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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP045551 Pseudomonas putida strain 15420352 chromosome, complete genome 6 crisprs DEDDh,RT,csa3,DinG,cas3,WYL 0 1 13 0

Results visualization

1. NZ_CP045551
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045551_2 1526530-1526694 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045551_1 1524664-1525347 Orphan NA
9 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045551_3 1753729-1753836 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045551_4 3747640-3747712 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045551_5 5845251-5845333 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP045551_6 5937957-5938058 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP045551_2 2.4|1526604|26|NZ_CP045551|PILER-CR 1526604-1526629 26 MN961670 Pseudomonas putida strain 420352 plasmid p420352-IMP, complete sequence 592036-592061 4 0.846

1. spacer 2.4|1526604|26|NZ_CP045551|PILER-CR matches to MN961670 (Pseudomonas putida strain 420352 plasmid p420352-IMP, complete sequence) position: , mismatch: 4, identity: 0.846

gaggggaagatctccctgtttcgctg	CRISPR spacer
gtagggaagatttccctgcttcgctg	Protospacer
* .********.******.*******

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 313455 : 372492 53 Bacillus_virus(37.5%) integrase,protease,holin attL 318119:318165|attR 358454:358500
DBSCAN-SWA_2 1127580 : 1135359 10 Thermobifida_phage(16.67%) NA NA
DBSCAN-SWA_3 2060587 : 2130558 59 Pseudomonas_virus(25.0%) transposase,head,plate NA
DBSCAN-SWA_4 2222615 : 2231288 11 uncultured_Caudovirales_phage(75.0%) tRNA NA
DBSCAN-SWA_5 2327783 : 2430113 136 Pseudomonas_phage(42.86%) holin,head,protease,portal,capsid,transposase,tail,terminase,integrase,plate attL 2329882:2329909|attR 2434878:2434905
DBSCAN-SWA_6 2623974 : 2678381 45 Bacillus_phage(28.57%) transposase,plate NA
DBSCAN-SWA_7 2729701 : 2739978 14 uncultured_Caudovirales_phage(44.44%) NA NA
DBSCAN-SWA_8 2817970 : 2866109 82 uncultured_Caudovirales_phage(30.77%) holin,head,tail,terminase,integrase,plate attL 2817945:2817962|attR 2866282:2866299
DBSCAN-SWA_9 3264593 : 3330356 48 Serratia_phage(28.57%) protease,transposase,plate NA
DBSCAN-SWA_10 3339232 : 3377588 46 uncultured_Caudovirales_phage(62.5%) head,protease,terminase,portal,transposase,lysis,tail,capsid,plate NA
DBSCAN-SWA_11 3944248 : 3965195 16 Ectocarpus_siliculosus_virus(40.0%) transposase,coat NA
DBSCAN-SWA_12 4772312 : 4780837 7 uncultured_Mediterranean_phage(33.33%) transposase NA
DBSCAN-SWA_13 6087876 : 6143809 47 Salmonella_phage(33.33%) integrase,transposase attL 6083755:6083776|attR 6144896:6144917
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage