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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP046396 Escherichia coli strain ampC_0069 chromosome, complete genome 6 crisprs RT,csa3,PD-DExK,WYL,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG 2 24 7 0

Results visualization

1. NZ_CP046396
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046396_1 1157943-1159255 Unclear I-E
21 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046396_2 1184802-1185624 TypeI-E I-E
13 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046396_3 2358416-2358539 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046396_4 3160532-3160679 Orphan I-F
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046396_5 4183171-4183306 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046396_6 4190744-4190885 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP046396_1 1.15|1158827|33|NZ_CP046396|PILER-CR 1158827-1158859 33 NZ_CP046396.1 1138111-1138143 1 0.97
NZ_CP046396_1 1.36|1158828|32|NZ_CP046396|CRISPRCasFinder,CRT 1158828-1158859 32 NZ_CP046396.1 1138111-1138142 1 0.969

1. spacer 1.15|1158827|33|NZ_CP046396|PILER-CR matches to position: 1138111-1138143, mismatch: 1, identity: 0.97 

attccggctacttttgttgctccctgctcatcc	CRISPR spacer
attccagctacttttgttgctccctgctcatcc	Protospacer
*****.***************************

2. spacer 1.36|1158828|32|NZ_CP046396|CRISPRCasFinder,CRT matches to position: 1138111-1138142, mismatch: 1, identity: 0.969 

ttccggctacttttgttgctccctgctcatcc	CRISPR spacer
ttccagctacttttgttgctccctgctcatcc	Protospacer
****.***************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP046396_5 5.1|4183191|43|NZ_CP046396|PILER-CR 4183191-4183233 43 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 141084-141126 0 1.0
NZ_CP046396_3 3.1|2358459|38|NZ_CP046396|CRISPRCasFinder 2358459-2358496 38 NZ_CP043437 Enterobacter sp. LU1 plasmid unnamed 113727-113764 2 0.947
NZ_CP046396_2 2.10|1185380|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT 1185380-1185411 32 MF547662 Clostridioides phage LIBA6276, complete genome 37369-37400 4 0.875
NZ_CP046396_2 2.10|1185380|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT 1185380-1185411 32 MF547663 Clostridioides phage LIBA2945, complete genome 37369-37400 4 0.875
NZ_CP046396_2 2.2|1184892|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT 1184892-1184923 32 MK972713 Salmonella phage SW5, complete genome 27687-27718 5 0.844
NZ_CP046396_2 2.2|1184892|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT 1184892-1184923 32 MK972714 Salmonella phage SW3, complete genome 27909-27940 5 0.844
NZ_CP046396_2 2.2|1184892|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT 1184892-1184923 32 NC_049460 Salmonella phage SI7, complete genome 18129-18160 5 0.844
NZ_CP046396_2 2.10|1185380|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT 1185380-1185411 32 NZ_CP029155 Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence 83504-83535 5 0.844
NZ_CP046396_2 2.3|1184953|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT 1184953-1184984 32 NZ_AP022319 Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence 1203814-1203845 6 0.812
NZ_CP046396_2 2.3|1184953|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT 1184953-1184984 32 NZ_CP029452 Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence 1167510-1167541 6 0.812
NZ_CP046396_6 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder 4190796-4190833 38 NZ_CP048307 Escherichia coli strain 9 plasmid p009_C, complete sequence 24789-24826 6 0.842
NZ_CP046396_6 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder 4190796-4190833 38 NZ_CP048307 Escherichia coli strain 9 plasmid p009_C, complete sequence 24902-24939 6 0.842
NZ_CP046396_6 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder 4190796-4190833 38 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 4073-4110 6 0.842
NZ_CP046396_6 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder 4190796-4190833 38 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 4072-4109 6 0.842
NZ_CP046396_6 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder 4190796-4190833 38 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 4072-4109 6 0.842
NZ_CP046396_6 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder 4190796-4190833 38 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 4072-4109 6 0.842
NZ_CP046396_1 1.25|1158155|32|NZ_CP046396|CRISPRCasFinder,CRT 1158155-1158186 32 NC_018022 Mycolicibacterium chubuense NBB4 plasmid pMYCCH.01, complete sequence 373536-373567 7 0.781
NZ_CP046396_2 2.1|1184831|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT 1184831-1184862 32 LR597649 Escherichia phage ESSI2_ev015 genome assembly, chromosome: 1 17850-17881 7 0.781
NZ_CP046396_2 2.1|1184831|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT 1184831-1184862 32 NC_049393 Escherichia phage ESSI2_ev040 genome assembly, chromosome: 1 17628-17659 7 0.781
NZ_CP046396_2 2.1|1184831|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT 1184831-1184862 32 NC_049394 Escherichia phage ESSI2_ev129 genome assembly, chromosome: 1 17890-17921 7 0.781
NZ_CP046396_2 2.3|1184953|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT 1184953-1184984 32 NZ_CP023071 Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence 1175642-1175673 7 0.781
NZ_CP046396_1 1.29|1158399|32|NZ_CP046396|CRISPRCasFinder,CRT 1158399-1158430 32 NZ_CP053709 Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence 405764-405795 8 0.75
NZ_CP046396_1 1.29|1158399|32|NZ_CP046396|CRISPRCasFinder,CRT 1158399-1158430 32 NZ_CP053710 Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed2, complete sequence 354033-354064 8 0.75
NZ_CP046396_1 1.29|1158399|32|NZ_CP046396|CRISPRCasFinder,CRT 1158399-1158430 32 NZ_CP053712 Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed5, complete sequence 91487-91518 8 0.75
NZ_CP046396_1 1.30|1158460|32|NZ_CP046396|CRISPRCasFinder,CRT 1158460-1158491 32 NC_013085 Synechococcus phage S-RSM4, complete genome 75536-75567 8 0.75
NZ_CP046396_1 1.30|1158460|32|NZ_CP046396|CRISPRCasFinder,CRT 1158460-1158491 32 FM207411 Synechococcus phage S-RSM4 complete genome 75536-75567 8 0.75
NZ_CP046396_1 1.34|1158705|33|NZ_CP046396|CRISPRCasFinder,CRT 1158705-1158737 33 NZ_CP020331 Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence 413541-413573 8 0.758
NZ_CP046396_1 1.39|1159011|32|NZ_CP046396|CRISPRCasFinder,CRT 1159011-1159042 32 MN855615 Siphoviridae sp. isolate 320, complete genome 7076-7107 8 0.75
NZ_CP046396_1 1.39|1159011|32|NZ_CP046396|CRISPRCasFinder,CRT 1159011-1159042 32 NC_034248 Rhizobium phage RHEph10, complete genome 31444-31475 8 0.75
NZ_CP046396_2 2.3|1184953|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT 1184953-1184984 32 NC_031109 Gordonia phage Jumbo, complete genome 25391-25422 8 0.75
NZ_CP046396_2 2.3|1184953|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT 1184953-1184984 32 NZ_CP050093 Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b5, complete sequence 398774-398805 8 0.75
NZ_CP046396_2 2.3|1184953|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT 1184953-1184984 32 NC_008384 Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11, complete sequence 565533-565564 8 0.75
NZ_CP046396_2 2.3|1184953|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT 1184953-1184984 32 NZ_CP042332 Bosea sp. F3-2 plasmid pB32-1, complete sequence 63515-63546 8 0.75
NZ_CP046396_2 2.3|1184953|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT 1184953-1184984 32 LR134125 Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5 350647-350678 8 0.75
NZ_CP046396_2 2.4|1185014|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT 1185014-1185045 32 CP022610 Escherichia coli strain ATCC 700415 plasmid unnamed, complete sequence 10541-10572 8 0.75
NZ_CP046396_2 2.5|1185075|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT 1185075-1185106 32 NZ_CP024236 Escherichia coli O6:H16 strain 2014EL-1346-6 plasmid unnamed4, complete sequence 57083-57114 8 0.75
NZ_CP046396_2 2.6|1185136|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT 1185136-1185167 32 MN694482 Marine virus AFVG_250M11, complete genome 1728-1759 8 0.75
NZ_CP046396_2 2.8|1185258|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT 1185258-1185289 32 NZ_CP008818 Ochrobactrum anthropi strain OAB plasmid 2, complete sequence 52227-52258 8 0.75
NZ_CP046396_2 2.8|1185258|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT 1185258-1185289 32 NC_009671 Ochrobactrum anthropi ATCC 49188 plasmid pOANT03, complete sequence 23638-23669 8 0.75
NZ_CP046396_6 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder 4190796-4190833 38 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 3331-3368 8 0.789
NZ_CP046396_6 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder 4190796-4190833 38 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 3330-3367 8 0.789
NZ_CP046396_6 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder 4190796-4190833 38 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 3330-3367 8 0.789
NZ_CP046396_6 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder 4190796-4190833 38 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 3330-3367 8 0.789
NZ_CP046396_1 1.13|1158704|34|NZ_CP046396|PILER-CR 1158704-1158737 34 NZ_CP020331 Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence 413540-413573 9 0.735
NZ_CP046396_1 1.18|1159010|33|NZ_CP046396|PILER-CR 1159010-1159042 33 MN855615 Siphoviridae sp. isolate 320, complete genome 7075-7107 9 0.727
NZ_CP046396_1 1.29|1158399|32|NZ_CP046396|CRISPRCasFinder,CRT 1158399-1158430 32 JX469828 Uncultured bacterium plasmid pRSB223, complete sequence 47585-47616 9 0.719
NZ_CP046396_1 1.29|1158399|32|NZ_CP046396|CRISPRCasFinder,CRT 1158399-1158430 32 JX469829 Uncultured bacterium plasmid pB1, complete sequence 23183-23214 9 0.719
NZ_CP046396_1 1.29|1158399|32|NZ_CP046396|CRISPRCasFinder,CRT 1158399-1158430 32 NZ_CP015881 Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence 393203-393234 9 0.719
NZ_CP046396_1 1.29|1158399|32|NZ_CP046396|CRISPRCasFinder,CRT 1158399-1158430 32 NC_008766 Acidovorax sp. JS42 plasmid pAOVO02, complete sequence 3158-3189 9 0.719
NZ_CP046396_1 1.29|1158399|32|NZ_CP046396|CRISPRCasFinder,CRT 1158399-1158430 32 NZ_CP020331 Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence 569059-569090 9 0.719
NZ_CP046396_1 1.29|1158399|32|NZ_CP046396|CRISPRCasFinder,CRT 1158399-1158430 32 NZ_MN366361 Bacterium plasmid pALTS33, complete sequence 54575-54606 9 0.719
NZ_CP046396_1 1.31|1158521|32|NZ_CP046396|CRISPRCasFinder,CRT 1158521-1158552 32 MW084976 Bacillus phage Kirov, complete genome 56770-56801 9 0.719
NZ_CP046396_1 1.37|1158889|32|NZ_CP046396|CRISPRCasFinder,CRT 1158889-1158920 32 NZ_CP016721 Lactococcus lactis subsp. lactis strain UC11 plasmid pUC11B, complete sequence 30466-30497 9 0.719
NZ_CP046396_1 1.37|1158889|32|NZ_CP046396|CRISPRCasFinder,CRT 1158889-1158920 32 NZ_CP016727 Lactococcus lactis subsp. lactis strain UC08 plasmid pUC08B, complete sequence 30464-30495 9 0.719
NZ_CP046396_1 1.41|1159133|32|NZ_CP046396|CRISPRCasFinder,CRT 1159133-1159164 32 MK448690 Streptococcus phage Javan169, complete genome 9831-9862 9 0.719
NZ_CP046396_1 1.41|1159133|32|NZ_CP046396|CRISPRCasFinder,CRT 1159133-1159164 32 MK448854 Streptococcus phage Javan146, complete genome 11811-11842 9 0.719
NZ_CP046396_2 2.3|1184953|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT 1184953-1184984 32 NZ_CP017077 Novosphingobium resinovorum strain SA1 plasmid pSA2, complete sequence 555186-555217 9 0.719
NZ_CP046396_2 2.3|1184953|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT 1184953-1184984 32 NZ_CP040819 Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence 471692-471723 9 0.719
NZ_CP046396_2 2.5|1185075|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT 1185075-1185106 32 NZ_CP053709 Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence 137043-137074 9 0.719
NZ_CP046396_2 2.7|1185197|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT 1185197-1185228 32 MT446414 UNVERIFIED: Escherichia virus TH43, complete genome 38100-38131 9 0.719
NZ_CP046396_2 2.9|1185319|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT 1185319-1185350 32 MN812211 Flavobacterium phage vB_FspS_laban6-1, complete genome 21752-21783 9 0.719
NZ_CP046396_2 2.9|1185319|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT 1185319-1185350 32 NZ_CP012534 Psychrobacter sp. P11G5 plasmid pPspP11G5a, complete sequence 26937-26968 9 0.719
NZ_CP046396_2 2.10|1185380|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT 1185380-1185411 32 MN693584 Marine virus AFVG_25M163, complete genome 29591-29622 9 0.719
NZ_CP046396_2 2.10|1185380|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT 1185380-1185411 32 MN103543 Pseudomonas phage vB_PaeM_PS119XW, complete genome 258501-258532 9 0.719
NZ_CP046396_2 2.10|1185380|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT 1185380-1185411 32 MK599315 Pseudomonas phage PA1C, complete genome 257887-257918 9 0.719
NZ_CP046396_4 4.2|3160620|32|NZ_CP046396|CRISPRCasFinder 3160620-3160651 32 NZ_CP045060 Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p1, complete sequence 9736-9767 9 0.719
NZ_CP046396_4 4.2|3160620|32|NZ_CP046396|CRISPRCasFinder 3160620-3160651 32 NZ_CP045053 Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p1, complete sequence 9737-9768 9 0.719
NZ_CP046396_4 4.2|3160620|32|NZ_CP046396|CRISPRCasFinder 3160620-3160651 32 NZ_CP045057 Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p1, complete sequence 9736-9767 9 0.719
NZ_CP046396_6 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder 4190796-4190833 38 NZ_CP048307 Escherichia coli strain 9 plasmid p009_C, complete sequence 14114-14151 9 0.763
NZ_CP046396_6 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder 4190796-4190833 38 NZ_CP048307 Escherichia coli strain 9 plasmid p009_C, complete sequence 51843-51880 9 0.763
NZ_CP046396_6 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder 4190796-4190833 38 NZ_CP053606 Escherichia coli strain NEB_Turbo plasmid F', complete sequence 229388-229425 9 0.763
NZ_CP046396_6 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder 4190796-4190833 38 NZ_CP053608 Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence 239882-239919 9 0.763
NZ_CP046396_6 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder 4190796-4190833 38 NZ_CP014271 Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence 230794-230831 9 0.763
NZ_CP046396_6 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder 4190796-4190833 38 NZ_CP014273 Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence 211764-211801 9 0.763
NZ_CP046396_6 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder 4190796-4190833 38 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 40383-40420 9 0.763
NZ_CP046396_6 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder 4190796-4190833 38 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 313601-313638 9 0.763
NZ_CP046396_6 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder 4190796-4190833 38 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 386517-386554 9 0.763
NZ_CP046396_6 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder 4190796-4190833 38 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 397090-397127 9 0.763
NZ_CP046396_6 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder 4190796-4190833 38 NZ_AP023206 Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence 404135-404172 9 0.763
NZ_CP046396_6 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder 4190796-4190833 38 NZ_CP044308 Escherichia coli strain C27A plasmid pC27A-3, complete sequence 114998-115035 9 0.763
NZ_CP046396_6 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder 4190796-4190833 38 NZ_CP019246 Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence 40307-40344 9 0.763
NZ_CP046396_6 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder 4190796-4190833 38 MT230112 Escherichia coli strain DH5alpha plasmid pESBL112, complete sequence 103-140 9 0.763
NZ_CP046396_6 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder 4190796-4190833 38 NZ_AP023207 Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence 31308-31345 9 0.763
NZ_CP046396_6 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder 4190796-4190833 38 NZ_AP023208 Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence 8897-8934 9 0.763
NZ_CP046396_6 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder 4190796-4190833 38 NZ_AP023208 Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence 17901-17938 9 0.763
NZ_CP046396_1 1.29|1158399|32|NZ_CP046396|CRISPRCasFinder,CRT 1158399-1158430 32 NC_004929 Ruegeria sp. PR1b plasmid pSD20, complete sequence 67373-67404 10 0.688
NZ_CP046396_2 2.9|1185319|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT 1185319-1185350 32 NZ_KX711616 Bacillus subtilis strain 72 plasmid pBS72, complete sequence 1474-1505 10 0.688
NZ_CP046396_6 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder 4190796-4190833 38 NZ_CP044308 Escherichia coli strain C27A plasmid pC27A-3, complete sequence 56040-56077 10 0.737
NZ_CP046396_6 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder 4190796-4190833 38 NZ_CP053046 Escherichia fergusonii strain HNCF11W plasmid pHNCF11W-130kb, complete sequence 58275-58312 10 0.737
NZ_CP046396_6 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder 4190796-4190833 38 NZ_CP010208 Escherichia coli strain M11 plasmid B, complete sequence 30215-30252 10 0.737
NZ_CP046396_2 2.9|1185319|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT 1185319-1185350 32 NC_023026 Francisella novicida strain PA10-7858 plasmid pFNPA10, complete sequence 2981-3012 11 0.656

1. spacer 5.1|4183191|43|NZ_CP046396|PILER-CR matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 0, identity: 1.0 

tgtcacacgcagataaatccaactttcaatattgttaagttcc	CRISPR spacer
tgtcacacgcagataaatccaactttcaatattgttaagttcc	Protospacer
*******************************************

2. spacer 3.1|2358459|38|NZ_CP046396|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947 

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

3. spacer 2.10|1185380|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT matches to MF547662 (Clostridioides phage LIBA6276, complete genome) position: , mismatch: 4, identity: 0.875 

tacagtttccataaattcacctcgtttatata-	CRISPR spacer
tactgtttccataaattcacctc-cttataaaa	Protospacer
*** ******************* .***** *

4. spacer 2.10|1185380|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT matches to MF547663 (Clostridioides phage LIBA2945, complete genome) position: , mismatch: 4, identity: 0.875 

tacagtttccataaattcacctcgtttatata-	CRISPR spacer
tactgtttccataaattcacctc-cttataaaa	Protospacer
*** ******************* .***** *

5. spacer 2.2|1184892|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT matches to MK972713 (Salmonella phage SW5, complete genome) position: , mismatch: 5, identity: 0.844 

gaccagtcgggccagacatcggggacgcagaa	CRISPR spacer
gaccagtcgggccagacatcgagcacggccaa	Protospacer
*********************.* ***   **

6. spacer 2.2|1184892|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT matches to MK972714 (Salmonella phage SW3, complete genome) position: , mismatch: 5, identity: 0.844 

gaccagtcgggccagacatcggggacgcagaa	CRISPR spacer
gaccagtcgggccagacatcgagcacggccaa	Protospacer
*********************.* ***   **

7. spacer 2.2|1184892|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT matches to NC_049460 (Salmonella phage SI7, complete genome) position: , mismatch: 5, identity: 0.844 

gaccagtcgggccagacatcggggacgcagaa	CRISPR spacer
gaccagtcgggccagacatcgagcacggccaa	Protospacer
*********************.* ***   **

8. spacer 2.10|1185380|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029155 (Clostridioides difficile strain CD161 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.844 

tacagtttccataaattcacctcgtttatata-	CRISPR spacer
tactgtttccataaattcacctc-cctataaaa	Protospacer
*** ******************* ..**** *

9. spacer 2.3|1184953|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022319 (Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence) position: , mismatch: 6, identity: 0.812 

ccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
cacgcggccatcgcgcagttcgtcgaacgccg	Protospacer
*  .* *********** ***********.**

10. spacer 2.3|1184953|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 6, identity: 0.812 

ccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
gcgttcgccatcgcgcatttcgtccatcgttg	Protospacer
 ** .******************* * ***.*

11. spacer 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 6, identity: 0.842 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
ttgatgtcggatgcggcgtaaacgccttatccgaccta	Protospacer
* * *************.**************.***..

12. spacer 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 6, identity: 0.842 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
ttgatgtcggatgcggcgtaaacgccttatccgaccta	Protospacer
* * *************.**************.***..

13. spacer 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 6, identity: 0.842 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
taactgccggatgcggcataaacgccttatccggccta	Protospacer
**.***.*************************..**..

14. spacer 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 6, identity: 0.842 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
taactgccggatgcggcataaacgccttatccggccta	Protospacer
**.***.*************************..**..

15. spacer 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 6, identity: 0.842 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
taactgccggatgcggcataaacgccttatccggccta	Protospacer
**.***.*************************..**..

16. spacer 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 6, identity: 0.842 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
taactgccggatgcggcataaacgccttatccggccta	Protospacer
**.***.*************************..**..

17. spacer 1.25|1158155|32|NZ_CP046396|CRISPRCasFinder,CRT matches to NC_018022 (Mycolicibacterium chubuense NBB4 plasmid pMYCCH.01, complete sequence) position: , mismatch: 7, identity: 0.781 

aatggcgctgccgatcgacaaatgggacctgg-	CRISPR spacer
gatggcgatgccgatggacaaat-gcacatgct	Protospacer
.****** ******* ******* * ** **

18. spacer 2.1|1184831|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT matches to LR597649 (Escherichia phage ESSI2_ev015 genome assembly, chromosome: 1) position: , mismatch: 7, identity: 0.781 

caaacgtcaggcggaagtgttccggtcatata	CRISPR spacer
aaaggctcaggctgaagtgttccggtcttaca	Protospacer
 **.  ****** ************** **.*

19. spacer 2.1|1184831|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT matches to NC_049393 (Escherichia phage ESSI2_ev040 genome assembly, chromosome: 1) position: , mismatch: 7, identity: 0.781 

caaacgtcaggcggaagtgttccggtcatata	CRISPR spacer
aaaggctcaggctgaagtgttccggtcttaca	Protospacer
 **.  ****** ************** **.*

20. spacer 2.1|1184831|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT matches to NC_049394 (Escherichia phage ESSI2_ev129 genome assembly, chromosome: 1) position: , mismatch: 7, identity: 0.781 

caaacgtcaggcggaagtgttccggtcatata	CRISPR spacer
aaaggctcaggctgaagtgttccggtcttaca	Protospacer
 **.  ****** ************** **.*

21. spacer 2.3|1184953|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023071 (Sinorhizobium fredii CCBAU 83666 plasmid pSF83666b, complete sequence) position: , mismatch: 7, identity: 0.781 

ccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
gcgttcgccatcgcgcatttcgtccatcgctg	Protospacer
 ** .******************* * **..*

22. spacer 1.29|1158399|32|NZ_CP046396|CRISPRCasFinder,CRT matches to NZ_CP053709 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75 

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ccccgccagcgccccgcgcgcctgcttcgtcc	Protospacer
*** ********** ******** .** ..*.

23. spacer 1.29|1158399|32|NZ_CP046396|CRISPRCasFinder,CRT matches to NZ_CP053710 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75 

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ccccgccagcgccccgcgcgcctgcttcgtcc	Protospacer
*** ********** ******** .** ..*.

24. spacer 1.29|1158399|32|NZ_CP046396|CRISPRCasFinder,CRT matches to NZ_CP053712 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed5, complete sequence) position: , mismatch: 8, identity: 0.75 

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ccccgccagcgccccgcgcgcctgcttcgtcc	Protospacer
*** ********** ******** .** ..*.

25. spacer 1.30|1158460|32|NZ_CP046396|CRISPRCasFinder,CRT matches to NC_013085 (Synechococcus phage S-RSM4, complete genome) position: , mismatch: 8, identity: 0.75 

-----tccttaattacaacgacaccactggaaaaatt	CRISPR spacer
gtagctcc-----tacaacgacagcattggaaaaatc	Protospacer
     ***     ********** **.*********.

26. spacer 1.30|1158460|32|NZ_CP046396|CRISPRCasFinder,CRT matches to FM207411 (Synechococcus phage S-RSM4 complete genome) position: , mismatch: 8, identity: 0.75 

-----tccttaattacaacgacaccactggaaaaatt	CRISPR spacer
gtagctcc-----tacaacgacagcattggaaaaatc	Protospacer
     ***     ********** **.*********.

27. spacer 1.34|1158705|33|NZ_CP046396|CRISPRCasFinder,CRT matches to NZ_CP020331 (Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence) position: , mismatch: 8, identity: 0.758 

cgggagccagtgctaacgatatcgcggccgcgc	CRISPR spacer
ggcgcggcagcgcgaacgatatcgcggccgccg	Protospacer
 * * * ***.** *****************

28. spacer 1.39|1159011|32|NZ_CP046396|CRISPRCasFinder,CRT matches to MN855615 (Siphoviridae sp. isolate 320, complete genome) position: , mismatch: 8, identity: 0.75 

gccgcgtacatcaacgcagcagcaagcgcata	CRISPR spacer
ccactgcccatcaaagcaccagcaagcgcata	Protospacer
 *  .*. ****** *** *************

29. spacer 1.39|1159011|32|NZ_CP046396|CRISPRCasFinder,CRT matches to NC_034248 (Rhizobium phage RHEph10, complete genome) position: , mismatch: 8, identity: 0.75 

gccgcgtacatcaacgcagcagcaagcgcata	CRISPR spacer
accgcggccatcaacgcagcagcataaggaga	Protospacer
.*****  **************** . * * *

30. spacer 2.3|1184953|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT matches to NC_031109 (Gordonia phage Jumbo, complete genome) position: , mismatch: 8, identity: 0.75 

ccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
gacaataccatcgcggattttgtcgaacgtcg	Protospacer
   * ..******** ****.***********

31. spacer 2.3|1184953|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050093 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b5, complete sequence) position: , mismatch: 8, identity: 0.75 

ccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
tctgacggcatcgcgcatttcggcgaacgcct	Protospacer
.* . ** ************** ******.*

32. spacer 2.3|1184953|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT matches to NC_008384 (Rhizobium leguminosarum bv. viciae 3841 plasmid pRL11, complete sequence) position: , mismatch: 8, identity: 0.75 

ccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
tctgacggcatcgcgcatttcggcgaacgcct	Protospacer
.* . ** ************** ******.*

33. spacer 2.3|1184953|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042332 (Bosea sp. F3-2 plasmid pB32-1, complete sequence) position: , mismatch: 8, identity: 0.75 

ccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
cacgacgccgtcgcgcatttcgtcgaccgcct	Protospacer
*  . ****.**************** **.*

34. spacer 2.3|1184953|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 8, identity: 0.75 

ccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
gccgccgccatcgcgcaattcggcgaatatgg	Protospacer
 * .************* **** ****..* *

35. spacer 2.4|1185014|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT matches to CP022610 (Escherichia coli strain ATCC 700415 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75 

caaaaaaataatatccggcagtctgtacggta	CRISPR spacer
aagaaaaatcatatccggcagtctttagcgag	Protospacer
 *.****** ************** **  * .

36. spacer 2.5|1185075|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP024236 (Escherichia coli O6:H16 strain 2014EL-1346-6 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.75 

-caacattttccaatatcacccagcaatcaatt	CRISPR spacer
gtaac-ttttctaatatcacccagcactccggg	Protospacer
 .*** *****.************** ** .

37. spacer 2.6|1185136|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT matches to MN694482 (Marine virus AFVG_250M11, complete genome) position: , mismatch: 8, identity: 0.75 

tcatgaaggcttcgattatttcttgatacctg	CRISPR spacer
tcattaaggcttcgattttttctagtttagtt	Protospacer
**** ************ ***** * *   *

38. spacer 2.8|1185258|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP008818 (Ochrobactrum anthropi strain OAB plasmid 2, complete sequence) position: , mismatch: 8, identity: 0.75 

-caataacaccggcatttgtccacgacaatatt	CRISPR spacer
tcggcgacg-cggcatttgtccacgacacaatt	Protospacer
 *....**. ******************  ***

39. spacer 2.8|1185258|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT matches to NC_009671 (Ochrobactrum anthropi ATCC 49188 plasmid pOANT03, complete sequence) position: , mismatch: 8, identity: 0.75 

-caataacaccggcatttgtccacgacaatatt	CRISPR spacer
tcggcgacg-cggcatttgtccacgacacaatt	Protospacer
 *....**. ******************  ***

40. spacer 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.789 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
caactgccggatgcggcgtaaacgccttatccgtccta	Protospacer
.*.***.**********.**************. **..

41. spacer 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.789 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
caactgccggatgcggcgtaaacgccttatccgtccta	Protospacer
.*.***.**********.**************. **..

42. spacer 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.789 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
caactgccggatgcggcgtaaacgccttatccgtccta	Protospacer
.*.***.**********.**************. **..

43. spacer 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.789 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
caactgccggatgcggcgtaaacgccttatccgtccta	Protospacer
.*.***.**********.**************. **..

44. spacer 1.13|1158704|34|NZ_CP046396|PILER-CR matches to NZ_CP020331 (Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence) position: , mismatch: 9, identity: 0.735 

gcgggagccagtgctaacgatatcgcggccgcgc	CRISPR spacer
cggcgcggcagcgcgaacgatatcgcggccgccg	Protospacer
  * * * ***.** *****************

45. spacer 1.18|1159010|33|NZ_CP046396|PILER-CR matches to MN855615 (Siphoviridae sp. isolate 320, complete genome) position: , mismatch: 9, identity: 0.727 

ggccgcgtacatcaacgcagcagcaagcgcata	CRISPR spacer
accactgcccatcaaagcaccagcaagcgcata	Protospacer
. *  .*. ****** *** *************

46. spacer 1.29|1158399|32|NZ_CP046396|CRISPRCasFinder,CRT matches to JX469828 (Uncultured bacterium plasmid pRSB223, complete sequence) position: , mismatch: 9, identity: 0.719 

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ggcctccagcgccttgcgcgcctctttagcgg	Protospacer
  *  ********. *************.*

47. spacer 1.29|1158399|32|NZ_CP046396|CRISPRCasFinder,CRT matches to JX469829 (Uncultured bacterium plasmid pB1, complete sequence) position: , mismatch: 9, identity: 0.719 

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ggcctccagcgccttgcgcgcctctttagcgg	Protospacer
  *  ********. *************.*

48. spacer 1.29|1158399|32|NZ_CP046396|CRISPRCasFinder,CRT matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 9, identity: 0.719 

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
gccgggcagcgcccggcgcgcctcagccatca	Protospacer
 **.* ******************  . *.*

49. spacer 1.29|1158399|32|NZ_CP046396|CRISPRCasFinder,CRT matches to NC_008766 (Acidovorax sp. JS42 plasmid pAOVO02, complete sequence) position: , mismatch: 9, identity: 0.719 

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ggcctccagcgccttgcgcgcctctttagcgg	Protospacer
  *  ********. *************.*

50. spacer 1.29|1158399|32|NZ_CP046396|CRISPRCasFinder,CRT matches to NZ_CP020331 (Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence) position: , mismatch: 9, identity: 0.719 

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
cggagcccgcgcccggcgcgccgcttcacatg	Protospacer
*  **** ************** ***.*  .

51. spacer 1.29|1158399|32|NZ_CP046396|CRISPRCasFinder,CRT matches to NZ_MN366361 (Bacterium plasmid pALTS33, complete sequence) position: , mismatch: 9, identity: 0.719 

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ggcctccagcgccttgcgcgcctctttagcgg	Protospacer
  *  ********. *************.*

52. spacer 1.31|1158521|32|NZ_CP046396|CRISPRCasFinder,CRT matches to MW084976 (Bacillus phage Kirov, complete genome) position: , mismatch: 9, identity: 0.719 

ttcgccaggtgttttcttttcccggtcagtca	CRISPR spacer
aattccaagtgttttcttttcccagtctataa	Protospacer
  . ***.***************.*** .* *

53. spacer 1.37|1158889|32|NZ_CP046396|CRISPRCasFinder,CRT matches to NZ_CP016721 (Lactococcus lactis subsp. lactis strain UC11 plasmid pUC11B, complete sequence) position: , mismatch: 9, identity: 0.719 

aatatttacttggatgcgtcggacattgaatc	CRISPR spacer
tttcatgacttgaatgcgtaggacattgaaag	Protospacer
  *  * *****.****** **********

54. spacer 1.37|1158889|32|NZ_CP046396|CRISPRCasFinder,CRT matches to NZ_CP016727 (Lactococcus lactis subsp. lactis strain UC08 plasmid pUC08B, complete sequence) position: , mismatch: 9, identity: 0.719 

aatatttacttggatgcgtcggacattgaatc	CRISPR spacer
tttcatgacttgaatgcgtaggacattgaaag	Protospacer
  *  * *****.****** **********

55. spacer 1.41|1159133|32|NZ_CP046396|CRISPRCasFinder,CRT matches to MK448690 (Streptococcus phage Javan169, complete genome) position: , mismatch: 9, identity: 0.719 

tcaacgaaaacgcagagcgaggaacggatatt	CRISPR spacer
aagagcaaaacggagagcgagaaacggatttc	Protospacer
  .*  ****** ********.******* *.

56. spacer 1.41|1159133|32|NZ_CP046396|CRISPRCasFinder,CRT matches to MK448854 (Streptococcus phage Javan146, complete genome) position: , mismatch: 9, identity: 0.719 

tcaacgaaaacgcagagcgaggaacggatatt	CRISPR spacer
aagagcaaaacggagagcgagaaacggatttc	Protospacer
  .*  ****** ********.******* *.

57. spacer 2.3|1184953|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017077 (Novosphingobium resinovorum strain SA1 plasmid pSA2, complete sequence) position: , mismatch: 9, identity: 0.719 

ccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
tcgaccggcatcgcgcagttcgtcgctgagag	Protospacer
.****** ********* *******   .  *

58. spacer 2.3|1184953|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040819 (Paraoceanicella profunda strain D4M1 plasmid pD4M1A, complete sequence) position: , mismatch: 9, identity: 0.719 

ccgaccgccatcgcgcatttcgtcgaacgtcg	CRISPR spacer
gagaccggcatcgcgcatttcctcgagcacat	Protospacer
  ***** ************* ****.*..

59. spacer 2.5|1185075|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053709 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719 

caacattttccaatatcacccagcaatcaatt	CRISPR spacer
gattgccttccaatatcagccagctatcaaat	Protospacer
 * ....*********** ***** ***** *

60. spacer 2.7|1185197|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT matches to MT446414 (UNVERIFIED: Escherichia virus TH43, complete genome) position: , mismatch: 9, identity: 0.719 

atttcattaattttgcagagaagtgtctcgaa	CRISPR spacer
atttcatcaactttgcagagaaggaaatttat	Protospacer
*******.**.************ .  *. *

61. spacer 2.9|1185319|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT matches to MN812211 (Flavobacterium phage vB_FspS_laban6-1, complete genome) position: , mismatch: 9, identity: 0.719 

gcgtaagaaaacaattttttcagaaaactaac	CRISPR spacer
aaataagaaaacaattttttcttaaaaaagat	Protospacer
. .******************  ****  .*.

62. spacer 2.9|1185319|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012534 (Psychrobacter sp. P11G5 plasmid pPspP11G5a, complete sequence) position: , mismatch: 9, identity: 0.719 

gcgtaagaaaacaattttttcag---aaaactaac	CRISPR spacer
gcgtaagaaaacagtttttccagttccagatg---	Protospacer
*************.*****.***    *.*.

63. spacer 2.10|1185380|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT matches to MN693584 (Marine virus AFVG_25M163, complete genome) position: , mismatch: 9, identity: 0.719 

tacagtttccataaattcacctcgtttatata	CRISPR spacer
ggggatatctataaactcacctcgtttatatt	Protospacer
 . ..* **.*****.***************

64. spacer 2.10|1185380|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT matches to MN103543 (Pseudomonas phage vB_PaeM_PS119XW, complete genome) position: , mismatch: 9, identity: 0.719 

tacagtttccataaattcacctcgtttatata	CRISPR spacer
cgcttcttccatacattcacctcggttatgga	Protospacer
..*  .******* ********** ****. *

65. spacer 2.10|1185380|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT matches to MK599315 (Pseudomonas phage PA1C, complete genome) position: , mismatch: 9, identity: 0.719 

tacagtttccataaattcacctcgtttatata	CRISPR spacer
cgcttcttccatacattcacctcggttatgga	Protospacer
..*  .******* ********** ****. *

66. spacer 4.2|3160620|32|NZ_CP046396|CRISPRCasFinder matches to NZ_CP045060 (Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p1, complete sequence) position: , mismatch: 9, identity: 0.719 

ttcactggtaacatactccacccgcccaccat	CRISPR spacer
tgtcctggtaacatgttccacccgcccggtgt	Protospacer
* . **********..***********. ..*

67. spacer 4.2|3160620|32|NZ_CP046396|CRISPRCasFinder matches to NZ_CP045053 (Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p1, complete sequence) position: , mismatch: 9, identity: 0.719 

ttcactggtaacatactccacccgcccaccat	CRISPR spacer
tgtcctggtaacatgttccacccgcccggtgt	Protospacer
* . **********..***********. ..*

68. spacer 4.2|3160620|32|NZ_CP046396|CRISPRCasFinder matches to NZ_CP045057 (Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p1, complete sequence) position: , mismatch: 9, identity: 0.719 

ttcactggtaacatactccacccgcccaccat	CRISPR spacer
tgtcctggtaacatgttccacccgcccggtgt	Protospacer
* . **********..***********. ..*

69. spacer 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 9, identity: 0.763 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
tgattgccggatgcggcgtaaacgccttatccggccta	Protospacer
*...**.**********.**************..**..

70. spacer 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 9, identity: 0.763 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
ctggtgccggatgcggcgtaaacgccttatccggccta	Protospacer
. * **.**********.**************..**..

71. spacer 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 9, identity: 0.763 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
cgactgccggatgcggcgtaaacgccttatccggccta	Protospacer
...***.**********.**************..**..

72. spacer 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 9, identity: 0.763 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
cgactgccggatgcggcgtaaacgccttatccggccta	Protospacer
...***.**********.**************..**..

73. spacer 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 9, identity: 0.763 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
cgactgccggatgcggcgtaaacgccttatccggccta	Protospacer
...***.**********.**************..**..

74. spacer 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 9, identity: 0.763 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
cgactgccggatgcggcgtaaacgccttatccggccta	Protospacer
...***.**********.**************..**..

75. spacer 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 9, identity: 0.763 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
tttttgccggatgcggcgtaaacgccttatccggccta	Protospacer
*  .**.**********.**************..**..

76. spacer 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 9, identity: 0.763 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
aaaatgccggatgcggcgtaaacgccttatccggccta	Protospacer
 *. **.**********.**************..**..

77. spacer 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 9, identity: 0.763 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
caagtgccggatgcggcgtaaacgccttatccggccta	Protospacer
.*. **.**********.**************..**..

78. spacer 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 9, identity: 0.763 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
caattgccggatgcggcgtaaacgccttatccggccta	Protospacer
.*..**.**********.**************..**..

79. spacer 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 9, identity: 0.763 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
ttcttgccggatgcggcgtaaacgccttatccggccta	Protospacer
*  .**.**********.**************..**..

80. spacer 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder matches to NZ_CP044308 (Escherichia coli strain C27A plasmid pC27A-3, complete sequence) position: , mismatch: 9, identity: 0.763 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
ccactgccggatgcggcgtaaacgccttatccgtccta	Protospacer
. .***.**********.**************. **..

81. spacer 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder matches to NZ_CP019246 (Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence) position: , mismatch: 9, identity: 0.763 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
tttatgccggatgcggcgtaaacgccttatccggccta	Protospacer
*   **.**********.**************..**..

82. spacer 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder matches to MT230112 (Escherichia coli strain DH5alpha plasmid pESBL112, complete sequence) position: , mismatch: 9, identity: 0.763 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
atgttgccggatgcggcgtaaacgccttatccggccta	Protospacer
  *.**.**********.**************..**..

83. spacer 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 9, identity: 0.763 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
caaatgccggatgcggcgtaaacgccttatccggccta	Protospacer
.*. **.**********.**************..**..

84. spacer 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 9, identity: 0.763 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
cggttgccggatgcggcgtaaacgccttatccggccta	Protospacer
..*.**.**********.**************..**..

85. spacer 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 9, identity: 0.763 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
gacttgccggatgcggcgtaaacgccttatccggccac	Protospacer
 * .**.**********.**************..**

86. spacer 1.29|1158399|32|NZ_CP046396|CRISPRCasFinder,CRT matches to NC_004929 (Ruegeria sp. PR1b plasmid pSD20, complete sequence) position: , mismatch: 10, identity: 0.688 

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ccccgcctgcgcccggcgcgcctgccagaggg	Protospacer
*** *** *************** .. .*

87. spacer 2.9|1185319|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT matches to NZ_KX711616 (Bacillus subtilis strain 72 plasmid pBS72, complete sequence) position: , mismatch: 10, identity: 0.688 

gcgtaagaaaacaattttttcagaaaactaac	CRISPR spacer
gacaaagaaaacaatcttttaagaaaagcttt	Protospacer
*   ***********.**** ****** .  .

88. spacer 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder matches to NZ_CP044308 (Escherichia coli strain C27A plasmid pC27A-3, complete sequence) position: , mismatch: 10, identity: 0.737 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
ccattgccggatgcggcgtaaacgccttatccggccta	Protospacer
. ..**.**********.**************..**..

89. spacer 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder matches to NZ_CP053046 (Escherichia fergusonii strain HNCF11W plasmid pHNCF11W-130kb, complete sequence) position: , mismatch: 10, identity: 0.737 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
aggttgccggatgcggcgtaaacgccttatccggcata	Protospacer
 .*.**.**********.**************..* ..

90. spacer 6.1|4190796|38|NZ_CP046396|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 10, identity: 0.737 

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
caaatgccggatgcggcgtaaacgccttatctggccta	Protospacer
.*. **.**********.*************...**..

91. spacer 2.9|1185319|32|NZ_CP046396|PILER-CR,CRISPRCasFinder,CRT matches to NC_023026 (Francisella novicida strain PA10-7858 plasmid pFNPA10, complete sequence) position: , mismatch: 11, identity: 0.656 

gcgtaagaaaacaattttttcagaaaactaac	CRISPR spacer
acgaaagaaaacaactttttcagagtggcgtt	Protospacer
.** **********.*********. . .. .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1830278 : 1839720 10 Enterobacteria_phage(85.71%) NA NA
DBSCAN-SWA_2 2440158 : 2532545 99 Enterobacteria_phage(37.25%) tail,terminase,holin,lysis,protease,portal NA
DBSCAN-SWA_3 3086232 : 3160317 80 Salmonella_phage(68.0%) tail,head,terminase,integrase,lysis,plate,capsid,protease,portal attL 3086132:3086158|attR 3120511:3120537
DBSCAN-SWA_4 3548859 : 3634908 95 Enterobacteria_phage(33.93%) transposase,tail,head,terminase,holin,integrase,lysis,capsid,protease,portal attL 3568154:3568181|attR 3617537:3617564
DBSCAN-SWA_5 3852269 : 3939671 88 Enterobacteria_phage(38.33%) tail,transposase,terminase,integrase,lysis,protease,portal attL 3913161:3913176|attR 3939876:3939891
DBSCAN-SWA_6 4578902 : 4620921 56 Escherichia_phage(34.0%) tail,tRNA,head,terminase,holin,integrase,lysis,capsid,protease,portal attL 4579464:4579479|attR 4600717:4600732
DBSCAN-SWA_7 4650075 : 4666596 22 Burkholderia_phage(33.33%) plate,tail NA

Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage