CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP053955	Bacillus tropicus strain FDAARGOS_782 chromosome, complete genome	4 crisprs	WYL,csa3,cas3,Cas14u_CAS-V,DEDDh,RT,cas14j,DinG	0	0	6	0
NZ_CP053956	Bacillus tropicus strain FDAARGOS_782 plasmid unnamed1	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP053955_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053955_1

1434708-1434832

Orphan

Consensus_repeat	Method
GGGTGAACAAAGAAAATAGTGAGTTAATCAAACGTTTGTTTAAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP053955_1

>merge|NZ_CP053955|1|1434708-1434832|CRISPRCasFinder
GGGTGAACAAAGAAAATAGTGAGTTAATCAAACGTTTGTTTAAGGTATATGTTCGCTAGGGAGAAATTGTTGCAGCTCAAGGGTGAACAAAGAAAAATAGTGAGTTAATCAAACGTTTGTTTAAG

>NZ_CP053955|1|1|1434708-1434832|CRISPRCasFinder
GGGTGAACAAAGAAAATAGTGAGTTAATCAAACGTTTGTTTAAG	GTATATGTTCGCTAGGGAGAAATTGTTGCAGCTCAAG
GGTGAACAAAGAAAAATAGTGAGTTAATCAAACGTTTGTTTAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053955.1\|WP_001998544.1\|1436555_1436864_+\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|239245
NZ_CP053955.1\|WP_000924140.1\|1432967_1433141_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053955.1\|WP_000722401.1\|1440365_1441172_+\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224381
NZ_CP053955.1\|WP_144404795.1\|1428114_1429311_+\|L-lactate-dehydrogenase	unknown	unknown	gnl\|CDD\|133427
NZ_CP053955.1\|WP_000359556.1\|1438791_1439457_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224922
NZ_CP053955.1\|WP_000424933.1\|1437016_1437361_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053955.1\|WP_033686065.1\|1432242_1432479_+\|DUF4176-domain-containing-protein	unknown	unknown	gnl\|CDD\|379364
NZ_CP053955.1\|WP_000920745.1\|1432549_1432939_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053955.1\|WP_000026896.1\|1435444_1435828_+\|glycine-cleavage-system-protein-GcvH	unknown	unknown	gnl\|CDD\|234918
NZ_CP053955.1\|WP_000640869.1\|1436207_1436552_+\|DNA-primase	unknown	unknown	gnl\|CDD\|224572
NZ_CP053955.1\|WP_000735091.1\|1439480_1440293_+\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224381
NZ_CP053955.1\|WP_000713749.1\|1430403_1431051_-\|phosphatase-PAP2-family-protein	unknown	unknown	gnl\|CDD\|239481
NZ_CP053955.1\|WP_000218967.1\|1435037_1435403_+\|arsenate-reductase-family-protein	unknown	unknown	gnl\|CDD\|239334
NZ_CP053955.1\|WP_002022685.1\|1433907_1434294_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053955.1\|WP_000826899.1\|1431194_1431722_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053955.1\|WP_000475830.1\|1433562_1433805_+\|DUF3937-family-protein	unknown	unknown	gnl\|CDD\|372461
NZ_CP053955.1\|WP_000601758.1\|1437773_1438799_+\|methionine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224058
NZ_CP053955.1\|WP_000898738.1\|1435990_1436140_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053955.1\|WP_000666170.1\|1429333_1430347_+\|PTS-sugar-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|379113
NZ_CP053955.1\|WP_000171318.1\|1432042_1432234_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP053955.1\|WP_001998544.1\|1436555_1436864_+\|thioredoxin-family-protein	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	4.00134e-18
NZ_CP053955.1\|WP_144404795.1\|1428114_1429311_+\|L-lactate-dehydrogenase	gnl\|CDD\|133427	cd05291, HicDH_like, L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	0
NZ_CP053955.1\|WP_033686065.1\|1432242_1432479_+\|DUF4176-domain-containing-protein	gnl\|CDD\|379364	pfam13780, DUF4176, Domain of unknown function (DUF4176).	2.18334e-27
NZ_CP053955.1\|WP_000359556.1\|1438791_1439457_+\|ABC-transporter-permease	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	1.22157e-98
NZ_CP053955.1\|WP_000026896.1\|1435444_1435828_+\|glycine-cleavage-system-protein-GcvH	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	6.96592e-70
NZ_CP053955.1\|WP_000722401.1\|1440365_1441172_+\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	5.72767e-112
NZ_CP053955.1\|WP_000735091.1\|1439480_1440293_+\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	2.76941e-110
NZ_CP053955.1\|WP_000713749.1\|1430403_1431051_-\|phosphatase-PAP2-family-protein	gnl\|CDD\|239481	cd03386, PAP2_Aur1_like, PAP2_like proteins, Aur1_like subfamily. Yeast Aur1p or Ipc1p is necessary for the addition of inositol phosphate to ceramide, an essential step in yeast sphingolipid synthesis, and is the target of several antifungal compounds such as aureobasidin.	3.42135e-16
NZ_CP053955.1\|WP_000218967.1\|1435037_1435403_+\|arsenate-reductase-family-protein	gnl\|CDD\|239334	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.	6.64822e-61
NZ_CP053955.1\|WP_000475830.1\|1433562_1433805_+\|DUF3937-family-protein	gnl\|CDD\|372461	pfam13073, DUF3937, Protein of unknown function (DUF3937). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 80 amino acids in length.	7.08794e-30
NZ_CP053955.1\|WP_000601758.1\|1437773_1438799_+\|methionine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224058	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism].	9.89966e-177
NZ_CP053955.1\|WP_000640869.1\|1436207_1436552_+\|DNA-primase	gnl\|CDD\|224572	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair].	2.03274e-21
NZ_CP053955.1\|WP_000666170.1\|1429333_1430347_+\|PTS-sugar-transporter-subunit-IIC	gnl\|CDD\|379113	pfam13303, PTS_EIIC_2, Phosphotransferase system, EIIC. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The sugar-specific permease of the PTS consists of three domains (IIA, IIB and IIC). The IIC domain catalyzes the transfer of a phosphoryl group from IIB to the sugar substrate.	1.06298e-86

>NZ_CP053955.1|WP_002022685.1|1433907_1434294_+|hypothetical-protein
MGMITLRKFLISYAASLLTFTIIWFLIPYISDPSYSNENGLPNIVGFIVILIIFGSVLDLVACLIGEVLYRKIKQCRKFRFGIPVFIGLALIYIFILSLFTITSAYASSLVAPIIMGSLVFYVVRRKI
>NZ_CP053955.1|WP_000475830.1|1433562_1433805_+|DUF3937-family-protein
MFKNKKLIRFGLTLLVCLFVIDFTISYFQTYLESAAGIKWVISETWRTILLDAPESILVILGAIALYDFTKETSPKDASI
>NZ_CP053955.1|WP_000924140.1|1432967_1433141_+|hypothetical-protein
MLLGFEYLPKRWGKRKVSEKFLQAKFADEGKGILIITYAIDLYVISIPLKVKKYNSL
>NZ_CP053955.1|WP_000920745.1|1432549_1432939_+|hypothetical-protein
MLKTIKSTLLFVLCLVVLSGCFTREGTIVGGKVHGGSNSIDGKYKSFTGFATQDMDVKKGESWTFTFDDKTKQGTIKAYVLDSDDNTILEVNSGNSKNNIKVSKGDTYKVKIITEEHGGEFEISWEKEK
>NZ_CP053955.1|WP_033686065.1|1432242_1432479_+|DUF4176-domain-containing-protein
MKIEKDTLLPIGSVVRFKTWEQPLMIYGRKKEDSKPKKTWDYVACYYPIGNISTEYNIFFTHEYISEVIFTGYINGVA
>NZ_CP053955.1|WP_000171318.1|1432042_1432234_+|hypothetical-protein
MTLEGLKKILTILFVICFFGTIIFTMFDATYNLKEKIIFSLIYLITVPISFFIVYKIGKFFIK
>NZ_CP053955.1|WP_000826899.1|1431194_1431722_+|hypothetical-protein
MKRLSYFLVFILICLASAGCAKDKEGEKLEYNGRALVIGVVGEKPKDTFRNVKFEEMKLEELEKKSKEVDGFLIMKDHFQEASTEQYKNVFSSLKKPVFFIGLQDKSYSIFITKGIEYNSARKDVNAMYTQGFANIGSGEGQQWAIGLSNGGNTEESIHNMYIVVFQTIADYLNR
>NZ_CP053955.1|WP_000713749.1|1430403_1431051_-|phosphatase-PAP2-family-protein
MKKFKLSSFLPLSYILLLVLVSPLYDVLNKSAVHAVDVTTVVDDWIPFVKAFIIPYLLWFPYLYGALIYYCFADRKQYYVTLSSVILGKLACFSIYYFWQTTVPRPTVVGSDVFSELVRYIYSIDQPVNCFPSIHVLTTFVIMLAAFKRREQHAFEYYILTFFGTLIILSTLFTKQHAFVDAISGMTLASILYFGVQLLLAKETVRVPVKQNHKM
>NZ_CP053955.1|WP_000666170.1|1429333_1430347_+|PTS-sugar-transporter-subunit-IIC
MKEYIMSRVFKASAGIAQGIFVSLGIGLLIENIGRIVDIPLLITIGVVAKSLMAPAIGAGIAFMLGANGLVIFSAMVAGAIGAGSISITEAGLIIKTGEPIGALLTATLAVYIGKRLSGKTALDMMLVPFAAILGSGLVGIWLSHNITPVLNAVGAFIKDSSAGSPFIASIVIAVVWGLLLISPASSAALAIALSLDGVAGGAALAGCVAQFIGFSVISAKENNLGGILAQALCTPKVQLPNITKNPMILVPTVVASAIVGPVSALIFQLEAGKEIAGLGLSSLIAPINLISSEGWEVVPAMVITYIVIPVAVSYILYIALKKAGRIHSGDMTVPQS
>NZ_CP053955.1|WP_144404795.1|1428114_1429311_+|L-lactate-dehydrogenase
MRKRKRANYFARFLFVYVNKYIINIFPVVTNMTKMEYDNSQKGQKLCSIFHKVSMVSIVGISIIRGVKNKRNRLYDQLGEIAMKRHTRKIAIIGTGLVGSSCAYSIVNQGICEELLLIDINYERAVGEAMDLSHCINFTNTRTKVYAGSYEDCKDMDIVIITAGPAPKPGQSRLDTLGASAKIMESVVGGVMESGFDGIFLLASNPVDIITYEVWKLSGLPRNRVIGTGTSLDSSRLRTILSEMLHVDPRSIHGYSLGEHGDSQMVAWSHVTVGGKPILQILEEQKERFGEIDLDEIVEKTAKAGWEIYKRKGTTYYGIGNSLAYIANSIFNDDHRVIAVSAILDGEYGEYDICTGVPAIITRDGIREIVELNLTEDEESRFAKSNDILRDYMKTIGY
>NZ_CP053955.1|WP_000218967.1|1435037_1435403_+|arsenate-reductase-family-protein
MTVTFYSYPKCGTCQKAKKWFEANDVAYEMIHIVENPPSKEDLRNLHEKSELPLKKFFNTSGMRYRELGLKDKLKDASEDEMYELLASDGMLIKRPIVTDGTKVTLGFNEEQFESVWKKYQ
>NZ_CP053955.1|WP_000026896.1|1435444_1435828_+|glycine-cleavage-system-protein-GcvH
MSIPNNLRYSEEHEWVKTEGNEVVIGITHFAQGELGDIVFVELPEVGATIEADEPFGSVESVKTVSELYAPVSGKVVAVNEELSDQPELVNESPYEGAWMVKVELSDASQVEKLLTAEKYAEMTNQD
>NZ_CP053955.1|WP_000898738.1|1435990_1436140_-|hypothetical-protein
MLFPVYFCKRKAQAARSDCEGDGASDVKALFALQKEAKPPNNLAAGAGS
>NZ_CP053955.1|WP_000640869.1|1436207_1436552_+|DNA-primase
MIYVEKVIIVEGTSDRRKIESIIREPVEIVCTNGTIGLSKMDELVDQFFDKEVYVLVDADDAGEKLRKQFRKEFPQAEHIYIDRSYREVATAPSSHLANVLWGADIDVYTEYLR
>NZ_CP053955.1|WP_001998544.1|1436555_1436864_+|thioredoxin-family-protein
MIEVIDWTGAEATALIENEEKTVLYVYTPMCGTCQLAKKMLTVVEMTIEDLKIGMLDLNYAPHFAKEYGIESVPCLLVFENGTLMKKIYAFHSVEYLYTELK
>NZ_CP053955.1|WP_000424933.1|1437016_1437361_+|hypothetical-protein
MELYSLLQSFVNYANGQYHLEPLLRQGEKTVNFRFGDESCSLQISRDYIELLKEERGTEQIVCVDEEDVKQLVNGNVRLQTLMNDGRIQYSGTYRTMLLIESMFHICKPMSVGA
>NZ_CP053955.1|WP_000601758.1|1437773_1438799_+|methionine-ABC-transporter-ATP-binding-protein
MILLENVKKIYKAKSGDVTAVDNANLKIDKGEIFGVIGYSGAGKSSLIRLFNQLEKPTSGQITIANRVISAITGSELRKARQEIGMIFQHFNLLWSRTVRENIEFPLEIAGVDKAKRRKRVDELIHLVGLEGRGDAYPSQLSGGQKQRVGIARALANNPQVLLCDEATSALDPETTDQILDLLLDINKRLGLTIVLITHEMHVIRKICNRVAVMEKGKIVETGPVLDVFRNPQQDITKRFVQQLTDSEDTNETIESLIEKYPDGKVIRLQFIGEAVERPVLQRLMQRSDIEVSILQGNIAQTNNGSYGSLVVHLNGEETAIQQAIEGIHQDQVELEVIAHG
>NZ_CP053955.1|WP_000359556.1|1438791_1439457_+|ABC-transporter-permease
MDKLLTNVDWNQMLEATGETLYMTAIAALATFVLGLILGLLLFMTAKDNLWENKAVNTAIGAFVNIFRSIPFIILIILLIPFTKILLGTILGASAALPALIIGAAPFYARMVEIALREIDKGVIEASKAMGAKTSTIILKVLIPESLPALVSGITVTTIALVGYTAMAGVVGAGGLGTLAYLEGFQRGNNDVTIVATICVLLVVFFIQWIGDRVTTRIDKR
>NZ_CP053955.1|WP_000735091.1|1439480_1440293_+|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein
MKKLLLTALISTSIFGLAACGGKDKDEKKLVVGASNVPHAEILEKAKPLLEKKGIELEVKKFQDYVLPNKSLADKDLDANYFQHIPYLEKEIKDKKYDFEVAGKIHLEPIGVYSQKYKSLKELPNGATIIMSNSVADHGRGLAILQKEGILKIKDGVDPVKATPKDIADNPKNLKFKTDIEPGLLPQVYNNKEGDAVLINSNYAIDAKLNPEKDAIAIESNDSPYANVVAVRKGDKDKKEIKALVEVLHSKEIEDFINKEYKGAVVPVKE
>NZ_CP053955.1|WP_000722401.1|1440365_1441172_+|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein
MKKILLSVVTALSVFTLAACGGKEENKLVVGASNVPHAVILEKAQPILEKKGIKLEIKKFQDYVLPNKALADKEIDANYFQHIPYLDKEIQEKGYKIVNAGKIHLEPMGIYSKKYKSLKDLPDGGTVIMSNNVAERGRMLALLQKGGVIKLKDGVDVVKATVKDVVENPKNLKFKTDVEPGLSPKLYENNEGDALFINSNYAIDAKLNPTKDAIAIEGSDSPYANIIAVRKGDEKKKEIKELVEVLHSKEIQDFINKEYKGAVLPVSE

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Crispr_ID: NZ_CP053955_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053955_2

3428752-3428907

Orphan

Consensus_repeat	Method
AGGAATGAATATTCATTCCGGAA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP053955_2

>merge|NZ_CP053955|2|3428752-3428907|CRISPRCasFinder
AGGAATGAATATTCATTCCTAAATAGAATTAAAAAATGAGAGTAGGAGAGGGGATTTGTGCAACTAAAGGAATGAATATTCATTCCGGAAAGACTAGTTTAATAGAGTTTATAAAATAATGTAATAGAATGATAGGAATGAATATTCATTCCGTAA

>NZ_CP053955|2|2|3428752-3428907|CRISPRCasFinder
AGGAATGAATATTCATTCCTAAA	TAGAATTAAAAAATGAGAGTAGGAGAGGGGATTTGTGCAACTAA
AGGAATGAATATTCATTCCGGAA	AGACTAGTTTAATAGAGTTTATAAAATAATGTAATAGAATGAT
AGGAATGAATATTCATTCCGTAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053955.1\|WP_001107307.1\|3428164_3428731_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|292911
NZ_CP053955.1\|WP_001273581.1\|3420438_3421515_+\|bifunctional-3-deoxy-7-phosphoheptulonate-synthase/chorismate-mutase	unknown	unknown	gnl\|CDD\|183614
NZ_CP053955.1\|WP_001100969.1\|3426777_3427935_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|226925
NZ_CP053955.1\|WP_000576693.1\|3442764_3443190_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053955.1\|WP_000346938.1\|3437945_3438620_-\|TerC-family-protein	unknown	unknown	gnl\|CDD\|163429
NZ_CP053955.1\|WP_000757318.1\|3441044_3441314_+\|PTS-sugar-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99905
NZ_CP053955.1\|WP_000599623.1\|3438925_3441031_+\|BglG-family-transcription-antiterminator	unknown	unknown	gnl\|CDD\|226234
NZ_CP053955.1\|WP_000040235.1\|3428942_3432059_+\|MMPL-family-transporter	unknown	unknown	gnl\|CDD\|225272
NZ_CP053955.1\|WP_000633862.1\|3433769_3435395_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|237894
NZ_CP053955.1\|WP_000997699.1\|3415505_3415943_-\|YndM-family-protein	unknown	unknown	gnl\|CDD\|371204
NZ_CP053955.1\|WP_000664612.1\|3425200_3426490_+\|3-phosphoshikimate-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|235037
NZ_CP053955.1\|WP_000808756.1\|3435915_3437889_+\|LTA-synthase-family-protein	unknown	unknown	gnl\|CDD\|224287
NZ_CP053955.1\|WP_001231390.1\|3424083_3425184_+\|prephenate-dehydrogenase	unknown	unknown	gnl\|CDD\|235824
NZ_CP053955.1\|WP_001269402.1\|3421799_3422972_+\|chorismate-synthase	unknown	unknown	gnl\|CDD\|171518
NZ_CP053955.1\|WP_000459665.1\|3441338_3442610_+\|PTS-ascorbate-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|236502
NZ_CP053955.1\|WP_000265195.1\|3416124_3419607_+\|DUF4020-domain-containing-protein	unknown	unknown	gnl\|CDD\|238697
NZ_CP053955.1\|WP_000992228.1\|3432530_3433379_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|180682
NZ_CP053955.1\|WP_000551428.1\|3443229_3444057_-\|polysaccharide-deacetylase	unknown	unknown	gnl\|CDD\|200569
NZ_CP053955.1\|WP_000898749.1\|3414258_3415338_+\|isochorismatase-family-protein	unknown	unknown	gnl\|CDD\|238496
NZ_CP053955.1\|WP_001197246.1\|3422990_3424091_+\|histidinol-phosphate-transaminase	unknown	unknown	gnl\|CDD\|134568

Protein	Function_ID	Function_description	E-value
NZ_CP053955.1\|WP_001107307.1\|3428164_3428731_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|292911	pfam16295, TetR_C_10, Tetracycline repressor, C-terminal all-alpha domain.	3.38872e-64
NZ_CP053955.1\|WP_001273581.1\|3420438_3421515_+\|bifunctional-3-deoxy-7-phosphoheptulonate-synthase/chorismate-mutase	gnl\|CDD\|183614	PRK12595, PRK12595, bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed.	0
NZ_CP053955.1\|WP_001100969.1\|3426777_3427935_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|226925	COG4552, Eis, Predicted acetyltransferase involved in intracellular survival and related acetyltransferases [General function prediction only].	8.68778e-72
NZ_CP053955.1\|WP_000346938.1\|3437945_3438620_-\|TerC-family-protein	gnl\|CDD\|163429	TIGR03717, R_switched_YjbE, integral membrane protein, YjbE family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family commonly are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains protein YjbE from Bacillus subtilis. A transport function is proposed.	2.14578e-74
NZ_CP053955.1\|WP_000757318.1\|3441044_3441314_+\|PTS-sugar-transporter-subunit-IIB	gnl\|CDD\|99905	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	1.87571e-34
NZ_CP053955.1\|WP_000599623.1\|3438925_3441031_+\|BglG-family-transcription-antiterminator	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	3.3154e-57
NZ_CP053955.1\|WP_000040235.1\|3428942_3432059_+\|MMPL-family-transporter	gnl\|CDD\|225272	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only].	7.43768e-77
NZ_CP053955.1\|WP_000633862.1\|3433769_3435395_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|237894	PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional.	0
NZ_CP053955.1\|WP_000997699.1\|3415505_3415943_-\|YndM-family-protein	gnl\|CDD\|371204	pfam10710, DUF2512, Protein of unknown function (DUF2512). Proteins in this family are predicted to be integral membrane proteins, and many of them are annotated as being YndM protein. They are all found in Firmicutes. The true function is not known.	4.23761e-45
NZ_CP053955.1\|WP_000664612.1\|3425200_3426490_+\|3-phosphoshikimate-1-carboxyvinyltransferase	gnl\|CDD\|235037	PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional.	0
NZ_CP053955.1\|WP_000808756.1\|3435915_3437889_+\|LTA-synthase-family-protein	gnl\|CDD\|224287	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane].	0
NZ_CP053955.1\|WP_001231390.1\|3424083_3425184_+\|prephenate-dehydrogenase	gnl\|CDD\|235824	PRK06545, PRK06545, prephenate dehydrogenase; Validated.	6.63055e-160
NZ_CP053955.1\|WP_001269402.1\|3421799_3422972_+\|chorismate-synthase	gnl\|CDD\|171518	PRK12463, PRK12463, chorismate synthase; Reviewed.	0
NZ_CP053955.1\|WP_000459665.1\|3441338_3442610_+\|PTS-ascorbate-transporter-subunit-IIC	gnl\|CDD\|236502	PRK09410, ulaA, PTS system ascorbate-specific transporter subunit IIC; Reviewed.	0
NZ_CP053955.1\|WP_000265195.1\|3416124_3419607_+\|DUF4020-domain-containing-protein	gnl\|CDD\|238697	cd01406, SIR2-like, Sir2-like: Prokaryotic group of uncharacterized Sir2-like proteins which lack certain key catalytic residues and conserved zinc binding cysteines; and are members of the SIR2 superfamily of proteins, silent information regulator 2 (Sir2) enzymes which catalyze NAD+-dependent protein/histone deacetylation.	4.57619e-56
NZ_CP053955.1\|WP_000992228.1\|3432530_3433379_+\|hypothetical-protein	gnl\|CDD\|180682	PRK06761, PRK06761, hypothetical protein; Provisional.	4.00284e-149
NZ_CP053955.1\|WP_000551428.1\|3443229_3444057_-\|polysaccharide-deacetylase	gnl\|CDD\|200569	cd10944, CE4_SmPgdA_like, Catalytic NodB homology domain of Streptococcus mutans polysaccharide deacetylase PgdA, Bacillus subtilis YheN, and similar proteins. This family is represented by a putative polysaccharide deacetylase PgdA from the oral pathogen Streptococcus mutans (SmPgdA) and Bacillus subtilis YheN (BsYheN), which are members of the carbohydrate esterase 4 (CE4) superfamily. SmPgdA is an extracellular metal-dependent polysaccharide deacetylase with a typical CE4 fold, with metal bound to a His-His-Asp triad. It possesses de-N-acetylase activity toward a hexamer of chitooligosaccharide N-acetylglucosamine, but not shorter chitooligosaccharides or a synthetic peptidoglycan tetrasaccharide. SmPgdA plays a role in tuning cell surface properties and in interactions with (salivary) agglutinin, an essential component of the innate immune system, most likely through deacetylation of an as-yet-unidentified polysaccharide. SmPgdA shows significant homology to the catalytic domains of peptidoglycan deacetylases from Streptococcus pneumoniae (SpPgdA) and Listeria monocytogenes (LmPgdA), both of which are involved in the bacterial defense mechanism against human mucosal lysozyme. The Bacillus subtilis genome contains six polysaccharide deacetylase gene homologs: pdaA, pdaB (previously known as ybaN), yheN, yjeA, yxkH and ylxY. The biological function of BsYheN is still unknown. This family also includes many uncharacterized polysaccharide deacetylases mainly found in bacteria.	5.81971e-85
NZ_CP053955.1\|WP_000898749.1\|3414258_3415338_+\|isochorismatase-family-protein	gnl\|CDD\|238496	cd01014, nicotinamidase_related, Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.	5.56707e-66
NZ_CP053955.1\|WP_001197246.1\|3422990_3424091_+\|histidinol-phosphate-transaminase	gnl\|CDD\|134568	PRK01533, PRK01533, histidinol-phosphate aminotransferase; Validated.	0

>NZ_CP053955.1|WP_001107307.1|3428164_3428731_+|TetR/AcrR-family-transcriptional-regulator
MAKNKQEDIFDAAMQLFAERGYDGTTIPMIAEKANVGAGTIYRYFENKEALVNSLFSKSMLQLSEMIKTDFPVEANIREQFSHTYNRLFEFARNNVDAFLFTNSHCDSYFLDEQSKKIFDDFIGFFMNIIEDGIAKGFLRPLPPVALIIIVYQPLEKLTKVIATGQLEYSKELVKELEESSWNAIRII
>NZ_CP053955.1|WP_001100969.1|3426777_3427935_+|GNAT-family-N-acetyltransferase
MNVIRLKEDKFREALRLSEYAFQYKVEEERMQQQLTKMKESHEVYGIMEGEDLAAKLHLIPFHIYIGEENFKMGGVAGVATYPEYRRSGYVKELLQHSLQTMKKDGYTVSMLHPFAVTFYRKYGWELCANLLVCHLTKSDLVMKKQVNGTVKRFNKENHPEEVEKLYETFAERFSGMLVRNEKWWLQAVYEDLTLAIYYDENKTAAGYMLYKIENYKMTVDEFVPLHNEARNGLWNFICQHDSMIKELEMTVSENEQLLYTLQEPRVKTEIKPYFMGRIVDVEQFLKQYELNWNNVQQEVILHITDSFAPWNNVSVRLVNYEITIIEEPMDKGIKLDINALSAILLGYKRPLELNELELISGSEEEIRAFENVVPVHKPFIYDFF
>NZ_CP053955.1|WP_000664612.1|3425200_3426490_+|3-phosphoshikimate-1-carboxyvinyltransferase
MKERTIQPVNNGLNGNITIPGDKSISHRAVMFGAIAEGKTTIKGFLPGADCLSTISCFKEMGVDIVQNGDEVTVVGKGLEGLQEPKAVLDVGNSGTTIRLMSGILANTPFFSCVQGDASIAKRPMKRVTNPLKQMGANIDGREEGTFTPLTIRGGDLKAIEYTSPVASAQVKSAILLAGLRAEGVTAVTEPHISRDHTERMLEAFGVTVTREGKTVKLAGGQKLTATDVQVPGDVSSAAFFLVAGAIIPNSKLVLQNVGMNPTRTGIIDVLEKMGAMFTVEPINEGASEPAANITIETSSLKGIEIGGDIIPRLIDEIPVIALAATQAEGITVIKDAHELKVKETNRIDTVVAELTKLGARIEATDDGMIIYGKSALKGNTVNSYGDHRIGMMLAIAGCLAEGKTTIEDAEAVGVSYPTFFEELQKLAK
>NZ_CP053955.1|WP_001231390.1|3424083_3425184_+|prephenate-dehydrogenase
MRKQVVLIGTGLIGGSLALAIKKEHDVTITGYDIFQEQVERAKELHVVDDIAVDLQHACEEANLIVFASPVEETKKLLHKLASFRLRKDVIVTDVGSTKGTIMNEAEALFSKEISFIGGHPMAGSHKTGVESAKAHLFENAFYILTPMNHVPNEHVEELKDWLKGTGSHFLVLNTEEHDYVTGIVSHFPHLIAAGLVKQVEKHAGDNPLIHQLAAGGFKDITRIASSSPKMWSDIVKQNREHLMVLLKEWISEMEGLYDTVSTGDAGEIQNYFADAKEYRDSLPVRKRGAIPAYHDLYVDVLDKVGALAHITSILAREEISITNLQILEAREGLLGVLRISFQREEDRTKAKLVLGEEKYQTYETI
>NZ_CP053955.1|WP_001197246.1|3422990_3424091_+|histidinol-phosphate-transaminase
MQVKDQLSSLQPYKPGKSPEQMKEVYGDHSFVKLASNENPFGCSPRVLDELQKSWLDHALYPDGGATTLRQTIANKLHVQMEQVLCGSGLDEVIQIISRAVLKAGDNIVTAGATFPQYRHHAIIEGCEVKEVALNNGVYDLDEISSVVDNNTKIVWICNPNNPTGTYVNDRKLTQFIEGISENTLIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLASFRVGYAVGHEELIEKLHVVRLPFNVSSLAQKAATIAFGDDEFIEEIVRVNTEGLRQYESFCKENEIPFYQSQTNFIFLPVENGREIYEACAHAGFIIRPFPNGVRITVGTREQNEGVISVLQQHFENKKRKSRDEANA
>NZ_CP053955.1|WP_001269402.1|3421799_3422972_+|chorismate-synthase
MRYITAGESHGPQLTVILEGVPAGLTLAAEHINKELLRRQKGHGRGRRMQIETDTVEIVSGVRHGMTLGSPITLIVKNDDFKHWTKVMGAEPISEKESKDMKRTITKPRPGHADLNGAIKYGHRDIRNVLERSSARETTVRVAAGAVAKQILKELGVEIAGHVLEIGGVKAKHISNLSIEEIQTITENSPVRCLDKEVEQEMMDAIDNAKSSGDSIGGIVEVIAEGMPIGVGSYVHYDRKLDAKLAGAIMSINAFKGAEIGVGFEAARQPGSKVHDEILWDEEQGYTRKTNNAGGLEGGMTTGMPIVVRGVMKPIPTLYKPLASVDIDTKEAFQASIERSDSCAVPAAGVVAESVVAWELAHALVEQFGKDRMELIQQNITQHNKYAKEF
>NZ_CP053955.1|WP_001273581.1|3420438_3421515_+|bifunctional-3-deoxy-7-phosphoheptulonate-synthase/chorismate-mutase
MANHELDQLRKQVDEINLQLLHLLNKRGEIVQKIGEQKQVQGTKRFDPVREREVLDMIAENNEGPFETSTVQHIFKTIFKASLELQEDDNRKALLVSRKKKQENTIVDVKGELIGNGTQTFIMGPCAVESLEQVRQVGQAMKDQGLKLMRGGAFKPRTSPYDFQGLGVEGLQILRQVADEFDLAIISEILNPNDVEMALDYVDVIQVGARNMQNFDLLRAVGKVNKPVLLKRGLAATIDEFINAAEYIIAQGNDQIILCERGIRTYERATRNTLDISAVPILKKETHLPVVVDVTHSTGRRDLLLPTAKAALAIGADAVMAEVHPDPAVALSDSAQQMDIPEFHKFMEELKGFKNKLS
>NZ_CP053955.1|WP_000265195.1|3416124_3419607_+|DUF4020-domain-containing-protein
MWITSEVEIPDELIDHLEQGKLVLFVGAGVSMKGKSNLPNFDDLVDEIAKTLYVEKREITEPHDYYLGKIAKSKDVHQVARDLVHIEKSKPNPLHYAIPRLFPLDTEVRIVTTNFDRHFTTAIKEMNRELNVYYAPALPTGRAFKGLAYIHGNIEQEKEALILTDGDFGRAYLTEGWARRFLVDLFSNYTVLFVGYSHNDPVMKYLATGLPPSTRRYAFVAQGENTYHWEHLGIRPIVYPNKGNNHQSLVKAVKRWAELMGDNYITKRMRIRDIVTVPPSVEQEQLSYIKQSIKKIETVRYFVEFAHDYEWVEWLEAEGKLQNLFLITSNYNEVDELLAKWLVEQFLFSHQKELFQLIFKNHSKLSPLLWRTICSYLNETKMKMDPLLFARWTLLLVETAEKDSKSIETISYLLQKCSFPEHKEIALLLLTFILDGKLKLKRERKWGNDTGESIELEESSRLPVSIFSYVEQIWNEKMKPHISYYAVPIMMMGIEKLRMLSLRQTALKKRDKENVEKEFQQNDLAFLIQIVKECLAYLCENNEKKANYYITEMIEANSILQNRIAIDAMNKNIFVSADEKIKWLLQEGILLDVTYKQEVFQLIKNHYALSLEKTKEEVIQIVLKDLAEERAFDVCFVLDLLFNCDTNSPSTAKGYELMKQKHPHFHSDRYSVQKKEVAEQSITCNVTADGLLQLKDEEIMKQVRQFSQDGVFEQRHFLEMLSKACKLNTEWSISFAYQLVGMHEISNEVWFVCIREWRNNRGLTNEQTQKVIPLLQKFVRNTAFHWLISSFLYEISNRLEELEENSIRNVKRFAFSVFPQVMKSDTDFKLGKQDFYNESIQHPVGKMTAVLLKLLSYDHLYDRNVYEYLFLFEEQVRISTERTNFMLARLVADITFLYHIEKQWCRKYLLPYLELKKENEITKYAWAGLCYTQINLPLFTEMKQFIKYAVEHLEVLHPHTREAFLKWLSFVFIKCVLYWEQKTDWLYPLLIRENEENKIKFMQFLCYYVKTLSAKEQQKFWAAWLSIFLRERPKMGEITAREYVMLLRIILFMDEIVERGLSIICKSFSDVGGKGNQTELKQLFNEILEKTESIKMYKELYANVFFTLLQTLQEADLLETEIIQIKELLIGYRVEKCVINAIDNEIIRIGIVMENLQEEM
>NZ_CP053955.1|WP_000997699.1|3415505_3415943_-|YndM-family-protein
MNDFTVVLIKFISCIIAFSIGLALFFPATFVQIISFSLFVTIVSYMFVDKIILNRIGNTGAIMSDFLLTYLSVWIFGNILLDNYMQIAWGSILSAIVFTLSEVIVHRFSGSHTRHHNDNIRINRRFAYGTEFAEEQNILDKDKKK
>NZ_CP053955.1|WP_000898749.1|3414258_3415338_+|isochorismatase-family-protein
MLFQKDNVSVRYVIEEDAPIISKWLTDQEVLQYYEGRDNPQSVEMVLDHFIHNPNSHEKRCLIEFDGVPIGYIQMYPVDSEWKTLYGYEASQNVWGMDQFIGEPAYWEKGIGTKLVQSAITYIMENMGAEAIAMDPKVNNERAIKCYEKCGFKKVKILKEHELHEGVLEDCWMMEYKPRGLRDMKKALIVIDVQAGMYTAEMPVHNGEKFLQTLQELIGKCRSNDIPVIYVQHNGPKDHPLEKGTDGWKVHEAIAPLEGDCVVEKTTPDSFHKTNLKEVLQDKGIDHVIISGMQTEYCVDTTTRRARSEGYKVTLVSDAHSTFNTEVLHAEDIVKHHNVVFGAFADVIPLKDLKVTASK
>NZ_CP053955.1|WP_000040235.1|3428942_3432059_+|MMPL-family-transporter
MSKLKNWRSLSFLLWIVITITMIVTMPNMDKLVKEKGHITIPNTEQSSIADKMIKEMDKDGTEKYDIIVVFNSGSKTALTTEQKEGIIKTINALQNEKEQLGIKEVVSHLDNKDLEKQLVSKDNTTILTQISIDKKHGEISKVTNNLHNKVKTKGVTTYLTGSDLIAGDFLTSSQEGVKKTEVISIIFILVILIIVFRSPIVPIVSLLTVGVSYLVSMGIIAHLVDQFNFPFSNFTQVFVVVVLFGVGTDYNILLFTRFKEELSKQENAFLATKETFKSAGKTVLYSGIAVLIGFASLALASFKLYQSTSAVAIGVAVLLLVLTTLNPFFMVLLGKGMFYPVKNFKGHEDSRLWGFFAKNSVARPFVALIIVFVISIPFILKYSNTLNYNDLFEVDNKYESKMGINVIEEHFPPGFSSPSTLVIQSNNKLDEASSLQTLDELTDKILKVKGVSEVYSPTRPTGDRIKELYINKQAGELNTGLGDANGGIKEINDGLTTAKDKMGSKDSNSLANVQKLMDGTNEAKNGVSALGIALNQLSNGINDGAKGAQQIESGLTSVNENISVLSHATSQLHAGYTQLEKGLSSYDQYFGSISQAIDGAKKGYEQIEMLMTNFIQTKPELANDPNILQTIGIAKEAQKQLGGLSNELNQLATQHNAAMGSFKEANQSLLKVDNGLKEMNNGVTKLQKGAADLKNGLNEGASGSKQIANKSSELQTGLTKINDGQGQLLTGLKDLQEQMGQLQSGLTKSTEGLEKVSNGLGDAQKYLGELNESKSSEKFYIPKEVLEGEDFQKALNTYMSHDRKTAKMTIILDVNPYSKEAMPIIQEINNTIDGTLKGSELNHAKTAIGGTTARNVDLKEVTGQDFLRTATIMLIGIAIVLIVITRSLLNTIFIIGSLLLAYFASLGISEQISTHILHVDSLSWNVPFFSFIMIVALGVDYSIFVMMRYNELEGDPATKIVIASRHIGGVVLSAALILGGTFAALIPSGVLTLIQVASVVGVALLLLAIIVMPILLPALIGLTSKMKNYAKKLSERK
>NZ_CP053955.1|WP_000992228.1|3432530_3433379_+|hypothetical-protein
MNAKLIIVEGLPGFGKSTTAKLINEILSQNKIEVELFLEGNLNHPADYDGVSCFNKFEFDRLVSNSGDFKEVLLKRVLKKGSNYLLPYRKIKNEFGDQFSDELCNDISRNDIYELPFDKNVELIADKWNDFAEIALEDNKVYIFECCFIQNPLTIGMIKYGEQKEKIINYVMKVAKIIENLNPMLFYVEQDDLEFSFRKALKERNPEWSTGIVDYYTNQGYGKEHNHSGVEGAIKVLEARRNLELEIFDMLKMKKEKINNTKYEIDSYRSMLKDKLTIQMVK
>NZ_CP053955.1|WP_000633862.1|3433769_3435395_+|ATP-binding-cassette-domain-containing-protein
MITVSNVSLRFADRKLFEDVNIKFTPGNCYGLIGANGAGKSTFLKILSGEIEPSTGDIHITPGERLAVLKQNHFEYEEFPVLETVIMGHTQLYKVMQEKNAIYMKEDFSDEDGMRAAELEGEFAELNGWEAESEAAILLKGLGIGEDLHDKKLSELTGAEKVKVLLAQALFGKPDILLLDEPTNHLDLKAIQWLENFLMNFENTVIVVSHDRHFLNKVCTHMADLDFGKIQLYVGNYDFWYESSQLALKLTQDANKKKEEKVKELQNFIARFSSNASKAKQATSRKKLLDKITLDDIRPSSRRYPFVGFTPEREVGNDLLTVEGLSKTIDGEKVLDNVYFTLNKGDKVAFIGRNDIAMTTLFKILMGEMEPDSGSFKWGVTTSQSYFPRDNSKYFENSDLNLVEWLRQFSPQDESESFLRGFLGRMLFSGEEVKKNVSVLSGGEKVRCMLSKMMLSGANVITLDDPTNHLDLESITALNNGLIAFKGTMLFTSHDHQFVQTIANRIIEVTPNGVIDKEATYDEFLENEELQKQVDAMYKGQ
>NZ_CP053955.1|WP_000808756.1|3435915_3437889_+|LTA-synthase-family-protein
MKQFLLKSKSVLSNHFGFFLFAVILFWLKTYAAYVTEFNLGISNTIQKFLLFFNPLSSAVLFLGLALFAKGKRSYIWLIVINLLLSILLYANVVYYRFFSDFITFPTLTQTNNFGDLGGSIVALLHLYDPLYFLDTIILIVLVATKFANPKPIRVAKHKVSLVFVAGILLFSVNLGLAESDRPELLTRTFDRNYIVKYLGAYNYTIYDGIQSAKASTERALADGDNMTEVRNYLTSTYASPNPEYFGKGKGMNVIYIHLESFQNFLIDYKLNGQEVTPFLNSFTKDANTLYFDNFFHQTGQGKTSDAEFMLENSMFGLPQGSVFTTKSHNTYQSAPAILGQQGYTSAVFHGNYKTFWNRDDIYKSFGFNKFFDASYYDMNEKDVVNYGLKDKPFFNESIPLLETLKQPFYTKFITLSNHFPYPIEKEEATIEPANTGDSSVDTYFQTARYLDESVKGFIDYLKQSGLYDNSIIVMYGDHYGISDNHNAAMSKVMGKEINSFENAQLQRVPLIVRVPGVKGGVQHQYGGEIDVLPTLLHLLGTDTKNYVQFGSDLLSPDHKQVVAFRNGNYVSPTVTALNGKYYDTTTGKPVEFTDEIKQNEQMVQNSLKYSDQVVNGDLLRFYTPEGFTPIDRSKYNYNNRDKNKTKVKTTPEGEAK
>NZ_CP053955.1|WP_000346938.1|3437945_3438620_-|TerC-family-protein
MDFLSAEYLSALLAIIVIDLVLAGDNAIVIGLAARRLPKDQQKKVIIWGTIGAIAIRALATLVVVWLLKIPGLLLIGGVLLIWIAYKLIAEGKDHDIKAEEGFWSAIKTIIIADALMGIDNVLAVAGAAHGNFSLVIIGLLVSIPVVVWGSTLILKWVDRYPIIITIGAAVLAYTAAKMIVDEKWFAAFFESNPFMKWAFIIIIIVGVVFFGKAKQKATDGSIS
>NZ_CP053955.1|WP_000599623.1|3438925_3441031_+|BglG-family-transcription-antiterminator
MILDTRSINILQQIIQAEDYVSINQLIDVIQVSKRTLYYDIKKIDDWLQEEGLHSIEYIRHLGYCLNKETKQMIVKKLNECMNNQYEYSPKERKIWLILYLLIQEKRILLKDLINLLQVSRNTVLADLKKLKVELNKYNLSLHSFRKEGYQIVGNEQSKRNLLILSLSQIISQNGWEYLISQVNYIMSDMGSETDTLARETLYIIKKILANCEEFLGVQYTDEVLENLSVYMYLFHRRILKGKCVEMEEAEKNVLKDSKQFEAAKYIAKQFERAFVVKFPIDEIYYITTHLLGAKVNYQENAYEKNNMDEIHSIVDCMIKDFQHYACVLFQDFNGLFTDLYLHMKPAFYRVKYGIEIENPLRNTIQENYEEVYFLTKKVIHHFEEYVRKSVSDDEIAYVTMHFGAWMRKEGIVPNPRKTALLVCPNVIGTSRMLQYQLEKLFSNIDILNAISKREYESNTFDVDCIITTTEIEKGNVPVFKVNPILSDSEKAALLRKVNGVLYGENQKDSVDLVMGIIQKYADVVDEESLKRELIEFMSGPAYFEKEEKYKPMLNELLTREFIQLEDRVDNWKDAIRLAADPLLQNQYIFKEYINEMIVNVEKLGPYIVIAPKIAIPHARPEAGVKKLGMSLLQLKESVRFSEKQEHAANLIIVLAAIDNETHLKALAQLSEMLSDPKNVEMLIHSNSIDEMLKMIAKYSN
>NZ_CP053955.1|WP_000757318.1|3441044_3441314_+|PTS-sugar-transporter-subunit-IIB
MKKVLVVCGNGLGSSFIVEMNVKKILSELGLQAEVSHTDLASSKSEQADLYLGSKDIICNLEDGNRTVAGLTNILDLNEIREALQKHLM
>NZ_CP053955.1|WP_000459665.1|3441338_3442610_+|PTS-ascorbate-transporter-subunit-IIC
MFDIIMKDILGQPAILVGLFAMCGLLLQKKNFADTVSGTLKTIMGFVVLGGGATILIGALDVFGKIFDKAFHIKGIIPNNEAVVAIAQQTLGKETALIMVFGMIVNLLIARFTKFKYVFLTGHHTLFMACLISAVFSTTGMKGATLVTVGSIILGSLMVIFPALLQPYVRKITGMDDIAIGHFGSVGYLAAGFVGSKFGNKDKSTEQIKVPKSLGFLRDTSVSMSLTMAVLFFIVAPFAGKEFIETELSNGQNYLVYSFMQAITFAAGVYIILAGVRMLIAEIVPAFKGIADKLVPNAKPALDCPTIFPFAPNAVIIGFLTSFIAGLLSMFILPFIGLSVIVPGLIPHFFTGATAAVFGNATGGRRGAILGAFVNGLLISFLPAILLPILGGLGFENTTFGDSDFAVVGILISEIVKLVGYIF
>NZ_CP053955.1|WP_000576693.1|3442764_3443190_+|hypothetical-protein
MIFLNEIVSLHLEAVKYEFNNAFDTFDRNWLIIKVKLSEGNKVFETMDPFLQTSELQHMKEWFQTLPNPTYTRLDFIEPNLSFEFIGEKGEIFQIIVRLSIELNPSWCKEEEYEFCITITQEDRKNIIRLIEEQQIKFPKR
>NZ_CP053955.1|WP_000551428.1|3443229_3444057_-|polysaccharide-deacetylase
MHNGIRMTTLVKRAMLICAGVLFTYEAALGSAHTALASTEDEAKSVQFVSEIQSSLAPKEAPKQYNGQVRKVAYLTFDDGPGKYTAELLDMLKKENAKATFFLIGSNVKAFPDLVKREDTEGHYVGMHSMTHNYKKLYTEGHYVDEMKEDQGLIAGVLGKSPVLTRPSYGSMPGLNEALRNKVVENGLKVWDWTIDSLDWRYNKMPVDAASAKIVENVINGANKPTEVILMHDIHPQSVKAVPGIIKGLKEKGYELEAYSENEHFPLNFWHDNRM

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Crispr_ID: NZ_CP053955_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053955_3

5058865-5059120

Orphan

Consensus_repeat	Method
TTCTCATGCGGAAGGTAAACATACA	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP053955_3

>merge|NZ_CP053955|3|5058865-5059120|CRISPRCasFinder
CTCTAATGCAGAGGGTACAGCTTCACATGCAGAAGGGCTTCTGACACATGCAAAAGGGTCTTTCTCTCATGCAGAAGGATCAAAAACGAAAGCAACTGGACATAGTTCCCATAGTGAAGGAAGTGAAACGACAGCAGGTGGCTCTTATTCTCATGCGGAAGGTAAACATACAATCGCTTTAGGCGAAGCAGCACATGCAGAAGGAACCGCTACTATCGCTAACGGATTCTCTTCTCATGCGGAAGGTAATCATACA

>NZ_CP053955|3|3|5058865-5059120|CRISPRCasFinder
CTCTAATGCAGAGGGTACAGCTTCA	CATGCAGAAGGGCTTCTGACACATGCAAAAGGGTCTTT
CTCTCATGCAGAAGGATCAAAAACG	AAAGCAACTGGACATAGTTCCCATAGTGAAGGAAGTGAAACGACAGCAGGTGGCTCTTA
TTCTCATGCGGAAGGTAAACATACA	ATCGCTTTAGGCGAAGCAGCACATGCAGAAGGAACCGCTACTATCGCTAACGGATTCTC
TTCTCATGCGGAAGGTAATCATACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053955.1\|WP_001067694.1\|5050331_5051021_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|369778
NZ_CP053955.1\|WP_000612259.1\|5067175_5068420_-\|competence-protein	unknown	unknown	gnl\|CDD\|226875
NZ_CP053955.1\|WP_000654998.1\|5048955_5049636_-\|streptomycin-biosynthesis-protein-StrF	unknown	unknown	gnl\|CDD\|379345
NZ_CP053955.1\|WP_000872676.1\|5057497_5058238_+\|bis(5'-nucleosyl)-tetraphosphatase-PrpE	unknown	unknown	gnl\|CDD\|184187
NZ_CP053955.1\|WP_000003386.1\|5065298_5067125_-\|oligoendopeptidase-F	unknown	unknown	gnl\|CDD\|341071
NZ_CP053955.1\|WP_000673184.1\|5060725_5061523_-\|NAD-kinase	unknown	unknown	gnl\|CDD\|235317
NZ_CP053955.1\|WP_001180001.1\|5062210_5062582_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053955.1\|WP_000069690.1\|5052424_5053303_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375999
NZ_CP053955.1\|WP_000360642.1\|5063881_5064775_+\|DsbA-family-protein	unknown	unknown	gnl\|CDD\|372699
NZ_CP053955.1\|WP_000654708.1\|5056262_5057423_+\|rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033
NZ_CP053955.1\|WP_001059623.1\|5055180_5056116_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|366154
NZ_CP053955.1\|WP_000043380.1\|5063483_5063882_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|381281
NZ_CP053955.1\|WP_001272382.1\|5049648_5050335_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379345
NZ_CP053955.1\|WP_001081482.1\|5061541_5062180_-\|GTP-pyrophosphokinase-family-protein	unknown	unknown	gnl\|CDD\|225232
NZ_CP053955.1\|WP_000428850.1\|5053425_5054271_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|377550
NZ_CP053955.1\|WP_000932901.1\|5051161_5052259_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|133005
NZ_CP053955.1\|WP_000754593.1\|5065004_5065178_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053955.1\|WP_001004749.1\|5054415_5055174_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_CP053955.1\|WP_033685932.1\|5059816_5060710_-\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
NZ_CP053955.1\|WP_000191127.1\|5062726_5063305_+\|CYTH-domain-containing-protein	unknown	unknown	gnl\|CDD\|143627

Protein	Function_ID	Function_description	E-value
NZ_CP053955.1\|WP_001067694.1\|5050331_5051021_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|369778	pfam08242, Methyltransf_12, Methyltransferase domain. Members of this family are SAM dependent methyltransferases.	3.32034e-18
NZ_CP053955.1\|WP_000654998.1\|5048955_5049636_-\|streptomycin-biosynthesis-protein-StrF	gnl\|CDD\|379345	pfam13712, Glyco_tranf_2_5, Glycosyltransferase like family. Members of this family of prokaryotic proteins include putative glucosyltransferases, which are involved in bacterial capsule biosynthesis.	8.32818e-107
NZ_CP053955.1\|WP_000872676.1\|5057497_5058238_+\|bis(5'-nucleosyl)-tetraphosphatase-PrpE	gnl\|CDD\|184187	PRK13625, PRK13625, bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional.	0
NZ_CP053955.1\|WP_000003386.1\|5065298_5067125_-\|oligoendopeptidase-F	gnl\|CDD\|341071	cd09608, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF). Peptidase family M3B oligopeptidase F (PepF; Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and includes oligoendopeptidase F from Lactococcus lactis. This enzyme hydrolyzes peptides containing between 7 and 17 amino acids with fairly broad specificity. The PepF gene is duplicated in L. lactis on the plasmid that bears it, while a shortened second copy is found in Bacillus subtilis. Most bacterial PepFs are cytoplasmic endopeptidases; however, the Bacillus amyloliquefaciens PepF oligopeptidase is a secreted protein and may facilitate the process of sporulation. Specifically, the yjbG gene encoding the homolog of the PepF1 and PepF2 oligoendopeptidases of Lactococcus lactis has been identified in Bacillus subtilis as an inhibitor of sporulation initiation when over-expressed from a multicopy plasmid. This PepF family includes Streptococcus agalactiae PepB, a group B streptococcal oligopeptidase which has been shown to degrade a variety of bioactive peptides as well as the synthetic collagen-like substrate N-(3-[2-furyl]acryloyl)-Leu-Gly- Pro-Ala in vitro.	0
NZ_CP053955.1\|WP_000673184.1\|5060725_5061523_-\|NAD-kinase	gnl\|CDD\|235317	PRK04885, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional.	0
NZ_CP053955.1\|WP_000360642.1\|5063881_5064775_+\|DsbA-family-protein	gnl\|CDD\|372699	pfam13743, Thioredoxin_5, Thioredoxin.	7.3476e-93
NZ_CP053955.1\|WP_000069690.1\|5052424_5053303_+\|hypothetical-protein	gnl\|CDD\|375999	pfam18573, BclA_C, BclA C-terminal domain. This is the C-terminal domain of BclA (Bacillus collagen-like protein of anthracis) which is expressed on spores of Bacillus species. Trimers of the C-terminal domain (CTD) form the tips of the spore's hair-like nap and are the immunodominant target of vertebrate antibodies and drive trimerization. Structure analysis indicate the C-terminal region of the peptide folding into an all-beta structure with a jelly-fold topology, similar to the first human complement C1q, a member of the tumor necrosis factor (TNF)-like family. The C-terminal globular domain has been shown to be located on the exterior of the exosporium, and therefore is critical in determining the immunogenicity of the spore in a mammalian host.	1.97699e-17
NZ_CP053955.1\|WP_000654708.1\|5056262_5057423_+\|rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	1.38078e-99
NZ_CP053955.1\|WP_001059623.1\|5055180_5056116_+\|glycosyltransferase	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	1.11276e-21
NZ_CP053955.1\|WP_000043380.1\|5063483_5063882_+\|hypothetical-protein	gnl\|CDD\|381281	cd14772, TrHb2_Bs-trHb-like_O, Truncated hemoglobins, group 2 (O); Bacillus subtilis TrHb like. The M- and S families exhibit the canonical secondary structure of hemoglobins, a 3-over-3 alpha-helical sandwich structure (3/3 Mb-fold), built by eight alpha-helical segments. Truncated hemoglobins (TrHbs, 2/2Hb, or 2/2 globins) or the T family globins adopt a 2-on-2 alpha-helical sandwich structure, resulting from extensive and complex modifications of the canonical 3-on-3 alpha-helical sandwich that are distributed throughout the whole protein molecule. TrHbs are classified into three main groups based on their structural properties and named after Mycobacterium sp. genes glbN, glbO, and glbP: TrHb1s (N), TrHb2s (O) and TrHb3s (P). TrHb2's belonging to this group include monomeric Bacillus subtilis trHb (Bs-trHb), which exhibits an extremely high oxygen affinity, and a dimeric TrHb2 from the thermophilic aerobic spore forming bacterium Geobacillus stearothermophilus(Gs-trHb).	1.69795e-69
NZ_CP053955.1\|WP_001272382.1\|5049648_5050335_-\|hypothetical-protein	gnl\|CDD\|379345	pfam13712, Glyco_tranf_2_5, Glycosyltransferase like family. Members of this family of prokaryotic proteins include putative glucosyltransferases, which are involved in bacterial capsule biosynthesis.	1.97374e-109
NZ_CP053955.1\|WP_001081482.1\|5061541_5062180_-\|GTP-pyrophosphokinase-family-protein	gnl\|CDD\|225232	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only].	1.66713e-95
NZ_CP053955.1\|WP_000428850.1\|5053425_5054271_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|377550	pfam05711, TylF, Macrocin-O-methyltransferase (TylF). This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the swine industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex. The structure of one representative sequence from this family, NovP, shows it to be an S-adenosyl-l-methionine-dependent O-methyltransferase that catalyzes the penultimate step in the biosynthesis of the aminocoumarin antibiotic novobiocin. Specifically, it methylates at 4-OH of the noviose moiety, and the resultant methoxy group is important for the potency of the mature antibiotic. It is likely that the key structural features of NovP are common to the rest of the family and include: a helical 'lid' region that gates access to the co-substrate binding pocket and an active centre that contains a 3-Asp putative metal binding site. A further conserved Asp probably acts as the general base that initiates the reaction by de-protonating the 4-OH group of the noviose unit.	1.27737e-148
NZ_CP053955.1\|WP_000932901.1\|5051161_5052259_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|133005	cd02511, Beta4Glucosyltransferase, UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.	6.65047e-53
NZ_CP053955.1\|WP_000612259.1\|5067175_5068420_-\|competence-protein	gnl\|CDD\|226875	COG4469, CoiA, Competence protein CoiA-like family, contains a predicted nuclease domain [General function prediction only].	2.08135e-57
NZ_CP053955.1\|WP_001004749.1\|5054415_5055174_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.11413e-18
NZ_CP053955.1\|WP_033685932.1\|5059816_5060710_-\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	5.21574e-99
NZ_CP053955.1\|WP_000191127.1\|5062726_5063305_+\|CYTH-domain-containing-protein	gnl\|CDD\|143627	cd07762, CYTH-like_Pase_1, Uncharacterized subgroup 1 of the CYTH-like superfamily. Enzymes belonging to the CYTH-like (also known as triphosphate tunnel metalloenzyme (TTM)-like) superfamily hydrolyze triphosphate-containing substrates, require metal cations as cofactors, and have a unique active site located at the center of an eight-stranded antiparallel beta barrel tunnel (the triphosphate tunnel). The name CYTH originated from the gene designation for bacterial class IV adenylyl cyclases (CyaB) and from thiamine triphosphatase. Class IV adenylate cyclases catalyze the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. Thiamine triphosphatase is a soluble cytosolic enzyme which converts thiamine triphosphate to thiamine diphosphate. This domain superfamily also contains RNA triphosphatases, membrane-associated polyphosphate polymerases, tripolyphosphatases, nucleoside triphosphatases, nucleoside tetraphosphatases and other proteins with unknown functions. Proteins of this subgroup are of bacterial origin and have not been characterized.	4.38888e-85

>NZ_CP053955.1|WP_000872676.1|5057497_5058238_+|bis(5'-nucleosyl)-tetraphosphatase-PrpE
MKYDIIGDIHGCFHEFQDLTKKLGYNWNSDLPIHPDRRKLAFVGDITDRGPHSLRMIEIVWELVINKKVAYYAPGNHCNKLYRFFLGRNVTIAHGLETTVAEYETLPSHKQNMIKEKFITLYEHSPLYHVLDEKRLIVCHAGIRQDYIGRQDKKVQTFVLYGDITGEKHADGSPVRRDWAKEYKGTAWIVYGHTPVKEPRFVNHTVNIDTGAVFGGKLTGLRYPEMETVSVPSSLPFVPEKFRPIS
>NZ_CP053955.1|WP_000654708.1|5056262_5057423_+|rod-shape-determining-protein-RodA
MKDPNSQYQIDYVLLFILFAIGIVSCFAIASAQASLPPFLQNVNFVLKQIQWYFIGFIAIGMIMIIDFDRYQKIAWYLYSFALVLLIGLEFQVPGAITIKGATAWYRLPGIGNFQPSEIMKLFLIIVTGRIIANHNEKYFYRTIHDDFLLLGKICATSLPPLLLIAKEPDLGNTMVISAMLAAMILVSGIRWRFIFGLVSGIFAVGVTLTYIFFTHTKFFKAHILQEYQLNRFYGWLAPYKYDAQGYQLRQAFLATGSGEMQGKGWENGQVYFPEPHTDFIFTNVAEQFGFLGASVIIALFFLLIFRMIHIALESNDPFGSYICAGTIGMFTFQVFQNIGMTIGLLPITGITLPLMSYGGSSLLTYMIAIGFVLNVRSRTKIFMFN
>NZ_CP053955.1|WP_001059623.1|5055180_5056116_+|glycosyltransferase
MNNIKNPPLVSILIPTYNRPHYFKIALESALAQTYPNIEIIVGDDSTNDEIEILMQTHYLPNYKHITYIRNATTLGQFNNSLMLLKQSHGEYINFLMDDDIFYNSKIEKMMFYFQKDLDQNLALITSYRTWINDDGEIIEQHPSMKRLYDEDTLLNGTDFGNHMLILGQNIIGEPTTVLFRKRLLTEPFGTLNGRNYNCSVDMASWISLLSKGDAIYITEPLSSFRLHTGQQVHHKYLEGCEDFSHLVLNSKKYGFLQEIDYYKTSLLKACEWHKNATTFYQLYPELIPTTDTHIRLSHCLNIVTKELRAI
>NZ_CP053955.1|WP_001004749.1|5054415_5055174_+|class-I-SAM-dependent-methyltransferase
MNENEKKTTLIPPPELVQYVGGDFEEVGKEFMQYFIEIGNLKSNETVLDVGCGIGRMAVPLMNYLSDDGTYYGFDLFNKGITWCKNNISTRRNNFHFEHVDIYNQFYNPDGKEDASQYKFPYEDESFDFIFLTSVFTHLLPKELEHYVCEIARVLKKDGRCFITFFLINPESSYYLNAGLSTLGFYHQIDNCYVLNKEIPNFAVAYPEEDIRTLLNKYGLEIQTPPHYGSWCGRTEHTSYQDIILTQKISER
>NZ_CP053955.1|WP_000428850.1|5053425_5054271_+|class-I-SAM-dependent-methyltransferase
MENKSAVQLYLELLKKTILFEIWLEYEPYLPASLHISKELSYEPVTVPLPLFLKQYIENHNLKIVNPNVSNNERQGGKDWPRAAHSMVGRKRMNQLQEAMETVVRENIEGDFIETGVWRGGSCIFMNGFLQANNIKDRTVWVADSFEGLPAPNLEQYPKDYGDYLHTFDYLRVSLETVQENFRKYDLLNDQVKFLKGWFKDTLPSAPVEKIAIARLDGDMYESTMDSLVNLYDKVSTGGFIIIDDYGLITCAEAVTDFRSERNIKTPMTQIDDFGIYWRKE
>NZ_CP053955.1|WP_000069690.1|5052424_5053303_+|hypothetical-protein
MSNNNYSDGLNPDESLSASAFDPNLVGPTLPPIPPFTLPTGPTGPTGPTGPTGPTVPTGPTGPTGPTGPTGPTGPTGPTGPTGDTGTTGTTGPTGPTGDTGTTGPTGPTGDTGATGPTGPTGDTGTTGPTGPTGDTGATGPTGATGPTGPTGPTGPSGLGLPAGLYAFNSGGISLDLGINDPLPFNTVGSQFGTAISQLDADTFVISETGFYKITVIANTATVSALGGLTIQVNGVPVPGTGSSLISLGAPIVIQAITQITTTPSLVEVIVTGLGLSLALGTSASIIIEKIA
>NZ_CP053955.1|WP_000932901.1|5051161_5052259_-|glycosyltransferase-family-2-protein
MLNKQGITISLCMIVRDEEDTIGRCLDAVEKIVDEIIIVDTGSIDRTKEIVAQYTSNIYDFPWINDFAAARNFSFSKATQEYILWLDADDVLLEDAQEALKLLKRELDPKIDAVSMPYHLALDSSGKPLYCTKRNRLVKREKQFQWFGKVHEYLAISGETFSSNVAITHKKEKKVTNRNLKIFQNAVAAGEELSPRDLFYYANESMDNQKYDDAVMLYETFLNQDEGWYEEKIYACGKLGDCYAKLGSWEKAIESCVKSFRYDVPRGENCTRIGYIYMEQQKYNEAIFWFKLATEVPMATESPFHSPASYTWLPYLQMCICYSKLGEQDKAYYYNELAAAYVPNNAAIEYNRKYFRSVFDKQYKV
>NZ_CP053955.1|WP_001067694.1|5050331_5051021_-|class-I-SAM-dependent-methyltransferase
MNPEKSSLYEEKSEHYYNAANPNLLKHIKKEWKEVLDIGCSGGALGAAIKENGTRVSGIEAFPEAAEKAKERLDHVILGDIEKIDLPYEEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKENGVILASIPNVAHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSISKVDRVYIDHKVYEPLIEELYGICKKYRLGSGFMAETVVFQYIIEAEKSQL
>NZ_CP053955.1|WP_001272382.1|5049648_5050335_-|hypothetical-protein
MSAGEKTILFVTCINDRKMYAQCVRHILRLAVPPGYIVQFMPIRNAKSMTSGYNQAISHPAKYKVYIHQDVFIMNVAFLYGLLQLFNEHEHLGMIGMIGAQYVPPNGVWNEGKGVVGKVIGYMNDLFYMATQEQPYHESKTFMPVECIDGLLMATQYDIPWREDLFDGFDYYDVSQSFEFRKAGYTVGVPVQRDAWCIHYHIDVNMTNYDKYRKIFVENYMSDVNQDE
>NZ_CP053955.1|WP_000654998.1|5048955_5049636_-|streptomycin-biosynthesis-protein-StrF
MKDRTILVVVCVNNEELFEQCERQIRNLFVPPDYVVQILPIRDAKSMASAYNRALSYPAKYKVYIHQDTYLINREMFYTLISLFKDNEKLGLIGVAGAQFLPSNGIWWEGKNLVGKVIEYRRRNYQLLNLDQGFYGSQSFMSVQAIDGLFMATQYDIPWREDLFQGFHFYDVSQSLEFQRAGYLIGIPNQSNLWCIHYNGDEFDADTYEKDRKVFVEQYKDILSPS
>NZ_CP053955.1|WP_033685932.1|5059816_5060710_-|RluA-family-pseudouridine-synthase
MNRFTLKWDIDSAEEGTLVREFLKTKGISKAALTDIKFHGGAIEVNGQYASVRHQLQAGEELRVFFPVEERSEGMIAEDIPLCIVYEDDAVLVINKEANMSTIPSREHPAGSVANALLSHYDKQHLASTVHIVTRLDRDTSGLMLIAKNRFVHHLLSKQHQQKAVKRTYEAIVHGEMVEREGTIDAPIGRKSDSIIERTVCEEGQRAVTHFRVIDSANHKTHVSLELDTGRTHQIRVHMAHIGHPLLGDNLYGGKRDEMKRQALHSTSLTFYHPILEKEMSFTTTIPNDMQAVVRHT
>NZ_CP053955.1|WP_000673184.1|5060725_5061523_-|NAD-kinase
MKFTIMSKGDQSSDALASTMKEYLLDFGFIMDEKEPDIVISVGGDGTLLYAFHRYYNRLDETAFVGVHTGHLGFYADWLPTEVEKLVIAIAKTPFQVVEYPLLEVIIRYVNGSKESQYLAMNEATVKSAEGTLVTEVEIRGEYFETFRGDGLCISTPSGSTAYNKALGGAIIHPSIEAIQIAEMASINNRVFRTVGSPLVLPKHHTCVLKPTAGMNLQITVDHLTMVHQDVKSIQYRVANEKVRFVRFRPFPFWKRVRDSFVADK
>NZ_CP053955.1|WP_001081482.1|5061541_5062180_-|GTP-pyrophosphokinase-family-protein
MNRNWEEFLAPYHQAVAELKVKLKGMRTQFAMLTEHSPIEFVTGRVKSVASIIDKAEKRNVPLDRLREDMQDIAGLRMMCQFVDEIKPVVEYLRKRNDFEIVEERDYVTQKKDSGYRSYHVVISYPVQTIQGEQKVLVEIQIRTLAMNFWATIEHSLNYKYSGRFPEDIKIRLQRAAEAAFLLDEEMSSIRLEIQEAQKAFSRKQETKDSES
>NZ_CP053955.1|WP_001180001.1|5062210_5062582_-|hypothetical-protein
MQNKIQVKSVEKRENALIFCAENSEIEVKELSARNHVLVDSDNLSFLYILENESSFIYVSIPHTCWEAMHEAMNNDMVMFVRVNDIEMELEGLKEEVEYLVENIEGNANYGEELVTAVEKVFL
>NZ_CP053955.1|WP_000191127.1|5062726_5063305_+|CYTH-domain-containing-protein
MTQEIEIEFKNMVTEEEFNTLCKSFSIEVFTKQVNHYFETPNFSLKEAGSALRIRHKGETYTLTLKQPAEVGLLETHQVVTESEARMMMETNVIISGAVMDQLRKLQIPVSALTYMGSLTTERAETLFEGGTLVFDHSFYYNHDDYEIEFEVQDEETGKAAFIHLLTQHNIPIRHTNNKVKRFFLAKQNKAR
>NZ_CP053955.1|WP_000043380.1|5063483_5063882_+|hypothetical-protein
MSKQPMTPFEAIGGEQCIAILVDTFYSYVSKHPDLSPIFPDDLTETARKQKQFLTQYLGGPNLYTEEHGHPMLRARHLPFEITPKRAEAWLSCMEQAMDDTGVHGHIREFVFERLALTAQHMVNTPDETGEI
>NZ_CP053955.1|WP_000360642.1|5063881_5064775_+|DsbA-family-protein
MDKQEAKHINMPSPSACEHKSVEAYLFIDPLCKDCWEIEPFIIKLWLEYGKYFSIRHIVTGKVDGTNASSHKWNKPANIRFVWEKTTSLQGFSCDGKVHMQEASSTPYLVSMAIKAAELQGRKAGSKFLRKLQEYIFLENVSNPDCELLLACAKDSDIDVEEFKKDLYSASAKKAFQCDLKFTNEMHITEIPSLVFFHANSDEEGIKIAGTYSYDVYVQLLKELVKCEIEPEPLPPLEVLLEATQFISSKEVAFIYDCSKQEIERELKKLQLKRKVQMIDVKCERYWKWIAKEKDLV
>NZ_CP053955.1|WP_000754593.1|5065004_5065178_+|hypothetical-protein
MKKTYILLIILAVIVSFFLYILSLLQAFPKMIAFPLLFGVIVIALSYFNHKKRFKGF
>NZ_CP053955.1|WP_000003386.1|5065298_5067125_-|oligoendopeptidase-F
MSEQNTAKALPDRNEIEESSTWRLEDIFQTDAEWEKEFQAIKELLPKLTEFKGKLGDSANNLLEALQYEDEISMRLGKLYTYAHMRYDQDTTNSVYQALNDRATNLYSQVSSSTAYIVPEILSISEDTLQTFLKENRDLSVYEHALEEITRQRPHVLSEAEEALLAEASEVMSSSSNTFGMLNNADLKFPSIKGEDGEEVEITHGRYIQFLESDDRRVREDAFKAVYETYGKYKNTFASTLSGAVKRNNFNARVRKYDSARQAALSNNNIPEAVYDQLVESVNDNLHLLHRYIDIRKRALGLDELHMYDLYTPLVPEVKMNVKYEEAQDMLLKSLHVLGDEYVDILKEAYENRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLFTLAHEFGHSVHSYYTRKTQPHVYGDYSIFVAEVASTCNEALLNDYLLKTTEDKKERLYLLNHYLEGFRGTVFRQTMFAEFEHMIHKKVQEGYAVTPDMLTEIYYNLNKKYFGDALVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGQPAVERYINEFLKAGSSDYPIEVLKKAGVDMASPEPVKEALQVFEEKLNELEALLFEEK
>NZ_CP053955.1|WP_000612259.1|5067175_5068420_-|competence-protein
MIPIFIAKRANGEKIHLLDHHDEELLHHMRKRESFFCIACGKEVLMRLGKQKRWHFAHKKVDSCLAFYEAESTYHMYGKELLYRWLKRQNFHVEIEHYLPEIQQRPDIFIERAGRKIAIEYQCANLSIEQLCKRTYSYWKAGIRVIWIIGGNQLKKQSAYWMKFSSLMAFSLQSYPQPLLIFFCSKQKSFMKCTFLTSFSTSISFSHIIYLPTETTTFEMLFSSVPFQKEILEREWKKRKDYFRKNALPIWNYNHKSLLRLLYQCKCTPANFPSEIGVPLPSSFAFRTNPFIWQAFIYMKCIGELAVGDCISLEYVCSYIKKYTKRRMLPYFSQHIWKVAVTEYMTFLCYTGVLRKVGTYKYQKIRGIVMVKTEEEVMKYDESSLAYALSLFEAKYNMREGKADIIKTDREGIT

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Crispr_ID: NZ_CP053955_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP053955_4

5227791-5227888

Orphan

Consensus_repeat	Method
GGTGCAGGTGGTCTTCCATGATC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP053955_4

>merge|NZ_CP053955|4|5227791-5227888|CRISPRCasFinder
GGTGCAGGTGGTCTTCCATGATCCAGAGTAACCAATCCTGTTCTTCCATCGACAGAAATATAATCTGGTCGTTGTGGTGCAGGCGGTCTTCCATGATC

>NZ_CP053955|4|4|5227791-5227888|CRISPRCasFinder
GGTGCAGGTGGTCTTCCATGATC	CAGAGTAACCAATCCTGTTCTTCCATCGACAGAAATATAATCTGGTCGTTGT
GGTGCAGGCGGTCTTCCATGATC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP053955.1\|WP_000539548.1\|5239360_5239546_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379480
NZ_CP053955.1\|WP_001272193.1\|5218573_5219395_-\|glycerol-uptake-facilitator-protein-GlpF	unknown	unknown	gnl\|CDD\|223653
NZ_CP053955.1\|WP_000164430.1\|5223460_5223988_-\|DUF2199-domain-containing-protein	unknown	unknown	gnl\|CDD\|378329
NZ_CP053955.1\|WP_001242198.1\|5235029_5237954_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|227061
NZ_CP053955.1\|WP_000582776.1\|5239572_5239935_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053955.1\|WP_000724318.1\|5229421_5230075_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053955.1\|WP_000273536.1\|5240088_5240229_+\|YflJ-family-protein	unknown	unknown	gnl\|CDD\|288026
NZ_CP053955.1\|WP_144404806.1\|5222370_5223246_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
NZ_CP053955.1\|WP_000449227.1\|5222092_5222293_-\|sporulation-YhaL-family-protein	unknown	unknown	gnl\|CDD\|290852
NZ_CP053955.1\|WP_000726642.1\|5234043_5234988_-\|3'-5'-exoribonuclease-YhaM	unknown	unknown	gnl\|CDD\|237394
NZ_CP053955.1\|WP_002020640.1\|5237950_5239192_-\|DNA-repair-exonuclease	unknown	unknown	gnl\|CDD\|277319
NZ_CP053955.1\|WP_001038845.1\|5226483_5226996_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP053955.1\|WP_000760003.1\|5217069_5218560_-\|glycerol-kinase-GlpK	unknown	unknown	gnl\|CDD\|234594
NZ_CP053955.1\|WP_000394283.1\|5219623_5220184_-\|glycerol-uptake-operon-antiterminator-GlpP	unknown	unknown	gnl\|CDD\|377296
NZ_CP053955.1\|WP_001072541.1\|5224096_5225074_-\|ring-cleaving-dioxygenase	unknown	unknown	gnl\|CDD\|319935
NZ_CP053955.1\|WP_000554487.1\|5221068_5221920_-\|DUF2935-domain-containing-protein	unknown	unknown	gnl\|CDD\|378573
NZ_CP053955.1\|WP_000720972.1\|5232314_5233742_-\|serine-hydrolase	unknown	unknown	gnl\|CDD\|365903
NZ_CP053955.1\|WP_000272984.1\|5225118_5226063_-\|ring-cleaving-dioxygenase	unknown	unknown	gnl\|CDD\|319935
NZ_CP053955.1\|WP_000584824.1\|5227968_5229069_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376220
NZ_CP053955.1\|WP_001287203.1\|5230464_5231100_-\|DUF3967-domain-containing-protein	unknown	unknown	gnl\|CDD\|379171

Protein	Function_ID	Function_description	E-value
NZ_CP053955.1\|WP_000273536.1\|5240088_5240229_+\|YflJ-family-protein	gnl\|CDD\|288026	pfam11121, DUF2639, Protein of unknown function (DUF2639). This family is conserved in the Bacillaceae family. Several members are named as being YflJ, but the function is not known.	6.5418e-11
NZ_CP053955.1\|WP_000726642.1\|5234043_5234988_-\|3'-5'-exoribonuclease-YhaM	gnl\|CDD\|237394	PRK13480, PRK13480, 3'-5' exoribonuclease YhaM; Provisional.	0
NZ_CP053955.1\|WP_000164430.1\|5223460_5223988_-\|DUF2199-domain-containing-protein	gnl\|CDD\|378329	pfam09965, DUF2199, Uncharacterized protein conserved in bacteria (DUF2199). This domain, found in various hypothetical bacterial proteins, has no known function.	9.55446e-60
NZ_CP053955.1\|WP_001242198.1\|5235029_5237954_-\|AAA-family-ATPase	gnl\|CDD\|227061	COG4717, COG4717, Uncharacterized conserved protein [Function unknown].	1.70931e-114
NZ_CP053955.1\|WP_001272193.1\|5218573_5219395_-\|glycerol-uptake-facilitator-protein-GlpF	gnl\|CDD\|223653	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism].	9.00881e-85
NZ_CP053955.1\|WP_000449227.1\|5222092_5222293_-\|sporulation-YhaL-family-protein	gnl\|CDD\|290852	pfam14147, Spore_YhaL, Sporulation protein YhaL. This family of proteins is involved in sporulation. In B. subtilis its expression is regulated by the early mother-cell-specific transcription factor sigma-E.	8.03648e-23
NZ_CP053955.1\|WP_000539548.1\|5239360_5239546_+\|hypothetical-protein	gnl\|CDD\|379480	pfam14120, YhzD, YhzD-like protein. The YhzD-like protein family includes the B. subtilis YhzD protein, which is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 60 amino acids in length. There is a conserved GKL sequence motif.	2.1835e-23
NZ_CP053955.1\|WP_002020640.1\|5237950_5239192_-\|DNA-repair-exonuclease	gnl\|CDD\|277319	cd00840, MPP_Mre11_N, Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	2.13318e-58
NZ_CP053955.1\|WP_000760003.1\|5217069_5218560_-\|glycerol-kinase-GlpK	gnl\|CDD\|234594	PRK00047, glpK, glycerol kinase GlpK.	0
NZ_CP053955.1\|WP_000394283.1\|5219623_5220184_-\|glycerol-uptake-operon-antiterminator-GlpP	gnl\|CDD\|377296	pfam04309, G3P_antiterm, Glycerol-3-phosphate responsive antiterminator. Intracellular glycerol is usually converted to glycerol-3-phosphate in an ATP-requiring phosphorylation reaction catalyzed by glycerol kinase (GlpK) glycerol-3-phosphate activates the antiterminator GlpP.	5.39613e-79
NZ_CP053955.1\|WP_001072541.1\|5224096_5225074_-\|ring-cleaving-dioxygenase	gnl\|CDD\|319935	cd08347, PcpA_C_like, C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.	3.79926e-63
NZ_CP053955.1\|WP_000554487.1\|5221068_5221920_-\|DUF2935-domain-containing-protein	gnl\|CDD\|378573	pfam11155, DUF2935, Domain of unknown function (DUF2935). This family of proteins with unknown function appears to be restricted to Firmicutes. The structure of this protein has been solved and each domain is composed of four alpha helices. A metal cluster composed of iron and magnesium lies between the two domains.	6.48249e-35
NZ_CP053955.1\|WP_144404806.1\|5222370_5223246_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.70361e-36
NZ_CP053955.1\|WP_000720972.1\|5232314_5233742_-\|serine-hydrolase	gnl\|CDD\|365903	pfam00144, Beta-lactamase, Beta-lactamase. This family appears to be distantly related to pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	5.63456e-62
NZ_CP053955.1\|WP_000272984.1\|5225118_5226063_-\|ring-cleaving-dioxygenase	gnl\|CDD\|319935	cd08347, PcpA_C_like, C-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The C-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.	1.83711e-67
NZ_CP053955.1\|WP_000584824.1\|5227968_5229069_-\|hypothetical-protein	gnl\|CDD\|376220	pfam18801, RapH_N, response regulator aspartate phosphatase H, N terminal. Rap proteins consist of a N-terminal 3-helix bundle and a tetratricopeptide domain. This entry represents the conserved region of the C-terminal bundle.	1.58696e-15
NZ_CP053955.1\|WP_001287203.1\|5230464_5231100_-\|DUF3967-domain-containing-protein	gnl\|CDD\|379171	pfam13411, MerR_1, MerR HTH family regulatory protein.	8.58575e-06

>NZ_CP053955.1|WP_001038845.1|5226483_5226996_+|hypothetical-protein
MNKNISLLTLSLFLYLSACSTETNTDSTSTTEQPKVKTASIQQEENRKPIFFQGKEIKNIELISTKVKNKKAVINLQFDQIIKSMEHTGIDKDRERVIPLLLDDEAKANIDYQMNVNYQDGSNETYLIWLEDKKVIIARQDNEEQKNLEHYIIRDTDAQQILRLFKNNVE
>NZ_CP053955.1|WP_000272984.1|5225118_5226063_-|ring-cleaving-dioxygenase
MYEIKGHHHISMVTKNANENNHFYKNVLGLRRVKMTVNQDDPSMYHLFYGDKTGSPGTELTFFEIPLVGKTYRGTNAITRIGLLVPSEDSLHYWKARFEKFDVKHGEITTYANRPALQFEDAEGLRLVLLVSNGEKVEHWETWEKSEVPAEHQIQGMGSVEMTVRRLDKMASTLTDMFGYTEVSRSEEEAIFQSIKGEAFGEIVVKYLDGPTEKPGRGSIHHLAIRVKNDTELAYWEEQVIQRGFQSSGIIDRFYFKSLYFRESNGILFEIATDGPGFTVDGDVEHLGEKLDLPPFLENQRAEIEANLAPIEEK
>NZ_CP053955.1|WP_001072541.1|5224096_5225074_-|ring-cleaving-dioxygenase
MNQLKGIHHVTAITSSAEKNYEFFTHVLGMRLVKKTVNQDDIQTYHLFFADDKGSAGTDMTFFDFPGIPKGVHGTNEISKTSFRVPTDAALAYWVKRFDRLEVEHTGIKEQFGKKTLSFVDFDDQHYQLISDELDKGIESGTPWQNGPVPLEYAITGLGPVFIRIANFSFFKEVLEKVLLFKEVAQEGEFYLFEVNKGGNGASVIVEHNTVLPEARQGFGTVHHAAFRVEDRAVLEEWIERISSVGLPSSGYVDRHFFESLYARVAPQILFEFATDGPGFMGDEPYETLGEKLSLPPFLEPKREEIEKLVRPIDTVRSTKEFIKE
>NZ_CP053955.1|WP_000164430.1|5223460_5223988_-|DUF2199-domain-containing-protein
MTKMSGYTCRCCGTYHEEIPTSYGSAAPFYYYDAEPEEREDRFEMNDDLCVMDGEHFFMRGSIEIPIIGTDEHFIWGVWVSLSEANFDKVNECWDKQELLEPMFGWLSTDLPYELETVSLKTMVHPRADGIRPYIELEPTDHPLAVEFREGITMERVQEIAEQLCVNNEDDEEEC
>NZ_CP053955.1|WP_144404806.1|5222370_5223246_-|alpha/beta-hydrolase
MKRFKFYMISGIVLVLLIICNFVDKPIAKVGEVKDTVMMKLNTKESMAQIDGQTIYFKKIGEGKPPLLMLHGFGGSSDGFSDIYPELARDHTIIAVDILGFGRSSKPVDFEYSFPAQVNLYYKLMKKLGYDQFAVLGHSMGGEMSLNLAYLYPDAVTHLILADSTGIESFQQKESYEVPPLSTDLQTVTEITDYNKNEVKNSRDDKEHYDQLTKMRERRIAMEADKIKVPTLIIWGRNDKSVSWKNGELYHGLFVNSTFHIIEKGYHAPFRQEPIEFMEYVQAFFAKNPQR
>NZ_CP053955.1|WP_000449227.1|5222092_5222293_-|sporulation-YhaL-family-protein
METLPWWVYLVIVGIVLSGYMVLYTSKKEQEMDNEFIEKEGEVYMKRLAEEREKRNQDSDKDSVLL
>NZ_CP053955.1|WP_000554487.1|5221068_5221920_-|DUF2935-domain-containing-protein
MHRDETSLHPDTGVTSVMFVERSLNEIRFWSRIMKEHSLFLRLGFRCEDTQLIEEANQFYRLFEHIEQIAHSYTNETDPEQIKRFNAEVQQAATNIWGFKRKILGLILTCKLPGQNNFPLLVDHTSREADYFRKRLMELNEGKLDALPDAIIKENVFFLRIMADHAKFIGHLLDPSERKLVDTARNFSNDFDALMYQAIDLESMKPQSQTVPLLDQFLDQNRVSVASLRDFKKTARDLIEQCKIKSIIHPLLADHVFREADRFLEIIDMYDVHLTNIQSQPRY
>NZ_CP053955.1|WP_000394283.1|5219623_5220184_-|glycerol-uptake-operon-antiterminator-GlpP
MEFHEQKILPAVRQIKDLEKLLHSSYEYIVILDIHVGQLKSVISLAKQYCKKVFLHVDLIHGLQSDGHATEYLCQEFRPYGLLSTKASVIMKAKQKGVVAIQRIFLIDSSAMEKSCNLLDKTKPDYIEVLPGALTDVIAEVKERTGVPILAGGFIRTVDDVEKALNAGATAITTSKRELWKHYQKK
>NZ_CP053955.1|WP_001272193.1|5218573_5219395_-|glycerol-uptake-facilitator-protein-GlpF
MSAFLGELIGTALLIVLGGGVCAGVSLKKSFAKDSGWIVITMGWGLAVAVAAYAVGSISGAHLNPALTIGLAFKGAFPWSDVPGYIAAQMIGAIIGAVIVYLHYLPHWKETEDPGTKLGVFATGPAIPNTFANLLSEMIGTFVLVFGILAIGANKFADGLNPFIVGFLIVSIGLSLGGTTGYAINPARDLGPRIAHFFLPIAGKGGSNWKYAWIPVVGPILGGSLAGLFHQVVFEGKQNAALIYVIIATVIVLAISYMTSKKSGSNTNSRKVA
>NZ_CP053955.1|WP_000760003.1|5217069_5218560_-|glycerol-kinase-GlpK
MKKYILSLDQGTTSSRAILFNKKGEIVHSAQKEFTQHFPKPGWVEHNAQEIWGSILAVIATCLSEADVKPEQIAGIGITNQRETTVVWDKTTSKPIYNAIVWQSRQTAEICDELKEKGYGEMVREKTGLLIDAYFSGTKVKWILDNVEGAREKAENGDLLFGTIDSWLVWKLSGGKAHVTDYSNASRTLMFNIHDLQWDDELLEMLTVPKSMLPEVRPSSEVYGETIDYHFFGQNVPIAGVAGDQQAALFGQACFGEGMAKNTYGTGCFMLMNTGEKAVASEHGLLTTIAWGIDGKVNYALEGSIFVAGSAIQWLRDGMRMFKDASESEVYASRVESTDGVYVVPAFVGLGTPYWDSEVRGAMFGVTRGTTKEHFIRATLESLAYQTKDVLCAMEADSGIELKTLRVDGGAVKNNFLMKFQSDILDVPVERPVINETTALGAAYLAGLAVGYWKNQDEIKEQWHMDKRFEPTMEAKTSEELYAGWKKAIEATKAFK
>NZ_CP053955.1|WP_000584824.1|5227968_5229069_-|hypothetical-protein
MIILNNEKVTKLLNEWYKVILSKQITKATRMKEEVDEKISVLMVEQNRDLQNQNLLLYYSLLDYSYKVLINKSYVTRSDFDAVEKLTTKTIDEYLKYYYHFYKAVHNTMIANYMEAMEQFEEAERLLEYIPNDIEKAEFNYKLGELYYHLQQPLLTIKHVMKAKDIYKNHEEYVINQIECDTILGLASVTLSQFEQGEELFVKCLDMAKKHNCTRLITLIQYNLGFLYAKQGISATAIRHLMDVYKSERPYHKTVFLLAREHFKLNEIEKAQEFLIQGFDLADVEYTHHFRILRAQYDENYKQSLETVIKDGLNYFESQKLYGFMEEYSGILAKKLYQEGNHEKASQYFNIFYDAKELLQKGSALK
>NZ_CP053955.1|WP_000724318.1|5229421_5230075_+|hypothetical-protein
MKKISRVLSVAGLSLAIFGGGTIASAAEDNTVDSNVKKGNVLDVSDQSNVQMGEVLTFGELVNQIAEDTNKPKEEVYQQLLAQGKARGQSTEATLAATFRTLTSEFEVTLFYSPSVRFYCETNEWGGSFRGIKEIKYINMNRSSGGITKTFTGTVQANLEDANRIFYIVNGDFYNNGTTTVNGGVSITLGKSGSANFSASYASNHYKYTYKEGNIYF
>NZ_CP053955.1|WP_001287203.1|5230464_5231100_-|DUF3967-domain-containing-protein
MSEAEIVYTSNEVYSRLGVSGSTLRKYSDVLEREGYDVRKNSRGRREYTEFDVVLIEQLVELSKQDGMTLEKAAKMIAKQFGIANKKEESQGTDPVPYQMQYQFQQQYSAMIEEINKVQQANLLEMEKRLGDRIDQKNKLIEEDIKERNKLIMEDMRDRKEREERIEKRLELRDDNLMKMVREIQEAKRTIVSAQEEIAAAKKKSWWKFWK
>NZ_CP053955.1|WP_000720972.1|5232314_5233742_-|serine-hydrolase
MKKIIVFVLTIFILFSGFATQSYALSDSQSAAIQALLDDACRISGVPGMSISILADDEVFYFSSGYADREKGLSASENTLYELASVSKAFTGMGIMLLEEQGLLSMTDPVQKYLPWFTLKYQGKPVDMQSLTLNNFLHHTSGLTNIRHLQNIPQGNTPDMLQKTVEMLVDAELAFPPGEQYNYGTVNYDVLGLVIEIVSRQSYEDFMKEQVFQPLGLHQTYVYKEAAQATGQLAQGYRSSFFMTTPFKAPDYAGNKPAGYIISNTKDMARWMGIQMGIVQDIPEIFHKVIEKSHRGDMSVAAVNGMYYAAGWSVNAEQTIIEHTGGNPNFRTEVVILPNERTAVSLLSNGANTNTNMVLKVKDILEGNLTQSYEISGTQLLDIILSSITIIFCLLAVLLFLLGLRRRRTNERQPMTKKRITVTVIFLTATIALGILCCAFDWSTILMWQTYSVLTALISSALLTASITWFVYTHR
>NZ_CP053955.1|WP_000726642.1|5234043_5234988_-|3'-5'-exoribonuclease-YhaM
MKKKIAEYEVGEQVDVFLLIKTATKGIASNGKPFLTVILQDPSGDIEAKLWDVSPEVEKQYVAETIVKVAGDILNYKGRIQLRVKQIRVANENEVTDISDFVEKAPVKKEDMVEKITQYIFEMRNPNIQRLTRHLLNKHQNEFLDYPAATKNHHEFVSGLAYHVVSMLDLAKAISNLYPSLDKDLLYAGVILHDLGKVIELSGPISTTYTLEGNLLGHISIMVNEIGKAADELQIDAEEVLILQHIVLSHHGKAEWGSPKPPLVKEAEILHYIDNLDAKMNMMDRALGRTKPGEYTERVFALDNRSFYKPSFHN
>NZ_CP053955.1|WP_001242198.1|5235029_5237954_-|AAA-family-ATPase
MRMEKLHIYGYGKLENVEMDLSMLTVLYGENEAGKSTIRSFMKSILFGFPTRGQRRYEPKEGGKYGGAMTVQTEKYGRLKIERLPKTAAGEVTVYFEDGKTGGEEILHDILSGMNESLFESVFSFDMHGLQNIHHLGEADIGNYLFSASAVGSDALLQLDKKLEKEMDQRFKPSGRKPEINVSLQEMKKLEEKMKEWQGKIGTYEKQVEQLKESEEKLASVRVEKENAEKRKQDYEILAALEPLVIEKRAHEKVLENENVQFPVNGMARYEAIKAKMEPLQLQVDSLHKKIENVQSEIESIQIDEDFLQKESYVEELRMQHMSYENARQEMRDLTGAITNIKEELAELEQQIGATFEKETVLSFDMSLATKELITQAVQKARELETQKAQLDDRFKVAQEQLEEQEENIRQIKQQMLADEERNALVEKEKSFQDAAFIGMGAERMKRKYEEKAGSAMQKKKQWQRVCLLLLLINTGILFTSLFIDNRPLLFISVIVFVGIVLALVLYKDPSSGLQEELLTLQQSAGGRQSEEAMSVRYELEKDEEIRKLFERESYKLQQMERAYDKVVSSYEEWERETFRTSEQVNAYKKRYTFPEFYTYAHILPAFERMEKMQQLYRDLEKKSERKSSLFEMISQFEHKLETVIGSVEYSKLHEAQSRMQNEKEKRQTCKQLKEKLAEWQEEYALMQEQLKQLLVERDSLWNIAHSTDEEMFLEAGKLAEKREDAEKQVGRLLPQIDLLEQRLTSLSLAEHYEADGYEEKLKQEMTTAQNCLTKEKELTERIAKHRMEIANLEEGSTYGDLMHEWEMKKAQVREQVKKWAAYAAAKTVLTKTKQYYHEVHLPRILQKSEEYFVYLTGGRYSKIFSPSEAEPFIVERNDGMRFYSHELSQATAEQLYLSLRFALANTFEHDYPFIIDDSFVHFDAVRTNRTIELIKEIAKDRQVIFFTCHAHLLAYFTEKQIIKLTHMRKENEL
>NZ_CP053955.1|WP_002020640.1|5237950_5239192_-|DNA-repair-exonuclease
MKQVKFIHAADLHLDSPFKGMEMNVPQSVWERMKQSTFESFERIVDKAIQERVDFVLLAGDLYDAETRSLRAQVFVREQMKRLSQYDIPVFIIHGNHDHLGGSWAAIEFPENVHVFTEPYVEEKSFYKNGELLASIYGFSYLQQSVTDNMTAQYTKMSDAPFHIGMLHGSVEGDVEHNRYAPFQIRELKEKQFDYWALGHIHKREILSEEPYIIYPGNIQGRHRKETGEKGAYLIELTKQGTHCSFFHTADVVWDEIEVNIDGLETVDELMTSVSSAMNECRREEEGTLLTVVFTGQGPLSPYLRDEKRVEEIFHILAAGEERKDFVYAMKWKNETVSFAEIERLKEENHFVGSVLKELEAFTNMDGVLRTIWTSPVARNSIESFTEEEKKEIQKEAENIILEQLFQQERDKK
>NZ_CP053955.1|WP_000539548.1|5239360_5239546_+|hypothetical-protein
MGVYVLTVFEKDGSKALDESFEAATEKEAKAKGESILKEKGLYEKTHRCTSTAGKLVLFQR
>NZ_CP053955.1|WP_000582776.1|5239572_5239935_-|hypothetical-protein
MIIEKHEIQIDQITSGKVNIFTFYRNRKQIDDHFLRLQEPSLTANYFFHFHFDAESLHLLQEEFPGVYPYDGSETIHDWTEKMKAELQHQIQTGKWNKRVRIGNRILDVVFTWCDEDIVE
>NZ_CP053955.1|WP_000273536.1|5240088_5240229_+|YflJ-family-protein
MYFGSKGWYVKELKKLGIRTYEGKKLESYRTHVLSSLLERMKKASA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

650480 : 658852

Synechococcus_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000088567.1\|650480_651068_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	5.9e-27	35.8
WP_001262445.1\|651064_652105_-	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F760	Synechococcus_phage	3.2e-68	45.9
WP_000879025.1\|652206_653622_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.3e-55	35.4
WP_000055573.1\|653606_655826_-	phosphoribosylformylglycinamidine synthase II	A6N228	Microbacterium_phage	2.6e-163	41.7
WP_000666779.1\|655809_656493_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_000278820.1\|656489_656744_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
WP_001170542.1\|656736_657456_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	G8EYA2	Synechococcus_phage	5.2e-49	44.3
WP_000625683.1\|657544_658852_-	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	6.4e-21	25.3

DBSCAN-SWA_2

696106 : 704054

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000719215.1\|696106_697612_-	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	1.2e-31	30.8
WP_000929888.1\|697595_698297_-	response regulator transcription factor	W8CYM9	Bacillus_phage	7.3e-40	36.9
WP_000833097.1\|698442_699768_-	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	9.2e-44	29.4
WP_162837124.1\|700150_701692_-	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	3.4e-21	31.2
WP_001029999.1\|702096_703731_-	chaperonin GroEL	A0A219YK78	uncultured_virus	2.0e-157	58.2
WP_000917306.1\|703769_704054_-	co-chaperone GroES	A0A221S3C8	uncultured_virus	1.2e-20	53.8

DBSCAN-SWA_3

1843323 : 1851003

uncultured_Caudovirales_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001036825.1\|1843323_1844307_+	iron ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	5.5e-17	26.6
WP_000403735.1\|1844296_1845067_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.2e-13	26.1
WP_000095596.1\|1845099_1845864_+	class B sortase	NA	NA	NA	NA
WP_000587813.1\|1845929_1846253_-	heme oxygenase	NA	NA	NA	NA
WP_001255960.1\|1846549_1847749_+	class I SAM-dependent rRNA methyltransferase	W6LLI2	Streptococcus_phage	1.0e-70	41.0
WP_001014308.1\|1847788_1847983_-	YwbE family protein	NA	NA	NA	NA
WP_001293578.1\|1847983_1848157_-	hypothetical protein	NA	NA	NA	NA
WP_000018025.1\|1848325_1849018_+	response regulator transcription factor	B5LWA6	Feldmannia_species_virus	1.4e-06	28.8
WP_000247664.1\|1849019_1849955_+	HAMP domain-containing histidine kinase	Q8QNA2	Ectocarpus_siliculosus_virus	4.3e-11	25.9
WP_000221087.1\|1850079_1851003_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.4e-46	44.0

DBSCAN-SWA_4

3558924 : 3567872

Geobacillus_phage(28.57%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_098228759.1\|3558924_3560269_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	2.1e-112	74.4
WP_000820165.1\|3560325_3560538_-	DUF3006 domain-containing protein	Q0H256	Geobacillus_phage	1.1e-12	54.4
WP_000714670.1\|3560540_3561926_-	S-layer homology domain-containing protein	Q0H255	Geobacillus_phage	1.7e-77	59.9
WP_000288951.1\|3562356_3562764_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_000648514.1\|3562777_3563131_+	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA
WP_000655485.1\|3563152_3563860_+	class I SAM-dependent methyltransferase	A0A1X9I6N4	Streptococcus_phage	3.9e-17	27.0
WP_001093429.1\|3563925_3564321_+	DUF2809 domain-containing protein	NA	NA	NA	NA
WP_000502493.1\|3564336_3565266_+	phosphotransferase	NA	NA	NA	NA
WP_000720537.1\|3565262_3565766_+	DNA topology modulation protein	A0A097BYE2	Leuconostoc_phage	3.3e-42	45.5
WP_001058132.1\|3565912_3566593_+	SUMF1/EgtB/PvdO family nonheme iron enzyme	A0A075BUR2	Microcystis_phage	2.7e-31	39.2
WP_000124910.1\|3566678_3567872_+	glycosyl transferase family 1	Q0IKX4	Leucania_separata_nucleopolyhedrovirus	3.7e-07	27.9

DBSCAN-SWA_5

3707437 : 3771740

Bacillus_phage(65.85%)

head,terminase,integrase,tail,protease,tRNA,bacteriocin,capsid,portal

attL 3742386:3742402|attR 3775994:3776010

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000753403.1\|3707437_3708505_-	N-acetylmuramoyl-L-alanine amidase	A0A1B1P878	Bacillus_phage	1.3e-192	92.6
WP_000254143.1\|3708501_3708741_-	hypothetical protein	A0A2H4J378	uncultured_Caudovirales_phage	4.7e-31	94.9
WP_000398745.1\|3708740_3708977_-	hemolysin XhlA family protein	A0A2H4J382	uncultured_Caudovirales_phage	1.5e-18	96.2
WP_001260170.1\|3709015_3713011_-\|tail	tail fiber domain-containing protein	Q2LIB7	Bacillus_phage	0.0e+00	97.6
WP_000517348.1\|3713007_3714498_-\|tail	phage tail family protein	Q2LIB8	Bacillus_phage	3.6e-294	99.8
WP_001262735.1\|3714512_3718343_-\|tail	phage tail tape measure protein	A0A288WG36	Bacillus_phage	0.0e+00	92.9
WP_000344045.1\|3718358_3718535_-	hypothetical protein	I3WTY5	Bacillus_phage	9.4e-21	86.2
WP_000778621.1\|3718564_3718879_-	hypothetical protein	A0A288WFU6	Bacillus_phage	2.0e-50	96.2
WP_000896779.1\|3718928_3719537_-\|tail	tail protein	A0A288WG55	Bacillus_phage	1.8e-103	98.0
WP_000609199.1\|3719537_3719897_-	DUF3168 domain-containing protein	A0A0S2GLE3	Bacillus_phage	4.7e-59	95.0
WP_000763227.1\|3719893_3720331_-	HK97 gp10 family phage protein	A0A288WGM7	Bacillus_phage	1.5e-75	98.6
WP_001068014.1\|3720323_3720647_-\|head	phage head closure protein	H0USW8	Bacillus_phage	5.0e-52	90.7
WP_000244595.1\|3720643_3720922_-\|head,tail	phage gp6-like head-tail connector protein	H0USW7	Bacillus_phage	9.9e-41	95.6
WP_000361135.1\|3720942_3722115_-\|capsid	phage major capsid protein	A0A2H4J387	uncultured_Caudovirales_phage	2.5e-194	89.0
WP_001259157.1\|3722152_3722863_-\|protease	Clp protease ClpP	W8CYT5	Bacillus_phage	4.8e-124	94.9
WP_000577487.1\|3722849_3724103_-\|portal	phage portal protein	A0A2H4J371	uncultured_Caudovirales_phage	9.1e-235	96.4
WP_000621125.1\|3724291_3725986_-\|terminase	terminase large subunit	A0A2H4JB98	uncultured_Caudovirales_phage	6.9e-310	98.6
WP_000251639.1\|3725987_3726491_-\|terminase	phage terminase small subunit P27 family	A0A2H4J8E3	uncultured_Caudovirales_phage	2.6e-87	98.8
WP_001139458.1\|3726620_3726998_-	HNH endonuclease	A0A0S2GLI5	Bacillus_phage	3.8e-67	96.8
WP_001198491.1\|3726987_3727242_-	hypothetical protein	A0A0S2GLL6	Bacillus_phage	2.0e-35	83.3
WP_000777414.1\|3727260_3727467_-	hypothetical protein	H0USV9	Bacillus_phage	1.1e-25	86.8
WP_162484126.1\|3727466_3727622_-	hypothetical protein	NA	NA	NA	NA
WP_000773979.1\|3727764_3728145_+	DUF2513 domain-containing protein	A0A1Q1PVT8	Staphylococcus_phage	5.9e-20	45.2
WP_000127963.1\|3728141_3728375_-	hypothetical protein	A0A0K2CZF4	Paenibacillus_phage	7.3e-05	38.4
WP_001209235.1\|3728749_3729646_-	hypothetical protein	NA	NA	NA	NA
WP_033685975.1\|3730282_3730669_+	SET domain-containing protein-lysine N-methyltransferase	NA	NA	NA	NA
WP_000113638.1\|3730839_3731892_+	S8 family serine peptidase	A0A2L0UZX3	Agrobacterium_phage	5.0e-08	27.3
WP_000158572.1\|3733012_3733717_-	hypothetical protein	NA	NA	NA	NA
WP_001012105.1\|3734388_3734931_-\|integrase	site-specific integrase	A0A0S2GLG4	Bacillus_phage	6.8e-86	88.9
WP_000166203.1\|3734930_3735413_-	ArpU family transcriptional regulator	H0USV3	Bacillus_phage	7.7e-73	83.1
WP_000677453.1\|3735440_3735611_-	hypothetical protein	A0A1B0T6D0	Bacillus_phage	1.0e-11	82.1
WP_002021485.1\|3735726_3735849_-	DUF3983 domain-containing protein	NA	NA	NA	NA
WP_000227777.1\|3736600_3736828_-	hypothetical protein	NA	NA	NA	NA
WP_000343917.1\|3737805_3738951_+	exosporium leader peptide-containing protein	NA	NA	NA	NA
WP_001054606.1\|3739132_3739642_-	dUTP diphosphatase	A0A1L2JY27	Aeribacillus_phage	2.0e-26	44.8
WP_000109493.1\|3739661_3739913_-	hypothetical protein	A0A0K2CNP4	Brevibacillus_phage	1.7e-07	43.8
WP_000717820.1\|3739938_3740106_-	DUF3954 domain-containing protein	A0A1B0T6B8	Bacillus_phage	1.8e-13	64.2
WP_001125953.1\|3740124_3740484_-	hypothetical protein	A0A1B1P7A1	Bacillus_phage	1.4e-31	52.5
WP_000799079.1\|3740476_3740755_-	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	A0A2I7SC16	Paenibacillus_phage	6.0e-14	62.7
WP_000337989.1\|3740771_3740966_-	hypothetical protein	A0A0U3K3J8	Bacillus_phage	1.5e-24	82.8
WP_001148232.1\|3740968_3741832_-	ATP-binding protein	A0A1B0T6C3	Bacillus_phage	4.2e-130	92.9
WP_000190241.1\|3741779_3742502_-	DnaD domain protein	A0A1B0T6C0	Bacillus_phage	3.0e-89	87.1
3742386:3742402	attL	NA	NA	NA	NA
WP_000390254.1\|3742695_3742860_-	hypothetical protein	A0A0U3B230	Bacillus_phage	1.3e-13	63.0
WP_000522016.1\|3742859_3743126_-	helix-turn-helix domain-containing protein	A0A0U3ULL9	Bacillus_phage	1.9e-33	84.7
WP_048567700.1\|3743247_3743457_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000041816.1\|3743625_3743964_+	helix-turn-helix transcriptional regulator	H0UST7	Bacillus_phage	3.6e-21	54.3
WP_000527328.1\|3743983_3744124_-	hypothetical protein	NA	NA	NA	NA
WP_000724592.1\|3744244_3744394_-	hypothetical protein	NA	NA	NA	NA
WP_001045097.1\|3744406_3745504_-	hypothetical protein	NA	NA	NA	NA
WP_033692786.1\|3746122_3747325_-	collagen-like protein	NA	NA	NA	NA
WP_000675848.1\|3747629_3748739_+\|integrase	site-specific integrase	A0A0U3U8Y8	Bacillus_phage	2.2e-147	78.1
WP_000359666.1\|3748807_3749479_-	DUF3962 domain-containing protein	NA	NA	NA	NA
WP_000569107.1\|3749780_3750260_-	hypothetical protein	NA	NA	NA	NA
WP_001071397.1\|3750793_3751093_-\|bacteriocin	heterocycloanthracin/sonorensin family bacteriocin	NA	NA	NA	NA
WP_000144499.1\|3751739_3752429_-	thiaminase II	NA	NA	NA	NA
WP_001219729.1\|3752729_3753644_-	D-alanine--D-alanine ligase	NA	NA	NA	NA
WP_000471633.1\|3753648_3755097_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
WP_000695917.1\|3755373_3756414_-	homoserine dehydrogenase	NA	NA	NA	NA
WP_000517047.1\|3756501_3757743_-	lipase	NA	NA	NA	NA
WP_001165505.1\|3757997_3758339_+	DUF3914 domain-containing protein	NA	NA	NA	NA
WP_000753239.1\|3758407_3759073_-	hypothetical protein	NA	NA	NA	NA
WP_000144185.1\|3759140_3761075_-	FtsX-like permease family protein	NA	NA	NA	NA
WP_000404272.1\|3761049_3761820_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.1e-32	40.4
WP_000547458.1\|3762134_3762671_-	DUF3267 domain-containing protein	NA	NA	NA	NA
WP_033692787.1\|3763110_3763704_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_033686435.1\|3763724_3765353_-	ABC-F type ribosomal protection protein	A0A1B0RXA0	Streptococcus_phage	2.9e-55	30.2
WP_000376269.1\|3765897_3766524_+	hypothetical protein	NA	NA	NA	NA
WP_000593186.1\|3766825_3767809_-	sensor histidine kinase	NA	NA	NA	NA
WP_000238967.1\|3767805_3768513_-	response regulator transcription factor	NA	NA	NA	NA
WP_000285749.1\|3768633_3769548_-	acetamidase/formamidase family protein	NA	NA	NA	NA
WP_001128415.1\|3769699_3770128_+	cell wall hydrolase	NA	NA	NA	NA
WP_002022941.1\|3770318_3771740_-\|tRNA	lysine--tRNA ligase	NA	NA	NA	NA
3775994:3776010	attR	NA	NA	NA	NA

DBSCAN-SWA_6

4383316 : 4392636

Bacillus_phage(71.43%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001258498.1\|4383316_4384189_-	aminoglycoside 6-adenylyltransferase	A0A1X9I6F2	Streptococcus_phage	4.0e-64	42.9
WP_000061719.1\|4384321_4384999_-	O-methyltransferase	W8CYT3	Bacillus_phage	5.5e-61	88.5
WP_000818985.1\|4385146_4385866_-	3-ketoacyl-ACP reductase	W8CYX9	Bacillus_phage	5.9e-61	100.0
WP_000823555.1\|4386062_4386647_+	DUF3139 domain-containing protein	NA	NA	NA	NA
WP_001254410.1\|4386670_4387744_-	sensor histidine kinase	W8CYF6	Bacillus_phage	3.5e-174	89.6
WP_139254152.1\|4387740_4388445_-	response regulator	W8CYM9	Bacillus_phage	6.5e-121	92.7
WP_000453899.1\|4388506_4390267_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.1e-270	96.9
WP_001194292.1\|4390506_4391271_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_000755549.1\|4391367_4392636_-	C40 family peptidase	A0A1V0DZX6	Clostridioides_phage	7.6e-11	32.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP053955

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection