NA	NA	NA	NA
18042:18101	attL	NA	NA	NA	NA
WP_000019473.1\|18188_19169_-\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
WP_004152296.1\|20817_21096_+\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA
WP_009485932.1\|21436_21916_+	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	9.8e-20	35.2
WP_004199332.1\|22236_22515_+	replication regulatory protein RepA	NA	NA	NA	NA
WP_004171457.1\|22731_22809_+	RepA leader peptide Tap	NA	NA	NA	NA
WP_004152292.1\|22801_23659_+	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
WP_000093087.1\|25105_27301_-	DEAD/DEAH box helicase	NA	NA	NA	NA
WP_004152291.1\|27297_28614_-	ATP-binding protein	NA	NA	NA	NA
WP_004152290.1\|28617_30927_-	TerB N-terminal domain-containing protein	NA	NA	NA	NA
WP_077264219.1\|31571_32540_-\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	1.9e-184	98.4
WP_003846917.1\|32631_33885_-	lactose permease	NA	NA	NA	NA
WP_004152287.1\|33936_37011_-	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	96.7
WP_004152286.1\|37132_38215_-	DNA-binding transcriptional repressor LacI	C6ZCU4	Enterobacteria_phage	6.8e-186	96.4
WP_004152284.1\|38675_39686_+	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_165765869.1\|40019_40307_+	EAL domain-containing protein	NA	NA	NA	NA
WP_004118251.1\|40637_40931_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.7e-49	96.9
WP_004152282.1\|41029_41797_-	Fe(3+) dicitrate ABC transporter ATP-binding protein FecE	G3M9Y6	Bacillus_virus	9.8e-14	25.2
WP_004152281.1\|41797_42754_-	Fe(3+) dicitrate ABC transporter permease subunit FecD	NA	NA	NA	NA
WP_004118243.1\|42750_43749_-	iron-dicitrate ABC transporter permease FecC	NA	NA	NA	NA
WP_004118241.1\|43745_44648_-	Fe(3+) dicitrate ABC transporter substrate-binding protein FecB	NA	NA	NA	NA
WP_004152280.1\|44692_47017_-	Fe(3+) dicitrate transport protein FecA	NA	NA	NA	NA
WP_004118237.1\|47102_48056_-	fec operon regulator FecR	NA	NA	NA	NA
WP_004118235.1\|48052_48574_-	RNA polymerase sigma factor FecI	NA	NA	NA	NA
WP_161989521.1\|49535_49748_-	hypothetical protein	NA	NA	NA	NA
WP_004118231.1\|49676_49844_+\|integrase	integrase	NA	NA	NA	NA
WP_004118840.1\|50128_51256_+	transporter substrate-binding protein	NA	NA	NA	NA
WP_004118229.1\|51252_51846_+	ANTAR domain-containing protein	NA	NA	NA	NA
WP_004152279.1\|51842_52691_+	ABC transporter permease	NA	NA	NA	NA
WP_004118227.1\|52690_53611_+	ABC transporter permease	NA	NA	NA	NA
WP_004152278.1\|53623_55228_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004118225.1\|55272_56220_+	acetamidase/formamidase family protein	A0A1V0S8X7	Catovirus	9.6e-11	22.7
WP_004118832.1\|56227_57961_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.9e-15	29.6
WP_004152557.1\|61783_62131_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.0e-59	95.7
WP_020956879.1\|62127_62514_-\|transposase	transposase	B6DZU5	Stx2-converting_phage	1.1e-58	90.7
WP_004118217.1\|63061_63697_-	His-Xaa-Ser repeat protein HxsA	NA	NA	NA	NA
WP_000005560.1\|63693_64806_-	His-Xaa-Ser system radical SAM maturase HxsC	S5WIP3	Leptospira_phage	1.5e-47	33.8
WP_004152560.1\|64798_66187_-	His-Xaa-Ser system radical SAM maturase HxsB	S5VT21	Leptospira_phage	1.1e-50	29.0
WP_016197752.1\|66186_66417_-	His-Xaa-Ser system protein HxsD	NA	NA	NA	NA
WP_000412211.1\|67394_68054_+	type A-1 chloramphenicol O-acetyltransferase	G3CFL0	Escherichia_phage	8.4e-131	100.0
WP_000656305.1\|68254_68632_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_001138064.1\|68698_71665_-\|transposase	Tn3-like element TnAs3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.6
WP_000147567.1\|71667_72228_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	4.0e-49	86.2
WP_000454193.1\|72353_72704_-	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_000845039.1\|72906_73920_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_001083725.1\|74064_74562_+	trimethoprim-resistant dihydrofolate reductase DfrA12	A0A0A0PL85	Bacillus_phage	7.5e-23	40.9
WP_001336345.1\|74673_74964_+	DUF1010 domain-containing protein	NA	NA	NA	NA
WP_001206356.1\|74969_75761_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
WP_000679427.1\|75924_76272_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|76265_77105_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
WP_000376616.1\|77232_77436_+	hypothetical protein	NA	NA	NA	NA
WP_000184001.1\|77591_78797_+	chromate efflux transporter	NA	NA	NA	NA
WP_000130000.1\|78807_79113_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_001389365.1\|79339_80104_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_001137892.1\|80596_81181_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_000004159.1\|81180_82419_-	MFS transporter	NA	NA	NA	NA
WP_000219391.1\|82415_83321_-	Mph(A) family macrolide 2'-phosphotransferase	NA	NA	NA	NA
WP_001067855.1\|83442_84147_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000018329.1\|84297_85113_+	aminoglycoside O-phosphotransferase APH(3')-Ia	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	6.1e-163	100.0
WP_044503635.1\|85302_85971_-\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	3.3e-130	99.1
WP_001067855.1\|87274_87979_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_004153729.1\|88834_89662_+	phosphonate ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.6e-20	37.6
WP_004152695.1\|89658_90522_+	phosphate/phosphite/phosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_004152694.1\|90530_91358_+	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA
WP_004152693.1\|91366_92377_+	phosphonate dehydrogenase PtxD	A0A1V0SBV6	Catovirus	1.4e-15	25.1
WP_004152692.1\|92370_93240_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000019473.1\|94448_95429_-\|transposase	IS5-like element ISKpn26 family transposase	Q38213	Escherichia_phage	8.9e-185	99.1
WP_004118209.1\|96630_96894_-\|transposase	transposase	NA	NA	NA	NA
94302:95497	attR	NA	NA	NA	NA
WP_004118208.1\|96908_97172_+	hypothetical protein	NA	NA	NA	NA
WP_004152118.1\|97415_97697_+	helix-turn-helix domain-containing protein	A0A1B1IUF9	uncultured_Mediterranean_phage	5.2e-05	38.2
WP_004152117.1\|97731_98301_+	small heat shock protein sHSP20	NA	NA	NA	NA
WP_004152116.1\|98415_101211_+	heat shock survival AAA family ATPase ClpK	K4FB40	Cronobacter_phage	5.2e-129	41.0
WP_004152115.1\|101210_101408_+	hypothetical protein	NA	NA	NA	NA
WP_009483782.1\|101645_102395_+	phosphate-starvation-inducible PsiE family protein	NA	NA	NA	NA
WP_004152113.1\|102381_103344_+\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_020314316.1\|105186_106533_-\|transposase	ISNCY family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP054266

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. NZ_CP054267

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. NZ_CP054268

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. NZ_CP054265

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection