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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP054361 Escherichia coli strain SCU-172 plasmid pSCU-172-8, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP054357 Escherichia coli strain SCU-172 plasmid pSCU-172-4, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP054360 Escherichia coli strain SCU-172 plasmid pSCU-172-7, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP054356 Escherichia coli strain SCU-172 plasmid pSCU-172-3, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP054362 Escherichia coli strain SCU-172 plasmid pSCU-172-9, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP054353 Escherichia coli strain SCU-172 chromosome, complete genome 5 crisprs c2c9_V-U4,DEDDh,DinG,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3 2 11 14 0
NZ_CP054359 Escherichia coli strain SCU-172 plasmid pSCU-172-6, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP054358 Escherichia coli strain SCU-172 plasmid pSCU-172-5, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP054354 Escherichia coli strain SCU-172 plasmid pSCU-172-1, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP054355 Escherichia coli strain SCU-172 plasmid pSCU-172-2, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. NZ_CP054353
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP054353_1 616118-616267 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP054353_2 2392568-2392691 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP054353_3 3073224-3073315 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP054353_4 3806486-3807307 Unclear I-E
13 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP054353_5 3833002-3833152 TypeI-E I-E
2 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
NZ_CP054353_4 4.13|3807246|33|NZ_CP054353|PILER-CR 3807246-3807278 33 NZ_CP054353.1 1556676-1556708 1 0.97
NZ_CP054353_4 4.26|3807247|32|NZ_CP054353|CRISPRCasFinder,CRT 3807247-3807278 32 NZ_CP054353.1 1556677-1556708 1 0.969

1. spacer 4.13|3807246|33|NZ_CP054353|PILER-CR matches to position: 1556676-1556708, mismatch: 1, identity: 0.97

agccaattgccatatatgccatcgccagcagcc	CRISPR spacer
agccaattgccatatatgctatcgccagcagcc	Protospacer
*******************.*************

2. spacer 4.26|3807247|32|NZ_CP054353|CRISPRCasFinder,CRT matches to position: 1556677-1556708, mismatch: 1, identity: 0.969

gccaattgccatatatgccatcgccagcagcc	CRISPR spacer
gccaattgccatatatgctatcgccagcagcc	Protospacer
******************.*************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP054353_3 3.1|3073250|40|NZ_CP054353|CRISPRCasFinder 3073250-3073289 40 NZ_CP041417 Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence 47951-47990 0 1.0
NZ_CP054353_5 5.2|3833092|32|NZ_CP054353|CRISPRCasFinder 3833092-3833123 32 NZ_KY515226 Salmonella enterica subsp. enterica serovar Derby strain S701 plasmid AnCo3, complete sequence 85141-85172 1 0.969
NZ_CP054353_5 5.2|3833092|32|NZ_CP054353|CRISPRCasFinder 3833092-3833123 32 NZ_KP763470 Salmonella enterica subsp. enterica serovar Typhimurium strain L946 plasmid pSTM_Phi, complete sequence 22393-22424 1 0.969
NZ_CP054353_5 5.2|3833092|32|NZ_CP054353|CRISPRCasFinder 3833092-3833123 32 NZ_CP014707 Salmonella enterica subsp. enterica serovar Anatum strain USMARC-1735 plasmid pSAN1-1735, complete sequence 58539-58570 1 0.969
NZ_CP054353_5 5.2|3833092|32|NZ_CP054353|CRISPRCasFinder 3833092-3833123 32 NZ_CP044180 Salmonella enterica subsp. enterica serovar Concord strain AR-0407 plasmid pAR-0407-3, complete sequence 1804-1835 1 0.969
NZ_CP054353_5 5.2|3833092|32|NZ_CP054353|CRISPRCasFinder 3833092-3833123 32 NZ_CP030187 Salmonella enterica strain SA20094620 plasmid pSA20094620.2, complete sequence 61477-61508 1 0.969
NZ_CP054353_5 5.2|3833092|32|NZ_CP054353|CRISPRCasFinder 3833092-3833123 32 CP053410 Salmonella enterica strain 2014K-0203 plasmid unnamed, complete sequence 71861-71892 1 0.969
NZ_CP054353_5 5.2|3833092|32|NZ_CP054353|CRISPRCasFinder 3833092-3833123 32 NZ_CP051133 Enterobacter hormaechei strain AMS-38 plasmid pAMS-38a, complete sequence 68553-68584 1 0.969
NZ_CP054353_2 2.1|2392611|38|NZ_CP054353|CRISPRCasFinder 2392611-2392648 38 NZ_CP043437 Enterobacter sp. LU1 plasmid unnamed 113727-113764 2 0.947
NZ_CP054353_4 4.26|3807247|32|NZ_CP054353|CRISPRCasFinder,CRT 3807247-3807278 32 MN693679 Marine virus AFVG_250M1046, complete genome 23321-23352 6 0.812
NZ_CP054353_4 4.26|3807247|32|NZ_CP054353|CRISPRCasFinder,CRT 3807247-3807278 32 MN694531 Marine virus AFVG_250M1045, complete genome 23321-23352 6 0.812
NZ_CP054353_4 4.17|3806698|32|NZ_CP054353|CRISPRCasFinder,CRT 3806698-3806729 32 NZ_CP007129 Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence 617816-617847 7 0.781
NZ_CP054353_4 4.4|3806697|33|NZ_CP054353|PILER-CR 3806697-3806729 33 NZ_CP007129 Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence 617816-617848 8 0.758
NZ_CP054353_4 4.17|3806698|32|NZ_CP054353|CRISPRCasFinder,CRT 3806698-3806729 32 NZ_CP022191 Yangia pacifica strain YSBP01 plasmid unnamed1, complete sequence 491374-491405 8 0.75
NZ_CP054353_4 4.22|3807003|32|NZ_CP054353|CRISPRCasFinder,CRT 3807003-3807034 32 NZ_CP043441 Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence 1076793-1076824 8 0.75
NZ_CP054353_4 4.24|3807125|32|NZ_CP054353|CRISPRCasFinder,CRT 3807125-3807156 32 NZ_CP029357 Azospirillum sp. CFH 70021 plasmid unnamed2 536482-536513 8 0.75
NZ_CP054353_4 4.19|3806820|32|NZ_CP054353|CRISPRCasFinder,CRT 3806820-3806851 32 NZ_CP045959 Salmonella enterica subsp. enterica serovar Birkenhead strain AUSMDU00010532 plasmid pAUSMDU00010532_01, complete sequence 26456-26487 9 0.719
NZ_CP054353_4 4.22|3807003|32|NZ_CP054353|CRISPRCasFinder,CRT 3807003-3807034 32 NC_007960 Nitrobacter hamburgensis X14 plasmid 2, complete sequence 170021-170052 9 0.719
NZ_CP054353_4 4.26|3807247|32|NZ_CP054353|CRISPRCasFinder,CRT 3807247-3807278 32 MK308676 Vibrio phage vB_VmeM-Yong MS31, complete genome 198014-198045 9 0.719
NZ_CP054353_4 4.26|3807247|32|NZ_CP054353|CRISPRCasFinder,CRT 3807247-3807278 32 MK308675 Vibrio phage vB_VmeM-Yong XC32, complete genome 198013-198044 9 0.719
NZ_CP054353_4 4.26|3807247|32|NZ_CP054353|CRISPRCasFinder,CRT 3807247-3807278 32 MK308674 Vibrio phage vB_VmeM-Yong XC31, complete genome 198013-198044 9 0.719
NZ_CP054353_5 5.2|3833092|32|NZ_CP054353|CRISPRCasFinder 3833092-3833123 32 AP014351 Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S39-C3, *** SEQUENCING IN PROGRESS *** 25417-25448 9 0.719
NZ_CP054353_4 4.13|3807246|33|NZ_CP054353|PILER-CR 3807246-3807278 33 MK308676 Vibrio phage vB_VmeM-Yong MS31, complete genome 198013-198045 10 0.697
NZ_CP054353_4 4.13|3807246|33|NZ_CP054353|PILER-CR 3807246-3807278 33 MK308675 Vibrio phage vB_VmeM-Yong XC32, complete genome 198012-198044 10 0.697
NZ_CP054353_4 4.13|3807246|33|NZ_CP054353|PILER-CR 3807246-3807278 33 MK308674 Vibrio phage vB_VmeM-Yong XC31, complete genome 198012-198044 10 0.697
NZ_CP054353_4 4.22|3807003|32|NZ_CP054353|CRISPRCasFinder,CRT 3807003-3807034 32 NC_005002 Salmonella enterica subsp. enterica serovar Enteritidis plasmid pB, complete sequence 751-782 11 0.656
NZ_CP054353_4 4.22|3807003|32|NZ_CP054353|CRISPRCasFinder,CRT 3807003-3807034 32 NC_019127 Salmonella enterica subsp. enterica serovar Enteritidis plasmid pVCM01, complete sequence 751-782 11 0.656
NZ_CP054353_4 4.22|3807003|32|NZ_CP054353|CRISPRCasFinder,CRT 3807003-3807034 32 HG796434 Uncultured bacterium plasmid pRGI01198 1387-1418 11 0.656
NZ_CP054353_4 4.22|3807003|32|NZ_CP054353|CRISPRCasFinder,CRT 3807003-3807034 32 NZ_MF156267 Escherichia coli strain 838B plasmid pBuzz, complete sequence 751-782 11 0.656
NZ_CP054353_4 4.23|3807064|32|NZ_CP054353|CRISPRCasFinder,CRT 3807064-3807095 32 NZ_CP021084 Deinococcus ficus strain CC-FR2-10 plasmid pDFI3, complete sequence 217831-217862 11 0.656
NZ_CP054353_4 4.26|3807247|32|NZ_CP054353|CRISPRCasFinder,CRT 3807247-3807278 32 NZ_CP043499 Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence 785798-785829 11 0.656
NZ_CP054353_4 4.26|3807247|32|NZ_CP054353|CRISPRCasFinder,CRT 3807247-3807278 32 NZ_CP011513 Paenibacillus peoriae strain HS311 plasmid unnamed, complete sequence 16848-16879 11 0.656

1. spacer 3.1|3073250|40|NZ_CP054353|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 0, identity: 1.0

gcgctgcgggtcattcttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
****************************************

2. spacer 5.2|3833092|32|NZ_CP054353|CRISPRCasFinder matches to NZ_KY515226 (Salmonella enterica subsp. enterica serovar Derby strain S701 plasmid AnCo3, complete sequence) position: , mismatch: 1, identity: 0.969

tcgacaatggataagttgacttcaggtctggg	CRISPR spacer
tcgacaatggataagttgacttccggtctggg	Protospacer
*********************** ********

3. spacer 5.2|3833092|32|NZ_CP054353|CRISPRCasFinder matches to NZ_KP763470 (Salmonella enterica subsp. enterica serovar Typhimurium strain L946 plasmid pSTM_Phi, complete sequence) position: , mismatch: 1, identity: 0.969

tcgacaatggataagttgacttcaggtctggg	CRISPR spacer
tcgacaatggataagttgacttccggtctggg	Protospacer
*********************** ********

4. spacer 5.2|3833092|32|NZ_CP054353|CRISPRCasFinder matches to NZ_CP014707 (Salmonella enterica subsp. enterica serovar Anatum strain USMARC-1735 plasmid pSAN1-1735, complete sequence) position: , mismatch: 1, identity: 0.969

tcgacaatggataagttgacttcaggtctggg	CRISPR spacer
tcgacaatggataagttgacttccggtctggg	Protospacer
*********************** ********

5. spacer 5.2|3833092|32|NZ_CP054353|CRISPRCasFinder matches to NZ_CP044180 (Salmonella enterica subsp. enterica serovar Concord strain AR-0407 plasmid pAR-0407-3, complete sequence) position: , mismatch: 1, identity: 0.969

tcgacaatggataagttgacttcaggtctggg	CRISPR spacer
tcgacaatggataagttgacttccggtctggg	Protospacer
*********************** ********

6. spacer 5.2|3833092|32|NZ_CP054353|CRISPRCasFinder matches to NZ_CP030187 (Salmonella enterica strain SA20094620 plasmid pSA20094620.2, complete sequence) position: , mismatch: 1, identity: 0.969

tcgacaatggataagttgacttcaggtctggg	CRISPR spacer
tcgacaatggataagttgacttccggtctggg	Protospacer
*********************** ********

7. spacer 5.2|3833092|32|NZ_CP054353|CRISPRCasFinder matches to CP053410 (Salmonella enterica strain 2014K-0203 plasmid unnamed, complete sequence) position: , mismatch: 1, identity: 0.969

tcgacaatggataagttgacttcaggtctggg	CRISPR spacer
tcgacaatggataagttgacttccggtctggg	Protospacer
*********************** ********

8. spacer 5.2|3833092|32|NZ_CP054353|CRISPRCasFinder matches to NZ_CP051133 (Enterobacter hormaechei strain AMS-38 plasmid pAMS-38a, complete sequence) position: , mismatch: 1, identity: 0.969

tcgacaatggataagttgacttcaggtctggg	CRISPR spacer
tcgacaatggataagttgacttccggtctggg	Protospacer
*********************** ********

9. spacer 2.1|2392611|38|NZ_CP054353|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

10. spacer 4.26|3807247|32|NZ_CP054353|CRISPRCasFinder,CRT matches to MN693679 (Marine virus AFVG_250M1046, complete genome) position: , mismatch: 6, identity: 0.812

--gccaattgccatatatgccatcgccagcagcc	CRISPR spacer
tagacga--ggcatatatgacatcgccagcagcc	Protospacer
  * *.*  * ******** **************

11. spacer 4.26|3807247|32|NZ_CP054353|CRISPRCasFinder,CRT matches to MN694531 (Marine virus AFVG_250M1045, complete genome) position: , mismatch: 6, identity: 0.812

--gccaattgccatatatgccatcgccagcagcc	CRISPR spacer
tagacga--ggcatatatgacatcgccagcagcc	Protospacer
  * *.*  * ******** **************

12. spacer 4.17|3806698|32|NZ_CP054353|CRISPRCasFinder,CRT matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 7, identity: 0.781

atgtggaaaggcgagctgagggtggcctacgc	CRISPR spacer
atgaggaaaggcgagccgagggtggagggggc	Protospacer
*** ************.********   . **

13. spacer 4.4|3806697|33|NZ_CP054353|PILER-CR matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 8, identity: 0.758

gatgtggaaaggcgagctgagggtggcctacgc	CRISPR spacer
catgaggaaaggcgagccgagggtggagggggc	Protospacer
 *** ************.********   . **

14. spacer 4.17|3806698|32|NZ_CP054353|CRISPRCasFinder,CRT matches to NZ_CP022191 (Yangia pacifica strain YSBP01 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

atgtggaaaggcgagctgagggtggcctacgc	CRISPR spacer
gccttgatgggcgagctgatgctggcctacgc	Protospacer
.. * ** .********** * **********

15. spacer 4.22|3807003|32|NZ_CP054353|CRISPRCasFinder,CRT matches to NZ_CP043441 (Cupriavidus campinensis strain MJ1 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

ccacctcagcctgcgcgcccgctgaatattcc---	CRISPR spacer
cctcctccgcctgcgcgcccgct---tgtgcgctg	Protospacer
** **** ***************   *.* *    

16. spacer 4.24|3807125|32|NZ_CP054353|CRISPRCasFinder,CRT matches to NZ_CP029357 (Azospirillum sp. CFH 70021 plasmid unnamed2) position: , mismatch: 8, identity: 0.75

caggcggcgcagtggcgcatgaatccgttcgc	CRISPR spacer
caggcggcgaagtggagcatgaagctcgtgcc	Protospacer
********* ***** ******* *.  *  *

17. spacer 4.19|3806820|32|NZ_CP054353|CRISPRCasFinder,CRT matches to NZ_CP045959 (Salmonella enterica subsp. enterica serovar Birkenhead strain AUSMDU00010532 plasmid pAUSMDU00010532_01, complete sequence) position: , mismatch: 9, identity: 0.719

ttgccggtacagctccagcattaatccccacc	CRISPR spacer
ctgccggtacagctccggcagtaaaattgtcc	Protospacer
.***************.*** ***  ..  **

18. spacer 4.22|3807003|32|NZ_CP054353|CRISPRCasFinder,CRT matches to NC_007960 (Nitrobacter hamburgensis X14 plasmid 2, complete sequence) position: , mismatch: 9, identity: 0.719

ccacctcagcctgcgcgcccgctgaatattcc	CRISPR spacer
gcttctcagcctgcgcgcccacggaatggccg	Protospacer
 * .****************.* ****. .* 

19. spacer 4.26|3807247|32|NZ_CP054353|CRISPRCasFinder,CRT matches to MK308676 (Vibrio phage vB_VmeM-Yong MS31, complete genome) position: , mismatch: 9, identity: 0.719

gccaattgccatatatgccatcgccagcagcc	CRISPR spacer
ctccattgccatatgtgccaacgccagcgttt	Protospacer
 .* **********.***** *******. ..

20. spacer 4.26|3807247|32|NZ_CP054353|CRISPRCasFinder,CRT matches to MK308675 (Vibrio phage vB_VmeM-Yong XC32, complete genome) position: , mismatch: 9, identity: 0.719

gccaattgccatatatgccatcgccagcagcc	CRISPR spacer
ctccattgccatatgtgccaacgccagcgttt	Protospacer
 .* **********.***** *******. ..

21. spacer 4.26|3807247|32|NZ_CP054353|CRISPRCasFinder,CRT matches to MK308674 (Vibrio phage vB_VmeM-Yong XC31, complete genome) position: , mismatch: 9, identity: 0.719

gccaattgccatatatgccatcgccagcagcc	CRISPR spacer
ctccattgccatatgtgccaacgccagcgttt	Protospacer
 .* **********.***** *******. ..

22. spacer 5.2|3833092|32|NZ_CP054353|CRISPRCasFinder matches to AP014351 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S39-C3, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.719

tcgacaatggataagttgacttcaggtctggg	CRISPR spacer
ccaacaatggataagttgacgccaggtaatta	Protospacer
.*.***************** .*****    .

23. spacer 4.13|3807246|33|NZ_CP054353|PILER-CR matches to MK308676 (Vibrio phage vB_VmeM-Yong MS31, complete genome) position: , mismatch: 10, identity: 0.697

agccaattgccatatatgccatcgccagcagcc	CRISPR spacer
cctccattgccatatgtgccaacgccagcgttt	Protospacer
  .* **********.***** *******. ..

24. spacer 4.13|3807246|33|NZ_CP054353|PILER-CR matches to MK308675 (Vibrio phage vB_VmeM-Yong XC32, complete genome) position: , mismatch: 10, identity: 0.697

agccaattgccatatatgccatcgccagcagcc	CRISPR spacer
cctccattgccatatgtgccaacgccagcgttt	Protospacer
  .* **********.***** *******. ..

25. spacer 4.13|3807246|33|NZ_CP054353|PILER-CR matches to MK308674 (Vibrio phage vB_VmeM-Yong XC31, complete genome) position: , mismatch: 10, identity: 0.697

agccaattgccatatatgccatcgccagcagcc	CRISPR spacer
cctccattgccatatgtgccaacgccagcgttt	Protospacer
  .* **********.***** *******. ..

26. spacer 4.22|3807003|32|NZ_CP054353|CRISPRCasFinder,CRT matches to NC_005002 (Salmonella enterica subsp. enterica serovar Enteritidis plasmid pB, complete sequence) position: , mismatch: 11, identity: 0.656

ccacctcagcctgcgcgcccgctgaatattcc	CRISPR spacer
agtccttagcctgcgcgaccgctgaactggtg	Protospacer
   ***.********** ********.   . 

27. spacer 4.22|3807003|32|NZ_CP054353|CRISPRCasFinder,CRT matches to NC_019127 (Salmonella enterica subsp. enterica serovar Enteritidis plasmid pVCM01, complete sequence) position: , mismatch: 11, identity: 0.656

ccacctcagcctgcgcgcccgctgaatattcc	CRISPR spacer
agtccttagcctgcgcgaccgctgaactggtg	Protospacer
   ***.********** ********.   . 

28. spacer 4.22|3807003|32|NZ_CP054353|CRISPRCasFinder,CRT matches to HG796434 (Uncultured bacterium plasmid pRGI01198) position: , mismatch: 11, identity: 0.656

ccacctcagcctgcgcgcccgctgaatattcc	CRISPR spacer
agtccttagcctgcgcgaccgctgaactggtg	Protospacer
   ***.********** ********.   . 

29. spacer 4.22|3807003|32|NZ_CP054353|CRISPRCasFinder,CRT matches to NZ_MF156267 (Escherichia coli strain 838B plasmid pBuzz, complete sequence) position: , mismatch: 11, identity: 0.656

ccacctcagcctgcgcgcccgctgaatattcc	CRISPR spacer
agtccttagcctgcgcgaccgctgaactggtg	Protospacer
   ***.********** ********.   . 

30. spacer 4.23|3807064|32|NZ_CP054353|CRISPRCasFinder,CRT matches to NZ_CP021084 (Deinococcus ficus strain CC-FR2-10 plasmid pDFI3, complete sequence) position: , mismatch: 11, identity: 0.656

ggacgcgttccatcagggcgggtccagggaat	CRISPR spacer
tcacgcgttccatcagggcgaggccttcactc	Protospacer
  ******************.* **   .  .

31. spacer 4.26|3807247|32|NZ_CP054353|CRISPRCasFinder,CRT matches to NZ_CP043499 (Rhizobium grahamii strain BG7 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.656

gccaattgccatatatgccatcgccagcagcc	CRISPR spacer
atgtgccatcatatttgccatcgccggcagcc	Protospacer
..  .....***** **********.******

32. spacer 4.26|3807247|32|NZ_CP054353|CRISPRCasFinder,CRT matches to NZ_CP011513 (Paenibacillus peoriae strain HS311 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.656

gccaattgccatatatgccatcgccagcagcc	CRISPR spacer
tttttacttcatatatgccatcagcagcagcc	Protospacer
 ..   . .*************. ********

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 589708 : 664898 59 Vibrio_phage(17.65%) protease,integrase,tRNA,transposase,holin attL 610007:610022|attR 656628:656643
DBSCAN-SWA_2 1092957 : 1108212 19 Enterobacteria_phage(15.38%) integrase attL 1087382:1087395|attR 1102657:1102670
DBSCAN-SWA_3 1342513 : 1437225 87 Enterobacteria_phage(39.53%) portal,protease,integrase,capsid,head,lysis,tail,terminase,tRNA,transposase attL 1359318:1359377|attR 1381041:1381810
DBSCAN-SWA_4 1737312 : 1843857 107 Enterobacteria_phage(42.65%) portal,head,tRNA,lysis,tail,terminase,capsid,transposase,holin NA
DBSCAN-SWA_5 1894131 : 1902847 8 Enterobacteria_phage(42.86%) NA NA
DBSCAN-SWA_6 1983255 : 2085998 134 Escherichia_phage(26.88%) portal,integrase,plate,head,lysis,tail,terminase,capsid,transposase,holin attL 2014408:2014424|attR 2062804:2062820
DBSCAN-SWA_7 2296113 : 2340649 57 Enterobacteria_phage(73.81%) portal,integrase,capsid,plate,head,tail,terminase,tRNA attL 2303305:2303329|attR 2338223:2338247
DBSCAN-SWA_8 2452070 : 2554392 109 Escherichia_phage(29.09%) portal,head,lysis,tail,terminase,capsid,transposase NA
DBSCAN-SWA_9 2714070 : 2726816 14 Escherichia_phage(66.67%) tRNA NA
DBSCAN-SWA_10 2801192 : 2849465 57 Escherichia_phage(24.14%) protease,integrase,lysis,tail,transposase,holin attL 2823225:2823239|attR 2849842:2849856
DBSCAN-SWA_11 3157532 : 3282708 112 Enterobacteria_phage(40.0%) portal,protease,transposase,integrase,plate,head,tail,capsid,tRNA attL 3152532:3152547|attR 3275743:3275758
DBSCAN-SWA_12 3849507 : 3856647 6 Escherichia_phage(83.33%) NA NA
DBSCAN-SWA_13 3939033 : 4005643 81 Salmonella_phage(71.15%) portal,integrase,transposase,plate,head,lysis,tail,terminase,capsid,tRNA attL 3949430:3949474|attR 3984642:3984686
DBSCAN-SWA_14 4184892 : 4254486 56 Stx2-converting_phage(42.86%) protease,integrase,lysis,tRNA,transposase attL 4199513:4199528|attR 4215951:4215966
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage