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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP046051 Ruminococcaceae bacterium LBM 19010 chromosome, complete genome 6 crisprs cas8b2,cas7,cas5,cas3,cas4,cas1,cas2,WYL,DEDDh,cas8c,csa3 0 10 3 0

Results visualization

1. NZ_CP046051
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046051_1 170443-170539 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046051_2 677655-680589 Unclear NA
44 spacers
cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046051_3 805977-806059 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046051_4 935435-936127 TypeI I-C
10 spacers
cas2,cas1,cas4,cas7,cas8c,cas5

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046051_5 938068-938769 TypeI I-C
10 spacers
cas2,cas1,cas4,cas7,cas8c,cas5,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP046051_6 940715-944792 TypeI I-C
61 spacers
cas2,cas1,cas4,cas7,cas8c,cas5,cas3

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP046051_1 1.1|170474|35|NZ_CP046051|CRISPRCasFinder 170474-170508 35 NC_016624 Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence 58760-58794 8 0.771
NZ_CP046051_6 6.29|942600|34|NZ_CP046051|PILER-CR,CRISPRCasFinder,CRT 942600-942633 34 NC_027387 Escherichia phage CICC 80001, complete genome 30377-30410 8 0.765
NZ_CP046051_6 6.43|943527|33|NZ_CP046051|PILER-CR,CRISPRCasFinder,CRT 943527-943559 33 NZ_CP039694 Agrobacterium larrymoorei strain CFBP5473 plasmid pTiCFBP5473, complete sequence 82225-82257 8 0.758
NZ_CP046051_6 6.43|943527|33|NZ_CP046051|PILER-CR,CRISPRCasFinder,CRT 943527-943559 33 NZ_CP039694 Agrobacterium larrymoorei strain CFBP5473 plasmid pTiCFBP5473, complete sequence 242228-242260 8 0.758
NZ_CP046051_6 6.43|943527|33|NZ_CP046051|PILER-CR,CRISPRCasFinder,CRT 943527-943559 33 NZ_CP039899 Agrobacterium tumefaciens strain CFBP5877 plasmid pAtCFBP5877a, complete sequence 296678-296710 8 0.758
NZ_CP046051_6 6.43|943527|33|NZ_CP046051|PILER-CR,CRISPRCasFinder,CRT 943527-943559 33 NZ_CP039890 Agrobacterium tumefaciens strain CFBP5499 plasmid pAtCFBP5499a, complete sequence 296678-296710 8 0.758
NZ_CP046051_5 5.8|938567|34|NZ_CP046051|PILER-CR,CRISPRCasFinder,CRT 938567-938600 34 NC_008757 Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, complete sequence 267074-267107 9 0.735
NZ_CP046051_6 6.22|942136|35|NZ_CP046051|PILER-CR,CRISPRCasFinder,CRT 942136-942170 35 NZ_CP041127 Serratia marcescens strain WVU-005 plasmid pWVU-005-1, complete sequence 9160-9194 9 0.743
NZ_CP046051_6 6.25|942335|33|NZ_CP046051|PILER-CR,CRISPRCasFinder,CRT 942335-942367 33 NZ_CP041669 Legionella israelensis strain L18-01051 plasmid unnamed, complete sequence 22362-22394 9 0.727
NZ_CP046051_6 6.29|942600|34|NZ_CP046051|PILER-CR,CRISPRCasFinder,CRT 942600-942633 34 NC_047895 Escherichia phage EG1, complete genome 26398-26431 9 0.735
NZ_CP046051_2 2.29|679536|36|NZ_CP046051|PILER-CR,CRISPRCasFinder,CRT 679536-679571 36 NC_048816 Gordonia phage OhMyWard, complete genome 59101-59136 10 0.722
NZ_CP046051_4 4.5|935732|35|NZ_CP046051|CRISPRCasFinder,CRT,PILER-CR 935732-935766 35 CP032137 Acinetobacter haemolyticus strain sz1652 plasmid unnamed2, complete sequence 65162-65196 10 0.714
NZ_CP046051_4 4.5|935732|35|NZ_CP046051|CRISPRCasFinder,CRT,PILER-CR 935732-935766 35 NZ_CP026426 Acinetobacter sp. ACNIH1 plasmid pACI-df08, complete sequence 128582-128616 10 0.714
NZ_CP046051_5 5.7|938501|34|NZ_CP046051|PILER-CR,CRISPRCasFinder,CRT 938501-938534 34 MK069556 Microcystis phage Me-ZS1, complete genome 32600-32633 10 0.706
NZ_CP046051_6 6.29|942600|34|NZ_CP046051|PILER-CR,CRISPRCasFinder,CRT 942600-942633 34 NC_048004 Salmonella phage 3A_8767, complete genome 30271-30304 10 0.706
NZ_CP046051_5 5.8|938567|34|NZ_CP046051|PILER-CR,CRISPRCasFinder,CRT 938567-938600 34 NZ_CP039703 Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence 526490-526523 11 0.676
NZ_CP046051_6 6.31|942732|34|NZ_CP046051|PILER-CR,CRISPRCasFinder,CRT 942732-942765 34 MN694198 Marine virus AFVG_250M320, complete genome 42535-42568 11 0.676
NZ_CP046051_6 6.31|942732|34|NZ_CP046051|PILER-CR,CRISPRCasFinder,CRT 942732-942765 34 MN694596 Marine virus AFVG_250M321, complete genome 42498-42531 11 0.676

1. spacer 1.1|170474|35|NZ_CP046051|CRISPRCasFinder matches to NC_016624 (Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence) position: , mismatch: 8, identity: 0.771

ctccaagggtgtctatctggcggacacccttttgc	CRISPR spacer
cggcaagggggtctatctggcggccaccggcctgc	Protospacer
*  ****** ************* ****  ..***

2. spacer 6.29|942600|34|NZ_CP046051|PILER-CR,CRISPRCasFinder,CRT matches to NC_027387 (Escherichia phage CICC 80001, complete genome) position: , mismatch: 8, identity: 0.765

tgctgga-gggagcaacctccggctggatggaaac	CRISPR spacer
-actgtatttgagcaacctacggctgggtggaaaa	Protospacer
 .*** *   ********* *******.****** 

3. spacer 6.43|943527|33|NZ_CP046051|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039694 (Agrobacterium larrymoorei strain CFBP5473 plasmid pTiCFBP5473, complete sequence) position: , mismatch: 8, identity: 0.758

ttgcgtcgggcccatctgggagttcgcaagccg	CRISPR spacer
tcgggatcggcgcatctgggcgttcgcaagcct	Protospacer
*.* * . *** ******** *********** 

4. spacer 6.43|943527|33|NZ_CP046051|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039694 (Agrobacterium larrymoorei strain CFBP5473 plasmid pTiCFBP5473, complete sequence) position: , mismatch: 8, identity: 0.758

ttgcgtcgggcccatctgggagttcgcaagccg	CRISPR spacer
tcgggatcggcgcatctgggcgttcgcaagcct	Protospacer
*.* * . *** ******** *********** 

5. spacer 6.43|943527|33|NZ_CP046051|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039899 (Agrobacterium tumefaciens strain CFBP5877 plasmid pAtCFBP5877a, complete sequence) position: , mismatch: 8, identity: 0.758

ttgcgtcgggcccatctgggagttcgcaagccg	CRISPR spacer
tcgggatcggcgcatctgggcgttcgcaagcct	Protospacer
*.* * . *** ******** *********** 

6. spacer 6.43|943527|33|NZ_CP046051|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039890 (Agrobacterium tumefaciens strain CFBP5499 plasmid pAtCFBP5499a, complete sequence) position: , mismatch: 8, identity: 0.758

ttgcgtcgggcccatctgggagttcgcaagccg	CRISPR spacer
tcgggatcggcgcatctgggcgttcgcaagcct	Protospacer
*.* * . *** ******** *********** 

7. spacer 5.8|938567|34|NZ_CP046051|PILER-CR,CRISPRCasFinder,CRT matches to NC_008757 (Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, complete sequence) position: , mismatch: 9, identity: 0.735

gcgttctctgttttctgctttacagttcagcact	CRISPR spacer
agcttccaacttttccgctttacggttcagcact	Protospacer
.  ***.   *****.*******.**********

8. spacer 6.22|942136|35|NZ_CP046051|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041127 (Serratia marcescens strain WVU-005 plasmid pWVU-005-1, complete sequence) position: , mismatch: 9, identity: 0.743

gtaaatttaatgtcttgttgtttgcctgcgccatt	CRISPR spacer
ctttaaacgatgtattgttgtttgcctgcgtcatt	Protospacer
 *  *  ..**** ****************.****

9. spacer 6.25|942335|33|NZ_CP046051|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP041669 (Legionella israelensis strain L18-01051 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.727

attttcaagatgattgtaagcaatctgacgctg	CRISPR spacer
gcctcaataatgattgtaagtaatctgatgctg	Protospacer
...*. * .***********.*******.****

10. spacer 6.29|942600|34|NZ_CP046051|PILER-CR,CRISPRCasFinder,CRT matches to NC_047895 (Escherichia phage EG1, complete genome) position: , mismatch: 9, identity: 0.735

----tgctggagggagcaacctccggctggatggaaac	CRISPR spacer
actgtgtt----tgagcaacctacggctgggtggaaaa	Protospacer
    **.*     ********* *******.****** 

11. spacer 2.29|679536|36|NZ_CP046051|PILER-CR,CRISPRCasFinder,CRT matches to NC_048816 (Gordonia phage OhMyWard, complete genome) position: , mismatch: 10, identity: 0.722

attttttttgcaatgctttcctgatgatgtgacttt	CRISPR spacer
gaagcttttgcaatcctttgctgatgatgtggattc	Protospacer
.   .********* **** ***********. **.

12. spacer 4.5|935732|35|NZ_CP046051|CRISPRCasFinder,CRT,PILER-CR matches to CP032137 (Acinetobacter haemolyticus strain sz1652 plasmid unnamed2, complete sequence) position: , mismatch: 10, identity: 0.714

ttatctatttgggagactttaggcgtcgaaacaag	CRISPR spacer
tcttctatttgggtgactttatgcgtcggcagcct	Protospacer
*. ********** ******* ******. *    

13. spacer 4.5|935732|35|NZ_CP046051|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP026426 (Acinetobacter sp. ACNIH1 plasmid pACI-df08, complete sequence) position: , mismatch: 10, identity: 0.714

ttatctatttgggagactttaggcgtcgaaacaag	CRISPR spacer
tcttctatttgggtgactttatgcgtcggcagcct	Protospacer
*. ********** ******* ******. *    

14. spacer 5.7|938501|34|NZ_CP046051|PILER-CR,CRISPRCasFinder,CRT matches to MK069556 (Microcystis phage Me-ZS1, complete genome) position: , mismatch: 10, identity: 0.706

----cgcagcacccgcaagggcattaacagcctgcgcg	CRISPR spacer
attgcgt----cccgcaaggacattaacggcctgcagt	Protospacer
    **.    *********.*******.******.  

15. spacer 6.29|942600|34|NZ_CP046051|PILER-CR,CRISPRCasFinder,CRT matches to NC_048004 (Salmonella phage 3A_8767, complete genome) position: , mismatch: 10, identity: 0.706

----tgctggagggagcaacctccggctggatggaaac	CRISPR spacer
actgtctt----tgagcaacctacggctgggtggaaaa	Protospacer
    * .*     ********* *******.****** 

16. spacer 5.8|938567|34|NZ_CP046051|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039703 (Clostridium butyricum strain 29-1 plasmid p-butyl_plas_29-1, complete sequence) position: , mismatch: 11, identity: 0.676

gcgttctctgttttctgctttacagttcagcact	CRISPR spacer
cacttatctgttctctgctttacagttccagtta	Protospacer
   ** ******.*************** .  . 

17. spacer 6.31|942732|34|NZ_CP046051|PILER-CR,CRISPRCasFinder,CRT matches to MN694198 (Marine virus AFVG_250M320, complete genome) position: , mismatch: 11, identity: 0.676

catgcaaataaaggcattggtaaattccttgtgc	CRISPR spacer
tcgccgaataaaggcattggtaactttcttcctt	Protospacer
.   *.***************** **.*** . .

18. spacer 6.31|942732|34|NZ_CP046051|PILER-CR,CRISPRCasFinder,CRT matches to MN694596 (Marine virus AFVG_250M321, complete genome) position: , mismatch: 11, identity: 0.676

catgcaaataaaggcattggtaaattccttgtgc	CRISPR spacer
tcgccgaataaaggcattggtaactttcttcctt	Protospacer
.   *.***************** **.*** . .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 134390 : 235992 112 Erysipelothrix_phage(38.1%) capsid,transposase,protease,tail,holin,tRNA,portal,terminase,plate,integrase,head attL 170238:170260|attR 182716:182738
DBSCAN-SWA_2 850574 : 860188 7 Staphylococcus_phage(50.0%) tRNA NA
DBSCAN-SWA_3 1386292 : 1481672 97 Erysipelothrix_phage(33.33%) capsid,transposase,protease,tail,holin,tRNA,portal,terminase,integrase,head attL 1414212:1414234|attR 1484047:1484069
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage