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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP052116 Ralstonia solanacearum strain FJAT1463.F1 chromosome, complete genome 1 crisprs RT,cas3,WYL,csa3,DEDDh,DinG 0 1 14 0
NZ_CP052117 Ralstonia solanacearum strain FJAT1463.F1 plasmid Plas1, complete sequence 0 crisprs NA 0 0 4 0

Results visualization

1. NZ_CP052116
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP052116_1 2359844-2359954 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP052116_1 1.1|2359871|57|NZ_CP052116|CRISPRCasFinder 2359871-2359927 57 NZ_CP025986 Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence 1200220-1200276 0 1.0

1. spacer 1.1|2359871|57|NZ_CP052116|CRISPRCasFinder matches to NZ_CP025986 (Ralstonia solanacearum strain RSCM plasmid p-unname2, complete sequence) position: , mismatch: 0, identity: 1.0

tgggaagcgctgttggcggcgcgcccggacggggcgccctgctccggcagcggaggc	CRISPR spacer
tgggaagcgctgttggcggcgcgcccggacggggcgccctgctccggcagcggaggc	Protospacer
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Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 215327 : 248259 43 Acidithiobacillus_phage(56.25%) terminase,capsid,head,transposase,portal NA
DBSCAN-SWA_2 253287 : 335462 60 Ralstonia_phage(33.33%) tail,protease,transposase NA
DBSCAN-SWA_3 394687 : 474937 104 Ralstonia_virus(58.0%) terminase,tail,plate,capsid,head,holin,transposase,integrase,portal attL 436755:436800|attR 474976:475021
DBSCAN-SWA_4 909214 : 962688 51 Lactobacillus_phage(16.67%) coat,protease,transposase NA
DBSCAN-SWA_5 979694 : 989833 9 Hokovirus(14.29%) NA NA
DBSCAN-SWA_6 1600394 : 1678199 83 Ralstonia_phage(42.31%) terminase,tail,plate,capsid,head,holin,transposase,integrase,tRNA,portal attL 1606137:1606156|attR 1690357:1690376
DBSCAN-SWA_7 1870488 : 2010048 150 Pseudomonas_phage(12.96%) terminase,tail,plate,capsid,head,protease,transposase,integrase,tRNA,portal attL 1880329:1880345|attR 1941947:1943162
DBSCAN-SWA_8 2193245 : 2200552 12 Ralstonia_phage(100.0%) coat NA
DBSCAN-SWA_9 2576817 : 2662626 88 Ralstonia_phage(36.96%) terminase,tail,plate,capsid,head,holin,protease,integrase,tRNA,portal attL 2608479:2608503|attR 2650970:2650994
DBSCAN-SWA_10 2727126 : 2799589 74 Ralstonia_phage(30.3%) terminase,tail,capsid,head,protease,transposase,integrase,portal attL 2735540:2735588|attR 2784352:2784400
DBSCAN-SWA_11 2923052 : 2931288 8 Planktothrix_phage(16.67%) NA NA
DBSCAN-SWA_12 2974168 : 2988274 12 Ralstonia_phage(55.56%) tail NA
DBSCAN-SWA_13 2996091 : 3047799 58 Acidithiobacillus_phage(45.45%) terminase,capsid,head,transposase,portal NA
DBSCAN-SWA_14 3834311 : 3897798 48 Klosneuvirus(22.22%) holin,tail,protease,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage
2. NZ_CP052117
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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 29663 : 41755 11 Ralstonia_phage(42.86%) NA NA
DBSCAN-SWA_2 699681 : 731205 31 Ralstonia_phage(27.27%) transposase NA
DBSCAN-SWA_3 1095183 : 1105199 10 Bacillus_phage(33.33%) transposase NA
DBSCAN-SWA_4 1271061 : 1321764 35 uncultured_Caudovirales_phage(28.57%) plate,transposase,tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage