CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP045553	Pseudomonas sp. 13159349 chromosome, complete genome	2 crisprs	WYL,DEDDh,RT,cas3,csa3,DinG	0	1	9	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP045553_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP045553_1

4206745-4206837

Orphan

Consensus_repeat	Method
ATCGAGCGCCGCCCGCGCGGCGCTTCGCGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP045553_1

>merge|NZ_CP045553|1|4206745-4206837|CRISPRCasFinder
ATCGAGCGCCGCCCGCGCGGCGCTTCGCGGGTGTTCGCCTTGACGCTTTCTGCGCCTATGAAATCGAGCGCCGCCCGCGCGGCGCTTCGCGGG

>NZ_CP045553|1|1|4206745-4206837|CRISPRCasFinder
ATCGAGCGCCGCCCGCGCGGCGCTTCGCGGG	TGTTCGCCTTGACGCTTTCTGCGCCTATGAA
ATCGAGCGCCGCCCGCGCGGCGCTTCGCGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP045553.1\|WP_054573506.1\|4197975_4200216_-\|chemotaxis-protein-CheA	unknown	unknown	gnl\|CDD\|223716
NZ_CP045553.1\|WP_054573507.1\|4196789_4197929_-\|chemotaxis-response-regulator-protein-glutamate-methylesterase	unknown	unknown	gnl\|CDD\|234828
NZ_CP045553.1\|WP_054573508.1\|4196049_4196790_-\|flagellar-motor-protein	unknown	unknown	gnl\|CDD\|181654
NZ_CP045553.1\|WP_015271208.1\|4207093_4208236_-\|flagellar-biosynthesis-protein-FlhB	unknown	unknown	gnl\|CDD\|235569
NZ_CP045553.1\|WP_003257293.1\|4209313_4210069_-\|flagellar-type-III-secretion-system-pore-protein-FliP	unknown	unknown	gnl\|CDD\|235566
NZ_CP045553.1\|WP_013973595.1\|4211033_4212002_-\|flagellar-motor-switch-protein-FliM	unknown	unknown	gnl\|CDD\|235849
NZ_CP045553.1\|WP_015271204.1\|4200228_4201017_-\|protein-phosphatase-CheZ	unknown	unknown	gnl\|CDD\|377318
NZ_CP045553.1\|WP_015271207.1\|4204498_4206628_-\|flagellar-biosynthesis-protein-FlhA	unknown	unknown	gnl\|CDD\|235672
NZ_CP045553.1\|WP_043935791.1\|4214030_4214378_-\|Hpt-domain-containing-protein	unknown	unknown	gnl\|CDD\|225108
NZ_CP045553.1\|WP_003254408.1\|4202252_4203086_-\|MinD/ParA-family-protein	unknown	unknown	gnl\|CDD\|349758
NZ_CP045553.1\|WP_015271209.1\|4208238_4209015_-\|flagellar-type-III-secretion-system-protein-FliR	unknown	unknown	gnl\|CDD\|235568
NZ_CP045553.1\|WP_054573883.1\|4212695_4213958_-\|flagellar-hook-length-control-protein-FliK	unknown	unknown	gnl\|CDD\|225686
NZ_CP045553.1\|WP_015271206.1\|4203179_4204487_-\|flagellar-biosynthesis-protein-FlhF	unknown	unknown	gnl\|CDD\|235570
NZ_CP045553.1\|WP_161551427.1\|4201037_4201412_-\|chemotaxis-protein-CheY	unknown	unknown	gnl\|CDD\|381150
NZ_CP045553.1\|WP_003257294.1\|4209022_4209292_-\|flagellar-biosynthesis-protein-FliQ	unknown	unknown	gnl\|CDD\|235567
NZ_CP045553.1\|WP_003257298.1\|4201515_4202256_-\|RNA-polymerase-sigma-factor-FliA	unknown	unknown	gnl\|CDD\|235901
NZ_CP045553.1\|WP_003257291.1\|4210515_4210986_-\|flagellar-motor-switch-protein-FliN	unknown	unknown	gnl\|CDD\|168189
NZ_CP045553.1\|WP_015271211.1\|4212011_4212509_-\|flagellar-basal-body-associated-protein-FliL	unknown	unknown	gnl\|CDD\|180207
NZ_CP045553.1\|WP_013973579.1\|4195188_4196046_-\|flagellar-motor-protein-MotD	unknown	unknown	gnl\|CDD\|181618
NZ_CP045553.1\|WP_043936227.1\|4210068_4210503_-\|flagellar-biosynthetic-protein-FliO	unknown	unknown	gnl\|CDD\|225731

Protein	Function_ID	Function_description	E-value
NZ_CP045553.1\|WP_054573506.1\|4197975_4200216_-\|chemotaxis-protein-CheA	gnl\|CDD\|223716	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms].	0
NZ_CP045553.1\|WP_054573507.1\|4196789_4197929_-\|chemotaxis-response-regulator-protein-glutamate-methylesterase	gnl\|CDD\|234828	PRK00742, PRK00742, chemotaxis-specific protein-glutamate methyltransferase CheB.	0
NZ_CP045553.1\|WP_054573508.1\|4196049_4196790_-\|flagellar-motor-protein	gnl\|CDD\|181654	PRK09109, motC, flagellar motor protein; Reviewed.	3.51491e-163
NZ_CP045553.1\|WP_015271208.1\|4207093_4208236_-\|flagellar-biosynthesis-protein-FlhB	gnl\|CDD\|235569	PRK05702, flhB, flagellar type III secretion system protein FlhB.	0
NZ_CP045553.1\|WP_003257293.1\|4209313_4210069_-\|flagellar-type-III-secretion-system-pore-protein-FliP	gnl\|CDD\|235566	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed.	2.02062e-127
NZ_CP045553.1\|WP_013973595.1\|4211033_4212002_-\|flagellar-motor-switch-protein-FliM	gnl\|CDD\|235849	PRK06666, fliM, flagellar motor switch protein FliM; Validated.	3.35537e-171
NZ_CP045553.1\|WP_015271204.1\|4200228_4201017_-\|protein-phosphatase-CheZ	gnl\|CDD\|377318	pfam04344, CheZ, Chemotaxis phosphatase, CheZ. This family represents the bacterial chemotaxis phosphatase, CheZ. This protein forms a dimer characterized by a long four-helix bundle, composed of two helices from each monomer. CheZ dephosphorylates CheY in a reaction that is essential to maintain a continuous chemotactic response to environmental changes. It is thought that CheZ's conserved residue Gln 147 orientates a water molecule for nucleophilic attack at the CheY active site.	2.88515e-93
NZ_CP045553.1\|WP_015271207.1\|4204498_4206628_-\|flagellar-biosynthesis-protein-FlhA	gnl\|CDD\|235672	PRK06012, flhA, flagellar type III secretion system protein FlhA.	0
NZ_CP045553.1\|WP_043935791.1\|4214030_4214378_-\|Hpt-domain-containing-protein	gnl\|CDD\|225108	COG2198, ArcB, FOG: HPt domain [Signal transduction mechanisms].	2.00682e-10
NZ_CP045553.1\|WP_003254408.1\|4202252_4203086_-\|MinD/ParA-family-protein	gnl\|CDD\|349758	cd02038, FlhG-like, MinD-like ATPase FlhG. FlhG is a member of the SIMIBI superfamily. FlhG (also known as YlxH) is a major determinant for a variety of flagellation patterns. It effects location and number of bacterial flagella during C-ring assembly.	4.26107e-119
NZ_CP045553.1\|WP_015271209.1\|4208238_4209015_-\|flagellar-type-III-secretion-system-protein-FliR	gnl\|CDD\|235568	PRK05701, fliR, flagellar type III secretion system protein FliR.	3.52439e-76
NZ_CP045553.1\|WP_054573883.1\|4212695_4213958_-\|flagellar-hook-length-control-protein-FliK	gnl\|CDD\|225686	COG3144, FliK, Flagellar hook-length control protein [Cell motility and secretion].	9.6062e-22
NZ_CP045553.1\|WP_015271206.1\|4203179_4204487_-\|flagellar-biosynthesis-protein-FlhF	gnl\|CDD\|235570	PRK05703, flhF, flagellar biosynthesis protein FlhF.	0
NZ_CP045553.1\|WP_161551427.1\|4201037_4201412_-\|chemotaxis-protein-CheY	gnl\|CDD\|381150	cd19923, REC_CheY_CheY3, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY3 and similar CheY family proteins. CheY family chemotaxis response regulators (RRs) comprise about 17% of bacterial RRs and almost half of all RRs in archaea. This subfamily contains Vibrio cholerae CheY3, Escherichia coli CheY, and similar CheY family RRs. CheY proteins control bacterial motility and participate in signaling phosphorelays and in protein-protein interactions. CheY RRs contain only the REC domain with no output/effector domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	2.22098e-71
NZ_CP045553.1\|WP_003257294.1\|4209022_4209292_-\|flagellar-biosynthesis-protein-FliQ	gnl\|CDD\|235567	PRK05700, fliQ, flagellar type III secretion system protein FliQ.	1.213e-33
NZ_CP045553.1\|WP_003257298.1\|4201515_4202256_-\|RNA-polymerase-sigma-factor-FliA	gnl\|CDD\|235901	PRK06986, fliA, flagellar biosynthesis sigma factor; Validated.	7.04124e-130
NZ_CP045553.1\|WP_003257291.1\|4210515_4210986_-\|flagellar-motor-switch-protein-FliN	gnl\|CDD\|168189	PRK05698, fliN, flagellar motor switch protein FliN.	6.22144e-97
NZ_CP045553.1\|WP_015271211.1\|4212011_4212509_-\|flagellar-basal-body-associated-protein-FliL	gnl\|CDD\|180207	PRK05696, fliL, flagellar basal body-associated protein FliL; Reviewed.	1.4014e-77
NZ_CP045553.1\|WP_013973579.1\|4195188_4196046_-\|flagellar-motor-protein-MotD	gnl\|CDD\|181618	PRK09038, PRK09038, flagellar motor protein MotD; Reviewed.	0
NZ_CP045553.1\|WP_043936227.1\|4210068_4210503_-\|flagellar-biosynthetic-protein-FliO	gnl\|CDD\|225731	COG3190, FliO, Flagellar biogenesis protein [Cell motility and secretion].	1.40216e-27

>NZ_CP045553.1|WP_015271207.1|4204498_4206628_-|flagellar-biosynthesis-protein-FlhA
MDRTQLISNARNNLAGLGRGNLGVPLLLLVMLAMMMLPIPPFLLDVFFTFNIALSIVVLLVCVYALRPLDFAAFPTILLVATLLRLALNVASTRVVMLHGQEGHGAAGKVIQAFGEVVIGGNYVVGAVVFAILMIINFVVVTKGAGRISEVSARFTLDAMPGKQMAIDADLNAGLIDQAQAKHRRAEVAQEAEFYGSMDGASKFVRGDAIAGLLILFINLIGGMLIGMLQHGMSFGDAGKVYALLTIGDGLVAQLPSLLLSTAAAIMVTRASGSEDMGKLINRQMFDSPKALAVSGALMIVMGLVPGMPHVAFLSLGLLAGGGAYLVWKKQQKAKAQALQEAQRQQDLLPSPQRALETKELGWDDVTPIDMIGLEVGYRLIPLVDRNQGGQLLARIKGVRKKLSQDLGFLMPTVHIRDNLDLQPSAYRLTLMGVILAEAEIYPDRELAINPGQVFGTLNGIAARDPAFGLEAVWIDVGQRSQAQSLGYTVVDASTVVATHLNQILQKHCHELIGHEEVQQLLQVLAKASPKLAEELVPGVISLSGLLKVLQALLSEQVPVRDIRSIAEAIANNAGKSQDTAALVAAVRVGLCRAIVQSIVGVESELPVITLEPRLEQILLNSLQRAGQGQEDGVLLEPSMAEKLQRSLIEAAQRQEMQGQPAILLVAGPIRAMLSRFGRLAVPNLHVLAYQEIPDNKQVTIIATVGPNG
>NZ_CP045553.1|WP_015271206.1|4203179_4204487_-|flagellar-biosynthesis-protein-FlhF
MQVKRFFAADMRQAMKLVRDELGADAAIIGNRRIAGGVELTAALDYKLSALAPRVPNAELEEELRKTHTRIATAQAELGHRQDSSDNNRQLFAGQSLTAAEPLIEPHVDVPEAAAAPASAPVDPRLFDAMRSELSGLRELLEVQLGSLAWNQLQGSKPQQATVWRRLQRIGLSGPIARELLDLTAEIDEPRQAWRMLLAHLARMIEIPEVEPIEEGGVIAMVGPAGMGKTTTLAKLAARYVLKYGAQNLALVSMDSFRIGAQEQLKTLGRILNVPVTYVDPGQSLAAALEPLLRKRVVLIDTAGLQASDPALRMQLDTLAGRGIAAKNYLVLATTSQKQVLTAAYHSYKRCGLAGCILTKLDETASLGDVLSLAISHELPVAYLTDGPRIPDDLHLPRGHQLVSRAVNVQQQDEPSEEAMADMFADLYHNPRRAG
>NZ_CP045553.1|WP_003254408.1|4202252_4203086_-|MinD/ParA-family-protein
MGSMHPVQVIAVTGGKGGVGKTNVSVNLSLALAELGRRVMLLDADLGLANVDVLLGLTPKRTLADVIEGRCELRDVMLQGPGGVRIVPAASGTQSMVHLAPAQHAGLIQAFSEIGDNLDVLVIDTAAGIGDSVVSFVRAAQEVLLVVCDEPTSITDAYALIKLLNRDYGMNRFRVLANMAQSPQEGRNLFAKLTKVTDRFLDVALQYVGAVPYDECVRKAVQKQRAVYEAFPRSKCALAFKAIAQKVDSWPLPANPRGHLEFFVERLVQPTSAGPVL
>NZ_CP045553.1|WP_003257298.1|4201515_4202256_-|RNA-polymerase-sigma-factor-FliA
MNASGFKMYSRASKDAQYELIERYAPLVKRIAYHLLARLPANVQVEDLIQAGMIGLLEVANKYDASKGASFETYAGIRIRGAMLDEVRKGDWAPRSVHRNTRMVSDAMRAVEARTGRDAKDHEVAAELQLSLDDYYGILNDTLGSRLFSFDDLLQDGEHEGLHEDGASGQVEPARGLEDERFQAALTEAISNLPERERLVLALYYDEELNLKEIGEVLGVSESRVSQLHSQCAARLRSRLGEWRAR
>NZ_CP045553.1|WP_161551427.1|4201037_4201412_-|chemotaxis-protein-CheY
MKILIVDDFSTMRRIIKNLLRDLGFTNTEEADDGTTALPMLENGHYDFLVTDWNMPGMSGIDLLRKVRAHDRLKTMPVLMVTAEAKRDQIIEAAQAGVNGYVVKPFTAQVLKEKIEKIFERVNG
>NZ_CP045553.1|WP_015271204.1|4200228_4201017_-|protein-phosphatase-CheZ
MDSSQTSLGEFESTLKKHAQELVESLERGRFGEAVQLIHELNQTRDRGLYQEVGKLTRELHSAIVSFQIDPTMPQAEEVSQITDATERLSYVVRLTEGAANRTMDLVEESTPVLNDLASEAQALSTDWQRFMRREVAAPEFRDLVKRVDSFLTHSAEGNRKVAGHLNDILLAQDYQDLTGQVIKRVTTLVTEVESNLLKLVLMASQVDRFAGIQHDHDQLRAEKDREKHPTRGEGPQIHADKREDVVSGQDDVDDLLSSLGF
>NZ_CP045553.1|WP_054573506.1|4197975_4200216_-|chemotaxis-protein-CheA
MSFGADEEILQDFLVEAGEILEQLSEQLVELESRPDDADLLNAIFRGFHTVKGGAGFLQLNELVECCHIAENVFDVLRKGERRVDAELMDVVLEALDTVNSMFGQVRERAEVTPATPELLAALSRLAEPGGAVAVEAPAAAAPAPVAEAPAEEQDITDSEFEQLLDSLDAVKAQAAADEQMQGETVSGEGDEITDAEFESLLDQLHGKGQFSAEVAAQPVAGAPEPASDEITDAEFESLLDQLHGKGTFQADALPAAKALAPAATDTSAASDEISEHEFEALLDQLHGKGKFGGDVAAVEAPAATKVQAPAAAKADSQPVAKPAAATTPAPAPAPASKPAAAPRAPAPAADKHGASEAETTVRVDTARLDEIMNMVGELVLVRNRLVRLGLNSGDEAMSKAVSNLDVVTADLQTAVMKTRMQPIKKVFGRFPRLVRDLARQLKKEINLELVGEETDLDKNLVEALADPLVHLVRNAVDHGVEMPEEREASGKARTGRVVLSAEQEGDHILLSISDDGKGMDPNILRAKAVEKGLMDKDAADRLSESDCYNLIFAPGFSTKTEISDVSGRGVGMDVVKTKISQLNGSINIFSAKGQGSKIVIKVPLTLAIMPTLMVMLGNQAFAFPLVNVNEIFHLDLSRTNVVDGQEVVIVRDKALPLFYLKRWLVQGQVHEEQHEGHVVILSVGTQRIGFVVDQLVGQEEVVIKPLGKMLQGTPGMSGATITGDGRIALILDVPSMLKRYAARRI
>NZ_CP045553.1|WP_054573507.1|4196789_4197929_-|chemotaxis-response-regulator-protein-glutamate-methylesterase
MAVKVLVVDDSGFFRRRVSEILSADPTIQVVGTATNGKEAIDQALALKPDVITMDYEMPMMDGITAVRHIMQRCPTPVLMFSSLTHEGARVTLDALDAGAVDYLPKNFEDISRNPDKVKQLLCEKVHTISRSNRRFGSYASHAPVAAPVPAPAGSGHAAASSFASPAAVRTPAPARAAAPAAAPAHSPAPKRKPYKLVAIGTSTGGPVALQRVLTQLPANFPAPIVLIQHMPAAFTKAFAERLDKLCRISVKEAEDGDMLRPGLALLAPGGKQMMIDGRGTVKILPGDERLNYKPCVDITFGSAAKSYGDKVLSVVLTGMGADGREGARLLKQGGSTVWAQDEASCVIYGMPMAIVKANLADAVYSLDEIGKHLVEACV
>NZ_CP045553.1|WP_054573508.1|4196049_4196790_-|flagellar-motor-protein
MDVLSLIGLILAFVAIVGGNFLEGGHVGALVNGPAALIVLGGTLAAALLQSPLSSFKRALQILRWILFPPRVDLAGGVDRVVNWSLTARKEGLLGLEGVADSEPDPYARKGLQLLVDGAEPEAIRSILEVDFLTQESRDIQAAKVFESMGGYAPTIGIIGAVMGLIHVMGNLADPSQLGNGIAVAFVATIYGVASANLVLLPVANKLKAIVMRQSRYREMLLEGLLSIAEGENPRSIELKLQGFME
>NZ_CP045553.1|WP_013973579.1|4195188_4196046_-|flagellar-motor-protein-MotD
MRRRRHTEEHENHERWLVSYADFITLLFAFFVVMYSISSINEGKYKVISQALLGVFNDPERSMKPIPIGEERPLSVRPAEPLVKDSEQTDAGLGATSIDPLKTISDDVRDAFGDLIKSDQMTVRGNELWIEIELNSSLLFGSGDAMPSDKAFAIIEKVAGILKPFANPVHVEGFTDNLPIRTAQYPTNWELSSARAASIVRLLAMEGVNPARMASVGYGEYQPVASNDTAEGRARNRRVVLVISRNLEVRRSLTGSGSANATPDAALRRAGTQSAPATPATVAGQ
>NZ_CP045553.1|WP_015271208.1|4207093_4208236_-|flagellar-biosynthesis-protein-FlhB
MAESESGQDKTEEPTDKRKRDAREKGEIARSKELNTVAVTLAGAGGLLAFGGHLAETLLAIMRMNFSLTRDFIVDERAMGAFLLASGKMAIWAVQPILILLFVISFVAPIVLGGFLFSGSLLQPKFSRMNPLSGIKRMFSMNALTELLKALAKFFVILVVAVVVLVNDRQALLAIANEPLEQAIIHSLQVVGWSALWMSAGLLLIAAADVPFQLWQTHNKLKMTKQEIKDEYKDSEGKPEVKQRIRQLQREASQRRMMAAVPEADVIITNPTHYAVALQYDPEKGGAAPLLLAKGTDFIALKIREIGVEHKVQILESPALARAIYYSTELEQEIPAGLYLAVAQVLAYVFQIRQYRAGKGKRPEPLKDDLPIPPDLRRDS
>NZ_CP045553.1|WP_015271209.1|4208238_4209015_-|flagellar-type-III-secretion-system-protein-FliR
MLELTDTQIGTWVATFILPLFRVTAVLMTMPIFGTRMLPARVRLYVAVAITVVIVPALPPLPEFDPLSLRGLLLCAEQVIVGALFGLSLQLLFQAFVIAGQIVAVQMGMAFASMVDPANGVNVAVISQFMTMLVSVLFLLMNGHLVAFEVLTESFTTLPVGNALVVNQFWELAGRLGWVFGAGLLLILPAIAALLVVNIAFGVMTRAAPQLNIFSIGFPLTLVMGMFIFWVGLADILSHYQALASEALQWLRDLARAR
>NZ_CP045553.1|WP_003257294.1|4209022_4209292_-|flagellar-biosynthesis-protein-FliQ
MTPEVAVDLFRDALWLTTLMVAILVVPSLLVGLVVAMFQAATQINEQTLSFLPRLLVMLVTLIIAGPWLVQKFMEYFTSLYTNIPQLIG
>NZ_CP045553.1|WP_003257293.1|4209313_4210069_-|flagellar-type-III-secretion-system-pore-protein-FliP
MSGALRVLLTLALLLAAPLALGADPLSIPAITLSNTADGQQEYSVSLQILLIMTALSFIPAFVILMTSFTRIIIVFSILRQALGLQQTPSNQLLTGMALFLTMFIMAPVFDRVNQDALQPYLKEQMTAQQAIDKAQGPLKDFMLAQTRQSDLDLFMRLSKRTDIAGPDQVPLTILVPAFVTSELKTAFQIGFMIFIPFLIIDMVVASVLMAMGMMMLSPLIISLPFKIMLFVLVDGWALIMGTLASSFGGV
>NZ_CP045553.1|WP_043936227.1|4210068_4210503_-|flagellar-biosynthetic-protein-FliO
MRAIAAAAALLASQACLAAATPAATPATAPGSLGGQLAQMVFGLLLVVGLIFFLAWLLRRMQSTAVKGGQVIEIVGSRAIGPRDRLLLVQVGKEQILIGHTPGSIEALHVLAEPVEVPENARQATPEFAQRLMELMGKDPKDKK
>NZ_CP045553.1|WP_003257291.1|4210515_4210986_-|flagellar-motor-switch-protein-FliN
MANENEITSAEDQALADEWAAALEETGAAGQADIDALLGGDTGSSTGGAGRLPMEEFASSPKPNENVSLEGPNLDVILDIPVNISMEVGSTEINIRNLLQLNQGSVIELDRLAGEPLDVLVNGTLIAHGEVVVVNEKFGIRLTDVISPSERIKKLR
>NZ_CP045553.1|WP_013973595.1|4211033_4212002_-|flagellar-motor-switch-protein-FliM
MAVQDLLSQDEIDALLHGVDDGLVQTESASEPGSIKSYDLTSQDRIVRGRMPTLEMINERFARYTRISMFNLLRRSADVAVGGVQVMKFGEYVHSLYVPTSLNLVKIKPLRGTSLFILDAKLVFKLVDNFFGGDGRHAKIEGREFTPTELRVVRMVLDQCFVDLKEAWQAIMPVTFEYMNSEVNPAMANIVGPSEAVVVSTFHIELDGGGGDLHVTMPYSMIEPVREMLDAGFQSDLDDQDERWVKALREDVLDVAVPLTATVARRQLKLRDILHMQPGDVIPVELPEHLVLRANGVPSFKARLGSHKGNLALQIIDPIERR
>NZ_CP045553.1|WP_015271211.1|4212011_4212509_-|flagellar-basal-body-associated-protein-FliL
MAKSEAVKDPATKGKLKLILLAVVGLLLAIGLSVGATWFIMHKSEPAPAADPAASNVKPAAIYEALAPAFVVNFNQNGRQRYMQVSITLQARNQADLDALKVHMPVIRNNLVMMFSGQGFDTLAGSPVGQEMLRQKATAVVQEVAQKEVGKPVVDQLLFTNFVLQ
>NZ_CP045553.1|WP_054573883.1|4212695_4213958_-|flagellar-hook-length-control-protein-FliK
MPVAPNPLLQGNAIANTSRPAAAQADKPLQAPGDKGDGFGQVMARQGRDKAAGQDDKVAQAKPKDKLEAAQGGKKGAADKPAVADDGKQLPADDQAQADTGLRDASLVAGQVTDAQPGAQLIQAQAEAVAPVLQAAAAQVTAELPEEPAAEEAFDPDADPLANLPTLRLALEQSAQAKGATSAHALDPSQAQGEEGQAAVNTLANLVENAEGETGEPGDKAFAALLEDGLKDTKGAGSDTRIDDFANRLASLTQAATAKTANAVPANASPLHQPLPMNQNAWAEGLVNRVMYLSSQNLKSADIQLEPAELGRLDIRVNVATDQSTQVTFISGHAGVRDALDSQVHRLRELFAQQGLAQPDVNVADQSRGQQQQQQGQAQGSNLSGVAARRAEQGGAEAVDSARPVEQQVVVGDSAVDYYA
>NZ_CP045553.1|WP_043935791.1|4214030_4214378_-|Hpt-domain-containing-protein
MTDMHIDHKVLSDLREVMEDGYLQLVQTFLDDSERRLGQLHAAKSAEELGSAAHSFKGSSSNMGAIALASLCQQLEERARRPPLYGIEDLINRIDLEFVEVQRFYRGEQQRISAG

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Crispr_ID: NZ_CP045553_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP045553_2

5233120-5233242

Orphan

Consensus_repeat	Method
GTGGGAGCTGGCTTGCCAGCGATAGGGCCGGGACAGGCAG	CRISPRCasFinder

1 spacers

DEDDh

The CRISPR arrays of NZ_CP045553_2

>merge|NZ_CP045553|2|5233120-5233242|CRISPRCasFinder
GTGGGAGCTGGCTTGCCAGCGATAGGGCCGGGACAGGCAGTTCCAACAGGCACTACACATGGCTTCAGGCCGGTGCAGTTCCTGTGGGAGCTGGCTTGCCGGCGATAGGGCCGGGACAGGCAG

>NZ_CP045553|2|2|5233120-5233242|CRISPRCasFinder
GTGGGAGCTGGCTTGCCAGCGATAGGGCCGGGACAGGCAG	TTCCAACAGGCACTACACATGGCTTCAGGCCGGTGCAGTTCCT
GTGGGAGCTGGCTTGCCGGCGATAGGGCCGGGACAGGCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP045553.1\|WP_015271931.1\|5241690_5242488_+\|hydroxymethylpyrimidine/phosphomethylpyrimidine-kinase	unknown	unknown	gnl\|CDD\|180561
NZ_CP045553.1\|WP_054573602.1\|5229085_5231614_-\|ATP-dependent-helicase-HrpB	unknown	unknown	gnl\|CDD\|273901
NZ_CP045553.1\|WP_039613572.1\|5226213_5226819_-\|3'-5'-exonuclease	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|176648
NZ_CP045553.1\|WP_013974331.1\|5234963_5235167_+\|DUF2788-domain-containing-protein	unknown	unknown	gnl\|CDD\|378526
NZ_CP045553.1\|WP_013974320.1\|5223305_5224637_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|236722
NZ_CP045553.1\|WP_054573599.1\|5239436_5241425_-\|hybrid-sensor-histidine-kinase/response-regulator	unknown	unknown	gnl\|CDD\|377898
NZ_CP045553.1\|WP_015271920.1\|5226828_5227308_-\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350235
NZ_CP045553.1\|WP_054573600.1\|5237627_5239280_-\|acyl-CoA-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|183199
NZ_CP045553.1\|WP_054573598.1\|5242501_5243125_+\|thiamine-phosphate-synthase	unknown	unknown	gnl\|CDD\|234590
NZ_CP045553.1\|WP_015271918.1\|5225767_5226217_+\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
NZ_CP045553.1\|WP_015271928.1\|5235948_5237412_-\|AMP-nucleosidase	unknown	unknown	gnl\|CDD\|236222
NZ_CP045553.1\|WP_170304012.1\|5232175_5233045_+\|cation-diffusion-facilitator-family-transporter	unknown	unknown	gnl\|CDD\|181919
NZ_CP045553.1\|WP_054573604.1\|5227470_5228226_-\|DUF2076-domain-containing-protein	unknown	unknown	gnl\|CDD\|370723
NZ_CP045553.1\|WP_173896041.1\|5228392_5229049_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235080
NZ_CP045553.1\|WP_013974328.1\|5231730_5232150_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045553.1\|WP_054573605.1\|5224692_5225613_-\|drug/metabolite-exporter-YedA	unknown	unknown	gnl\|CDD\|183067
NZ_CP045553.1\|WP_161551539.1\|5235303_5235846_-\|pseudouridine-synthase	unknown	unknown	gnl\|CDD\|211334
NZ_CP045553.1\|WP_013974339.1\|5243140_5244424_+\|glutamate-1-semialdehyde-2,1-aminomutase	unknown	unknown	gnl\|CDD\|234607
NZ_CP045553.1\|WP_015271926.1\|5233252_5234038_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP045553.1\|WP_003249795.1\|5234432_5234909_+\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439

Protein	Function_ID	Function_description	E-value
NZ_CP045553.1\|WP_015271931.1\|5241690_5242488_+\|hydroxymethylpyrimidine/phosphomethylpyrimidine-kinase	gnl\|CDD\|180561	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed.	6.82137e-123
NZ_CP045553.1\|WP_054573602.1\|5229085_5231614_-\|ATP-dependent-helicase-HrpB	gnl\|CDD\|273901	TIGR01970, ATP-dependent_RNA_helicase_HrpB, ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. [Unknown function, Enzymes of unknown specificity].	0
NZ_CP045553.1\|WP_039613572.1\|5226213_5226819_-\|3'-5'-exonuclease	gnl\|CDD\|176648	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family. DEDDh exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. These proteins contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDh exonucleases are classified as such because of the presence of specific Hx(4)D conserved pattern at the ExoIII motif. The four conserved acidic residues are clustered around the active site and serve as ligands for the two metal ions required for catalysis. Most DEDDh exonucleases are the proofreading subunits (epsilon) or domains of bacterial DNA polymerase III, the main replicating enzyme in bacteria, which functions as the chromosomal replicase. Other members include other DNA and RNA exonucleases such as RNase T, Oligoribonuclease, and RNA exonuclease (REX), among others.	1.0617e-49
NZ_CP045553.1\|WP_013974331.1\|5234963_5235167_+\|DUF2788-domain-containing-protein	gnl\|CDD\|378526	pfam10981, DUF2788, Protein of unknown function (DUF2788). This bacterial family of proteins have no known function.	2.36242e-11
NZ_CP045553.1\|WP_013974320.1\|5223305_5224637_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|236722	PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional.	6.81441e-160
NZ_CP045553.1\|WP_054573599.1\|5239436_5241425_-\|hybrid-sensor-histidine-kinase/response-regulator	gnl\|CDD\|377898	pfam07695, 7TMR-DISM_7TM, 7TM diverse intracellular signalling. This entry represents the transmembrane region of the 7TM-DISM (7TM Receptors with Diverse Intracellular Signalling Modules).	4.56035e-54
NZ_CP045553.1\|WP_015271920.1\|5226828_5227308_-\|NYN-domain-containing-protein	gnl\|CDD\|350235	cd10911, PIN_LabA, PIN domain of Synechococcus elongatus LabA (low-amplitude and bright) and related proteins. This subfamily contains Synechococcus elongatus PCC 7942 LabA which participates in cyanobacterial circadian timing, it is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system, and appears to be necessary for KaiC-dependent repression of gene expression. This subfamily belongs to the LabA-like domain family which includes the N-terminal domain of limkain b1, a human autoantigen localized to a subset of ABCD3 and PXF marked peroxisomes. Also included in the LabA-like domain family are human ZNF451, uncharacterized Bacillus subtilis YqxD, uncharacterized Escherichia coli YaiI, and the N-terminal domain of a well-conserved group of mainly bacterial proteins with no defined function, which contain a C-terminal LabA_like_C domain. Curiously Pseudomonas putida S16 NicB , which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls into the LabA-like family. The PIN (PilT N terminus) domain belongs to a large nuclease superfamily. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	3.66263e-45
NZ_CP045553.1\|WP_054573600.1\|5237627_5239280_-\|acyl-CoA-dehydrogenase-family-protein	gnl\|CDD\|183199	PRK11561, PRK11561, isovaleryl CoA dehydrogenase; Provisional.	3.61494e-167
NZ_CP045553.1\|WP_054573598.1\|5242501_5243125_+\|thiamine-phosphate-synthase	gnl\|CDD\|234590	PRK00043, thiE, thiamine phosphate synthase.	2.79356e-80
NZ_CP045553.1\|WP_015271918.1\|5225767_5226217_+\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	1.16519e-33
NZ_CP045553.1\|WP_015271928.1\|5235948_5237412_-\|AMP-nucleosidase	gnl\|CDD\|236222	PRK08292, PRK08292, AMP nucleosidase; Provisional.	0
NZ_CP045553.1\|WP_170304012.1\|5232175_5233045_+\|cation-diffusion-facilitator-family-transporter	gnl\|CDD\|181919	PRK09509, fieF, CDF family cation-efflux pump FieF.	9.97198e-106
NZ_CP045553.1\|WP_054573604.1\|5227470_5228226_-\|DUF2076-domain-containing-protein	gnl\|CDD\|370723	pfam09849, DUF2076, Uncharacterized protein conserved in bacteria (DUF2076). This domain, found in various hypothetical prokaryotic proteins, has no known function. The domain, however, is found in various periplasmic ligand-binding sensor proteins.	4.14469e-56
NZ_CP045553.1\|WP_054573605.1\|5224692_5225613_-\|drug/metabolite-exporter-YedA	gnl\|CDD\|183067	PRK11272, PRK11272, putative DMT superfamily transporter inner membrane protein; Provisional.	4.62299e-158
NZ_CP045553.1\|WP_161551539.1\|5235303_5235846_-\|pseudouridine-synthase	gnl\|CDD\|211334	cd02566, PseudoU_synth_RluE, Pseudouridine synthase, Escherichia coli RluE. This group is comprised of bacterial proteins similar to E. coli RluE. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. Escherichia coli RluE makes psi2457 in 23S RNA. psi2457 is not universally conserved.	8.93866e-94
NZ_CP045553.1\|WP_013974339.1\|5243140_5244424_+\|glutamate-1-semialdehyde-2,1-aminomutase	gnl\|CDD\|234607	PRK00062, PRK00062, glutamate-1-semialdehyde 2,1-aminomutase.	0
NZ_CP045553.1\|WP_173896041.1\|5228392_5229049_+\|hypothetical-protein	gnl\|CDD\|235080	PRK02868, PRK02868, hypothetical protein; Provisional.	6.09165e-05
NZ_CP045553.1\|WP_003249795.1\|5234432_5234909_+\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	1.4148e-47

>NZ_CP045553.1|WP_170304012.1|5232175_5233045_+|cation-diffusion-facilitator-family-transporter
MTTSAEHQRLLRLATRASLAVASILVLSKALAWWLSGSVSLLAGLTDSALDAVASFLNLLAVHYALRPADDDHRFGHGKAEALAGMAQALFIGVSAVLIGVQAVERLHTPQPLGDTAVGIGVMLLSLVLTLALLALQHKVIRLTGSTAVRADSLHYRSDLLLNGSILLALLLARFGWPQLDALFGLGIAVYILWSALQIARESTAILMDQELPGDVGEAMAALVLAIPGVKGVHDLRTRVSGNQWFVQLHLEMPGQLPLHEAHALCVEASKVIRQRYPQADVMVHADPV
>NZ_CP045553.1|WP_013974328.1|5231730_5232150_+|hypothetical-protein
MRIPTRVIGGALIVTLLTQLTACGTILYPERRGQIGGKIDPVVAAMDAIGILFYVIPGLIAFGIDFATGAIYYSGGRSAQVDPVKLREAVSPDGKVDNLKLQAILESELGQRLPLNDPRLIQHRGSIEQLASLGLVPAA
>NZ_CP045553.1|WP_054573602.1|5229085_5231614_-|ATP-dependent-helicase-HrpB
MISLPIDAVLPALRQALENRDEAVLEAPPGAGKTTRVPLALLNEPWLAGQSILMLEPRRLAARAAAERLASELGEKVGETVGYRIRLDSKVGPKTRIEVVTEGILTRRLQADPALEGVGLVIFDEFHERSLDADLALALSLNGRELLRDDPPLKVLLMSATLEGERLSRLLNDAPVVSSEGRMYPVDIRWGRPFQPGEFIEPRVVDSVLQALADQTGSLLVFLPGQAEIRRVHQSLQEALGERPEVLLCPLHGELDLDAQRAAIDPAPKGLRKVVLATNIAETSLTIDGVRVVIDAGLARVPRFDPGSGMTRLDTQRISRASATQRAGRAGRLEPGVCYRLWSEAQHDQLAAHGSAEIMQADLAGLALQLARWGVTPEQLRWLDQPPTAAFTQAQDLLARLNAFKPGSRDNLSEHGLAMAELPAHPRIAHLLLRGQDLGLAQMACDVAALLGERDIQRGGGADLHSRLALVSGESRTARGSHGGVQRARQLSRQYRGMLRGKPGVPVADPDHPRWLGALLALAYPDRVAQQRREGGAEYRLANGRAALFAEVDALMKCPWLVIADLGSRQGQREERIYLAAEFDPALFEGVLAEQVERVDILDWDEREQVLRAERQVKVGELVLSREPLPGLDDEARARALLGLVRRKGLNLLTWTPELRQWQARVALLRQLDLAKDGHSEWPDLADEALLASLEDWLQPYLGKVSRLSHFAALDLPSMLRNLLPWPLPQRLEEQAPAHLAVPSGSNIRLDYSENPPILAVRLQELFGLAETPRIANGRQQVKLHLLSPARRPVQVTQDLANFWRTTYAEVKKDLKGRYPKHYWPDDPLVAEATARAKPRGT
>NZ_CP045553.1|WP_173896041.1|5228392_5229049_+|hypothetical-protein
MNPLSVLRDSLYFFRRHLPSILQLCLPLVVLEALLTQLLYRQMGDQASPAYGMLISLLFYPLYSAALILYLDTRSNGQEIAKRDLFARAVQLWPQLALLILISSLLIMAGLALFIFPGVWIMINLVFAEYLLVLRGRPVVQSMRDSASMTTGHFMRIMICVVGVLAPIWLIDGLLLMAFPEPSPGMELAMDSLSGFLQLFSTLVLYRLFMLLEGEAGT
>NZ_CP045553.1|WP_054573604.1|5227470_5228226_-|DUF2076-domain-containing-protein
MNTEEQTLIDGLFGRLKQAEDPSQPRDAQAQACIEAHVRQQPAAPYYMAQAILVQEAAIKRLDEQNKQLEAELKQARAQAEAARAGSAPSNGGGGFLSSIFGSSGRNAAPAVQPQRPAAAPVASGGGWREPSAPGFSQPQAQQPGFGAAPARSGASSFLGGAMQTAAGVAGGVLLAQGISSLFNHNSQPEEVVEVIKEEPAPASDSGGWNDSGAQQQVADNSGWGSDQGGYADSDYGSDDGGFFSDDDSYV
>NZ_CP045553.1|WP_015271920.1|5226828_5227308_-|NYN-domain-containing-protein
MKKIALFADVQNLYYTVRQAHGCHFNYTALWADVSSEGQIVEAVAYAIDRGDSKQQQFQQILRNLGFDVRLKPFIQRSDGSAKGDWDVGITLDVIDAASRVDQVVLASGDGDFDLLLERVIQRHGTEAVVYGVPGLTALSLIRAATRYVPIEGALLLKH
>NZ_CP045553.1|WP_039613572.1|5226213_5226819_-|3'-5'-exonuclease
MERIAVIDFETTGISPGAGCRATEVAVVMLEGGRIVERYQSLMNAGVPVPAFVAGLTGITTAMLRSAPPVDKVMNEVAEFVGGTPLLAHNAAFDQKFWDYELGRIGRSRSQAFACSLLLSRRLLPAAPNHKLGTLTRWAGLPDTGTAHRAMADAEMAANLLQHLAGVLRQGHGVQQLSHDLLCRLQKTPAAKVRETLARFC
>NZ_CP045553.1|WP_015271918.1|5225767_5226217_+|Lrp/AsnC-family-transcriptional-regulator
MDKYDRMLLAALLDNGRATFAQLARQVNLSAPAVAERVAKLEASGVITGYQAKVDMSKIGLPIQCVIELRLASHGNQQAYEALTQIPQLTECHRVTGDPCVIMQAAVGSMPELEELINRVAQFGFSKTSIILSSAVERRVPLAQLEKKP
>NZ_CP045553.1|WP_054573605.1|5224692_5225613_-|drug/metabolite-exporter-YedA
MPASRRFPLLLIGAFLALYLVWGSTYLFIRIGVESWPPMLMAGVRFLIAGGLLYGFLRWRGVPAPTWPQWRAAGAIGFLLLSCGNGGVTVAEHAGVASGVAALAVATVPLFTLLFGLLFGHRNSKLEWAGIALGLVGIGLLNLGSNLQASPIGAALIIFAAASWAFGSVWSKTLPLPQGPMASAAEMLVGGAVLLLGSALSGERMTQMPTAAGWGALAYLVLFGSILAFSAYMYLLKHVRPAAATSYAYVNPAVAVLLGIVFAGEQIGAEECVAMAVIIGAVVLIGLPQWRKAPEPAQPLKGEICK
>NZ_CP045553.1|WP_013974320.1|5223305_5224637_-|DEAD/DEAH-box-helicase
MNFAKLGLIEPLLRTLQQLDYTTPTPVQAKAIPAVLAGRDLMAAAQTGTGKTAGFALPVLQRLALEGEKVASNSIRALVLVPTRELAEQVHNNVREYAENLPLSTYAVYGGVSINPQMMRLRRGVDLLVATPGRLLDLFRQNAVKFNQVQTLVLDEADRMLDLGFAEELQSVYAALPRKRQTLLFSATFSDQIRMLAGLALNDPLSIEVSPRNATATSVKQWLVPVDKKRKVDLFCHLLRKQRWKQVLVFAKTRNGVDQLVERLLAEGVNADGIHGDRPQATRQRALDSFKAREIQVLVATDVAARGLDIDDLPLVVNLDLPIVAEDYVHRIGRTGRAGNKGEAISLVCADEVQLLAAIEVLTRQTLPRHEEPDFIPDHRVPMTDASGQVIKKPKKPKKPKENSAKRGLGRWMDSAESGSAEPAVKAVRKVPSFNGGARKRKP
>NZ_CP045553.1|WP_015271926.1|5233252_5234038_-|hypothetical-protein
MKSRIWQLAGVGVLGLSISLGAMAEGPGEGAPGRSLNSRDEVQQTQPPRQGYYQDIPRRHGDNRHGEAGGPGQRPGGDWQGRPDGHGNGWGPGPQYRPGHTIDHFPDRYWKVPYRGDDYFYSGGYWYRPHGGRYVVVSPPYGVRVDYLPPYAREVWLGGALFFLVADTYYQYLADSREYVVVNPPVAAPAPVGGGYDVVAYPMYGQGQEQQDQDRYQCHRWAVSQSGFDPATAAYAPPANVADNYRRALGACFSGRGYSIN
>NZ_CP045553.1|WP_003249795.1|5234432_5234909_+|Lrp/AsnC-family-transcriptional-regulator
MSKLDRYDLSILAELQRDARISNQELAERIGLSPSPCSRRVKQLEDDGYISRQVALLDRKKLGLSLTAYVLIGMDRHTPERFETFEAAIRNLPQVLECSLVTGMDADYQLKVVVPDMDHYQKLLLGSLTRIEGVTSVRSSFVLNQVLASTELPLTHLR
>NZ_CP045553.1|WP_013974331.1|5234963_5235167_+|DUF2788-domain-containing-protein
MDPAVFEEWMMIILVTVLIGFMGFIVWDLAKKSKAGRFGTLILFFVLGLGVLAFIIKSVVVGFLEGV
>NZ_CP045553.1|WP_161551539.1|5235303_5235846_-|pseudouridine-synthase
MILFNKPFDVLTQFSDGDGRATLKDYIDIPGVYPAGRLDRDSEGLLLLTNDGGLQARIADPKHKLAKTYWVQVEGEPSEEQLQRLRDGVELNDGPTLPAEARHLDEPELWPRNPPVRFRKSVPTSWLELVIREGRNRQVRRMTAAVGLPTLRLVRVRIGDWALDGLEQGCWREVPAKLQR
>NZ_CP045553.1|WP_015271928.1|5235948_5237412_-|AMP-nucleosidase
MSQAFVVVDTPEQAVDRLAALHDQATGALSQALKRYLKDRTEPGAEERDLFRYPALRLTYYSHGEVAATTRAYAKVQVAGTYSVTITQPAAFRGYLLEQLRPLMHDYTVTVEVGVSEQNIPYPYVVDQGDELAGSGITAAQLARVFPSTDLSAATDNIADGLYDWGSAETLPLALFDAARVDFSLRRLVHYTGSDWRHVQPWILLTNYHRYVDQFISHGLDQLRDDPRFVRMVLPGNVVIEKGMDHGETQALVASVVWHRYQMPAYHLIAADGDGVTLVNIGVGPSNAKNITDHLAVLRPHCWLMIGHCGGLRQSQTIGDYVLAHAYMRRDGILDRVVPPNIPIPALAEVQLALQEAAAQVTGERGEQLKKRLRTGTVLTYDDRNWELRWAQERPLINLSRAVAVDMESGTIAAQGYRLRVPYGTLLCVSDKPLHSEIKLPGSANAFYNRAVSQHLKIGIAALDLLRTELNSLHSRKLRSFDEPPFR
>NZ_CP045553.1|WP_054573600.1|5237627_5239280_-|acyl-CoA-dehydrogenase-family-protein
MNLHQYAETHEVTNQPPPLDGANLYRLDLPLQEWSRRFGAGWAESRIDAYGALAGGPLMQAGFLANAHKPEFSSHDRYGHRIDLVEFHPAYHELMRTAVEHGLPSLPWAEPRPGAHVARASMTYLHSQAEAGTGCPLTMTFAAVPALRLQPELAEYWLPKILACEYDPRNVGDRHKAGVTLGMAMTEKQGGTDVRANTTRAYPVGAAGPGQAYELVGHKWFCSAPMCDAFLTLAQTEKGLSCFLLPRHRPDDSRNQFYIQRLKNKLGNSSNASSEVEFRGALAWMVGEEGRGVPTIIEMVAMTRFDCMVGSSALMRQALTQATHHCAHRKVGGRLLSEQPLMQNVLADLALESEAALALSLRMGQALEQLEDPQQAHFARLVTAVGKYWICKRAPAMINEAAECLGGAGYVEDSILPRLYREAPVNSTWEGSGNVQCLDVLRALSKEPGVLDALFAELGDGHGDPRLAAHIGNLKGAFADTGDMQYRARQLTEDIALALQAKLLLEAGNAVVSDAFIDSRLTGGGRVYGALPRGVDVEALVARATPTQDL
>NZ_CP045553.1|WP_054573599.1|5239436_5241425_-|hybrid-sensor-histidine-kinase/response-regulator
MRYLLIVLLGLLPVLAGAVDFDAATRHLPLGKAMQVYEDPDGSASITQVSAPDFAKHFRPHHKDVLNAGYSTSVFWLKVELRPVAAPDAAPRQWLLELAYPPLDHLELYLPDGSGSYRLARRTGDALPYHSRQILQNNYLFELQLQPGQVTTAYLRLHSQGSVQAPLALWSAQAYMEEQPTRLYVLGMIYGVLLVMLVYNLFIYLSVRDVSYLYYILYIASFGFYQVSVNGAGVAYFWPDSPWWANASTPLFIGSAGLFGCQFARHFLQLGSISRAFDRLLQLLMLGGALVMVLAVTMRYGVALRMATVLALLFTVSIFAAGLYAWWRGLRVARWFIIAWTAFLLGGLVNTLMVLGYLPNVFITMYASQLGSALEVALLSLALADRINSLREQQAQALRETGRTLEQLNLQLARSNRLKDEFLASVTHELRTPMNGVIGSLELMHTLPMEAEMAQYHRTAVGSAQGMMDMVDAILTLSELQAGRLRAQPAPFSLRDLLQGVRAGYAGQALGKGLYLSLDIPADVPDGLQGDAQKLARCLGCLVDNGLKFTHQGGVMIQVRGRRVGPDDLALTFMVSDSGIGFDDLDQATLYQRFFQVDGSMTRRYGGLGIGLSICRQMGELLGAKLSHESTRGLGSRFELSLNMAIAQVQMSPHILQARQSL
>NZ_CP045553.1|WP_015271931.1|5241690_5242488_+|hydroxymethylpyrimidine/phosphomethylpyrimidine-kinase
MNIYSSRPVVLCLSGHDPSGGAGLQADIEALIAQGCHAAPAVTALTVQDTVNVSDFRVLDREWVLAQANAVLADSTVAAVKLGMLGSIEMVDTVAELLAAHPHLPLVCDPVLRAGGGGRLGKDEVGYALRERLLPLATIATPNLPEARILAELPEGTADECAEKLLPFCRHLLITGGHGDEDEIHNRLYSRDGQHHTWTCQRLPGSYHGSGCTLASALAGRLALGEQLESAVRSALDYTWRTLRDAEQLGKGQFVPRRLPLDFCS
>NZ_CP045553.1|WP_054573598.1|5242501_5243125_+|thiamine-phosphate-synthase
MKLRGLYAITDSQLLAGRFLSHVEAALEGGVCLLQYRDKSDDAARRLREAEGLMQLCERYGTQLIINDDAELAARLGVGVHLGQTDGPLTPARALLGRQAIIGSTCHASLELAAQAASEGASYVAFGRFFNSVTKPGAPAANIELLEQARAQVKLPITVIGGITLDNAAPLVAHGADLLAVIHGLFGADSAQEVTRRARAFNALFAS
>NZ_CP045553.1|WP_013974339.1|5243140_5244424_+|glutamate-1-semialdehyde-2,1-aminomutase
MSRSEALFAQAQKHIPGGVNSPVRAFKSVGGTPLFFKHAEGAYVVDEDDKRYVDYVGSWGPMILGHGHPEVLDSVRRQLEHGLSYGAPTAMETEMADLVCSLVPSMEMVRMVSSGTEATMSAIRLARGYTGRDAIIKFEGCYHGHSDSLLVKAGSGLLTQGVPSSAGVPADFAKHTLTLPFNDIAAVEKTLAEVGQTVACIIVEPVAGNMNCVPPAPGFLEGLREQCDKHGVVLIFDEVMTGFRVSLGGAQGHYGIKPDLSTFGKIVGGGMPVGCFGGKREIMGCIAPLGPVYQAGTLSGNPLAMAAGLTTLKLISRPGFHAELTDYTSRMLDGLQQRADAAGVPFVTTQAGAMFGLYFSGADDIVTFEDVMASDAERFKRFFHLMLDGGVYLAPSAFEAGFTSIAHGDKELQITLDAAEKAFAALK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP045553_1	1.1\|4206776\|31\|NZ_CP045553\|CRISPRCasFinder	4206776-4206806	31	NZ_CP046163	Vibrio sp. THAF191c plasmid pTHAF191c_b, complete sequence	684810-684840	10	0.677
NZ_CP045553_1	1.1\|4206776\|31\|NZ_CP045553\|CRISPRCasFinder	4206776-4206806	31	NZ_CP046066	Vibrio sp. THAF191d plasmid pTHAF191d_b, complete sequence	868787-868817	10	0.677
NZ_CP045553_1	1.1\|4206776\|31\|NZ_CP045553\|CRISPRCasFinder	4206776-4206806	31	NZ_CP045356	Vibrio sp. THAF64 plasmid pTHAF64_a, complete sequence	891708-891738	10	0.677

1. spacer 1.1|4206776|31|NZ_CP045553|CRISPRCasFinder matches to NZ_CP046163 (Vibrio sp. THAF191c plasmid pTHAF191c_b, complete sequence) position: , mismatch: 10, identity: 0.677

tgttcgccttgacgctttctgcgcctatgaa	CRISPR spacer
caaacgccatgacgttttctgcgcctaattc	Protospacer
..  **** *****.************

2. spacer 1.1|4206776|31|NZ_CP045553|CRISPRCasFinder matches to NZ_CP046066 (Vibrio sp. THAF191d plasmid pTHAF191d_b, complete sequence) position: , mismatch: 10, identity: 0.677

tgttcgccttgacgctttctgcgcctatgaa	CRISPR spacer
caaacgccatgacgttttctgcgcctaattc	Protospacer
..  **** *****.************

3. spacer 1.1|4206776|31|NZ_CP045553|CRISPRCasFinder matches to NZ_CP045356 (Vibrio sp. THAF64 plasmid pTHAF64_a, complete sequence) position: , mismatch: 10, identity: 0.677

tgttcgccttgacgctttctgcgcctatgaa	CRISPR spacer
caaacgccatgacgttttctgcgcctaattc	Protospacer
..  **** *****.************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

334484 : 395736

Bacillus_phage(25.0%)

protease,holin,bacteriocin

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_169774668.1\|334484_334934_-\|protease	ATP-dependent zinc protease	NA	NA	NA	NA
WP_013970457.1\|335076_335478_+	RNA-binding protein S4	NA	NA	NA	NA
WP_015268603.1\|335672_336467_-	phosphatase PAP2 family protein	NA	NA	NA	NA
WP_015268604.1\|336589_337489_+	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA
WP_015268605.1\|337668_339210_+	phosphoenolpyruvate carboxykinase	A0A2H4PQN1	Staphylococcus_phage	1.5e-125	46.9
WP_015268606.1\|339386_339827_+	acyl-CoA thioesterase	NA	NA	NA	NA
WP_015268607.1\|339882_340365_-	hypothetical protein	NA	NA	NA	NA
WP_015268608.1\|340682_343028_-	FdhF/YdeP family oxidoreductase	NA	NA	NA	NA
WP_015268609.1\|343033_343864_-	formate dehydrogenase accessory sulfurtransferase FdhD	NA	NA	NA	NA
WP_054573391.1\|344049_344490_+	peptidoglycan-binding protein LysM	NA	NA	NA	NA
WP_054573392.1\|344602_345265_-	GMP/IMP nucleotidase	NA	NA	NA	NA
WP_015268611.1\|345329_345896_+	ADP compounds hydrolase NudE	NA	NA	NA	NA
WP_054573393.1\|345892_346711_+	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA
WP_015268613.1\|346924_347380_-	YiiD C-terminal domain-containing protein	NA	NA	NA	NA
WP_015268614.1\|347379_348786_-	sigma-54-dependent Fis family transcriptional regulator	W8CYM9	Bacillus_phage	3.9e-08	28.7
WP_054573394.1\|348782_350597_-	sensor histidine kinase	NA	NA	NA	NA
WP_015268616.1\|350639_351185_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	9.3e-51	54.5
WP_054573395.1\|351464_352571_+	agmatine deiminase	M1I1E2	Acanthocystis_turfacea_Chlorella_virus	6.6e-104	50.8
WP_054573662.1\|353087_355166_-	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_015268619.1\|355668_356988_+	OprD family porin	NA	NA	NA	NA
WP_054573663.1\|357105_358773_-	FMN-binding glutamate synthase family protein	NA	NA	NA	NA
WP_054573712.1\|359013_360381_-	HAMP domain-containing protein	NA	NA	NA	NA
WP_054573664.1\|360382_361102_-	response regulator	W8CYM9	Bacillus_phage	3.2e-30	34.1
WP_054573665.1\|361242_363540_+	TonB-dependent siderophore receptor	NA	NA	NA	NA
WP_015268624.1\|363821_364028_-	DUF3079 domain-containing protein	NA	NA	NA	NA
WP_015268625.1\|364354_364603_-	hypothetical protein	NA	NA	NA	NA
WP_015268626.1\|365165_365441_+	DUF3077 domain-containing protein	NA	NA	NA	NA
WP_054573666.1\|365792_366998_-	methyltransferase	NA	NA	NA	NA
WP_015268628.1\|367126_367816_-	ABC transporter permease	NA	NA	NA	NA
WP_013970485.1\|367815_368508_-	ABC transporter permease	NA	NA	NA	NA
WP_015268630.1\|368562_369318_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003257472.1\|369329_370103_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	8.4e-21	32.0
WP_013970487.1\|370767_372153_+	GABA permease	NA	NA	NA	NA
WP_013970488.1\|372333_372777_-	hypothetical protein	NA	NA	NA	NA
WP_161551498.1\|372834_373707_-	polyphosphate kinase 2	NA	NA	NA	NA
WP_054573667.1\|374058_374361_+	putative addiction module antidote protein	A4JWV1	Burkholderia_virus	1.3e-14	50.0
WP_003257478.1\|374665_374938_-	oxidative damage protection protein	NA	NA	NA	NA
WP_015268633.1\|374934_376002_-	A/G-specific adenine glycosylase	NA	NA	NA	NA
WP_054573668.1\|375998_378245_-	AsmA family protein	NA	NA	NA	NA
WP_054573669.1\|378550_380212_+	OFA family MFS transporter	NA	NA	NA	NA
WP_003255736.1\|380495_381089_+	imidazoleglycerol-phosphate dehydratase HisB	NA	NA	NA	NA
WP_013970493.1\|381089_381728_+	imidazole glycerol phosphate synthase subunit HisH	NA	NA	NA	NA
WP_003257483.1\|381728_381989_+	DUF2164 domain-containing protein	NA	NA	NA	NA
WP_015268636.1\|382016_382754_+	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	NA	NA	NA	NA
WP_013970495.1\|382764_383535_+	imidazole glycerol phosphate synthase subunit HisF	NA	NA	NA	NA
WP_003257485.1\|383655_384834_-\|holin	choline ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.9e-24	36.2
WP_169774667.1\|384830_385679_-\|holin	choline ABC transporter permease subunit	NA	NA	NA	NA
WP_015268637.1\|385760_386708_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_015268638.1\|387161_388538_+	L-serine ammonia-lyase	NA	NA	NA	NA
WP_015268639.1\|388995_390102_+	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_003257487.1\|390220_390478_-	hypothetical protein	NA	NA	NA	NA
WP_054573671.1\|390845_391322_-	thioesterase family protein	NA	NA	NA	NA
WP_139657352.1\|391332_392298_-	L-carnitine dehydrogenase	NA	NA	NA	NA
WP_015268642.1\|392316_393201_-	3-keto-5-aminohexanoate cleavage protein	NA	NA	NA	NA
WP_015268643.1\|393326_394271_-\|holin	choline ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_015268644.1\|394418_395363_+	GlxA family transcriptional regulator	NA	NA	NA	NA
WP_015268645.1\|395484_395736_-\|bacteriocin	bacteriocin immunity protein	NA	NA	NA	NA

DBSCAN-SWA_2

788533 : 828555

Enterobacteria_phage(22.22%)

integrase,transposase

attL 809130:809144|attR 830326:830340

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_099593723.1\|788533_789718_+\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	3.2e-120	54.1
WP_157765891.1\|789747_790497_+	hypothetical protein	NA	NA	NA	NA
WP_099593719.1\|790612_790816_+	AlpA family transcriptional regulator	NA	NA	NA	NA
WP_099593717.1\|790818_791730_+	TrfA protein	NA	NA	NA	NA
WP_009405708.1\|792665_792983_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
WP_009405710.1\|792979_793315_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA
WP_099593710.1\|795419_795656_-	broad-spectrum mercury transporter MerE	NA	NA	NA	NA
WP_099593707.1\|795648_796011_-	mercuric resistance transcriptional repressor protein MerD	NA	NA	NA	NA
WP_099593705.1\|796010_796427_-	hypothetical protein	NA	NA	NA	NA
WP_099593703.1\|796447_798130_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	1.2e-35	26.7
WP_099593701.1\|798164_798599_-	organomercurial transporter MerC	NA	NA	NA	NA
WP_099593699.1\|798611_798890_-	mercury resistance system periplasmic binding protein MerP	A0A218MNH0	uncultured_virus	2.6e-09	47.8
WP_099593697.1\|798903_799254_-	mercuric ion transporter MerT	NA	NA	NA	NA
WP_099593695.1\|799325_799745_+	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_157765890.1\|801458_801905_+	hypothetical protein	NA	NA	NA	NA
WP_172959809.1\|801987_803901_+	CHASE domain-containing protein	G3MA91	Bacillus_virus	1.6e-20	35.0
WP_099593687.1\|804480_805350_-	sterol desaturase family protein	NA	NA	NA	NA
WP_099593685.1\|805418_806165_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_099593683.1\|806161_806674_-	lipoprotein signal peptidase	NA	NA	NA	NA
WP_099593681.1\|806670_807018_-	DUF3703 domain-containing protein	NA	NA	NA	NA
WP_099593679.1\|807328_807742_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_173895560.1\|807842_808736_+	cation transporter	NA	NA	NA	NA
WP_099593675.1\|809122_810094_-	ExeA family protein	NA	NA	NA	NA
809130:809144	attL	NA	NA	NA	NA
WP_099593673.1\|810083_811745_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_110765430.1\|811725_812301_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	1.2e-43	54.9
WP_000845048.1\|812602_813616_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_003108247.1\|813782_814583_+	subclass B1 metallo-beta-lactamase VIM-2	NA	NA	NA	NA
WP_001261740.1\|814670_815462_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
WP_000846390.1\|815496_816297_+	oxacillin-hydrolyzing class D beta-lactamase OXA-10	NA	NA	NA	NA
WP_032488579.1\|816328_816883_+	aminoglycoside N-acetyltransferase AAC(6')-Ib3	NA	NA	NA	NA
WP_003155741.1\|817045_817669_-	recombinase family protein	A0A0C4UR34	Shigella_phage	1.7e-35	47.6
WP_173895562.1\|817730_818948_-	TniQ family protein	NA	NA	NA	NA
WP_173895564.1\|818944_819853_-	TniB family NTP-binding protein	NA	NA	NA	NA
WP_000179844.1\|819855_821535_-\|integrase,transposase	DDE-type integrase/transposase/recombinase	NA	NA	NA	NA
WP_009405714.1\|822326_822632_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_029380191.1\|822642_823848_-	chromate efflux transporter	NA	NA	NA	NA
WP_157765889.1\|824654_824888_-	hypothetical protein	NA	NA	NA	NA
WP_099594188.1\|824884_825769_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_099593658.1\|825803_826046_-	hypothetical protein	NA	NA	NA	NA
WP_074198791.1\|826267_827023_-	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	2.7e-72	54.4
WP_074198792.1\|827040_828555_-\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	1.4e-144	52.8
830326:830340	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1161632 : 1169411

Thermobifida_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_013971076.1\|1161632_1162487_-	RNase adapter RapZ	A0A0R8VB27	Thermobifida_phage	6.2e-09	32.8
WP_015269060.1\|1162489_1162954_-	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA
WP_003255135.1\|1162966_1163275_-	ribosome-associated translation inhibitor RaiA	A0A0K1LP60	Escherichia_phage	4.4e-05	34.1
WP_054573146.1\|1163354_1164848_-	RNA polymerase factor sigma-54	NA	NA	NA	NA
WP_015269062.1\|1165023_1165749_-	LPS export ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.9e-23	27.0
WP_015269063.1\|1165749_1166274_-	lipopolysaccharide transport periplasmic protein LptA	NA	NA	NA	NA
WP_003257918.1\|1166260_1166833_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA
WP_015269064.1\|1166841_1167366_-	HAD family hydrolase	A0A140XBD6	Dickeya_phage	2.4e-27	47.8
WP_003257920.1\|1167378_1168353_-	KpsF/GutQ family sugar-phosphate isomerase	A0A2P0VNK5	Tetraselmis_virus	3.6e-37	33.1
WP_012270662.1\|1168601_1169411_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	4.5e-25	32.5

DBSCAN-SWA_4

1378344 : 1461328

Pseudomonas_phage(33.33%)

holin,integrase,terminase,tail,portal,protease,head,capsid,tRNA

attL 1406921:1406940|attR 1462009:1462028

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_054573193.1\|1378344_1379697_+\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
WP_013971256.1\|1379771_1382132_+	outer membrane protein assembly factor BamA	NA	NA	NA	NA
WP_015269197.1\|1382176_1382680_+	OmpH family outer membrane protein	NA	NA	NA	NA
WP_013971258.1\|1382681_1383737_+	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	NA	NA	NA	NA
WP_004375427.1\|1383851_1384292_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA
WP_015269198.1\|1384288_1385065_+	acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA	NA	NA	NA
WP_015269199.1\|1385066_1386194_+	lipid-A-disaccharide synthase	NA	NA	NA	NA
WP_013971261.1\|1386195_1386819_+	ribonuclease HII	R4THQ2	Phaeocystis_globosa_virus	5.0e-16	32.9
WP_054573192.1\|1387006_1390531_+	DNA polymerase III subunit alpha	A0A1C9LWZ5	Streptomyces_phage	2.6e-194	35.9
WP_015269200.1\|1390637_1391585_+	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA
WP_054573191.1\|1391723_1393007_+\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
WP_004375437.1\|1393276_1394905_+	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	1.2e-157	52.9
WP_015269202.1\|1394908_1395754_+	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	6.5e-51	42.0
WP_015269203.1\|1395907_1397197_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	9.7e-139	59.4
WP_004375443.1\|1397365_1397647_+	cell division protein FtsB	NA	NA	NA	NA
WP_015269204.1\|1397643_1398351_+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	NA	NA	NA	NA
WP_015269205.1\|1398420_1399317_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_013971270.1\|1399424_1400537_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	E3SJ82	Synechococcus_phage	8.0e-33	29.5
WP_054573190.1\|1400545_1401400_+	S-formylglutathione hydrolase	NA	NA	NA	NA
WP_015269207.1\|1401601_1402075_+	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	NA	NA	NA	NA
WP_015269208.1\|1402071_1403130_+\|tRNA	tRNA pseudouridine(13) synthase TruD	NA	NA	NA	NA
WP_013971274.1\|1403117_1403867_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	4.4e-67	52.2
WP_015269209.1\|1403902_1404541_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.7e-40	51.2
WP_054573189.1\|1404761_1405619_+	peptidoglycan DD-metalloendopeptidase family protein	I3PV79	Clostridium_phage	1.9e-13	36.2
WP_013971277.1\|1405727_1406735_+	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	5.0e-34	35.8
1406921:1406940	attL	NA	NA	NA	NA
WP_004375459.1\|1407352_1407676_-	ferredoxin family protein	NA	NA	NA	NA
WP_173895615.1\|1407816_1410390_-	DNA mismatch repair protein MutS	A0A1V0SGG8	Hokovirus	9.9e-26	22.6
WP_084296974.1\|1410533_1411208_+	hypothetical protein	NA	NA	NA	NA
WP_173895617.1\|1411453_1412467_-\|integrase	tyrosine-type recombinase/integrase	A0A1B0VP19	Pseudomonas_phage	3.7e-125	68.9
WP_039614784.1\|1412482_1412674_-	DUF4224 domain-containing protein	A0A1B0VMB6	Pseudomonas_phage	1.4e-17	62.9
WP_173895619.1\|1412712_1413189_-	hypothetical protein	A0A1B0VM52	Pseudomonas_phage	1.2e-33	57.5
WP_173895621.1\|1413251_1413512_-	hypothetical protein	NA	NA	NA	NA
WP_173895623.1\|1413555_1413930_-	hypothetical protein	A0A2H4J8S0	uncultured_Caudovirales_phage	3.0e-16	89.4
WP_173895625.1\|1413926_1414322_-	DUF2591 domain-containing protein	A0A1B0VMD7	Pseudomonas_phage	1.6e-15	40.9
WP_173895627.1\|1414318_1414642_-	hypothetical protein	A0A2H4J0N7	uncultured_Caudovirales_phage	2.0e-53	92.5
WP_173895629.1\|1414638_1414992_-	DUF4884 domain-containing protein	A0A2H4J399	uncultured_Caudovirales_phage	5.5e-12	44.4
WP_173895631.1\|1414988_1415318_-	hypothetical protein	A0A023NGB2	Nitrincola_phage	2.5e-22	47.9
WP_173895633.1\|1415400_1416558_-	RNA-directed DNA polymerase	A0A0N7AE80	Bacillus_phage	1.2e-44	34.2
WP_173895635.1\|1417163_1417736_-	DUF1566 domain-containing protein	A0A0A0YR68	Pseudomonas_phage	1.3e-26	44.9
WP_173895636.1\|1417852_1418329_-	hypothetical protein	H2BDH2	Pseudomonas_virus	1.4e-31	51.3
WP_173895638.1\|1418739_1419237_-	single-stranded DNA-binding protein	I3PGW4	Xanthomonas_phage	2.2e-46	69.2
WP_173895640.1\|1419233_1419572_-	hypothetical protein	NA	NA	NA	NA
WP_173895642.1\|1419590_1419974_-	helix-turn-helix transcriptional regulator	A0A2H4JA92	uncultured_Caudovirales_phage	2.3e-24	63.0
WP_021782745.1\|1420216_1420435_+	hypothetical protein	NA	NA	NA	NA
WP_173895644.1\|1420421_1420583_-	hypothetical protein	NA	NA	NA	NA
WP_008099710.1\|1420913_1421591_-	helix-turn-helix domain-containing protein	A0A2H4J8I0	uncultured_Caudovirales_phage	4.6e-39	56.0
WP_173895646.1\|1421693_1421930_+	helix-turn-helix transcriptional regulator	A0A2H4JEY0	uncultured_Caudovirales_phage	4.2e-16	53.8
WP_173896063.1\|1422269_1422956_+	helix-turn-helix domain-containing protein	A0A1B0YZZ0	Pseudomonas_phage	1.4e-27	59.8
WP_173895648.1\|1422948_1424328_+	replicative DNA helicase	H2BD70	Pseudomonas_phage	2.0e-118	51.9
WP_173895650.1\|1424324_1424753_+	VRR-NUC domain-containing protein	A0A2D1GNH3	Pseudomonas_phage	1.8e-49	75.0
WP_173895652.1\|1424749_1426048_+\|integrase	site-specific integrase	A0A2D1GND4	Pseudomonas_phage	6.3e-122	54.6
WP_135002667.1\|1426044_1426365_+	hypothetical protein	A0A2D1GNG3	Pseudomonas_phage	1.1e-27	60.6
WP_121757708.1\|1426376_1426718_+	antitermination protein Q	A0A2D1GNB4	Pseudomonas_phage	4.6e-48	80.7
WP_054892292.1\|1426917_1427241_+\|holin	phage holin, lambda family	A0A1W6JTC7	Pseudomonas_phage	1.0e-28	64.2
WP_173895654.1\|1427240_1427579_+	HNH endonuclease	C4ML58	Xanthomonas_virus	2.5e-22	47.7
WP_173895657.1\|1427737_1428283_+\|terminase	terminase small subunit	S4TNN3	Salmonella_phage	3.3e-16	36.8
WP_173895659.1\|1428279_1429968_+\|terminase	terminase large subunit	A0A2H4JDK9	uncultured_Caudovirales_phage	2.9e-252	81.3
WP_173895661.1\|1429970_1431182_+\|portal	phage portal protein	A0A2H4JFN7	uncultured_Caudovirales_phage	1.2e-170	74.0
WP_173895663.1\|1431168_1431810_+\|head,protease	HK97 family phage prohead protease	A0A2H4JA51	uncultured_Caudovirales_phage	3.0e-88	74.6
WP_173895664.1\|1431806_1433003_+\|capsid	phage major capsid protein	A0A2H4J8D1	uncultured_Caudovirales_phage	1.3e-145	64.7
WP_015271424.1\|1433052_1433271_+	hypothetical protein	A0A2H4JG33	uncultured_Caudovirales_phage	8.9e-05	44.3
WP_173895666.1\|1433270_1433570_+\|head,tail	phage gp6-like head-tail connector protein	A0A2H4J8C5	uncultured_Caudovirales_phage	3.5e-36	74.7
WP_173895668.1\|1433569_1433896_+\|head	phage head closure protein	A0A2D1GNG1	Pseudomonas_phage	3.9e-28	64.6
WP_173895670.1\|1433904_1434081_+	hypothetical protein	NA	NA	NA	NA
WP_173895672.1\|1434084_1434660_+	HK97 gp10 family phage protein	A0A2D1GNN2	Pseudomonas_phage	8.0e-53	56.3
WP_173895674.1\|1434652_1435039_+	DUF3168 domain-containing protein	A0A2D1GNT4	Pseudomonas_phage	5.8e-55	83.6
WP_173895676.1\|1435094_1435595_+	hypothetical protein	A0A2D1GNF2	Pseudomonas_phage	1.4e-74	84.7
WP_173895678.1\|1435634_1435964_+	hypothetical protein	A0A2D1GNT5	Pseudomonas_phage	1.6e-26	57.8
WP_173896065.1\|1436005_1436215_+	hypothetical protein	A0A2D1GNK2	Pseudomonas_phage	8.6e-13	68.6
WP_173895680.1\|1436264_1436900_+	hypothetical protein	NA	NA	NA	NA
WP_173895682.1\|1436953_1440178_+\|tail	phage tail tape measure protein	A0A2D1GNQ1	Pseudomonas_phage	1.6e-94	39.1
WP_103462142.1\|1440223_1440808_+	hypothetical protein	A0A2H4IYI9	uncultured_Caudovirales_phage	1.2e-56	54.1
WP_173895684.1\|1440807_1441413_+	hypothetical protein	A0A059VA31	Pseudomonas_phage	4.8e-88	77.3
WP_173895686.1\|1441415_1441814_+	hypothetical protein	A0A2H4IYI8	uncultured_Caudovirales_phage	7.5e-58	75.0
WP_173895687.1\|1441810_1444990_+	DUF1983 domain-containing protein	A0A2H4J0B1	uncultured_Caudovirales_phage	0.0e+00	76.6
WP_173895689.1\|1444989_1446045_+	hypothetical protein	A0A2H4JA10	uncultured_Caudovirales_phage	3.9e-154	75.5
WP_173895691.1\|1446053_1446641_+	hypothetical protein	A0A2H4J1J6	uncultured_Caudovirales_phage	1.6e-24	43.2
WP_173895693.1\|1446643_1447195_+\|tail	tail fiber assembly protein	A0A2H4J9Z7	uncultured_Caudovirales_phage	9.5e-19	66.7
WP_173895695.1\|1447252_1447705_+	structural protein P5	A0A2R3UAM8	Myoviridae_environmental_samples	3.4e-38	58.2
WP_173895697.1\|1447701_1448082_+	ammonia monooxygenase	G8GWD9	Rhodobacter_phage	1.6e-28	51.3
WP_173895699.1\|1448066_1448579_+	DUF2514 family protein	NA	NA	NA	NA
WP_173895701.1\|1448592_1448802_+	hypothetical protein	A0A2H4JG60	uncultured_Caudovirales_phage	8.0e-11	60.0
WP_039615154.1\|1448921_1449230_+	hypothetical protein	A0A2H4JER5	uncultured_Caudovirales_phage	7.6e-34	70.5
WP_173895702.1\|1449219_1449435_+	hypothetical protein	A0A2H4J7A7	uncultured_Caudovirales_phage	3.6e-06	41.8
WP_015269212.1\|1449934_1450588_+	hypothetical protein	NA	NA	NA	NA
WP_015269213.1\|1450783_1451266_+	CinA family protein	B5TK85	Pseudomonas_phage	7.4e-60	78.0
WP_015269214.1\|1451369_1452437_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	6.4e-112	62.0
WP_054573188.1\|1452458_1452929_+	recombination regulator RecX	NA	NA	NA	NA
WP_015269216.1\|1452978_1454097_-	LOG family protein	NA	NA	NA	NA
WP_004375471.1\|1454259_1454469_+	hypothetical protein	NA	NA	NA	NA
WP_013971343.1\|1454483_1454903_-	quorum-sensing-regulated virulence factor family protein	NA	NA	NA	NA
WP_173895704.1\|1455123_1455834_+	DTW domain-containing protein	NA	NA	NA	NA
WP_015269217.1\|1455912_1456563_+	response regulator transcription factor	NA	NA	NA	NA
WP_015269218.1\|1456636_1457002_+	diacylglycerol kinase	NA	NA	NA	NA
WP_004375481.1\|1456998_1457925_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_004375483.1\|1458046_1458826_+	ferredoxin--NADP reductase	NA	NA	NA	NA
WP_013971347.1\|1459014_1459509_-\|protease	SprT family zinc-dependent metalloprotease	NA	NA	NA	NA
WP_003252385.1\|1459641_1460241_-	YIP1 family protein	NA	NA	NA	NA
WP_012270926.1\|1460503_1461328_+\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	1.5e-105	71.6
1462009:1462028	attR	NA	NA	NA	NA

DBSCAN-SWA_5

1567494 : 1640349

Pseudomonas_phage(41.46%)

terminase,holin,integrase,tail,portal,protease,head,capsid,transposase,tRNA

attL 1562494:1562527|attR 1610933:1610966

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1562494:1562527	attL	NA	NA	NA	NA
WP_173895718.1\|1567494_1568685_-\|integrase	tyrosine-type recombinase/integrase	A0A1B0Z061	Pseudomonas_phage	4.9e-113	55.4
WP_012315790.1\|1568921_1569164_-	hypothetical protein	A0A1V0E8D1	Vibrio_phage	2.0e-05	49.1
WP_173895720.1\|1569153_1569711_-	HNH endonuclease	NA	NA	NA	NA
WP_173895722.1\|1569707_1569851_-	hypothetical protein	NA	NA	NA	NA
WP_173895724.1\|1569847_1570243_-	carbon storage regulator	NA	NA	NA	NA
WP_047594881.1\|1570328_1570808_-	hypothetical protein	NA	NA	NA	NA
WP_173895726.1\|1570807_1571374_-	hypothetical protein	A0A1B1PDB7	Escherichia_phage	1.1e-43	46.3
WP_173895728.1\|1571960_1572350_-	response regulator transcription factor	A0A1W6JTA9	Pseudomonas_phage	1.3e-22	53.2
WP_060709464.1\|1572473_1573253_-	S24 family peptidase	J7I0S2	Pseudomonas_phage	1.7e-21	35.3
WP_060709463.1\|1573351_1573687_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_173895730.1\|1573683_1574289_+	KilA-N domain-containing protein	NA	NA	NA	NA
WP_012313226.1\|1574703_1575009_+	hypothetical protein	NA	NA	NA	NA
WP_173895732.1\|1575005_1575242_+	hypothetical protein	A0A1B0VMK4	Pseudomonas_phage	7.2e-08	44.6
WP_173895734.1\|1575238_1575532_+	hypothetical protein	NA	NA	NA	NA
WP_173895736.1\|1575525_1575822_+	hypothetical protein	NA	NA	NA	NA
WP_173895738.1\|1575818_1576592_+	Rha family transcriptional regulator	A0A1V0E838	Vibrio_phage	3.2e-28	49.1
WP_015271444.1\|1576588_1576903_+	hypothetical protein	NA	NA	NA	NA
WP_015271443.1\|1576899_1577463_+	hypothetical protein	NA	NA	NA	NA
WP_015271442.1\|1577459_1577690_+	hypothetical protein	NA	NA	NA	NA
WP_173895740.1\|1577686_1578460_+	hypothetical protein	A0A2H4J580	uncultured_Caudovirales_phage	1.4e-23	60.0
WP_080604923.1\|1578626_1579265_+	ATP-binding protein	A0A2H4J2L2	uncultured_Caudovirales_phage	1.2e-44	48.3
WP_015271440.1\|1579261_1580674_+	AAA family ATPase	A0A0A0YUG7	Pseudomonas_phage	3.0e-186	74.7
WP_015271439.1\|1580660_1581167_+	hypothetical protein	NA	NA	NA	NA
WP_015271438.1\|1581163_1581463_+	hypothetical protein	A0A1W6JTC1	Pseudomonas_phage	1.7e-17	50.6
WP_015271437.1\|1581459_1582008_+	hypothetical protein	NA	NA	NA	NA
WP_015271436.1\|1582365_1582875_+	acyloxyacyl hydrolase	A0A2H4J0I5	uncultured_Caudovirales_phage	1.1e-85	95.3
WP_015271435.1\|1583191_1583380_-	hypothetical protein	NA	NA	NA	NA
WP_173895742.1\|1583497_1584319_+	hypothetical protein	NA	NA	NA	NA
WP_047594930.1\|1585192_1585516_+\|holin	phage holin, lambda family	A0A1W6JTC7	Pseudomonas_phage	1.3e-28	64.2
WP_123083831.1\|1585519_1585738_+	hypothetical protein	NA	NA	NA	NA
WP_052110538.1\|1585785_1586265_+	HNH endonuclease	I7HBD4	Xanthomonas_virus	1.7e-32	46.9
WP_173896069.1\|1586502_1586691_+	hypothetical protein	NA	NA	NA	NA
WP_009685291.1\|1586690_1587029_+	HNH endonuclease	B5WZZ4	Pseudomonas_phage	2.9e-26	51.9
WP_102059533.1\|1587178_1587652_+\|terminase	terminase small subunit	A0A2H4J8R0	uncultured_Caudovirales_phage	3.4e-17	41.5
WP_102059534.1\|1587648_1589346_+\|terminase	terminase large subunit	S4TSQ6	Salmonella_phage	3.5e-181	58.2
WP_102059535.1\|1589342_1590743_+\|portal	phage portal protein	A0A0U4IJ43	Pseudomonas_phage	9.3e-228	84.4
WP_102059536.1\|1590756_1591632_+\|protease	Clp protease ClpP	A0A0U4B0J0	Pseudomonas_phage	1.1e-112	72.5
WP_102059537.1\|1591646_1592861_+\|capsid	phage major capsid protein	A0A0U4JIW8	Pseudomonas_phage	1.1e-179	80.8
WP_102059538.1\|1592903_1593293_+	hypothetical protein	K7PHI6	Enterobacteria_phage	2.8e-09	64.4
WP_102059539.1\|1593296_1593773_+\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA
WP_102059553.1\|1593802_1594093_+\|head	phage head closure protein	A0A2D1GNG1	Pseudomonas_phage	5.3e-13	41.6
WP_102059540.1\|1594089_1594560_+	HK97 gp10 family phage protein	A4JX05	Burkholderia_virus	6.2e-27	47.0
WP_102059541.1\|1594564_1594912_+	DUF3168 domain-containing protein	Q6JIM2	Burkholderia_virus	2.1e-08	31.8
WP_102059542.1\|1594920_1595391_+	hypothetical protein	Q3HQT6	Burkholderia_phage	3.2e-31	47.7
WP_100413833.1\|1595390_1595858_+	hypothetical protein	NA	NA	NA	NA
WP_100413842.1\|1595881_1596178_+	DUF4035 domain-containing protein	Q4FAS6	Burkholderia_phage	1.3e-14	50.5
WP_121757750.1\|1596240_1596597_+	hypothetical protein	NA	NA	NA	NA
WP_158239720.1\|1596820_1600012_+	tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	9.3e-74	42.6
WP_100413835.1\|1600011_1600350_+\|tail	phage tail protein	A0A0R6PIG5	Moraxella_phage	6.5e-10	32.7
WP_100413836.1\|1600357_1601041_+\|tail	phage minor tail protein L	A0A1B0VNE0	Pseudomonas_phage	6.6e-54	44.1
WP_162998281.1\|1601037_1601814_+	Mov34/MPN/PAD-1 family protein	A0A2D1GNP8	Pseudomonas_phage	2.8e-69	49.8
WP_100413843.1\|1601819_1602410_+\|tail	tail assembly protein	F1C572	Cronobacter_phage	3.8e-42	49.5
WP_173895744.1\|1602465_1606191_+	DUF1983 domain-containing protein	A0A1B0VMH5	Pseudomonas_phage	0.0e+00	47.8
WP_173895746.1\|1606187_1607243_+	hypothetical protein	A0A2H4JA10	uncultured_Caudovirales_phage	5.5e-156	76.6
WP_173895747.1\|1607251_1607839_+	hypothetical protein	A0A2H4J1J6	uncultured_Caudovirales_phage	1.4e-23	42.7
WP_173895749.1\|1607841_1608384_+\|tail	tail fiber assembly protein	A0A2H4J9Z7	uncultured_Caudovirales_phage	1.8e-17	62.3
WP_173896071.1\|1608622_1608802_+	hypothetical protein	NA	NA	NA	NA
WP_173895751.1\|1608857_1609346_+	glycoside hydrolase family 104 protein	H2BD99	Pseudomonas_phage	1.9e-55	66.7
WP_173895753.1\|1609342_1609705_+	hypothetical protein	J7HXL1	Pseudomonas_phage	2.1e-19	53.7
WP_102082349.1\|1609988_1610513_-	hypothetical protein	NA	NA	NA	NA
WP_054573482.1\|1610988_1612953_-\|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	NA	NA	NA	NA
1610933:1610966	attR	NA	NA	NA	NA
WP_173895755.1\|1613106_1614600_+	polyphosphate:AMP phosphotransferase	NA	NA	NA	NA
WP_015269294.1\|1614855_1615821_+	DMT family transporter	NA	NA	NA	NA
WP_054573483.1\|1615952_1617347_-	class II fumarate hydratase	NA	NA	NA	NA
WP_003259051.1\|1617502_1618027_+	DUF2059 domain-containing protein	NA	NA	NA	NA
WP_003252644.1\|1618037_1618334_+	BolA family transcriptional regulator	NA	NA	NA	NA
WP_013971443.1\|1618560_1619493_+	rhodanese-related sulfurtransferase	NA	NA	NA	NA
WP_054573484.1\|1619496_1620129_+	DsbA family protein	NA	NA	NA	NA
WP_054573485.1\|1620121_1621954_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.3e-40	28.7
WP_054573486.1\|1622192_1624649_+	EAL domain-containing protein	A0A127AWB9	Bacillus_phage	3.5e-20	33.3
WP_015269299.1\|1624679_1625465_+	iron-containing redox enzyme family protein	NA	NA	NA	NA
WP_102083829.1\|1625586_1626327_-	YciK family oxidoreductase	NA	NA	NA	NA
WP_054573488.1\|1626419_1627091_-	N-acetylmuramic acid 6-phosphate phosphatase MupP	NA	NA	NA	NA
WP_003260863.1\|1627093_1627792_-	bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA	NA	NA	NA
WP_015269302.1\|1627903_1628980_+	S-methyl-5-thioribose-1-phosphate isomerase	NA	NA	NA	NA
WP_015269303.1\|1629538_1632304_+	DNA gyrase subunit A	G3M9Z5	Bacillus_virus	1.6e-98	43.1
WP_162491229.1\|1632571_1633657_+	3-phosphoserine/phosphohydroxythreonine transaminase	M1Q1P2	Streptococcus_phage	1.6e-89	48.5
WP_013971453.1\|1633656_1634751_+	prephenate dehydratase	NA	NA	NA	NA
WP_081013957.1\|1634929_1637170_+	bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_003260862.1\|1637166_1637853_+	(d)CMP kinase	NA	NA	NA	NA
WP_003252673.1\|1637977_1639654_+	30S ribosomal protein S1	NA	NA	NA	NA
WP_039614560.1\|1639893_1640349_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_6

2042549 : 2048684

Pseudomonas_phage(33.33%)

lysis

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_054572223.1\|2042549_2042825_-	pyocin activator PrtN family protein	I6NSR8	Burkholderia_phage	4.1e-23	58.3
WP_054572224.1\|2043155_2043710_+\|lysis	lysis protein	B5TK84	Pseudomonas_phage	8.6e-28	46.2
WP_054572225.1\|2043861_2044656_+	DNA adenine methylase	Q8W6S4	Burkholderia_virus	2.6e-102	68.6
WP_081013928.1\|2044580_2045345_-	SOS response-associated peptidase family protein	A0A2H4J991	uncultured_Caudovirales_phage	1.3e-53	48.0
WP_054572226.1\|2045447_2045876_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	4.8e-18	43.4
WP_081013930.1\|2047420_2048371_-	HEPN domain-containing protein	NA	NA	NA	NA
WP_054572229.1\|2048477_2048684_-	hypothetical protein	A0A2D1GNR5	Pseudomonas_phage	2.9e-05	39.7

DBSCAN-SWA_7

3795053 : 3803925

uncultured_Caudovirales_phage(75.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003251184.1\|3795053_3795725_+	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	2.1e-105	91.0
WP_013973275.1\|3796042_3797422_+	uracil-xanthine permease	H9YQ34	environmental_Halophage	1.6e-27	51.1
WP_054573031.1\|3797701_3798094_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	1.9e-53	79.8
WP_054573030.1\|3798095_3798455_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	8.9e-34	60.8
WP_054573029.1\|3798454_3798751_+	sulfurtransferase complex subunit TusB	A0A2H4JG28	uncultured_Caudovirales_phage	1.0e-27	63.6
WP_015270963.1\|3798747_3799083_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	1.7e-42	75.7
WP_015270964.1\|3799079_3800084_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	3.1e-153	79.2
WP_013973281.1\|3800176_3801136_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_013973282.1\|3801252_3802644_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_003258877.1\|3802644_3803925_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	2.6e-96	54.4

DBSCAN-SWA_8

4481687 : 4525338

Pseudomonas_phage(48.89%)

terminase,holin,integrase,tail,portal,protease,head,capsid,transposase

attL 4483334:4483393|attR 4523656:4523720

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_038410099.1\|4481687_4483049_+	Na+/H+ antiporter NhaA	A0A2H4J5W3	uncultured_Caudovirales_phage	4.8e-64	40.9
4483334:4483393	attL	NA	NA	NA	NA
WP_173895935.1\|4483590_4483917_+	hypothetical protein	NA	NA	NA	NA
WP_173895937.1\|4484021_4484744_+	hypothetical protein	NA	NA	NA	NA
WP_173895939.1\|4484865_4485432_+	hypothetical protein	NA	NA	NA	NA
WP_173895941.1\|4485474_4485972_-	DUF2514 domain-containing protein	A0A2H4J3Q6	uncultured_Caudovirales_phage	1.2e-41	76.2
WP_173895943.1\|4485968_4486457_-	glycoside hydrolase family 104 protein	Q9MC90	Pseudomonas_phage	1.7e-51	64.2
WP_173895945.1\|4486512_4486851_-\|tail	tail fiber assembly protein	A0A2H4J9Z7	uncultured_Caudovirales_phage	5.8e-19	66.7
WP_173895947.1\|4486903_4487062_-	hypothetical protein	NA	NA	NA	NA
WP_173895948.1\|4487064_4487652_-	hypothetical protein	A0A2H4J1J6	uncultured_Caudovirales_phage	1.0e-23	42.7
WP_054572334.1\|4487660_4488716_-	hypothetical protein	A0A2H4JA10	uncultured_Caudovirales_phage	1.9e-156	76.9
WP_173895950.1\|4488712_4491919_-	DUF1983 domain-containing protein	A0A2H4J0B1	uncultured_Caudovirales_phage	0.0e+00	81.4
WP_103462627.1\|4491918_4492317_-	hypothetical protein	A0A2H4IYI8	uncultured_Caudovirales_phage	5.0e-70	92.4
WP_173895952.1\|4492319_4492925_-	hypothetical protein	A0A2H4J0R3	uncultured_Caudovirales_phage	3.3e-97	85.9
WP_054572681.1\|4492924_4493509_-	hypothetical protein	A0A2H4IYI9	uncultured_Caudovirales_phage	1.4e-57	54.6
WP_173895954.1\|4493554_4496800_-\|tail	phage tail tape measure protein	A0A2D1GNQ1	Pseudomonas_phage	7.8e-52	32.4
WP_173895956.1\|4496853_4497084_-	hypothetical protein	NA	NA	NA	NA
WP_173895957.1\|4497143_4497359_-	hypothetical protein	A0A2D1GNK2	Pseudomonas_phage	5.9e-09	62.0
WP_173895959.1\|4497382_4497724_-	hypothetical protein	A0A2D1GNT5	Pseudomonas_phage	1.6e-24	53.6
WP_173895961.1\|4497736_4498237_-	hypothetical protein	A0A2D1GNF2	Pseudomonas_phage	4.4e-71	81.7
WP_121757697.1\|4498292_4498679_-	DUF3168 domain-containing protein	A0A2D1GNT4	Pseudomonas_phage	2.4e-53	80.5
WP_173895963.1\|4498671_4499247_-	HK97 gp10 family phage protein	A0A2D1GNN2	Pseudomonas_phage	1.8e-52	56.3
WP_173895965.1\|4499251_4499431_-	hypothetical protein	A0A2D1GNQ5	Pseudomonas_phage	7.3e-05	44.6
WP_173895967.1\|4499439_4499766_-\|head,tail	head-tail adaptor protein	A0A2D1GNG1	Pseudomonas_phage	1.6e-26	60.4
WP_016715891.1\|4499765_4500065_-\|head,tail	phage gp6-like head-tail connector protein	A0A2H4J8C5	uncultured_Caudovirales_phage	5.5e-37	74.7
WP_173895969.1\|4500065_4500284_-	hypothetical protein	NA	NA	NA	NA
WP_009681829.1\|4500335_4501538_-\|capsid	phage major capsid protein	A0A2H4J8D1	uncultured_Caudovirales_phage	3.2e-144	63.4
WP_009681830.1\|4501534_4502176_-\|head,protease	HK97 family phage prohead protease	A0A2H4JA51	uncultured_Caudovirales_phage	2.3e-88	77.0
WP_173895971.1\|4502162_4503374_-\|portal	phage portal protein	A0A2H4JFN7	uncultured_Caudovirales_phage	3.4e-170	73.4
WP_173895973.1\|4503376_4505065_-\|terminase	terminase large subunit	A0A2H4JDK9	uncultured_Caudovirales_phage	1.9e-251	81.7
WP_173895975.1\|4505061_4505607_-\|terminase	terminase small subunit	Q3HQS6	Burkholderia_phage	2.9e-20	43.8
WP_173895977.1\|4505764_4506103_-	HNH endonuclease	C4ML58	Xanthomonas_virus	4.3e-22	47.7
WP_173895979.1\|4506105_4506297_-	hypothetical protein	NA	NA	NA	NA
WP_047594930.1\|4506300_4506624_-\|holin	phage holin, lambda family	A0A1W6JTC7	Pseudomonas_phage	1.3e-28	64.2
WP_173895742.1\|4507497_4508319_-	hypothetical protein	NA	NA	NA	NA
WP_015271435.1\|4508436_4508625_+	hypothetical protein	NA	NA	NA	NA
WP_015271436.1\|4508941_4509451_-	acyloxyacyl hydrolase	A0A2H4J0I5	uncultured_Caudovirales_phage	1.1e-85	95.3
WP_054572660.1\|4509676_4510066_-	antitermination protein Q	A0A1W6JTD2	Pseudomonas_phage	2.5e-37	59.4
WP_103469962.1\|4510062_4510350_-	hypothetical protein	A0A1W6JTC1	Pseudomonas_phage	3.4e-12	42.5
WP_173895981.1\|4510342_4511677_-\|integrase	site-specific integrase	A0A2D1GND4	Pseudomonas_phage	3.7e-109	47.8
WP_103469964.1\|4511673_4512018_-	Lar family restriction alleviation protein	A0A0H5ARQ3	Pseudomonas_phage	8.0e-32	57.9
WP_103469965.1\|4512014_4513379_-	replicative DNA helicase	A0A2H4J8N1	uncultured_Caudovirales_phage	1.9e-140	58.7
WP_173895983.1\|4513375_4514176_-	ATP-binding protein	A0A1W6JTD8	Pseudomonas_phage	5.0e-61	48.4
WP_129932392.1\|4514156_4514888_-	helix-turn-helix domain-containing protein	Q8HA96	Salmonella_phage	3.7e-34	43.0
WP_173896092.1\|4514892_4515120_-	hypothetical protein	NA	NA	NA	NA
WP_173895985.1\|4515413_4516160_-	phage antirepressor	A0A1W6JTB2	Pseudomonas_phage	8.9e-28	40.6
WP_173895987.1\|4516156_4516453_-	hypothetical protein	NA	NA	NA	NA
WP_173895989.1\|4516446_4516743_-	hypothetical protein	NA	NA	NA	NA
WP_173895991.1\|4516739_4517054_-	hypothetical protein	NA	NA	NA	NA
WP_173895993.1\|4517189_4517489_-	helix-turn-helix domain-containing protein	A0A2H4J114	uncultured_Caudovirales_phage	1.9e-13	60.0
WP_103469971.1\|4517580_4518411_+	helix-turn-helix transcriptional regulator	H2BD63	Pseudomonas_phage	1.7e-56	45.4
WP_103469972.1\|4518444_4518762_-	DUF1654 domain-containing protein	A0A2D1GND3	Pseudomonas_phage	1.1e-24	61.0
WP_009681853.1\|4518919_4519309_+	LuxR family transcriptional regulator	A0A1W6JTA9	Pseudomonas_phage	1.9e-26	56.6
WP_103469974.1\|4519392_4519641_+	hypothetical protein	NA	NA	NA	NA
WP_054890605.1\|4519637_4520471_+\|transposase	transposase	A0A0A0YRT7	Pseudomonas_phage	1.4e-111	89.1
WP_173895994.1\|4520523_4520841_+	carbon storage regulator CsrA	L7TH77	Pseudomonas_virus	5.7e-08	45.9
WP_173895996.1\|4520827_4521151_+	hypothetical protein	NA	NA	NA	NA
WP_173895999.1\|4521147_4521291_+	hypothetical protein	NA	NA	NA	NA
WP_103469977.1\|4521287_4521692_+	hypothetical protein	NA	NA	NA	NA
WP_173896000.1\|4521688_4521937_+	hypothetical protein	B5WZU8	Pseudomonas_phage	5.8e-16	57.9
WP_019438261.1\|4521933_4522551_-	hypothetical protein	NA	NA	NA	NA
WP_173896002.1\|4522569_4523547_-\|integrase	site-specific integrase	W6MYA3	Pseudomonas_phage	1.2e-125	69.5
WP_004375217.1\|4523838_4524549_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3HI61	Synechococcus_phage	1.9e-40	37.9
4523656:4523720	attR	NA	NA	NA	NA
WP_015271459.1\|4524579_4525338_-	MBL fold metallo-hydrolase	A8ATK9	Listeria_phage	1.3e-18	28.3

DBSCAN-SWA_9

5920658 : 5925707

uncultured_Caudovirales_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_054572039.1\|5920658_5921207_-	N-acetyltransferase	A0A2H4J136	uncultured_Caudovirales_phage	2.5e-56	67.7
WP_054572040.1\|5921199_5922282_-	NAD(P)/FAD-dependent oxidoreductase	A0A2H4J2Q2	uncultured_Caudovirales_phage	1.4e-106	66.5
WP_054572041.1\|5922307_5922811_-	dual specificity protein phosphatase family protein	NA	NA	NA	NA
WP_023048559.1\|5922815_5923529_-	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	1.8e-118	89.5
WP_054572043.1\|5923552_5924023_-	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	4.7e-67	82.1
WP_054572044.1\|5924037_5925321_-	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	4.0e-201	85.5
WP_054572045.1\|5925350_5925707_-	metalloregulator ArsR/SmtB family transcription factor	A0A2H4J145	uncultured_Caudovirales_phage	7.0e-39	65.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP045553

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection