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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP052104 Ralstonia solanacearum strain FJAT15252.F1 chromosome, complete genome 1 crisprs RT,cas3,WYL,csa3,DEDDh,DinG 0 1 14 0
NZ_CP052105 Ralstonia solanacearum strain FJAT15252.F1 plasmid Plas1, complete sequence 0 crisprs NA 0 0 4 0

Results visualization

1. NZ_CP052104
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP052104_1 2359802-2359912 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP052104_1 1.1|2359829|57|NZ_CP052104|CRISPRCasFinder 2359829-2359885 57 NZ_CP025986 Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence 1200220-1200276 0 1.0

1. spacer 1.1|2359829|57|NZ_CP052104|CRISPRCasFinder matches to NZ_CP025986 (Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence) position: , mismatch: 0, identity: 1.0

tgggaagcgctgttggcggcgcgcccggacggggcgccctgctccggcagcggaggc	CRISPR spacer
tgggaagcgctgttggcggcgcgcccggacggggcgccctgctccggcagcggaggc	Protospacer
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Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 215327 : 248259 43 Acidithiobacillus_phage(56.25%) transposase,capsid,terminase,portal,head NA
DBSCAN-SWA_2 253287 : 335462 60 Ralstonia_phage(33.33%) transposase,tail,protease NA
DBSCAN-SWA_3 394687 : 474937 104 Ralstonia_virus(58.0%) plate,holin,integrase,transposase,capsid,tail,terminase,portal,head attL 436755:436800|attR 474976:475021
DBSCAN-SWA_4 909214 : 962688 51 Lactobacillus_phage(16.67%) transposase,coat,protease NA
DBSCAN-SWA_5 979694 : 989833 9 Hokovirus(14.29%) NA NA
DBSCAN-SWA_6 1600393 : 1678198 83 Ralstonia_phage(42.31%) plate,holin,integrase,transposase,capsid,tRNA,tail,terminase,portal,head attL 1606136:1606155|attR 1690356:1690375
DBSCAN-SWA_7 1870487 : 2010047 150 Pseudomonas_phage(12.96%) plate,portal,transposase,capsid,tRNA,tail,terminase,protease,integrase,head attL 1880328:1880344|attR 1941946:1943161
DBSCAN-SWA_8 2193202 : 2200509 12 Ralstonia_phage(100.0%) coat NA
DBSCAN-SWA_9 2576777 : 2662586 88 Ralstonia_phage(36.96%) plate,holin,integrase,capsid,tRNA,tail,terminase,protease,portal,head attL 2608439:2608463|attR 2650930:2650954
DBSCAN-SWA_10 2727086 : 2799549 74 Ralstonia_phage(31.25%) portal,integrase,transposase,capsid,tail,protease,terminase,head attL 2735500:2735548|attR 2784312:2784360
DBSCAN-SWA_11 2923012 : 2931248 8 Planktothrix_phage(16.67%) NA NA
DBSCAN-SWA_12 2974128 : 2988234 12 Ralstonia_phage(55.56%) tail NA
DBSCAN-SWA_13 2996051 : 3047759 58 Acidithiobacillus_phage(45.45%) transposase,capsid,terminase,portal,head NA
DBSCAN-SWA_14 3834262 : 3897749 48 Klosneuvirus(22.22%) transposase,tail,holin,protease NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP052105
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 29663 : 41755 11 Ralstonia_phage(42.86%) NA NA
DBSCAN-SWA_2 699679 : 731203 31 Ralstonia_phage(27.27%) transposase NA
DBSCAN-SWA_3 1095181 : 1105197 10 Bacillus_phage(33.33%) transposase NA
DBSCAN-SWA_4 1271035 : 1321738 35 uncultured_Caudovirales_phage(28.57%) plate,transposase,tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage