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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
NZ_CP054439 Staphylococcus saprophyticus strain UTI-042y plasmid pUTI-042y-1, complete sequence 0 crisprs NA 0 0 0 0
NZ_CP054438 Staphylococcus saprophyticus strain UTI-042y chromosome, complete genome 1 crisprs WYL,csa3,DEDDh,cas3,DinG 0 1 7 0

Results visualization

1. NZ_CP054438
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
NZ_CP054438_1 1879564-1879669 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
NZ_CP054438_1 1.1|1879602|30|NZ_CP054438|CRISPRCasFinder 1879602-1879631 30 NC_049445 Acinetobacter phage AbTZA1, complete genome 32098-32127 5 0.833
NZ_CP054438_1 1.1|1879602|30|NZ_CP054438|CRISPRCasFinder 1879602-1879631 30 NC_049494 Acinetobacter phage vB_AbaM_PhT2, complete genome 25414-25443 6 0.8
NZ_CP054438_1 1.1|1879602|30|NZ_CP054438|CRISPRCasFinder 1879602-1879631 30 X53751 Clostridium botulinum C phage gene for C1 neurotoxin 986-1015 7 0.767
NZ_CP054438_1 1.1|1879602|30|NZ_CP054438|CRISPRCasFinder 1879602-1879631 30 NC_007581 Clostridium phage c-st, complete genome 76437-76466 7 0.767
NZ_CP054438_1 1.1|1879602|30|NZ_CP054438|CRISPRCasFinder 1879602-1879631 30 D90210 Clostridium phage c-st gene for botulinum C1 neurotoxin, complete cds 1093-1122 7 0.767
NZ_CP054438_1 1.1|1879602|30|NZ_CP054438|CRISPRCasFinder 1879602-1879631 30 X72793 Clostridium botulinum C phage BONT/C1, ANTP-139, ANTP-33, ANTP-17, ANTP-70 genes and ORF-22 8804-8833 7 0.767
NZ_CP054438_1 1.1|1879602|30|NZ_CP054438|CRISPRCasFinder 1879602-1879631 30 AP008983 Clostridium phage c-st genomic DNA, complete genome 76437-76466 7 0.767
NZ_CP054438_1 1.1|1879602|30|NZ_CP054438|CRISPRCasFinder 1879602-1879631 30 NZ_CP021285 Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence 21377-21406 8 0.733
NZ_CP054438_1 1.1|1879602|30|NZ_CP054438|CRISPRCasFinder 1879602-1879631 30 NZ_CP015940 Legionella pneumophila strain C8_S plasmid unnamed1, complete sequence 22228-22257 8 0.733
NZ_CP054438_1 1.1|1879602|30|NZ_CP054438|CRISPRCasFinder 1879602-1879631 30 NZ_CP021271 Legionella pneumophila strain D-7787 plasmid unnamed, complete sequence 20106-20135 8 0.733
NZ_CP054438_1 1.1|1879602|30|NZ_CP054438|CRISPRCasFinder 1879602-1879631 30 NC_006366 Legionella pneumophila str. Lens plasmid pLPL, complete sequence 38879-38908 8 0.733

1. spacer 1.1|1879602|30|NZ_CP054438|CRISPRCasFinder matches to NC_049445 (Acinetobacter phage AbTZA1, complete genome) position: , mismatch: 5, identity: 0.833

tatacactaatttcacattatatgtgaatt	CRISPR spacer
tttacactaatttcacattatatagtgatt	Protospacer
* *********************.  .***

2. spacer 1.1|1879602|30|NZ_CP054438|CRISPRCasFinder matches to NC_049494 (Acinetobacter phage vB_AbaM_PhT2, complete genome) position: , mismatch: 6, identity: 0.8

tatacactaatttcacattatatgtgaatt	CRISPR spacer
tttacactaatttcacgttatatagtgatt	Protospacer
* **************.******.  .***

3. spacer 1.1|1879602|30|NZ_CP054438|CRISPRCasFinder matches to X53751 (Clostridium botulinum C phage gene for C1 neurotoxin) position: , mismatch: 7, identity: 0.767

tatacactaatttcacattatatgtgaatt	CRISPR spacer
catactctaatttcacattatattgagaat	Protospacer
.**** *****************  ..* *

4. spacer 1.1|1879602|30|NZ_CP054438|CRISPRCasFinder matches to NC_007581 (Clostridium phage c-st, complete genome) position: , mismatch: 7, identity: 0.767

tatacactaatttcacattatatgtgaatt	CRISPR spacer
catactctaatttcacattatattgagaat	Protospacer
.**** *****************  ..* *

5. spacer 1.1|1879602|30|NZ_CP054438|CRISPRCasFinder matches to D90210 (Clostridium phage c-st gene for botulinum C1 neurotoxin, complete cds) position: , mismatch: 7, identity: 0.767

tatacactaatttcacattatatgtgaatt	CRISPR spacer
catactctaatttcacattatattgagaat	Protospacer
.**** *****************  ..* *

6. spacer 1.1|1879602|30|NZ_CP054438|CRISPRCasFinder matches to X72793 (Clostridium botulinum C phage BONT/C1, ANTP-139, ANTP-33, ANTP-17, ANTP-70 genes and ORF-22) position: , mismatch: 7, identity: 0.767

tatacactaatttcacattatatgtgaatt	CRISPR spacer
catactctaatttcacattatattgagaat	Protospacer
.**** *****************  ..* *

7. spacer 1.1|1879602|30|NZ_CP054438|CRISPRCasFinder matches to AP008983 (Clostridium phage c-st genomic DNA, complete genome) position: , mismatch: 7, identity: 0.767

tatacactaatttcacattatatgtgaatt	CRISPR spacer
catactctaatttcacattatattgagaat	Protospacer
.**** *****************  ..* *

8. spacer 1.1|1879602|30|NZ_CP054438|CRISPRCasFinder matches to NZ_CP021285 (Legionella pneumophila subsp. pneumophila strain Allentown 1 (D-7475) plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.733

tatacactaatttcacattatatgtgaatt	CRISPR spacer
tatacactaattcctcattatattgacaag	Protospacer
************.* ********  . *  

9. spacer 1.1|1879602|30|NZ_CP054438|CRISPRCasFinder matches to NZ_CP015940 (Legionella pneumophila strain C8_S plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

tatacactaatttcacattatatgtgaatt	CRISPR spacer
tatacactaattcctcattatattgacaag	Protospacer
************.* ********  . *  

10. spacer 1.1|1879602|30|NZ_CP054438|CRISPRCasFinder matches to NZ_CP021271 (Legionella pneumophila strain D-7787 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

tatacactaatttcacattatatgtgaatt	CRISPR spacer
tatacactaattcctcattatattgacaag	Protospacer
************.* ********  . *  

11. spacer 1.1|1879602|30|NZ_CP054438|CRISPRCasFinder matches to NC_006366 (Legionella pneumophila str. Lens plasmid pLPL, complete sequence) position: , mismatch: 8, identity: 0.733

tatacactaatttcacattatatgtgaatt	CRISPR spacer
tatacactaattcctcattatattgacaag	Protospacer
************.* ********  . *  

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1111363 : 1145503 35 Staphylococcus_phage(96.15%) tRNA NA
DBSCAN-SWA_2 1267273 : 1276395 7 uncultured_Mediterranean_phage(50.0%) tRNA NA
DBSCAN-SWA_3 1402699 : 1412662 11 uncultured_Mediterranean_phage(28.57%) NA NA
DBSCAN-SWA_4 1847993 : 1856468 9 Synechococcus_phage(16.67%) NA NA
DBSCAN-SWA_5 1888009 : 1941869 69 Staphylococcus_phage(54.39%) protease,tail,capsid,portal,integrase,terminase,plate,head,holin attL 1887445:1887463|attR 1933010:1933028
DBSCAN-SWA_6 2147529 : 2166263 14 uncultured_Caudovirales_phage(33.33%) NA NA
DBSCAN-SWA_7 2174564 : 2182114 9 Pandoravirus(16.67%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage