CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_AP023204	Escherichia coli strain TUM18780 plasmid pMTY18780-7, complete sequence	0 crisprs	NA	0	0
NZ_AP023203	Escherichia coli strain TUM18780 plasmid pMTY18780-6, complete sequence	0 crisprs	NA	0	0
NZ_AP023202	Escherichia coli strain TUM18780 plasmid pMTY18780-5_IncX3, complete sequence	0 crisprs	NA	0	0
NZ_AP023199	Escherichia coli strain TUM18780 plasmid pMTY18780-2, complete sequence	0 crisprs	csa3	0	1
NZ_AP023201	Escherichia coli strain TUM18780 plasmid pMTY18780-4, complete sequence	0 crisprs	NA	0	5
NZ_AP023197	Escherichia coli strain TUM18780	9 crisprs	csa3,PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas2,DEDDh,DinG,c2c9_V-U4,RT,WYL	18	4
NZ_AP023198	Escherichia coli strain TUM18780 plasmid pMTY18780-1_lncHI2, complete sequence	0 crisprs	NA	0	2
NZ_AP023200	Escherichia coli strain TUM18780 plasmid pMTY18780-3, complete sequence	0 crisprs	DEDDh	0	2

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 13364

Leptospira_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032141117.1\|183_606_-	hypothetical protein	NA	NA	NA	NA
WP_032141118.1\|626_1160_-	conjugative transfer signal peptidase TraF	NA	NA	NA	NA
WP_032141119.1\|1156_3103_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA
WP_032141120.1\|3089_3284_-	hypothetical protein	NA	NA	NA	NA
WP_174402705.1\|3280_5914_-	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA
WP_003019745.1\|5942_6302_-	conjugal transfer transcriptional regulator TraJ	NA	NA	NA	NA
WP_032141122.1\|6651_7086_+	TraK family protein	NA	NA	NA	NA
WP_032141123.1\|7085_7871_+	conjugal transfer protein TraL	NA	NA	NA	NA
WP_032141124.1\|7870_8311_+	conjugal transfer protein TraM	NA	NA	NA	NA
WP_170930245.1\|8400_8595_+	hypothetical protein	NA	NA	NA	NA
WP_032141163.1\|8700_9177_-	hypothetical protein	NA	NA	NA	NA
WP_174402706.1\|9557_10238_-	traN-like protein	NA	NA	NA	NA
WP_003019728.1\|10259_11273_-	Fic family protein	NA	NA	NA	NA
WP_003019726.1\|11269_11467_-	antitoxin VbhA family protein	NA	NA	NA	NA
WP_032141127.1\|11592_12606_-	ParB/RepB/Spo0J family partition protein	S5VSZ7	Leptospira_phage	6.7e-10	29.4
WP_024189760.1\|12605_13364_-	ParA family protein	E9LUK9	Lactobacillus_phage	2.6e-06	22.7

DBSCAN-SWA_2

20359 : 26130

Escherichia_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032141136.1\|20359_20827_-	antirestriction protein	A0A2D0W9W4	Bordetella_phage	2.3e-13	34.7
WP_032141137.1\|21259_21610_-	hypothetical protein	NA	NA	NA	NA
WP_032141138.1\|21633_21921_-	hypothetical protein	NA	NA	NA	NA
WP_024252921.1\|21971_22169_-	DUF905 family protein	NA	NA	NA	NA
WP_032141139.1\|22266_22854_-	hypothetical protein	NA	NA	NA	NA
WP_032141165.1\|22850_23102_-	hypothetical protein	NA	NA	NA	NA
WP_032141140.1\|23101_23407_-	HigA family addiction module antidote protein	A0A222YWD7	Escherichia_phage	1.6e-12	44.0
WP_032141141.1\|23418_23718_-	type II toxin-antitoxin system RelE/ParE family toxin	A0A222YWE2	Escherichia_phage	1.5e-18	48.4
WP_032141142.1\|24771_25665_-	replication initiator protein A	NA	NA	NA	NA
WP_094259118.1\|25758_26130_-	single-stranded DNA-binding protein	A0A2P1CCB9	Lactobacillus_phage	9.2e-18	42.1

DBSCAN-SWA_3

38300 : 41335

Xanthomonas_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_074422775.1\|38300_38987_+	conjugal transfer protein TraX	A0A1W6DY89	Xanthomonas_phage	1.4e-24	34.0
WP_174402712.1\|39586_39907_-	hypothetical protein	NA	NA	NA	NA
WP_039696288.1\|40448_40679_-	hypothetical protein	NA	NA	NA	NA
WP_174402713.1\|40831_41335_-	thermonuclease family protein	A0A0R6PHV6	Moraxella_phage	2.6e-15	36.4

DBSCAN-SWA_4

47065 : 47389

Salmonella_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_071993427.1\|47065_47389_+	hypothetical protein	J9Q7T5	Salmonella_phage	5.9e-21	57.5

DBSCAN-SWA_5

51139 : 55099

Caulobacter_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_174402717.1\|51139_55099_-	DUF1738 domain-containing protein	A0A1V0EBY3	Caulobacter_phage	5.8e-33	38.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_AP023197

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CRISPR-Cas detection and classification

Crispr_ID: NZ_AP023197_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP023197_1

681370-681509

Orphan

Consensus_repeat	Method
ACATGTAGGGCGGATAAGGCGTTCACGCCGCATCCGCCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP023197_1

>merge|NZ_AP023197|1|681370-681509|CRISPRCasFinder
ACATGTAGGGCGGATAAGGCGTTCACGCCGCATCCGCCAGTGGCGCGGTGCAGATGCCGGATGCGACGCTTGTCGCGTCTTATCCGGCCTACGGGAACGAACATGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCCAG

>NZ_AP023197|1|1|681370-681509|CRISPRCasFinder
ACATGTAGGGCGGATAAGGCGTTCACGCCGCATCCGCCAG	TGGCGCGGTGCAGATGCCGGATGCGACGCTTGTCGCGTCTTATCCGGCCTACGGGAACGA
ACATGTAGGGCGGATAAGGCGTTTACGCCGCATCCGCCAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP023197.1\|WP_000450589.1\|691511_691844_+\|tRNA-binding-protein	unknown	unknown	gnl\|CDD\|182232
NZ_AP023197.1\|WP_000018005.1\|695250_695874_-\|DNA-binding-transcriptional-regulator-NfeR	unknown	unknown	gnl\|CDD\|224609
NZ_AP023197.1\|WP_001718894.1\|675506_676493_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_AP023197.1\|WP_001295542.1\|677340_677844_-\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|224368
NZ_AP023197.1\|WP_139821334.1\|673847_674150_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP023197.1\|WP_001098805.1\|674258_675224_-\|TerC-family-membrane-protein-Alx	unknown	unknown	gnl\|CDD\|274743
NZ_AP023197.1\|WP_040234981.1\|686587_687037_-\|beta-galactosidase-subunit-beta	unknown	unknown	gnl\|CDD\|182302
NZ_AP023197.1\|WP_001285446.1\|685091_686525_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|237929
NZ_AP023197.1\|WP_040234983.1\|681519_683871_-\|alpha-glucosidase	unknown	unknown	gnl\|CDD\|236653
NZ_AP023197.1\|WP_000212464.1\|690309_691293_-\|transcriptional-regulator-EbgR	unknown	unknown	gnl\|CDD\|182389
NZ_AP023197.1\|WP_040234977.1\|693682_695203_+\|aerotaxis-sensor-receptor-Aer	unknown	unknown	gnl\|CDD\|214599
NZ_AP023197.1\|WP_040234985.1\|677928_679065_+\|23S-rRNA-(guanine(1835)-N(2))-methyltransferase-RlmG	unknown	unknown	gnl\|CDD\|184963
NZ_AP023197.1\|WP_000211655.1\|672398_673643_-\|serine/threonine-transporter-SstT	unknown	unknown	gnl\|CDD\|184190
NZ_AP023197.1\|WP_000767654.1\|683887_684958_-\|protein-YgjJ	unknown	unknown	unknown
NZ_AP023197.1\|WP_001199352.1\|670272_671760_+\|altronate-dehydratase	unknown	unknown	gnl\|CDD\|377287
NZ_AP023197.1\|WP_001297164.1\|691885_693265_-\|putrescine-aminotransferase	unknown	unknown	gnl\|CDD\|183175
NZ_AP023197.1\|WP_040234984.1\|679175_681194_-\|NADPH-dependent-2,4-dienoyl-CoA-reductase	unknown	unknown	gnl\|CDD\|239240
NZ_AP023197.1\|WP_000128136.1\|671842_672394_+\|YgjV-family-protein	unknown	unknown	gnl\|CDD\|378474
NZ_AP023197.1\|WP_040234987.1\|676571_677264_-\|vancomycin-high-temperature-exclusion-protein	unknown	unknown	gnl\|CDD\|225500
NZ_AP023197.1\|WP_174402606.1\|687033_690126_-\|beta-galactosidase-subunit-alpha	unknown	unknown	gnl\|CDD\|236673

Protein	Function_ID	Function_description	E-value
NZ_AP023197.1\|WP_000450589.1\|691511_691844_+\|tRNA-binding-protein	gnl\|CDD\|182232	PRK10089, PRK10089, chaperone CsaA.	2.09366e-49
NZ_AP023197.1\|WP_000018005.1\|695250_695874_-\|DNA-binding-transcriptional-regulator-NfeR	gnl\|CDD\|224609	COG1695, COG1695, Predicted transcriptional regulators [Transcription].	4.34438e-31
NZ_AP023197.1\|WP_001718894.1\|675506_676493_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	6.26234e-62
NZ_AP023197.1\|WP_001295542.1\|677340_677844_-\|M48-family-metallopeptidase	gnl\|CDD\|224368	COG1451, COG1451, Predicted metal-dependent hydrolase [General function prediction only].	1.41935e-43
NZ_AP023197.1\|WP_040234983.1\|681519_683871_-\|alpha-glucosidase	gnl\|CDD\|236653	PRK10137, PRK10137, alpha-glucosidase; Provisional.	0
NZ_AP023197.1\|WP_001098805.1\|674258_675224_-\|TerC-family-membrane-protein-Alx	gnl\|CDD\|274743	TIGR03718, R_switched_Alx, integral membrane protein, TerC family. Rfam model RF00080 describes a structured RNA element called the yybP-ykoY leader, or SraF, which may precede one or several genes in a genome. Members of this highly hydrophobic protein family often are preceded by a yybP-ykoY leader, which may serve as a riboswitch. From the larger group of TerC homologs (pfam03741), this subfamily contains TerC itself from Alcaligenes sp. plasmid IncHI2 pMER610 and from Proteus mirabilis. It also contains the alkaline-inducible E. coli protein Alx, which unlike the two TerC examples is preceded by a yybP-ykoY leader.	1.50615e-141
NZ_AP023197.1\|WP_040234981.1\|686587_687037_-\|beta-galactosidase-subunit-beta	gnl\|CDD\|182302	PRK10202, ebgC, beta-galactosidase subunit beta.	2.49567e-93
NZ_AP023197.1\|WP_001285446.1\|685091_686525_-\|amino-acid-permease	gnl\|CDD\|237929	PRK15238, PRK15238, inner membrane transporter YjeM; Provisional.	7.40743e-43
NZ_AP023197.1\|WP_000212464.1\|690309_691293_-\|transcriptional-regulator-EbgR	gnl\|CDD\|182389	PRK10339, PRK10339, DNA-binding transcriptional repressor EbgR; Provisional.	0
NZ_AP023197.1\|WP_040234977.1\|693682_695203_+\|aerotaxis-sensor-receptor-Aer	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	5.75407e-74
NZ_AP023197.1\|WP_040234985.1\|677928_679065_+\|23S-rRNA-(guanine(1835)-N(2))-methyltransferase-RlmG	gnl\|CDD\|184963	PRK15001, PRK15001, 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG.	0
NZ_AP023197.1\|WP_000211655.1\|672398_673643_-\|serine/threonine-transporter-SstT	gnl\|CDD\|184190	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional.	0
NZ_AP023197.1\|WP_001199352.1\|670272_671760_+\|altronate-dehydratase	gnl\|CDD\|377287	pfam04295, GD_AH_C, D-galactarate dehydratase / Altronate hydrolase, C-terminus. Family members include the C termini of D-galactarate dehydratase (EC:4.2.1.42) which is thought to catalyze the reaction D-galactarate = 5-keto-4-deoxy-D-glucarate + H2O, and altronate hydrolase (altronic acid hydratase, EC:4.2.1.7), which catalyzes D-altronate = 2-keto-2-deoxygluconate + H2O. As purified, both enzymes are catalytically inactive in the absence of added Fe2+, Mn2+, and beta-mercaptoethanol. Synergistic activation of altronate hydrolase activity is seen in the presence of both iron and manganese ions, suggesting that the enzyme may have two ion binding sites. Mn2+ appears to be part of the enzyme active centre, but the function of the single bound Fe2+ ion is unknown. The hydratase has no Fe-S core.	0
NZ_AP023197.1\|WP_001297164.1\|691885_693265_-\|putrescine-aminotransferase	gnl\|CDD\|183175	PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional.	0
NZ_AP023197.1\|WP_040234984.1\|679175_681194_-\|NADPH-dependent-2,4-dienoyl-CoA-reductase	gnl\|CDD\|239240	cd02930, DCR_FMN, 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provides a hydrid ion to the C5 atom of substrate, and Tyr and His are proposed to form a catalytic dyad that protonates the C4 atom of the substrate and completes the reaction.	0
NZ_AP023197.1\|WP_000128136.1\|671842_672394_+\|YgjV-family-protein	gnl\|CDD\|378474	pfam10688, Imp-YgjV, Bacterial inner membrane protein. This is a family of inner membrane proteins. Many of the members are YgjV protein.	8.81466e-62
NZ_AP023197.1\|WP_040234987.1\|676571_677264_-\|vancomycin-high-temperature-exclusion-protein	gnl\|CDD\|225500	COG2949, SanA, Uncharacterized membrane protein [Function unknown].	1.14509e-135
NZ_AP023197.1\|WP_174402606.1\|687033_690126_-\|beta-galactosidase-subunit-alpha	gnl\|CDD\|236673	PRK10340, ebgA, cryptic beta-D-galactosidase subunit alpha; Reviewed.	0

>NZ_AP023197.1|WP_040234984.1|679175_681194_-|NADPH-dependent-2,4-dienoyl-CoA-reductase
MSYPSLFAPLDLGFTTLKNRVLMGSMHTGLEEYPDGAERLAAFYAERARHGVALIVSGGIAPDLTGVGMEGGAMLNDASQIPHHRTITEAVHQEGGKIALQILHTGRYSYQPHLVAPSALRAPINRFVPHELTHEEILQLIDDFARCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVLAVRERVGNDFIIIYRLSMLDLVEGGGTFTETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRINDPQVADDILSRGDADMVSMARPFLADAELLSKAQSGRADEINTCIGCNQACLDQIFVGKVTSCLVNPRACHETKMPILPAMQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTVTADQLQAFDETILASGIVPRVPPIDGIDHPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQIIAVDHVVICAGQEPNRTLAQPLIDSGKTVHLIGGCDVAMELDARRAIAQGTRLALEI
>NZ_AP023197.1|WP_040234985.1|677928_679065_+|23S-rRNA-(guanine(1835)-N(2))-methyltransferase-RlmG
MSHLDNGFRSLTLQRFPATDDVNPLQAWEAADEYLLQQLDDTEIRGPVLILNDAFGALSCALAEHKPYSIGDSYISELATRENLRLNGVDESSVKFLDSTADYPQQPGVVLIKVPKTLALLEQQLRALRKVVTSDTRIIAGAKARDIHTSTLELFEKVLGPTTTTLAWKKARLINCTFNEPPLADAPQTVSWKLEGTDWTIHNHANVFSRTGLDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFGNCTTIATNNKFVVLKAVKLGRRR
>NZ_AP023197.1|WP_001295542.1|677340_677844_-|M48-family-metallopeptidase
MSNLTYLQGYPEQLLSQVRTLINEQRLGDVLAKRYPGTHDYATDKALWQYTQDLKNQFLRNAPPINKVMYDNKIHVLKNALGLHTAVSRVQGGKLKAKAEIRVATVFRNAPEPFLRMIVVHELAHLKEKEHNKAFYQLCCHMEPQYHQLEFDTRLWLTQLSLGQDKI
>NZ_AP023197.1|WP_040234987.1|676571_677264_-|vancomycin-high-temperature-exclusion-protein
MLRAFARLLLRICFSRRTLKIACLLLLVAGATIFIADRVIVNASKQLTWSDVNVVPARNVGLLLGARPGNRYFTRRIDTAAELYHAGKVKWLLVSGDNGRKNYDEASGMQQALIAKGVPAKVIFCDYAGFSTLDSVVRAKKVFGENHITIISQEFHNQRAIWLAKQYGIDAIGFNAPDLNMKHGFYTQLREKLARVSAVIDAKILHRQPKYLGPSVMIGPFSEHGCPAKE
>NZ_AP023197.1|WP_001718894.1|675506_676493_-|Gfo/Idh/MocA-family-oxidoreductase
MIRFAVIGTNWITRQFVEAAHESGKYKLTAVYSRSLEQAQHFANDFSVEHLFTSLEAMAESDAIDAVYIASPNSLHFSQAQLFLSHKIHVICEKPLASNLAEVDAAIACARENQVVLFEAFKTASLPNFHLLRQALPKVGKLRKVFFNYCQYSSRYQRYLDGENPNTFNPAFSNGSIMDIGFYCLASAVALFGEPKSVQATASLLASGVDAHGVVVMDYGDFSVTLQHSKVSDSVLASEIQGEAGSLVIEKLSECQKVCFVPRGSQMQDLTQPQHINTMLYEAELFATLVDEHLVDHPGLAVSRITAKLLTEIRRQTGVIFPADSVKQ
>NZ_AP023197.1|WP_001098805.1|674258_675224_-|TerC-family-membrane-protein-Alx
MNTVGTPLLWGGFAVVVAIMLAIDLLLQGRRGAHAMTMKQAAAWSLVWVTLSLLFNAAFWWYLVQTEGRAVADPQALAFLTGYLIEKSLAVDNVFVWLMLFSYFSVPAALQRRVLVYGVLGAIVLRTIMIFTGSWLISQFDWILYIFGAFLLFTGVKMALAHEDESGIGDKPLVRWLRGHLRMTDTIDNEHFFVRKNGLLYATPLMLVLILVELSDVIFAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFLLAGVAERFSMLKYGLAVILVFIGIKMLIVDFYHIPIAVSLGVVFGILVMTFIINAWVNYRHDKQRGE
>NZ_AP023197.1|WP_139821334.1|673847_674150_-|hypothetical-protein
MASKSPKRSLEAGATRMDARRGRILQGRYLAPDPVAARDKLREPRSGDFVRQSLGVQGAAAIGRPLRAPCASDFIWHSTLKERNRSHIPNSFAHMLSNQP
>NZ_AP023197.1|WP_000211655.1|672398_673643_-|serine/threonine-transporter-SstT
MTTQRSPGLFRRLAHGSLVKQILVGLVLGILLAWISKPAAEAVGLLGTLFVGALKAVAPILVLMLVMASIANHQHGQKTNIRPILFLYLLGTFSAALAAVVFSFAFPSTLHLSSSAGDISPPSGIVEVMRGLVMSMVSNPIDALLKGNYIGILVWAIGLGFALRHGNETTKNLVNDMSNAVTFMVKLVIRFAPIGIFGLVSSTLATTGFSTLWGYAQLLVVLVGCMLLVALVVNPLLVWWKIRRNPFPLVLLCLRESGVYAFFTRSSAANIPVNMALCEKLNLDRDTYSVSIPLGATINMAGAAITITVLTLAAVNTLGIPVDLPTALLLSVVASLCACGASGVAGGSLLLIPLACNMFGISNDIAMQVVAVGFIIGVLQDSCETALNSSTDVLFTAAACQAEDDRLANSALRN
>NZ_AP023197.1|WP_000128136.1|671842_672394_+|YgjV-family-protein
MTAYWLAQGVGVIAFLIGITTFFNRDERRFKKQLSVYSAVIGVHFFLLGTYPAGASAILNAIRTLITLRTRSLWVMAIFIVLTGGIGLAKFHHPVELLPVIGTIVSTWALFRCKGLTMRCVMWFSTCCWVIHNFWAGSIGGTMIEGSFLLMNGLNIIRFWRMQKRGIDPFKVEKTPPAIDERG
>NZ_AP023197.1|WP_001199352.1|670272_671760_+|altronate-dehydratase
MQYIKIHALDNVAVALADLAEGTEVSVDNQTVRLRQDVARGHKFALTNIAKGANVIKYGLPIGYALADIAAGEHVHAHNTRTNLSDLDQYRYQPDFQDLPAQAADREVQIYRRANGDVGVRNELWILPTVGCVNGIARQIQNRFLKETNNAEGTDGVFLFSHTYGCSQLGDDHINTRTMLQNMVRHPNAGAVLVIGLGCENNQVAAFRETLGDIDPERVHFMICQQQDDEIEAGIEHLHQLYNVMRNDKREPGKLSELKFGLECGGSDGLSGITANPMLGRFSDYVIANGGTTVLTEVPEMFGAEQLLMDHCRDEATFEKLVTMVNDFKQYFIAHDQPIYENPSPGNKAGGITTLEDKSLGCTQKAGSSVVVDVLRYGERLKTPGLNLLSAPGNDAVATSALAGAGCHMVLFSTGRGTPYGGFVPTVKIATNSELAAKKKHWIDFDAGQLIHGKAMPQLLEEFIDTIVEFANGKQTCNERNDFRELAIFKSGVTL
>NZ_AP023197.1|WP_040234983.1|681519_683871_-|alpha-glucosidase
MKIKTILTPVTCALLISFSAHAANADNYKNVINRTGAPQYMKDYDYDDHQRFNPFFDLGAWHGHLLPDGPNTMGGFPGVALLTEEYINFMASNFDRLTVWQDGKKVDFTLEAYSIPGALVQKLTAKDVQVEMTLRFATPRTSLLETKIISNKPLDLVWDGELLEKLEAKEGKPLSDKTIAGEYPDYQRKISATRDGLKVTFGKVRATWDLLTSGESEYQVHKSLPVQTEINGNRFTSKAHINGSTTLYTTYSHLLTAQEVSKEQMQIRDILARPAFYLTASQQRWEEYLKKGLTNPDATPEQTRVAVKAIETLNGNWRSPGGAVKYNTVTPSVTGRWFSGNQTWPWDTWKQAFAMAHFNPDIAKENIRAVFSWQIQPGDRVRPQDVGFVPDLIAWNLSPERGGDGGNWNERNTKPSLAAWSVMEVYNVTQDKTWLAEMYPKLVAYHDWWLRNRDHNGNGVPEYGATRDKAHNTESGEMLFTVKKGNKEETQSGLNNYARVVEKGQYDSLEIPAQVAASWESGRDDAAVFGFIDKEQLDKYVASGGKRSDWTVKFAENRSQDGTLLGYSLLQESVDQASYMYSDNHYLAEMATILGKPEEAQRYRQLAQQLADYINTCMFDPTTQFYYDVRIEDKPLANGCAGKPIVERGKGPEGWSPLFNGAATQANADAVVKVMLDPKEFNTFVPLGTAALTNPAFGADIYWRGRVWVDQFWFGLKGMERYGYRDDALKLADTFFRHAKGLTADGPIQENYNPLTGAQQGAPNFSWSAAHLYMLYNDFFRKQ
>NZ_AP023197.1|WP_000767654.1|683887_684958_-|protein-YgjJ
MKLITAPCRALLALPFCYAFSAAGEEARPAEHDDTKTPAITSTSSPSFRFYGELGVGGYMDLEGENKHKYSDGTYIEGGLEMKYGSWFGLIYGEGWTVQADHDGNAWVPDHSWGGFEGGINRFYGGYRTNDGTEIMLSLRQDSSLDDLQWWGDFTPDLGYVIPNTRDIMTALKVQNLSGNFRYSVTATPAGHHDESKAWLHFGKYDRYDDKYTYPAMMNGYIQYDLAEGITWMNGLEITDGTGQLYLTGLLTPNFAARAWHHTGRADGLDVPGSESGMMVSAMYEALKGVYLSTAYTYAKHRPDHADDETTSFMQFGIWYEYGGGRFATAFDSRFYMKNASNDPSDQIFLMQYFYW
>NZ_AP023197.1|WP_001285446.1|685091_686525_-|amino-acid-permease
MSDTKRNTIGKFGLLSLTFAAVYSFNNVINNNIELGLASAPMFFLATIFYFIPFCLIIAEFVSLNKNSEAGVYAWVKSSLGGRWAFITAYTYWFVNLFFFTSLLPRVIAYASYAFLGYEYIMTPVATTIISMVLFAFSTWVSTNGAKMLGPITSVTSTLMLLLTLSYILLAGTALVGGVQPADPITVDAMIPNFNWAFLGVTTWIFMAAGGAESVAVYVNDVKGGSKSFVKVIILAGIFIGVLYSVSSVLINVFVSSKELKFTGGSVQVFHGMAAYFGLPEALMNRFVGLVSFTAMFGSLLMWTATPVKIFFSEIPEGIFGKKTVELNENGVPARAAWIQFLIVIPLMIIPMLGSNTVQDLMNTIINMTAAASMLPPLFIMLAYLNLRAKLDHLPRDFRMGSRRTGIIVVSMLIAIFAVGFVASTFPTGANILTIIFYNVGGIVIFLGFAWWKYSKYIKGLTAEERHIEATPASNVD
>NZ_AP023197.1|WP_040234981.1|686587_687037_-|beta-galactosidase-subunit-beta
MRIIDNLEQFRQIYASGKKWQRCVEAIENIDNIQPGVAHSIGDSLTYRVETDSATDALFTGHRRYFEVHYYLQGQQKIEYAPKETLQVVEYYRDETDREYLKGCGETVGVHEGQIVICDIHEAYRFICNNAVKKVVLKVTIEDGYFHNK
>NZ_AP023197.1|WP_174402606.1|687033_690126_-|beta-galactosidase-subunit-alpha
MNRWENIQLTHENRLAPRAYFFSYDSVAQARTFARETSSLFLPLSGQWNFHFFDHPLQVPEAFTSELMADWGHITVPAMWQMEGHGKLQYTDEGFPFPIDVPFVPSDNPTGAYQRIFTLSDGWQGKQTLIKFDGVETYFEVYVNGQYVGFSKGSRLTAEFDISAMVKTGDNLLCVRVMQWADSTYVEDQDMWWSAGIFRDVYLVGKHLTHINDFTVRTDFDEAYCDATLSCEVVLENLAASPVVTTLEYTLFDGERVVHSSAIDHLAIEKLTSASFAFTVEQPQQWSAESPYLYHLVMTLKDADGNVLEVVPQRVGFRDIKVRDGLFWINNRYVMLHGVNRHDNDHRKGRAVGMDRVEKDLQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRITDDPQWEKVYVERIVRHIHAQKNHPSIIIWSLGNESGYGCNIRAMYHAAKALDDTRLVHYEEDRDAEVVDIISTMYTRVPLMNEFGEYPHPKPRIICEYAHAMGNGPGGLTEYQNVFYKHDCIQGHYVWEWCDHGIQAQDDNGNVWYKFGGDYGDYPNNYNFCLDGLIYSDQTPGPGLKEYKQVIAPVKIHALDLTRGELKVENKLWFTTLDDYTLHAEVCAEGETLATQQIKLRDVAPNSEAPLQITLPQLDARETFLNITVTKDSRTRYSEAGHSIATYQFPLKENTAQPVPFAPNNARPLTLEDDRLSCTVRGYNFAITFSKMSGKPTSWQVNGESLLTREPKINFFKPMIDNHKQEYEGLWQPNHLQIMQEHLRDFAVEQSDGEVLIISRTVIAPPVFDFGMRCTYIWRIAADGQVNVALSGERYGDYPHIIPCIGFTMGINGEYDQVAYYGRGPGENYADSQQANIIDIWRSTVDAMFENYPFPQNNGNRQHVRWTALTNRHGNGLLVVPQRPINFSAWHYTQENIHASQHCNELQRSDDITLNLDHQLLGLGSNSWGSEVLDSWRVWFRDFSYGFTLLPVSGGEATAQSLASYEFGAGFFSTNLHSENKQ
>NZ_AP023197.1|WP_000212464.1|690309_691293_-|transcriptional-regulator-EbgR
MATLKDIAIEAGVSLATVSRVLNDDPTLNVKEETKHRILEIAEKLEYKTSSARKLQTGAVNQHHILAIYSYQQELEINDPYYLAIRHGIETQCEKLAIELTNCYEHSGLPDIKNVTGILIVGKPTPALRAAASALTDNICFIDFHEPGSGYDAVDIDLARISKEIIDFYINQGVNRIGFIGGEDEPGKADIREVAFAEYGRLKQVVREEDIWRGGFSSSSGYELAKQMLAREDYPKALFVASDSIAIGVLRAIHERGLNIPQDISLISVNDIPTARFTFPPLSTVRIHSEMMGSQGVNLVYEKARDGRALPLLVFVPSKLKLRGTTR
>NZ_AP023197.1|WP_000450589.1|691511_691844_+|tRNA-binding-protein
METVAYADFARLEMRVGKIVEVKRHENADKLYIVQVDVGEKTLQTVTSLVPYYSEEELMGKTVVVLCNLQKAKMRGETSECMLLCAETDDGSESVLLTPERMMPAGVRVV
>NZ_AP023197.1|WP_001297164.1|691885_693265_-|putrescine-aminotransferase
MNRLPSSASALACSAHALNLIEKRTLDHEEMKALNREVIEYFKEHVNPGFLEYRKSVTAGGDYGAVEWQAGGLNTLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQELLDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALNECKKTGDDVAAVILEPIQGEGGVILPPPGYLTAVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDMLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNEIGYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCELVIKAARKALAAMRVSVEEA
>NZ_AP023197.1|WP_040234977.1|693682_695203_+|aerotaxis-sensor-receptor-Aer
MSSHPYVTQQNTPLADDTTLMSTTDLQSYITHANDTFVQVSGYTLQELQGQPHNMVRHPDMPKAAFADMWFTLKKGEPWSGIVKNRRKNGDHYWVRANAVPMVREGKISGYMSIRTRATDEEIAAVEPLYKALNAGRTGKRIHKGLVVRKGWLGKLPSLPLRWRARGVITLMFILLAAMLWFVAAPVVTYILCALVVLLASACFEWQIVRPIENVAHQALKVATGERNSVEHLNRSDELGLTLRAVGQLGLMCRWLINDVSSQVSSVRNGSETLAKGTDELNEHTQQTVDNVQQTVATMNQMAASVKQNSATASAADKLSITASNAAVQGGEAMTTVIKTMDDIADSTQRIGTITSLINDIAFQTNILALNAAVEAARAGEQGKGFAVVAGEVRHLASRSANAANDIRKLIDASADKVQSGSQQVHAAGRTMEDIVAQVKNVTQLIAQISHSTLEQADGLSSLTRAVDELNLITQKNAELVEESAQVSAMVKHRASRLEDAVTVLH
>NZ_AP023197.1|WP_000018005.1|695250_695874_-|DNA-binding-transcriptional-regulator-NfeR
MSHHHEGCCKHEGQPRHEGCCKGEKSEHEHCGHGHQHEHGQCCGGRHGRGGGRRQRFFGHGELRLVILDILSRDDSHGYELIKAIENLTQGNYTPSPGVIYPTLDFLQEQSLITIREEEGGKKQIALTEQGAQWLEENREQVEMIEERIKARCVGAALRQNPQMKRALDNFKAVLDLRVNQSDITDAQIKKIIAVIDRAAFDITQLD

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Crispr_ID: NZ_AP023197_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP023197_2

1047491-1047946

Unclear

I-E

Consensus_repeat	Method
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

7 spacers

The CRISPR arrays of NZ_AP023197_2

>merge|NZ_AP023197|2|1047491-1047946|CRISPRCasFinder,CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCGGCCTGGCGATTTCTCGTCAGGCCTTGCGGTGTGAGTTCCCCGCGCCAGCGGGGATAAACCGTCAGTAAAGCGGCGCCCACTGATATCGGATTAGAGTTCCCCGCGCCAGCGGGGATAAACCGAGGGGCAGGGAGTGACGCTGGAGCAGGCGATCGAGTTCCCCGCGCCAGCGGGGATAAACCGGGAAATTAGGCAAATGTGAACACGGCGGCCCCGAGTTCCCCGCGCCAGCGGGGATAAACCGCCAGTATTTTGTCGTGGATTGCGGGATCACCAGAGTTCCCCGCGCCAGCGGGGATAAACCGTTGAGTTTGTTCGTAACAACGCGGGTCATCTGGAGTTCCCCGCGGCAGCGGGGATAAACCGGGTACAAAAGAGGCCCCATTCTGGCAGGGCTCAAGTTCCCCGCGCCAGTGGGGATAAACCA

>NZ_AP023197|2|2|1047491-1047946|CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GCCTGGCGATTTCTCGTCAGGCCTTGCGGTGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCAGTAAAGCGGCGCCCACTGATATCGGATTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGGGGCAGGGAGTGACGCTGGAGCAGGCGATC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGAAATTAGGCAAATGTGAACACGGCGGCCCC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGTATTTTGTCGTGGATTGCGGGATCACCA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTGAGTTTGTTCGTAACAACGCGGGTCATCTG
GAGTTCCCCGCGGCAGCGGGGATAAACCG	GGTACAAAAGAGGCCCCATTCTGGCAGGGCTC
AAGTTCCCCGCGCCAGTGGGGATAAACCA

>NZ_AP023197|2|1|1047491-1047946|CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GCCTGGCGATTTCTCGTCAGGCCTTGCGGTGT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TCAGTAAAGCGGCGCCCACTGATATCGGATTA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	AGGGGCAGGGAGTGACGCTGGAGCAGGCGATC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGAAATTAGGCAAATGTGAACACGGCGGCCCC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGTATTTTGTCGTGGATTGCGGGATCACCA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TTGAGTTTGTTCGTAACAACGCGGGTCATCTG
GAGTTCCCCGCGGCAGCGGGGATAAACCG	GGTACAAAAGAGGCCCCATTCTGGCAGGGCTC
AAGTTCCCCGCGCCAGTGGGGATAAACCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP023197.1\|WP_001071643.1\|1038634_1039426_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_AP023197.1\|WP_021557144.1\|1054016_1055426_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
NZ_AP023197.1\|WP_001362297.1\|1042736_1043639_-\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429
NZ_AP023197.1\|WP_021557145.1\|1052540_1053995_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_AP023197.1\|WP_021557148.1\|1044798_1045692_-\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429
NZ_AP023197.1\|WP_001307970.1\|1058030_1059302_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182194
NZ_AP023197.1\|WP_021557146.1\|1050089_1051367_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NZ_AP023197.1\|WP_000036723.1\|1041378_1042677_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_AP023197.1\|WP_021557149.1\|1043635_1044784_-\|TPM-domain-containing-protein	unknown	unknown	gnl\|CDD\|224429
NZ_AP023197.1\|WP_001618810.1\|1051685_1052471_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187605
NZ_AP023197.1\|WP_021557141.1\|1057779_1058040_-\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|225289
NZ_AP023197.1\|WP_021557142.1\|1056179_1057040_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
NZ_AP023197.1\|WP_021557147.1\|1048584_1050063_-\|kinase	unknown	unknown	gnl\|CDD\|212662
NZ_AP023197.1\|WP_000210878.1\|1039653_1041291_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_AP023197.1\|WP_001130266.1\|1057187_1057763_-\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865
NZ_AP023197.1\|WP_000944226.1\|1045705_1046308_-\|LemA-family-protein	unknown	unknown	gnl\|CDD\|224618
NZ_AP023197.1\|WP_000254745.1\|1038228_1038564_+\|endoribonuclease-MazF	unknown	unknown	gnl\|CDD\|182138
NZ_AP023197.1\|WP_001199973.1\|1046480_1047152_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_AP023197.1\|WP_021557143.1\|1055403_1056183_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
NZ_AP023197.1\|WP_021557150.1\|1037980_1038229_+\|type-II-toxin-antitoxin-system-antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082

Protein	Function_ID	Function_description	E-value
NZ_AP023197.1\|WP_001071643.1\|1038634_1039426_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	9.36315e-160
NZ_AP023197.1\|WP_021557144.1\|1054016_1055426_+\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.08496e-50
NZ_AP023197.1\|WP_001362297.1\|1042736_1043639_-\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	4.7875e-105
NZ_AP023197.1\|WP_021557145.1\|1052540_1053995_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	4.46795e-82
NZ_AP023197.1\|WP_021557148.1\|1044798_1045692_-\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	3.55136e-90
NZ_AP023197.1\|WP_001307970.1\|1058030_1059302_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	1.20402e-123
NZ_AP023197.1\|WP_021557146.1\|1050089_1051367_-\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	4.7563e-29
NZ_AP023197.1\|WP_000036723.1\|1041378_1042677_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_AP023197.1\|WP_021557149.1\|1043635_1044784_-\|TPM-domain-containing-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	1.42872e-63
NZ_AP023197.1\|WP_001618810.1\|1051685_1052471_+\|SDR-family-oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	3.02624e-139
NZ_AP023197.1\|WP_021557141.1\|1057779_1058040_-\|ferredoxin-family-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	7.94689e-42
NZ_AP023197.1\|WP_021557142.1\|1056179_1057040_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	3.25527e-88
NZ_AP023197.1\|WP_021557147.1\|1048584_1050063_-\|kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	6.76613e-109
NZ_AP023197.1\|WP_000210878.1\|1039653_1041291_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_AP023197.1\|WP_001130266.1\|1057187_1057763_-\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	5.83077e-88
NZ_AP023197.1\|WP_000944226.1\|1045705_1046308_-\|LemA-family-protein	gnl\|CDD\|224618	COG1704, LemA, Uncharacterized conserved protein [Function unknown].	1.21919e-77
NZ_AP023197.1\|WP_000254745.1\|1038228_1038564_+\|endoribonuclease-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	2.42227e-74
NZ_AP023197.1\|WP_001199973.1\|1046480_1047152_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.98248e-155
NZ_AP023197.1\|WP_021557143.1\|1055403_1056183_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	1.21211e-62
NZ_AP023197.1\|WP_021557150.1\|1037980_1038229_+\|type-II-toxin-antitoxin-system-antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	3.77004e-47

>NZ_AP023197.1|WP_001199973.1|1046480_1047152_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_AP023197.1|WP_000944226.1|1045705_1046308_-|LemA-family-protein
MLRIFIVIIFIFNLSGCGYNDIQTYDEQVNASWSEVLNQYQRRADLIPNLVASIKGYSSHERDVLEAVTLARSQANRASSDLQQTPGDEQKLQAWQQAQAQVTRTLGQLTIISERYPELKSQELYQNLMVQLEGSENRIAVARGRYIKAIEQYNVTIRKFPAVLTAKVMDYTPKKNYLPDDVAAVSKAPTIDFSQNANAH
>NZ_AP023197.1|WP_021557148.1|1044798_1045692_-|YgcG-family-protein
MRNFIFLMAFFCSSVFATQIPVPESPKYVNDLTGTLTNSEVNTLTNQIKALTQKNHAQLVVLVVDTTGDETIEQYATRVFDSWKPGDKDSDDGVLLLVAWQDHTVRIEIGYGLEGIITDAQSGQIIRNSIIPAFKNGDLAGGLQKGLSDIENRLAGNNLATIAPADHPLPFSGWWALLAWAIVLTFISARGYIKTLGVICFAAIVLAFVLPIAGFSGSWGVLTTLLCFATPFLAVAIAFTPFGKKVRDLMRDANQPSRHTRSNSFSHYSSSSSSSFDNDNFSGGGGSSGGGGASGRW
>NZ_AP023197.1|WP_021557149.1|1043635_1044784_-|TPM-domain-containing-protein
MRIFLLLLMLCGFQVFAERLPSVTDLTGTLTTEEQTALTQQLQTLEQQNHFQVAVLVTPTTGGKNIKLAASQRYGVYHWKPVGEKRYGEGILILVVWPEGLASMKIGHGLEQMLPPEQAAQIVRYHMQPEFEKNNLFAGLTGGIESIAQFTHIKANLSPLDALANHLFANPQRSLPCLAWTLLMIVAIVVLWRFASRPRRGIWMISMITPMVWFFSFQDDVIIRRVSIVCFSLLLATTCKQRLAVVFNLCRVFPMMLAPKNKNAKVKKQKKTPQVRESGRNSLFVVMLIIIVGWCLVFASIKDIAFISTIIGLIDHFIGPITIAGIVLLIIVAKFTGNLKLGSGEKSNRKTGNRNAHSRSSSRNSFRGGGGSSGGGGSSGRW
>NZ_AP023197.1|WP_001362297.1|1042736_1043639_-|YgcG-family-protein
MIVMRLIFILFTLWCLPGLAQQIAVPELRQQVTDITGTLSTSEQQSLTQQLQDITHKTRAQVAVLVVPSTGDDSIEQYATRVFDSWKLGDKQRNDGILLLVAWEDHAVRIEVGYGLEGVVTDLQAAKIIRDILIPAFKSDDLMGGLTLASENIGALLLNGELPEDRGDYYSINPPIPLSLAVIILLAVLSYFIVFTDPSNLPWITLTGAIYGMVFLYVAEPGPWTNLIVACGMLTPFAIVPLVIFWLIVNKKLRAKYKKLSKERASRKGSSSSSSGGGSSGGGFSGGGGSSGGGGASGRW
>NZ_AP023197.1|WP_000036723.1|1041378_1042677_+|phosphopyruvate-hydratase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_AP023197.1|WP_000210878.1|1039653_1041291_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>NZ_AP023197.1|WP_001071643.1|1038634_1039426_+|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVIDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>NZ_AP023197.1|WP_000254745.1|1038228_1038564_+|endoribonuclease-MazF
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPYTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>NZ_AP023197.1|WP_021557150.1|1037980_1038229_+|type-II-toxin-antitoxin-system-antitoxin-MazE
MIHSSVKRWGNSPAVRIPVTLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>NZ_AP023197.1|WP_021557147.1|1048584_1050063_-|kinase
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKTWAWSEDAAVMDKFNIPRHMLFDVQMPGTVLGQITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDARAQDLSPEDLLNKKASSVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDKMVRVKDIFIPIESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGELGNADSIQSWSNA
>NZ_AP023197.1|WP_021557146.1|1050089_1051367_-|MFS-transporter
MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSASLKTVIIIYSVVYILLGLLCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSVLGLLALTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGHWQDTLPAAEAYRNMWLMGMAALAMVIVFTFLLFQKIRTADSAPAMASSK
>NZ_AP023197.1|WP_001618810.1|1051685_1052471_+|SDR-family-oxidoreductase
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANVFIPSFVKDNGETKEMIEKQGVEVDFMQVDITAEGAPQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASQASNYVNGHLLVVDGGYLVR
>NZ_AP023197.1|WP_021557145.1|1052540_1053995_+|FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRIEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVNCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK
>NZ_AP023197.1|WP_021557144.1|1054016_1055426_+|MFS-transporter
MMGRCLFGFSGEKPFLLPDNEGVKMNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGVLLGAFSVVWTVGYVLASIAGHHFISESPEAWRWLLASAAMPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYFGPHVLLGDEVATATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVVACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQVTLLILAAVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>NZ_AP023197.1|WP_021557143.1|1055403_1056183_+|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNILLAFKAEPDAGMLAEKEWQAAAQGNSGPDVSLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEEAVLLETAADLRFASEFVARHIAEWQRQNPLDLIITGCQSSEGQNGQTPFLLAETLGWPCFTQVERFTLDALFITLEQRTEHGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAELPAMQCLQLARAEQRRGATLIDGQTVAEKAQKLWQDYLRQRMQP
>NZ_AP023197.1|WP_021557142.1|1056179_1057040_+|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDALVEQWQRTPANVVLFPPGTFGDELSTRLAWRLHGASICQVTSLEIPTVSVRKSHWGNALTATLQTEKRPLCLSLARQAGAAKNATLPSGMQQLNIVPGALPDWLVSIENLKNVTRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVRNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEALVTNIDADCQ
>NZ_AP023197.1|WP_001130266.1|1057187_1057763_-|glycerol-3-phosphate-responsive-antiterminator
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISNIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>NZ_AP023197.1|WP_021557141.1|1057779_1058040_-|ferredoxin-family-protein
MSVARNLWRAADAPHIVPADSVERQTAERLINACPAGLFSLTPEGDLRIDYRSCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG
>NZ_AP023197.1|WP_001307970.1|1058030_1059302_-|FAD-dependent-oxidoreductase
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERRITHESLSLLTPDGATTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGGICDDFPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLARFKTYPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALRSCVNTGISVRGMDMALTGAQAAAQTLISACQHCEPQNLFPLYHHNVERSLLWDVLQRYQHVPALLQRPGWYWAWPALMQDISRDLWDQGDKPVPPLRQLFWRHLRRHGLWHLAGDVIRSLRCL

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Crispr_ID: NZ_AP023197_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP023197_3

1073493-1074375

TypeI-E

I-E

Consensus_repeat	Method
GAGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

14 spacers

cas2,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_AP023197_3

>merge|NZ_AP023197|3|1073493-1074375|PILER-CR,CRISPRCasFinder,CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCGCATTTAATGCAAAACTAATTGCACAATAAATAGAGTTCCCCGCGCCAGCGGGGATAAACCGGCGATAAACCTCCTCATCGCTGATATCAATAAGAGTTCCCCGCGCCAGCGGGGATAAACCGATAAAGGCTCGGCGGCGCAAAAAATGGCACGGGAGTTCCCCGCGCCAGCGGGGATAAACCGCTCTCGTTGTTGTGCCTCAGTACCGGTGCGCGGAGTTCCCCGCGCCAGCGGGGATAAACCGCACACCGGTGCGACGGGAAACGTTCAGCGGCCGAGTTCCCCGCGCCAGCGGGGATAAACCGGGAATAGTTAATTTCGGTGATGGCTGCGTAAAGAGTTCCCCGCGGCAGCGGGGATAAACCGAGTAATGCTGCGTTGAGATGACCAGGCGGGCTGAGTTCCCCGCGGCAGCGGGGATAAACCGTTGACGCCAGCGGCGACCCGCGCCACGGGCTTGAGTTCCCCGCGCCAGCGGGGATAAACCGTAGCCAGACGTACTCGCAATCTGTCGGCGGTCGAGTTCCCCGCGCCAGCGGGGATAAACCACCAGTTCTCCGTATTCTGTGGTTATCGTTGCTGAGTTCCCCGCGCCAGCGGGGATAAACCGGGAGTTCAGACATAGGTGGAATGATGGACTACGAGTTCCCCGCGTTAGCGGGGATAAACCGCCCGGTAGCCAGGTTTGCAACGCCTGAACCGAGAGTTCCCCGCGCCAGCAGGGATAAACCGGCAACGACGGTGAGATTTCACGCCTGACGCTGGTGTTCCCCGCGCCAGCGGGGATAAACCGGGCGCACTGGATGCGATGATGGATATCACTGAGAATTCCCCGCCCCTGCGGTAGAACACCC

>NZ_AP023197|3|1|1073493-1074070|PILER-CR
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CATTTAATGCAAAACTAATTGCACAATAAATA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GCGATAAACCTCCTCATCGCTGATATCAATAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATAAAGGCTCGGCGGCGCAAAAAATGGCACGG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CTCTCGTTGTTGTGCCTCAGTACCGGTGCGCG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CACACCGGTGCGACGGGAAACGTTCAGCGGCC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGAATAGTTAATTTCGGTGATGGCTGCGTAAA
GAGTTCCCCGCGGCAGCGGGGATAAACCG	AGTAATGCTGCGTTGAGATGACCAGGCGGGCT
GAGTTCCCCGCGGCAGCGGGGATAAACCG	TTGACGCCAGCGGCGACCCGCGCCACGGGCTT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TAGCCAGACGTACTCGCAATCTGTCGGCGGTC
GAGTTCCCCGCGCCAGCGGGGATAAACCA

>NZ_AP023197|3|3|1073493-1074375|CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CATTTAATGCAAAACTAATTGCACAATAAATA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GCGATAAACCTCCTCATCGCTGATATCAATAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATAAAGGCTCGGCGGCGCAAAAAATGGCACGG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CTCTCGTTGTTGTGCCTCAGTACCGGTGCGCG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CACACCGGTGCGACGGGAAACGTTCAGCGGCC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGAATAGTTAATTTCGGTGATGGCTGCGTAAA
GAGTTCCCCGCGGCAGCGGGGATAAACCG	AGTAATGCTGCGTTGAGATGACCAGGCGGGCT
GAGTTCCCCGCGGCAGCGGGGATAAACCG	TTGACGCCAGCGGCGACCCGCGCCACGGGCTT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TAGCCAGACGTACTCGCAATCTGTCGGCGGTC
GAGTTCCCCGCGCCAGCGGGGATAAACCA	CCAGTTCTCCGTATTCTGTGGTTATCGTTGCT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGAGTTCAGACATAGGTGGAATGATGGACTAC
GAGTTCCCCGCGTTAGCGGGGATAAACCG	CCCGGTAGCCAGGTTTGCAACGCCTGAACCGA
GAGTTCCCCGCGCCAGCAGGGATAAACCG	GCAACGACGGTGAGATTTCACGCCTGACGCTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCGCACTGGATGCGATGATGGATATCACTGA
GAATTCCCCGCCCCTGCGGTAGAACACCC

>NZ_AP023197|3|2|1073493-1074314|CRT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CATTTAATGCAAAACTAATTGCACAATAAATA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GCGATAAACCTCCTCATCGCTGATATCAATAA
GAGTTCCCCGCGCCAGCGGGGATAAACCG	ATAAAGGCTCGGCGGCGCAAAAAATGGCACGG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CTCTCGTTGTTGTGCCTCAGTACCGGTGCGCG
GAGTTCCCCGCGCCAGCGGGGATAAACCG	CACACCGGTGCGACGGGAAACGTTCAGCGGCC
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGAATAGTTAATTTCGGTGATGGCTGCGTAAA
GAGTTCCCCGCGGCAGCGGGGATAAACCG	AGTAATGCTGCGTTGAGATGACCAGGCGGGCT
GAGTTCCCCGCGGCAGCGGGGATAAACCG	TTGACGCCAGCGGCGACCCGCGCCACGGGCTT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	TAGCCAGACGTACTCGCAATCTGTCGGCGGTC
GAGTTCCCCGCGCCAGCGGGGATAAACCA	CCAGTTCTCCGTATTCTGTGGTTATCGTTGCT
GAGTTCCCCGCGCCAGCGGGGATAAACCG	GGAGTTCAGACATAGGTGGAATGATGGACTAC
GAGTTCCCCGCGTTAGCGGGGATAAACCG	CCCGGTAGCCAGGTTTGCAACGCCTGAACCGA
GAGTTCCCCGCGCCAGCAGGGATAAACCG	GCAACGACGGTGAGATTTCACGCCTGACGCTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP023197.1\|WP_001173673.1\|1078021_1078627_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_AP023197.1\|WP_000517476.1\|1079193_1079505_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_AP023197.1\|WP_021557140.1\|1060060_1061860_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_AP023197.1\|WP_021557138.1\|1064737_1067404_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
NZ_AP023197.1\|WP_021557137.1\|1067818_1069327_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|236613
NZ_AP023197.1\|WP_000281400.1\|1071569_1072169_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
NZ_AP023197.1\|WP_001295182.1\|1081739_1082501_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_AP023197.1\|WP_021557139.1\|1061859_1063572_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
NZ_AP023197.1\|WP_001334996.1\|1070908_1071583_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|273842
NZ_AP023197.1\|WP_000752798.1\|1069319_1069802_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|187801
NZ_AP023197.1\|WP_021557136.1\|1069814_1070906_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_AP023197.1\|WP_000372390.1\|1075684_1076593_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_AP023197.1\|WP_001416755.1\|1073102_1073387_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_AP023197.1\|WP_000246138.1\|1079523_1080234_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_AP023197.1\|WP_001246103.1\|1078676_1079000_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_AP023197.1\|WP_021557132.1\|1076594_1078022_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_AP023197.1\|WP_000490429.1\|1074395_1075433_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_AP023197.1\|WP_000039862.1\|1063645_1064380_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_AP023197.1\|WP_001219242.1\|1080233_1080713_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_AP023197.1\|WP_000568924.1\|1080709_1081759_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884

Protein	Function_ID	Function_description	E-value
NZ_AP023197.1\|WP_001173673.1\|1078021_1078627_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148
NZ_AP023197.1\|WP_000517476.1\|1079193_1079505_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
NZ_AP023197.1\|WP_021557140.1\|1060060_1061860_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_AP023197.1\|WP_021557138.1\|1064737_1067404_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	0
NZ_AP023197.1\|WP_021557137.1\|1067818_1069327_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|236613	PRK09693, PRK09693, Cascade antiviral complex protein; Validated.	0
NZ_AP023197.1\|WP_000281400.1\|1071569_1072169_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.81669e-101
NZ_AP023197.1\|WP_001295182.1\|1081739_1082501_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
NZ_AP023197.1\|WP_021557139.1\|1061859_1063572_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
NZ_AP023197.1\|WP_001334996.1\|1070908_1071583_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|273842	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is part of the ECOLI subtype CRISPR/Cas locus, and now characterized as part of the CASCADE complex of that system. It shares a small N-terminal homology region with members of several other CRISPR/Cas subtypes, and we view the families that share this region as being Cas5.	2.15381e-103
NZ_AP023197.1\|WP_000752798.1\|1069319_1069802_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187801	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.51297e-33
NZ_AP023197.1\|WP_021557136.1\|1069814_1070906_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	7.66212e-153
NZ_AP023197.1\|WP_000372390.1\|1075684_1076593_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_AP023197.1\|WP_001416755.1\|1073102_1073387_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.46262e-62
NZ_AP023197.1\|WP_000246138.1\|1079523_1080234_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	3.26939e-121
NZ_AP023197.1\|WP_001246103.1\|1078676_1079000_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	3.44794e-52
NZ_AP023197.1\|WP_021557132.1\|1076594_1078022_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_AP023197.1\|WP_000490429.1\|1074395_1075433_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_AP023197.1\|WP_000039862.1\|1063645_1064380_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	3.61111e-137
NZ_AP023197.1\|WP_001219242.1\|1080233_1080713_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.56248e-104
NZ_AP023197.1\|WP_000568924.1\|1080709_1081759_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0

>NZ_AP023197.1|WP_001416755.1|1073102_1073387_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMLVVVTENVPPRLRGRLAIWLLEVRAGVYVGDVSAKIREMIWEQIAGLAEEGNVVMAWATNTESGFEFQTFGVNRRTPVDLDGLRLVSFLPV
>NZ_AP023197.1|WP_000281400.1|1071569_1072169_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSKVIIARAWSRDLYQLHQGLWHLFPNRPDAARDFLFHVEKRNTPEGCHVLLQSAQMPVSTAVATVIKTKQVEFQLQVGVPLYFRLRANPIKTILDNQKRLDSKGNIKRCRVPLIKEAEQIAWLQRKLGNAARVEDVHPISERPQYFSGDGKSGKIQTVCFEGVLTINDAPALIDLVQQGIGPAKSMGCGLLSLAPL
>NZ_AP023197.1|WP_001334996.1|1070908_1071583_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MRSYLILRLAGPMQAWGQPTFEGTRPTGRFPTRSGLLGLLGACLGIQRDDTSSLQALSESVQFAVRCDELILDDRRVSVTGLRDYHTVLGAREDYRGLKSHETIQTWREYLCDASFTVALWLTPHATMVISELEKAVLKPRYTPYLGRRSCPLTHPLFLGTCQASDPQKALLNYEPVGGDIYSEESVTGHHLKFTARDEPMITLPRQFASREWYVIKGGMDVSQ
>NZ_AP023197.1|WP_021557136.1|1069814_1070906_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MSNFINIHVLISHSPSCLNRDDMNMQKDAIFGGKRRVRISSQSLKRAMRKSDYYAQNIGESSLRTIHLAQLRDVLRQKLGERFDQKIIDKTLALLSGKSVDEAEKISADAVTPWVVGEIAWFCEQVAKAEADNLDDKKLLKVLKEDIAAIRVNLQQGVDIALSGRMATSGMMSELGKVDGAMSIAHAITTHQVDSDIDWFTAVDDLQEQGSAHLGTQEFSSGVFYRYANINLAQLQENLGGASREQALEIATHVVHMLATEVPGAKQRTYAAFNPADMVMVNFSDMPLSMANAFEKAVKAKDGFLQPSIQAFNQYWDRVANGYGLNGAAAQFSLSDVDPITAQVKQMPTLEQLKSWVRNNGEA
>NZ_AP023197.1|WP_000752798.1|1069319_1069802_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MADEIDAMALYRAWQQLDNGACAQIRRVSEPDELRDIPAFYRLVQPFGWENPRHQQALLRMVFCLSAGKNVIRHQDKKPEQTTGISLGRALANSGRINERRIFQLIRADRTADMVQLRRLLTHAEPVLDWPLMARMLTWWGKRERQQLLEDFVLTTNKNA
>NZ_AP023197.1|WP_021557137.1|1067818_1069327_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNLLIDNWIPVRPRNGGKVQIINLQSLYCSRDQWRLSLPRDDMELAALALLVCIGQIIDPAKDDVEFRHRIMNPFTEDGFQQLIAPWIDMFYLNHAEHPFMQTKGVKANDVTPMEKLLAGVSGATNCAFVNQPGQGEALCGGCTAIALFNQANQAPGFGGGFKSGLRGGTPITTFVRGIDLRSTVLLNVLTIPRLQKQFPNESHTENQPTWVKPVKPNESVPASSIGFVRGLFWQPAHIELCDPIGIGKCSCCGQESNLRYTGFLKEKFTFTVNGLWPHPHSPCLVTVKKGEVEEKFLAFTTSAPSWTQISRVVVDKIIQNENGNRVAAVVNQFRNIAPQSPLELIMGGYRNNQASILERRHDVLMFNQGWQQYGNVINEIVTVGLGYKTALRKALYTFAEGFKNKDFKGAGVSVHETAERHFYRQSELLIPDVLANINFSQADEVIADLRDKLHQLCEMLFNQSVAPYAHHPKLINTLALARATLYKHLRELKPQGGPSNG
>NZ_AP023197.1|WP_021557138.1|1064737_1067404_+|CRISPR-associated-helicase/endonuclease-Cas3
MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWDQSVVLQNTFCRNEMLSKQRVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSPGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTDTFLFKEDAPSGIQALRTYFQDRQQDACRVLALSGLVSNKRRYDGVHALLDNGYQPRQLQVLVDALPTAPGLTVIEAPTGSGKTETALAYAWKLIDQQLAESVIFALPTQATANAMLSRMEANASRLFTSPNLILAHGNSRFNHLFQSIKSRAFTEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPVENNSAYPLINWRGVNGAQRFDLPAHPEQLPPRFSIQPEPIYLADMLPDLTMLERMIAAANAGAQVCLICNLVDVAQLCFQRLKELNDTQVDIDLFHARFTLNDRREKENRVISNFGKNGERNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEIPLATVLLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVIKGMDKFESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYVQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRSFSEVVDEDGLLWLEGRQNQDGWIWQGNSIVITYTRDEGMTRVIPANPK
>NZ_AP023197.1|WP_000039862.1|1063645_1064380_+|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAQLEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_AP023197.1|WP_021557139.1|1061859_1063572_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLTDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITKPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD
>NZ_AP023197.1|WP_021557140.1|1060060_1061860_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTQVPPSALLPLNPEQLARLQAATTDLTPTQLAWVSGYFWGVLNQQPAALAATPAPAAEMPGITIISASQTGNARRVAEALRDDLLAEKLNVKLVNAGDYKFKQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDSSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDALKSRAPVAAPSQSVATGAVNEIHTSPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDETVTVDGKTLTLREALQWHFELTVNTANIVENYATLTRSETLLPLVGDKAKLQHYAATTPIVDMVRFSPAQLDAEALINLLRPLTPRLYSIASSQAEVESEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADEAPGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY
>NZ_AP023197.1|WP_000490429.1|1074395_1075433_-|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSVEATNWNLGNKDGYQQRAKTPAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>NZ_AP023197.1|WP_000372390.1|1075684_1076593_+|sulfate-adenylyltransferase-subunit-CysD
MDQKRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFIHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NZ_AP023197.1|WP_021557132.1|1076594_1078022_+|sulfate-adenylyltransferase-subunit-CysN
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEETFTRIREDYLTFAEQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDVQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGDK
>NZ_AP023197.1|WP_001173673.1|1078021_1078627_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>NZ_AP023197.1|WP_001246103.1|1078676_1079000_+|DUF3561-family-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLMTVGIMFGALFMWLLG
>NZ_AP023197.1|WP_000517476.1|1079193_1079505_+|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>NZ_AP023197.1|WP_000246138.1|1079523_1080234_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>NZ_AP023197.1|WP_001219242.1|1080233_1080713_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>NZ_AP023197.1|WP_000568924.1|1080709_1081759_+|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGALRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELAELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>NZ_AP023197.1|WP_001295182.1|1081739_1082501_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW

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Crispr_ID: NZ_AP023197_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP023197_4

1572629-1572755

Orphan

Consensus_repeat	Method
GCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP023197_4

>merge|NZ_AP023197|4|1572629-1572755|CRISPRCasFinder
GCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAATTCGAGCCGTAGGCCGGATAAGGCGTTCACGCTGCATCCGGCACCCGGAGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAA

>NZ_AP023197|4|4|1572629-1572755|CRISPRCasFinder
GCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAA	TTCGAGCCGTAGGCCGGATAAGGCGTTCACGCTGCATCCGGCACCCGGA
GCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP023197.1\|WP_000948724.1\|1563986_1565345_+\|glycerol-3-phosphate-transporter	unknown	unknown	gnl\|CDD\|236889
NZ_AP023197.1\|WP_021557000.1\|1565349_1566426_+\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|236859
NZ_AP023197.1\|WP_000301028.1\|1570484_1571135_+\|lipopolysaccharide-kinase-InaA	unknown	unknown	gnl\|CDD\|182136
NZ_AP023197.1\|WP_001225836.1\|1591807_1592584_+\|YfaP-family-protein	unknown	unknown	gnl\|CDD\|227021
NZ_AP023197.1\|WP_000990765.1\|1579661_1580384_-\|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase	unknown	unknown	gnl\|CDD\|235350
NZ_AP023197.1\|WP_000176738.1\|1568183_1569062_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176102
NZ_AP023197.1\|WP_021556995.1\|1584991_1585615_+\|DUF1175-domain-containing-protein	unknown	unknown	gnl\|CDD\|225774
NZ_AP023197.1\|WP_001075172.1\|1572805_1575091_-\|ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|181649
NZ_AP023197.1\|WP_021556999.1\|1566649_1567720_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP023197.1\|WP_001209931.1\|1560836_1562096_-\|glycerol-3-phosphate-dehydrogenase-subunit-GlpB	unknown	unknown	gnl\|CDD\|225617
NZ_AP023197.1\|WP_001104493.1\|1590153_1591803_+\|DUF2300-domain-containing-protein	unknown	unknown	gnl\|CDD\|227732
NZ_AP023197.1\|WP_000660231.1\|1569213_1570404_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341042
NZ_AP023197.1\|WP_174402619.1\|1575786_1579521_+\|AIDA-I-family-autotransporter-adhesin-YfaL/EhaC	unknown	unknown	gnl\|CDD\|182059
NZ_AP023197.1\|WP_174402618.1\|1571442_1572573_-\|ribonucleotide-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|181647
NZ_AP023197.1\|WP_001281225.1\|1580530_1583158_+\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A	unknown	unknown	gnl\|CDD\|235502
NZ_AP023197.1\|WP_021556996.1\|1583306_1584995_+\|DUF2138-domain-containing-protein	unknown	unknown	gnl\|CDD\|227030
NZ_AP023197.1\|WP_021557001.1\|1562085_1563714_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	unknown	unknown	gnl\|CDD\|236847
NZ_AP023197.1\|WP_000135039.1\|1571188_1571443_-\|ferredoxin-like-diferric-tyrosyl-radical-cofactor-maintenance-protein-YfaE	unknown	unknown	gnl\|CDD\|182668
NZ_AP023197.1\|WP_021556994.1\|1585758_1590153_+\|alpha-2-macroglobulin-family-protein	unknown	unknown	gnl\|CDD\|225248
NZ_AP023197.1\|WP_000876014.1\|1592858_1595708_+\|two-component-system-sensor-histidine-kinase-RcsC	unknown	unknown	gnl\|CDD\|182772

Protein	Function_ID	Function_description	E-value
NZ_AP023197.1\|WP_000948724.1\|1563986_1565345_+\|glycerol-3-phosphate-transporter	gnl\|CDD\|236889	PRK11273, glpT, glycerol-3-phosphate transporter.	0
NZ_AP023197.1\|WP_021557000.1\|1565349_1566426_+\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|236859	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional.	0
NZ_AP023197.1\|WP_000301028.1\|1570484_1571135_+\|lipopolysaccharide-kinase-InaA	gnl\|CDD\|182136	PRK09902, PRK09902, lipopolysaccharide kinase InaA.	4.41923e-159
NZ_AP023197.1\|WP_001225836.1\|1591807_1592584_+\|YfaP-family-protein	gnl\|CDD\|227021	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown].	1.27651e-152
NZ_AP023197.1\|WP_000990765.1\|1579661_1580384_-\|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase	gnl\|CDD\|235350	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG.	1.65303e-171
NZ_AP023197.1\|WP_000176738.1\|1568183_1569062_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176102	cd05466, PBP2_LTTR_substrate, The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily. This model and hierarchy represent the the substrate-binding domain of the LysR-type transcriptional regulators that form the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, oxidative stress responses, nodule formation of nitrogen-fixing bacteria, synthesis of virulence factors, toxin production, attachment and secretion, to name a few. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the substrate-binding domains from ionotropic glutamate receptors, LysR-like transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	1.9401e-45
NZ_AP023197.1\|WP_021556995.1\|1584991_1585615_+\|DUF1175-domain-containing-protein	gnl\|CDD\|225774	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown].	3.26469e-140
NZ_AP023197.1\|WP_001075172.1\|1572805_1575091_-\|ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|181649	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha.	0
NZ_AP023197.1\|WP_001209931.1\|1560836_1562096_-\|glycerol-3-phosphate-dehydrogenase-subunit-GlpB	gnl\|CDD\|225617	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism].	0
NZ_AP023197.1\|WP_001104493.1\|1590153_1591803_+\|DUF2300-domain-containing-protein	gnl\|CDD\|227732	COG5445, COG5445, Predicted secreted protein [Function unknown].	7.07801e-127
NZ_AP023197.1\|WP_000660231.1\|1569213_1570404_+\|MFS-transporter	gnl\|CDD\|341042	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli membrane proteins, YfcJ and YhhS, Bacillus subtilis uncharacterized MFS-type transporter YwoG, and similar proteins. YfcJ and YhhS are putative arabinose efflux transporters. YhhS has been implicated glyphosate resistance. YfcJ-like arabinose efflux transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.20553e-100
NZ_AP023197.1\|WP_174402619.1\|1575786_1579521_+\|AIDA-I-family-autotransporter-adhesin-YfaL/EhaC	gnl\|CDD\|182059	PRK09752, PRK09752, AIDA-I family autotransporter YfaL.	0
NZ_AP023197.1\|WP_174402618.1\|1571442_1572573_-\|ribonucleotide-diphosphate-reductase-subunit-beta	gnl\|CDD\|181647	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed.	0
NZ_AP023197.1\|WP_001281225.1\|1580530_1583158_+\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
NZ_AP023197.1\|WP_021556996.1\|1583306_1584995_+\|DUF2138-domain-containing-protein	gnl\|CDD\|227030	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_AP023197.1\|WP_021557001.1\|1562085_1563714_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	gnl\|CDD\|236847	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A.	0
NZ_AP023197.1\|WP_000135039.1\|1571188_1571443_-\|ferredoxin-like-diferric-tyrosyl-radical-cofactor-maintenance-protein-YfaE	gnl\|CDD\|182668	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein.	1.23742e-52
NZ_AP023197.1\|WP_021556994.1\|1585758_1590153_+\|alpha-2-macroglobulin-family-protein	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	0
NZ_AP023197.1\|WP_000876014.1\|1592858_1595708_+\|two-component-system-sensor-histidine-kinase-RcsC	gnl\|CDD\|182772	PRK10841, PRK10841, two-component system sensor histidine kinase RcsC.	0

>NZ_AP023197.1|WP_174402618.1|1571442_1572573_-|ribonucleotide-diphosphate-reductase-subunit-beta
MAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLHLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDAEVDTDDLSNFQL
>NZ_AP023197.1|WP_000135039.1|1571188_1571443_-|ferredoxin-like-diferric-tyrosyl-radical-cofactor-maintenance-protein-YfaE
MARVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAKGDIEIEL
>NZ_AP023197.1|WP_000301028.1|1570484_1571135_+|lipopolysaccharide-kinase-InaA
MAVSAKHDEFNHWWATEGDWVEEPNYRRNGMSGVQCVERNGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALLVTEDMAGFISIADWYAQHAVTPYSDEVRQAMLKAVALAFKKMHSVNRQHGCCYVRHIYVKTEGKAEAGFLDLEKSRRRLRRDKAINHDFRQLEKYLEPIPKADWEQVKAYYYAM
>NZ_AP023197.1|WP_000660231.1|1569213_1570404_+|MFS-transporter
MKEKLWTKDFWAITIISFIIFFVFYVLLTLLPIYISDRLHASPDKAGLLVTLFLIAAIVIRPFAGQWVGKYSNKTILVLSSLAFLVVTALYPFCHSIESLLFIRVLHGITFGVITTVKGTISARLIPASRRGEGISFFSLAMGLAMVVGPWIGLNMARWEAFNMAFWLCTGVAAVGIILSLIMTVPPVISHADGSKPKMGFAAMFDRAALPFAMVTFFMTFSYAGVSAFLALYARELNLMSAASNFLLCYAIFLMICRTFTGNVCDKKGPKYVVYPCLLFFTVGLVVLGYTQGSVMMVVSGALIGIGYGSVTPVFQTQIISSVEPHKIGVANSLFFNAMDAGLALGACVMGMMVAHTGYRMIYLLGALLVVVAGGVYALQMKGKSGVALVVAKEIH
>NZ_AP023197.1|WP_000176738.1|1568183_1569062_-|LysR-family-transcriptional-regulator
MTLTQINSLLAVLDYGGFTEASKRLFMTQSAVSQAIAALEQELGVNILLRDRRKAIQLTTAGHRIVQHLRAINREVNAVKEIAEQEKQNPQRTLRLGCFPSVCACILPVVIRYFEIHHPNIKIIPFEENSTAIIDSLQNESIDAGFVHFPVSGMYSVPIYQDKFTVVLPPNHALAKNSTITVEELMGEPLIISKGRYELSIMALFKEKNITPQIKYEFNHPDTAISFIRQGLGIALLPELTLKTIADELCSVPLEPTFYRQISLLAKEKPVEGSPLFLLQMCTEQLVVSGKI
>NZ_AP023197.1|WP_021556999.1|1566649_1567720_-|hypothetical-protein
MPNTSIHLSRCNILQNNKLQPAEIYKESQQTAKLEFFCDEFLKISQSRYGLSTSTDSIANLLAFFTKASDAIDSIKTQKIDVHSYGFVPIRHFVEHVITYKNEFAADYEPYTLTFTRGENNEGILSVESKEGFISQRTINLNEYETAINIINEHVIKENIHNTVQSPTEKDISKINSSDKPYKTSSKESIKSQLYSDQKNIQTCYYILRKNTEWYKYASSEERYDKFKNSSKEIKNTYKQIVQAQKKLNQMKYINKLSGELIDITDKKLAPLINDSFSYTRDFFAYSKQEKNIFTFDNSKFVDPKEKEGLMVQHSNGKLVITGKYCPEGVQTAFTQEQYDKLIRYINIFFTFPKLE
>NZ_AP023197.1|WP_021557000.1|1565349_1566426_+|glycerophosphodiester-phosphodiesterase
MKLTLKNLSMAIMMSTIVMGSSAMAADSNEKIVIAHRGASGYLPEHTLPAKAMAYAQGADYLEQDLVMTKDDHLVVLHDHYLDRVTDVADRFPDRARKDGRYYAIDFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRVHTFEEEIEFVQGLNHSTGKNIGIYPEIKAPWFHHQEEKDIAAKTLEVLKKYGYTGKDDKVYLQCFDADELKRIKNELEPKMGMDLNLVQLIAYTDWNETQQKQPDGSWVNYNYDWMFKPGAMKQVAEYADGIGPDYHMLIEETSQPGNIKLTGMVQDAQQNKLVVHPYTVRSDKLPEYTTDVNQLYDVLYNKAGVNGLFTDFPDKAVKFLNKE
>NZ_AP023197.1|WP_000948724.1|1563986_1565345_+|glycerol-3-phosphate-transporter
MLSIFKPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFFYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHQELLQKRNGG
>NZ_AP023197.1|WP_021557001.1|1562085_1563714_-|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A
MKTRDSQSSDVIIIGGGATGAGIARDCALRGLRVILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVEPTNGLFITLPEDDISFQATFIRACEEAGISAEAIDPQQARIIEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGAVILTAHEVTGLIREGATVCGVHVRNHLTGETQSLHAPVVVNAAGIWGQHIAEYADLRIRMFPAKGSLLIMDHRINQHVINRCRKPSDADILVPGDTISLIGTTSLRIDYNEIDDNRVTAEEVDILLREGEKLAPVMAQTRILRAYSGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGGKLMTYRLMAEWATDAVCRKLGNTRPCTTADLALPGSQEPAEVTLRKVISLPAPLRGSAVYRHGDRTPAWLSEGRLHRSLVCECEAVTAGEVQYAVENLNVNSLLDLRRRTRVGMGTCQGELCACRAAGLLQRFNVTTSAQSIEQLSTFLNERWKGVQPIAWGDALRESEFTRWVYQGLCGLEKEQKDAL
>NZ_AP023197.1|WP_001209931.1|1560836_1562096_-|glycerol-3-phosphate-dehydrogenase-subunit-GlpB
MRFDTVIMGGGLAGLLCGLQLQKHGLRCAIVTRGQSALHFSSGSLDLLSHLPDGQPVTDIHSGLESLRQQAPAHPYSLLGPQRVLDLACQAQALIAESGAQLQGSVELAHQRITPLGTLRSTWLSSPEVPVWPLPAKKICVVGISGLMDFQAHLAAASLRELGLAVETAEIELPELDVLRNNATEFRAVNIARFLDNEENWPLLLDALIPVANTCEMILMPACFGLADDKLWRWLNEKLPCSLMLLPTLPPSVLGIRLQNQLQRQFVRQGGVWMPGDEVKKVTCKNGVVNEIWTRNHADIPLRPRFAVLASGSFFSGGLVAERNGIREPILGLDVLQTATRGEWYKGDFFAPQPWQQFGVTTDQTLRPSQAGQTIENLFAIGSVLGGFDPIAQGCGGGVCAVSALHAAQQIAQRAGGQQ
>NZ_AP023197.1|WP_001075172.1|1572805_1575091_-|ribonucleoside-diphosphate-reductase-subunit-alpha
MNQNLLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPALYDHVVKMVEMGKYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDTIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDGAEDAQDDLVPSIQDDGCESGACKI
>NZ_AP023197.1|WP_174402619.1|1575786_1579521_+|AIDA-I-family-autotransporter-adhesin-YfaL/EhaC
MRIIFLRKEYLSLLPSMIASLFSANGVAAAIDLCQGYDIKASCHASRQSLSGITQVWSIADGQWLVFSDMTNNASGGAVFLQQGAEFTLSPENETGMTLFANNTVSGEYNNGGAIFAKENSTLNLTDVIFSGNVAGGYGGAIYSSGTNDTGAIDLRVTNAVFRNNIANDGKGGAIYTINNDIYLSNDVFNNNQAYTSTSYSDGDGGAIDVTDNNSDSKHPSGYTIINNTAFTNNTAEGYGGAIYTNSATAPYLIDISVDDSYSQNGGVLVDENNSAAGYGDGPSSAAGGFMYLGLSEVTFDIADGKTLVIGNTENDGAVDSIAGTGLITKTGSGDLVLNADNNDFTGEMQIENGEVILGRSNSLMNVGDTHCQDDPQDCYGLTIGSIDKYQNQAELNVGSTQQTFVHSLTGFQNGTLNIDAGGNVTVNEGSFAGTIEGAGQLTIAQNGSYVLAGASSMALTGDIVVDAGAVLSLEGDAADLAALQDDPQSIVLNGGVLDLSDFSTWQSGTSYKDGLEVSGSSGTVIGSQDVVDLAGGNDMHIGGDGKDGVYVVIDAGDGQVRLANDNQYLGTTQIASGTLMVSDNSQLGDTHYNRQVIFTDNQQESVMEITANVDTRSTTTEHGRDIEMRADGEVAVDAGVDTQWGALMADSSGQHQDEGSTLTKTGAGTLELTASGTTQSAVRVEEGTLQGDVADIFPYASSLWVGDGATFVTGADQDIQSIDATSSGTIDISNGTVLRLTGQDTSVDLDASLFNGDGTLVNATDGVTLTGELNTNLETDSLTYLSDVTVNGNLTNTTGAVSLQNGVAGYTLTVNGDYTGGGTLLFDSELNGDDSASDQLVLNGNTAGNTTVVVNSITGIGEPTSTGIKVVDFAADPTQFQNNAQFSLAGSGYVNMGAYDYTLVEDNNDWYLRSQEVTPPSPPDPDPDPTPDPDPTPDPIPAYQPVLNAKVGGYLNNLRAANQAFMMERRDHAGGDGQTLNLRVIGGDYHYTAAGQLAQHEDTSTVQLSGDLFRGRWGTDGEWMLGIVGGYSDNQGDSRSSMTGTRADNQNHGYAVGLTSSWFQHGNQKQGAWLDNWLQYAWFSNDVSEHEDGVDHYHSSGIIASLEAGYQWLPGRGVVIEPQAQVIYQGVQQDDFTAANRARVSQSQGDDIQTRLGLHSEWRTAVHVIPTLDLNYYHDPHSTEIEEDGSTISDDAVKQRGEIKVGVTGNISQRVSLRGSVAWQKGSDDFAQTAGFLSMTVKW
>NZ_AP023197.1|WP_000990765.1|1579661_1580384_-|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase
MNAEKSPVNHNVDHEEIAKFEAVASRWWDLEGEFKPLHRINPLRLGYIAERAGGLFGKKVLDVGCGGGILAESMAREGATVTGLDMGFEPLQVAKLHALESGIQVDYVQETVEEHAAKHAGQYDVVTCMEMLEHVPDPQSVVRACAQLVKPGGDVFFSTLNRNGKSWLMAVVGAEYILRMVPKGTHDVKKFIKPAELLGWVDQTSLKERHITGLHYNPITNTFKLGPGVDVNYMLHTQNK
>NZ_AP023197.1|WP_001281225.1|1580530_1583158_+|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A
MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDLAVYNTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEPEEE
>NZ_AP023197.1|WP_021556996.1|1583306_1584995_+|DUF2138-domain-containing-protein
MSGEKKAKGWRFYGLVGFGAIALLSAGVWALQYAGSGPEKTLSPLVVHNNLQIDLNEPDLFLDSDSLSQLPKDLLTIPFLHDVLSEDFVFYYQNHVDRLGIEGSIRRIVYEHDLTLKDKLFSSLLDQPAQAALWHDKQGHLSHYMVLIQRSGLSKLLEPLLFAATSDSQLSKTEISSIKLNNETIPVYQLRYNGNNALMFATYQDKMVVFSSTDMLFKDDQQDTEATAIASDLLSGKKRWETSFGLEERTTGKTPVRQRIVVSANLLGFGYQRLMPSFAGVRFEMGNDGWHSFLALNDESASVDASFDFTPVWNSMPAGATFCVAVPYSHGIAEEMLSHISQENDKLNGALDGAAGLCWYEDSKLQTPLFVGQFDGTAEQAQLPGKLFTQNIGAHESKAPEGVLPVSQTQQGEAQIWRREVSSRYGQYPKAQAAQPDQLMSDYFFRVSLAMQNKTLLFSLDDTLVNNALQTLNKTRPAMVDVIPTDGIVPLYINPQGVAKLLRNETLTSLPKNLEPVFYNAAQTLLMPKLDALSQQPRYVMKLAQMEPGAAWQWLTITWQPL
>NZ_AP023197.1|WP_021556995.1|1584991_1585615_+|DUF1175-domain-containing-protein
MRHGLLALICWLCCVVAHSEMLNVEQSGQFRAWFVRIAQEQLRQGPSPRWYQQDCAGLVRFAANETLKVHDSKWLKSNGLSSQYLPPEMTLTPEQRQLAQNWNQGNGKTGPYVTAINLIQYNSQFIGQDINQALPGDMIFFDQGDAQHLMVWMGRYVIYHTGSATKTDNGMRAVSLQQLMTWKDTRWIPNDSNPNFIGIYRLNFLAR
>NZ_AP023197.1|WP_021556994.1|1585758_1590153_+|alpha-2-macroglobulin-family-protein
MRLEAPGRDYRRYQMEEYGGVDVRLYRIPDPMAFLRQQKNLHRIVVQPQYLGDGLNNTLTWLWDNWYGKSRRVMQRTFSSQSRQNVTQALPELQLGNAIIKPSRYVQNNQFSPLKKYPLVEQFRYPLWQAKPVEPQQGVKLEGASSNFISPQPGNIYIPLGQQEPGLYLVEAMVGGYRATTVVFVSDTVALSKVSGKELLVWTAGKKQGEAKPGSEILWTDGLGVMTRGVTDDSGTLQLQHISPERSYILGKDAEGGVFVSENFFYESEIYNTRLYIFTDRPLYRAGDRVDVKVMGREFHDPLHSSPIVSAPAKLSVLDANGSLLQTVDVTLDARNGGQGSFRLPENAVAGGYELRLAYRNQVYSSSFRVANYIKPHFEIGLALDKKEFKTGEAVSGKLQLLYPDGEPVKDARVQLSLRAQQLSMVGNDLRYAGRFPVSLEGSETVSDDSGHVALNLPAADKPSRYLLTVSASDGAAYRVTTTKEILIERGLAHYSLSTAAQYSNSGESVVFRYAALESSKQVPVTYEWLRLEDRTSHSGELPSGGKSFTVNFAKPGNYNLTLRDKDGLILAGLSHAVSGKGSMSHTGTVDIVADKTLYQPGETAKMLITFPEPIDEALLTLERDRVEQQSLLSHPANWLTLQRLNDTQYEARVSVSNSFAPNITFSVLYTRNGQYSFQNAGIKVAVPQLDIRVKTDKTHYQPGELVNVELTSSLKGKPVSAQLTVGVVDEMIYALQPEIAPNIGKFFYPLGRNNVRTSSSLSFISYDQALSSEPVAPGATNRSERRVKMLERPRREEVDTAAWMPSLTTDKQGKAYFTFLMPDSLTRWRITARGMNGDGLVGQGRAYLRSEKNLYMKWSMPTVYRVGDKPAAGLFIFSQQDNEPVALVTKFAGAEMRQTLTLHKGANYISLTQNIQQSGLLSAELQQNGQVQDSISTKLSFVDNSWPVEQQKNVMLGGGDNALMLPEQASNIRLQSSETPQEIFRNNLDALVDEPWGGVINTGSRLIPLSLAWRSLADHQSAAANDIRQMIQDNRLRLMQLAGPGARFTWWGEDGNGDAFLTAWAWYADWQASQALGVTQQPEYWQHMLDSYAEQADNMPLLHRALVLAWAQEMNLPCKTLLKGLDEAIARRGTKTEDFSEEDPRDINDSLILDTPESPLADAVANVLTMTLLKKAQLKSTVMPQVQQYAWDKAANSNQPLAHTVVLLNSGGDATQAAAILSGLTAEQSTIERALAMNWLAKYMATIPSVVLPAPAGAWAKHKLTGGGEYWRWVGQGVPDILSFGDELSPQNVQVRWREAAKTAQQSNIPVTVERQLYRLIPGEEEMSFTLQPVTSNEIDSDALYLDEITLTSEQDAVLRYGQVEVPLPPGADVERTTWGISVNKPNAAKQQGQLLEKARNEMGELAYMVPVKELTGTVTFRHLLRFSQKGQFVLPPARYVRSYAPAQQSVAAGSEWPGMQVK
>NZ_AP023197.1|WP_001104493.1|1590153_1591803_+|DUF2300-domain-containing-protein
MNWRRIVWLLALVTLPTLAEETPLQLALRGAQHDQLYQLSSSGVTKASTLPDSLTTPLGSLWKLYVYAWLEDTHQPEQPYQCRGNSPEEVYCCQAGESITRDTALVRSCGLYFAPQRLHIGADVWGQYWQQRQAPAWLASLTTLKPETSVTVKSLLDSLATLPAQNKAQEVLLDVVLDEAKIGVASMLGSRVRVKTWSWFADDKQEIRQGGFAGWLTDGTPLWVTGSGTSKTVLTRYATVLNRVLPVPTQVASGQCVEVELFARYPLKKITAEKSTTAVKPGVLNGRYRVTFTNGNHITFVSHGETTLLNEKGKLKLQSHLDREEYVARVLDREAKSTPPEAAKAMTVAIRTFLQQNANREGDCLTIPDSSATQRVSASPATTGARTMTAWTQDLIYAGDPVHYHGSRATEGTLSWRQAMAQAGQGDRYDQILAFAYPDNSLSRWGAPRSTCQLLPKAKAWLAKKMPQWRRILQGETGYNEPDVFAVCRLVSGFPYTDRQQKRLFIRNFFTLQDRLDLTHEYLHLAFDGYPTGLDENYIETLTRQLLMD
>NZ_AP023197.1|WP_001225836.1|1591807_1592584_+|YfaP-family-protein
MRKIFLPLLLVALSPVAHSEGVQEVEIDAPLSGWHPAEGEDASFSQSINYPASSVNMADDQNISAQIHGKIKNYAAAGKVQQGRLVVNGASMPQRIESDGSFARPYIFTEGSNSVQVISPDGQSRQKMQFYSTPGTGTIRARLRLVLSWDTDNTDLDLHVVTPDGEHAWYGNTVLKNSGALDMDVTTGYGPEIFAMPAPVHGRYQVYINYYGGRSETELTTAQLTLITDEGSVNEKQETFIVPMRNAGELTLVKSFDW
>NZ_AP023197.1|WP_000876014.1|1592858_1595708_+|two-component-system-sensor-histidine-kinase-RcsC
MKYLASFRTTLKASRYMFRALALVLWLLIAFSSVFYIVNALHQRESEIRQEFNLSSDQAQRFIQRTSDVMKELKYIAENRLSAENGVLSPRGRETQADVPAFEPLFADSDCSAMSNTWRGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGLRDMPVERDTALKALHERINKYRNAPQDDSGSNLYWISEGPRPGVGYFYALTPVYLANRLQALLGVEQTIRMENFFLPGTLPMGVTILDENGHTLISLTGPESKIKGDPRWMQERSWFGYTEGFRELVLKKNLPPSSLSIVYSVPVDKVLERIRMLILNAILLNVLAGAALFTLARMYERRIFIPAESDALRLEEHEQFNRKIVASAPVGICILRTADGVNILSNELAHTYLNMLTHEDRQRLTQIICGQQVNFVDVLTSNNTNLQISFVHSRYRNENVAICVLVDVSSRVKMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVDRLVTAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLGLYCFIEPDVPVALNGDPMRLQQVISNLLSNAIKFTDTGCIVLHVRADGDYLSIRVRDTGVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGSQFTVRIPLYGAQYPQKKGVEGLSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEGQEPTPEDVLITDEVVSKKWQGRAVVTFCRRHIGIPLEKAPGEWVHSVAAPHELPALLARIYLIEMESDDPANALPSTDKAVSDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTVYAERVRKSRES

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Crispr_ID: NZ_AP023197_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP023197_5

1978000-1978145

Orphan

Consensus_repeat	Method
AGAGATAGCGAACCGTAGGTCAGATAAGGCGCTCGCGCCGCATCCGACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP023197_5

>merge|NZ_AP023197|5|1978000-1978145|CRISPRCasFinder
AGAGATAGCGAACCGTAGGTCAGATAAGGCGCTCGCGCCGCATCCGACATTGGCAGTGTGCCTGATGCGACGCTGTTCGCGTCTTACCAGGCCTACCAGAGATAGCGAACCGTAGGTCGGATAAGGCGCTCGCGCCGCATCCGACA

>NZ_AP023197|5|5|1978000-1978145|CRISPRCasFinder
AGAGATAGCGAACCGTAGGTCAGATAAGGCGCTCGCGCCGCATCCGACA	TTGGCAGTGTGCCTGATGCGACGCTGTTCGCGTCTTACCAGGCCTACC
AGAGATAGCGAACCGTAGGTCGGATAAGGCGCTCGCGCCGCATCCGACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP023197.1\|WP_174402635.1\|1987758_1989570_+\|phosphogluconate-dehydratase	unknown	unknown	gnl\|CDD\|181628
NZ_AP023197.1\|WP_000448393.1\|1982169_1983141_+\|lauroyl-Kdo(2)-lipid-IV(A)-myristoyltransferase	unknown	unknown	gnl\|CDD\|236355
NZ_AP023197.1\|WP_000202996.1\|1978945_1979701_-\|zinc-ABC-transporter-ATP-binding-protein-ZnuC	unknown	unknown	gnl\|CDD\|181939
NZ_AP023197.1\|WP_032154078.1\|1973633_1974086_+\|dihydroneopterin-triphosphate-diphosphatase	unknown	unknown	gnl\|CDD\|236516
NZ_AP023197.1\|WP_000571478.1\|1978163_1978949_-\|zinc-ABC-transporter-permease-subunit-ZnuB	unknown	unknown	gnl\|CDD\|181938
NZ_AP023197.1\|WP_001295503.1\|1974889_1975411_+\|crossover-junction-endodeoxyribonuclease-RuvC	unknown	unknown	gnl\|CDD\|129331
NZ_AP023197.1\|WP_040235277.1\|1979779_1980712_+\|zinc-ABC-transporter-substrate-binding-protein-ZnuA	unknown	unknown	gnl\|CDD\|236558
NZ_AP023197.1\|WP_010723105.1\|1976085_1976151_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP023197.1\|WP_174402634.1\|1970867_1971434_-\|hydrolase	unknown	unknown	gnl\|CDD\|183137
NZ_AP023197.1\|WP_001184045.1\|1980727_1982050_+\|murein-DD-endopeptidase-MepM	unknown	unknown	gnl\|CDD\|236946
NZ_AP023197.1\|WP_001024929.1\|1975412_1976015_-\|YebB-family-permuted-papain-like-enzyme	unknown	unknown	gnl\|CDD\|183152
NZ_AP023197.1\|WP_000568519.1\|1976909_1977920_+\|Holliday-junction-branch-migration-DNA-helicase-RuvB	unknown	unknown	gnl\|CDD\|234619
NZ_AP023197.1\|WP_001258660.1\|1971743_1973516_+\|aspartate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234775
NZ_AP023197.1\|WP_000907234.1\|1974114_1974855_+\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|234640
NZ_AP023197.1\|WP_000639274.1\|1970052_1970871_-\|DUF72-domain-containing-protein	unknown	unknown	gnl\|CDD\|182366
NZ_AP023197.1\|WP_000800512.1\|1989606_1990248_+\|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase	unknown	unknown	gnl\|CDD\|235577
NZ_AP023197.1\|WP_000091148.1\|1983271_1984714_-\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|235619
NZ_AP023197.1\|WP_001056694.1\|1984841_1985711_-\|DNA-binding-transcriptional-regulator-HexR	unknown	unknown	gnl\|CDD\|183082
NZ_AP023197.1\|WP_000301720.1\|1986048_1987524_+\|glucose-6-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|235579
NZ_AP023197.1\|WP_000580323.1\|1976289_1976901_+\|Holliday-junction-branch-migration-protein-RuvA	unknown	unknown	gnl\|CDD\|234645

Protein	Function_ID	Function_description	E-value
NZ_AP023197.1\|WP_174402635.1\|1987758_1989570_+\|phosphogluconate-dehydratase	gnl\|CDD\|181628	PRK09054, PRK09054, phosphogluconate dehydratase; Validated.	0
NZ_AP023197.1\|WP_000448393.1\|1982169_1983141_+\|lauroyl-Kdo(2)-lipid-IV(A)-myristoyltransferase	gnl\|CDD\|236355	PRK08943, PRK08943, lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated.	0
NZ_AP023197.1\|WP_000800512.1\|1989606_1990248_+\|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase	gnl\|CDD\|235577	PRK05718, PRK05718, keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional.	4.22426e-135
NZ_AP023197.1\|WP_032154078.1\|1973633_1974086_+\|dihydroneopterin-triphosphate-diphosphatase	gnl\|CDD\|236516	PRK09438, nudB, dihydroneopterin triphosphate pyrophosphatase; Provisional.	7.75418e-99
NZ_AP023197.1\|WP_000571478.1\|1978163_1978949_-\|zinc-ABC-transporter-permease-subunit-ZnuB	gnl\|CDD\|181938	PRK09543, znuB, zinc ABC transporter permease subunit ZnuB.	6.10269e-164
NZ_AP023197.1\|WP_000202996.1\|1978945_1979701_-\|zinc-ABC-transporter-ATP-binding-protein-ZnuC	gnl\|CDD\|181939	PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.	0
NZ_AP023197.1\|WP_040235277.1\|1979779_1980712_+\|zinc-ABC-transporter-substrate-binding-protein-ZnuA	gnl\|CDD\|236558	PRK09545, znuA, zinc ABC transporter substrate-binding protein ZnuA.	0
NZ_AP023197.1\|WP_000301720.1\|1986048_1987524_+\|glucose-6-phosphate-dehydrogenase	gnl\|CDD\|235579	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated.	0
NZ_AP023197.1\|WP_174402634.1\|1970867_1971434_-\|hydrolase	gnl\|CDD\|183137	PRK11440, PRK11440, putative hydrolase; Provisional.	5.13094e-136
NZ_AP023197.1\|WP_001184045.1\|1980727_1982050_+\|murein-DD-endopeptidase-MepM	gnl\|CDD\|236946	PRK11649, PRK11649, putative peptidase; Provisional.	0
NZ_AP023197.1\|WP_001024929.1\|1975412_1976015_-\|YebB-family-permuted-papain-like-enzyme	gnl\|CDD\|183152	PRK11470, PRK11470, YebB family permuted papain-like enzyme.	3.78414e-136
NZ_AP023197.1\|WP_000568519.1\|1976909_1977920_+\|Holliday-junction-branch-migration-DNA-helicase-RuvB	gnl\|CDD\|234619	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB.	0
NZ_AP023197.1\|WP_001258660.1\|1971743_1973516_+\|aspartate--tRNA-ligase	gnl\|CDD\|234775	PRK00476, aspS, aspartyl-tRNA synthetase; Validated.	0
NZ_AP023197.1\|WP_000907234.1\|1974114_1974855_+\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|234640	PRK00110, PRK00110, YebC/PmpR family DNA-binding transcriptional regulator.	4.59796e-164
NZ_AP023197.1\|WP_000639274.1\|1970052_1970871_-\|DUF72-domain-containing-protein	gnl\|CDD\|182366	PRK10302, PRK10302, hypothetical protein; Provisional.	0
NZ_AP023197.1\|WP_001295503.1\|1974889_1975411_+\|crossover-junction-endodeoxyribonuclease-RuvC	gnl\|CDD\|129331	TIGR00228, Crossover_junction_endodeoxyribonuclease_RuvC, crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC. [DNA metabolism, DNA replication, recombination, and repair].	1.05967e-94
NZ_AP023197.1\|WP_000091148.1\|1983271_1984714_-\|pyruvate-kinase	gnl\|CDD\|235619	PRK05826, PRK05826, pyruvate kinase; Provisional.	0
NZ_AP023197.1\|WP_001056694.1\|1984841_1985711_-\|DNA-binding-transcriptional-regulator-HexR	gnl\|CDD\|183082	PRK11302, PRK11302, DNA-binding transcriptional regulator HexR; Provisional.	0
NZ_AP023197.1\|WP_000580323.1\|1976289_1976901_+\|Holliday-junction-branch-migration-protein-RuvA	gnl\|CDD\|234645	PRK00116, ruvA, Holliday junction branch migration protein RuvA.	7.87495e-104

>NZ_AP023197.1|WP_000568519.1|1976909_1977920_+|Holliday-junction-branch-migration-DNA-helicase-RuvB
MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATTRAWNHFGITPPEMP
>NZ_AP023197.1|WP_000580323.1|1976289_1976901_+|Holliday-junction-branch-migration-protein-RuvA
MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRMVSKIARPDASSETLIREALRAAL
>NZ_AP023197.1|WP_010723105.1|1976085_1976151_+|hypothetical-protein
MYIFITHFFTEYVILKYLLPI
>NZ_AP023197.1|WP_001024929.1|1975412_1976015_-|YebB-family-permuted-papain-like-enzyme
MNINYPAEYEIGDIVFTCIGAALFGQISAASNCWSNHVGIIIGHNGEDFLVAESRVPLSTITTLSRFIKRSSNQRYAIKRLDAGLTEQQKQRIVEQVPSRLRKLYHTGFKYESSRQFCSKFVFDIYKEALCIPVGEIETFGELLNSNPNAKLTFWKFWFLGSIPWERKTVTPASLWHHPGLVLIHAEGVETPQPELTEAV
>NZ_AP023197.1|WP_001295503.1|1974889_1975411_+|crossover-junction-endodeoxyribonuclease-RuvC
MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSESRLNLARGRLR
>NZ_AP023197.1|WP_000907234.1|1974114_1974855_+|YebC/PmpR-family-DNA-binding-transcriptional-regulator
MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAIDKALSNNMTRDTLNRAIARGVGGDDDANMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKCGGNLGTDGSVAYLFSKKGVISFEKGDEDTIMEAALEAGAEDVVTYDDGAIDVYTAWEEMGKVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVYHNGEISDEVAATL
>NZ_AP023197.1|WP_032154078.1|1973633_1974086_+|dihydroneopterin-triphosphate-diphosphatase
MKDKVYKRPVSILVIIYAQDTKRVLMLQRRDDPDFWQSVTGSVEEGETAPQAAMREVKEEVTIDVVAEQLTLIDCQRTVEFEIFSHLRHRYAPGVTRNTESWFCLALPHERQIVFTEHLAYKWLDAPAAAALTKSWSNRQAIEQFVINAA
>NZ_AP023197.1|WP_001258660.1|1971743_1973516_+|aspartate--tRNA-ligase
MRTEYCGQLRLSHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGIVQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKNINRDMATGEIEVLASSLTIINRADVLPLDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVDLGDFPVMTFAEAERRYGSDKPDLRNPMELTDVADLLKSVEFAVFAGPANDPKGRVAALRVPGGASLTRKQIDEYGNFVKIYGAKGLAYIKVNERAKGLEGINSPVAKFLNAEIIEAILDRTAAQDGDMIFFGADNKKIVADAMGALRLKVGKDLGLTDESKWAPLWVIDFPMFEDDGEGGLTAMHHPFTSPKDMTAAELKAAPENAVANAYDMVINGYEVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKTTAAACLMTEAPSFANPAALAELSIQVVKKAENN
>NZ_AP023197.1|WP_174402634.1|1970867_1971434_-|hydrolase
MLELNAKTTALVVIDLQEGILPFAGGPHTADEVVNRAGKLAAKFRASGQPVFLVRVGWSADYAEALKQPVDAPSPAKVLPENWWQHPAALGATDSDIEIIKRQWGAFYGTDLELQLRRRGIDTIVLCGISTNIGVESTARNAWELGFNLVIAEDACSAARAEQHNNSINHIYPRIARVRSVEEILHAL
>NZ_AP023197.1|WP_000639274.1|1970052_1970871_-|DUF72-domain-containing-protein
MIYIGLPQWSHPKWVRLGITSLEEYARHFNCVEGNTTLYALPKPEVVLRWREQTTDDFRFCFKFPATISHQAALRHCDDLVTEFLTRMSPLAPRIGQYWLQLPATFGPRELPALWHFLDSLPGEFNYGVEVRHPQFFAKGEEEQTLNRGLHQRGVNRVILDSRPVHAARPHSEAIRDAQRKKPKVPVHAVLTATNPLIRFIGSDDMTQNRELFQVWLQKLAQWHQTTTPYLFLHTPDIAQAPELVHTLWEDLRKTLPEIGAVPAIPQQSSLF
>NZ_AP023197.1|WP_000571478.1|1978163_1978949_-|zinc-ABC-transporter-permease-subunit-ZnuB
MIELLFPGWLAGIMLACAAGPLGSFVVWRRMSYFGDTLAHASLLGVAFGLLLDVNPFYAVIAVTLLLAGGLVWLEKRPQLAIDTLLGIMAHSALSLGLVVVSLMSNIRVDLMAYLFGDLLAVTPEDLISIAIGVVIVVAILFWQWRNLLSMTISPDLAFVDGVKLQRVKLLLMLVTALTIGVAMKFVGALIITSLLIIPAATARRFARTPEQMAGVAVLVGMVAVTGGLTFSAFYDTPAGPSVVLCAALLFIISMMKKQAS
>NZ_AP023197.1|WP_000202996.1|1978945_1979701_-|zinc-ABC-transporter-ATP-binding-protein-ZnuC
MTSLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVTPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTHKEDILPALKRVQAGHLINAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCGVLMVSHDLHLVMAKTDEVLCLNHHICCSGTPEVVSLHPEFISMFGPRGAEQLGIYRHHHNHRHDLQGRIVLRRGNDRS
>NZ_AP023197.1|WP_040235277.1|1979779_1980712_+|zinc-ABC-transporter-substrate-binding-protein-ZnuA
MLHKKTLLFAALSAALWGGATQAADAAVVASLKPVGFIASAIADGVTETEVLLPDGASEHDYSLRPSDVKRLQNADLVVWVGPDMEAFMQKPVSKLPEAKQVTIAQLEDVKPLLMKSIHGDDDDHDHAEKSDEDHHHGDFNMHLWLSPEIARATAVAIHGKLVELMPQSRAKLDANLKDFEAQLASTETQVGNELAPLKGKGYFVFHDAYGYFEKQFGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQFRPAVVESVARGTSVRMGTLDPLGTNIKLGKTSYSEFLSQLANQYASCLKGD
>NZ_AP023197.1|WP_001184045.1|1980727_1982050_+|murein-DD-endopeptidase-MepM
MQQIARSVALAFNNLPRPHRVMLGSLTVLTLAVAVWRPYVYHRDATPIVKTIELEQNEIRSLLPEASEPIDQAAQEDEAIPQDELDDKIAGEAGVHEYVVSTGDTLSSILNQYGIDMGDITQLAAADKELRNLKIGQQLSWTLTADGELQRLTWEVSRRETRTYDRTAANGFKMTSEMQQGEWVNNLLKGTVGGSFVASARNAGLTSAEVSAVIKAMQWQMDFRKLKKGDEFAVLMSREMLDGKREQSQLLGVRLRSEGKDYYAIRAEDGKFYDRNGTGLAKGFLRFPTAKQFRISSNFNPRRTNPVTGRVAPHRGVDFAMPQGTPVLSVGDGEVVVAKRSGAAGYYVAIRHGRSYTTRYMHLRKILVKPGQKVKRGDRIALSGNTGRSTGPHLHYEVWINQQAVNPLTAKLPRTEGLTGSDRREFLAQAKEIVPQLRFD
>NZ_AP023197.1|WP_000448393.1|1982169_1983141_+|lauroyl-Kdo(2)-lipid-IV(A)-myristoyltransferase
METKKNNSEYIPEFDKSFRHPRYWGAWLGVAAMAGIALTPPKFRDPILAWLGRFAGRLGKSSRRRALINLSLCFPERSEAEREAIVDEMFATAPQAMAMMAELAIRGPEKIQPRVDWQGLEIIEEMRRNNEKVIFLVPHGWAVDIPAMLMASQGQKMAAMFHNQGNPVFDYVWNTVRRRFGGRLHARNDGIKPFIQSVRQGYWGYYLPDQDHGPEHSEFVDFFATYKATLPAIGRLMKVCRARVVPLFPIYDGKTHRLTIQVRPPMDDLLEADDHTIARRMNEEVEIFVGPRPEQYTWILKLLKTRKPGEIQPYKRKDLYPIK
>NZ_AP023197.1|WP_000091148.1|1983271_1984714_-|pyruvate-kinase
MSRRLRRTKIVTTLGPATDRDNNLEKVIAAGANVVRMNFSHGSPEDHKMRADKVREIAAKLGRHVAILGDLQGPKIRVSTFKEGKVFLNIGDKFLLDANLGKGEGDKEKVGIDYKGLPADVVPGDILLLDDGRVQLKVLEVQGMKVFTEVTVGGPLSNNKGINKLGGGLSAEALTEKDKADIKTAALIGVDYLAVSFPRCGEDLNYARRLARDAGCDAKIVAKVERAEAVCSQDAMDDIILASDVVMVARGDLGVEIGDPELVGIQKALIRRARQLNRAVITATQMMESMITNPMPTRAEVMDVANAVLDGTDAVMLSAETAAGQYPSETVAAMARVCLGAEKIPSINVSKHRLDVQFDNVEEAIAMSAMYAANHLKGVTAIITMTESGRTALMTSRISSGLPIFAMSRHERTLNLTALYRGVTPVHFDSANDGVAAASEAVNLLRDKGYLMSGDLVIVTQGDVMSTVGSTNTTRILTVE
>NZ_AP023197.1|WP_001056694.1|1984841_1985711_-|DNA-binding-transcriptional-regulator-HexR
MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAALALEANVSEPTVNRFCRSMDTRGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNLSDDR
>NZ_AP023197.1|WP_000301720.1|1986048_1987524_+|glucose-6-phosphate-dehydrogenase
MAVTQTAQACDLVIFGAKGDLARRKLLPSLYQLEKAGQLNPDTRIIGVGRADWDKAAYTKVVREALETFMKETIDEGLWDTLSARLDFCNLDVNDTAAFNRLGAMLDQKNRITINYFAMPPSTFGAICKGLGEAKLNAKPARVVMEKPLGTSLATSQEINDQVGEYFEECQVYRIDHYLGKETVLNLLALRFANSLFVNNWDNRTIDHVEITVAEEVGIEGRWGYFDKAGQMRDMIQNHLLQILCMIAMSPPSDLSADSIRDEKVKVLKSLRRIDRSNVREKTVRGQYTAGFAQGKKVPGYLEEEGANKSSNTETFVAIRVDIDNWRWAGVPFYLRTGKRLPTKCSEVVVYFKTPELNLFKESWQDLPQNKLTIRLQPDEGVDIQVLNKVPGLDHKHNLQITKLDLSYSETFNQTHLADAYERLLLETMRGIQALFVRRDEVEEAWKWVDSITEAWAMDNDAPKPYQAGTWGPVASVAMITRDGRSWNEFE
>NZ_AP023197.1|WP_174402635.1|1987758_1989570_+|phosphogluconate-dehydratase
MNPQLLRVTNRIIERSRETRSAYLARIEQAKTSTVHRSQLACGNLAHGFAACQPEDKASLKSMLRNNIAIITSYNDMLSAHQPYEHYPEIIRKALHEANAVGQVAGGVPAMCDGVTQGQVGMELSLLSREVIAMSAAVGLSHNMFDGALFLGVCDKIVPGLTMAALSFGHLPAVFVPSGPMASGLPNKEKVRIRQLYAEGKVDRMALLESEAASYHAPGTCTFYGTANTNQMVVEFMGMQLPGSSFVHPDSPLRDALTAAAARQVTRMTGNGNEWMPIGKMIDEKVVVNGIVALLATGGSTNHTMHLVAMARAAGIQINWDDFSDLSDVVPLMARLYPNGPADINHFQAAGGVPVLVRELLKAGLLHEDVNTVAGFGLSRYTLEPWLNNGELDWREGAEKSLDSNVIASFEQPFSHHGGTKVLSGNLGRAVMKTSAVPVENQVIEAPAVVFESQHDVMPAFEAGLLDRDCVVVVRHQGPKANGMPELHKLMPPLGVLLDRCFKIALVTDGRLSGASGKVPSAIHVTPEAYDGGLLAKVRDGDIIRVNGQTGELTLLVDEAELAAREPHIPDLSASRVGTGRELFSALREKLSGAEQGATCITF
>NZ_AP023197.1|WP_000800512.1|1989606_1990248_+|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase
MKNWKTSAESILTTGPVVPVIVVKKLEHAVPMAKALVAGGVRVLEVTLRTECAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISPGLTEPLLKAATEGTIPLIPGISTVSELMLGMDYGLKEFKFFPAEANGGVKALQAIAGPFSQVRFCPTGGISPANYRDYLALKSVLCIGGSWLVPADALEAGDYDRITKLAREAVEGAKL

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Crispr_ID: NZ_AP023197_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP023197_6

2208984-2209107

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP023197_6

>merge|NZ_AP023197|6|2208984-2209107|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>NZ_AP023197|6|6|2208984-2209107|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP023197.1\|WP_021556848.1\|2209421_2210678_+\|AIDA-repeat-containing-protein	unknown	unknown	gnl\|CDD\|137602
NZ_AP023197.1\|WP_000212657.1\|2208543_2208849_-\|monooxygenase	unknown	unknown	gnl\|CDD\|182975
NZ_AP023197.1\|WP_001174943.1\|2210718_2212092_-\|multidrug-efflux-MATE-transporter-MdtK	unknown	unknown	gnl\|CDD\|234981
NZ_AP023197.1\|WP_021556851.1\|2205200_2205986_+\|thiosulfate-reductase-cytochrome-B-subunit	unknown	unknown	gnl\|CDD\|184968
NZ_AP023197.1\|WP_021556847.1\|2218258_2219428_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_AP023197.1\|WP_000528342.1\|2200406_2200616_+\|fumarate-hydratase-FumD	unknown	unknown	gnl\|CDD\|182359
NZ_AP023197.1\|WP_000493947.1\|2212306_2212948_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846
NZ_AP023197.1\|WP_000190982.1\|2216679_2217705_-\|HTH-type-transcriptional-repressor-PurR	unknown	unknown	gnl\|CDD\|236739
NZ_AP023197.1\|WP_001070230.1\|2201071_2201698_+\|ferredoxin-like-protein	unknown	unknown	gnl\|CDD\|182135
NZ_AP023197.1\|WP_021556852.1\|2203833_2204472_+\|YdhW-family-putative-oxidoreductase-system-protein	unknown	unknown	gnl\|CDD\|182160
NZ_AP023197.1\|WP_000007283.1\|2219573_2220155_-\|superoxide-dismutase-[Fe]	unknown	unknown	gnl\|CDD\|182534
NZ_AP023197.1\|WP_001182346.1\|2214426_2215638_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182924
NZ_AP023197.1\|WP_000269493.1\|2215750_2216683_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
NZ_AP023197.1\|WP_021556849.1\|2206813_2208418_-\|FAD-NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|182134
NZ_AP023197.1\|WP_001273527.1\|2201718_2203821_+\|aldehyde-ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|236629
NZ_AP023197.1\|WP_024181999.1\|2205989_2206802_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182159
NZ_AP023197.1\|WP_000098896.1\|2212987_2214136_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
NZ_AP023197.1\|WP_001349911.1\|2204535_2205204_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|274451
NZ_AP023197.1\|WP_001295403.1\|2198437_2199850_-\|pyruvate-kinase-PykF	unknown	unknown	gnl\|CDD\|181699
NZ_AP023197.1\|WP_000102278.1\|2218003_2218093_+\|stress-response-protein-YnhF	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_AP023197.1\|WP_021556848.1\|2209421_2210678_+\|AIDA-repeat-containing-protein	gnl\|CDD\|137602	PRK09945, PRK09945, hypothetical protein; Provisional.	0
NZ_AP023197.1\|WP_000212657.1\|2208543_2208849_-\|monooxygenase	gnl\|CDD\|182975	PRK11118, PRK11118, putative monooxygenase; Provisional.	1.12003e-64
NZ_AP023197.1\|WP_001174943.1\|2210718_2212092_-\|multidrug-efflux-MATE-transporter-MdtK	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
NZ_AP023197.1\|WP_021556851.1\|2205200_2205986_+\|thiosulfate-reductase-cytochrome-B-subunit	gnl\|CDD\|184968	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional.	3.36794e-163
NZ_AP023197.1\|WP_021556847.1\|2218258_2219428_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	3.78801e-97
NZ_AP023197.1\|WP_000528342.1\|2200406_2200616_+\|fumarate-hydratase-FumD	gnl\|CDD\|182359	PRK10292, PRK10292, fumarate hydratase FumD.	2.11502e-34
NZ_AP023197.1\|WP_000493947.1\|2212306_2212948_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	2.24506e-123
NZ_AP023197.1\|WP_000190982.1\|2216679_2217705_-\|HTH-type-transcriptional-repressor-PurR	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
NZ_AP023197.1\|WP_001070230.1\|2201071_2201698_+\|ferredoxin-like-protein	gnl\|CDD\|182135	PRK09898, PRK09898, ferredoxin-like protein.	6.99609e-140
NZ_AP023197.1\|WP_021556852.1\|2203833_2204472_+\|YdhW-family-putative-oxidoreductase-system-protein	gnl\|CDD\|182160	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein.	1.27308e-119
NZ_AP023197.1\|WP_000007283.1\|2219573_2220155_-\|superoxide-dismutase-[Fe]	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	3.77321e-138
NZ_AP023197.1\|WP_001182346.1\|2214426_2215638_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
NZ_AP023197.1\|WP_000269493.1\|2215750_2216683_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
NZ_AP023197.1\|WP_021556849.1\|2206813_2208418_-\|FAD-NAD(P)-binding-protein	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
NZ_AP023197.1\|WP_001273527.1\|2201718_2203821_+\|aldehyde-ferredoxin-oxidoreductase	gnl\|CDD\|236629	PRK09849, PRK09849, putative oxidoreductase; Provisional.	0
NZ_AP023197.1\|WP_024181999.1\|2205989_2206802_+\|hypothetical-protein	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	5.5408e-175
NZ_AP023197.1\|WP_000098896.1\|2212987_2214136_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
NZ_AP023197.1\|WP_001349911.1\|2204535_2205204_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	7.32003e-76
NZ_AP023197.1\|WP_001295403.1\|2198437_2199850_-\|pyruvate-kinase-PykF	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0

>NZ_AP023197.1|WP_000212657.1|2208543_2208849_-|monooxygenase
MATLLQLHFAFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA
>NZ_AP023197.1|WP_021556849.1|2206813_2208418_-|FAD-NAD(P)-binding-protein
MKKIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEASHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARKQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAMIATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFHRDNASEKLNITLMSRTGILPEADFYCPIPYEPLHIVTDQALNAEIQKGEYGLLDRVFRLIVEEIKFADPDWSQRIALESLNVDSFAQAWFAERKQRDPFDWAEKNLQEVEHNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYKMEINESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFPGLREQLQKTGDEIPDVGEDYTLQQPEDIRGRVAFGALPWLMHDQPFVQGLTACAEIGEAMARAVVKPASRARRRLSFD
>NZ_AP023197.1|WP_024181999.1|2205989_2206802_+|hypothetical-protein
MIITRADLREWRIGAVMYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGEIPFCSQFARSDDHARIGCCEDNVRIATAGYAVQIASMGYSVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRIANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGENSTVVSTGVVDSIILGPGGSAALAYHDGERVRFAVAIEGENNIRAGVRYRLNEQHQFVEC
>NZ_AP023197.1|WP_021556851.1|2205200_2205986_+|thiosulfate-reductase-cytochrome-B-subunit
MNPSQHAEQFQSQLANYVPQFTPEFWPVWLIIAGVLLVGMWLVLGLHALLRARGVKKSATDHGERIYLYSKAVRLWHWSNALLFVLLLASGLINHFALVGATAVKSLVAVHEVCGFLLLACWLGFVLINAVGGNGHHYRIRRQGWLERAAKQTRFYLFGIMQGEEHPFPATSQSKFNPLQQIAYIGVMYGLLPLLLLTGLLCLYPQAVGDVFPGVRYWLLQAHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH
>NZ_AP023197.1|WP_001349911.1|2204535_2205204_+|4Fe-4S-dicluster-domain-containing-protein
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGREDSPEIQAWLQDNKYYQYQLPGAGKPHLYRRFGQHLIKKENV
>NZ_AP023197.1|WP_021556852.1|2203833_2204472_+|YdhW-family-putative-oxidoreductase-system-protein
MNHRDELPLAKVSEVDEAKRQWLQGMRHPVDMVTEPEPAEILAEFIRQHSAAGQLVARAVFLSPPYSVAEEELSVLLESIKQNGDYADIACMTGSQDDYYYSTQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEAAIAAMDVAPEYADIRQVESSTAVLYLFSERFMTYGKAYGLCEWFEVEQFQNP
>NZ_AP023197.1|WP_001273527.1|2201718_2203821_+|aldehyde-ferredoxin-oxidoreductase
MANGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKIMYDEVPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQMKFAGYDVIIIEGKAKSPVWLKIKDDKVSLEKADFLWGKGTRATTEEICRLTSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKRLNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPPGNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPSTGGNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYSKGVFKRVLPAEEYAEIRWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWNLGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEEMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRNEHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGCPTRETLQRLGLEDIAADLAAHNLLPA
>NZ_AP023197.1|WP_001070230.1|2201071_2201698_+|ferredoxin-like-protein
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV
>NZ_AP023197.1|WP_000528342.1|2200406_2200616_+|fumarate-hydratase-FumD
MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAMETVINALVK
>NZ_AP023197.1|WP_001295403.1|2198437_2199850_-|pyruvate-kinase-PykF
MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL
>NZ_AP023197.1|WP_021556848.1|2209421_2210678_+|AIDA-repeat-containing-protein
MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDKGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPGGEASNCEINQGGVFMLAGKASDTLLAGGTMNNLGGEDSDTIVENGAIYRLGTDGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGADLQQSTITVQQGGVLILDGSTVKGDGVTFSIGNINLNGGKLWLITGAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIRVEITDASRQTLCNALKLQPDEDGIGATLQPA
>NZ_AP023197.1|WP_001174943.1|2210718_2212092_-|multidrug-efflux-MATE-transporter-MdtK
MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRMPSAIILQRASR
>NZ_AP023197.1|WP_000493947.1|2212306_2212948_+|riboflavin-synthase
MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA
>NZ_AP023197.1|WP_000098896.1|2212987_2214136_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIAGARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTILLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR
>NZ_AP023197.1|WP_001182346.1|2214426_2215638_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLLWGPLSDRYGRKPVLLIGLTIFALGSLGMLWVENAAMLLVLRFVQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWLKPTTKARNNSQDGLTFTDLLRSKTYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLVLFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEVGCQNHGNAEVAHSESH
>NZ_AP023197.1|WP_000269493.1|2215750_2216683_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRLVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALELENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLREPEETPATGD
>NZ_AP023197.1|WP_000190982.1|2216679_2217705_-|HTH-type-transcriptional-repressor-PurR
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>NZ_AP023197.1|WP_000102278.1|2218003_2218093_+|stress-response-protein-YnhF
MSTDLKFSLVTTIIVLGLIVAVGLTAALH
>NZ_AP023197.1|WP_021556847.1|2218258_2219428_+|MFS-transporter
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSCILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFFSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPETVCVANS
>NZ_AP023197.1|WP_000007283.1|2219573_2220155_-|superoxide-dismutase-[Fe]
MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA

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Crispr_ID: NZ_AP023197_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP023197_7

2862980-2863071

Orphan

Consensus_repeat	Method
CCACCTTTTTTACCTGCTTCAGATGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP023197_7

>merge|NZ_AP023197|7|2862980-2863071|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGCGCGCTGCGGATCATTCTTGAAATTACCCCCGCTGTGCTGTCCACCTTTTTTACCTGCTTCTGATGC

>NZ_AP023197|7|7|2862980-2863071|CRISPRCasFinder
CCACCTTTTTTACCTGCTTCAGATGC	GCGCTGCGGATCATTCTTGAAATTACCCCCGCTGTGCTGT
CCACCTTTTTTACCTGCTTCTGATGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP023197.1\|WP_001063119.1\|2869389_2871936_-\|trimethylamine-N-oxide-reductase-TorA	unknown	unknown	gnl\|CDD\|237909
NZ_AP023197.1\|WP_021556669.1\|2857422_2858514_+\|pyrimidine-utilization-protein-A	unknown	unknown	gnl\|CDD\|163355
NZ_AP023197.1\|WP_000209881.1\|2868793_2869393_-\|molecular-chaperone-TorD	unknown	unknown	gnl\|CDD\|235326
NZ_AP023197.1\|WP_001382997.1\|2859611_2860412_+\|pyrimidine-utilization-protein-D	unknown	unknown	gnl\|CDD\|211851
NZ_AP023197.1\|WP_001120119.1\|2873237_2873930_+\|two-component-system-response-regulator-TorR	unknown	unknown	gnl\|CDD\|182711
NZ_AP023197.1\|WP_021556671.1\|2852494_2856457_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|236989
NZ_AP023197.1\|WP_001225229.1\|2871935_2873108_-\|pentaheme-c-type-cytochrome-TorC	unknown	unknown	gnl\|CDD\|184992
NZ_AP023197.1\|WP_001028092.1\|2861022_2861517_+\|pyrimidine-utilization-flavin-reductase-protein-F	unknown	unknown	gnl\|CDD\|132654
NZ_AP023197.1\|WP_001044306.1\|2864376_2865618_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	unknown	unknown	gnl\|CDD\|182284
NZ_AP023197.1\|WP_021556670.1\|2856496_2857135_-\|HTH-type-transcriptional-regulator-RutR	unknown	unknown	gnl\|CDD\|184970
NZ_AP023197.1\|WP_000979516.1\|2852230_2852440_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP023197.1\|WP_001001169.1\|2860421_2861012_+\|malonic-semialdehyde-reductase	unknown	unknown	gnl\|CDD\|180040
NZ_AP023197.1\|WP_001151437.1\|2863494_2864091_+\|NAD(P)H:quinone-oxidoreductase	unknown	unknown	gnl\|CDD\|179647
NZ_AP023197.1\|WP_000024560.1\|2868336_2868642_+\|chaperone-modulator-CbpM	unknown	unknown	gnl\|CDD\|182346
NZ_AP023197.1\|WP_174402652.1\|2865899_2867156_-\|YccE-family-protein	unknown	unknown	gnl\|CDD\|182074
NZ_AP023197.1\|WP_001126780.1\|2859217_2859604_+\|pyrimidine-utilization-protein-C	unknown	unknown	gnl\|CDD\|274677
NZ_AP023197.1\|WP_000420621.1\|2867416_2868337_+\|curved-DNA-binding-protein	unknown	unknown	gnl\|CDD\|182347
NZ_AP023197.1\|WP_001307708.1\|2858513_2859206_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	unknown	unknown	gnl\|CDD\|163356
NZ_AP023197.1\|WP_001143120.1\|2864111_2864339_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182285
NZ_AP023197.1\|WP_021556668.1\|2861537_2862866_+\|pyrimidine-utilization-transport-protein-G	unknown	unknown	gnl\|CDD\|132655

Protein	Function_ID	Function_description	E-value
NZ_AP023197.1\|WP_001063119.1\|2869389_2871936_-\|trimethylamine-N-oxide-reductase-TorA	gnl\|CDD\|237909	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA.	0
NZ_AP023197.1\|WP_021556669.1\|2857422_2858514_+\|pyrimidine-utilization-protein-A	gnl\|CDD\|163355	TIGR03612, RutA, pyrimidine utilization protein A. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the luciferase family defined by pfam00296 and is likely a FMN-dependent monoxygenase. [Unknown function, Enzymes of unknown specificity].	0
NZ_AP023197.1\|WP_000209881.1\|2868793_2869393_-\|molecular-chaperone-TorD	gnl\|CDD\|235326	PRK04976, torD, chaperone protein TorD; Validated.	2.70215e-82
NZ_AP023197.1\|WP_001143120.1\|2864111_2864339_+\|hypothetical-protein	gnl\|CDD\|182285	PRK10174, PRK10174, hypothetical protein; Provisional.	8.66725e-44
NZ_AP023197.1\|WP_001120119.1\|2873237_2873930_+\|two-component-system-response-regulator-TorR	gnl\|CDD\|182711	PRK10766, PRK10766, two-component system response regulator TorR.	1.50001e-137
NZ_AP023197.1\|WP_021556671.1\|2852494_2856457_+\|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase	gnl\|CDD\|236989	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed.	0
NZ_AP023197.1\|WP_001225229.1\|2871935_2873108_-\|pentaheme-c-type-cytochrome-TorC	gnl\|CDD\|184992	PRK15032, PRK15032, pentaheme c-type cytochrome TorC.	0
NZ_AP023197.1\|WP_001028092.1\|2861022_2861517_+\|pyrimidine-utilization-flavin-reductase-protein-F	gnl\|CDD\|132654	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the flavin reductase family defined by pfam01613. Presumably, this protein recycles the flavin of the RutA luciferase-like oxidoreductase.	5.69178e-106
NZ_AP023197.1\|WP_001044306.1\|2864376_2865618_-\|bifunctional-glucose-1-phosphatase/inositol-phosphatase	gnl\|CDD\|182284	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional.	0
NZ_AP023197.1\|WP_021556670.1\|2856496_2857135_-\|HTH-type-transcriptional-regulator-RutR	gnl\|CDD\|184970	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional.	1.12135e-152
NZ_AP023197.1\|WP_001382997.1\|2859611_2860412_+\|pyrimidine-utilization-protein-D	gnl\|CDD\|211851	TIGR03611, RutD, pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.	1.2986e-140
NZ_AP023197.1\|WP_001001169.1\|2860421_2861012_+\|malonic-semialdehyde-reductase	gnl\|CDD\|180040	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional.	4.53816e-131
NZ_AP023197.1\|WP_001151437.1\|2863494_2864091_+\|NAD(P)H:quinone-oxidoreductase	gnl\|CDD\|179647	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional.	8.51484e-133
NZ_AP023197.1\|WP_000024560.1\|2868336_2868642_+\|chaperone-modulator-CbpM	gnl\|CDD\|182346	PRK10265, PRK10265, chaperone modulator CbpM.	5.75956e-65
NZ_AP023197.1\|WP_001126780.1\|2859217_2859604_+\|pyrimidine-utilization-protein-C	gnl\|CDD\|274677	TIGR03610, RutC, pyrimidine utilization protein C. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the endoribonuclease L-PSP family defined by pfam01042.	5.99808e-85
NZ_AP023197.1\|WP_000420621.1\|2867416_2868337_+\|curved-DNA-binding-protein	gnl\|CDD\|182347	PRK10266, PRK10266, curved DNA-binding protein.	0
NZ_AP023197.1\|WP_001307708.1\|2858513_2859206_+\|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB	gnl\|CDD\|163356	TIGR03614, RutB, pyrimidine utilization protein B.	5.84226e-169
NZ_AP023197.1\|WP_174402652.1\|2865899_2867156_-\|YccE-family-protein	gnl\|CDD\|182074	PRK09784, PRK09784, YccE family protein.	0
NZ_AP023197.1\|WP_021556668.1\|2861537_2862866_+\|pyrimidine-utilization-transport-protein-G	gnl\|CDD\|132655	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).	0

>NZ_AP023197.1|WP_021556668.1|2861537_2862866_+|pyrimidine-utilization-transport-protein-G
MAMFGFPHWQLKSTSTESGVVAPDERLPFAQTAIMGVQHAVAMFGATVLMPILMGLDPNLSILMSGIGTLLFFFITGGRVPSYLGSSAAFVGVVIAATGFNGQGINPNISIALGGIIACGLVYTVIGLVVVKIGTRWIERLMPPVVTGAVVMAIGLNLAPIAVKSVSASAFDSWMAVMTVLCIGLVAVFTRGMIQRLLILVGLIVACLLYGVMTNVLGLGKAVDFTLVSHAAWFGLPHFSTPGFNGQAMMLIAPVAVILVAENLGHLKAVAGMTGRNMDPYMGRAFVGDGLATMLSGSVGGSGVTTYAENIGVMAVTKVYSTLVFVAAAVIAMLLGFSPKFGALIHTIPAAVIGGASIVVFGLIAVAGARIWVQNRVDLSQNGNLIMVAVTLVLGAGDFALTLGGFTLGGIGTATFGAILLNALLSRRLVDVPPPEVVHQEP
>NZ_AP023197.1|WP_001028092.1|2861022_2861517_+|pyrimidine-utilization-flavin-reductase-protein-F
MNIVDQQTFRDAMSCMGAAVNIITTDGPAGRAGFTASAVCSVTDTPPTLLVCLNRGASVWPVFNENRTLCVNTLSAGQEPLSNLFGGKTPMEHRFAAARWQTGVTGCPQLEEALVSFDCRISQVVSIGTHDILFCAIEAIHRHATPYGLVWFDRSYHALMRPAC
>NZ_AP023197.1|WP_001001169.1|2860421_2861012_+|malonic-semialdehyde-reductase
MNEAVSPGALSTLFTDARTHNGWRETPVSDETLREIYALMKWGPTSANCSPARIVFIRTAEGKERLRPALSSGNLQKTLTAPVTAIVAWDSEFYERLPQLFPHGDARSWFTSSPQLAEETAFRNSSMQAAYLIIACRALGLDTGPMSGFDRQHVDDAFFAGSTLKSNLLINIGYGDSSKLFARLPRLSFEEACGLL
>NZ_AP023197.1|WP_001382997.1|2859611_2860412_+|pyrimidine-utilization-protein-D
MKLSLSPPPYADAPVVVLISGLGGSGSYWLPQLAVLEQEYQVVCYDQRGTGNNPDTLAEDYSIAQMAAELHQALVAAGIEHYAVVGHALGALVGMQLALDYPASVTVLVSVNGWLRINAHTRRCFQVRERLLYSGGAQAWVEAQPLFLYPADWMAARAPRLEAEDALALAHFQGKNNLLRRLNALKRADFSHHADRIRCPVQIICASDDLLVPSACSSELHAALPDSQKMVMRYGGHACNVTDPETFNALLLNGLASLLHHREAAL
>NZ_AP023197.1|WP_001126780.1|2859217_2859604_+|pyrimidine-utilization-protein-C
MPKSVIIPAGSSAPLAPFVPGTLADGVVYVSGTLAFDQHNNVLFADDPKAQTRHVLETIRKVIETAGGTMADVTFNSIFITDWKNYAAINEIYAEFFPGDKPARFCIQCGLVKPDALVEIATIAHIAK
>NZ_AP023197.1|WP_001307708.1|2858513_2859206_+|peroxyureidoacrylate/ureidoacrylate-amidohydrolase-RutB
MTTLTARPEAITFDPQQSALIVVDMQNAYATPGGYLDLAGFDVSTTRPVIANIQTAVTAARAAGMLIIWFQNGWDEQYVEAGGPGSPNFHKSNALKTMRKQPQLQGKLLAKGSWDYQLVDELVPQPGDIVLPKPRYSGFFNTPLDSILRSRGIRHLVFTGIATNVCVESTLRDGFFLEYFGVVLEDATHQAGPEFAQKAALFNIETFFGWVSDVETFCDALSPTSFARIA
>NZ_AP023197.1|WP_021556669.1|2857422_2858514_+|pyrimidine-utilization-protein-A
MKIGVFVPIGNNGWLISTHAPQYMPTFELNKAIVQKAEHYHFDFALSMIKLRGFGGKTEFWDHNLESFTLMAGLAAVTSRIQIYATAATLTLPPAIVARMAATIDSISGGRFGVNLVTGWQKPEYEQMGIWPGDDYFSRRYDYLTEYVQVLRDLWGSGKSDFKGDFFTMNDCRVSPQPSVPMKVICAGQSDAGMAFSAQYADFNFCFGKGVNTPSAFAPTAARMKQAAEQTGRDVGSYVLFMVIADETDDAARAKWEHYKAGADEEALSWLTEQSQKDTRSGTDTNVRQMADPTSAVNINMGTLVGSYASVARMLDEVASVPGAEGVLLTFDDFLSGIETFGERIQPLMQCRAHLPVLTQEVA
>NZ_AP023197.1|WP_021556670.1|2856496_2857135_-|HTH-type-transcriptional-regulator-RutR
MTQGAVKTTGRRSRAVSAKKKAILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLKAFREDFAPLAAIKEYIRLKLEVSRDYPQASRLFCMEMLAGAPLLMDELTGDLKVLIDEKSALIAGWVKSGKLAPIDPQHLIFMIWASTQHYADFAPQVEAVTGATLRDEVFFNQTVENVQRIIIEGIRPR
>NZ_AP023197.1|WP_021556671.1|2852494_2856457_+|trifunctional-transcriptional-regulator/proline-dehydrogenase/L-glutamate-gamma-semialdehyde-dehydrogenase
MGTTTMGVKLDDATRERIKSAATRIDRTPHWLIKQAIFSYLEQLENSDTLPELPALLSGAANESDEAPTPAEEPHQPFLDFAEQILPQSVSRAAITAAYRRPETEAVSMLLEQARLPQPVAEQAHKLAYQLADKLRNQKNASGRAGMVQGLLQEFSLSSQEGVALMCLAEALLRIPDKATRDALIRDKISNGNWQSHIGRSPSLFVNAATWGLLFTGKLVSTHNEASLSRSLNRIIGKSGEPLIRKGVDMAMRLMGEQFVTGETIAEALANARKLEEKGFRYSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKLSALHPRYSRAQYDRVMEELYPRLKSLTMLARQYDIGINIDAEEADRLEISLDLLEKLCFEPELAGWNGIGFVIQAYQKRCPLVIDYLIDLATRSRRRLMIRLVKGAYWDSEIKRAQMDGLEGYPVYTRKVYTDVSYLACAKKLLAVPNLIYPQFATHNAHTLAAIYQLAGQNYYPGQYEFQCLHGMGEPLYEQVTGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLENGANTSFVNRIADTSLPLDELVADPVTAVEKLAQQEGQTGLPHPKIPLPRDLYGHGRDNSAGLDLANEHRLASLSSALLNSALQKWQALPMLEQPVAAGEMSPVINPAEPKDIVGYVREATPREVELALESAVNNAPIWFATPPAERAAILHRAAVLMESQMQQLIGILVREAGKTFSNAIAEVREAVDFLHYYAGQVRDDFANETHRPLGPVVCISPWNFPLAIFTGQIAAALAAGNSVLAKPAEQTPLIAAQGIAILLEAGVPPGVVQLLPGRGETVGAQLTGDDRVRGVMFTGSTEVATLLQRNIASRLDAQGRPIPLIAETGGMNAMIVDSSALTEQVVIDVLASAFDSAGQRCSALRVLCLQDEIADHTLKMLRGAMAECRMGNPGRLTTDIGPVIDSEAKANIERHIQTMRSKGRPVFQAVRENNEDAREWQSGTFVAPTLIELDDFAELQKEVFGPVLHVVRYNRNQLPELIEQINASGYGLTLGVHTRIDETIAQVTGSAHVGNLYVNRNMVGAVVGVQPFGGEGLSGTGPKAGGPLYLYRLLANRPESALAVTLARQDAEYPVDAQLKAALTQPLNALREWLANRPELQALCTQYVELAQAGTQRLLPGPTGERNTWTLLPRERVLCIADDEQDALTQLAAVLAVGSQVLWPDDALHRQLVKALPSAVSERIQLAKAENITAQPFDAVIFHGDSDQLRALCEAVAARDGAIVSVQGFARGESNILLERLYIERSLSVNTAAAGGNASLMTIG
>NZ_AP023197.1|WP_000979516.1|2852230_2852440_-|hypothetical-protein
MMLQLCATMLNVTCVASLKMNEMLIKEIDMTGIKKITQTFSLRQLTFLKGATAKNVRECNLMKNSVAEH
>NZ_AP023197.1|WP_001151437.1|2863494_2864091_+|NAD(P)H:quinone-oxidoreductase
MAKVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYAAQELFDVSQVRGGTPYGATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG
>NZ_AP023197.1|WP_001143120.1|2864111_2864339_+|hypothetical-protein
MPTQEAKAHHVGEWASLRNTSPEIAEAIFEVAGYDEKMAEKIWEEGSDEVLVKAFAKTDKDSLFWGEQTIERKNV
>NZ_AP023197.1|WP_001044306.1|2864376_2865618_-|bifunctional-glucose-1-phosphatase/inositol-phosphatase
MNKTLIAATVAGIVLLASNAQAQTVPEGYQLQQVLMMSRHNLRAPLANNGSVLEQSTPNKWPEWDVPGGQLTTKGGVLEVYMGHYMREWLAEQGMVKSGECPPPDTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKMGTMDPTFNPVITDDSAAFSEQAVAAMEKELSKLQLTDSYQLLEKIVNYKDSPACKEKQQCSLVDGKNTFSAKYQQEPGVSGPLKVGNSLVDAFTLQYYEGFPMDQVAWGEIKSDQQWKVLSKLKNGYQDSLFTSPEVARNVAKPLVSYIDKALVTDRTSAPKITVLVGHDSNIASLLTALDFKPYQLHDQNERTPIGGKIVFQRWHDSKANRDLMKIEYVYQSAEQLRNADALTLQAPAQRVTLELSGCPIDADGFCPMDKFDSVLNEAVK
>NZ_AP023197.1|WP_174402652.1|2865899_2867156_-|YccE-family-protein
MGNIHGISCTANNYLKQAWNDIKNEYEKNKTYSITLFENTLVCFMRLYKEIRRQQAEDYIPCLECDSLEKEFEEIQNDNDLSLFMKTLRTNDKQIYSGVSGGITYTIQYVEDVDIVRVSLPGRGSESITDFKGYYWYGFMEYIENINACDDVYSDYCFDNDENMSIQPEWINTPGISDLDSGIDLSGISFIQSEINKTYGLKYAPVDGDGYCLLRAILVLKQHEYSWALGSHKTQKQVYEEFIKIIDKQTIEALVDTAFYNLREDVKTLFGVDLQSDNKIQGVGSPMSWSFLFFKKQFIDSCLNNEKCILHLPEFIFNDNKNLLALDTDTSDRIKAVKNFLSVLSDSICSLFIVNSNVASISLGNESFSTDEDLEYGYLINTGNHYDVYLPPELFAQAYKLNNKEMNAQLDYLNRYAI
>NZ_AP023197.1|WP_000420621.1|2867416_2868337_+|curved-DNA-binding-protein
MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQMWQHRNDPQFNRQFHHGDGQSFNAEDFDDIFSSIFGQHARQSRQRPATRGHDIEIEVAVFLEETLTEHKRTISYNLPVYNAFGMIEQEIPKTLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPVSPWEAALGAKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSKKQTGDLYAVLKIVMPPKPDENTAALWQQLADAQSSFDPRKDWGKA
>NZ_AP023197.1|WP_000024560.1|2868336_2868642_+|chaperone-modulator-CbpM
MANVTVTFTITEFCLHTGISEEELNEIVGLGVVEPREIQETTWVFDDHAAIVVQRAVRLRHELALDWPGIAVALTLMDDIAHLKQENRLLRQRLSRFVAHP
>NZ_AP023197.1|WP_000209881.1|2868793_2869393_-|molecular-chaperone-TorD
MTTLTAQQIACVYAWLAQLFSRELDDEQLTQIASAQMAEWFSLLKSEPPLTAAVDELENRVATLTVRDDARLELAADFCGLFLMTDKQAALPYASAYKQDEQEIKRLLVEAGMETSGNFNEPADHLAIYLELLSHLHFSLGEGTVPARRIDSLRQKTLTALWQWLPEFASRCRQYDSFGFYAALSQLLLVLVEGDHQNR
>NZ_AP023197.1|WP_001063119.1|2869389_2871936_-|trimethylamine-N-oxide-reductase-TorA
MNNNDLFQASRRRFLAQLGGLTVAGMLGPSLLTPRRATAAQAATEAVISKEGILTGSHWGAIRATVKDGRFVAAKPFELDKYPSKMIAGLPDHVHNAARIRYPMVRVDWLRKRHLSDTSQRGDNRFVRVSWDEALDMFYEELERVQKTHGPSALLTASGWQSTGMFHNASGMLAKAIALHGNSVGTGGDYSTGAAQVILPRVVGSMEVYEQQTSWPLVLKNSKTIVLWGSDLLKNQQANWWCPDHDVYEYYAQLKAKVAAGEIEVISIDPVVTSTHEYLGREHVKHIAVNPQTDVPLQLALAHTLYSENLYDKNFLANYCVGFEQFLPYLLGEKDGQPKDAAWAEKLTGIDAETIRGLARQMAANRTQIIAGWCVQRMQHGEQWAWMIVVLAAMLGQIGLPGGGFGFGWHYNGAGTPGRKGVILSGFSGSTSIPPVHDNSDYKGYSSTIPIARFIDAILEPGKVINWNGKSVKLPPLKMCIFAGTNPFHRHQQINRIIEGWRKLETVIAIDNQWTSTCRFADIVLPATTQFERNDLDQYGNHSNRGIIAMKQVVPPQFEARNDFDIFRELCRRFNREEAFTEGLDEMGWLKRIWQEGVQQGKGRGVHLPAFDDFWNNKEYVEFDHPQMFVRHQAFREDPDLEPLGTPSGLIEIYSKTIADMNYDDCQGHPMWFEKIERSHGGPGSQTYPLHLQSVHPDFRLHSQLCESETLRQQYTVAGKEPVFINPQDASARGIRHGDVVRVFNARGQVLAGAVVSDRYAPGVARIHEGAWYDPDKGGEPGALCKYGNPNVLTIDIGTSQLAQATSAHTTLVEIEKYNGTVDQVTAFNGPVEMVAQCEYVPASQVKS
>NZ_AP023197.1|WP_001225229.1|2871935_2873108_-|pentaheme-c-type-cytochrome-TorC
MRKFWNALRRPSARWSVLALVAIGIVIGIALIVLPHVGIKVTSTTEFCVSCHSMQPVYEEYKQSVHFQNASGVRAECHDCHIPPDIPGMVKRKLEASNDIYQTFIAHSIDTPEKFEAKRAELAEREWARMKENNSATCRSCHNYDAMDHAKQHPEAARQMKVAAKDNQSCIDCHKGIAHQLPDMSSGFRKQFDELRASANDSGDTLYSIDIKPIYAAKGDKEASGSLLPASEVKVLKRDGDWLQIEITGWTESAGRQRVLTQFPGKRIFVASIRGDVQQQVKTLEKTTVADTNTEWSKLQATAWMKKGDMVNDIKPIWAYADSLYNGTCNQCHGAPEISHFDANGWIGTLNGMIGFTSLDKREERTLLKYLQMNASDTAGKAHGDKKEEK
>NZ_AP023197.1|WP_001120119.1|2873237_2873930_+|two-component-system-response-regulator-TorR
MPHHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQPVDLILLDINLPDENGLMLTRALRERSTVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRIDLARQAQPYTQDNCYRFAGYCLNVSRHTLERDGEPIKLTRAEYEMLVAFVTNPGEILSRERLLRMLSARRVENPDLRTVDVLIRRLRHKLSADLLVTQHGEGYFLAADVC

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Crispr_ID: NZ_AP023197_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP023197_8

3070419-3070567

Orphan

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGTACGGCAGTGAAC	PILER-CR

2 spacers

The CRISPR arrays of NZ_AP023197_8

>merge|NZ_AP023197|8|3070419-3070567|CRISPRCasFinder,PILER-CR
CATTTTATCTGCCTGTACGGCAGTGAACATGGTGGGCGGGTGGAGTATGTTACCAGTGAATTTCTAAGCTGCCTGTACGGCAGTGAACGTTCGCTGCAACCGCTAGCCAAGACGGTAGGTTTTTCTAAGCTGCCTGTACGGCAGTGAAC

>NZ_AP023197|8|8|3070419-3070567|CRISPRCasFinder
CATTTTATCTGCCTGTACGGCAGTGAAC	ATGGTGGGCGGGTGGAGTATGTTACCAGTGAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GTTCGCTGCAACCGCTAGCCAAGACGGTAGGTT
TTTCTAAGCTGCCTGTACGGCAGTGAAC

>NZ_AP023197|8|2|3070427-3070567|PILER-CR
CTGCCTGTACGGCAGTGAACATGGTGGG	CGGGTGGAGTATGTTACCAGTGAATTTCTAAG
CTGCCTGTACGGCAGTGAACGTTCGCTG	CAACCGCTAGCCAAGACGGTAGGTTTTTCTAAG
CTGCCTGTACGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP023197.1\|WP_000126656.1\|3077482_3077905_-\|single-stranded-DNA-binding-protein	unknown	unknown	gnl\|CDD\|239942
NZ_AP023197.1\|WP_072643829.1\|3068991_3070200_-\|tyrosine-type-recombinase/integrase	unknown	unknown	gnl\|CDD\|271182
NZ_AP023197.1\|WP_000190777.1\|3075873_3076215_-\|head-decoration-protein	unknown	unknown	gnl\|CDD\|376964
NZ_AP023197.1\|WP_001710151.1\|3074192_3074477_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP023197.1\|WP_063112633.1\|3077901_3078147_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP023197.1\|WP_104213618.1\|3056394_3056781_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP023197.1\|WP_065304405.1\|3067202_3068768_+\|DUF3987-domain-containing-protein	unknown	unknown	gnl\|CDD\|379041
NZ_AP023197.1\|WP_001179421.1\|3075478_3075862_-\|AlpA-family-phage-regulatory-protein	unknown	unknown	gnl\|CDD\|225848
NZ_AP023197.1\|WP_000520781.1\|3073085_3073406_-\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
NZ_AP023197.1\|WP_000861580.1\|3056789_3056981_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP023197.1\|WP_072643827.1\|3065014_3066838_-\|hypothetical-protein	unknown	unknown	unknown
NZ_AP023197.1\|WP_072643828.1\|3066938_3067187_+\|AlpA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225848
NZ_AP023197.1\|WP_000228102.1\|3076224_3077265_-\|major-capsid-protein	unknown	unknown	gnl\|CDD\|377147
NZ_AP023197.1\|WP_021548686.1\|3074734_3075277_-\|terminase-small-subunit	unknown	unknown	gnl\|CDD\|226673
NZ_AP023197.1\|WP_174402657.1\|3057058_3059998_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|350691
NZ_AP023197.1\|WP_000934041.1\|3070778_3073055_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
NZ_AP023197.1\|WP_000282094.1\|3063240_3063804_-\|inovirus-type-Gp2-protein	unknown	unknown	gnl\|CDD\|371695
NZ_AP023197.1\|WP_023285886.1\|3059994_3061419_+\|hypothetical-protein	unknown	unknown	unknown
NZ_AP023197.1\|WP_063112632.1\|3078433_3080251_-\|DNA-primase	unknown	unknown	gnl\|CDD\|225913
NZ_AP023197.1\|WP_174402658.1\|3061605_3062574_+\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|290455

Protein	Function_ID	Function_description	E-value
NZ_AP023197.1\|WP_000126656.1\|3077482_3077905_-\|single-stranded-DNA-binding-protein	gnl\|CDD\|239942	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB). SSBs bind with high affinity to ssDNA. They bind to and protect ssDNA intermediates during DNA metabolic pathways. All bacterial and eukaryotic SSBs studied to date oligomerize to bring together four OB folds in their active state. The majority (e.g. Escherichia coli SSB) have a single OB fold per monomer, which oligomerize to form a homotetramer. However, Deinococcus and Thermus SSB proteins have two OB folds per monomer, which oligomerize to form a homodimer. Mycobacterium tuberculosis SSB varies in quaternary structure from E. coli SSB. It forms a dimer of dimers having a unique dimer interface, which lends the protein greater stability. Included in this group are OB folds similar to Escherichia coli PriB. E.coli PriB is homodimeric with each monomer having a single OB fold. It does not appear to form higher order oligomers. PriB is an essential protein for the replication restart at forks that have stalled at sites of DNA damage. It also plays a role in the assembly of primosome during replication initiation at the bacteriophage phiX174 origin. PriB physically interacts with SSB and binds ssDNA with high affinity.	7.49733e-24
NZ_AP023197.1\|WP_072643829.1\|3068991_3070200_-\|tyrosine-type-recombinase/integrase	gnl\|CDD\|271182	cd00801, INT_P4_C, Bacteriophage P4 integrase, C-terminal catalytic domain. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. The P4 integrase mediates integrative and excisive site-specific recombination between two sites, called attachment sites, located on the phage genome and the bacterial chromosome. The phage attachment site is often found adjacent to the integrase gene, while the host attachment sites are typically situated near tRNA genes. This family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	2.63881e-55
NZ_AP023197.1\|WP_000190777.1\|3075873_3076215_-\|head-decoration-protein	gnl\|CDD\|376964	pfam02924, HDPD, Bacteriophage lambda head decoration protein D.	2.90517e-11
NZ_AP023197.1\|WP_065304405.1\|3067202_3068768_+\|DUF3987-domain-containing-protein	gnl\|CDD\|379041	pfam13148, DUF3987, Protein of unknown function (DUF3987). A family of uncharacterized proteins found by clustering human gut metagenomic sequences.	6.67665e-62
NZ_AP023197.1\|WP_001179421.1\|3075478_3075862_-\|AlpA-family-phage-regulatory-protein	gnl\|CDD\|225848	COG3311, AlpA, Predicted transcriptional regulator [Transcription].	4.48742e-10
NZ_AP023197.1\|WP_000520781.1\|3073085_3073406_-\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	2.48686e-49
NZ_AP023197.1\|WP_072643828.1\|3066938_3067187_+\|AlpA-family-transcriptional-regulator	gnl\|CDD\|225848	COG3311, AlpA, Predicted transcriptional regulator [Transcription].	2.22847e-18
NZ_AP023197.1\|WP_000228102.1\|3076224_3077265_-\|major-capsid-protein	gnl\|CDD\|377147	pfam03864, Phage_cap_E, Phage major capsid protein E. Major capsid protein E is involved with the stabilisation of the condensed form of the DNA molecule in phage heads.	4.27122e-46
NZ_AP023197.1\|WP_021548686.1\|3074734_3075277_-\|terminase-small-subunit	gnl\|CDD\|226673	COG4220, COG4220, Phage DNA packaging protein, Nu1 subunit of terminase [DNA replication, recombination, and repair].	1.15611e-28
NZ_AP023197.1\|WP_174402658.1\|3061605_3062574_+\|IS5-family-transposase	gnl\|CDD\|290455	pfam13737, DDE_Tnp_1_5, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	4.61152e-55
NZ_AP023197.1\|WP_000934041.1\|3070778_3073055_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
NZ_AP023197.1\|WP_000282094.1\|3063240_3063804_-\|inovirus-type-Gp2-protein	gnl\|CDD\|371695	pfam11726, Inovirus_Gp2, Inovirus Gp2. Isoform G2P plays an essential role in viral DNA replication; it binds to the origin of replication and cleaves the dsDNA replicative form I (RFI) and becomes covalently bound to it via phosphotyrosine bond, generating the dsDNA replicative form II (RFII).	0.000117406
NZ_AP023197.1\|WP_063112632.1\|3078433_3080251_-\|DNA-primase	gnl\|CDD\|225913	COG3378, COG3378, Phage associated DNA primase [General function prediction only].	7.07624e-87
NZ_AP023197.1\|WP_174402657.1\|3057058_3059998_+\|AAA-family-ATPase	gnl\|CDD\|350691	cd17933, DEXSc_RecD-like, DEXS-box helicase domain of RecD and similar proteins. RecD is a member of the RecBCD (EC 3.1.11.5, Exonuclease V) complex. It is the alpha chain of the complex and functions as a 3'-5' helicase. The RecBCD enzyme is both a helicase that unwinds, or separates the strands of DNA, and a nuclease that makes single-stranded nicks in DNA. RecD is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.441e-33

>NZ_AP023197.1|WP_072643829.1|3068991_3070200_-|tyrosine-type-recombinase/integrase
MAVLTDTKARHIKPDDKPLPHGGITGLTLHPSSVKGRGKWVFRYVSPVTQKRRNAGLGTYPEVSIAEAARTARIMREQLAAGDDPLEIKKAEAEKVVIPTFADAARRVHAELSPGWENPKHVRQWLSTLENYAFPQLGAKTLDSITAADVAETLRPVWLTLSETASRVKQRIHVVMQWGWAHGFCVANPVDVVDHLLPQQSRGRDEHQPAIPWRQLPLFVATSVYTDEPYNVTRALLLMVILTATRSGEARGMRWAEIDFHKRIWTIPAERMKARIQHRVPLSRQAIHVLENIRGLHDELVFPSPRKQQILSDMVLTSFLRKKKAISDIPGRVATAHGFRSTFRDWCSEQGYSRDLAERALAHTLKNKVEAAYHRTDLLDQRIPMMQAWADYVMSQIMENQR
>NZ_AP023197.1|WP_065304405.1|3067202_3068768_+|DUF3987-domain-containing-protein
MTKLSPPELDITKLPDRCQALLDEMHEETGISREILLSVMLTVKAASVQDTHEVELSGGQRTSLQIYMCLSSASGSGKTSACAKLIAPVHETEEELHQAYIDDKKNYDRMMEMWTTDKKILERRYKKEMERSPENAAAARAALEKCIANKPVPPVQQVLIVNDATPEGIALKLSQSPSLLLLSDEGGTILDKRFERKSALYNTLWSGQPVTVERASRPGFRVKDSRLTMLILTQPVIFDKFFTLTGDQIRGNGFLARVLFCEPGANKIMTTEPHTATPVVTQQCATCFHEKSFGSQIRDSLRASRERRAKGEQRIRMTLSHAASHDLEIFHEENMSAVRQNPRMTTFEDIIVRKREQAVRIAALLELENNPHGTVITRESINSAIYLVDFYFQHLISKLESLREISPAEKLDKWLRENIIRVKGYEYQKSHILQYGPYALRNKCVLDEALDILAEQKKIAIDYSIGQKIIYIGDAITPCELANEANIPIMERGMFIVCWDHKLNKYRNEEQTKIWNITTKN
>NZ_AP023197.1|WP_072643828.1|3066938_3067187_+|AlpA-family-transcriptional-regulator
MSTQTGYFYTPSRILRMAELTRLLGISRSTIYEKMNPASKYYDATFPRPVRLGSSAVGWRASAIDEWLTLHTTPTRSVTKDK
>NZ_AP023197.1|WP_072643827.1|3065014_3066838_-|hypothetical-protein
MRMFTNLLYDICTVFELFKEGESPRDKRKSTDFGAHQRFWDQRYNELSHIIDAEGVYSLEQRRIIFSRYEYFYYMMNSYPVYSTLKSEYIRNYFLKSFGVVFIVLDIYNTYRPENETGFYYHIYNFLQKSYCPCLDYSGTESDEAAVKRYLREYLAELGFNREDFRENGKMYELGKYQGTIRKGYGKRKSLMKQYIKACKNEYKKDYREKKLDKSELDRILNNIDKFYYAFYSLSILLDMQRKVKILDSIAYYLRVLIREGLWVHGLYGYAARYLYDFNIFDTTPYARALLERFHEFESGPKGALTRYIVSLDDKSQEYIESLKDMVFNLSDKKSYDDVYLENIINYFEQLQNARGYVTRCYMLLAVFIYLIRRNKLHKALRFYDESPKYELPSGYLPGAFSVLRIALEIKLNREKIKHGSLFELLDYVKAYQDAFMDLRVVTDPAYNEDEIQYDANNFTLMRVIKMYNSMLANISTKSDIQPPYITGLLDNVERALDKINILIDKERVYDGETLAELITENKILSSRESKENLIGLFTGRHKYTLLQCIEKLGVLVDYVISPVDDIKNVMMLYGNNAENKNRRRLIYNALTIICGDDTKNNQSDPR
>NZ_AP023197.1|WP_000282094.1|3063240_3063804_-|inovirus-type-Gp2-protein
MYNANPNYEMNFAILKDVNEHMEGLFQRFSKLLPFRIDFAYRKDTPSFGHSCKHSMCMEIYRLLSETQTMLAGYYWVMEYTPDKGLHIHFIGYLDGQRHKNSYQISRQLGDIWRRITEGEGYFHLCRAKDKYPVRIDHVIHYSDKSAVDDLRYALSYLAKQDQKEHGIILGRSRLPEKSNRGRPRHN
>NZ_AP023197.1|WP_174402658.1|3061605_3062574_+|IS5-family-transposase
MKDQITHLPDNADRSVAKQKFKITNWPTYNKALINRGSITFWLDDEAIQAWYESATPSSRGRPQRYSDLAITTVLVIKRVFRLTLRAAQGFIDSIFTLMNVPLRCPDYTNVSKRAKSVNVSFKTFTRGEIAHLVIDSTGLKVFGEGEWKVKKHGKERRRIWRKLHLAVDSNTHEIICAYLSLNNVTDSEAFPGLIRQTHRKIRAASADGAYDTRLCHDELRRKKISALIPPRKGAGYWPGEYADRNRAVANQRLTGSNARWKWTTDYNRRSIAETAMYRVKQLFGGSLTLRDYDGQVAEAMALVRALNKMTKAGMPESVRIA
>NZ_AP023197.1|WP_023285886.1|3059994_3061419_+|hypothetical-protein
MNEPANRTVNNLRKSGDLQGAWEFGFQALQAAPQDTYLKGALFWVCYEFLKHQLENLNKRASSSNNYRPTDFEFEQIENLLQTIVNLDIATGGLEYKMLLVQFKKSLEWFPTLIHLVLRHQTVLFDDEAKTPFQAEKGEVPSLMLSTARQVASAWLRAREYWHLDLNQVMAFINQTREQASDTKHMMWLDYDQAKCLVVAGQYDQARELILPILRKKQKESWAWGALAATYSKQDQRLAMKFFARGIVSAHDVTFSLRLLQGIIPLLLANQQQAEASMCLKTAIAAYQAHGWKLKQELEQLSMQAWYDSGVDEKQLSPFLNSISHDALNYLHGPMEKVVAIVENIHKSGKGFQVFVNKSTSLSVRMGVHKGKQKPQAGDYVELSVASVDGNKEVVASSSSKQVDMADVSYVEGTLRIAPKGFGFVEDTFVPPFVIGNLKNETKVRALRIMSWDKSKARHNWKAIKLTELNFNEY
>NZ_AP023197.1|WP_174402657.1|3057058_3059998_+|AAA-family-ATPase
MSNFNFLTDISPELAQFGKSAELYCHDDKQVALVKLRCFTEVVVGEIYSRLSLTPPVRDDLYNRLRSYEFKDVVSDKGIWAKLDVLRHKGNKAAHSSNGSDEISLNETLWLIKEAYLVARWYAQAILNKPITPPEFVDPVKPIDHTSRLEAELERQRQELNKREAELKTQLADNSDKYQQQTSELIAQLDEKNDTLSNVKKEQALLQIELEQKQKDLVASQQAFFDYRTREEFKQASISSASSFDLDMEVTRRNIDIFDCFEGVSLTKGQNQIVKQINEFLTDTKQNVFLLNGYAGTGKTFITKGITQYLERIGREFAIMAPTGKAAKVISDKTMQPASTIHRVIYNYDNVKEYKVDGVEGSETYRCYADLKVNVDTAEAVYIIDEASMVSDRYSDGEFFRFGSGYLLKDLLKYINIDHNDHNKKVIFIGDNAQLPPVGMNTSPALDASYLKENYQVAVASGYLTEVVRQKGDSGVLNNAAMLRDGLEQNLFNKLKFEVNDHDVFNLSSENLLSTYLDSCDRKVSRTGESIIIASSNRQVAEYNRLVREYFFTGQQQMVAGDKVISVANHYRADACITNGEFGMIKEVLSPHSELISVDISVKGDTGDMVKRKVNLSFRDVILGFRNDYGEPFFFEAKIVENLLYNDQPTLSSDEHKTLYVHFLNRHPELRRKGNEQKLRIALLQDPYFNAFKLKFGYSITGHKAQGSEWKTVFLQCQTHQKALTKDYFRWLYTAITRTSGILYVMNPPQLRLGDGMKIAGAYQPKAVNLDNSAPEGVEVVRPSTEATNSVATAKFDFQTDIPQLKKLYQLVDACIEGTGITVVDVLHYNYQDRYILQRGNEQASISFNYKGNWKVSGVKSITQDGFDVELMALLGQLEGTLLDVPEPSKDTQFHFSEPFLEEFYLNVMDQINSVGADISKIESRSFCERYAFVKGNELAVIEFWYNKSSQFTKVQPMPQLSNSTRLIDEIICQIGVLL
>NZ_AP023197.1|WP_000861580.1|3056789_3056981_+|hypothetical-protein
MKVAVINYSGSVRKTLISSYLLAPRLTGAKFYAVETINQSASDLGIENVTSFKGDDFSRLIEG
>NZ_AP023197.1|WP_104213618.1|3056394_3056781_+|hypothetical-protein
MNKPADLKPRNLSAAVRLRLNEIENWLDRGLTRHEIAEILDSEYSFSVTAKGLEMALYRTRQNRKNVLHNTHDKSSAKGAAESVLHNTKPSEPEAQESEKAESPGIIDKEFFNKIGENFDPKKFNKKF
>NZ_AP023197.1|WP_000934041.1|3070778_3073055_-|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPNSEEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNELTYGFQSAQKHKAEAAH
>NZ_AP023197.1|WP_000520781.1|3073085_3073406_-|ATP-dependent-Clp-protease-adapter-ClpS
MGKTNDWLDFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA
>NZ_AP023197.1|WP_001710151.1|3074192_3074477_-|hypothetical-protein
MTETEALGIIRSITGISQQAGEQEATQPDSVIAENYARVVAEVMRRDGIELNGVDMRNIRTRVLELLAYRRRSQQRRESAKNTYQWKKPERLRR
>NZ_AP023197.1|WP_021548686.1|3074734_3075277_-|terminase-small-subunit
MKSHLMNKKNMAQSCRVSATAFDKWGVTPVERKGREAFYDVASVIDNRVSNAINQITDDKGEIDNDELLRVRIRLLTAQAEAQELKNERERGDVISTEFCIYALSKLASQISSIMGSLPLTMQRSFPQMTPAMLDGLKKEVVRACNACTKLDENIPRMLSDYLMETTGNVPDKFQPDKDK
>NZ_AP023197.1|WP_001179421.1|3075478_3075862_-|AlpA-family-phage-regulatory-protein
MQNHYNDLKPIAEMMYPDPAVEELKAIADKMRLSERLVDMNQVMELTTLSRRTLLNLEARGEFPERVQVTEGRKAWYLSEVIDWINNIPRASEYCRVPVPKKPDAALCLKIERVRRNARDGRYKLIG
>NZ_AP023197.1|WP_000190777.1|3075873_3076215_-|head-decoration-protein
MATHYTELMSGTEALVTTLGIFSANKGVIPAFTPLMQEDATGALVVWDGTSAGKAVYVSAVQIDTAKKTQAQVYKTGVLNVDALNWPESVKELSAKVAAFVGSGISVQPLARV
>NZ_AP023197.1|WP_000228102.1|3076224_3077265_-|major-capsid-protein
MVDLYSPTQLVQVANAEDVQKKLNALFTSLFFTRSVMFESRDIILDTIDDPNIPIAAFCSPMVGSKVSRDEGYESKTIRPGYMKPKSSIDPNKLAVRPAGVSPEQYNAFGARNIKVKQAIVNQAKAIRARIEWLAVQAITTGKNIIEGDGIERYELDWNIKPQNIITQSGGAEWSGKDKEAFDPNDDIESYAEFSEGVTNIIIMGGNVWKKYRSFRAIKEALDTRRGSNSELETALKDLGDSVSFKGYMGDVAIVVYSGRYTDEDGTEKYFLDPDLMVLGNTALQGIVAYGGIQDPELIRMGLTKAELAPKNYIVPGDPAIEYVQTHSAPQPIPARINRFVTVRIG
>NZ_AP023197.1|WP_000126656.1|3077482_3077905_-|single-stranded-DNA-binding-protein
MTAQIAAYGRLVADPQLKTTSKGTQMTMASMAVPLPCSQADDGTATMWLSVLAFGRQADALAKHHKGELVSVAGNMQVSQWTGQNGETRQGWQVIADSVISARTARPGGKKGQQGQATDALNRAKQQSGNDDPYGDNIPF
>NZ_AP023197.1|WP_063112633.1|3077901_3078147_-|hypothetical-protein
MTAKHTKKSQSHALDLTEHWLRVSIKIIDRNAGEGYAKAHPELISSFMTTAAANFATLTEREIAEAEQVTTINVKIGEQTA
>NZ_AP023197.1|WP_063112632.1|3078433_3080251_-|DNA-primase
MKKAPNLKHQPRDKMTEVIIFAGSDAWAHAKQWQEQDGRLAGDNVPPVWLGEQQLAELDNLQIVPDGRYRVRLYQAGLLRPGLVNTIGQKLAAAGVRDADYYPEGMHSQKRENWREYLERERGELTEKKKVVELPVKKKERVKDDNASSLALNQMGASQRGEVLLAHYGGELAIHADSDTVHHYNGVVWEPVQDKELQRAMAQIFIDAEISYSQNAIKSAVDTMKLSLPVMGNTARNLIGFSNGVFDTRTGNFREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRRSVAENDRKADRVLAALFMVLANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSASMKALEDARERALVVGFSLIIMPDMTRYAGDGAGIKAITGGDKVAIDPKHKAPYSTRIPAVVLAVNNNAMSFSDRSGGISRRRVIFNFSEVVPENERDSMLAEKIEGELAVVIRHLLTRFADQDEARRLLYEQQKSEEALAIKREGDSLVDFCGYLMASVMCDGLLVGNAEIVPFSPRRYLYHAYLAYMRAHGFGKPVTLTRFGKDMPGAMAEYGREYMKRKTKHGLRSNVTLTEESEDWMPSCVSVTNDDSKN

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Crispr_ID: NZ_AP023197_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_AP023197_9

3839121-3839219

Orphan

Consensus_repeat	Method
AGCGTCGCATCAGGCATCCGCGCACAATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_AP023197_9

>merge|NZ_AP023197|9|3839121-3839219|CRISPRCasFinder
AGCGTCGCATCAGGCATCCGCGCACAATTGCCGGATGCGGCACAAGTTTGTAGGCATGATAAGACGCGCTAGCGTCGCATCAGGCATCCGCGCACAATT

>NZ_AP023197|9|9|3839121-3839219|CRISPRCasFinder
AGCGTCGCATCAGGCATCCGCGCACAATT	GCCGGATGCGGCACAAGTTTGTAGGCATGATAAGACGCGCT
AGCGTCGCATCAGGCATCCGCGCACAATT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_AP023197.1\|WP_000056850.1\|3839890_3840640_-\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|223862
NZ_AP023197.1\|WP_000333379.1\|3842257_3843025_-\|class-II-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|372525
NZ_AP023197.1\|WP_000958542.1\|3834762_3835035_+\|flagellar-type-III-secretion-system-protein-FliQ	unknown	unknown	gnl\|CDD\|224898
NZ_AP023197.1\|WP_001695458.1\|3848662_3849673_-\|sel1-repeat-family-protein	unknown	unknown	gnl\|CDD\|223861
NZ_AP023197.1\|WP_021556450.1\|3835036_3835819_+\|flagellar-biosynthetic-protein-FliR	unknown	unknown	gnl\|CDD\|224598
NZ_AP023197.1\|WP_001118038.1\|3847162_3847933_+\|2-oxoglutaramate-amidase	unknown	unknown	gnl\|CDD\|182461
NZ_AP023197.1\|WP_021556453.1\|3831431_3832409_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225114
NZ_AP023197.1\|WP_021556452.1\|3833639_3834011_+\|FliM/FliN-family-flagellar-motor-switch-protein	unknown	unknown	gnl\|CDD\|131533
NZ_AP023197.1\|WP_021556448.1\|3836931_3839025_+\|flagellar-biosynthesis-protein-FlhA	unknown	unknown	gnl\|CDD\|224217
NZ_AP023197.1\|WP_000973081.1\|3844048_3846493_+\|acyl-CoA-dehydrogenase-FadE	unknown	unknown	gnl\|CDD\|236528
NZ_AP023197.1\|WP_000729709.1\|3840849_3841110_+\|type-II-toxin-antitoxin-system-antitoxin-DinJ	unknown	unknown	gnl\|CDD\|225619
NZ_AP023197.1\|WP_000532698.1\|3846535_3847009_-\|C-lysozyme-inhibitor	unknown	unknown	gnl\|CDD\|182187
NZ_AP023197.1\|WP_089628370.1\|3843230_3843809_-\|D-sedoheptulose-7-phosphate-isomerase	unknown	unknown	gnl\|CDD\|179012
NZ_AP023197.1\|WP_021556451.1\|3834007_3834760_+\|flagellar-type-III-secretion-system-pore-protein-FliP	unknown	unknown	gnl\|CDD\|235566
NZ_AP023197.1\|WP_000615980.1\|3841112_3841391_+\|type-II-toxin-antitoxin-system-mRNA-interferase-toxin-YafQ	unknown	unknown	gnl\|CDD\|225583
NZ_AP023197.1\|WP_021556454.1\|3829424_3831071_-\|flagellar-M-ring-protein-FliF	unknown	unknown	gnl\|CDD\|235957
NZ_AP023197.1\|WP_021556449.1\|3835808_3836948_+\|flagellar-type-III-secretion-system-protein-FlhB	unknown	unknown	gnl\|CDD\|235569
NZ_AP023197.1\|WP_001225679.1\|3841546_3842287_+\|murein-L,D-transpeptidase	unknown	unknown	gnl\|CDD\|225577
NZ_AP023197.1\|WP_000029084.1\|3831075_3831417_-\|flagellar-hook-basal-body-complex-protein-FliE	unknown	unknown	gnl\|CDD\|376721
NZ_AP023197.1\|WP_000922510.1\|3832795_3833647_+\|FliM/FliN-family-flagellar-motor-switch-protein	unknown	unknown	gnl\|CDD\|376445

Protein	Function_ID	Function_description	E-value
NZ_AP023197.1\|WP_000056850.1\|3839890_3840640_-\|C40-family-peptidase	gnl\|CDD\|223862	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane].	4.42583e-42
NZ_AP023197.1\|WP_000333379.1\|3842257_3843025_-\|class-II-glutamine-amidotransferase	gnl\|CDD\|372525	pfam13230, GATase_4, Glutamine amidotransferases class-II. This family captures members that are not found in pfam00310.	1.1374e-145
NZ_AP023197.1\|WP_000958542.1\|3834762_3835035_+\|flagellar-type-III-secretion-system-protein-FliQ	gnl\|CDD\|224898	COG1987, FliQ, Flagellar biosynthesis pathway, component FliQ [Cell motility and secretion / Intracellular trafficking and secretion].	1.3006e-18
NZ_AP023197.1\|WP_001695458.1\|3848662_3849673_-\|sel1-repeat-family-protein	gnl\|CDD\|223861	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only].	1.01257e-39
NZ_AP023197.1\|WP_021556450.1\|3835036_3835819_+\|flagellar-biosynthetic-protein-FliR	gnl\|CDD\|224598	COG1684, FliR, Flagellar biosynthesis pathway, component FliR [Cell motility and secretion / Intracellular trafficking and secretion].	8.97246e-51
NZ_AP023197.1\|WP_001118038.1\|3847162_3847933_+\|2-oxoglutaramate-amidase	gnl\|CDD\|182461	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional.	0
NZ_AP023197.1\|WP_021556453.1\|3831431_3832409_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225114	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms].	5.3594e-124
NZ_AP023197.1\|WP_021556452.1\|3833639_3834011_+\|FliM/FliN-family-flagellar-motor-switch-protein	gnl\|CDD\|131533	TIGR02480, Flagellar_motor_switch_protein_FliN, flagellar motor switch protein FliN. Proteins that consist largely of the domain described by this model for this protein family can be designated flagellar motor switch protein FliN. Longer proteins in which this region is a C-terminal domain typically are designated FliY. More distantly related sequences, outside the scope of this family, are associated with type III secretion and include the surface presentation of antigens protein SpaO required or invasion of host cells by Salmonella enterica. [Cellular processes, Chemotaxis and motility].	2.6596e-21
NZ_AP023197.1\|WP_021556448.1\|3836931_3839025_+\|flagellar-biosynthesis-protein-FlhA	gnl\|CDD\|224217	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion].	0
NZ_AP023197.1\|WP_000973081.1\|3844048_3846493_+\|acyl-CoA-dehydrogenase-FadE	gnl\|CDD\|236528	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed.	0
NZ_AP023197.1\|WP_000729709.1\|3840849_3841110_+\|type-II-toxin-antitoxin-system-antitoxin-DinJ	gnl\|CDD\|225619	COG3077, RelB, DNA-damage-inducible protein J [DNA replication, recombination, and repair].	8.40561e-30
NZ_AP023197.1\|WP_000532698.1\|3846535_3847009_-\|C-lysozyme-inhibitor	gnl\|CDD\|182187	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional.	9.39999e-93
NZ_AP023197.1\|WP_089628370.1\|3843230_3843809_-\|D-sedoheptulose-7-phosphate-isomerase	gnl\|CDD\|179012	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase.	6.057e-142
NZ_AP023197.1\|WP_021556451.1\|3834007_3834760_+\|flagellar-type-III-secretion-system-pore-protein-FliP	gnl\|CDD\|235566	PRK05699, fliP, flagellar biosynthesis protein FliP; Reviewed.	2.17454e-107
NZ_AP023197.1\|WP_000615980.1\|3841112_3841391_+\|type-II-toxin-antitoxin-system-mRNA-interferase-toxin-YafQ	gnl\|CDD\|225583	COG3041, COG3041, Uncharacterized protein conserved in bacteria [Function unknown].	1.49001e-41
NZ_AP023197.1\|WP_021556454.1\|3829424_3831071_-\|flagellar-M-ring-protein-FliF	gnl\|CDD\|235957	PRK07193, fliF, flagellar MS-ring protein; Reviewed.	0
NZ_AP023197.1\|WP_021556449.1\|3835808_3836948_+\|flagellar-type-III-secretion-system-protein-FlhB	gnl\|CDD\|235569	PRK05702, flhB, flagellar type III secretion system protein FlhB.	3.22152e-157
NZ_AP023197.1\|WP_001225679.1\|3841546_3842287_+\|murein-L,D-transpeptidase	gnl\|CDD\|225577	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown].	1.07529e-116
NZ_AP023197.1\|WP_000029084.1\|3831075_3831417_-\|flagellar-hook-basal-body-complex-protein-FliE	gnl\|CDD\|376721	pfam02049, FliE, Flagellar hook-basal body complex protein FliE.	1.37988e-15
NZ_AP023197.1\|WP_000922510.1\|3832795_3833647_+\|FliM/FliN-family-flagellar-motor-switch-protein	gnl\|CDD\|376445	pfam01052, FliMN_C, Type III flagellar switch regulator (C-ring) FliN C-term. This family includes the C-terminal region of flagellar motor switch proteins FliN and FliM. It is associated with family FliM, pfam02154 and family FliN_N pfam16973.	3.55345e-05

>NZ_AP023197.1|WP_021556448.1|3836931_3839025_+|flagellar-biosynthesis-protein-FlhA
MAKTTKSFLALLRGGNLGVPLVILCILAMVILPLPPALLDILFTFNIVLAVMVLLVAVSAKRPLEFSLFPTILLITTLMRLTLNVASTRVVLLHGHLGAGAAGKVIESFGQVVIGGNFVVGFVVFIILMIINFIVVTKGAERISEVSARFTLDAMPGKQMAIDADLNAGLINQAQAQTRRKDVASEADFYGAMDGASKFVRGDAIAGMMILAINLIGGVCIGIFKYNLSADAAFQQYVLMTIGDGLVAQIPSLLLSTAAAIIVTRVSDNGDIAHDVRHQLLASPSVLYTATGIMFVLAVVPGMPHLPFLLFSALLGFTGWRMSKRPQAAEAEEKSLETLTRTITETSEQQVSWETIPLIEPISLSLGYKLVALVDKAQGNPLTQRIRGVRQVISDGNGVLLPEIRIRENFRLKPSQYAIFINGIKADEADIPADKLMALPSSETYGEIDGVLGNDPAYGMPVTWIQPAQKAKALNMGYQVIDSASVIATHVNKIVRSYIPDLFNYDDITQLHNRLSSMAPRLAEDLSAALNYSQLLKVYRTLLTEGVSLRDIVTIATVLVASSAVTKDHILLAADVRLALRRSITHPFVRKQELTVYTLNNELENLLTNVVNQAQQGGKVMLDSVPVDPNMLNQFQSTMPQVKEQMKAAGKDPVLLVPPQLRPLLARYARLFAPGLHVLSYNEVPDELELKIMGALM
>NZ_AP023197.1|WP_021556449.1|3835808_3836948_+|flagellar-type-III-secretion-system-protein-FlhB
MADSSSEEKTEKPSAQKLRKAREEGQLPRSKDMGLAASLFAAFVVISSSFPWYADFVRESFISVHQYAQEINNPQVIGQFLRHHLLILGKFILTLLPMPAAALLSSLVPGGWLFLPKKILPDFSKISPLKGIGRLFSSEHLAETGKMTVKSAVVLVMLWVSLRNNFTAFLGLQALPFKLAMNDGLSLYASVMRNFVILFIFFALLDVPLAKALFTKGLKMTKQELKEEYKNQEGKPEVKVRVRRLQRQMAMGKIRKVVPKANVVITNPTHYAVALQYDQSRAAAPFVVAKGTDEIALYIRQVAAENQVEVVEFPRLARSVYYTTQVNQQIPFQLYRAIAHVLTYVLQMKHWREGAQPRPALNRHISIPKEVLKLDGENN
>NZ_AP023197.1|WP_021556450.1|3835036_3835819_+|flagellar-biosynthetic-protein-FliR
MRASDVTQLMDLALGLWFPFVRIMAFLRYVPVLDNSALTVRVRIILSLALAIIITPLIPHPVPHDLLSLNSLILTVEQILWGMLFGLMFQFLFLALQLAGQILSFNMGMSMAVMNDPSSGASTTVLAELINVYAILLFFAMDGHLLLVSVLYKGFTYWPIGNALHPQTLRTIALAFSWVLASASLLALPTTFIMLIVQGCFGLLNRIAPPLNLFSLGFPINMLAGLVCFATLLYNLPDHYLHLANFVLQQLDALKGHYGG
>NZ_AP023197.1|WP_000958542.1|3834762_3835035_+|flagellar-type-III-secretion-system-protein-FliQ
MLTVDVAADIVASGIKVVILLVSVLVVPSLLVGLLVSVFQAVTQINEQTLSFLPRLIVTLVVLGVCGKWMIIQLHDLCIHLFTQAALLVH
>NZ_AP023197.1|WP_021556451.1|3834007_3834760_+|flagellar-type-III-secretion-system-pore-protein-FliP
MKRRTQLTLGLGLLALAPLAIAQGGDIALLNVVTHGNTQEYSVKIQVLILMTLVGLLPTMVLMMTCFTRFIIVLSLLRQALGLQQTPPNRILIGIALSLTMLVMRPIWLNIYDHAVVPFENDRISLTDALSTAATPLKRFMLAQTDKKAMAQIMTIGGAKGNAADQDLSIVVPAYVLSELKTAFQIGFMIYIPFLVIDLIVASVLMAMGMMMLSPLIVSLPFKLMLFVLIDGWSLTIGTLTTSIRGLGLG
>NZ_AP023197.1|WP_021556452.1|3833639_3834011_+|FliM/FliN-family-flagellar-motor-switch-protein
MSKQEDILAGDFNLTDEAVPTMKSPDAETLVTRLEDRFSDSMTLLKRIPVTLTLEVSSVEIMLADLLNIDDDTVIELDKLAGEPLDIKVNNILLGKAEVVVVNEKYGLRVLEFNTRDINDLAP
>NZ_AP023197.1|WP_000922510.1|3832795_3833647_+|FliM/FliN-family-flagellar-motor-switch-protein
MLKYSKTPGIFKLEGNRLGRPYHRLPTLFTGNFDVIDSHLGSYFLKKHRSNITLKKIGCEMDIINKNAELMVSQVGHLAFDIDRSLLLMLLGNFYGLESSLEEAKAHNGLPTKTETRLKNRLALDICTLIFNLQTSGIALKLKLDSSTVITHWAYQLTFTLAGDEESSFRILLDDAHTDFILNLIRHSEHSKPQQVAKSVNKPALIKEIIRSLPLTLNVKIAELSMNVADLAQIKAGDILPISLGETFPVAIGQSELFSALIVEDKDKLFLSELAGKNENSHE
>NZ_AP023197.1|WP_021556453.1|3831431_3832409_-|sigma-54-dependent-Fis-family-transcriptional-regulator
MSELIATAASSINAFTLAKRVAAFNVPVLIQGETGAGKECVAKYIHTVAFGENDNAPYIGVNCAAIPENMLEATLFGYDKGAFTGAIASVPGKMELANNGTLLLDEIGDMPLALQAKILRVLQEQQVERLGSNRQIKLNFRLIACTNKNLEQEVAAGRFREDLYYRLAVIPITMPPLRERLNDIIPLAESFIKKYSTVLVKNITLSESTRRALLNYRWPGNVRQLENAIQRGMILNRDGVIYPDALGLPENDVADRSELQWPAVNIAETSDLGQHGRSAQYQYIADLMRKYQGNRSKIADLLGITPRALRYRLASMRKQGIEVFS
>NZ_AP023197.1|WP_000029084.1|3831075_3831417_-|flagellar-hook-basal-body-complex-protein-FliE
MSITTINSTMQAQIMQDVQRMQANAQAPVLPAMTFSSTDPDVSFNRIMQGALGHVDQFQQVAEQQQTAIDLGKSDDLAGAMIASQQASLSFSALVQVRNKIATGFNDLMSMSI
>NZ_AP023197.1|WP_021556454.1|3829424_3831071_-|flagellar-M-ring-protein-FliF
MNAQIKKLTQAFPAFRLRLADNKRWALMAGVGLAVAATAIIVSVLWTGNRGYVSLYGRQENLPVSQIVTVLDGEKLTYRIDPQSGQILVPEDELSKTRMTLAAKGVQAILPSGYELMDKDEVLGSSQFVQNVRYKRSLEGELAQSIMSLDAVESARVHLALNEESSFVVSDVPQNSASVVVRLHYGAKLNMDQVNAIVHLVSGSIPGLQASKVSVVDQAGNLLTDGIGAGEAVSAATRKRDQILKDIQDKTRASVANVLDSLVGSGNYRVSVMPDLDLSTIDETQEHYGDAPKINREESVLDSDTNQVAMGVPGSLSNRPPVAANQMTNGTEENRSPEALSKHSESKRDYSYDRSVQHIQHPGFAVKRLNVAVVLNQNAPALKNWKPEQTTQLTALLNNAAGIDAQRGDNLTLSLLNFVPQVAPVEPVIPLWKDDSVLAWVRLIGCGLLALLLLFFVVRPLMKRLTAVRAPVITPEPEAVSEPWIATPEDERKNVDLPSLPGDDSLPSQSSGLEVKLEFLQKLAMSDTDRVAEVLRQWITSNERIDNK
>NZ_AP023197.1|WP_000056850.1|3839890_3840640_-|C40-family-peptidase
MSLPSIPSFVLSGLLLICLPFSSFASATTSHISFSYAARQRMQNRARLLKQYQTHLKKQASYIVEGNAESRRALRQHNREQIKQHPEWFPAPLKASDRRWQALAENNHFLSSDHLHNITEVAIHRLEQQLGKPYVWGGTRPDKGFDCSGLVFYAYNKILEAKLPRTANEMYHYHRATIVANNDLRRGDLLFFHIHSREIADHMGVYLGDGQFIESPRTGETIRVSRLAEPFWQDHFLGARRILTEETIL
>NZ_AP023197.1|WP_000729709.1|3840849_3841110_+|type-II-toxin-antitoxin-system-antitoxin-DinJ
MAANAFVRARIDEDLKNQAADVLAGMGLTISDLVRITLTKVAREKALPFDLREPNQLTIQSIKNSEAGVGVHKAKDADDLFDKLGI
>NZ_AP023197.1|WP_000615980.1|3841112_3841391_+|type-II-toxin-antitoxin-system-mRNA-interferase-toxin-YafQ
MIQRDIEYSGQFSKDVKLAQKRHKDMNKLKYLMTLLINNTLPLPAVYKDHPLQGSWKGYRDAHVEPDWLLIYKLTDKLLRFERTGTHAALFG
>NZ_AP023197.1|WP_001225679.1|3841546_3842287_+|murein-L,D-transpeptidase
MRKIALILAMLLIPCVSFAGLLGSSSSTTPVSKEYKQQLMGSPVYIQIFKEERTLDLYVKMGEQYQLLDSYKICKYSGGLGPKQRQGDFKSPEGFYSVQRNQLKPDSRYYKAINIGFPNAYDRAHGYEGKYLMIHGDCVSIGCYAMTNQGIDEIFQFVTGALVFGQPSVQVSIYPFRMTDANMKRHKYSNFKDFWEQLKPGYDYFEQTRKPPTVSVVNGRYVVSKPLSHEVVQPQLASNYTLPEAK
>NZ_AP023197.1|WP_000333379.1|3842257_3843025_-|class-II-glutamine-amidotransferase
MCELLGMSANVPTDICFSFTGLVQRGGGTGPHKDGWGITFYEGKGCRTFKDPQPSFNSPIAKLVQDYPIKSCSVVAHIRQANRGEVALENTHPFTRELWGRNWTYAHNGQLTGYKSLETGNFRPVGETDSEKAFCWLLHKLTQRYPRTPGNMAAVFKYIASLADELRAKGVFNMLLSDGRYVMAYCSTNLHWITRRAPFGVATLLDQDVEIDFSSQTTPNDVVTVIATQPLTGNETWQKIMPGEWRLFCLGERVV
>NZ_AP023197.1|WP_089628370.1|3843230_3843809_-|D-sedoheptulose-7-phosphate-isomerase
MYQDLIRNELNEAAETLANFLKDDANIHAIQRAAVLLADSFKAGGKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHISCVGNDFGFNDIFSRYVEAVGREGDVLLGISTSGNSANVIKAIAVAREKGMKVITLTGKDGGKMAGTADIEIRVPHFGYADRIQEIHIKVIHILIQLIEKEMVK
>NZ_AP023197.1|WP_000973081.1|3844048_3846493_+|acyl-CoA-dehydrogenase-FadE
MMILSILATVVLLGALFYHRVSLFISSLILLAWTAALGVAGLWSAWVLVPLAIILVPFNFAPMRKSMISAPVFRGFRKVMPPMSRTEKEAIDAGTTWWEGDLFQGKPDWKKLHNYPQPRLTAEEQAFLDGPVEEACRMANDFQITHELADLPPELWAYLKEHRFFAMIIKKEYGGLEFSAYAQSRVLQKLSGVSGILAITVGVPNSLGPGELLQHYGTDEQKDHYLPRLARGQEIPCFALTSPEAGSDAGAIPDTGIVCMGEWQGQQVLGMRLTWNKRYITLAPIATVLGLAFKLSDPEKLLGGAEDLGITCALIPTTTPGVEIGRRHFPLNVPFQNGPTRGKDVFVPIDYIIGGPKMAGQGWRMLVECLSVGRGITLPSNSTGGVKSVALATGAYAHIRRQFKISIGKMEGIEEPLARIAGNAYVMDAAASLITYGIMLGEKPAVLSAIVKYHCTHRGQQSIIDAMDITGGKGIMLGQSNFLARAYQGAPIAITVEGANILTRSMMIFGQGAIRCHPYVLEEMEAAKNNDVNAFDKLLFKHIGHVGSNKVRSFWLGLTRGLTSSTPTGDATKRYYQHLNRLSANLALLSDVSMAVLGGSLKRRERISARLGDILSQLYLASAVLKRYDDEGRNEADLPLVHWGVQDALYQAEQAMDDLLQNFPNRVVAGLLNVVIFPTGRHYLAPSDKLDHKVAKILQVPNATRSRIGRGQYLTPSEHNPVGLLEEALVDVIAADPIHQRICKELGKNLPFTRLDELAHNALAKGLIDKDEAAILVKAEESRLRSINVDDFDPEELATKPVKLPEKVRKVEAA
>NZ_AP023197.1|WP_000532698.1|3846535_3847009_-|C-lysozyme-inhibitor
MGRISSGGMMFKAITTVAALVIATSAMAQDDLTISSLAKGETTKAAFNQMVQGHKLPAWVMKGGTYTPAQTVTLGDETYQVMSACKPHDCGSQRIAVMWSEKSNQMTGLFSTIDEKTSQEKLTWLNVNDALSIDGKTVLFAALTGSLENHPDGFNFK
>NZ_AP023197.1|WP_001118038.1|3847162_3847933_+|2-oxoglutaramate-amidase
MPGLKITLLQQPLVWMDGPANLRHFDRQLEGITGRDVIVLPEMFTSGFAMEAAASSLAQDDVVNWMTAKAQQCNALIAGSVALQTESGSVNRFLLVEPGGTVHFYDKRHLFRMADEHLHYKAGNARVIVEWRGWRILPLVCYDLRFPVWSRNLNDYDLALYVANWPAPRSLHWQALLTARAIENQAYVAGCNRVGSDGNGCHYRGDSRVINPQGEIIATADAHQATRIDAELSMAVLREYRDKFPAWRDADEFRLR
>NZ_AP023197.1|WP_001695458.1|3848662_3849673_-|sel1-repeat-family-protein
MPIKNNRKILMCVVVMFFFEVLSIPVAIGVTEDTAASNKMTYIRKDADKGDATAQFKLAELYRSGSEGIQSYKDAVYWYSLAAKQGLTEAQYNLGVMYAHGYGVSQNYEKAFECYQMAAEKGFPEAQGNLGVLYSKGSGVIRDYGKAIAWLNKAANSGLVTAQTNLALLYDETNKKDLADKWYRIAAEQGDKVAQYHLGRLYYEGVIIKKDYNKAAFWYDKSASQGFIKAQSALSIFYYEGLGGITVNKYKAIELLRKSATHGDPVAQHNLALIYSVGTKELPLDNKKAYAWFSAAYAHGLDKSVQYKLKMENRLTPEEFEKARILSKEYIEKYKN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_AP023197_7	7.1\|2863006\|40\|NZ_AP023197\|CRISPRCasFinder	2863006-2863045	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	1	0.975
NZ_AP023197_6	6.1\|2209027\|38\|NZ_AP023197\|CRISPRCasFinder	2209027-2209064	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
NZ_AP023197_3	3.14\|1074315\|32\|NZ_AP023197\|CRISPRCasFinder	1074315-1074346	32	LC542972	Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence	246937-246968	4	0.875
NZ_AP023197_9	9.1\|3839150\|41\|NZ_AP023197\|CRISPRCasFinder	3839150-3839190	41	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4034-4074	4	0.902
NZ_AP023197_9	9.1\|3839150\|41\|NZ_AP023197\|CRISPRCasFinder	3839150-3839190	41	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4033-4073	4	0.902
NZ_AP023197_9	9.1\|3839150\|41\|NZ_AP023197\|CRISPRCasFinder	3839150-3839190	41	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4033-4073	4	0.902
NZ_AP023197_9	9.1\|3839150\|41\|NZ_AP023197\|CRISPRCasFinder	3839150-3839190	41	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4033-4073	4	0.902
NZ_AP023197_3	3.8\|1073949\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073949-1073980	32	NZ_CP026928	Agrobacterium tumefaciens strain 1D1609 plasmid pAt1D1609b, complete sequence	178437-178468	6	0.812
NZ_AP023197_2	2.3\|1047642\|32\|NZ_AP023197\|CRISPRCasFinder,CRT	1047642-1047673	32	MT110073	Stenotrophomonas phage vB_SmaS_DLP_3, complete genome	39410-39441	7	0.781
NZ_AP023197_3	3.1\|1073522\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073522-1073553	32	NC_015979	Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence	3574-3605	7	0.781
NZ_AP023197_3	3.1\|1073522\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073522-1073553	32	MT939487	Erwinia phage pEa_SNUABM_47, complete genome	319145-319176	7	0.781
NZ_AP023197_3	3.1\|1073522\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073522-1073553	32	MT939486	Erwinia phage pEa_SNUABM_12, complete genome	344727-344758	7	0.781
NZ_AP023197_3	3.1\|1073522\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073522-1073553	32	NC_041917	Serratia phage BF, complete genome	321570-321601	7	0.781
NZ_AP023197_3	3.1\|1073522\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073522-1073553	32	MT939488	Erwinia phage pEa_SNUABM_50, complete genome	320284-320315	7	0.781
NZ_AP023197_3	3.1\|1073522\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073522-1073553	32	NZ_CP016791	Bacillus flexus strain KLBMP 4941 plasmid unnamed1, complete sequence	79540-79571	7	0.781
NZ_AP023197_3	3.1\|1073522\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073522-1073553	32	KJ019094	Synechococcus phage ACG-2014e isolate Syn7803US33, complete genome	11419-11450	7	0.781
NZ_AP023197_3	3.1\|1073522\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073522-1073553	32	KJ019156	Synechococcus phage ACG-2014e isolate Syn7803C2, complete genome	11419-11450	7	0.781
NZ_AP023197_3	3.1\|1073522\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073522-1073553	32	KJ019054	Synechococcus phage ACG-2014e isolate Syn7803C85, complete genome	11419-11450	7	0.781
NZ_AP023197_3	3.1\|1073522\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073522-1073553	32	KJ019082	Synechococcus phage ACG-2014i isolate Syn7803US120, complete genome	11392-11423	7	0.781
NZ_AP023197_3	3.8\|1073949\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073949-1073980	32	NZ_CP032348	Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence	437767-437798	7	0.781
NZ_AP023197_3	3.8\|1073949\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073949-1073980	32	NZ_CP020952	Rhizobium sp. CIAT894 plasmid pRheCIAT894e, complete sequence	675006-675037	7	0.781
NZ_AP023197_3	3.14\|1074315\|32\|NZ_AP023197\|CRISPRCasFinder	1074315-1074346	32	NZ_CP015038	Burkholderia cenocepacia strain 895 plasmid pBcp895-1, complete sequence	112768-112799	7	0.781
NZ_AP023197_9	9.1\|3839150\|41\|NZ_AP023197\|CRISPRCasFinder	3839150-3839190	41	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4135-4175	7	0.829
NZ_AP023197_9	9.1\|3839150\|41\|NZ_AP023197\|CRISPRCasFinder	3839150-3839190	41	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4134-4174	7	0.829
NZ_AP023197_9	9.1\|3839150\|41\|NZ_AP023197\|CRISPRCasFinder	3839150-3839190	41	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4134-4174	7	0.829
NZ_AP023197_9	9.1\|3839150\|41\|NZ_AP023197\|CRISPRCasFinder	3839150-3839190	41	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4134-4174	7	0.829
NZ_AP023197_9	9.1\|3839150\|41\|NZ_AP023197\|CRISPRCasFinder	3839150-3839190	41	NZ_CP044308	Escherichia coli strain C27A plasmid pC27A-3, complete sequence	115775-115815	7	0.829
NZ_AP023197_3	3.1\|1073522\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073522-1073553	32	MN698239	Pelagibacter phage HTVC023P, complete genome	3203-3234	8	0.75
NZ_AP023197_3	3.5\|1073766\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073766-1073797	32	NZ_LR594660	Variovorax sp. PBL-H6 plasmid 2	810707-810738	8	0.75
NZ_AP023197_3	3.5\|1073766\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073766-1073797	32	NZ_LR594667	Variovorax sp. SRS16 plasmid 2	27451-27482	8	0.75
NZ_AP023197_3	3.5\|1073766\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073766-1073797	32	NZ_LR594690	Variovorax sp. WDL1 plasmid 2	27451-27482	8	0.75
NZ_AP023197_3	3.5\|1073766\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073766-1073797	32	NZ_LR594672	Variovorax sp. PBL-E5 plasmid 2	27451-27482	8	0.75
NZ_AP023197_3	3.8\|1073949\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073949-1073980	32	NZ_AP022593	Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence	4024290-4024321	8	0.75
NZ_AP023197_3	3.8\|1073949\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073949-1073980	32	NZ_CP015988	Sphingobium sp. EP60837 plasmid pEP1, complete sequence	185820-185851	8	0.75
NZ_AP023197_3	3.13\|1074254\|32\|NZ_AP023197\|CRISPRCasFinder,CRT	1074254-1074285	32	NZ_AP018516	Acetobacter orientalis strain FAN1 plasmid pAOF1, complete sequence	48296-48327	8	0.75
NZ_AP023197_3	3.14\|1074315\|32\|NZ_AP023197\|CRISPRCasFinder	1074315-1074346	32	NZ_AP014705	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence	1428097-1428128	8	0.75
NZ_AP023197_3	3.1\|1073522\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073522-1073553	32	NC_018141	Legionella pneumophila subsp. pneumophila plasmid pLELO, complete sequence	82718-82749	9	0.719
NZ_AP023197_3	3.1\|1073522\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073522-1073553	32	NZ_CP045305	Legionella longbeachae strain B1445CHC plasmid pB1445CHC_150k, complete sequence	71334-71365	9	0.719
NZ_AP023197_3	3.1\|1073522\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073522-1073553	32	NZ_CP025492	Legionella sainthelensi strain LA01-117 plasmid pLA01-117_150k, complete sequence	4748-4779	9	0.719
NZ_AP023197_3	3.1\|1073522\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073522-1073553	32	NZ_CP021284	Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed1, complete sequence	76052-76083	9	0.719
NZ_AP023197_3	3.1\|1073522\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073522-1073553	32	NZ_CP042253	Legionella longbeachae strain B3526CHC plasmid pB3526CHC_150k, complete sequence	73522-73553	9	0.719
NZ_AP023197_3	3.1\|1073522\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073522-1073553	32	NZ_CP011106	Legionella pneumophila strain L10-023 isolate Ulm plasmid unnamed, complete sequence	72933-72964	9	0.719
NZ_AP023197_3	3.8\|1073949\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073949-1073980	32	NZ_CP013600	Rhizobium sp. N741 plasmid pRspN741e, complete sequence	33695-33726	9	0.719
NZ_AP023197_3	3.8\|1073949\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073949-1073980	32	NZ_CP013504	Rhizobium esperanzae strain N561 plasmid pRspN561d, complete sequence	33695-33726	9	0.719
NZ_AP023197_3	3.8\|1073949\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073949-1073980	32	NZ_CP013510	Rhizobium sp. N1341 plasmid pRspN1341e, complete sequence	33695-33726	9	0.719
NZ_AP023197_3	3.8\|1073949\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073949-1073980	32	NZ_CP013521	Rhizobium sp. N113 plasmid pRspN113d, complete sequence	33695-33726	9	0.719
NZ_AP023197_3	3.8\|1073949\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073949-1073980	32	NZ_CP013494	Rhizobium sp. N6212 plasmid pRspN6212d, complete sequence	33695-33726	9	0.719
NZ_AP023197_3	3.8\|1073949\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073949-1073980	32	NZ_CP013594	Rhizobium sp. N871 plasmid pRspN871d, complete sequence	33695-33726	9	0.719
NZ_AP023197_3	3.8\|1073949\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073949-1073980	32	NZ_CP017076	Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence	185838-185869	9	0.719
NZ_AP023197_3	3.8\|1073949\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073949-1073980	32	NZ_CP032325	Azospirillum brasilense strain MTCC4035 plasmid p4, complete sequence	545910-545941	9	0.719
NZ_AP023197_3	3.8\|1073949\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073949-1073980	32	NC_012520	Rhodococcus opacus B4 plasmid pROB01, complete sequence	122792-122823	9	0.719
NZ_AP023197_3	3.8\|1073949\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073949-1073980	32	NZ_CP029831	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed7, complete sequence	312084-312115	9	0.719
NZ_AP023197_3	3.8\|1073949\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073949-1073980	32	NC_016624	Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence	436317-436348	9	0.719
NZ_AP023197_3	3.8\|1073949\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073949-1073980	32	NZ_CP035513	Haematobacter massiliensis strain OT1 plasmid pOT1-3, complete sequence	2687-2718	9	0.719
NZ_AP023197_3	3.9\|1074010\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1074010-1074041	32	NC_027120	Lactococcus phage 1358, complete sequence	26158-26189	9	0.719
NZ_AP023197_3	3.14\|1074315\|32\|NZ_AP023197\|CRISPRCasFinder	1074315-1074346	32	NZ_CP017563	Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence	141278-141309	9	0.719
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229083-229131	9	0.816
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229184-229232	9	0.816
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229285-229333	9	0.816
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239577-239625	9	0.816
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239678-239726	9	0.816
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239779-239827	9	0.816
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230489-230537	9	0.816
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230590-230638	9	0.816
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230691-230739	9	0.816
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211459-211507	9	0.816
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211560-211608	9	0.816
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211661-211709	9	0.816
NZ_AP023197_5	5.1\|1978049\|48\|NZ_AP023197\|CRISPRCasFinder	1978049-1978096	48	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	210148-210195	9	0.812
NZ_AP023197_8	8.1\|3070447\|32\|NZ_AP023197\|CRISPRCasFinder	3070447-3070478	32	NZ_CP045060	Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p1, complete sequence	9736-9767	9	0.719
NZ_AP023197_8	8.1\|3070447\|32\|NZ_AP023197\|CRISPRCasFinder	3070447-3070478	32	NZ_CP045053	Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p1, complete sequence	9737-9768	9	0.719
NZ_AP023197_8	8.1\|3070447\|32\|NZ_AP023197\|CRISPRCasFinder	3070447-3070478	32	NZ_CP045057	Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p1, complete sequence	9736-9767	9	0.719
NZ_AP023197_8	8.2\|3070507\|33\|NZ_AP023197\|CRISPRCasFinder	3070507-3070539	33	MN855903	Myoviridae sp. isolate 490, partial genome	4171-4203	9	0.727
NZ_AP023197_8	8.3\|3070455\|32\|NZ_AP023197\|PILER-CR	3070455-3070486	32	NZ_CP045060	Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p1, complete sequence	9736-9767	9	0.719
NZ_AP023197_8	8.3\|3070455\|32\|NZ_AP023197\|PILER-CR	3070455-3070486	32	NZ_CP045053	Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p1, complete sequence	9737-9768	9	0.719
NZ_AP023197_8	8.3\|3070455\|32\|NZ_AP023197\|PILER-CR	3070455-3070486	32	NZ_CP045057	Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p1, complete sequence	9736-9767	9	0.719
NZ_AP023197_8	8.4\|3070515\|33\|NZ_AP023197\|PILER-CR	3070515-3070547	33	MN855903	Myoviridae sp. isolate 490, partial genome	4171-4203	9	0.727
NZ_AP023197_3	3.1\|1073522\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073522-1073553	32	NC_049439	Salmonella phage SenASZ3, complete genome	153466-153497	10	0.688
NZ_AP023197_3	3.1\|1073522\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073522-1073553	32	MN871502	UNVERIFIED: Salmonella phage SeHz-1, complete genome	51653-51684	10	0.688
NZ_AP023197_3	3.1\|1073522\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073522-1073553	32	MT974436	Salmonella phage ISTP3, complete genome	77052-77083	10	0.688
NZ_AP023197_3	3.1\|1073522\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073522-1073553	32	MN342150	Escherichia phage vB_EcoM_3HA11, complete genome	51786-51817	10	0.688
NZ_AP023197_3	3.1\|1073522\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073522-1073553	32	MN871493	UNVERIFIED: Salmonella phage Se-E, complete genome	31188-31219	10	0.688
NZ_AP023197_3	3.1\|1073522\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073522-1073553	32	LR811967	Salmonella phage Se_EM1 genome assembly, chromosome: 1	46327-46358	10	0.688
NZ_AP023197_3	3.1\|1073522\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073522-1073553	32	NC_016073	Salmonella phage SFP10, complete genome	75568-75599	10	0.688
NZ_AP023197_3	3.1\|1073522\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073522-1073553	32	MT074477	Salmonella phage barely, complete genome	63254-63285	10	0.688
NZ_AP023197_3	3.1\|1073522\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073522-1073553	32	MT074476	Salmonella phage kage, complete genome	60352-60383	10	0.688
NZ_AP023197_3	3.1\|1073522\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073522-1073553	32	MN871491	UNVERIFIED: Salmonella phage Se-B, complete genome	147678-147709	10	0.688
NZ_AP023197_3	3.1\|1073522\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073522-1073553	32	NC_027119	Salmonella phage Det7, complete genome	38721-38752	10	0.688
NZ_AP023197_3	3.1\|1073522\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073522-1073553	32	MT074474	Salmonella phage aagejoakim, complete genome	62047-62078	10	0.688
NZ_AP023197_3	3.1\|1073522\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073522-1073553	32	KY000003	Salmonella phage STP07, complete genome	97022-97053	10	0.688
NZ_AP023197_3	3.1\|1073522\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073522-1073553	32	MT074478	Salmonella phage moki, complete genome	60746-60777	10	0.688
NZ_AP023197_3	3.1\|1073522\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073522-1073553	32	KC139524	Salmonella phage FSL SP-063 baseplate hub subunit and tail lysozyme, baseplate wedge subunit, hypothetical proteins, ribonucleotide reductase B subunit, hypothetical protein, ribonucleoside-diphosphate reductase subunit alpha, phosphate starvation-inducible protein, hypothetical proteins, DNA primase, hypothetical proteins, recombination endonuclease subunit, endonuclease subunit, RNA polymerase sigma factor, ribonuclease H, hypothetical protein, ATP-dependent helicase, DNA-binding HU protein, hypothetical proteins, putative membrane protein, hypothetical proteins, acyl carrier protein, hypothetical proteins, translation repressor protein, clamp loader subunit, clamp loader small subunit, sliding clamp, hypothetical protein, helicase, exonuclease, hypothetical protein, tail completion protein, hypothetical proteins, major capsid protein, prohead core protein, prohead core scaffolding protein and protease, hypothetical proteins, portal vertex protein, tail tube protein, GIY-YIG endonuclease, hypothetical protein, tail sheath protein, large terminase protein, hypothetical protein, tail sheath stabilizer and completion protein, neck protein, hypothetical protein, neck protein, hypothetical proteins, tail spike protein, and hypothetical protein genes, complete cds	28326-28357	10	0.688
NZ_AP023197_3	3.1\|1073522\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073522-1073553	32	MN445184	Escherichia phage vB_EcoA_4HA11, complete genome	74282-74313	10	0.688
NZ_AP023197_3	3.1\|1073522\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073522-1073553	32	NC_049495	Salmonella phage Se-B, complete genome	147678-147709	10	0.688
NZ_AP023197_3	3.1\|1073522\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073522-1073553	32	MH523359	Salmonella phage vB_SalM-LPST94, complete genome	147813-147844	10	0.688
NZ_AP023197_3	3.1\|1073522\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073522-1073553	32	MT074475	Salmonella phage dinky, complete genome	60443-60474	10	0.688
NZ_AP023197_3	3.1\|1073522\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073522-1073553	32	MN871492	UNVERIFIED: Salmonella phage Se-D, complete genome	146578-146609	10	0.688
NZ_AP023197_3	3.1\|1073522\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073522-1073553	32	MH709120	Salmonella phage SeSz-3, complete genome	153466-153497	10	0.688
NZ_AP023197_3	3.1\|1073522\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073522-1073553	32	MT074470	Salmonella phage heyday, complete genome	62581-62612	10	0.688
NZ_AP023197_3	3.1\|1073522\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073522-1073553	32	KX171211	Salmonella phage vB_SenM-2, complete genome	38721-38752	10	0.688
NZ_AP023197_3	3.1\|1073522\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073522-1073553	32	NC_049508	Salmonella phage maane, complete genome	61796-61827	10	0.688
NZ_AP023197_3	3.1\|1073522\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073522-1073553	32	MT074479	Salmonella phage pertopsoe, complete genome	63623-63654	10	0.688
NZ_AP023197_3	3.1\|1073522\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073522-1073553	32	NC_031045	Salmonella phage GG32, complete genome	112725-112756	10	0.688
NZ_AP023197_3	3.2\|1073583\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073583-1073614	32	NZ_CP049158	Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence	990416-990447	10	0.688
NZ_AP023197_3	3.2\|1073583\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073583-1073614	32	NZ_CP049318	Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence	995096-995127	10	0.688
NZ_AP023197_3	3.2\|1073583\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073583-1073614	32	NZ_CP040452	Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence	1461655-1461686	10	0.688
NZ_AP023197_3	3.8\|1073949\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073949-1073980	32	NZ_CP017325	Xanthomonas campestris pv. campestris str. CN15 plasmid unnamed1, complete sequence	7790-7821	10	0.688
NZ_AP023197_3	3.8\|1073949\|32\|NZ_AP023197\|PILER-CR,CRISPRCasFinder,CRT	1073949-1073980	32	NZ_CP017318	Xanthomonas campestris pv. campestris str. CN14 plasmid unnamed, complete sequence	43465-43496	10	0.688
NZ_AP023197_3	3.10\|1074071\|32\|NZ_AP023197\|CRISPRCasFinder,CRT	1074071-1074102	32	NZ_KT282968	Escherichia coli strain EC012 plasmid pEC012, complete sequence	3967-3998	10	0.688
NZ_AP023197_3	3.10\|1074071\|32\|NZ_AP023197\|CRISPRCasFinder,CRT	1074071-1074102	32	NZ_CP019244	Escherichia coli strain Combat2C1 plasmid pCombat2C1-1, complete sequence	3893-3924	10	0.688
NZ_AP023197_3	3.10\|1074071\|32\|NZ_AP023197\|CRISPRCasFinder,CRT	1074071-1074102	32	MH579767	Salmonella enterica subsp. enterica serovar Typhi strain SAL-18-0989 isolate B plasmid pSTY-blaCTX-M-65, complete sequence	82560-82591	10	0.688
NZ_AP023197_3	3.10\|1074071\|32\|NZ_AP023197\|CRISPRCasFinder,CRT	1074071-1074102	32	LN735558	Escherichia coli plasmid pC193, complete sequence, strain C193	3967-3998	10	0.688
NZ_AP023197_3	3.10\|1074071\|32\|NZ_AP023197\|CRISPRCasFinder,CRT	1074071-1074102	32	LN735559	Escherichia coli plasmid pM105, complete sequence, strain M105	3967-3998	10	0.688
NZ_AP023197_3	3.10\|1074071\|32\|NZ_AP023197\|CRISPRCasFinder,CRT	1074071-1074102	32	LN735560	Escherichia coli plasmid pV408, complete sequence, strain V408	3967-3998	10	0.688
NZ_AP023197_3	3.10\|1074071\|32\|NZ_AP023197\|CRISPRCasFinder,CRT	1074071-1074102	32	LN735561	Escherichia coli plasmid pC271, complete sequence, strain C271	3967-3998	10	0.688
NZ_AP023197_3	3.10\|1074071\|32\|NZ_AP023197\|CRISPRCasFinder,CRT	1074071-1074102	32	NZ_CP047578	Escherichia coli strain 94EC plasmid p94EC-2, complete sequence	3559-3590	10	0.688
NZ_AP023197_3	3.10\|1074071\|32\|NZ_AP023197\|CRISPRCasFinder,CRT	1074071-1074102	32	NZ_CP047572	Escherichia coli strain 2EC1 plasmid p2EC1-1, complete sequence	3559-3590	10	0.688
NZ_AP023197_3	3.10\|1074071\|32\|NZ_AP023197\|CRISPRCasFinder,CRT	1074071-1074102	32	NZ_MG545910	Escherichia coli strain EC014 plasmid pEC014, complete sequence	3967-3998	10	0.688
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229386-229434	10	0.796
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239880-239928	10	0.796
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230792-230840	10	0.796
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211762-211810	10	0.796
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	14196-14244	10	0.796
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_CP044147	Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2	7442-7490	11	0.776
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	CP044351	Escherichia coli strain 194195 plasmid p194195_1, complete sequence	84266-84314	11	0.776
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	194003-194051	11	0.776
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	194096-194144	11	0.776
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	194282-194330	11	0.776
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	204497-204545	11	0.776
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	204590-204638	11	0.776
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	204776-204824	11	0.776
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	195331-195379	11	0.776
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	195424-195472	11	0.776
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	195610-195658	11	0.776
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	176286-176334	11	0.776
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	176379-176427	11	0.776
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	176565-176613	11	0.776
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	40381-40429	11	0.776
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_AP023209	Escherichia coli strain TUM18781 plasmid pMTY18781-4, complete sequence	19389-19437	11	0.776
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	211730-211778	12	0.755
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	211930-211978	12	0.755
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	194189-194237	12	0.755
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	222224-222272	12	0.755
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	222424-222472	12	0.755
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	204683-204731	12	0.755
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	213058-213106	12	0.755
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	213258-213306	12	0.755
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	195517-195565	12	0.755
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	194013-194061	12	0.755
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	194213-194261	12	0.755
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	176472-176520	12	0.755
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	51834-51882	12	0.755
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_AP023207	Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence	27994-28042	12	0.755
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_AP023207	Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence	31299-31347	12	0.755
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	6859-6907	12	0.755
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	27282-27330	12	0.755
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	27381-27429	12	0.755
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	11511-11559	12	0.755
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	386508-386556	12	0.755
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	404133-404181	12	0.755
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	MG065691	UNVERIFIED: Campylobacter phage A11a, complete genome	33059-33107	12	0.755
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	MG065686	UNVERIFIED: Campylobacter phage A18a, complete genome	141016-141064	12	0.755
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	MF374379	Escherichia phage DN1, complete genome	31158-31206	12	0.755
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	MT230112	Escherichia coli strain DH5alpha plasmid pESBL112, complete sequence	94-142	12	0.755
NZ_AP023197_9	9.1\|3839150\|41\|NZ_AP023197\|CRISPRCasFinder	3839150-3839190	41	NZ_CP044147	Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2	6765-6805	12	0.707
NZ_AP023197_9	9.1\|3839150\|41\|NZ_AP023197\|CRISPRCasFinder	3839150-3839190	41	CP044351	Escherichia coli strain 194195 plasmid p194195_1, complete sequence	83611-83651	12	0.707
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	14105-14153	13	0.735
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	82842-82890	13	0.735
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	397088-397136	13	0.735
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	MG065691	UNVERIFIED: Campylobacter phage A11a, complete genome	63889-63937	13	0.735
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	MG065686	UNVERIFIED: Campylobacter phage A18a, complete genome	110186-110234	13	0.735
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NC_049343	Escherichia phage 500465-2, complete genome	31797-31845	13	0.735
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	102544-102592	14	0.714
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_CP019246	Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence	40305-40353	14	0.714
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	313592-313640	15	0.694
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_CP044308	Escherichia coli strain C27A plasmid pC27A-3, complete sequence	56031-56079	15	0.694
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_CP053721	Escherichia coli strain CP131_Sichuan plasmid pCP131-IncHI1, complete sequence	198909-198957	15	0.694
NZ_AP023197_4	4.1\|1572668\|49\|NZ_AP023197\|CRISPRCasFinder	1572668-1572716	49	NZ_CP044299	Escherichia coli strain P59A plasmid pP59A-CTX-M-55, complete sequence	91418-91466	15	0.694

1. spacer 7.1|2863006|40|NZ_AP023197|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 1, identity: 0.975

gcgctgcggatcattcttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
*********.******************************

2. spacer 6.1|2209027|38|NZ_AP023197|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

3. spacer 3.14|1074315|32|NZ_AP023197|CRISPRCasFinder matches to LC542972 (Escherichia coli IOMTU792 plasmid pIOMTU792 DNA, complete sequence) position: , mismatch: 4, identity: 0.875

ggcgcactggatgcgatgatggatatcactga	CRISPR spacer
gacgcactggatgcgatgatggacatcacttg	Protospacer
*.*********************.****** .

4. spacer 9.1|3839150|41|NZ_AP023197|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 4, identity: 0.902

gccggatgcggcacaagtttgtaggcatgataagacgcgct	CRISPR spacer
taccgatccggcacaagtttgtaggcatgataagacgcgct	Protospacer
  * *** *********************************

5. spacer 9.1|3839150|41|NZ_AP023197|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 4, identity: 0.902

gccggatgcggcacaagtttgtaggcatgataagacgcgct	CRISPR spacer
taccgatccggcacaagtttgtaggcatgataagacgcgct	Protospacer
  * *** *********************************

6. spacer 9.1|3839150|41|NZ_AP023197|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 4, identity: 0.902

gccggatgcggcacaagtttgtaggcatgataagacgcgct	CRISPR spacer
taccgatccggcacaagtttgtaggcatgataagacgcgct	Protospacer
  * *** *********************************

7. spacer 9.1|3839150|41|NZ_AP023197|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 4, identity: 0.902

gccggatgcggcacaagtttgtaggcatgataagacgcgct	CRISPR spacer
taccgatccggcacaagtttgtaggcatgataagacgcgct	Protospacer
  * *** *********************************

8. spacer 3.8|1073949|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026928 (Agrobacterium tumefaciens strain 1D1609 plasmid pAt1D1609b, complete sequence) position: , mismatch: 6, identity: 0.812

ttgacgccagcggcgacccgcgccacg--ggctt	CRISPR spacer
tatacgccaacggcgaccggcgccacgccggc--	Protospacer
*  ******.******** ********  ***

9. spacer 2.3|1047642|32|NZ_AP023197|CRISPRCasFinder,CRT matches to MT110073 (Stenotrophomonas phage vB_SmaS_DLP_3, complete genome) position: , mismatch: 7, identity: 0.781

aggggcagggagtgacgctggagcaggcgatc	CRISPR spacer
gggagggggcattgacgctggagcaggcgaac	Protospacer
.**.* .** * ****************** *

10. spacer 3.1|1073522|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to NC_015979 (Lactobacillus sanfranciscensis TMW 1.1304 plasmid pLS1, complete sequence) position: , mismatch: 7, identity: 0.781

catttaatgcaaaactaattgcacaataaata	CRISPR spacer
catttaaagcaaaactaatttcaccaatataa	Protospacer
******* ************ *** *  *  *

11. spacer 3.1|1073522|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to MT939487 (Erwinia phage pEa_SNUABM_47, complete genome) position: , mismatch: 7, identity: 0.781

catttaatgcaaaactaattgcac-aataaata	CRISPR spacer
catttaatgcaccactaattgcacttaccgat-	Protospacer
***********  ***********  *. .**

12. spacer 3.1|1073522|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to MT939486 (Erwinia phage pEa_SNUABM_12, complete genome) position: , mismatch: 7, identity: 0.781

catttaatgcaaaactaattgcac-aataaata	CRISPR spacer
catttaatgcaccactaattgcacttaccgat-	Protospacer
***********  ***********  *. .**

13. spacer 3.1|1073522|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to NC_041917 (Serratia phage BF, complete genome) position: , mismatch: 7, identity: 0.781

catttaatgcaaaactaattgcac-aataaata	CRISPR spacer
catttaatgcaccactaattgcacttaccgat-	Protospacer
***********  ***********  *. .**

14. spacer 3.1|1073522|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to MT939488 (Erwinia phage pEa_SNUABM_50, complete genome) position: , mismatch: 7, identity: 0.781

catttaatgcaaaactaattgcac-aataaata	CRISPR spacer
catttaatgcaccactaattgcacttaccgat-	Protospacer
***********  ***********  *. .**

15. spacer 3.1|1073522|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP016791 (Bacillus flexus strain KLBMP 4941 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.781

catttaatgcaaaactaattgcacaataaata	CRISPR spacer
caattaatccaaaactaattgcaataataatc	Protospacer
** ***** **************  *  ***

16. spacer 3.1|1073522|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to KJ019094 (Synechococcus phage ACG-2014e isolate Syn7803US33, complete genome) position: , mismatch: 7, identity: 0.781

catttaatgcaaaactaattgcacaataaata	CRISPR spacer
gatttaatacaaaattaattgcaccaccaaga	Protospacer
 *******.*****.********* *. ** *

17. spacer 3.1|1073522|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to KJ019156 (Synechococcus phage ACG-2014e isolate Syn7803C2, complete genome) position: , mismatch: 7, identity: 0.781

catttaatgcaaaactaattgcacaataaata	CRISPR spacer
gatttaatacaaaattaattgcaccaccaaga	Protospacer
 *******.*****.********* *. ** *

18. spacer 3.1|1073522|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to KJ019054 (Synechococcus phage ACG-2014e isolate Syn7803C85, complete genome) position: , mismatch: 7, identity: 0.781

catttaatgcaaaactaattgcacaataaata	CRISPR spacer
gatttaatacaaaattaattgcaccaccaaga	Protospacer
 *******.*****.********* *. ** *

19. spacer 3.1|1073522|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to KJ019082 (Synechococcus phage ACG-2014i isolate Syn7803US120, complete genome) position: , mismatch: 7, identity: 0.781

catttaatgcaaaactaattgcacaataaata	CRISPR spacer
gatttaatacaaaattaattgcaccaccaaga	Protospacer
 *******.*****.********* *. ** *

20. spacer 3.8|1073949|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032348 (Azospirillum brasilense strain MTCC4039 plasmid p4, complete sequence) position: , mismatch: 7, identity: 0.781

ttgacgccagcggcgacccgcgccacgggctt---	CRISPR spacer
gcgacgccggcgtcgacccgcgccac---cttcag	Protospacer
 .******.*** *************   ***

21. spacer 3.8|1073949|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP020952 (Rhizobium sp. CIAT894 plasmid pRheCIAT894e, complete sequence) position: , mismatch: 7, identity: 0.781

ttgacgccagcggcgacccgcgccacgggctt----	CRISPR spacer
ttgccgcgagcggcgacccgcgc----ggcctggcg	Protospacer
*** *** ***************    ***.*

22. spacer 3.14|1074315|32|NZ_AP023197|CRISPRCasFinder matches to NZ_CP015038 (Burkholderia cenocepacia strain 895 plasmid pBcp895-1, complete sequence) position: , mismatch: 7, identity: 0.781

ggcgcactggatgcgatgatggat-atcactga	CRISPR spacer
ggcgcactggctgcgatgaaggacgatcaacc-	Protospacer
********** ******** ***. **** .

23. spacer 9.1|3839150|41|NZ_AP023197|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 7, identity: 0.829

gccggatgcggcacaagtttgtaggcatgataagacgcgct	CRISPR spacer
taccgttcaggcacaagtttgtaggcatgataagacgcgcc	Protospacer
  * * *  *******************************.

24. spacer 9.1|3839150|41|NZ_AP023197|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 7, identity: 0.829

gccggatgcggcacaagtttgtaggcatgataagacgcgct	CRISPR spacer
taccgttcaggcacaagtttgtaggcatgataagacgcgcc	Protospacer
  * * *  *******************************.

25. spacer 9.1|3839150|41|NZ_AP023197|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 7, identity: 0.829

gccggatgcggcacaagtttgtaggcatgataagacgcgct	CRISPR spacer
taccgttcaggcacaagtttgtaggcatgataagacgcgcc	Protospacer
  * * *  *******************************.

26. spacer 9.1|3839150|41|NZ_AP023197|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 7, identity: 0.829

gccggatgcggcacaagtttgtaggcatgataagacgcgct	CRISPR spacer
taccgttcaggcacaagtttgtaggcatgataagacgcgcc	Protospacer
  * * *  *******************************.

27. spacer 9.1|3839150|41|NZ_AP023197|CRISPRCasFinder matches to NZ_CP044308 (Escherichia coli strain C27A plasmid pC27A-3, complete sequence) position: , mismatch: 7, identity: 0.829

gccggatgcggcacaagtttgtaggcatgataagacgcgct	CRISPR spacer
taccgttcaggcacaagtttgtaggcatgataagacgcgcc	Protospacer
  * * *  *******************************.

28. spacer 3.1|1073522|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to MN698239 (Pelagibacter phage HTVC023P, complete genome) position: , mismatch: 8, identity: 0.75

catttaatgcaaaactaattgcacaataaata	CRISPR spacer
tctgtaatgcaaaatcaattgcacaatgttta	Protospacer
. * **********..***********.  **

29. spacer 3.5|1073766|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR594660 (Variovorax sp. PBL-H6 plasmid 2) position: , mismatch: 8, identity: 0.75

cacaccggtgcgacgggaaacgttcagcggcc	CRISPR spacer
ggcttccgtgcgacggaaatcgttcagcggct	Protospacer
 .* .* *********.** ***********.

30. spacer 3.5|1073766|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR594667 (Variovorax sp. SRS16 plasmid 2) position: , mismatch: 8, identity: 0.75

cacaccggtgcgacgggaaacgttcagcggcc	CRISPR spacer
ggcttccgtgcgacggaaatcgttcagcggct	Protospacer
 .* .* *********.** ***********.

31. spacer 3.5|1073766|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR594690 (Variovorax sp. WDL1 plasmid 2) position: , mismatch: 8, identity: 0.75

cacaccggtgcgacgggaaacgttcagcggcc	CRISPR spacer
ggcttccgtgcgacggaaatcgttcagcggct	Protospacer
 .* .* *********.** ***********.

32. spacer 3.5|1073766|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR594672 (Variovorax sp. PBL-E5 plasmid 2) position: , mismatch: 8, identity: 0.75

cacaccggtgcgacgggaaacgttcagcggcc	CRISPR spacer
ggcttccgtgcgacggaaatcgttcagcggct	Protospacer
 .* .* *********.** ***********.

33. spacer 3.8|1073949|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP022593 (Mycolicibacterium arabiense strain JCM 18538 plasmid pJCM18538, complete sequence) position: , mismatch: 8, identity: 0.75

ttgacgccagcggcgacccgcgccacgggctt	CRISPR spacer
gggacaccagccgcgacccgcgccacgccatc	Protospacer
  ***.***** ***************   *.

34. spacer 3.8|1073949|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015988 (Sphingobium sp. EP60837 plasmid pEP1, complete sequence) position: , mismatch: 8, identity: 0.75

ttgacgccagcggcgacccgcgccacgggctt	CRISPR spacer
tcgacgccagcggcgaccggtgccagcgccgc	Protospacer
*.**************** *.****  * * .

35. spacer 3.13|1074254|32|NZ_AP023197|CRISPRCasFinder,CRT matches to NZ_AP018516 (Acetobacter orientalis strain FAN1 plasmid pAOF1, complete sequence) position: , mismatch: 8, identity: 0.75

gcaacgacggtgagatttcacgcctgacgctg	CRISPR spacer
tcaacgacggtaagatgtcacgcctaaagaat	Protospacer
 **********.**** ********.* *

36. spacer 3.14|1074315|32|NZ_AP023197|CRISPRCasFinder matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 8, identity: 0.75

ggcgcactggatgcgatgatggata---tcactga	CRISPR spacer
ggcgcactggaagcggtgatggaggggcgcac---	Protospacer
*********** ***.******* .    ***

37. spacer 3.1|1073522|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to NC_018141 (Legionella pneumophila subsp. pneumophila plasmid pLELO, complete sequence) position: , mismatch: 9, identity: 0.719

catttaatgcaaaactaattgcacaataaata	CRISPR spacer
gaaataatgcaaaaccaattgaacaattagcc	Protospacer
 *  ***********.***** ***** *..

38. spacer 3.1|1073522|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045305 (Legionella longbeachae strain B1445CHC plasmid pB1445CHC_150k, complete sequence) position: , mismatch: 9, identity: 0.719

catttaatgcaaaactaattgcacaataaata	CRISPR spacer
gaaataatgcaaaaccaattgaacaattagcc	Protospacer
 *  ***********.***** ***** *..

39. spacer 3.1|1073522|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP025492 (Legionella sainthelensi strain LA01-117 plasmid pLA01-117_150k, complete sequence) position: , mismatch: 9, identity: 0.719

catttaatgcaaaactaattgcacaataaata	CRISPR spacer
gaaataatgcaaaaccaattgaacaattagcc	Protospacer
 *  ***********.***** ***** *..

40. spacer 3.1|1073522|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021284 (Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

catttaatgcaaaactaattgcacaataaata	CRISPR spacer
gaaataatgcaaaaccaattgaacaattagcc	Protospacer
 *  ***********.***** ***** *..

41. spacer 3.1|1073522|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042253 (Legionella longbeachae strain B3526CHC plasmid pB3526CHC_150k, complete sequence) position: , mismatch: 9, identity: 0.719

catttaatgcaaaactaattgcacaataaata	CRISPR spacer
gaaataatgcaaaaccaattgaacaattagcc	Protospacer
 *  ***********.***** ***** *..

42. spacer 3.1|1073522|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP011106 (Legionella pneumophila strain L10-023 isolate Ulm plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.719

catttaatgcaaaactaattgcacaataaata	CRISPR spacer
gaaataatgcaaaaccaattgaacaattagcc	Protospacer
 *  ***********.***** ***** *..

43. spacer 3.8|1073949|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013600 (Rhizobium sp. N741 plasmid pRspN741e, complete sequence) position: , mismatch: 9, identity: 0.719

ttgacgccagcggcgacccgcgccacgggctt	CRISPR spacer
ctggcgccagcggcgtcccgcgccaggaaaga	Protospacer
.**.*********** ********* *..

44. spacer 3.8|1073949|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013504 (Rhizobium esperanzae strain N561 plasmid pRspN561d, complete sequence) position: , mismatch: 9, identity: 0.719

ttgacgccagcggcgacccgcgccacgggctt	CRISPR spacer
ctggcgccagcggcgtcccgcgccaggaaaga	Protospacer
.**.*********** ********* *..

45. spacer 3.8|1073949|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013510 (Rhizobium sp. N1341 plasmid pRspN1341e, complete sequence) position: , mismatch: 9, identity: 0.719

ttgacgccagcggcgacccgcgccacgggctt	CRISPR spacer
ctggcgccagcggcgtcccgcgccaggaaaga	Protospacer
.**.*********** ********* *..

46. spacer 3.8|1073949|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013521 (Rhizobium sp. N113 plasmid pRspN113d, complete sequence) position: , mismatch: 9, identity: 0.719

ttgacgccagcggcgacccgcgccacgggctt	CRISPR spacer
ctggcgccagcggcgtcccgcgccaggaaaga	Protospacer
.**.*********** ********* *..

47. spacer 3.8|1073949|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013494 (Rhizobium sp. N6212 plasmid pRspN6212d, complete sequence) position: , mismatch: 9, identity: 0.719

ttgacgccagcggcgacccgcgccacgggctt	CRISPR spacer
ctggcgccagcggcgtcccgcgccaggaaaga	Protospacer
.**.*********** ********* *..

48. spacer 3.8|1073949|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013594 (Rhizobium sp. N871 plasmid pRspN871d, complete sequence) position: , mismatch: 9, identity: 0.719

ttgacgccagcggcgacccgcgccacgggctt	CRISPR spacer
ctggcgccagcggcgtcccgcgccaggaaaga	Protospacer
.**.*********** ********* *..

49. spacer 3.8|1073949|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017076 (Novosphingobium resinovorum strain SA1 plasmid pSA1, complete sequence) position: , mismatch: 9, identity: 0.719

ttgacgccagcggcgacccgcgccacgggctt	CRISPR spacer
atgacgccggcggcgaccagcgccttgctgtc	Protospacer
 *******.********* ***** .*   *.

50. spacer 3.8|1073949|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032325 (Azospirillum brasilense strain MTCC4035 plasmid p4, complete sequence) position: , mismatch: 9, identity: 0.719

ttgacgccagcggcgacccgcgccacgggctt	CRISPR spacer
aggtcgccggcggcgacccgcgccccgacgtc	Protospacer
  * ****.*************** **.  *.

51. spacer 3.8|1073949|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to NC_012520 (Rhodococcus opacus B4 plasmid pROB01, complete sequence) position: , mismatch: 9, identity: 0.719

ttgacgccagcggcgacccgcgccacgggctt	CRISPR spacer
acgcgaccagccgcgacctgcgccacgggttg	Protospacer
 .*  .***** ******.**********.*

52. spacer 3.8|1073949|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP029831 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed7, complete sequence) position: , mismatch: 9, identity: 0.719

ttgacgccagcggcgacccgcgccacgggctt	CRISPR spacer
gggagcgcagcggcgaccggctccacgggccg	Protospacer
  **   *********** ** ********.

53. spacer 3.8|1073949|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to NC_016624 (Azospirillum lipoferum 4B plasmid AZO_p5, complete sequence) position: , mismatch: 9, identity: 0.719

ttgacgccagcggcgacccgcgccacgggctt---	CRISPR spacer
gtgacgcctgccgcgacccgcgcc---cgcccgat	Protospacer
 ******* ** ************    **..

54. spacer 3.8|1073949|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035513 (Haematobacter massiliensis strain OT1 plasmid pOT1-3, complete sequence) position: , mismatch: 9, identity: 0.719

ttgacgccagcggcgacccgcgccacgggctt	CRISPR spacer
tgccccgcagcggtgatccgcgccacgggccg	Protospacer
*   *  ******.**.*************.

55. spacer 3.9|1074010|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to NC_027120 (Lactococcus phage 1358, complete sequence) position: , mismatch: 9, identity: 0.719

tagccagacgtactcgcaatctgtcggcggtc	CRISPR spacer
ggacacgccgaactcgtaatctgtcggcggtt	Protospacer
 ..*  * ** *****.**************.

56. spacer 3.14|1074315|32|NZ_AP023197|CRISPRCasFinder matches to NZ_CP017563 (Paraburkholderia sprentiae WSM5005 plasmid pl1WSM5005, complete sequence) position: , mismatch: 9, identity: 0.719

ggcgcactggatgcgatgatggatatcactga	CRISPR spacer
ggcgcactggaaccgatgatggatgcgatgag	Protospacer
***********  ***********.. *. ..

57. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 9, identity: 0.816

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
cgccatccgtaggccggataaggcgttcacgccgcatccggcagtcgtg	Protospacer
. * * **************************.********** .** .

58. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 9, identity: 0.816

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
cgccatccgtaggccggataaggcgttcacgccgcatccggcagtcgtg	Protospacer
. * * **************************.********** .** .

59. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 9, identity: 0.816

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
cgccacccgtaggccggataaggcgttcacgccgcatccggcagtcgtg	Protospacer
. * * **************************.********** .** .

60. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 9, identity: 0.816

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
cgccatccgtaggccggataaggcgttcacgccgcatccggcagtcgtg	Protospacer
. * * **************************.********** .** .

61. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 9, identity: 0.816

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
cgccatccgtaggccggataaggcgttcacgccgcatccggcagtcgtg	Protospacer
. * * **************************.********** .** .

62. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 9, identity: 0.816

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
cgccacccgtaggccggataaggcgttcacgccgcatccggcagtcgtg	Protospacer
. * * **************************.********** .** .

63. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 9, identity: 0.816

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
cgccatccgtaggccggataaggcgttcacgccgcatccggcagtcgtg	Protospacer
. * * **************************.********** .** .

64. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 9, identity: 0.816

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
cgccatccgtaggccggataaggcgttcacgccgcatccggcagtcgtg	Protospacer
. * * **************************.********** .** .

65. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 9, identity: 0.816

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
cgccacccgtaggccggataaggcgttcacgccgcatccggcagtcgtg	Protospacer
. * * **************************.********** .** .

66. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 9, identity: 0.816

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
cgccatccgtaggccggataaggcgttcacgccgcatccggcagtcgtg	Protospacer
. * * **************************.********** .** .

67. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 9, identity: 0.816

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
cgccatccgtaggccggataaggcgttcacgccgcatccggcagtcgtg	Protospacer
. * * **************************.********** .** .

68. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 9, identity: 0.816

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
cgccacccgtaggccggataaggcgttcacgccgcatccggcagtcgtg	Protospacer
. * * **************************.********** .** .

69. spacer 5.1|1978049|48|NZ_AP023197|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 9, identity: 0.812

ttggcagtgtgcctgatgcgacgctgttcgcgtcttaccaggcctacc	CRISPR spacer
tgcacaagatgcctgatgcgacgctgtccgcgtcttatcaggcctacg	Protospacer
*  .**. .******************.*********.*********

70. spacer 8.1|3070447|32|NZ_AP023197|CRISPRCasFinder matches to NZ_CP045060 (Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p1, complete sequence) position: , mismatch: 9, identity: 0.719

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

71. spacer 8.1|3070447|32|NZ_AP023197|CRISPRCasFinder matches to NZ_CP045053 (Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p1, complete sequence) position: , mismatch: 9, identity: 0.719

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

72. spacer 8.1|3070447|32|NZ_AP023197|CRISPRCasFinder matches to NZ_CP045057 (Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p1, complete sequence) position: , mismatch: 9, identity: 0.719

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

73. spacer 8.2|3070507|33|NZ_AP023197|CRISPRCasFinder matches to MN855903 (Myoviridae sp. isolate 490, partial genome) position: , mismatch: 9, identity: 0.727

gttcgctgcaaccgctagccaagacggtaggtt	CRISPR spacer
gttcgctgcaaccgttcgccaagaccacaaagg	Protospacer
**************.* ******** ..*..

74. spacer 8.3|3070455|32|NZ_AP023197|PILER-CR matches to NZ_CP045060 (Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p1, complete sequence) position: , mismatch: 9, identity: 0.719

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

75. spacer 8.3|3070455|32|NZ_AP023197|PILER-CR matches to NZ_CP045053 (Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p1, complete sequence) position: , mismatch: 9, identity: 0.719

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

76. spacer 8.3|3070455|32|NZ_AP023197|PILER-CR matches to NZ_CP045057 (Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p1, complete sequence) position: , mismatch: 9, identity: 0.719

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

77. spacer 8.4|3070515|33|NZ_AP023197|PILER-CR matches to MN855903 (Myoviridae sp. isolate 490, partial genome) position: , mismatch: 9, identity: 0.727

gttcgctgcaaccgctagccaagacggtaggtt	CRISPR spacer
gttcgctgcaaccgttcgccaagaccacaaagg	Protospacer
**************.* ******** ..*..

78. spacer 3.1|1073522|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to NC_049439 (Salmonella phage SenASZ3, complete genome) position: , mismatch: 10, identity: 0.688

catttaatgcaaaactaattgcacaataaata	CRISPR spacer
aggctaatgcgaaactgattgcacaatttgtc	Protospacer
 . .******.*****.**********  .*

79. spacer 3.1|1073522|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to MN871502 (UNVERIFIED: Salmonella phage SeHz-1, complete genome) position: , mismatch: 10, identity: 0.688

catttaatgcaaaactaattgcacaataaata	CRISPR spacer
aggctaatgcgaaactgattgcacaatttgtc	Protospacer
 . .******.*****.**********  .*

80. spacer 3.1|1073522|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to MT974436 (Salmonella phage ISTP3, complete genome) position: , mismatch: 10, identity: 0.688

catttaatgcaaaactaattgcacaataaata	CRISPR spacer
aggctaatgcgaaactgattgcacaatttgtc	Protospacer
 . .******.*****.**********  .*

81. spacer 3.1|1073522|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to MN342150 (Escherichia phage vB_EcoM_3HA11, complete genome) position: , mismatch: 10, identity: 0.688

catttaatgcaaaactaattgcacaataaata	CRISPR spacer
agactaatgcgaaactgattgcacaatttgtc	Protospacer
 . .******.*****.**********  .*

82. spacer 3.1|1073522|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to MN871493 (UNVERIFIED: Salmonella phage Se-E, complete genome) position: , mismatch: 10, identity: 0.688

catttaatgcaaaactaattgcacaataaata	CRISPR spacer
aggctaatgcgaaactgattgcacaatttgtc	Protospacer
 . .******.*****.**********  .*

83. spacer 3.1|1073522|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to LR811967 (Salmonella phage Se_EM1 genome assembly, chromosome: 1) position: , mismatch: 10, identity: 0.688

catttaatgcaaaactaattgcacaataaata	CRISPR spacer
aggctaatgcgaaactgattgcacaatttgtc	Protospacer
 . .******.*****.**********  .*

84. spacer 3.1|1073522|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to NC_016073 (Salmonella phage SFP10, complete genome) position: , mismatch: 10, identity: 0.688

catttaatgcaaaactaattgcacaataaata	CRISPR spacer
aggctaatgcgaaactgattgcacaatttgtc	Protospacer
 . .******.*****.**********  .*

85. spacer 3.1|1073522|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to MT074477 (Salmonella phage barely, complete genome) position: , mismatch: 10, identity: 0.688

catttaatgcaaaactaattgcacaataaata	CRISPR spacer
aggctaatgcgaaactgattgcacaatttgtc	Protospacer
 . .******.*****.**********  .*

86. spacer 3.1|1073522|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to MT074476 (Salmonella phage kage, complete genome) position: , mismatch: 10, identity: 0.688

catttaatgcaaaactaattgcacaataaata	CRISPR spacer
aggctaatgcgaaactgattgcacaatttgtc	Protospacer
 . .******.*****.**********  .*

87. spacer 3.1|1073522|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to MN871491 (UNVERIFIED: Salmonella phage Se-B, complete genome) position: , mismatch: 10, identity: 0.688

catttaatgcaaaactaattgcacaataaata	CRISPR spacer
aggctaatgcgaaactgattgcacaatttgtc	Protospacer
 . .******.*****.**********  .*

88. spacer 3.1|1073522|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to NC_027119 (Salmonella phage Det7, complete genome) position: , mismatch: 10, identity: 0.688

catttaatgcaaaactaattgcacaataaata	CRISPR spacer
aggctaatgcgaaactgattgcacaatttgtc	Protospacer
 . .******.*****.**********  .*

89. spacer 3.1|1073522|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to MT074474 (Salmonella phage aagejoakim, complete genome) position: , mismatch: 10, identity: 0.688

catttaatgcaaaactaattgcacaataaata	CRISPR spacer
aggctaatgcgaaactgattgcacaatttgtc	Protospacer
 . .******.*****.**********  .*

90. spacer 3.1|1073522|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to KY000003 (Salmonella phage STP07, complete genome) position: , mismatch: 10, identity: 0.688

catttaatgcaaaactaattgcacaataaata	CRISPR spacer
aggctaatgcgaaactgattgcacaatttgtc	Protospacer
 . .******.*****.**********  .*

91. spacer 3.1|1073522|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to MT074478 (Salmonella phage moki, complete genome) position: , mismatch: 10, identity: 0.688

catttaatgcaaaactaattgcacaataaata	CRISPR spacer
aggctaatgcgaaactgattgcacaatttgtc	Protospacer
 . .******.*****.**********  .*

92. spacer 3.1|1073522|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to KC139524 (Salmonella phage FSL SP-063 baseplate hub subunit and tail lysozyme, baseplate wedge subunit, hypothetical proteins, ribonucleotide reductase B subunit, hypothetical protein, ribonucleoside-diphosphate reductase subunit alpha, phosphate starvation-inducible protein, hypothetical proteins, DNA primase, hypothetical proteins, recombination endonuclease subunit, endonuclease subunit, RNA polymerase sigma factor, ribonuclease H, hypothetical protein, ATP-dependent helicase, DNA-binding HU protein, hypothetical proteins, putative membrane protein, hypothetical proteins, acyl carrier protein, hypothetical proteins, translation repressor protein, clamp loader subunit, clamp loader small subunit, sliding clamp, hypothetical protein, helicase, exonuclease, hypothetical protein, tail completion protein, hypothetical proteins, major capsid protein, prohead core protein, prohead core scaffolding protein and protease, hypothetical proteins, portal vertex protein, tail tube protein, GIY-YIG endonuclease, hypothetical protein, tail sheath protein, large terminase protein, hypothetical protein, tail sheath stabilizer and completion protein, neck protein, hypothetical protein, neck protein, hypothetical proteins, tail spike protein, and hypothetical protein genes, complete cds) position: , mismatch: 10, identity: 0.688

catttaatgcaaaactaattgcacaataaata	CRISPR spacer
agactaatgcgaaactgattgcacaatttgtc	Protospacer
 . .******.*****.**********  .*

93. spacer 3.1|1073522|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to MN445184 (Escherichia phage vB_EcoA_4HA11, complete genome) position: , mismatch: 10, identity: 0.688

catttaatgcaaaactaattgcacaataaata	CRISPR spacer
aggctaatgcgaaactgattgcacaatttgtc	Protospacer
 . .******.*****.**********  .*

94. spacer 3.1|1073522|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to NC_049495 (Salmonella phage Se-B, complete genome) position: , mismatch: 10, identity: 0.688

catttaatgcaaaactaattgcacaataaata	CRISPR spacer
aggctaatgcgaaactgattgcacaatttgtc	Protospacer
 . .******.*****.**********  .*

95. spacer 3.1|1073522|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to MH523359 (Salmonella phage vB_SalM-LPST94, complete genome) position: , mismatch: 10, identity: 0.688

catttaatgcaaaactaattgcacaataaata	CRISPR spacer
aggctaatgcgaaactgattgcacaatttgtc	Protospacer
 . .******.*****.**********  .*

96. spacer 3.1|1073522|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to MT074475 (Salmonella phage dinky, complete genome) position: , mismatch: 10, identity: 0.688

catttaatgcaaaactaattgcacaataaata	CRISPR spacer
aggctaatgcgaaactgattgcacaatttgtc	Protospacer
 . .******.*****.**********  .*

97. spacer 3.1|1073522|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to MN871492 (UNVERIFIED: Salmonella phage Se-D, complete genome) position: , mismatch: 10, identity: 0.688

catttaatgcaaaactaattgcacaataaata	CRISPR spacer
aggctaatgcgaaactgattgcacaatttgtc	Protospacer
 . .******.*****.**********  .*

98. spacer 3.1|1073522|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to MH709120 (Salmonella phage SeSz-3, complete genome) position: , mismatch: 10, identity: 0.688

catttaatgcaaaactaattgcacaataaata	CRISPR spacer
aggctaatgcgaaactgattgcacaatttgtc	Protospacer
 . .******.*****.**********  .*

99. spacer 3.1|1073522|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to MT074470 (Salmonella phage heyday, complete genome) position: , mismatch: 10, identity: 0.688

catttaatgcaaaactaattgcacaataaata	CRISPR spacer
aggctaatgcgaaactgattgcacaatttgtc	Protospacer
 . .******.*****.**********  .*

100. spacer 3.1|1073522|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to KX171211 (Salmonella phage vB_SenM-2, complete genome) position: , mismatch: 10, identity: 0.688

catttaatgcaaaactaattgcacaataaata	CRISPR spacer
aggctaatgcgaaactgattgcacaatttgtc	Protospacer
 . .******.*****.**********  .*

101. spacer 3.1|1073522|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to NC_049508 (Salmonella phage maane, complete genome) position: , mismatch: 10, identity: 0.688

catttaatgcaaaactaattgcacaataaata	CRISPR spacer
aggctaatgcgaaactgattgcacaatttgtc	Protospacer
 . .******.*****.**********  .*

102. spacer 3.1|1073522|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to MT074479 (Salmonella phage pertopsoe, complete genome) position: , mismatch: 10, identity: 0.688

catttaatgcaaaactaattgcacaataaata	CRISPR spacer
aggctaatgcgaaactgattgcacaatttgtc	Protospacer
 . .******.*****.**********  .*

103. spacer 3.1|1073522|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to NC_031045 (Salmonella phage GG32, complete genome) position: , mismatch: 10, identity: 0.688

catttaatgcaaaactaattgcacaataaata	CRISPR spacer
aggctaatgcgaaactgattgcacaatttgtc	Protospacer
 . .******.*****.**********  .*

104. spacer 3.2|1073583|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049158 (Caballeronia sp. SBC1 plasmid pSBC1_2, complete sequence) position: , mismatch: 10, identity: 0.688

gcgataaacctcctcatcgctgatatcaataa	CRISPR spacer
cagataaacctccgcttcgctgatacccgggt	Protospacer
  *********** * *********.* . .

105. spacer 3.2|1073583|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049318 (Caballeronia sp. SBC2 plasmid pSBC2-2, complete sequence) position: , mismatch: 10, identity: 0.688

gcgataaacctcctcatcgctgatatcaataa	CRISPR spacer
cagataaacctccgcttcgctgatacccgggt	Protospacer
  *********** * *********.* . .

106. spacer 3.2|1073583|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040452 (Halomonas sp. PA16-9 plasmid p_unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

gcgataaacctcctcatcgctgatatcaataa	CRISPR spacer
ttcacgaacctgctgatcgctgatatcaagcg	Protospacer
 . *..***** ** **************  .

107. spacer 3.8|1073949|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017325 (Xanthomonas campestris pv. campestris str. CN15 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

ttgacgccagcggcgacccgcgccacgggctt	CRISPR spacer
acccatccagcggcgcaccgcgccacgggcga	Protospacer
 .    *********  *************

108. spacer 3.8|1073949|32|NZ_AP023197|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017318 (Xanthomonas campestris pv. campestris str. CN14 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

ttgacgccagcggcgacccgcgccacgggctt	CRISPR spacer
acccatccagcggcgcaccgcgccacgggcga	Protospacer
 .    *********  *************

109. spacer 3.10|1074071|32|NZ_AP023197|CRISPRCasFinder,CRT matches to NZ_KT282968 (Escherichia coli strain EC012 plasmid pEC012, complete sequence) position: , mismatch: 10, identity: 0.688

ccagttctccgtattctgtggttatcgttgct	CRISPR spacer
tttcttctgcgtattctttggttatcgcaaca	Protospacer
..  **** ******** *********. .*

110. spacer 3.10|1074071|32|NZ_AP023197|CRISPRCasFinder,CRT matches to NZ_CP019244 (Escherichia coli strain Combat2C1 plasmid pCombat2C1-1, complete sequence) position: , mismatch: 10, identity: 0.688

ccagttctccgtattctgtggttatcgttgct	CRISPR spacer
tttcttctgcgtattctttggttatcgcaaca	Protospacer
..  **** ******** *********. .*

111. spacer 3.10|1074071|32|NZ_AP023197|CRISPRCasFinder,CRT matches to MH579767 (Salmonella enterica subsp. enterica serovar Typhi strain SAL-18-0989 isolate B plasmid pSTY-blaCTX-M-65, complete sequence) position: , mismatch: 10, identity: 0.688

ccagttctccgtattctgtggttatcgttgct	CRISPR spacer
tttcttctgcgtattctttggttatcgcaaca	Protospacer
..  **** ******** *********. .*

112. spacer 3.10|1074071|32|NZ_AP023197|CRISPRCasFinder,CRT matches to LN735558 (Escherichia coli plasmid pC193, complete sequence, strain C193) position: , mismatch: 10, identity: 0.688

ccagttctccgtattctgtggttatcgttgct	CRISPR spacer
tttcttctgcgtattctttggttatcgcaaca	Protospacer
..  **** ******** *********. .*

113. spacer 3.10|1074071|32|NZ_AP023197|CRISPRCasFinder,CRT matches to LN735559 (Escherichia coli plasmid pM105, complete sequence, strain M105) position: , mismatch: 10, identity: 0.688

ccagttctccgtattctgtggttatcgttgct	CRISPR spacer
tttcttctgcgtattctttggttatcgcaaca	Protospacer
..  **** ******** *********. .*

114. spacer 3.10|1074071|32|NZ_AP023197|CRISPRCasFinder,CRT matches to LN735560 (Escherichia coli plasmid pV408, complete sequence, strain V408) position: , mismatch: 10, identity: 0.688

ccagttctccgtattctgtggttatcgttgct	CRISPR spacer
tttcttctgcgtattctttggttatcgcaaca	Protospacer
..  **** ******** *********. .*

115. spacer 3.10|1074071|32|NZ_AP023197|CRISPRCasFinder,CRT matches to LN735561 (Escherichia coli plasmid pC271, complete sequence, strain C271) position: , mismatch: 10, identity: 0.688

ccagttctccgtattctgtggttatcgttgct	CRISPR spacer
tttcttctgcgtattctttggttatcgcaaca	Protospacer
..  **** ******** *********. .*

116. spacer 3.10|1074071|32|NZ_AP023197|CRISPRCasFinder,CRT matches to NZ_CP047578 (Escherichia coli strain 94EC plasmid p94EC-2, complete sequence) position: , mismatch: 10, identity: 0.688

ccagttctccgtattctgtggttatcgttgct	CRISPR spacer
tttcttctgcgtattctttggttatcgcaaca	Protospacer
..  **** ******** *********. .*

117. spacer 3.10|1074071|32|NZ_AP023197|CRISPRCasFinder,CRT matches to NZ_CP047572 (Escherichia coli strain 2EC1 plasmid p2EC1-1, complete sequence) position: , mismatch: 10, identity: 0.688

ccagttctccgtattctgtggttatcgttgct	CRISPR spacer
tttcttctgcgtattctttggttatcgcaaca	Protospacer
..  **** ******** *********. .*

118. spacer 3.10|1074071|32|NZ_AP023197|CRISPRCasFinder,CRT matches to NZ_MG545910 (Escherichia coli strain EC014 plasmid pEC014, complete sequence) position: , mismatch: 10, identity: 0.688

ccagttctccgtattctgtggttatcgttgct	CRISPR spacer
tttcttctgcgtattctttggttatcgcaaca	Protospacer
..  **** ******** *********. .*

119. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 10, identity: 0.796

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
cgccatccgtaggccggataaggcgtttacgccgcatccggcagtcgtg	Protospacer
. * * *********************.****.********** .** .

120. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 10, identity: 0.796

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
cgccatccgtaggccggataaggcgtttacgccgcatccggcagtcgtg	Protospacer
. * * *********************.****.********** .** .

121. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 10, identity: 0.796

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
cgccatccgtaggccggataaggcgtttacgccgcatccggcagtcgtg	Protospacer
. * * *********************.****.********** .** .

122. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 10, identity: 0.796

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
cgccatccgtaggccggataaggcgtttacgccgcatccggcagtcgtg	Protospacer
. * * *********************.****.********** .** .

123. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 10, identity: 0.796

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
tgccgaatgtaggccggataaggcgttcacgccgcatccggcaaccagc	Protospacer
* * .. .************************.********** **.*

124. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 11, identity: 0.776

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
actcaaccgtaggccggataaggcgttcacgccgcatccggcaattgtg	Protospacer
 .. *.**************************.********** ..* .

125. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 11, identity: 0.776

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
actcaaccgtaggccggataaggcgttcacgccgcatccggcaattgtg	Protospacer
 .. *.**************************.********** ..* .

126. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.776

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
cgccattcgtaggccggataaggcgttcacgccgcatccggcatgaaca	Protospacer
. * * .*************************.**********.  . *

127. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.776

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
cgccattcgtaggccggataaggcgttcacgccgcatccggcaatggtg	Protospacer
. * * .*************************.********** . * .

128. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.776

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
cgccactcgtaggccggataaggcgttcacgccgcatccggcaatggtg	Protospacer
. * * .*************************.********** . * .

129. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.776

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
cgccattcgtaggccggataaggcgttcacgccgcatccggcatgaaca	Protospacer
. * * .*************************.**********.  . *

130. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.776

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
cgccattcgtaggccggataaggcgttcacgccgcatccggcaatggtg	Protospacer
. * * .*************************.********** . * .

131. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.776

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
cgccactcgtaggccggataaggcgttcacgccgcatccggcaatggtg	Protospacer
. * * .*************************.********** . * .

132. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.776

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
cgccattcgtaggccggataaggcgttcacgccgcatccggcatgaaca	Protospacer
. * * .*************************.**********.  . *

133. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.776

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
cgccattcgtaggccggataaggcgttcacgccgcatccggcaatggtg	Protospacer
. * * .*************************.********** . * .

134. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.776

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
cgccactcgtaggccggataaggcgttcacgccgcatccggcaatggtg	Protospacer
. * * .*************************.********** . * .

135. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.776

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
cgccattcgtaggccggataaggcgttcacgccgcatccggcatgaaca	Protospacer
. * * .*************************.**********.  . *

136. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.776

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
cgccattcgtaggccggataaggcgttcacgccgcatccggcaatggtg	Protospacer
. * * .*************************.********** . * .

137. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.776

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
cgccactcgtaggccggataaggcgttcacgccgcatccggcaatggtg	Protospacer
. * * .*************************.********** . * .

138. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 11, identity: 0.776

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
accaaaccgtaggccggataaggcgtttacgccgcatccggcaaaaagc	Protospacer
 .*.*.*********************.****.**********   .*

139. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_AP023209 (Escherichia coli strain TUM18781 plasmid pMTY18781-4, complete sequence) position: , mismatch: 11, identity: 0.776

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
ggccatccgtaggccggataaggcgttcacaccgcatccggcataaaca	Protospacer
  * * ************************.*.**********.  . *

140. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.755

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
tgctctacgtaggccggataaggcgttcacgccgcatccggcataaact	Protospacer
* *    *************************.**********.  .

141. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.755

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
tgctctacgtaggccggataaggcgttcacgccgcatccggcataaact	Protospacer
* *    *************************.**********.  .

142. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.755

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
cgccactcgtaggccggataaggcgtccacgccgcatccggcagtggtg	Protospacer
. * * .*******************.*****.********** . * .

143. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.755

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
tgctctacgtaggccggataaggcgttcacgccgcatccggcataaact	Protospacer
* *    *************************.**********.  .

144. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.755

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
tgctctacgtaggccggataaggcgttcacgccgcatccggcataaact	Protospacer
* *    *************************.**********.  .

145. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.755

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
cgccactcgtaggccggataaggcgtccacgccgcatccggcagtggtg	Protospacer
. * * .*******************.*****.********** . * .

146. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.755

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
tgctctacgtaggccggataaggcgttcacgccgcatccggcataaact	Protospacer
* *    *************************.**********.  .

147. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.755

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
tgctctacgtaggccggataaggcgttcacgccgcatccggcataaact	Protospacer
* *    *************************.**********.  .

148. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.755

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
cgccactcgtaggccggataaggcgtccacgccgcatccggcagtggtg	Protospacer
. * * .*******************.*****.********** . * .

149. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.755

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
tgctctacgtaggccggataaggcgttcacgccgcatccggcataaact	Protospacer
* *    *************************.**********.  .

150. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.755

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
tgctctacgtaggccggataaggcgttcacgccgcatccggcataaact	Protospacer
* *    *************************.**********.  .

151. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.755

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
cgccactcgtaggccggataaggcgtccacgccgcatccggcagtggtg	Protospacer
. * * .*******************.*****.********** . * .

152. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 12, identity: 0.755

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
gcgcatttgtaggccggataaggcgtttacgccgcatccggcaccagct	Protospacer
 .  * ..*******************.****.************ *

153. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 12, identity: 0.755

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
tagtgtgcgtaggccggataaggcgttcacgccgcatccggcatttgag	Protospacer
*   .  *************************.**********...*..

154. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 12, identity: 0.755

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
tgccaaatgtaggccggataaggcgtttacgccgcatccggcatttgct	Protospacer
* * *. .*******************.****.**********...*

155. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 12, identity: 0.755

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
atggttttgtaggccggataaggcgttcacgccgcatccggcaaaacaa	Protospacer
 * *  ..************************.**********    .*

156. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 12, identity: 0.755

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
gctcacccgtaggccggataaggcgttcacgccgcatccggcggttgtg	Protospacer
 .. * **************************.*********. ..* .

157. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 12, identity: 0.755

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
actcacccgtaggccggataaggcgttcacgccgcatccggcggttgtg	Protospacer
 .. * **************************.*********. ..* .

158. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 12, identity: 0.755

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
tgcccgttgtaggccggataaggcgttcacgccgcatccggcaaaaatt	Protospacer
* *  *..************************.**********   .

159. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 12, identity: 0.755

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
agtctggcgtaggccggataaggcgtttacgccgcatccggcacttgtg	Protospacer
  .  * ********************.****.***********..* .

160. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 12, identity: 0.755

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
cacgtcctgtaggccggataaggcgtttacgccgcatccggcaagaaaa	Protospacer
. **  *.*******************.****.**********   ..*

161. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to MG065691 (UNVERIFIED: Campylobacter phage A11a, complete genome) position: , mismatch: 12, identity: 0.755

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
ggcttaccgtaggccggatcaggcgttcacgccgcatccggcaaagtgt	Protospacer
  *  .************* ************.**********    *

162. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to MG065686 (UNVERIFIED: Campylobacter phage A18a, complete genome) position: , mismatch: 12, identity: 0.755

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
ggcttaccgtaggccggatcaggcgttcacgccgcatccggcaaagtgt	Protospacer
  *  .************* ************.**********    *

163. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to MF374379 (Escherichia phage DN1, complete genome) position: , mismatch: 12, identity: 0.755

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
cgcggtttgtaggccggataaggcgttcacgccgcatccggcataaaca	Protospacer
. **. ..************************.**********.  . *

164. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to MT230112 (Escherichia coli strain DH5alpha plasmid pESBL112, complete sequence) position: , mismatch: 12, identity: 0.755

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
ttgcttttgtaggccggataaggcgtttacgccgcatccggcaacataa	Protospacer
**    ..*******************.****.********** *  .*

165. spacer 9.1|3839150|41|NZ_AP023197|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 12, identity: 0.707

gccggatgcggcacaagtttgtaggcatgataagacgcgct	CRISPR spacer
tcgcaaaaacgcacagatttgtaggcatgataagacgcgtc	Protospacer
 *  .* .  *****..**********************..

166. spacer 9.1|3839150|41|NZ_AP023197|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 12, identity: 0.707

gccggatgcggcacaagtttgtaggcatgataagacgcgct	CRISPR spacer
tcgcaaaaacgcacagatttgtaggcatgataagacgcgtc	Protospacer
 *  .* .  *****..**********************..

167. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 13, identity: 0.735

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
tgccgaatgtaggccggataaggcgtttacgccgcatccggcaatcaac	Protospacer
* * .. .*******************.****.********** .*..

168. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 13, identity: 0.735

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
cttggtttgtaggccggataaggcgttcacgccgcatccggcattttac	Protospacer
.*.*. ..************************.**********... .

169. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 13, identity: 0.735

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
ttatccatgtaggccggataaggcgtttacgccgcatccggcaattgtg	Protospacer
**     .*******************.****.********** ..* .

170. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to MG065691 (UNVERIFIED: Campylobacter phage A11a, complete genome) position: , mismatch: 13, identity: 0.735

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
atgattttgtaggccggataaggcgttcacgccgcatccggcaagaagc	Protospacer
 * .  ..************************.**********   .*

171. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to MG065686 (UNVERIFIED: Campylobacter phage A18a, complete genome) position: , mismatch: 13, identity: 0.735

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
atgattttgtaggccggataaggcgttcacgccgcatccggcaagaagc	Protospacer
 * .  ..************************.**********   .*

172. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NC_049343 (Escherichia phage 500465-2, complete genome) position: , mismatch: 13, identity: 0.735

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
cgtcacacgtaggtcggataaggcgttcacgccgcatccggcaaacact	Protospacer
. . *  ******.******************.**********  *.

173. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 14, identity: 0.714

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
atgcttttgtaggccggataaggcgttcacgccgcatccggcattgact	Protospacer
 *    ..************************.**********.. .

174. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_CP019246 (Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence) position: , mismatch: 14, identity: 0.714

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
cgctttttgtaggccggataaggcgtttacgccgcatccggcataaaca	Protospacer
. *   ..*******************.****.**********.  . *

175. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 15, identity: 0.694

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
acgattttgtaggccggataaggcgtttacgccgcatccggcattttgt	Protospacer
 . .  ..*******************.****.**********... *

176. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_CP044308 (Escherichia coli strain C27A plasmid pC27A-3, complete sequence) position: , mismatch: 15, identity: 0.694

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
cgttttttgtaggccggataaggcgtttacgccgcatccggcaatggtg	Protospacer
. .   ..*******************.****.********** . * .

177. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_CP053721 (Escherichia coli strain CP131_Sichuan plasmid pCP131-IncHI1, complete sequence) position: , mismatch: 15, identity: 0.694

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
acaattttgtaggctggataaggcgttcacgccgcatccggcatgaaca	Protospacer
 . .  ..******.*****************.**********.  . *

178. spacer 4.1|1572668|49|NZ_AP023197|CRISPRCasFinder matches to NZ_CP044299 (Escherichia coli strain P59A plasmid pP59A-CTX-M-55, complete sequence) position: , mismatch: 15, identity: 0.694

ttcgagccgtaggccggataaggcgttcacgctgcatccggcacccgga	CRISPR spacer
acaattttgtaggctggataaggcgttcacgccgcatccggcatgaaca	Protospacer
 . .  ..******.*****************.**********.  . *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1693530 : 1702975

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_174402623.1\|1693530_1694457_+	glycine betaine ABC transporter ATP binding protein YehX	F2Y1V5	Organic_Lake_phycodnavirus	2.0e-08	26.8
WP_000783120.1\|1694461_1695193_+	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_001216963.1\|1695173_1695281_-	protein YohO	NA	NA	NA	NA
WP_001240396.1\|1695340_1696072_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	8.2e-111	98.5
WP_001295431.1\|1696293_1697979_+	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
WP_000598641.1\|1697975_1698695_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001295430.1\|1698741_1699212_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
WP_001295429.1\|1699252_1699714_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	1.9e-76	100.0
WP_170283454.1\|1699838_1701842_-	SWIM zinc finger family protein	Q9EYF6	Enterobacteria_phage	0.0e+00	96.9
WP_001292772.1\|1701838_1702975_-	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	4.2e-162	97.4

DBSCAN-SWA_2

2031098 : 2072496

Escherichia_phage(45.45%)

transposase,integrase,tRNA

attL 2044960:2045019|attR 2068851:2069468

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_021556889.1\|2031098_2031794_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	NA	NA	NA	NA
WP_000290576.1\|2031833_2032415_+	Slp family lipoprotein YeaY	NA	NA	NA	NA
WP_000758422.1\|2032619_2034305_+	long-chain-fatty-acid--CoA ligase FadD	A0A2H4PQM9	Staphylococcus_phage	1.5e-35	26.0
WP_021556888.1\|2034386_2035502_+	ribonuclease D	NA	NA	NA	NA
WP_001287016.1\|2035555_2036521_-	carnitine monooxygenase subunit YeaX	NA	NA	NA	NA
WP_000067822.1\|2036576_2037701_-	carnitine monooxygenase subunit YeaW	NA	NA	NA	NA
WP_001537023.1\|2037732_2039343_-	BCCT family transporter YeaV	NA	NA	NA	NA
WP_021556887.1\|2039593_2040679_-	multifunctional D-malate/3-isopropylmalate/tartarate dehydrogenase	NA	NA	NA	NA
WP_001061578.1\|2040781_2041705_+	DNA-binding transcriptional regulator DmlR	NA	NA	NA	NA
WP_000457207.1\|2041831_2042470_+	leucine efflux protein LeuE	NA	NA	NA	NA
WP_000939317.1\|2042642_2043002_+	DUF1971 domain-containing protein	NA	NA	NA	NA
WP_000513737.1\|2043005_2043188_+	DUF1869 domain-containing protein	NA	NA	NA	NA
WP_000512153.1\|2043335_2043584_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_001386836.1\|2043642_2043717_-	protein YoaJ	NA	NA	NA	NA
WP_001219350.1\|2043719_2043818_-	YoaK family small membrane protein	NA	NA	NA	NA
WP_001383245.1\|2043850_2044876_-	diguanylate cyclase DgcP	NA	NA	NA	NA
2044960:2045019	attL	NA	NA	NA	NA
WP_000412211.1\|2045950_2046610_+	type A-1 chloramphenicol O-acetyltransferase	G3CFL0	Escherichia_phage	8.4e-131	100.0
WP_000656305.1\|2046810_2047188_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_174402636.1\|2047254_2050221_-\|transposase	Tn3-like element TnAs3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.5
WP_000147567.1\|2050223_2050784_-	recombinase family protein	A0A1B0V7I5	Salmonella_phage	4.0e-49	86.2
WP_000454193.1\|2050909_2051260_-	DUF3330 domain-containing protein	NA	NA	NA	NA
WP_000845039.1\|2051462_2052476_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
WP_001083725.1\|2052620_2053118_+	trimethoprim-resistant dihydrofolate reductase DfrA12	A0A0A0PL85	Bacillus_phage	7.5e-23	40.9
WP_001336345.1\|2053229_2053520_+	DUF1010 domain-containing protein	NA	NA	NA	NA
WP_001206356.1\|2053525_2054317_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
WP_000679427.1\|2054480_2054828_+	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA
WP_000259031.1\|2054821_2055661_+	sulfonamide-resistant dihydropteroate synthase Sul1	NA	NA	NA	NA
WP_000376616.1\|2055788_2055992_+	hypothetical protein	NA	NA	NA	NA
WP_000184001.1\|2056147_2057353_+	chromate efflux transporter	NA	NA	NA	NA
WP_000130000.1\|2057363_2057669_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_001389365.1\|2057895_2058660_+\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
WP_001137892.1\|2059152_2059737_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_000004159.1\|2059736_2060975_-	MFS transporter	NA	NA	NA	NA
WP_000219391.1\|2060971_2061877_-	Mph(A) family macrolide 2'-phosphotransferase	NA	NA	NA	NA
WP_001067855.1\|2061998_2062703_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001300294.1\|2064092_2064761_-	EAL domain-containing protein	NA	NA	NA	NA
WP_000993386.1\|2064796_2065033_-	broad-spectrum mercury transporter MerE	NA	NA	NA	NA
WP_174402637.1\|2065029_2065392_-	mercury resistance co-regulator MerD	NA	NA	NA	NA
WP_000105636.1\|2065409_2067104_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	8.8e-39	27.6
WP_001447540.1\|2067155_2067578_-	organomercurial transporter MerC	NA	NA	NA	NA
WP_000732292.1\|2067613_2067889_-	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA
WP_001294663.1\|2067902_2068253_-	mercuric transport protein MerT	NA	NA	NA	NA
WP_000429836.1\|2068324_2068759_+	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA
WP_001067855.1\|2069772_2070477_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
2068851:2069468	attR	NA	NA	NA	NA
WP_052463150.1\|2070513_2070753_-	hypothetical protein	NA	NA	NA	NA
WP_000557454.1\|2070765_2071626_-	aminoglycoside N-acetyltransferase AAC(3)-IId	NA	NA	NA	NA
WP_001067855.1\|2071791_2072496_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0

DBSCAN-SWA_3

2988063 : 3083791

Pseudomonas_phage(12.5%)

protease,capsid,transposase,terminase,tRNA,head,integrase

attL 2987461:2987475|attR 3084288:3084301

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2987461:2987475	attL	NA	NA	NA	NA
WP_000886683.1\|2988063_2989356_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.5e-94	48.2
2987461:2987475	attL	NA	NA	NA	NA
WP_021556648.1\|2989446_2990790_-	replication-associated recombination protein RarA	G3MBE0	Bacillus_virus	2.8e-80	40.8
WP_001295343.1\|2990800_2991412_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA
WP_021556647.1\|2991566_2995673_-	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	1.2e-86	48.7
WP_000228473.1\|2995807_2996302_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA
WP_000537418.1\|2996846_2997812_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	8.5e-63	44.6
WP_021556646.1\|2997934_2999701_+	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	W8CYL7	Bacillus_phage	7.0e-23	24.3
WP_021556645.1\|2999701_3001423_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	W8CYL7	Bacillus_phage	6.4e-21	25.2
WP_001241678.1\|3001464_3002169_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
WP_001040187.1\|3002453_3002672_+	translation initiation factor IF-1	NA	NA	NA	NA
WP_072643849.1\|3003162_3004005_-	DUF4942 domain-containing protein	NA	NA	NA	NA
WP_072643848.1\|3004089_3004287_-	DUF957 domain-containing protein	NA	NA	NA	NA
WP_039022338.1\|3004298_3004787_-	hypothetical protein	NA	NA	NA	NA
WP_000854808.1\|3004783_3005161_-	type IV toxin-antitoxin system toxin CbtA	NA	NA	NA	NA
WP_104213682.1\|3005249_3005618_-	type IV toxin-antitoxin system YeeU family antitoxin	NA	NA	NA	NA
WP_174402654.1\|3005667_3006312_-	antitoxin of toxin-antitoxin stability system	A0A2I6PI07	Pseudomonas_phage	1.0e-27	33.3
WP_113847077.1\|3006330_3006552_-	DUF987 domain-containing protein	A0A142F0X9	Klebsiella_phage	1.2e-09	44.4
WP_001186771.1\|3006620_3007097_-	RadC family protein	NA	NA	NA	NA
WP_174402655.1\|3007112_3007598_-	antirestriction protein	A9J566	Pseudomonas_phage	2.0e-12	31.0
WP_048943269.1\|3007688_3008507_-	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	3.0e-45	38.6
WP_000789536.1\|3008917_3009331_-	hypothetical protein	A0A1B2IAE4	Erwinia_phage	5.8e-21	42.0
WP_001104026.1\|3009600_3010140_-	DUF4339 domain-containing protein	NA	NA	NA	NA
WP_000771527.1\|3010265_3010724_-	hypothetical protein	NA	NA	NA	NA
WP_000102620.1\|3010852_3011923_-	patatin-like phospholipase family protein	NA	NA	NA	NA
WP_048943270.1\|3011919_3012825_-	chemotaxis protein	NA	NA	NA	NA
WP_048943271.1\|3012821_3015218_-	dynamin family protein	NA	NA	NA	NA
WP_021527212.1\|3015435_3016308_-	GTPase family protein	NA	NA	NA	NA
WP_174402656.1\|3016571_3018128_+	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	8.4e-105	42.7
WP_170877645.1\|3018124_3019372_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_029396238.1\|3019493_3022610_+	HsdR family type I site-specific deoxyribonuclease	NA	NA	NA	NA
WP_156838592.1\|3022757_3023738_-\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	4.0e-185	99.1
WP_029364370.1\|3023857_3024238_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	2.7e-65	98.4
WP_000612591.1\|3024234_3024582_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.2e-61	100.0
WP_072643824.1\|3024631_3026170_+\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	2.2e-283	94.3
WP_029396387.1\|3026607_3027342_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_001287791.1\|3028537_3028729_+	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_000124181.1\|3028781_3029015_-	hypothetical protein	NA	NA	NA	NA
WP_001260380.1\|3029110_3029734_-	hypothetical protein	NA	NA	NA	NA
WP_029396382.1\|3029994_3030390_+	hypothetical protein	NA	NA	NA	NA
WP_002461143.1\|3030686_3031460_+	hypothetical protein	NA	NA	NA	NA
WP_001334840.1\|3033899_3034364_+	N-6 DNA methylase	A0A220A2U4	Liberibacter_phage	3.3e-33	49.0
WP_103246109.1\|3034356_3034704_+	N-6 DNA methylase	A0A2H4PQP4	Staphylococcus_phage	5.8e-22	52.2
WP_000255946.1\|3034890_3035913_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	4.6e-200	99.4
WP_001297096.1\|3035912_3036692_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_077249079.1\|3037387_3038839_+	DUF262 domain-containing protein	NA	NA	NA	NA
WP_000995974.1\|3038831_3040874_+	DUF262 domain-containing protein	NA	NA	NA	NA
WP_063084449.1\|3041060_3046796_+	DUF4011 domain-containing protein	NA	NA	NA	NA
WP_063084450.1\|3047555_3049064_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.4e-43	31.6
WP_001254932.1\|3050226_3051378_+\|transposase	IS30-like element IS30 family transposase	W5R8L2	Staphylococcus_phage	2.0e-42	35.6
WP_063082219.1\|3052842_3054201_-	esterase-like activity of phytase family protein	NA	NA	NA	NA
WP_104213618.1\|3056394_3056781_+	hypothetical protein	NA	NA	NA	NA
WP_000861580.1\|3056789_3056981_+	hypothetical protein	NA	NA	NA	NA
WP_174402657.1\|3057058_3059998_+	AAA family ATPase	U5J9B0	Bacillus_phage	7.1e-12	25.5
WP_023285886.1\|3059994_3061419_+	hypothetical protein	NA	NA	NA	NA
WP_174402658.1\|3061605_3062574_+\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	9.4e-179	96.0
WP_000282094.1\|3063240_3063804_-	inovirus-type Gp2 protein	NA	NA	NA	NA
WP_072643827.1\|3065014_3066838_-	hypothetical protein	NA	NA	NA	NA
WP_072643828.1\|3066938_3067187_+	AlpA family transcriptional regulator	NA	NA	NA	NA
WP_065304405.1\|3067202_3068768_+	DUF3987 domain-containing protein	NA	NA	NA	NA
WP_072643829.1\|3068991_3070200_-\|integrase	tyrosine-type recombinase/integrase	A0A1B0VMI6	Pseudomonas_phage	2.9e-44	34.2
WP_000934041.1\|3070778_3073055_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.9e-166	42.5
3070348:3070362	attR	NA	NA	NA	NA
WP_000520781.1\|3073085_3073406_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.6e-13	44.4
3070348:3070362	attR	NA	NA	NA	NA
WP_001710151.1\|3074192_3074477_-	hypothetical protein	NA	NA	NA	NA
WP_021548686.1\|3074734_3075277_-\|terminase	terminase small subunit	O64316	Escherichia_phage	3.5e-34	45.7
WP_001179421.1\|3075478_3075862_-	AlpA family phage regulatory protein	NA	NA	NA	NA
WP_000190777.1\|3075873_3076215_-\|head	head decoration protein	NA	NA	NA	NA
WP_000228102.1\|3076224_3077265_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	7.5e-65	41.6
WP_000126656.1\|3077482_3077905_-	single-stranded DNA-binding protein	NA	NA	NA	NA
WP_063112633.1\|3077901_3078147_-	hypothetical protein	NA	NA	NA	NA
WP_063112632.1\|3078433_3080251_-	DNA primase	Q7M2A8	Enterobacteria_phage	2.2e-128	48.1
WP_001710148.1\|3080247_3080547_-	DUF4222 domain-containing protein	NA	NA	NA	NA
WP_001113144.1\|3080553_3080874_-	hypothetical protein	NA	NA	NA	NA
WP_001710147.1\|3080866_3081913_-	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
WP_001206975.1\|3081923_3082133_-	AlpA family phage regulatory protein	A0A2H4JB58	uncultured_Caudovirales_phage	1.5e-17	71.4
WP_063112630.1\|3082552_3083791_-\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	6.9e-126	52.5
3084288:3084301	attR	NA	NA	NA	NA

DBSCAN-SWA_4

3686535 : 3791064

102

Escherichia_phage(30.0%)

capsid,holin,lysis,terminase,head,tail,integrase,portal

attL 3741276:3741331|attR 3787153:3787208

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000131044.1\|3686535_3688569_-\|holin	choline BCCT transporter BetT	A0A2I7QNT1	Vibrio_phage	3.4e-21	27.4
WP_001301903.1\|3688697_3689285_+	transcriptional regulator BetI	NA	NA	NA	NA
WP_021556526.1\|3689298_3690771_+	betaine-aldehyde dehydrogenase	NA	NA	NA	NA
WP_021556525.1\|3690784_3692473_+\|holin	choline dehydrogenase	A0A1V0S9M4	Catovirus	4.8e-61	31.2
WP_174402671.1\|3693150_3693285_-	hypothetical protein	NA	NA	NA	NA
WP_001362381.1\|3693528_3694092_+\|integrase	tyrosine-type recombinase/integrase	A0A2L1IV36	Escherichia_phage	1.8e-52	52.7
WP_001362383.1\|3694422_3695217_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_001213049.1\|3695370_3696132_+	hypothetical protein	NA	NA	NA	NA
WP_089078564.1\|3697277_3698471_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_021556522.1\|3698654_3699323_+	hypothetical protein	NA	NA	NA	NA
WP_021556521.1\|3699565_3700261_-	lactate utilization protein C	NA	NA	NA	NA
WP_000023918.1\|3700253_3701681_-	iron-sulfur cluster-binding protein	NA	NA	NA	NA
WP_001102115.1\|3701691_3702411_-	(Fe-S)-binding protein	NA	NA	NA	NA
WP_021556520.1\|3702939_3703794_-	DNA-binding transcriptional regulator RclR	NA	NA	NA	NA
WP_021556519.1\|3704019_3705345_+	pyridine nucleotide-disulfide oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	3.6e-112	47.4
WP_000474077.1\|3705453_3705690_+	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_001306921.1\|3705701_3706295_+	reactive chlorine species resistance protein RclC	NA	NA	NA	NA
WP_021556518.1\|3706454_3707324_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	9.3e-53	41.7
WP_000621020.1\|3707571_3708423_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_021556517.1\|3708543_3712797_-	intimin-like adhesin FdeC	NA	NA	NA	NA
WP_001174462.1\|3713362_3714214_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	4.4e-47	40.7
WP_001172290.1\|3714240_3715230_+	aldo/keto reductase	NA	NA	NA	NA
WP_000910719.1\|3715261_3716155_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_021556516.1\|3716355_3717282_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000860023.1\|3717438_3718359_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_021556515.1\|3718593_3719736_+	NADH-dependent flavin oxidoreductase	NA	NA	NA	NA
WP_000662258.1\|3720209_3720311_+	hypothetical protein	NA	NA	NA	NA
WP_000803998.1\|3720674_3720938_+	type B 50S ribosomal protein L31	NA	NA	NA	NA
WP_000866436.1\|3720937_3721078_+	50S ribosomal protein L36	NA	NA	NA	NA
WP_001147284.1\|3721147_3721339_-	hypothetical protein	NA	NA	NA	NA
WP_000389022.1\|3722162_3722705_+	ECP biosynthesis operon DNA-binding transcriptional regulator EcpR	NA	NA	NA	NA
WP_000730968.1\|3722779_3723367_+	common pilus major fimbrillin subunit EcpA	NA	NA	NA	NA
WP_174402672.1\|3723424_3724093_+	fimbrial chaperone EcpB	NA	NA	NA	NA
WP_001131058.1\|3724118_3726644_+	fimbrial usher EcpC	NA	NA	NA	NA
WP_021556514.1\|3726633_3728277_+	fimbrial adhesin EcpD	NA	NA	NA	NA
WP_021556513.1\|3728245_3728956_+	fimbrial chaperone EcpE	NA	NA	NA	NA
WP_001307600.1\|3729268_3729598_+	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_001019915.1\|3729844_3730459_-	YagU family protein	NA	NA	NA	NA
WP_120314245.1\|3730505_3730754_-	hypothetical protein	NA	NA	NA	NA
WP_021556512.1\|3730876_3731566_+	aldehyde dehydrogenase iron-sulfur subunit	NA	NA	NA	NA
WP_001624636.1\|3731562_3732519_+	aldehyde oxidoreductase FAD-binding subunit PaoB	NA	NA	NA	NA
WP_040234559.1\|3732515_3734714_+	aldehyde oxidoreductase molybdenum-binding subunit PaoC	A0A0P0I429	Acinetobacter_phage	1.5e-38	25.8
WP_021556510.1\|3734723_3735680_+	molybdenum cofactor insertion chaperone PaoD	NA	NA	NA	NA
WP_001612427.1\|3735857_3736985_-	MFS transporter	NA	NA	NA	NA
WP_021556509.1\|3737126_3738185_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_001119037.1\|3738449_3739334_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_024227134.1\|3740036_3740315_-	hypothetical protein	NA	NA	NA	NA
WP_021556507.1\|3740751_3741159_+	transcriptional regulator	NA	NA	NA	NA
3741276:3741331	attL	NA	NA	NA	NA
WP_052978476.1\|3741714_3746169_-	hypothetical protein	A0A2H4PQV1	Staphylococcus_phage	4.8e-44	32.4
WP_064226540.1\|3746706_3747291_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	1.4e-105	95.9
WP_071785654.1\|3747290_3750689_-\|tail	prophage tail fiber N-terminal domain-containing protein	X2KTY7	Enterobacteria_phage	1.8e-11	35.5
WP_001460792.1\|3750753_3751353_-	Ail/Lom family outer membrane beta-barrel protein	A0A0P0ZCF6	Stx2-converting_phage	3.7e-109	97.5
WP_174402673.1\|3751423_3754921_-	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	97.8
WP_000090891.1\|3754981_3755614_-\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	2.2e-96	99.5
WP_000194780.1\|3755550_3756294_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	2.5e-147	96.8
WP_001152624.1\|3756299_3756998_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	5.6e-133	99.1
WP_000847331.1\|3756997_3757327_-\|tail	phage tail protein	A0A2R9YJM0	Escherichia_phage	2.5e-59	100.0
WP_069903526.1\|3757323_3759885_-\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	91.4
WP_000459457.1\|3759877_3760312_-\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	6.9e-65	100.0
WP_000479193.1\|3760293_3760716_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.2e-60	85.7
WP_001317730.1\|3760731_3761472_-\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	5.2e-129	97.2
WP_000683117.1\|3761479_3761875_-\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	6.5e-70	98.5
WP_001398561.1\|3761871_3762450_-\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	8.6e-79	97.9
WP_000752960.1\|3762461_3762815_-\|head,tail	head-tail joining protein	A0A2R9YJJ5	Escherichia_phage	7.6e-62	99.1
WP_023566743.1\|3762826_3763222_-	DNA-packaging protein FI	A0A2R9YJP4	Escherichia_phage	7.4e-58	95.5
WP_000063238.1\|3763263_3764289_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	4.7e-189	97.9
WP_001295978.1\|3764344_3764677_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	3.8e-55	99.1
WP_089625925.1\|3764686_3766006_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	7.4e-235	99.1
WP_001345555.1\|3765986_3767588_-\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	1.3e-310	99.4
WP_000198149.1\|3767584_3767791_-	gpW family protein	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
WP_001027289.1\|3767787_3769713_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.7
WP_000453576.1\|3769687_3770233_-	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	4.7e-95	99.4
WP_001663509.1\|3770621_3770855_+	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	2.5e-21	96.3
WP_000079507.1\|3770912_3771323_+	DUF1398 family protein	C6ZCX4	Enterobacteria_phage	2.8e-52	75.6
WP_001283920.1\|3771911_3772175_-	hypothetical protein	A0A1V0E5Q1	Salmonella_phage	1.1e-33	98.6
WP_000839225.1\|3772171_3772669_-	KilA-N domain-containing protein	A0A220NRM9	Escherichia_phage	1.1e-93	100.0
WP_174402674.1\|3772870_3773332_-\|lysis	lysis protein	K7P735	Enterobacteria_phage	2.0e-70	90.8
WP_001075798.1\|3773328_3773943_-	glycoside hydrolase family 19 protein	A0A192Y6G4	Salmonella_phage	1.4e-111	99.0
WP_000422366.1\|3773942_3774224_-\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	9.7e-20	45.2
WP_001283169.1\|3774210_3774597_-\|holin	phage holin family protein	A0A192Y8P2	Salmonella_phage	7.0e-61	100.0
WP_000220228.1\|3774687_3775284_-	hypothetical protein	NA	NA	NA	NA
WP_000609696.1\|3775390_3775969_-	DUF1133 family protein	A0A0U2S606	Escherichia_phage	1.6e-45	53.9
WP_001471961.1\|3775983_3776973_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	2.8e-194	99.1
WP_001061444.1\|3776980_3777790_-	KilA-N domain-containing protein	A0A291AWU7	Escherichia_phage	1.8e-151	100.0
WP_000767113.1\|3777809_3778199_-	RusA family crossover junction endodeoxyribonuclease	A0A0P0ZD39	Stx2-converting_phage	7.1e-69	100.0
WP_000210171.1\|3778195_3778522_-	LexA family transcriptional regulator	Q8SBE8	Shigella_phage	9.2e-54	99.1
WP_001373735.1\|3778518_3779172_-	phage N-6-adenine-methyltransferase	A0A0P0ZCC0	Stx2-converting_phage	4.7e-126	99.1
WP_074513063.1\|3779171_3779666_-	PerC family transcriptional regulator	A0A0P0ZCF0	Stx2-converting_phage	4.3e-87	98.8
WP_000104943.1\|3779662_3780604_-	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	4.9e-140	93.0
WP_001250269.1\|3780593_3780773_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	7.8e-15	68.5
WP_024017504.1\|3780948_3781506_-	protein YmfL	S5FXP0	Shigella_phage	3.7e-95	94.6
WP_000649477.1\|3781549_3781750_-	helix-turn-helix domain-containing protein	U5P445	Shigella_phage	7.9e-32	100.0
WP_000848749.1\|3781840_3782515_+	LexA family transcriptional regulator	U5P0T5	Shigella_phage	6.0e-132	99.6
WP_000135680.1\|3783183_3783546_+	hypothetical protein	Q8SBF8	Shigella_phage	8.6e-61	100.0
WP_000081297.1\|3783611_3784436_+	YfdQ family protein	Q8SBF9	Shigella_phage	4.6e-150	99.6
WP_000008202.1\|3784563_3785100_+	5'-deoxynucleotidase	U5P0T3	Shigella_phage	9.7e-101	99.4
WP_001242749.1\|3785090_3785453_+	phage protein	U5P092	Shigella_phage	2.1e-67	100.0
WP_000206734.1\|3785452_3785758_+	hypothetical protein	U5P0J0	Shigella_phage	2.6e-50	99.0
WP_000051893.1\|3785984_3787148_+\|integrase	site-specific integrase	U5P434	Shigella_phage	5.3e-229	99.7
WP_000893267.1\|3787352_3788606_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	5.8e-96	47.2
3787153:3787208	attR	NA	NA	NA	NA
WP_001285288.1\|3788617_3789721_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.1e-61	40.4
WP_000749881.1\|3790008_3791064_+	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	7.7e-118	60.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_AP023200

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 79396

Salmonella_phage(94.12%)

tail,terminase,portal,integrase

attL 12853:12870|attR 28543:28560

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_072651234.1\|0_1056_+	replication protein RepA	J9Q7H0	Salmonella_phage	1.6e-171	91.0
WP_001229345.1\|1545_1758_-	hypothetical protein	J9Q7S8	Salmonella_phage	3.4e-33	94.3
WP_000644408.1\|1757_2093_-	hypothetical protein	J9Q7Z5	Salmonella_phage	6.6e-39	73.9
WP_001755515.1\|2308_2584_-	hypothetical protein	J9Q738	Salmonella_phage	2.0e-33	74.7
WP_000125192.1\|2639_3065_-	hypothetical protein	J9Q7G9	Salmonella_phage	5.0e-60	75.4
WP_000715581.1\|3156_3987_-	hypothetical protein	J9Q7Z4	Salmonella_phage	3.1e-122	94.9
WP_021520138.1\|3990_4191_-	hypothetical protein	J9Q6J0	Salmonella_phage	7.2e-09	59.1
WP_001051807.1\|4283_6623_-	recombinase RecA	J9Q736	Salmonella_phage	1.8e-29	85.1
WP_174402701.1\|6625_6892_-	hypothetical protein	J9Q7G8	Salmonella_phage	2.3e-31	77.3
WP_072647773.1\|6891_7836_-	exonuclease	J9Q7S6	Salmonella_phage	3.1e-158	86.9
WP_072647774.1\|7896_8925_-	regulator	J9Q7Z3	Salmonella_phage	9.7e-142	86.0
WP_000627054.1\|9042_9474_-	hypothetical protein	J9Q6I8	Salmonella_phage	1.5e-64	86.7
WP_072647775.1\|9599_13118_-	DNA polymerase III subunit alpha	J9Q7Z2	Salmonella_phage	0.0e+00	94.3
12853:12870	attL	NA	NA	NA	NA
WP_072647776.1\|13298_14534_-	AAA family ATPase	J9Q733	Salmonella_phage	2.4e-195	80.8
WP_072647777.1\|14629_16738_-	cobalamin biosynthesis protein CobT	J9Q7G6	Salmonella_phage	7.4e-229	66.7
WP_001098353.1\|16836_17049_-	hypothetical protein	NA	NA	NA	NA
WP_001282577.1\|17300_17687_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_021520132.1\|17681_18785_-\|integrase	site-specific integrase	A0A1P8DTG6	Proteus_phage	8.5e-27	32.9
WP_021520131.1\|19050_19566_-	hypothetical protein	NA	NA	NA	NA
WP_072647779.1\|19580_21977_-	fimbria/pilus outer membrane usher protein	NA	NA	NA	NA
WP_024189750.1\|21954_22623_-	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_112026172.1\|22675_23317_-	type 1 fimbrial protein	NA	NA	NA	NA
WP_112026171.1\|23428_23716_-	transcriptional regulator	NA	NA	NA	NA
WP_159194943.1\|24813_25059_-	GrxA family glutaredoxin	A0A2I7SAE2	Vibrio_phage	4.5e-13	43.6
WP_001718056.1\|25233_26496_+	hypothetical protein	NA	NA	NA	NA
WP_000067985.1\|28119_28410_-	hypothetical protein	J9Q7S1	Salmonella_phage	2.4e-37	79.2
WP_000636536.1\|28555_28771_-	hypothetical protein	J9Q6I3	Salmonella_phage	9.7e-20	72.1
28543:28560	attR	NA	NA	NA	NA
WP_023145134.1\|28767_30090_-	ATP-dependent DNA ligase	J9Q7G5	Salmonella_phage	1.8e-241	91.4
WP_164717859.1\|30086_30569_-	hypothetical protein	J9Q7R9	Salmonella_phage	1.1e-50	70.6
WP_021520122.1\|30624_31407_-	hypothetical protein	J9Q7Z0	Salmonella_phage	3.4e-54	41.1
WP_021520121.1\|31482_32598_-	hypothetical protein	J9Q720	Salmonella_phage	6.9e-210	94.1
WP_000137333.1\|32745_34086_-	AAA family ATPase	J9Q7G4	Salmonella_phage	3.4e-235	93.5
WP_021520120.1\|34129_34870_-	hypothetical protein	J9Q7R8	Salmonella_phage	8.3e-127	89.2
WP_021520119.1\|35050_35473_-	hypothetical protein	J9Q6F2	Salmonella_phage	1.2e-18	39.0
WP_021520118.1\|35465_36218_-	hypothetical protein	J9Q719	Salmonella_phage	3.9e-07	36.5
WP_160378290.1\|36269_36623_-	hypothetical protein	J9Q7G3	Salmonella_phage	1.4e-44	97.9
WP_000161228.1\|36628_37297_-	AAA family ATPase	J9Q7R7	Salmonella_phage	1.7e-110	91.4
WP_159194942.1\|37473_38226_-	hypothetical protein	J9Q7Y8	Salmonella_phage	1.3e-15	30.6
WP_000931257.1\|38210_38594_-	hypothetical protein	A0A077SLR3	Escherichia_phage	1.3e-11	43.3
WP_000901561.1\|38966_39218_-	hypothetical protein	J9Q7R6	Salmonella_phage	1.1e-27	81.9
WP_000856758.1\|39219_39912_-	membrane protein	J9Q7Y7	Salmonella_phage	1.4e-123	93.9
WP_000064175.1\|39925_40249_-	hypothetical protein	J9Q6E7	Salmonella_phage	2.9e-44	88.8
WP_049592659.1\|40452_43128_-\|tail	tail fiber protein	Q1MVL8	Enterobacteria_phage	3.2e-67	50.0
WP_024269791.1\|43264_43948_+	hypothetical protein	NA	NA	NA	NA
WP_097733807.1\|44583_49311_-	DUF1983 domain-containing protein	J9Q713	Salmonella_phage	0.0e+00	74.2
WP_001293195.1\|49328_49922_-\|tail	tail assembly protein	J9Q7F8	Salmonella_phage	2.0e-99	90.9
WP_000526939.1\|49909_50707_-	C40 family peptidase	J9Q7R4	Salmonella_phage	1.3e-154	93.6
WP_000511445.1\|50699_51398_-\|tail	phage minor tail protein L	J9Q7Y5	Salmonella_phage	1.5e-133	96.6
WP_000442113.1\|51480_51816_-\|tail	phage tail protein	J9Q6E1	Salmonella_phage	3.0e-52	86.4
WP_159194946.1\|51858_56406_-	tape measure protein	J9Q712	Salmonella_phage	0.0e+00	68.7
WP_000952686.1\|56413_56638_-	hypothetical protein	J9Q7F7	Salmonella_phage	8.8e-32	94.6
WP_159194945.1\|56763_57081_-	hypothetical protein	J9Q7R3	Salmonella_phage	4.3e-48	95.2
WP_000072377.1\|57136_57883_-	Ig domain-containing protein	J9Q7Y4	Salmonella_phage	2.8e-122	93.5
WP_021512326.1\|57957_58341_-	hypothetical protein	J9Q6D8	Salmonella_phage	2.3e-56	81.9
WP_000523628.1\|58342_58816_-	hypothetical protein	J9Q711	Salmonella_phage	3.3e-76	90.4
WP_001027663.1\|58806_59151_-	hypothetical protein	J9Q7F6	Salmonella_phage	2.3e-55	95.6
WP_000057118.1\|59230_60064_-	hypothetical protein	J9Q7R2	Salmonella_phage	1.3e-141	92.1
WP_000801187.1\|60063_60498_-	hypothetical protein	J9Q7Y3	Salmonella_phage	1.1e-59	82.6
WP_001308872.1\|60542_61463_-	Ig domain-containing protein	J9Q6D6	Salmonella_phage	1.4e-131	83.6
WP_001130339.1\|61536_62412_-	hypothetical protein	J9Q710	Salmonella_phage	4.2e-154	93.8
WP_001055285.1\|62437_63325_-	hypothetical protein	J9Q7F4	Salmonella_phage	7.1e-133	89.3
WP_000422362.1\|63346_64921_-\|portal	phage portal protein	J9Q7R1	Salmonella_phage	6.4e-286	93.1
WP_001007299.1\|64947_66204_-\|terminase	terminase	J9Q7Y2	Salmonella_phage	7.5e-245	96.4
WP_021520109.1\|66203_66836_-	hypothetical protein	J9Q6D4	Salmonella_phage	2.4e-90	83.8
WP_000176292.1\|67032_67299_-	hypothetical protein	J9Q757	Salmonella_phage	1.4e-36	88.6
WP_000129633.1\|67308_68199_-	hypothetical protein	J9Q7I6	Salmonella_phage	2.6e-167	98.6
WP_001717191.1\|68195_68861_-	ATP-binding cassette domain-containing protein	J9Q807	Salmonella_phage	2.8e-110	98.6
WP_072651720.1\|68857_69526_-	ParB N-terminal domain-containing protein	J9Q6L1	Salmonella_phage	9.5e-106	89.2
WP_063091540.1\|69525_70206_-	ParB N-terminal domain-containing protein	J9Q756	Salmonella_phage	2.7e-108	88.1
WP_072651721.1\|70288_71848_+	DEAD/DEAH box helicase	J9Q7I4	Salmonella_phage	2.4e-277	92.1
WP_001291061.1\|71850_72129_+	hypothetical protein	J9Q7T9	Salmonella_phage	4.6e-22	58.2
WP_001308871.1\|72161_72761_+	hypothetical protein	NA	NA	NA	NA
WP_072651722.1\|72905_73481_+	hypothetical protein	NA	NA	NA	NA
WP_072651723.1\|73509_73863_+	hypothetical protein	NA	NA	NA	NA
WP_072651724.1\|73975_74776_-	hypothetical protein	A0A0M4QWT0	Salmonella_phage	9.3e-07	32.5
WP_072651725.1\|74878_75397_+	transcriptional regulator	J9Q6L0	Salmonella_phage	7.2e-53	68.2
WP_159194944.1\|75693_76344_+	hypothetical protein	J9Q754	Salmonella_phage	5.3e-101	86.1
WP_000470243.1\|76391_76622_+	hypothetical protein	NA	NA	NA	NA
WP_001009193.1\|77237_77720_-	hypothetical protein	J9Q805	Salmonella_phage	7.9e-62	69.8
WP_021512333.1\|78070_78445_-	hypothetical protein	NA	NA	NA	NA
WP_001717183.1\|78562_78958_-	hypothetical protein	J9Q7I1	Salmonella_phage	1.6e-31	53.8
WP_000749407.1\|79084_79396_-	hypothetical protein	J9Q7T7	Salmonella_phage	5.7e-29	63.1

DBSCAN-SWA_2

83109 : 112222

Salmonella_phage(74.19%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_072647770.1\|83109_85143_-\|tRNA	methionine--tRNA ligase	A0A1V0SEZ7	Hokovirus	1.7e-44	24.2
WP_174402702.1\|85300_86401_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_089619671.1\|86438_86828_-	DNA repair protein	A0A077SK24	Escherichia_phage	6.2e-65	91.5
WP_089619672.1\|87626_88259_-	hypothetical protein	C6ZR26	Salmonella_phage	3.6e-06	71.1
WP_174402703.1\|88255_88639_-	hypothetical protein	A0A088FQU9	Escherichia_phage	6.2e-09	67.5
WP_089619673.1\|88635_88857_-	hypothetical protein	G8C7S3	Escherichia_phage	9.4e-10	52.1
WP_089619674.1\|88849_89521_-	DUF551 domain-containing protein	K7P7E4	Enterobacteria_phage	1.0e-46	43.1
WP_089619675.1\|90024_91710_-	DUF4942 domain-containing protein	J9Q747	Salmonella_phage	0.0e+00	92.0
WP_000467662.1\|91813_92428_-	hypothetical protein	A0A0E3GMH9	Enterobacteria_phage	1.2e-99	82.8
WP_021533177.1\|92430_92712_-	hypothetical protein	A0A0E3JPT1	Enterobacteria_phage	3.2e-39	76.3
WP_001718087.1\|92767_93337_-	hypothetical protein	J9Q7H6	Salmonella_phage	1.4e-52	61.4
WP_014962273.1\|93476_93635_-	DUF3927 family protein	NA	NA	NA	NA
WP_174402704.1\|93634_94060_-	tellurite resistance TerB family protein	Q71TK7	Escherichia_phage	3.6e-58	83.0
WP_021533180.1\|94153_94351_-	hypothetical protein	J9Q800	Salmonella_phage	2.6e-11	56.9
WP_032203382.1\|94360_94855_-	hypothetical protein	J9Q6J9	Salmonella_phage	5.7e-23	54.5
WP_165403129.1\|95003_95648_-	ribonuclease HI	J9Q745	Salmonella_phage	1.1e-98	82.3
WP_032203380.1\|96178_96409_-	hypothetical protein	J9Q7H5	Salmonella_phage	2.0e-31	85.5
WP_000559568.1\|96594_97188_-	phage N-6-adenine-methyltransferase	J9Q7T2	Salmonella_phage	2.0e-99	86.3
WP_053902537.1\|97371_98181_-	hypothetical protein	J9Q7Z9	Salmonella_phage	1.3e-64	53.2
WP_016607532.1\|98339_98897_-	3'-5' exonuclease	J9Q6J8	Salmonella_phage	1.7e-87	83.1
WP_053271994.1\|98906_99326_-	hypothetical protein	J9Q743	Salmonella_phage	1.2e-50	71.2
WP_000386469.1\|99387_100032_-	AAA family ATPase	J9Q7H4	Salmonella_phage	7.8e-97	81.3
WP_000781810.1\|100031_100508_-	dihydrofolate reductase	J9Q7T1	Salmonella_phage	2.0e-81	90.5
WP_000289389.1\|100504_100906_-	hypothetical protein	J9Q7Z8	Salmonella_phage	5.1e-62	87.2
WP_072652674.1\|100919_102023_-	thymidylate synthase	J9Q6J6	Salmonella_phage	1.3e-192	87.7
WP_001011861.1\|102194_103064_-	hypothetical protein	J9Q742	Salmonella_phage	5.3e-133	80.6
WP_112026176.1\|103141_104284_-	ribonucleotide-diphosphate reductase subunit beta	J9Q7H3	Salmonella_phage	4.5e-196	88.4
WP_000623683.1\|104390_106706_-	ribonucleoside-diphosphate reductase subunit alpha	J9Q7T0	Salmonella_phage	0.0e+00	84.3
WP_000037962.1\|106779_107349_-	hypothetical protein	J9Q7Z7	Salmonella_phage	1.1e-91	86.8
WP_000008655.1\|107358_108102_-	hypothetical protein	J9Q6J5	Salmonella_phage	2.0e-51	47.2
WP_021520140.1\|108091_110008_-	AAA family ATPase	J9Q741	Salmonella_phage	4.9e-248	73.0
WP_000174803.1\|110237_111323_-	metallophosphoesterase	J9Q7S9	Salmonella_phage	8.0e-187	87.5
WP_000364573.1\|111577_112222_-	hypothetical protein	J9Q739	Salmonella_phage	2.9e-107	86.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_AP023198

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

60534 : 162615

104

Escherichia_phage(40.0%)

transposase,integrase,protease

attL 55181:55194|attR 65978:65991

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
55181:55194	attL	NA	NA	NA	NA
WP_174402695.1\|60534_61710_-\|integrase	tyrosine-type recombinase/integrase	NA	NA	NA	NA
WP_001285422.1\|61880_62093_+	hypothetical protein	NA	NA	NA	NA
WP_000255946.1\|63022_64045_+\|transposase	IS21-like element IS100 family transposase	A0A2L1IVA1	Escherichia_phage	4.6e-200	99.4
WP_001297096.1\|64044_64824_+	AAA family ATPase	A0A2L1IVB6	Escherichia_phage	4.5e-139	99.6
WP_001284313.1\|65661_67161_-	kinase	NA	NA	NA	NA
65978:65991	attR	NA	NA	NA	NA
WP_000081622.1\|67186_68824_-	protein phosphatase 2C domain-containing protein	NA	NA	NA	NA
WP_001253653.1\|68823_69864_-	VWA domain-containing protein	NA	NA	NA	NA
WP_001253658.1\|69949_70588_-	VWA domain-containing protein	NA	NA	NA	NA
WP_000116681.1\|70587_71229_-	TerD family protein	NA	NA	NA	NA
WP_024179285.1\|71251_71890_-	VWA domain-containing protein	NA	NA	NA	NA
WP_001176767.1\|72352_72820_-	tellurium resistance protein TerW	NA	NA	NA	NA
WP_000506887.1\|72837_74046_-	DUF4236 domain-containing protein	NA	NA	NA	NA
WP_000797366.1\|74056_75013_-	HpcH/HpaI aldolase/citrate lyase family protein	NA	NA	NA	NA
WP_001182411.1\|75012_76092_-\|protease	cysteine protease StiP family protein	A0A172Q0S8	Acinetobacter_phage	8.1e-38	33.8
WP_001040059.1\|76093_76867_-	hypothetical protein	NA	NA	NA	NA
WP_001285478.1\|76859_78002_-	phosphoribosyltransferase domain-containing protein	A0A172Q0Y1	Acinetobacter_phage	1.7e-30	35.4
WP_001035162.1\|78011_79070_-	ATP-grasp domain-containing protein	NA	NA	NA	NA
WP_000254136.1\|79393_79975_+	TerD family protein	K4JRX3	Caulobacter_phage	6.3e-13	30.0
WP_001054787.1\|79974_81132_+	TerD family protein	NA	NA	NA	NA
WP_000007448.1\|81154_81610_+	tellurite resistance TerB family protein	NA	NA	NA	NA
WP_000255079.1\|81632_82673_+	tellurium resistance membrane protein TerC	K7QKE8	Escherichia_phage	2.2e-77	48.0
WP_000116677.1\|82721_83300_+	tellurium resistance membrane protein TerD	A0A2P1N0L4	Streptomyces_phage	3.3e-06	40.0
WP_000301242.1\|83367_83943_+	TerD family protein	K4JRX3	Caulobacter_phage	8.7e-31	41.6
WP_001053338.1\|84371_85613_+	VWA domain-containing protein	NA	NA	NA	NA
WP_000077926.1\|86175_86457_-	hypothetical protein	NA	NA	NA	NA
WP_000398480.1\|86506_86698_-	hypothetical protein	NA	NA	NA	NA
WP_001151575.1\|86789_87131_-	hypothetical protein	NA	NA	NA	NA
WP_000341066.1\|87503_87896_+	hypothetical protein	NA	NA	NA	NA
WP_024136327.1\|88499_88793_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000088046.1\|88797_90123_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
WP_000134171.1\|90183_90390_+	hypothetical protein	NA	NA	NA	NA
WP_000985911.1\|90491_90902_+	hypothetical protein	NA	NA	NA	NA
WP_001572439.1\|90914_91730_+	HNH endonuclease	G0X580	Salmonella_phage	1.1e-15	36.5
WP_001043843.1\|91983_92409_+	hypothetical protein	NA	NA	NA	NA
WP_001224687.1\|92957_93266_+	hypothetical protein	NA	NA	NA	NA
WP_000784387.1\|93281_94139_+	HNH endonuclease	G0X580	Salmonella_phage	3.9e-11	34.2
WP_001194555.1\|94200_94404_+	hypothetical protein	NA	NA	NA	NA
WP_001067855.1\|95092_95797_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000018321.1\|95972_96788_+	aminoglycoside O-phosphotransferase APH(3')-Ia	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	4.8e-160	98.2
WP_001067855.1\|97081_97786_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_065311128.1\|98826_99336_+	peptidase M14	NA	NA	NA	NA
WP_065311127.1\|99441_101343_+	AAA family ATPase	NA	NA	NA	NA
WP_000347021.1\|101729_101909_-	hypothetical protein	NA	NA	NA	NA
WP_004202492.1\|103599_103941_+	RamA family antibiotic efflux transcriptional regulator	D0R0F8	Streptococcus_phage	2.0e-06	29.8
WP_000105383.1\|104974_106411_+	glutathione synthase	NA	NA	NA	NA
WP_021546935.1\|106828_107833_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_001067855.1\|108099_108804_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001044210.1\|108809_108950_+	hypothetical protein	NA	NA	NA	NA
WP_001446887.1\|109435_110173_+	recombinase family protein	NA	NA	NA	NA
WP_000743213.1\|110169_110394_+	hypothetical protein	NA	NA	NA	NA
WP_001120888.1\|110604_112098_+\|transposase	IS91 family transposase	NA	NA	NA	NA
WP_112934501.1\|112128_113013_+	DUF3363 domain-containing protein	NA	NA	NA	NA
WP_065311137.1\|113229_114444_+	chloramphenicol/florfenicol efflux MFS transporter FloR	S4TR35	Salmonella_phage	3.2e-19	28.7
WP_001255015.1\|114471_114777_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_110459201.1\|115043_115361_-	tetracycline resistance protein	NA	NA	NA	NA
WP_001067858.1\|115385_116090_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_000480968.1\|116495_117332_+	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
WP_000844627.1\|117637_117880_+\|transposase	transposase	NA	NA	NA	NA
WP_000164043.1\|117921_118572_-	tetracycline resistance transcriptional repressor TetR(A)	NA	NA	NA	NA
WP_000804064.1\|118677_119877_+	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA
WP_000058717.1\|119908_120793_-	EamA family transporter	NA	NA	NA	NA
WP_001214976.1\|120930_121338_-	cysteine hydrolase	NA	NA	NA	NA
WP_031613424.1\|123187_123538_+	hypothetical protein	NA	NA	NA	NA
WP_029698059.1\|123914_124232_+	hypothetical protein	NA	NA	NA	NA
WP_000074418.1\|124282_124690_-	hypothetical protein	NA	NA	NA	NA
WP_000185304.1\|124719_125181_-	hypothetical protein	NA	NA	NA	NA
WP_001572393.1\|125517_125748_-	hypothetical protein	NA	NA	NA	NA
WP_015059496.1\|126409_126643_-	hypothetical protein	NA	NA	NA	NA
WP_000975182.1\|126864_127761_-	hypothetical protein	NA	NA	NA	NA
WP_001572389.1\|127763_128279_-	thermonuclease family protein	A0A1X6WF84	Pacmanvirus	2.1e-07	38.6
WP_000833382.1\|128493_129921_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	3.4e-100	52.3
WP_000220758.1\|129981_130149_+	hypothetical protein	A0A2D2W2Z9	Escherichia_phage	7.3e-07	50.9
WP_000078514.1\|130171_131491_+	DUF1173 family protein	NA	NA	NA	NA
WP_001572381.1\|131770_132976_-	hypothetical protein	NA	NA	NA	NA
WP_000193209.1\|132972_133791_-	DUF4942 domain-containing protein	NA	NA	NA	NA
WP_001426317.1\|134433_134814_+	hypothetical protein	NA	NA	NA	NA
WP_000490638.1\|134871_135537_+	hypothetical protein	NA	NA	NA	NA
WP_000034420.1\|136499_137291_-	sulfonamide-resistant dihydropteroate synthase Sul3	A0A0B5J4J5	Pandoravirus	1.2e-14	26.5
WP_001354008.1\|137759_138005_-	GrpB family protein	NA	NA	NA	NA
WP_000612791.1\|138042_138906_-	SDR family oxidoreductase	W8CYX9	Bacillus_phage	2.5e-05	31.0
WP_011264039.1\|139051_139291_-	macrolide transporter	A0A2K5B2B5	Erysipelothrix_phage	9.5e-08	46.2
WP_001067855.1\|139363_140068_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000939727.1\|140220_141042_-	lincosamide nucleotidyltransferase Lnu(F)	NA	NA	NA	NA
WP_032491824.1\|141173_141965_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA22	NA	NA	NA	NA
WP_001067855.1\|142963_143668_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_014837927.1\|143704_144832_-	DUF3883 domain-containing protein	NA	NA	NA	NA
WP_000248278.1\|144882_145110_-	hypothetical protein	NA	NA	NA	NA
WP_000951934.1\|145133_145325_+	hypothetical protein	NA	NA	NA	NA
WP_000587837.1\|145806_146349_-	AAA family ATPase	NA	NA	NA	NA
WP_000557454.1\|146361_147222_-	aminoglycoside N-acetyltransferase AAC(3)-IId	NA	NA	NA	NA
WP_001067858.1\|147538_148243_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_000027057.1\|148378_149239_+	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
WP_012372818.1\|149408_150164_+	16S rRNA (guanine(1405)-N(7))-methyltransferase RmtB1	NA	NA	NA	NA
WP_001067855.1\|150289_150994_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_049824851.1\|151003_151474_+	TetR family transcriptional regulator	A0A0R6PIB6	Moraxella_phage	5.3e-10	32.7
WP_014839978.1\|151493_152282_+	winged helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_014839979.1\|152281_152800_+	hypothetical protein	NA	NA	NA	NA
WP_014839980.1\|152804_153221_-	fosfomycin resistance glutathione transferase FosA3	Q2LI91	Bacillus_phage	2.0e-08	35.6
WP_001067855.1\|153606_154311_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_032623598.1\|155512_157243_+	peptidoglycan synthetase FtsI	NA	NA	NA	NA
WP_174402696.1\|157307_158165_+	LAP family class A beta-lactamase	Q1MVP3	Enterobacteria_phage	5.9e-92	60.7
WP_001067858.1\|159356_160061_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
WP_001235713.1\|160231_160789_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	7.0e-94	100.0
WP_000608644.1\|161352_162615_+\|transposase	IS1380-like element ISEc9 family transposase	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0

DBSCAN-SWA_2

261004 : 269282

Salmonella_phage(57.14%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000654806.1\|261004_261973_+\|transposase	IS5 family transposase	A0A1B0VFY5	Salmonella_phage	4.4e-176	94.1
WP_001000406.1\|262289_263825_-\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	4.8e-262	88.1
WP_000609174.1\|263874_264222_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZDM8	Stx2-converting_phage	2.7e-59	95.7
WP_001201739.1\|264218_264602_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	4.1e-13	36.3
WP_000070863.1\|264824_265001_-	hypothetical protein	NA	NA	NA	NA
WP_000096324.1\|264997_266689_-	DUF4942 domain-containing protein	J9Q747	Salmonella_phage	2.6e-67	31.0
WP_000114859.1\|266936_268100_-	hypothetical protein	A0A1P8DTT7	Salmonella_phage	1.3e-17	32.1
WP_001121575.1\|268469_269282_+	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1C9II58	Salmonella_phage	3.0e-45	38.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. NZ_AP023199

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1262 : 60798

Escherichia_phage(36.36%)

bacteriocin,transposase,protease,tRNA,integrase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001066954.1\|1262_2003_-\|integrase	tyrosine-type recombinase/integrase	I3WFA4	Macacine_betaherpesvirus	1.2e-24	57.6
WP_001312821.1\|2123_2312_-	hypothetical protein	NA	NA	NA	NA
WP_001312822.1\|2685_3588_-	antimicrobial resistance protein Mig-14	NA	NA	NA	NA
WP_000771475.1\|3656_4766_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_000280980.1\|5198_6152_-\|protease	omptin family outer membrane protease	NA	NA	NA	NA
WP_001298859.1\|7652_9194_+\|transposase	IS21-like element ISEc12 family transposase	K4I413	Acidithiobacillus_phage	1.7e-129	46.4
WP_001016257.1\|9208_9955_+	ATP-binding protein	K4HZD4	Acidithiobacillus_phage	5.0e-55	48.5
WP_174402698.1\|10008_10170_-\|transposase	transposase	NA	NA	NA	NA
WP_162842477.1\|10353_11566_+\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	2.7e-167	99.0
WP_001259759.1\|12747_12951_-\|bacteriocin	colicin V family bacteriocin	NA	NA	NA	NA
WP_014640552.1\|12928_13165_-	colicin V immunity protein	NA	NA	NA	NA
WP_001105066.1\|13628_13910_-	hypothetical protein	NA	NA	NA	NA
WP_000203272.1\|14267_14795_-	colicin B immunity protein	NA	NA	NA	NA
WP_001312845.1\|15038_15854_+\|bacteriocin	lipid II-degrading bacteriocin colicin M	NA	NA	NA	NA
WP_000864812.1\|15903_16257_-	colicin M immunity protein	NA	NA	NA	NA
WP_000016493.1\|16434_17226_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	2.7e-51	90.2
WP_000796228.1\|17222_17912_-	hypothetical protein	NA	NA	NA	NA
WP_000493379.1\|17955_18306_-	hypothetical protein	NA	NA	NA	NA
WP_000952217.1\|18850_19939_+	transcriptional repressor PifC	NA	NA	NA	NA
WP_000698737.1\|19940_22166_+	phage T7 exclusion protein	NA	NA	NA	NA
WP_000963206.1\|22215_23115_-	nucleotide-binding protein	NA	NA	NA	NA
WP_000111771.1\|23104_23395_-	hypothetical protein	NA	NA	NA	NA
WP_001261287.1\|23690_23921_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA
WP_001044768.1\|23917_24334_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA
WP_000350638.1\|24495_26634_-	AAA family ATPase	NA	NA	NA	NA
WP_000343085.1\|26987_27245_+	hypothetical protein	NA	NA	NA	NA
WP_000194575.1\|27244_27835_+	hypothetical protein	NA	NA	NA	NA
WP_000521603.1\|29845_30463_+	hypothetical protein	NA	NA	NA	NA
WP_001089727.1\|30755_31835_-	permease	NA	NA	NA	NA
WP_001175594.1\|31939_32263_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_001067855.1\|32796_33501_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_000844627.1\|35138_35381_+\|transposase	transposase	NA	NA	NA	NA
WP_039045916.1\|35412_36048_-	tetracycline resistance transcriptional repressor TetR(A)	NA	NA	NA	NA
WP_000804064.1\|36153_37353_+	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA
WP_000058717.1\|37384_38269_-	EamA family transporter	NA	NA	NA	NA
WP_001214976.1\|38406_38814_-	cysteine hydrolase	NA	NA	NA	NA
WP_001067855.1\|40433_41138_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001067855.1\|42807_43512_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001067855.1\|44831_45536_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
WP_001398199.1\|46846_47248_-	type II toxin-antitoxin system toxin endoribonuclease PemK	NA	NA	NA	NA
WP_000557619.1\|47180_47438_-	type II toxin-antitoxin system antitoxin PemI	NA	NA	NA	NA
WP_000616807.1\|47530_48184_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_001333237.1\|48281_48422_-	hypothetical protein	NA	NA	NA	NA
WP_000774297.1\|49122_49980_-	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
WP_001273588.1\|49972_50455_-	hypothetical protein	NA	NA	NA	NA
WP_001442103.1\|50447_50522_-	RepA leader peptide Tap	NA	NA	NA	NA
WP_000083845.1\|50753_51011_-	replication regulatory protein RepA	NA	NA	NA	NA
WP_001351576.1\|51294_51501_-	type I toxin-antitoxin system Hok family toxin	NA	NA	NA	NA
WP_001299730.1\|52124_52337_-	ANR family transcriptional regulator	NA	NA	NA	NA
WP_000139315.1\|52472_53033_-	fertility inhibition protein FinO	NA	NA	NA	NA
WP_000704513.1\|53135_53996_-	alpha/beta hydrolase	A2RQC8	Archaeal_BJ1_virus	9.7e-10	23.5
WP_000205749.1\|54054_54801_-	conjugal transfer pilus acetylase TraX	A0A077JBM8	Xanthomonas_phage	8.7e-07	29.7
WP_000986962.1\|54820_60091_-	conjugative transfer relaxase/helicase TraI	NA	NA	NA	NA
WP_000450520.1\|60172_60400_+	toxin-antitoxin system antitoxin VapB	NA	NA	NA	NA
WP_000911313.1\|60399_60798_+\|tRNA	tRNA(fMet)-specific endonuclease VapC	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage