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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP052108 Ralstonia solanacearum strain FJAT15249.F1 chromosome, complete genome 1 crisprs RT,cas3,WYL,csa3,DEDDh,DinG 0 1 14 0
NZ_CP052109 Ralstonia solanacearum strain FJAT15249.F1 plasmid Plas1, complete sequence 0 crisprs NA 0 0 4 0

Results visualization

1. NZ_CP052108
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP052108_1 2359720-2359830 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP052108_1 1.1|2359747|57|NZ_CP052108|CRISPRCasFinder 2359747-2359803 57 NZ_CP025986 Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence 1200220-1200276 0 1.0

1. spacer 1.1|2359747|57|NZ_CP052108|CRISPRCasFinder matches to NZ_CP025986 (Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence) position: , mismatch: 0, identity: 1.0

tgggaagcgctgttggcggcgcgcccggacggggcgccctgctccggcagcggaggc	CRISPR spacer
tgggaagcgctgttggcggcgcgcccggacggggcgccctgctccggcagcggaggc	Protospacer
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Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 215324 : 248256 43 Acidithiobacillus_phage(56.25%) capsid,transposase,portal,head,terminase NA
DBSCAN-SWA_2 253284 : 335459 60 Ralstonia_phage(33.33%) protease,transposase,tail NA
DBSCAN-SWA_3 394684 : 474934 104 Ralstonia_virus(58.0%) plate,capsid,transposase,integrase,holin,tail,portal,head,terminase attL 436752:436797|attR 474973:475018
DBSCAN-SWA_4 909215 : 962689 51 Lactobacillus_phage(16.67%) protease,coat,transposase NA
DBSCAN-SWA_5 979695 : 989834 9 Hokovirus(14.29%) NA NA
DBSCAN-SWA_6 1600394 : 1678199 83 Ralstonia_phage(42.31%) plate,capsid,tRNA,transposase,integrase,holin,tail,portal,head,terminase attL 1606137:1606156|attR 1690357:1690376
DBSCAN-SWA_7 1870488 : 2010048 150 Pseudomonas_phage(12.96%) plate,tRNA,transposase,integrase,capsid,protease,tail,portal,head,terminase attL 1880329:1880345|attR 1941947:1943162
DBSCAN-SWA_8 2193123 : 2200430 12 Ralstonia_phage(100.0%) coat NA
DBSCAN-SWA_9 2576693 : 2662502 88 Ralstonia_phage(36.96%) plate,capsid,tRNA,integrase,holin,protease,tail,portal,head,terminase attL 2608355:2608379|attR 2650846:2650870
DBSCAN-SWA_10 2727002 : 2799465 74 Ralstonia_phage(31.25%) capsid,transposase,integrase,tail,terminase,portal,head,protease attL 2735416:2735464|attR 2784228:2784276
DBSCAN-SWA_11 2922928 : 2931164 8 Planktothrix_phage(16.67%) NA NA
DBSCAN-SWA_12 2974044 : 2988150 12 Ralstonia_phage(55.56%) tail NA
DBSCAN-SWA_13 2995967 : 3047675 58 Acidithiobacillus_phage(45.45%) capsid,transposase,portal,head,terminase NA
DBSCAN-SWA_14 3834188 : 3897675 48 Klosneuvirus(22.22%) protease,holin,transposase,tail NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP052109
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 29663 : 41755 11 Ralstonia_phage(42.86%) NA NA
DBSCAN-SWA_2 699681 : 731205 31 Ralstonia_phage(27.27%) transposase NA
DBSCAN-SWA_3 1095194 : 1105210 10 Bacillus_phage(33.33%) transposase NA
DBSCAN-SWA_4 1271072 : 1321775 35 uncultured_Caudovirales_phage(28.57%) plate,tRNA,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage