CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP050053	Pseudomonas aeruginosa strain LIUYANG-C chromosome, complete genome	3 crisprs	csa3,DEDDh,RT,DinG,WYL,cas3	1	2	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP050053_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP050053_1

342663-342776

Orphan

Consensus_repeat	Method
GGCCAAAGAACTGGAGGGCAAGGTATGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP050053_1

>merge|NZ_CP050053|1|342663-342776|CRISPRCasFinder
GGCCAAAGAACTGGAGGGCAAGGTATGAGCCAGCACAGCGTATCCCGCTCCGTATCCCGTTCAACAGGCTCTCCATCCAGAAGCGTGGCCAAAGAACTGGAGGGCAAGGTATGA

>NZ_CP050053|1|1|342663-342776|CRISPRCasFinder
GGCCAAAGAACTGGAGGGCAAGGTATGA	GCCAGCACAGCGTATCCCGCTCCGTATCCCGTTCAACAGGCTCTCCATCCAGAAGCGT
GGCCAAAGAACTGGAGGGCAAGGTATGA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP050053.1\|WP_003084339.1\|352443_353136_-\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP050053.1\|WP_003084327.1\|351126_351681_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050053.1\|WP_003112941.1\|346317_347370_+\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378890
NZ_CP050053.1\|WP_003112945.1\|351946_352441_+\|DUF523-domain-containing-protein	unknown	unknown	gnl\|CDD\|224597
NZ_CP050053.1\|WP_003112940.1\|343819_346207_-\|penicillin-acylase-family-protein	unknown	unknown	gnl\|CDD\|225241
NZ_CP050053.1\|WP_003112936.1\|330550_331216_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP050053.1\|WP_003112937.1\|332595_333972_-\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_CP050053.1\|WP_003107781.1\|331278_332340_-\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP050053.1\|WP_003084303.1\|340627_341782_+\|polyamine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|183226
NZ_CP050053.1\|WP_003084297.1\|336467_337838_+\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|180994
NZ_CP050053.1\|WP_003118764.1\|350406_351105_+\|2OG-Fe(II)-oxygenase	unknown	unknown	gnl\|CDD\|226274
NZ_CP050053.1\|WP_003118763.1\|348566_349586_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225176
NZ_CP050053.1\|WP_003084290.1\|335043_336402_+\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_CP050053.1\|WP_003111119.1\|329509_330388_-\|N-carbamoylputrescine-amidase	unknown	unknown	gnl\|CDD\|274553
NZ_CP050053.1\|WP_003084299.1\|337953_339057_+\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP050053.1\|WP_003084320.1\|349605_350358_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050053.1\|WP_003112938.1\|334250_335003_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|336781
NZ_CP050053.1\|WP_003084301.1\|339475_340573_+\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP050053.1\|WP_004352065.1\|347956_348568_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239267
NZ_CP050053.1\|WP_003112942.1\|347348_347852_-\|transcriptional-regulator	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP050053.1\|WP_003112941.1\|346317_347370_+\|AraC-family-transcriptional-regulator	gnl\|CDD\|378890	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term. AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].	2.54039e-32
NZ_CP050053.1\|WP_003112945.1\|351946_352441_+\|DUF523-domain-containing-protein	gnl\|CDD\|224597	COG1683, COG1683, Uncharacterized conserved protein [Function unknown].	2.14015e-67
NZ_CP050053.1\|WP_003112940.1\|343819_346207_-\|penicillin-acylase-family-protein	gnl\|CDD\|225241	COG2366, COG2366, Protein related to penicillin acylase [General function prediction only].	0
NZ_CP050053.1\|WP_003112936.1\|330550_331216_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	8.70235e-09
NZ_CP050053.1\|WP_003112937.1\|332595_333972_-\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	1.09186e-161
NZ_CP050053.1\|WP_003107781.1\|331278_332340_-\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	8.00795e-165
NZ_CP050053.1\|WP_003084303.1\|340627_341782_+\|polyamine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|183226	PRK11607, potG, putrescine ABC transporter ATP-binding subunit PotG.	0
NZ_CP050053.1\|WP_003084297.1\|336467_337838_+\|aspartate-aminotransferase-family-protein	gnl\|CDD\|180994	PRK07480, PRK07480, putative aminotransferase; Validated.	0
NZ_CP050053.1\|WP_003118764.1\|350406_351105_+\|2OG-Fe(II)-oxygenase	gnl\|CDD\|226274	COG3751, EGL-9, Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones].	2.81845e-78
NZ_CP050053.1\|WP_003084339.1\|352443_353136_-\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	3.29364e-79
NZ_CP050053.1\|WP_003084290.1\|335043_336402_+\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	5.71424e-158
NZ_CP050053.1\|WP_003111119.1\|329509_330388_-\|N-carbamoylputrescine-amidase	gnl\|CDD\|274553	TIGR03381, putative_carbon-nitrogen_hydrolase, N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one. [Central intermediary metabolism, Polyamine biosynthesis].	0
NZ_CP050053.1\|WP_003084299.1\|337953_339057_+\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NZ_CP050053.1\|WP_003112938.1\|334250_335003_+\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	gnl\|CDD\|336781	pfam07722, Peptidase_C26, Peptidase C26. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyze the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to pfam00117, but contain extensions in four loops and at the C-terminus.	1.81471e-108
NZ_CP050053.1\|WP_003084301.1\|339475_340573_+\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NZ_CP050053.1\|WP_004352065.1\|347956_348568_-\|hypothetical-protein	gnl\|CDD\|239267	cd02969, PRX_like1, Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.	0.0013342
NZ_CP050053.1\|WP_003118763.1\|348566_349586_+\|alpha/beta-hydrolase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	3.48481e-56

>NZ_CP050053.1|WP_003084303.1|340627_341782_+|polyamine-ABC-transporter-ATP-binding-protein
MAIASGAYKKALEGNQQPKEVLVKIDRVTKQFDETLAVDTVSLTINKGEIFALLGGSGSGKSTLLRMLAGFERPTEGRIFLDGQDITDLPPYERPINMMFQSYALFPHMSVAQNIAFGLKQDGLPKAEIDERVAEMLKLVHMTQYAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRSQMQLELVEIIERVGVTCVMVTHDQEEAMTMAQRIAIMHLGCIEQIGSPMDIYETPASRLVCEFIGNVNLFDGVLVEDVQDHAVIACPQLENPIYIGHGISTRAEDKRITYALRPEKVMISAQKPDNLEHAGHNWAQGTVYDIAYLGGHSVYYIKLASGMIVQAFMANAERHVARPTWDQSVYISWYDDSGVVLQS
>NZ_CP050053.1|WP_003084301.1|339475_340573_+|polyamine-ABC-transporter-substrate-binding-protein
MQHSIGKTLLVAALATAIAGPVQAEKKSLHIYNWTDYIAPTTLKDFTKESGIDVSYDVFDSNETLEGKLVSGHSGYDIVVPSNNFLGKQIQAGAFQKLDKSKLPNWKNLDPALLKQLEVSDPGNQYAVPYLWGTNGIGYNVAKVKEVLGDQPIDSWAILFEPENMKKLAKCGVAFMDSGDEMLPAALNYLGLDPNTHDPKDYKKAEEVLTKVRPYVSYFHSSKYISDLANGNICVAFGYSGDVFQAAARAEEAGKGIDIQYVIPKEGANLWFDLMAIPADAKAADNAYAFIDYLLRPEVIAKVSDYVGYANAIPGARPLMDKSVSDSEEVYPPQAVLDKLYVSAVLPAKVLRLQTRTWTRIKTGK
>NZ_CP050053.1|WP_003084299.1|337953_339057_+|polyamine-ABC-transporter-substrate-binding-protein
MMKRFGKTLLALTLAGSVAGMAQAADNKVLHVYNWSDYIAPDTLEKFTKETGIKVVYDVYDSNEVLEAKLLAGKSGYDVVVPSNSFLAKQIKAGVYQKLDKSKLPNWKNLNKDLMHTLEVSDPGNEHAIPYMWGTIGIGYNPDKVKAAFGDNAPVDSWDLVFKPENIQKLKQCGVSFLDSPTEILPAALHYLGYKPDTDNPKELKAAEELFLKIRPYVTYFHSSKYISDLANGNICVAIGYSGDIYQAKSRAEEAKNKVTVKYNIPKEGAGSFFDMVAIPKDAENTEGALAFVNFLMKPEIMAEITDVVQFPNGNAAATPLVSEAIRNDPGIYPSEEVMKKLYTFPDLPAKTQRAMTRSWTKIKSGK
>NZ_CP050053.1|WP_003084297.1|336467_337838_+|aspartate-aminotransferase-family-protein
MNSQITNAKTREWQALSRDHHLPPFTDYKQLNEKGARIITKAEGVYIWDSEGNKILDAMAGLWCVNVGYGREELVQAATRQMRELPFYNLFFQTAHPPVVELAKAIADVAPEGMNHVFFTGSGSEANDTVLRMVRHYWATKGQPQKKVVIGRWNGYHGSTVAGVSLGGMKALHEQGDFPIPGIVHIAQPYWYGEGGDMSPDEFGVWAAEQLEKKILEVGEENVAAFIAEPIQGAGGVIVPPDTYWPKIREILAKYDILFIADEVICGFGRTGEWFGSQYYGNAPDLMPIAKGLTSGYIPMGGVVVRDEIVEVLNQGGEFYHGFTYSGHPVAAAVALENIRILREEKIIEKVKAETAPYLQKRWQELADHPLVGEARGVGMVAALELVKNKKTRERFTDKGVGMLCREHCFRNGLIMRAVGDTMIISPPLVIDPSQIDELITLARKCLDQTAAAVLA
>NZ_CP050053.1|WP_003084290.1|335043_336402_+|glutamine-synthetase
MTTKLDQLTSWLKERKITEVECLISDLTGIARGKISPTNKFIAEKGMRLPESVLLQTVTGDYVEDDIYYDLLDPADIDMVCRPDENAVFLVPWAIEPTAMVIHDTFDKLGNPIELSPRNILKRVLKMYADKGWRPIVAPEMEFYLTKRSDDPDYPLQAPVGRSGRQETGRQSFSIDAANEFDPLFEDMYDWCEAQGLDLDTLIHEEGTAQMEINFRHGDALDLADQILVFKRTMREAALKHNVAATFMAKPMTGEPGSAMHLHQSIVDVKTGKNIFSNADGTMSELFLHHIGGLQKFIPEVLPLFAPNVNSFRRFLPDTSAPVNVEWGEENRTVGLRVPDSSPENRRVENRLAGADANPYLALAASLLCGYIGMVEGIKPSAQVKGRGYERRNLRLPLTIEAALERMENCKPLEQYLGSKFISGYVAVKRAEHENFKRVISSWEREFLLLSV
>NZ_CP050053.1|WP_003112938.1|334250_335003_+|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein
MSRLPLIGVTACTKQIGLHPYHIAGDKYLRAVVNGAGGLPLIIPALGESIDQAALLDSVDGLLFTGSPSNVEPRHYSGPASEPGTLHDSDRDATTLPLVRAAIDAGIPVLGICRGFQEMNVAFGGSLHQKVHEVGTFMDHREPADQPLEVQYAPRHAMHVQPGGVLAGIGLPSEFQVNSIHGQGVDRLAPGLRVEALAPDGLVEAISVEGAKAFALGVQWHPEWQVLTNPNYLAIFQAFGKACSKRAGQR
>NZ_CP050053.1|WP_003112937.1|332595_333972_-|glutamine-synthetase
MSVPQRAVQLTEPSEFLKEHPEVQFVDLLIADMNGVVRGKRIERNSLNKVFEKGINLPASLFALDITGSTVESTGLGLDIGDADRICYPIPGTLSMEPWQKRPTAQLLMTMHELEGEPFFADPREVLRQVVARFTEMELTIVAAFELEFYLIDQENVNGRPQPPRSPISGKRPQSVQVYSIDDLDEYVECLQDIIDGARAQGIPADAIVAESAPAQFEVNLNHVNDALKACDHAVLLKRLVKNIAYDHEMDTTFMAKPYPGQAGNGLHVHISLLDKHGNNIFTSEDPEQNAALRHAIGGVLETLPASMAFLCPNVNSYRRFGSQFYVPNAPSWGLDNRTVALRVPTGSPDAVRLEHRVAGADANPYLLLAAVLAGVHHGLTNKVEPGAPIEGNSYEQMEPSLPNNLRDALRELDESEIMAKYIDPKYIDIFVACKESELEEFEHSISDLEYNWYLHTV
>NZ_CP050053.1|WP_003107781.1|331278_332340_-|polyamine-ABC-transporter-substrate-binding-protein
MPRLSALLFLALAPWLAQAEETLRVYNWNDYIDPQVLESFQKDTGIRVEYHTFATAEELDKALRSGEAIDVAVPSHDTLPALLKDNLLRPLDFTQLPNRSHLDRQLLSKLAAVDPDNRHAVPYLWGAVGLAINTPQAEAAYGGPLPNSWSLLFDASQSQRLKSCGISLLDAPDETLAILLNYQGRNLGRTAPSQVRRAAEALHGLRPNLRYVDSERYIADLEGGRLCLAMAWVGDALRAAKAGQPVSFEVPQEGSVLFIDNLVIPAGAQHPREAHRFIDYLMQPKIAAQITAATLYPSGNADAAGFLDPALRQQPGLYPDRDTSRRLFALETPPEKLRPVVDEIWKAFRGASH
>NZ_CP050053.1|WP_003112936.1|330550_331216_-|TetR/AcrR-family-transcriptional-regulator
MQPTSPTRKPRASSQARIAAILDAARGLLADEGIGGLSIYSVAERAEMPPSSVYHFFPSVPALLQGLTGEVHAAFRACLEQPVDHAGLRCWRDLSRIVEERMLAVYARDAAARQLILASHGLAEVTQADRQHDVQLGQAMRALFERHFLLPPLPTDIEIFSLAMELGDRVYALSVQRHGIIDARLAEEGMRVFDAYLGLYLPPILEKRSEPLSGFISDLNR
>NZ_CP050053.1|WP_003111119.1|329509_330388_-|N-carbamoylputrescine-amidase
MTRNVTVAATQMACSWDRPANIARAEKLVRQAAARGAQIILIQELFETPYFCQKPNPDYLQLATTVEENAAIAHFQALARELQVVLPISFFERAGRARFNSIAVIDADGGNLGVYRKSHIPDGPGYHEKYYFNPGDTGFKVWQTRYARIGVGICWDQWFPESARSMALLGAELLFYPTAIGSEPHDASISSRDHWQRVQQGHAGANLMPLVASNRIGREEQDGYDITFYGSSFIADPFGEKVEELNRTEEGILVHTFDLDALERTRSAWGVFRDRRPNLYGPLKTLDGSLES
>NZ_CP050053.1|WP_003112940.1|343819_346207_-|penicillin-acylase-family-protein
MKRTLTVIAVAVAAAAAGGAWYLHAKQPLRNGSLALAHLQAPVDVRYDERGVPHLYAQNQTDLYRALGYVHAQDRLFQMEMLRRLARGELAEVLGPKLVDTDRLFRTLRIRDHAAEYSARQDKQSQPWKVLEAYLDGVNQFQENNPAPLEFDLLGIPRRPFTPEDTLSIAGYMAYSFAAAFRTEPVLTYIRDELGSDYLRIFDLDWHPQGVLTPSGALGAGDWKDLGALARLSQQALEDAGLPQFEGSNAWVVAGSRTASGKPLLAGDPHIRFAAPAVWYEAQLSAPGFELYGHHQALNPFASLGHNRAFGWSLTMFQNDDLDLVAEKVNPDNPNQVWYQGEWVDLQSEEQEIAVKGAAPVKLTLRRSPHGPIVNDALGASSGKTPIAMWWAFLETENPVLDAFYQLNRADTLAKARAAASKIHSPGLNLVWANAAGDIGWWASAALPKRPEGVNPSFILDGSKGEADKSGFYPFADNPQEENPARGYIVSANFQPVPANGRPIPGYYNLADRGQWLDTQLADRGTKWNLDNSRALQLGNRTGYAPRLLAPLLPVLREVVDDAEGKRLVEQLAAWNGDYPVDSTAATLFNQLLFQIAEGALHDELGDAFFDSLIATRAIDSALPRLAGDADSPWWDDRRTERRETRADIVRTAWNASLAHLRGTLGNDPSGWLWGKAHTLTHEHALGQQALLRRLLNVGPFAAPGTHEVPNNLSAKIGPAPWAVTYGPSTRRLVDFADPTHSLGINPVGQSGVPFDGHYDDQAEAYIEGHYLPQHYEENEVKANSKGVLVLEPKR
>NZ_CP050053.1|WP_003112941.1|346317_347370_+|AraC-family-transcriptional-regulator
MQDDPSTSPLTHSATLRRLLYEALDALGLDPTRVYRSVYRRIPLPPPTLGGRLVHDNAPLFWTELAAVTGDADIGLHLGEAMKPRLLDVVGYLLLSARDLEEALRSFVRFQHILSGGFAARLEVEGETARLILDINYLGYASLRQQIECLMLLFLKLLALISDDEFVAERIEFRHRAPPRLGEHRRLFGRLPLFSRPHDALVFSAALLRRPSRNANPDMHDVLTRHAEEQSRELSENRLLNRVRYLIELRLGEGYGLRQCAAELGLGSGALQRALAAGGASFRQVRDEVRRQRASEMLLAGRAIREVAKACGFAELSPFYRAFRRWHAAPPEQYRARLAKREEGYSTSGT
>NZ_CP050053.1|WP_003112942.1|347348_347852_-|transcriptional-regulator
MSLRPTLALLALVSLPLMAAQNDPQPSSKELMKEHQAQIQNDLADVDYKRKRIVEANMNLTDQEGEKFWPIYNTYRTESDKLSKETLKLLLDYAQAYNSGNVSDDQASKLIERVDDLQEDRLELRDKYVKRIAKNVSPKRAMRFLQIEIQLDAIATLEIGRQVPLVE
>NZ_CP050053.1|WP_004352065.1|347956_348568_-|hypothetical-protein
MASLAPVFRVNAMTPRRKTLLVSLVGLLWAGGLLAAYWWFEIRYIRPFSEQTTLFSGDSLRLPAELAGPGAIRLVHFWDPACPCNVGNQQHLGELIERFAGKGVEFHVLQKPGSQGRLPDNLAALRALAGLPGSEQLPASPAVAIWDRDGRLAYFGPYSEGAVCTSSNSFIEPILEALLQGRPVDATHTLAVGCYCPWTPEKG
>NZ_CP050053.1|WP_003118763.1|348566_349586_+|alpha/beta-hydrolase
MCSRAAEYPWVSPVARPRIDCSPEPPMSEAFNPDYLRQHLRPLAAAEADAAVLAYQAYYGLDLRSRHPRLQARLGSMAVDGRRLAVQAWLLPEARGSLLLMHGYYDHMGLYRHVVDWALGMGFSVLACDLPGHGLSEGERASIRDFAEYQAVFKGLLGQAAELDLAAPWHLCGQSTGGAILLDYLLHGGERPELGETILLAPLVRPRAWGWSKLSYRLLSPFVDSIPRRFSENSSDPQFLDFLREHDPLQPRTLPTAWVGALTRWVPRIERAPRRALSPLVVQGESDETVDWRHGLKVLREKFDEPRILLLEEARHHLANESEGLRRRYFDFLSDALGA
>NZ_CP050053.1|WP_003084320.1|349605_350358_-|hypothetical-protein
MRALLAFALLLVGLPALADPYQRLYQAAGWPDQRAHFSDALDAAQKRYQDKLPPALYQTLVDNSNRRFAPAEVDQRALNGLRENLPDSASPLNFFESPLGRKVVAAEVLATRRDQLLQHSNGLPRQTASEPRRALVKRLAQVLPAREAGAEVSLALAGVAADSLSQMLPGLPGLLGGGQTGQLLEGQRQRLVQQIGADLENTLLYVYRDLSDAELTQYVNFAESPAGRSYYQAALAALKAGLAVDQAVAP
>NZ_CP050053.1|WP_003118764.1|350406_351105_+|2OG-Fe(II)-oxygenase
MGRYCRHAADRLSRHRGGTLQWTMHINVNHPLLHRIVDELVDQGWSHQSIFMPERLTTRLAEECRTRAVAGDLTPAAIGRGDGQVIREGIRGDLTQWLEPGESEACDEYLGVMDSLRQALNASLFLGLEDFECHFALYPPGAYYQKHVDRFRDDDARTVSAVLYLNDAWLPEHGGALRLHLPQRQVDIQPTGGSLVVFMSAGTEHEVLPASRDRLSLTGWFRRRNESLLQLS
>NZ_CP050053.1|WP_003084327.1|351126_351681_-|hypothetical-protein
MLPTRSLLPFFLAPALLASAASQAAMEALDNDSLSQVTGQAGISLRLDLRAGAARVAWVDDGGSLSLRNLVIDNGCVKAGDCPDGRGGNIPLGAAQLGLSLPIFGVEQPTLALDVTTGSGGGQQLAISLPDLATINDQLIASGLPAQRIRLRVASDLYIGDNSIGRIELRDITDLRGTIKVWGH
>NZ_CP050053.1|WP_003112945.1|351946_352441_+|DUF523-domain-containing-protein
MQKVLVSRCLLGHLVRYDGGSHGPFDLLSRWHAQGRIVALCPEVAGGLPTPRPPAEIPGGQGGEVLDRLNRVFTVDGEDVSEAFLLGAEAAVELVRRHDIRMAVLKARSPSCGNLENYDGRFNGNRVAGEGVTAAALKRMGVLVFNEDELDRAAVCLAGLDAGG
>NZ_CP050053.1|WP_003084339.1|352443_353136_-|amino-acid-ABC-transporter-permease
MNSLQKLLEWLANLVELLGMAWPFLLQGAMYTVLFAAVSMVLGLILGFSVAVVRVTKVPVVSQIAAVYVSAFRGTPLLVQIFVLYYGLPSVGIEFTPVTAGILALTLNVAAYLSESMRGAILGIDKGQWEAGLSVGLTWGQTLWNIITPQALRLAVPSLSNSLISLIKDTSLISVITVTELMLATKEVIAETFQPLPLYLAAAGIYWLLSALFERVQKALENRLTAPLRR

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Crispr_ID: NZ_CP050053_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP050053_2

4319444-4319671

Orphan

Consensus_repeat	Method
CTTGCTCCCTCCCCGTGTAGGGCGAATAACCGCTACGCGGTTATCCGCCA	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP050053_2

>merge|NZ_CP050053|2|4319444-4319671|PILER-CR
CCCGGCGTAGGACGAATAACCGCCAGCTCGGCAGAGGCTACGGCGGATAACGCCTGGGGGCGTTATTCGCCCTACCGCTTGCTCCCTCCCCGTGTAGGGCGAATAACCGCTACGCGGTTATCCGCCACCTCGGCAGGCGTTTCGGCGGATAACGCCTGGGGCGTTATTCGCCCTACCGCTTGCTCCCTCCCCGTGTAGGGCGAATAACCGCTACGCGGTTATCCGCCA

>NZ_CP050053|2|1|4319444-4319671|PILER-CR
CCCGGCGTAGGACGAATAACCGCCAGCTCGGCAGAGGCTACGGCGGATAA	CGCCTGGGGGCGTTATTCGCCCTACCGCTTGCTCCCTCCCCGTGTAGGGCGAAT
AACCGCTACGCGGTTATCCGCCACCTCGGCAGGCGTTTCGGCGGATAACG	CCTGGGGCGTTATTCGCCCTACCGCTTGCTCCCTCCCCGTGTAGGGCGAAT
AACCGCTACGCGGTTATCCGCCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP050053.1\|WP_003091874.1\|4313294_4314065_-\|crotonase/enoyl-CoA-hydratase-family-protein	unknown	unknown	gnl\|CDD\|236205
NZ_CP050053.1\|WP_003091873.1\|4312930_4313275_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|225981
NZ_CP050053.1\|WP_003102311.1\|4325689_4326514_-\|aliphatic-sulfonates-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|183055
NZ_CP050053.1\|WP_003114490.1\|4316493_4317273_-\|class-II-aldolase/adducin-family-protein	unknown	unknown	gnl\|CDD\|235916
NZ_CP050053.1\|WP_003102323.1\|4317401_4318088_-\|LrgB-family-protein	unknown	unknown	gnl\|CDD\|224265
NZ_CP050053.1\|WP_003114489.1\|4315208_4315502_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP050053.1\|WP_003091899.1\|4324915_4325254_+\|HopJ-type-III-effector-protein	unknown	unknown	gnl\|CDD\|378082
NZ_CP050053.1\|WP_003119583.1\|4310655_4311399_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378964
NZ_CP050053.1\|WP_003091900.1\|4325433_4325649_-\|molybdopterin-binding-protein	unknown	unknown	gnl\|CDD\|226113
NZ_CP050053.1\|WP_003091885.1\|4318074_4318464_-\|CidA/LrgA-family-protein	unknown	unknown	gnl\|CDD\|224298
NZ_CP050053.1\|WP_003111015.1\|4322100_4322658_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225765
NZ_CP050053.1\|WP_003091895.1\|4322768_4323473_+\|dihydromonapterin-reductase	unknown	unknown	gnl\|CDD\|180586
NZ_CP050053.1\|WP_003111019.1\|4314181_4315093_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187611
NZ_CP050053.1\|WP_003091898.1\|4324552_4324864_+\|DUF1244-domain-containing-protein	unknown	unknown	gnl\|CDD\|226023
NZ_CP050053.1\|WP_003091897.1\|4324052_4324424_+\|dihydroneopterin-triphosphate-2'-epimerase	unknown	unknown	gnl\|CDD\|183053
NZ_CP050053.1\|WP_003147159.1\|4319989_4321006_-\|IS110-like-element-ISPa11-family-transposase	unknown	unknown	gnl\|CDD\|226077
NZ_CP050053.1\|WP_003102328.1\|4315600_4316497_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP050053.1\|WP_003102335.1\|4311489_4312896_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274522
NZ_CP050053.1\|WP_003102319.1\|4321368_4321821_-\|flavodoxin	unknown	unknown	gnl\|CDD\|168208
NZ_CP050053.1\|WP_003091896.1\|4323490_4324051_+\|GTP-cyclohydrolase-I-FolE	unknown	unknown	gnl\|CDD\|237149

Protein	Function_ID	Function_description	E-value
NZ_CP050053.1\|WP_003091874.1\|4313294_4314065_-\|crotonase/enoyl-CoA-hydratase-family-protein	gnl\|CDD\|236205	PRK08259, PRK08259, crotonase/enoyl-CoA hydratase family protein.	2.19023e-155
NZ_CP050053.1\|WP_003091873.1\|4312930_4313275_+\|cupin-domain-containing-protein	gnl\|CDD\|225981	COG3450, COG3450, Predicted enzyme of the cupin superfamily [General function prediction only].	8.31479e-48
NZ_CP050053.1\|WP_003102311.1\|4325689_4326514_-\|aliphatic-sulfonates-ABC-transporter-ATP-binding-protein	gnl\|CDD\|183055	PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional.	3.88487e-166
NZ_CP050053.1\|WP_003114490.1\|4316493_4317273_-\|class-II-aldolase/adducin-family-protein	gnl\|CDD\|235916	PRK07044, PRK07044, aldolase II superfamily protein; Provisional.	1.76467e-159
NZ_CP050053.1\|WP_003102323.1\|4317401_4318088_-\|LrgB-family-protein	gnl\|CDD\|224265	COG1346, LrgB, Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane].	2.0025e-93
NZ_CP050053.1\|WP_003091899.1\|4324915_4325254_+\|HopJ-type-III-effector-protein	gnl\|CDD\|378082	pfam08888, HopJ, HopJ type III effector protein. Pathovars of Pseudomonas syringae interact with their plant hosts via the action of Hrp outer protein (Hop) effector proteins, injected into plant cells by the type III secretion system. The proteins in this family are called HopJ after the original member HopPmaJ.	4.35687e-54
NZ_CP050053.1\|WP_003119583.1\|4310655_4311399_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378964	pfam12833, HTH_18, Helix-turn-helix domain.	3.89695e-17
NZ_CP050053.1\|WP_003091900.1\|4325433_4325649_-\|molybdopterin-binding-protein	gnl\|CDD\|226113	COG3585, MopI, Molybdopterin-binding protein [Coenzyme metabolism].	5.68345e-18
NZ_CP050053.1\|WP_003091885.1\|4318074_4318464_-\|CidA/LrgA-family-protein	gnl\|CDD\|224298	COG1380, COG1380, Putative effector of murein hydrolase LrgA [General function prediction only].	3.74785e-31
NZ_CP050053.1\|WP_003111015.1\|4322100_4322658_+\|hypothetical-protein	gnl\|CDD\|225765	COG3224, COG3224, Uncharacterized protein conserved in bacteria [Function unknown].	1.18537e-84
NZ_CP050053.1\|WP_003091895.1\|4322768_4323473_+\|dihydromonapterin-reductase	gnl\|CDD\|180586	PRK06483, PRK06483, dihydromonapterin reductase; Provisional.	3.29755e-150
NZ_CP050053.1\|WP_003111019.1\|4314181_4315093_-\|SDR-family-oxidoreductase	gnl\|CDD\|187611	cd05353, hydroxyacyl-CoA-like_DH_SDR_c-like, (3R)-hydroxyacyl-CoA dehydrogenase-like, classical(c)-like SDRs. Beta oxidation of fatty acids in eukaryotes occurs by a four-reaction cycle, that may take place in mitochondria or in peroxisomes. (3R)-hydroxyacyl-CoA dehydrogenase is part of rat peroxisomal multifunctional MFE-2, it is a member of the NAD-dependent SDRs, but contains an additional small C-terminal domain that completes the active site pocket and participates in dimerization. The atypical, additional C-terminal extension allows for more extensive dimerization contact than other SDRs. MFE-2 catalyzes the second and third reactions of the peroxisomal beta oxidation cycle. Proteins in this subgroup have a typical catalytic triad, but have a His in place of the usual upstream Asn. This subgroup also contains members identified as 17-beta-hydroxysteroid dehydrogenases, including human peroxisomal 17-beta-hydroxysteroid dehydrogenase type 4 (17beta-HSD type 4, aka MFE-2, encoded by HSD17B4 gene) which is involved in fatty acid beta-oxidation and steroid metabolism. This subgroup also includes two SDR domains of the Neurospora crassa and Saccharomyces cerevisiae multifunctional beta-oxidation protein (MFP, aka Fox2). SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	5.71079e-146
NZ_CP050053.1\|WP_003091898.1\|4324552_4324864_+\|DUF1244-domain-containing-protein	gnl\|CDD\|226023	COG3492, COG3492, Uncharacterized protein conserved in bacteria [Function unknown].	2.30637e-55
NZ_CP050053.1\|WP_003091897.1\|4324052_4324424_+\|dihydroneopterin-triphosphate-2'-epimerase	gnl\|CDD\|183053	PRK11245, folX, dihydroneopterin triphosphate 2'-epimerase.	3.45838e-76
NZ_CP050053.1\|WP_003102319.1\|4321368_4321821_-\|flavodoxin	gnl\|CDD\|168208	PRK05723, PRK05723, flavodoxin; Provisional.	5.35164e-98
NZ_CP050053.1\|WP_003102328.1\|4315600_4316497_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	2.05112e-20
NZ_CP050053.1\|WP_003102335.1\|4311489_4312896_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|274522	TIGR03329, Phn_aa_oxid, putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.	1.89748e-57
NZ_CP050053.1\|WP_003147159.1\|4319989_4321006_-\|IS110-like-element-ISPa11-family-transposase	gnl\|CDD\|226077	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	3.79496e-53
NZ_CP050053.1\|WP_003091896.1\|4323490_4324051_+\|GTP-cyclohydrolase-I-FolE	gnl\|CDD\|237149	PRK12606, PRK12606, GTP cyclohydrolase I; Reviewed.	1.62465e-124

>NZ_CP050053.1|WP_003091885.1|4318074_4318464_-|CidA/LrgA-family-protein
MLPPLVRRLSRLAAELAVLIAFWWAGGWLAKAIGLPLPGGVVGLAALLLLFASGLLRPAWLQAGAGLLLAEMLLFFIPALMSLLDYGALLRSEGWRILLVIMLSTLLVMLVTAVSVEWMCRWRARHESR
>NZ_CP050053.1|WP_003102323.1|4317401_4318088_-|LrgB-family-protein
MSLDKQALFWLAATVGGYLLSRQLYRRVKWYWLSPIVFVPVLLYALAIPTHTRYADYARDTNWLVALLGPATVAFAIPIWQQRELLMRHWPALLAGMFAGTAVAIGSSWALAQALALDGQVTLSLLPRSITTPFAMEMSHDLGGVPELTAAFVMITGVFGAVIGGTLLRVLRLRTPLARGALFGVGAHGAGTSRAYEFGGEEGSAAGLLMVLTGLFNLLVAPLVAHCL
>NZ_CP050053.1|WP_003114490.1|4316493_4317273_-|class-II-aldolase/adducin-family-protein
MTAVHSLPADVQAQVSAAEWQTRVDLAACYRLVALHGWDDLIFTHISAKVPGTEDFLINPFGLMFHEITASSLVKVDASGKKLMDSPYEINPAGYTIHSAVHEVRHDVECVLHTHTAAGIAVSCQKQGLLPLSQQSLFVLSSLSYHAYEGVALNHEEKARLQADLGASNFLILPNHGLLTCGGSIADTFLMMFTLQRACEVQVMAQSGGAELIHIPGQILAGARDMIAGVMRSKTGMGGQLAWPALLRKLDQQNPGYRQ
>NZ_CP050053.1|WP_003102328.1|4315600_4316497_-|alpha/beta-hydrolase
MTAALPGIPLEAWRRRGRTLDFKGFPIRYWEAGQGRPLLLIHGFPSAAWDWHYLWEPLAQRYRVLVCDLLGFGDSAKPRAHRYSLLEQADLQQALLGRLGIDEPLHVLAHDYGDSVAQELLARHHEGRLRLASCVFLNGGLFPETHRPVLSQKLLLSPLGGLFGRLFDRRALARNFAKVFGPRSQPGETELDAFWSLIESNQGQRVMHRLIRYIVDRREQRERWVAALQHGGVPLRVIDGAVDPISGAHMVERYRQLVADADCVLLDGIGHYPQIEAPAAVLEHYLAFRARLDDSEFS
>NZ_CP050053.1|WP_003114489.1|4315208_4315502_-|hypothetical-protein
MHDPVSPLRAFDEGSWLFRQMVQAQPFIRQSGMVLAELGLLLALGLGYLCWQEGSRWYAVGAGLALLGSLLLVVVRHNYDWWLFKLGPRGRLYIPFD
>NZ_CP050053.1|WP_003111019.1|4314181_4315093_-|SDR-family-oxidoreductase
MSDALRFDDQVVIVTGAGGGLGRAHALLFAKHGARVVVNDLGGSTHGEGASASAADKVVAEIRAAGGTAVANHDSVTDGGRIVENALDAFGRVDVVVNNAGILRDKTFHKMEDADWDLVYQVHVEGAYKVTRAAWPHLREQAYGRVVFTSSTSGIYGNFGQSNYGMAKLGLYGLTRTLALEGRKNNILVNAIAPTGGTRMTEGLIPPQVFEQLKPELVSPLVVYLGSSACEDTSGLYEVGGGWIGKVRWERSLGFGFDPKAGFDAEDVAAHWQQICDFENAAHPADNVEALREMMANLQKHAL
>NZ_CP050053.1|WP_003091874.1|4313294_4314065_-|crotonase/enoyl-CoA-hydratase-family-protein
MSVIVERNGPVTTLVIARPERRNAVDRPTAQALADALREFEADDTARVAVLTGSGGNFCAGADLAAVAEDGERRNRLEAEGDGPMGPSRMQLGKPLIAAIEGYAVAGGLELALLADLRVMAEDAICGVFCRRFGVPLIDGGSVRLPRIVGQGRALDLILTGRPVKADEALQIGLANRVVPSGSARAEAEELAAELAAFPQTCMLADRASVYAQWELSFDVALANEFQGGLAVIESGETLEGAQRFKDGEGRHGRFE
>NZ_CP050053.1|WP_003091873.1|4312930_4313275_+|cupin-domain-containing-protein
MALTLLKNTAGADLGAASPVAVPLGEPVAQTRAYAVERTDQVETGIWECTPGRWRRQIVEQEFCHFLQGRCTFTPDGGETIRIEAGDALLLPENSLGVWDVQETVRKSYVIIHR
>NZ_CP050053.1|WP_003102335.1|4311489_4312896_+|FAD-dependent-oxidoreductase
MSAWRHLSLWMNQLDDPLEARPSLEESLEVDVAIVGAGYTGLWTAYYLKRRAPQLRVAIVEAETAGFGASGRNGGWLMGNLLGEDGLLAGLPPERRRAGYDLLHGIPDEVARVLQEEGIDCDYRKGGVLYCAARYPEQERRLRAYLHDLYAEGLDESDYRWLTPQELDQQLRIPGSYGAIHSPHCATIQPARLARGLARAVERLGVRLFEKSRVLHWQRGLLRTERGELRAEWIVPAVEGYAASLPPLGHYQLPVQSLLVATEPLPSSVWAEIGLERGQAFSEFSRQVTYGQRTADDRLAFGARGGYRFGGKLRSDFSLDDEEVGLRRYLFGELFPLLKDARISHTWGGNLGMARRFRPHMLLDRASGIALSGGYGGEGVGASNLGGRTLAALILGEDSELLRQPWVLGERPLDSLARWEPEPCRWLGYNAIIRSFVHEDRVLADPHSAPWRRSLAQTLAAGMESLMR
>NZ_CP050053.1|WP_003119583.1|4310655_4311399_+|helix-turn-helix-domain-containing-protein
MRYHLSWKHRDIDAVMALYHPEVEYNDFFQNRRMRLADLREYVEATMPKGPDESLEHTDRIRFDGDTAFIQYRLRVTLSGRLASFRASEAITVRDGLIWRINEYASLVHESGGGAQAGGDGRPPASRLGLSAKQLSLLARDLEHYFQQAQPYLDPDLDLTQVANATGYTRNQISYLLNQVLGLSFYQYVNQTRLQHLLGQLSGELPGRVDELAFAAGFNSLSAFYRCFRQHTGQSPREYLKRLSSRR
>NZ_CP050053.1|WP_003147159.1|4319989_4321006_-|IS110-like-element-ISPa11-family-transposase
MNLSRIGLDLAKQVFQVHGVDRHEHVVCRRQLKRAQVRDFFRQLPPCLVAMEACGSAHYWARELRELGHTVRLIAPQFVKPYVKGDKHDAHDAEAICEAASRPSMRYVPVKSAEQQAVQSMHRVRSRLVRARTALCNEVRGLLGEFGLIATRRGRAATMALLETVMATEPAPLPAPMGELLRELKDELQTLEARIARLERQIQAHVRGDARIQRLLAVEGIGPISASAVAASAGDARQFRTGRQFAAWLGLVPRQHSTGGQQRLGNISKRGDTYLRTLLIHGARAVVRCCANKTDARSRWLQGLLQRRPANVVAVALANKNARILWALLSRETCYRPG
>NZ_CP050053.1|WP_003102319.1|4321368_4321821_-|flavodoxin
MKVAILSGSVYGTAEEVARHAQKLLSAAGLEASHLPRASLDELKAFAPEAFLVVTSTTGMGELPDNLQPLYYAIRDQLPAWHGLPGGVIGLGDSSYGDTFCGGGEQVRELFGELGVREVLPMLRLDASETVTPETDAEPWLAEFAAALKG
>NZ_CP050053.1|WP_003111015.1|4322100_4322658_+|hypothetical-protein
MSTAPVTLLVARRVAAGRYRDFLAWQREGEALAADFPGYLGSGALAPPAGGDEFQMIFRFADDATLAAWAHSASRQAWLERGQGLFDEPREHRAHGLAAWFDDNRKPPRWKQSVAIWLAFFPVSLAFNLGAGPYLGELSLAARVLLSTLVLTPLMTYWFIPLSSRLLAPWLHRRPQRAASLPEAH
>NZ_CP050053.1|WP_003091895.1|4322768_4323473_+|dihydromonapterin-reductase
MATAPILITGASQRVGLHCARRLLADGESVIVSYRSERPALDELRQAGALTLHADFASEAGIFAFIGALRQHTDSLRAIVHNASDWVAETPGHEAEAFQQLFSVHMLAPYLINLHCAELLERSQPADIVHLTDDVARKGSARRIAYCASKAGLDNLTLSFAARFAPRIKVNAISPALVMFNDGDDAEYRARTLAKSALGIEPGPEVIYQSLRYLLDNPYVTGTTLTVNGGRHVK
>NZ_CP050053.1|WP_003091896.1|4323490_4324051_+|GTP-cyclohydrolase-I-FolE
MNPALSQHYREILVGLGEDPQREGLLDTPKRAAKAMQYLCHGYGQTLEEIVNGALFASDNDEMVIVRDIELYSLCEHHLLPFIGKAHVAYIPTGKVLGLSKVARIVDMFARRLQIQENLTRQIAEAVRQVTSAAGVAVVIEAQHMCMMMRGVEKQNSQMFTSVMLGAFRDSNTTRQEFLQLIGRSK
>NZ_CP050053.1|WP_003091897.1|4324052_4324424_+|dihydroneopterin-triphosphate-2'-epimerase
MPRLEPGMARIRVKDLRLRTFIGIKEEEILNKQDVLINLTILYPAADAVEVNDIEHALNYRTITKAIIRHVEENRFALLERMTQEILDLVMENPAVRYAEVEVDKPHALRFAESVSITLAGHR
>NZ_CP050053.1|WP_003091898.1|4324552_4324864_+|DUF1244-domain-containing-protein
MTAANLTEQQRLELEAAAFRTLVHHLQTRKDVQNIDLMNLAGFCRNCLSKWYKAAADDLGVEVSNDQAREEIYGMPYAEWKAKYQKEASPEQQAAFAKSQGNA
>NZ_CP050053.1|WP_003091899.1|4324915_4325254_+|HopJ-type-III-effector-protein
MTLTDFRARLRSEHHLFTDTLAFIAEHYSYTPSAFDNGSVSNPAGQNEGSCKTLGFAILEGLSLEETLLAFGEHYRAVRDNPEGDDHANIRALQQTGLAGVHFERQPLSRRG
>NZ_CP050053.1|WP_003091900.1|4325433_4325649_-|molybdopterin-binding-protein
MTIKAINVRNQFKGTVKEIIEGPVLSEIDVQTAAGIVTSVITTRSVKELELAIGSEVIAFVKSTEVSIAKL
>NZ_CP050053.1|WP_003102311.1|4325689_4326514_-|aliphatic-sulfonates-ABC-transporter-ATP-binding-protein
MNAHNAALGGTPQRLKRGIPLALRGVARRFGEREVLKDIDLLVPAGQFVAIVGRSGCGKSTLLRLLAGLDQPSRGELLAGSAALAEAREDTRLMFQDSRLLPWKRVIDNVGLGLRGDWRAKALQALRAVGLAERANEWPAALSGGQKQRVALARALIHEPRLLLLDEPLGALDALTRIEMQQLIEGLWREHGFTVLLVTHDVSEAVAVADRVILIEDGEIGLDLPVELPRPRSRGSARLAALEAEVLNRVLAQPELPPQPEPVSPLPTQLRWAL

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Click the colored protein region to show detailed information

Crispr_ID: NZ_CP050053_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP050053_3

5916983-5917183

Orphan

Consensus_repeat	Method
GGCTTGGCCGCCGGTTTCGCCGCAGGCTTCGCAGCAGGCTTGGCTGCAGGCT	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP050053_3

>merge|NZ_CP050053|3|5916983-5917183|PILER-CR
TCGCCGCAGGCTTCGCAGCAGGAGCGGTGGCGGGCTTGGTTGCGGCAGGTTTCGCGGCTACGGGTTTCGCCGCAGGCTTGGCCGCCGGTTTCGCCGCAGGCTTCGCAGCCGGCTTGGCTGCAGGCTTCGCGGCCGCGGATTTCGCCACAGGCTTGGCCGCCGGTTTCGCCGCAGGCTTCGCAGCTGGCTTGGCTGCGGGCT

>NZ_CP050053|3|2|5916983-5917183|PILER-CR
TCGCCGCAGGCTTCGCAGCAGGAGCGGTGGCGGGCTTGGTTGCGGCAGGTTT	CGCGGCTACGGGTTTCGCCGCAGGCTTGGCCGCCGGTTTCGCCGCAGGCTTC
GCAGCCGGCTTGGCTGCAGGCTTCGCGGCCGCGGATTTCGCCACAGGCTTGG	CCGCCGGTTTCGCCGCAGGCTTC
GCAGCTGGCTTGGCTGCGGGCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP050053.1\|WP_003114031.1\|5923344_5924286_-\|hydroxymethylbilane-synthase	unknown	unknown	gnl\|CDD\|234612
NZ_CP050053.1\|WP_003099227.1\|5916417_5916897_+\|TIGR02444-family-protein	unknown	unknown	gnl\|CDD\|378196
NZ_CP050053.1\|WP_003115264.1\|5910247_5912149_-\|FTR1-family-protein	unknown	unknown	gnl\|CDD\|223744
NZ_CP050053.1\|WP_003099212.1\|5908476_5909145_+\|isoprenoid-biosynthesis-glyoxalase-ElbB	unknown	unknown	gnl\|CDD\|236980
NZ_CP050053.1\|WP_003099229.1\|5918077_5918707_+\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|223619
NZ_CP050053.1\|WP_003114037.1\|5914455_5916372_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|236729
NZ_CP050053.1\|WP_003099222.1\|5913112_5913871_-\|TerC-family-protein	unknown	unknown	gnl\|CDD\|223930
NZ_CP050053.1\|WP_003096365.1\|5912253_5912883_-\|LysE-family-transporter	unknown	unknown	gnl\|CDD\|182514
NZ_CP050053.1\|WP_003114032.1\|5922592_5923348_-\|uroporphyrinogen-III-synthase	unknown	unknown	gnl\|CDD\|235590
NZ_CP050053.1\|WP_003114030.1\|5926446_5927841_+\|argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|179143
NZ_CP050053.1\|WP_003099230.1\|5919530_5920022_-\|disulfide-bond-formation-protein-B	unknown	unknown	gnl\|CDD\|376848
NZ_CP050053.1\|WP_003114038.1\|5913877_5914456_-\|mechanosensitive-ion-channel-family-protein	unknown	unknown	gnl\|CDD\|223740
NZ_CP050053.1\|WP_003096392.1\|5921435_5922566_-\|heme-biosynthesis-operon-protein-HemX	unknown	unknown	gnl\|CDD\|225507
NZ_CP050053.1\|WP_003096404.1\|5925145_5926222_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225519
NZ_CP050053.1\|WP_003096397.1\|5924394_5925141_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225818
NZ_CP050053.1\|WP_003096359.1\|5909240_5909714_+\|thioesterase-family-protein	unknown	unknown	gnl\|CDD\|183276
NZ_CP050053.1\|WP_003096390.1\|5920200_5921439_-\|heme-biosynthesis-protein-HemY	unknown	unknown	gnl\|CDD\|225613
NZ_CP050053.1\|WP_003120370.1\|5918768_5919251_-\|sigma-D-regulator	unknown	unknown	gnl\|CDD\|236962
NZ_CP050053.1\|WP_003096354.1\|5907721_5908312_+\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP050053.1\|WP_003099218.1\|5909698_5910181_-\|YaiI/YqxD-family-protein	unknown	unknown	gnl\|CDD\|224585

Protein	Function_ID	Function_description	E-value
NZ_CP050053.1\|WP_003114031.1\|5923344_5924286_-\|hydroxymethylbilane-synthase	gnl\|CDD\|234612	PRK00072, hemC, porphobilinogen deaminase; Reviewed.	0
NZ_CP050053.1\|WP_003099227.1\|5916417_5916897_+\|TIGR02444-family-protein	gnl\|CDD\|378196	pfam09523, DUF2390, Protein of unknown function (DUF2390). Members of this family are bacterial hypothetical proteins, about 160 amino acids in length, found in various proteobacteria, including members of the genera Pseudomonas and Vibrio. The C-terminal region is poorly conserved and is not included in the model.	3.39212e-30
NZ_CP050053.1\|WP_003115264.1\|5910247_5912149_-\|FTR1-family-protein	gnl\|CDD\|223744	COG0672, FTR1, High-affinity Fe2+/Pb2+ permease [Inorganic ion transport and metabolism].	5.41493e-73
NZ_CP050053.1\|WP_003099212.1\|5908476_5909145_+\|isoprenoid-biosynthesis-glyoxalase-ElbB	gnl\|CDD\|236980	PRK11780, PRK11780, isoprenoid biosynthesis glyoxalase ElbB.	1.00373e-150
NZ_CP050053.1\|WP_003099229.1\|5918077_5918707_+\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|223619	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones].	1.51069e-63
NZ_CP050053.1\|WP_003114037.1\|5914455_5916372_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|236729	PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional.	0
NZ_CP050053.1\|WP_003099222.1\|5913112_5913871_-\|TerC-family-protein	gnl\|CDD\|223930	COG0861, TerC, Membrane protein TerC, possibly involved in tellurium resistance [Inorganic ion transport and metabolism].	6.32642e-84
NZ_CP050053.1\|WP_003096365.1\|5912253_5912883_-\|LysE-family-transporter	gnl\|CDD\|182514	PRK10520, rhtB, homoserine/homoserine lactone efflux protein; Provisional.	3.20444e-64
NZ_CP050053.1\|WP_003114032.1\|5922592_5923348_-\|uroporphyrinogen-III-synthase	gnl\|CDD\|235590	PRK05752, PRK05752, uroporphyrinogen-III synthase; Validated.	7.59953e-151
NZ_CP050053.1\|WP_003114030.1\|5926446_5927841_+\|argininosuccinate-lyase	gnl\|CDD\|179143	PRK00855, PRK00855, argininosuccinate lyase; Provisional.	0
NZ_CP050053.1\|WP_003099230.1\|5919530_5920022_-\|disulfide-bond-formation-protein-B	gnl\|CDD\|376848	pfam02600, DsbB, Disulfide bond formation protein DsbB. This family consists of disulfide bond formation protein DsbB from bacteria. The DsbB protein oxidizes the periplasmic protein DsbA which in turn oxidizes cysteines in other periplasmic proteins in order to make disulfide bonds. DsbB acts as a redox potential transducer across the cytoplasmic membrane and is an integral membrane protein. DsbB posses six cysteines four of which are necessary for it proper function in vivo.	3.808e-38
NZ_CP050053.1\|WP_003114038.1\|5913877_5914456_-\|mechanosensitive-ion-channel-family-protein	gnl\|CDD\|223740	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	3.25938e-16
NZ_CP050053.1\|WP_003096392.1\|5921435_5922566_-\|heme-biosynthesis-operon-protein-HemX	gnl\|CDD\|225507	COG2959, HemX, Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism].	9.71617e-117
NZ_CP050053.1\|WP_003096404.1\|5925145_5926222_-\|sensor-histidine-kinase	gnl\|CDD\|225519	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms].	8.2566e-73
NZ_CP050053.1\|WP_003096397.1\|5924394_5925141_-\|response-regulator-transcription-factor	gnl\|CDD\|225818	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms].	1.01281e-65
NZ_CP050053.1\|WP_003096359.1\|5909240_5909714_+\|thioesterase-family-protein	gnl\|CDD\|183276	PRK11688, PRK11688, thioesterase family protein.	1.14778e-80
NZ_CP050053.1\|WP_003096390.1\|5920200_5921439_-\|heme-biosynthesis-protein-HemY	gnl\|CDD\|225613	COG3071, HemY, Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism].	7.18928e-150
NZ_CP050053.1\|WP_003120370.1\|5918768_5919251_-\|sigma-D-regulator	gnl\|CDD\|236962	PRK11718, PRK11718, sigma D regulator.	5.54856e-78
NZ_CP050053.1\|WP_003096354.1\|5907721_5908312_+\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	3.14231e-42
NZ_CP050053.1\|WP_003099218.1\|5909698_5910181_-\|YaiI/YqxD-family-protein	gnl\|CDD\|224585	COG1671, COG1671, Uncharacterized protein conserved in bacteria [Function unknown].	1.57723e-68

>NZ_CP050053.1|WP_003099227.1|5916417_5916897_+|TIGR02444-family-protein
MTGNVWKFAVDVYARPGVETACLALQEQGADVCLLLVAAWLGRRGVSCSKERAQILENAARPWRETVIEPLRRLRCAWREAATHDACLAELREEMKAQELRAEREHLQRLADLATAWLEGQEANRSADAWLQACSRDICTEAERRALLVLGSAALQTAP
>NZ_CP050053.1|WP_003114037.1|5914455_5916372_-|ATP-binding-cassette-domain-containing-protein
MIRLLNLTLQRGPQRLLEAAELTLHAGQKAGLIGANGAGKSSLFALLRGQLGQDAGDCLLPADWRIAHMRQEVDTLDRLAVDYVLDGDSRLREIQAALAVAEAAHDGSALARLHTELDNADGYTADARARKLLAGLGFSSEQMERRVGDFSGGWRMRLNLAQALMCPSDLLLLDEPTNHLDLDAILWLEEWLKGYPGTLVLISHDRDFLDAVVDHVVHLENRKLTLYRGGYSAFERTRAERLAQQQQAYEKQQAQRAHMESFIARFKAKATKARQAQSRIKALERLEELAPAHVDSPFNFSFRESDKISRPLLDLGEGRLGYGDKAVLEKVKLQLVPGARIGLLGPNGAGKSTLIKTLAGDLPELGGRLLRGENLAIGYFAQHQLDSLDPQASPLLHLQRIAPGEREQTLKDFLGGFDFRGVRVDEPVLNFSGGEKARLALALIAWQKPNLLLLDEPTNHLDLEMRLALTMALQEFSGAVLVVSHDRHLLKSTTDEFLLVADGRVVPFDGDLDDYARWLVDYRARKAPQAETAPGAPTERTDKRAQRQAAAALRQQLAPHKREADKLERELGGLHEKLAAIEARLGDSALYDVSRKDELRELLSEQSSLKVREGELEERWLEALETLEALQKELEASE
>NZ_CP050053.1|WP_003114038.1|5913877_5914456_-|mechanosensitive-ion-channel-family-protein
MEDLQVLTQTWSGPLVVAMQILLILLVAWLLQRLVRRTVTRIGERYPVPPELLLPLRGGLRWLIMVSALIMVLERLGVSAEVLWTALTGFAAVAAVAFFAIWSVLSNLFCALLIFTVGPFRIGDRVELIDSADKPGVTGRVVAINLLYTTLEETLEDGSPGPLLQIPNSLFFQKAVRRWRGPGFSTPTKNGK
>NZ_CP050053.1|WP_003099222.1|5913112_5913871_-|TerC-family-protein
MEWLASPEIWVAFLTLTALEIVLGIDNIIFISILVGRLPPAQQPKARFFGLALAMGTRILLLLSITWVMRLTTDLFHLFGQGISGRDLILFFGGLFLLFKSTMEIYHSLEGAEEEQKSGGKVHGFMGIIVQIAIIDIIFSLDSVITAVGLVQNVPVMVAAIVISVGVMMLAAGTISDFIEKHPSLKMLALSFLIVVGTVLVAESFEVHVPKGYVYFAMAFSLAVEALNIRLRGALARKRGEEPVKLRKGSPD
>NZ_CP050053.1|WP_003096365.1|5912253_5912883_-|LysE-family-transporter
MLVSTWFAFFLACWAISLSPGAGAIASMSCGLQYGFARGYWNALGLQIGLALQIAIVAAGVGALLATSALAFSLIKWFGVAYLVYLAVRQWQAPPQALSTDGERPLGRPLTLVLRGFLVNASNPKAVIFMLAVLPQFIDPHQPLLAQYLIMGGTMIVVDLIVMAGYTGLAARVLRVLRSPRQQKLVNRTFASLFVGAAGLLATVRRAPL
>NZ_CP050053.1|WP_003115264.1|5910247_5912149_-|FTR1-family-protein
MHPPKILLWLLPLVCAFSLGALADTAVDPSQALHLLSYLAADYPPTVADGKIVDPSEYQEQVEFVGNLQALVLTLPMRPERAELERGVASLRQAIEQRLPGRDVALQARNLEARVADIYQVVQTPAITPDPSRAAPIYAQQCAICHGDAGKGDGPAGIGLEPPPANLTDRQRLDHLSLYDLRNVIGLGVAGTDMPAFADQLDERQRWDLASYVAGLSAGSAQPDKAHAYPLATLATQTPAEVAEHDGEAAAESFRALRAHPPLEQRGPGQLIDYTAATLDKSFAVYREGDRDQAYDLSVAAYLEGFELVESSLDNVDADLRRSTEKQLMAYRQALRDGLPETQVAQQLELAKGKLAEAAKQLGGDSLSFSISFVSALLILLREGVEAILVLAAILAFLRNTGQESAVRGVHVGWGLAFVAGFATWALAAYVIDIGGAQRELMEGFTSLFACVMVLWLGVWMHDRRHAAAWQDYIRSSLVGGGGRFGFAVLAFFSVYRELFEVILFYETLWLQAGPAGHNAVIGGAATAVVLLIGLAWVILRGSAKLPLGLFFSINAALLCALSVVFAGHGVIALQEAGVIGTRPVPFFDFDWLGIKADAYSLSAQAMALVAIALLYGRSRIVERRRAAANAAD
>NZ_CP050053.1|WP_003099218.1|5909698_5910181_-|YaiI/YqxD-family-protein
MRIWIDADACPKAAKELVCKFALKRKLEVWMVAGQPQVKPPFACVRLVVVESGMDAADDYLVEQAEPGDLAICSDVPLADRLIKKQVAALDPRGREFDARNMGDKLAMRNLMADLRDQGQMGGGQAPYGERDRQAFANALDRLLTRLQREADLRASQPHR
>NZ_CP050053.1|WP_003096359.1|5909240_5909714_+|thioesterase-family-protein
MSETPSPALPDDVHQLVADFFQRIPFNRMLGIRVASLGRERVVLDLPMKDELIGNFVQGILHGGVISSLLDVTGGAMALIGALERHRELPGHERMARLSKLGTIDLRVDYLRPGRGRTFTAHAVPLRSGNKVAVVRSELHSDDGTLVAVGTGTYLCG
>NZ_CP050053.1|WP_003099212.1|5908476_5909145_+|isoprenoid-biosynthesis-glyoxalase-ElbB
MHKKVAVILSGCGVYDGAEIHESVITLLRLSQRGAEAQCFAPNIAQHHVVNHLTGEEMPESRNVLVESARIARGEVKDLREARAEDYDALIVPGGFGAAKNLSDFAINGAQCQVQPDVLALAKAFAEAGKPVGLICIAPAMAAKIYGAGVQCTIGNDADTADALKQMGAEHIDAPVDEIVEDSARKLVTTPAYMLAQSIAEAASGINKLVDRVLELVDQDKA
>NZ_CP050053.1|WP_003096354.1|5907721_5908312_+|DedA-family-protein
MMLQQFLQDFGYFALFLGTFFEGETILVLAGFLAFRGYMQLDTVILTAFLGSYAGDQLWYFLGRRHGRRLLARKPRWQKLGDKALDHVRRHPDLWVLSFRFVYGLRTVMPVAIGLSGYPPARYLLLNGIGAIVWAAALGSAAYYFGSVLEGMLGNIKKYELMVLGGLIVLGLLLWLWRRFKTPRGNGAGGNADKSE
>NZ_CP050053.1|WP_003099229.1|5918077_5918707_+|FKBP-type-peptidyl-prolyl-cis-trans-isomerase
MPRRLFIGLFLLPLPLFAAPPKDELAYAVGARLGMRLQQEMPGLELSELLLGLRQAYRGEALEIPPERIEQLLLQHENATTETPRTTPAEARFLANEKARFGVRELTGGVLVSELRRGQGNGIGAATQVHVRYRGLLADGQVFDQSESAEWFALDSVIEGWRTALRAMPVGARWRVVIPSAQAYGHEGAGDLIPPDAPLVFEIDLLGFR
>NZ_CP050053.1|WP_003120370.1|5918768_5919251_-|sigma-D-regulator
MLESCRNAQERWGGVHQLIDRWLHERQQLVQAFDALSGIQAPAPNAEELQHFCQLLLDYVSAGHFEVYEQLTAEGKAFGDQRGLELAKQIFPRLEAITESALNFNDRCDNGDCREGACLIAELKVLRQQLHERFELEDCLIEVLHNAHSQSGAEGSAVPV
>NZ_CP050053.1|WP_003099230.1|5919530_5920022_-|disulfide-bond-formation-protein-B
MPLASPRQLFLLAFLACVAIMGGALYLEHVVGLEACPLCVVQRIFFILIGLTCLAGAIQGPGLRGRRIYSVLVFLLALGGGATAARQVWLQTVPLDQLPACLPSLDYMMQALPFQEVIRLVLHGTADCAQVSWTLFTLSIPEWSLLAFVAYLGFSIVQFLRRA
>NZ_CP050053.1|WP_003096390.1|5920200_5921439_-|heme-biosynthesis-protein-HemY
MRRIYLLVLAVVLVATLVGLAISEQAGYVLIAYKSFRYESSLWSFLALLAVVWLLVVLVRLVLRLLGSSGRVVNPWSRYNRRRRVQMAEHSGLRDLGEGNWPQALRHLRRAAEMGERPLMHYLGAARAANELERYDEADDLLNRAREREPDAQLLVGLTRAQLLINRGDYPQARNTLEELHGLQPQHRTVLRLMQQLYVTQHDWQALCVLLPELRKERVLKDSELRDLERRAWVASLQEAGERGLNEGETALQPLTQRWQNVPSALRADPAIVAGYAAQLLRLGAEEEAEEVLRHALKQGFDATLVQLYGQVRGRDPGKQLQAAEGWLKEHPNDPGLLLTLGRLCLINKLWGKAREYLEASLSFQRSAETCAELGRLLAQLGEVERSNQLFQEGLVLLDRRTPGLPVVVAGI
>NZ_CP050053.1|WP_003096392.1|5921435_5922566_-|heme-biosynthesis-operon-protein-HemX
MSEAVTPQDDARTSTSTPSPVAPDASRRSGTATGLALLALLVGVAGLGAGGWSFWQVQQLQGTERDQLAQLEDARGKTESLAQRNQQLAARLDALPTADELEARRRLVVELQGDQQHLSEQLKKVLGQSRQQWRLAEAEHLLRLASLRLSALQDVGSATELVQGADDILRAQNDPGAYAARAKLAASLEALRALPEPDRTGLFVQLAALREQVNQLQPLTPTFKEGESGASNVAWGDGNSTWELWWEKISRYIRIDFNAGQDIRPLLAGEQLAQVRLTIGLALEQAQWAALNGKQEVYEQALKQAQDVLDGYFNVELADSRALKLRIDELAKQPVTVQVPDLAPALSALQAYVSRREAAGNLVPEAQAAPATEGRP
>NZ_CP050053.1|WP_003114032.1|5922592_5923348_-|uroporphyrinogen-III-synthase
MSGWRLLLTRPDEECAALAASLGEAGVHSSSLPLLAIDPLEETPEQRTLMLDLDRYCAVVVVSKPAARLGLERLDRYWPQPPQQTWCSVGAATAAILEAYGLDVTYPEQGDDSEALLALPAFQDSLRVHDPKVLIMRGEGGREFLAERLRGQGVQVDYLPLYRRRAPDYPAGELLARVRAERLNGLVVSSGQGLQNLYQLAAADWPEIGRLPLFVPSPRVAEMARELGAQRVIDCRGASAPALLAALTSAA
>NZ_CP050053.1|WP_003114031.1|5923344_5924286_-|hydroxymethylbilane-synthase
MSSREIRIATRQSALALWQAEYVKARLEQAHPGLTVTLLPMTSRGDKLLDAPLAKIGGKGLFVKELETALLEGAADIAVHSMKDVPMDFPEGLGLYTICEREDPRDAFVSNTYASLEQLPAGSVVGTSSLRRQAQLLARRPDLQIRFLRGNVNTRLAKLDAGEYDAIILAAAGLIRLGFESRIRSSISVDDSLPAGGQGAVGIECRTADSDLHALLEPLHHTDTALRVTAERALNKRLNGGCQVPIACYAIREGDQLWLRGLVGQPDGTQLLRAEGRAPLAEAEALGVRVAEDLLEQGAEAILEAVYGEAGHP
>NZ_CP050053.1|WP_003096397.1|5924394_5925141_-|response-regulator-transcription-factor
MNVLIVDDEPLARERLARLVGQLDGYRVLEPSASNGEEALTLIDSLKPDIVLLDIRMPGLDGLQVAARLCEREAPPAVIFCTAHDEFALEAFQVSAVGYLVKPVRSEDLAEALKKASRPNRVQLAALTKPPASGGSGPRSHISARTRKGIELIPLEEVIFFIADHKYVTLRHAQGEVLLDEPLKALEDEFGERFVRIHRNALVARERIERLQRTPLGHFQLYLKGLDGDALTVSRRHVAGVRRLMHQL
>NZ_CP050053.1|WP_003096404.1|5925145_5926222_-|sensor-histidine-kinase
MPIRFKPGRSTRPAVQDDFFIPELCEAEALFTLVLLAELLVLVLVLAEPMTPSFNWVRLALASLFVQWIVLLSAALFCRLRPLLARLPVALAGSACCLLVVALTLGCTAVAEHYQLGGELTRAGEVNLYLRHALIALIMSALVLRYFYLQSQWRRQQQAELQARLESLQARIRPHFLFNSLNSIASLIELDPLKAEHAVLDLSDLFRASLAKPGTLVSWEEELALARRYLSIEQYRLGDRLQLDWQVHGVPANLPIPQLTLQPLLENALIYGIQPRVEGGLVQVEAVYREGVFQLCVSNPYDEALESPPSKGTRQALHNIDARLGALFGPKASLSVERRDGRHYTCLRYPCARLMQEA
>NZ_CP050053.1|WP_003114030.1|5926446_5927841_+|argininosuccinate-lyase
MSVEKTNQSWGGRFSEPVDAFVARFTASVDFDKRLYRHDIMGSIAHATMLAKVGVLSDAERDAIVDGLQQIQAEIEAGSFDWRVDLEDVHMNIEARLTDRIGVTGKKLHTGRSRNDQVATDIRLWLRDEIDTILAEITRLQEGLLGLAEAEADTIMPGFTHLQTAQPVTFGHHLLAWFEMLGRDYERLVDCRKRVNRMPLGSAALAGTTYPIQREITCQLLGFDAVGGNSLDGVSDRDFAIEFCAAASLAMMHLSRFSEELVLWTSAQFQFIDLPDRFCTGSSIMPQKKNPDVPELVRGKSGRVFGALTGLLTLMKGQPLAYNKDNQEDKEPLFDAADTLRDSLRAFADMVPAIRPRREIMREAARRGFSTATDLADYLVRKGLPFRDCHEIVGHAVKYGVDSGKDLAEMSLDELRRFSEQIDADVFDVLTLEGSVNARDHIGGTAPNQVRAAVARGRKLLAQR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP050053_2	2.2\|4319598\|51\|NZ_CP050053\|PILER-CR	4319598-4319648	51	NZ_CP050053.1	4321145-4321195	0	1.0
NZ_CP050053_2	2.2\|4319598\|51\|NZ_CP050053\|PILER-CR	4319598-4319648	51	NZ_CP050053.1	4321246-4321296	0	1.0

1. spacer 2.2|4319598|51|NZ_CP050053|PILER-CR matches to position: 4321145-4321195, mismatch: 0, identity: 1.0

cctcggcaggcgtttcggcggataacgcctggggcgttattcgccctaccg	CRISPR spacer
cctcggcaggcgtttcggcggataacgcctggggcgttattcgccctaccg	Protospacer
***************************************************

2. spacer 2.2|4319598|51|NZ_CP050053|PILER-CR matches to position: 4321246-4321296, mismatch: 0, identity: 1.0

cctcggcaggcgtttcggcggataacgcctggggcgttattcgccctaccg	CRISPR spacer
cctcggcaggcgtttcggcggataacgcctggggcgttattcgccctaccg	Protospacer
***************************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP050053_3	3.2\|5917139\|23\|NZ_CP050053\|PILER-CR	5917139-5917161	23	AP014204	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C76-MedDCM-OCT-S42-C31, * SEQUENCING IN PROGRESS *	32703-32725	2	0.913
NZ_CP050053_3	3.2\|5917139\|23\|NZ_CP050053\|PILER-CR	5917139-5917161	23	AP014203	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C76-MedDCM-OCT-S35-C25, * SEQUENCING IN PROGRESS *	10290-10312	2	0.913
NZ_CP050053_2	2.1\|4319494\|54\|NZ_CP050053\|PILER-CR	4319494-4319547	54	MK511017	Pseudomonas phage CF23, partial genome	32-85	4	0.926

1. spacer 3.2|5917139|23|NZ_CP050053|PILER-CR matches to AP014204 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C76-MedDCM-OCT-S42-C31, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 2, identity: 0.913

tcgcggccgcggatttcgccaca	CRISPR spacer
tcgcggccgatgatttcgccaca	Protospacer
*********  ************

2. spacer 3.2|5917139|23|NZ_CP050053|PILER-CR matches to AP014203 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C76-MedDCM-OCT-S35-C25, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 2, identity: 0.913

tcgcggccgcggatttcgccaca	CRISPR spacer
tcgcggccgatgatttcgccaca	Protospacer
*********  ************

3. spacer 2.1|4319494|54|NZ_CP050053|PILER-CR matches to MK511017 (Pseudomonas phage CF23, partial genome) position: , mismatch: 4, identity: 0.926

cagctcggcagaggctacggcggataacgcctgggggcgttattcgccctaccg	CRISPR spacer
ccccacagcagaggctacggcggataacgcctgggggcgttattcgccctaccg	Protospacer
*  * *.***********************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

638831 : 721073

Pseudomonas_phage(39.02%)

plate,tRNA,tail

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003109020.1\|638831_639857_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	3.7e-109	58.1
WP_003085061.1\|639935_640505_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
WP_003099587.1\|640588_640942_+	dihydroneopterin aldolase	NA	NA	NA	NA
WP_003085067.1\|640932_641475_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
WP_003113214.1\|641447_642680_-	multifunctional CCA addition/repair protein	A0A076G5T8	Escherichia_phage	3.5e-77	43.1
WP_003085071.1\|642723_643230_-	DUF4136 domain-containing protein	NA	NA	NA	NA
WP_003099581.1\|643323_644877_-	SpoVR family protein	NA	NA	NA	NA
WP_003099579.1\|644873_646145_-	YeaH/YhbH family protein	A0A140HLI1	Bacillus_phage	4.2e-09	37.2
WP_003085078.1\|646245_648168_-	PrkA family serine protein kinase	NA	NA	NA	NA
WP_003085081.1\|648446_648779_-	thiosulfate sulfurtransferase GlpE	NA	NA	NA	NA
WP_003113213.1\|648822_649674_-	symmetrical bis(5'-nucleosyl)-tetraphosphatase	A0A2H4J0P0	uncultured_Caudovirales_phage	1.1e-08	33.3
WP_003085085.1\|649673_650054_-	Co2+/Mg2+ efflux protein ApaG	NA	NA	NA	NA
WP_003113212.1\|650090_650897_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA
WP_003109023.1\|651012_651999_-	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA
WP_003115345.1\|651995_653288_-	peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_003113209.1\|653268_656043_-	LPS-assembly protein LptD	NA	NA	NA	NA
WP_003113208.1\|656169_657186_+	phosphotransferase	NA	NA	NA	NA
WP_003099549.1\|657182_657857_+	nucleotidyltransferase family protein	NA	NA	NA	NA
WP_003099547.1\|657858_658617_+	DnaJ domain-containing protein	NA	NA	NA	NA
WP_003099546.1\|658617_659679_-	alpha/beta hydrolase family protein	NA	NA	NA	NA
WP_003113207.1\|659830_662224_+	PAS domain S-box protein	NA	NA	NA	NA
WP_003085103.1\|662269_662902_+	response regulator transcription factor	NA	NA	NA	NA
WP_003085106.1\|663030_664065_+	polyamine ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003085109.1\|664298_665408_+	polyamine ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	7.8e-28	34.4
WP_003099539.1\|665463_666510_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003113206.1\|666624_667872_+	ABC transporter permease	NA	NA	NA	NA
WP_003099535.1\|667977_668808_+	ABC transporter permease	NA	NA	NA	NA
WP_003085122.1\|668931_669606_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
WP_003113205.1\|669605_670424_+	phosphoglycolate phosphatase	NA	NA	NA	NA
WP_003113204.1\|670496_671975_+	anthranilate synthase component I	NA	NA	NA	NA
WP_003113203.1\|672293_672608_-	transcription regulatory protein PrtN	NA	NA	NA	NA
WP_003113202.1\|672707_673478_-	helix-turn-helix transcriptional regulator	A0A1B0Z078	Pseudomonas_phage	1.4e-71	59.1
WP_003085132.1\|673935_674136_+	repressor PtrB	W6ATC1	Enterobacter_phage	3.7e-05	58.3
WP_003113201.1\|674183_674543_+	hypothetical protein	NA	NA	NA	NA
WP_003118908.1\|674906_675356_+	hypothetical protein	B5TK61	Pseudomonas_phage	5.0e-26	53.3
WP_003113200.1\|675377_675893_+	hypothetical protein	A0A2H4J881	uncultured_Caudovirales_phage	4.1e-32	42.9
WP_003085141.1\|675889_676447_+\|plate	phage baseplate assembly protein V	A0A2H4JG06	uncultured_Caudovirales_phage	4.6e-45	71.1
WP_003113199.1\|676599_676926_+	bacteriophage protein	A0A2H4JA09	uncultured_Caudovirales_phage	2.4e-30	60.2
WP_003085151.1\|676922_677810_+	bacteriophage protein	S4TNY7	Salmonella_phage	5.3e-88	59.8
WP_010895511.1\|677802_678336_+\|tail	phage tail protein I	Q9ZXK7	Pseudomonas_virus	3.0e-62	64.6
WP_003113198.1\|678337_680413_+	bacteriophage protein	Q9ZXK6	Pseudomonas_virus	5.1e-198	50.2
WP_010895512.1\|680409_680868_+	hypothetical protein	NA	NA	NA	NA
WP_003113197.1\|680910_682071_+\|tail	phage tail sheath family protein	Q38068	Phage_PS17	2.0e-188	83.2
WP_003085175.1\|682083_682587_+\|tail	phage major tail tube protein	Q7M2A5	Pseudomonas_phage	8.0e-65	73.5
WP_003085178.1\|682601_682946_+\|tail	phage tail assembly protein	NA	NA	NA	NA
WP_003113195.1\|683115_685353_+	hypothetical protein	NA	NA	NA	NA
WP_003113194.1\|685362_686235_+\|tail	phage tail protein	A0A2H4J875	uncultured_Caudovirales_phage	2.5e-74	51.4
WP_003101635.1\|686209_686416_+\|tail	tail protein X	A0A2H4J9Z9	uncultured_Caudovirales_phage	2.3e-18	64.2
WP_003113193.1\|686473_687463_+	phage late control D family protein	A0A2H4JBF6	uncultured_Caudovirales_phage	7.5e-107	55.8
WP_003113192.1\|687495_688125_+	glycoside hydrolase family 19 protein	A0A125RNP1	Pseudomonas_phage	1.6e-86	78.0
WP_003118918.1\|688121_688484_+	hypothetical protein	H2BDA0	Pseudomonas_phage	1.9e-15	47.9
WP_003118919.1\|688480_688738_+	hypothetical protein	A0A125RNP3	Pseudomonas_phage	8.3e-18	64.6
WP_003113190.1\|689053_689548_+	hypothetical protein	A0A286S1Q8	Klebsiella_phage	1.4e-45	56.5
WP_003113189.1\|689559_689907_+\|tail	phage tail assembly chaperone family protein, TAC	NA	NA	NA	NA
WP_003113188.1\|689936_690191_+	hypothetical protein	A0A2H4PI34	Pseudomonas_phage	6.3e-10	38.4
WP_003113187.1\|690237_692073_+\|tail	phage tail tape measure protein	A0A0S2SYD9	Pseudomonas_phage	1.2e-28	36.2
WP_003113186.1\|692065_692407_+\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	1.4e-17	40.0
WP_003113185.1\|692414_693110_+\|tail	phage minor tail protein L	A0A1B0VNE0	Pseudomonas_phage	9.7e-69	49.8
WP_003113184.1\|693112_693883_+	C40 family peptidase	A0A2D1GNP8	Pseudomonas_phage	4.2e-81	55.6
WP_003113183.1\|693937_694540_+\|tail	tail assembly protein	A0A1V0E8A0	Vibrio_phage	2.2e-53	57.8
WP_003113182.1\|694598_698213_+\|tail	phage tail protein	A0A0S2SYC5	Pseudomonas_phage	0.0e+00	54.7
WP_003118927.1\|698448_699237_+	hypothetical protein	NA	NA	NA	NA
WP_003115342.1\|699260_700352_+	hypothetical protein	A0A0S2SY45	Pseudomonas_phage	1.3e-46	36.9
WP_003113180.1\|700351_700687_+	hypothetical protein	NA	NA	NA	NA
WP_010895513.1\|700667_700898_+	hypothetical protein	A0A1W6JT87	Pseudomonas_phage	3.3e-18	62.7
WP_003113178.1\|700993_702046_+	hypothetical protein	A0A0H5AXZ9	Pseudomonas_phage	4.6e-62	52.2
WP_003113177.1\|702045_702348_+	hypothetical protein	A0A0H5B141	Pseudomonas_phage	4.4e-34	71.0
WP_003113176.1\|702344_702575_+	hypothetical protein	C8ZKF3	Pseudomonas_phage	8.2e-25	71.6
WP_003113175.1\|702993_703599_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	4.6e-75	66.3
WP_003085203.1\|703600_704650_+	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.8e-111	57.8
WP_003113174.1\|704646_705483_+	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	2.1e-70	56.9
WP_003085214.1\|705544_706189_-	cAMP-activated global transcriptional regulator CRP	NA	NA	NA	NA
WP_003085219.1\|706460_706883_+	OsmC family protein	NA	NA	NA	NA
WP_003101641.1\|707202_707997_+	adenosylmethionine decarboxylase	NA	NA	NA	NA
WP_003085224.1\|708051_708699_-	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA
WP_003085225.1\|708798_709137_-	histidine triad nucleotide-binding protein	NA	NA	NA	NA
WP_003113173.1\|709215_710697_+	AAA family ATPase	U5XJW0	Phormidium_phage	6.0e-68	34.0
WP_003113172.1\|710736_711537_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_003113171.1\|711597_712674_-	DUF805 domain-containing protein	NA	NA	NA	NA
WP_003085244.1\|712795_713764_-	nitronate monooxygenase	NA	NA	NA	NA
WP_003113170.1\|713780_714203_-	protoporphyrinogen oxidase HemJ	NA	NA	NA	NA
WP_003113169.1\|714493_715528_+	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
WP_003085249.1\|715527_716247_+	hypothetical protein	NA	NA	NA	NA
WP_003120826.1\|716247_716670_+	polymer-forming cytoskeletal protein	NA	NA	NA	NA
WP_003085254.1\|716747_717098_+	iron-sulfur cluster insertion protein ErpA	A0A2H4N7M3	Lake_Baikal_phage	3.0e-26	53.2
WP_003113168.1\|717151_718243_-	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA
WP_003129241.1\|718245_719589_-	peptidoglycan DD-metalloendopeptidase family protein	O03937	Lactobacillus_phage	3.0e-18	44.1
WP_003113167.1\|719873_721073_+\|tRNA	tyrosine--tRNA ligase	NA	NA	NA	NA

DBSCAN-SWA_2

749046 : 786846

Pseudomonas_phage(57.14%)

coat,integrase,tRNA

attL 747728:747787|attR 759798:759879

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
747728:747787	attL	NA	NA	NA	NA
WP_003113529.1\|749046_750096_-	serine/threonine protein kinase	G9BWE0	Planktothrix_phage	1.0e-61	50.0
WP_169917322.1\|750098_751196_-	serine/threonine-protein phosphatase	NA	NA	NA	NA
WP_003115921.1\|751725_751998_+	hypothetical protein	NA	NA	NA	NA
WP_033992920.1\|752209_752500_+	DUF5447 family protein	Q56VP7	Pseudomonas_phage	8.7e-56	97.9
WP_003115097.1\|753014_753449_+	hypothetical protein	Q56VP5	Pseudomonas_phage	1.2e-61	98.6
WP_003115979.1\|753570_753822_+	hypothetical protein	NA	NA	NA	NA
WP_003125072.1\|753834_754083_+\|coat	phage coat protein B	Q56VP2	Pseudomonas_phage	2.0e-32	92.7
WP_134794798.1\|754218_755478_+	attachment protein	Q56VP1	Pseudomonas_phage	1.4e-52	57.9
WP_003114150.1\|755482_755839_+	DUF2523 domain-containing protein	Q56VP0	Pseudomonas_phage	7.9e-59	100.0
WP_003114151.1\|755842_757117_+	hypothetical protein	Q56VN9	Pseudomonas_phage	2.8e-199	87.1
WP_004352686.1\|757346_758639_+	hypothetical protein	Q56VN8	Pseudomonas_phage	1.8e-241	92.3
WP_003114691.1\|758635_759637_+\|integrase	tyrosine-type recombinase/integrase	F1BUS9	Erwinia_phage	7.6e-75	46.8
WP_003099270.1\|760089_761190_-	redox-regulated ATPase YchF	NA	NA	NA	NA
759798:759879	attR	NA	NA	NA	NA
WP_003099278.1\|761230_761815_-\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_003099279.1\|761856_762471_-	50S ribosomal protein L25/general stress protein Ctc	NA	NA	NA	NA
WP_003099281.1\|762587_763529_-	ribose-phosphate pyrophosphokinase	A0A1V0SHF7	Hokovirus	4.1e-46	35.4
WP_003099284.1\|763695_764544_-	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_003095005.1\|764545_765163_-	lipoprotein localization protein LolB	NA	NA	NA	NA
WP_004352693.1\|765167_766940_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_003095001.1\|767083_768352_+\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_003114692.1\|768369_769452_+	peptide chain release factor 1	A0A0S4KWG0	Pseudomonas_phage	5.6e-07	48.3
WP_003114694.1\|769453_770284_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
WP_003114696.1\|770277_771036_+	molybdopterin-synthase adenylyltransferase MoeB	NA	NA	NA	NA
WP_003099300.1\|771025_771823_+	glutamate racemase	NA	NA	NA	NA
WP_003099307.1\|771956_772478_+	acyloxyacyl hydrolase	A0A2H4J0I5	uncultured_Caudovirales_phage	1.4e-59	69.8
WP_003114697.1\|772603_774049_-	deoxyribodipyrimidine photo-lyase	A0A167RC11	Powai_lake_megavirus	3.1e-45	27.8
WP_003094990.1\|774045_774945_-	MerR family transcriptional regulator	Q9EYF2	Enterobacteria_phage	8.5e-17	39.1
WP_003099314.1\|774954_775911_-	DUF523 and DUF1722 domain-containing protein	NA	NA	NA	NA
WP_003114698.1\|776063_777047_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_003114699.1\|777460_778378_+	TIGR01777 family protein	NA	NA	NA	NA
WP_003099324.1\|778374_779397_+	ferrochelatase	NA	NA	NA	NA
WP_003099328.1\|779676_781050_+	MFS transporter	NA	NA	NA	NA
WP_003099330.1\|781051_781999_-\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_003114701.1\|781995_784368_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_003114703.1\|784384_785173_-	molecular chaperone	NA	NA	NA	NA
WP_003099337.1\|785191_785734_-\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_003146046.1\|785733_786267_-\|coat	spore coat U domain-containing protein	NA	NA	NA	NA
WP_003099340.1\|786297_786846_-\|coat	spore coat U domain-containing protein	NA	NA	NA	NA

DBSCAN-SWA_3

1275460 : 1282877

Pseudomonas_phage(100.0%)

coat,integrase

attL 1271419:1271445|attR 1283822:1283848

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1271419:1271445	attL	NA	NA	NA	NA
WP_010895517.1\|1275460_1275751_+	DUF5447 family protein	Q56VP7	Pseudomonas_phage	7.4e-55	96.9
WP_003115132.1\|1276266_1276701_+	phage destabilizing protein	Q56VP5	Pseudomonas_phage	5.1e-60	86.1
WP_003115979.1\|1276822_1277074_+	hypothetical protein	NA	NA	NA	NA
WP_003125072.1\|1277086_1277335_+\|coat	phage coat protein B	Q56VP2	Pseudomonas_phage	2.0e-32	92.7
WP_010895519.1\|1277470_1278733_+\|coat	phage coat protein A	Q56VP1	Pseudomonas_phage	6.7e-52	56.0
WP_003114150.1\|1278737_1279094_+	DUF2523 domain-containing protein	Q56VP0	Pseudomonas_phage	7.9e-59	100.0
WP_010895520.1\|1279097_1280372_+	hypothetical protein	Q56VN9	Pseudomonas_phage	2.1e-202	88.7
WP_003115206.1\|1280601_1281894_+	hypothetical protein	Q56VN8	Pseudomonas_phage	2.8e-247	94.2
WP_003114154.1\|1281893_1282877_+\|integrase	tyrosine-type recombinase/integrase	Q56VN7	Pseudomonas_phage	4.7e-93	52.6
1283822:1283848	attR	NA	NA	NA	NA

DBSCAN-SWA_4

3098929 : 3137391

Enterobacteria_phage(33.33%)

plate,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003122697.1\|3098929_3100261_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_003104701.1\|3100320_3100797_-	hypothetical protein	NA	NA	NA	NA
WP_003089493.1\|3101005_3101551_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_003089494.1\|3101573_3103058_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_003089495.1\|3103131_3103629_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_003114519.1\|3103641_3104067_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_003114518.1\|3104050_3105844_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_003114517.1\|3105807_3106824_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_003114516.1\|3106825_3109375_+	type VI secretion system ATPase TssH	H6X3M6	Enterobacteria_phage	1.2e-76	29.4
WP_010895609.1\|3109396_3109969_+	hypothetical protein	NA	NA	NA	NA
WP_003104930.1\|3110128_3110317_+	hypothetical protein	NA	NA	NA	NA
WP_003114515.1\|3110316_3112323_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	7.7e-42	29.5
WP_003114514.1\|3112333_3112870_+	toxin-antitoxin system YwqK family antitoxin	NA	NA	NA	NA
WP_003089513.1\|3112892_3113288_-	DUF4280 domain-containing protein	NA	NA	NA	NA
WP_003110901.1\|3113564_3114206_+	response regulator transcription factor	NA	NA	NA	NA
WP_003115787.1\|3114406_3115612_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003114512.1\|3116028_3118344_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA
WP_003089521.1\|3118340_3118811_-	(2Fe-2S)-binding protein	NA	NA	NA	NA
WP_003104944.1\|3119075_3119312_-	hypothetical protein	NA	NA	NA	NA
WP_003089526.1\|3119606_3119849_+	DUF1654 domain-containing protein	NA	NA	NA	NA
WP_003104946.1\|3119915_3121067_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA
WP_003114511.1\|3121163_3122084_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003089535.1\|3122125_3122449_-	transcriptional repressor	NA	NA	NA	NA
WP_003115642.1\|3122629_3124918_-	acylase	NA	NA	NA	NA
WP_003114509.1\|3125040_3126372_-	lysine N(6)-hydroxylase/L-ornithine N(5)-oxygenase family protein	NA	NA	NA	NA
WP_003103620.1\|3126504_3126984_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_003115643.1\|3127147_3128143_+	FecR family protein	NA	NA	NA	NA
WP_003114507.1\|3128243_3129419_+	pyoverdine export/recycling transporter periplasmic adaptor subunit PvdR	NA	NA	NA	NA
WP_003114506.1\|3129418_3131410_+	pyoverdine export/recycling transporter ATP-binding/permease subunit PvdT	G9BWD6	Planktothrix_phage	4.1e-35	39.3
WP_010895610.1\|3131415_3132840_+	pyoverdine export/recycling transporter outer membrane subunit OmpQ	NA	NA	NA	NA
WP_003139293.1\|3132888_3134523_-	pyoverdine maturation tyrosinase PvdP	NA	NA	NA	NA
WP_003103610.1\|3134738_3136085_+\|tail	pyoverdine-tailoring dipeptidase-like protein PvdM	NA	NA	NA	NA
WP_003114503.1\|3136107_3137391_+\|tail	pyoverdine-tailoring periplasmic protein PvdN	NA	NA	NA	NA

DBSCAN-SWA_5

3425516 : 3432410

uncultured_Caudovirales_phage(83.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003090386.1\|3425516_3426185_+	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	1.5e-90	82.1
WP_003090387.1\|3426295_3426691_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	2.7e-47	72.1
WP_003090389.1\|3426687_3427047_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.4e-34	61.7
WP_003090391.1\|3427046_3427352_+	sulfurtransferase complex subunit TusB	NA	NA	NA	NA
WP_003119979.1\|3427348_3427684_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	1.5e-38	69.4
WP_003108776.1\|3427680_3428664_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	9.3e-142	74.3
WP_003097628.1\|3428751_3429726_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_003113366.1\|3429730_3431128_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_003097631.1\|3431129_3432410_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	8.2e-98	45.4

DBSCAN-SWA_6

4528935 : 4537964

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003092260.1\|4528935_4529976_-	recombinase RecA	A0A0S2MVG1	Bacillus_phage	1.5e-113	59.5
WP_003092262.1\|4530109_4530616_-	CinA family protein	B5TK85	Pseudomonas_phage	8.1e-57	76.0
WP_003113874.1\|4530763_4531771_+	TolB family protein	NA	NA	NA	NA
WP_003113873.1\|4531896_4534464_+	DNA mismatch repair protein MutS	A0A1V0SGG8	Hokovirus	3.2e-24	22.1
WP_003092272.1\|4534530_4534854_+	ferredoxin family protein	NA	NA	NA	NA
WP_003113871.1\|4535280_4536285_-	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	7.0e-36	37.3
WP_003115226.1\|4536389_4537283_-	peptidoglycan DD-metalloendopeptidase family protein	A0A0S2SXL7	Bacillus_phage	3.0e-06	34.3
WP_003098558.1\|4537328_4537964_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.0e-40	52.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP050053

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection