Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP052103 Ralstonia solanacearum strain FJAT15252.F50 plasmid Plas1, complete sequence 0 crisprs NA 0 0 4 0
NZ_CP052102 Ralstonia solanacearum strain FJAT15252.F50 chromosome, complete genome 1 crisprs RT,cas3,WYL,csa3,DEDDh,DinG 0 1 14 0

Results visualization

1. NZ_CP052103
Click the left colored region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 29663 : 41755 11 Ralstonia_phage(42.86%) NA NA
DBSCAN-SWA_2 699681 : 731205 31 Ralstonia_phage(27.27%) transposase NA
DBSCAN-SWA_3 1095205 : 1105221 10 Bacillus_phage(33.33%) transposase NA
DBSCAN-SWA_4 1271083 : 1321786 35 uncultured_Caudovirales_phage(28.57%) tRNA,transposase,plate NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP052102
Click the left colored region to show detailed information
CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP052102_1 2359844-2359954 Orphan NA
1 spacers

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP052102_1 1.1|2359871|57|NZ_CP052102|CRISPRCasFinder 2359871-2359927 57 NZ_CP025986 Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence 1200220-1200276 0 1.0

1. spacer 1.1|2359871|57|NZ_CP052102|CRISPRCasFinder matches to NZ_CP025986 (Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence) position: , mismatch: 0, identity: 1.0

tgggaagcgctgttggcggcgcgcccggacggggcgccctgctccggcagcggaggc	CRISPR spacer
tgggaagcgctgttggcggcgcgcccggacggggcgccctgctccggcagcggaggc	Protospacer
*********************************************************

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 215327 : 248259 43 Acidithiobacillus_phage(56.25%) transposase,terminase,head,capsid,portal NA
DBSCAN-SWA_2 253287 : 335462 60 Ralstonia_phage(33.33%) transposase,protease,tail NA
DBSCAN-SWA_3 394687 : 474937 103 Ralstonia_virus(58.0%) transposase,terminase,head,plate,integrase,holin,capsid,tail,portal attL 436755:436800|attR 474976:475021
DBSCAN-SWA_4 909214 : 962688 51 Lactobacillus_phage(16.67%) transposase,coat,protease NA
DBSCAN-SWA_5 979694 : 989833 9 Hokovirus(14.29%) NA NA
DBSCAN-SWA_6 1600394 : 1678199 83 Ralstonia_phage(42.31%) tRNA,transposase,terminase,head,plate,holin,integrase,capsid,tail,portal attL 1606137:1606156|attR 1690357:1690376
DBSCAN-SWA_7 1870488 : 2010048 150 Pseudomonas_phage(12.96%) tRNA,transposase,terminase,head,plate,integrase,protease,capsid,tail,portal attL 1880329:1880345|attR 1941947:1943162
DBSCAN-SWA_8 2193245 : 2200552 12 Ralstonia_phage(100.0%) coat NA
DBSCAN-SWA_9 2576819 : 2662628 88 Ralstonia_phage(36.96%) tRNA,terminase,head,plate,holin,integrase,protease,capsid,tail,portal attL 2608481:2608505|attR 2650972:2650996
DBSCAN-SWA_10 2727128 : 2799591 74 Ralstonia_phage(30.3%) transposase,terminase,head,protease,integrase,capsid,tail,portal attL 2735542:2735590|attR 2784354:2784402
DBSCAN-SWA_11 2923054 : 2931290 8 Planktothrix_phage(16.67%) NA NA
DBSCAN-SWA_12 2974170 : 2988276 12 Ralstonia_phage(55.56%) tail NA
DBSCAN-SWA_13 2996093 : 3047801 58 Acidithiobacillus_phage(45.45%) transposase,terminase,head,capsid,portal NA
DBSCAN-SWA_14 3834313 : 3897800 48 Klosneuvirus(22.22%) transposase,holin,protease,tail NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage