CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP054572	Pseudomonas sp. FDAARGOS_761 chromosome, complete genome	2 crisprs	DEDDh,DinG,WYL,csa3,cas3	0	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP054572_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP054572_1

5244970-5245083

Orphan

Consensus_repeat	Method
TCATACCTTGCCCTCCAGTTCTTTGGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP054572_1

>merge|NZ_CP054572|1|5244970-5245083|CRISPRCasFinder
TCATACCTTGCCCTCCAGTTCTTTGGCCACGCTTCTGGATGGAGAGCCTGTTGAACGGGATACGGAGCGGGATACGCTGTGCTGGCTCATACCTTGCCCTCCAGTTCTTTGGCC

>NZ_CP054572|1|1|5244970-5245083|CRISPRCasFinder
TCATACCTTGCCCTCCAGTTCTTTGGCC	ACGCTTCTGGATGGAGAGCCTGTTGAACGGGATACGGAGCGGGATACGCTGTGCTGGC
TCATACCTTGCCCTCCAGTTCTTTGGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054572.1\|WP_003084303.1\|5245963_5247118_-\|polyamine-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|183226
NZ_CP054572.1\|WP_003084339.1\|5234589_5235282_+\|amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223836
NZ_CP054572.1\|WP_003084271.1\|5256527_5257193_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP054572.1\|WP_003084301.1\|5247172_5248270_-\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP054572.1\|WP_003118763.1\|5238139_5239159_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225176
NZ_CP054572.1\|WP_003084290.1\|5251343_5252702_-\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_CP054572.1\|WP_031627657.1\|5239157_5239769_+\|thiol-disulfide-isomerase	unknown	unknown	gnl\|CDD\|239267
NZ_CP054572.1\|WP_009315025.1\|5236044_5236599_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054572.1\|WP_003112937.1\|5253773_5255150_+\|glutamine-synthetase	unknown	unknown	gnl\|CDD\|223252
NZ_CP054572.1\|WP_003112942.1\|5239873_5240377_+\|transcriptional-regulator	unknown	unknown	unknown
NZ_CP054572.1\|WP_003112945.1\|5235284_5235779_-\|DUF523-domain-containing-protein	unknown	unknown	gnl\|CDD\|224597
NZ_CP054572.1\|WP_003110711.1\|5240355_5241408_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|378890
NZ_CP054572.1\|WP_009315024.1\|5237367_5238120_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054572.1\|WP_073656392.1\|5236620_5237319_-\|2OG-Fe(II)-oxygenase	unknown	unknown	gnl\|CDD\|226274
NZ_CP054572.1\|WP_009315022.1\|5241518_5243906_+\|penicillin-acylase-family-protein	unknown	unknown	gnl\|CDD\|225241
NZ_CP054572.1\|WP_003084299.1\|5248688_5249792_-\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP054572.1\|WP_003084297.1\|5249907_5251278_-\|aspartate-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|180994
NZ_CP054572.1\|WP_003111119.1\|5257355_5258234_+\|N-carbamoylputrescine-amidase	unknown	unknown	gnl\|CDD\|274553
NZ_CP054572.1\|WP_009315019.1\|5255405_5256467_+\|polyamine-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270377
NZ_CP054572.1\|WP_003084285.1\|5252742_5253495_-\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|336781

Protein	Function_ID	Function_description	E-value
NZ_CP054572.1\|WP_003084303.1\|5245963_5247118_-\|polyamine-ABC-transporter-ATP-binding-protein	gnl\|CDD\|183226	PRK11607, potG, putrescine ABC transporter ATP-binding subunit PotG.	0
NZ_CP054572.1\|WP_003084339.1\|5234589_5235282_+\|amino-acid-ABC-transporter-permease	gnl\|CDD\|223836	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism].	3.29364e-79
NZ_CP054572.1\|WP_003084301.1\|5247172_5248270_-\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NZ_CP054572.1\|WP_003118763.1\|5238139_5239159_-\|alpha/beta-hydrolase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	3.48481e-56
NZ_CP054572.1\|WP_003084290.1\|5251343_5252702_-\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	5.71424e-158
NZ_CP054572.1\|WP_031627657.1\|5239157_5239769_+\|thiol-disulfide-isomerase	gnl\|CDD\|239267	cd02969, PRX_like1, Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.	0.00359192
NZ_CP054572.1\|WP_003084271.1\|5256527_5257193_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.54898e-08
NZ_CP054572.1\|WP_003112937.1\|5253773_5255150_+\|glutamine-synthetase	gnl\|CDD\|223252	COG0174, GlnA, Glutamine synthetase [Amino acid transport and metabolism].	1.09186e-161
NZ_CP054572.1\|WP_003112945.1\|5235284_5235779_-\|DUF523-domain-containing-protein	gnl\|CDD\|224597	COG1683, COG1683, Uncharacterized conserved protein [Function unknown].	2.14015e-67
NZ_CP054572.1\|WP_003110711.1\|5240355_5241408_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|378890	pfam12625, Arabinose_bd, Arabinose-binding domain of AraC transcription regulator, N-term. AraC is a bacterial transcriptional regulatory protein with a DNA-binding domain at the C-terminus, HTH_AraC, pfam00165, and this dimerization domain which harbours the arabinose-binding pocket at the N-terminus. AraC positively and negatively regulates expression of the proteins required for the uptake and catabolism of the sugar L-arabinose 1,2,3].	2.34355e-32
NZ_CP054572.1\|WP_003084299.1\|5248688_5249792_-\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	0
NZ_CP054572.1\|WP_073656392.1\|5236620_5237319_-\|2OG-Fe(II)-oxygenase	gnl\|CDD\|226274	COG3751, EGL-9, Predicted proline hydroxylase [Posttranslational modification, protein turnover, chaperones].	2.55626e-77
NZ_CP054572.1\|WP_009315022.1\|5241518_5243906_+\|penicillin-acylase-family-protein	gnl\|CDD\|225241	COG2366, COG2366, Protein related to penicillin acylase [General function prediction only].	0
NZ_CP054572.1\|WP_009315019.1\|5255405_5256467_+\|polyamine-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270377	cd13659, PBP2_PotF, The periplasmic substrate-binding component of an ABC putrescine transport system and related proteins; contains the type 2 periplasmic-binding fold. This group represents the periplasmic substrate-binding domain that serves as the primary polyamine receptor of ABC-type putrescine-preferential transporter from gram-negative bacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, and plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.8747e-164
NZ_CP054572.1\|WP_003084297.1\|5249907_5251278_-\|aspartate-aminotransferase-family-protein	gnl\|CDD\|180994	PRK07480, PRK07480, putative aminotransferase; Validated.	0
NZ_CP054572.1\|WP_003111119.1\|5257355_5258234_+\|N-carbamoylputrescine-amidase	gnl\|CDD\|274553	TIGR03381, putative_carbon-nitrogen_hydrolase, N-carbamoylputrescine amidase. Members of this family are N-carbamoylputrescine amidase (3.5.1.53). Bacterial genes are designated AguB. The AguAB pathway replaces SpeB for conversion of agmatine to putrescine in two steps rather than one. [Central intermediary metabolism, Polyamine biosynthesis].	0
NZ_CP054572.1\|WP_003084285.1\|5252742_5253495_-\|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein	gnl\|CDD\|336781	pfam07722, Peptidase_C26, Peptidase C26. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyze the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to pfam00117, but contain extensions in four loops and at the C-terminus.	3.1783e-108

>NZ_CP054572.1|WP_009315022.1|5241518_5243906_+|penicillin-acylase-family-protein
MKRTLTVIAVAVAAAAAGGAWYLHAKQPLRNGSLALAHLQAPVDVRYDERGVPHLYAQNQTDLYRALGYVHAQDRLFQMEMLRRLARGELAEVLGAKLVDTDRLFRTLRIRDHAAEYSARQDKQSQPWKVLEAYLDGVNQFQENNPAPLEFDLLGIPRRPFTPEDTLSIAGYMAYSFAAAFRTEPVLTYIRDELGSDYLRIFDLDWHPQGVLTPSGALGAGDWKDLGALARLSQQALEDAGLPQFEGSNAWVVAGSRTASGKPLLAGDPHIRFAAPAVWYEAQLSAPGFELYGHHQALNPFASLGHNRAFGWSLTMFQNDDLDLVAEKVNPDNPNQVWYQGKWVDLQSEEQEIAVKGAAPVKLTLRRSPHGPIVNDALGASSGKTPIAMWWAFLETENPVLDAFYQLNRADTLAKARAAASKIHSPGLNLVWANAAGDIGWWASAALPKRPEGVNPSFILDGSKGEADKSGFYPFADNPQEENPARGYIVSANFQPVPANGRPIPGYYNLADRGQWLDTQLADRGTKWNLDNSRALQLGNRTGYAPRLLAPLLPVLREVVDDAEGKRLVEQLAAWKGDYPVDSTAATLFNQLLFQIAESALHDELGDAFFDSLIATRAIDSALPRLAGDADSPWWDDRRTERRETRADIVRAAWNASLAHLRGTLGNDPSGWLWGKAHTLTHEHALGQQALLKRLLNVGPFAAPGTHEVPNNLSAKIGPAPWAVTYGPSTRRLVDFADPTHSLGINPVGQSGVPFDGHYDDQAEAYIEGHYLPQHYEENEVKANSKGVLVLEPKR
>NZ_CP054572.1|WP_003110711.1|5240355_5241408_-|AraC-family-transcriptional-regulator
MQDDPSTSPLTHSATLRRLLYEALDALGLDPTRVYRSVYRRIPLPPPTLGGRLVHDNAPLFWTELAAVTGDADIGLHLGEAMKPRLLDVVGYLLLSARDLEEALRSFVRFQHILSGGFAARLEVEGETARLILDINYLGYASLRQQIECLMLLFLKLLALISDDEFVAERIEFRHRAPPRLGEHRRLFGRLPLFSRPHDALVFSAALLRRPSRNANPDMHGVLTRHAEEQTRELSENRLLNRVRYLIELRLGEGYGLRQCAAELGLGSGALQRALAAGGASFRQVRDEVRRQRASEMLLAGRAIREVAKACGFAELSPFYRAFRRWHAAPPEQYRARLAKREEGYSTSGT
>NZ_CP054572.1|WP_003112942.1|5239873_5240377_+|transcriptional-regulator
MSLRPTLALLALVSLPLMAAQNDPQPSSKELMKEHQAQIQNDLADVDYKRKRIVEANMNLTDQEGEKFWPIYNTYRTESDKLSKETLKLLLDYAQAYNSGNVSDDQASKLIERVDDLQEDRLELRDKYVKRIAKNVSPKRAMRFLQIEIQLDAIATLEIGRQVPLVE
>NZ_CP054572.1|WP_031627657.1|5239157_5239769_+|thiol-disulfide-isomerase
MASLAPVFRVNAMTPRRKTLLVSLVGLLWAGGLLAAYWWFEIRYIRPFSEQTTLFSGDSLRLPAELAGPGPIRLVHFWDPACPCNVGNQQHLGELIERFAGKGVEFHVLQKPGSQGRLPDNLAALRPLAGLPGSEQLPASPAVAIWDRDGRLAYFGPYSEGAVCTSSNSFIEPILEALLQGRPVDATHTLAVGCYCPWPPEKG
>NZ_CP054572.1|WP_003118763.1|5238139_5239159_-|alpha/beta-hydrolase
MCSRAAEYPWVSPVARPRIDCSPEPPMSEAFNPDYLRQHLRPLAAAEADAAVLAYQAYYGLDLRSRHPRLQARLGSMAVDGRRLAVQAWLLPEARGSLLLMHGYYDHMGLYRHVVDWALGMGFSVLACDLPGHGLSEGERASIRDFAEYQAVFKGLLGQAAELDLAAPWHLCGQSTGGAILLDYLLHGGERPELGETILLAPLVRPRAWGWSKLSYRLLSPFVDSIPRRFSENSSDPQFLDFLREHDPLQPRTLPTAWVGALTRWVPRIERAPRRALSPLVVQGESDETVDWRHGLKVLREKFDEPRILLLEEARHHLANESEGLRRRYFDFLSDALGA
>NZ_CP054572.1|WP_009315024.1|5237367_5238120_+|hypothetical-protein
MRALLAFALLLVGLPALADPYQRLYQAAGWPDQRAHFSDALDAAQKRYQDKLPPALYQTLVDNSNRRFAPAEVDQRALNGLRENLPDSASPLNFFESPLGRKVVAAEVLATRRDQLLQHSNGLPRQTASQPRRALVKRLAQVLPAREAGAEVSLALAGVAADSLSQMLPGLPGLLGGGQTGQLLEGQRQRLVQQIGADLENTLLYVYRDLSDAELTQYVNFAESPAGRSYYQAALAALKAGLAVDQAVAP
>NZ_CP054572.1|WP_073656392.1|5236620_5237319_-|2OG-Fe(II)-oxygenase
MGRYCRHAADRLSRHRGGTLQWTMHINVNHPLLHRIVDELVDQGWSHQSIFMPERLTTRLAEECRTRAVAGDLTPAAIGRGDGQVIREGIRGDLTQWLEPGESEACDEYLGVMDNLRQALNASLFLGLEDFECHFALYPPGAYYQKHVDRFRDDDARTVSAVLYLNDAWLPEHGGALRLHLPQRQVDIQPTGGSLVVFMSAGTEHEVLPASRDRLSLTGWFRRRNESLLQLS
>NZ_CP054572.1|WP_009315025.1|5236044_5236599_+|hypothetical-protein
MLPTRSLLPFFLAPALLASAASQAAMEALDNDSLSQVTGQAGISLRLDLRAGAARVAWVDDGGSLSLRNLVIDNGCVKVGDCPDGRGGNIPLGAAQLGLSLPIFGVEQPTLALDVTTGSGGGQQLAISLPDLATINDQLIASGLPAQRIRLRVASDLYIGDNSIGRIELRDITDLRGTIKVWGH
>NZ_CP054572.1|WP_003112945.1|5235284_5235779_-|DUF523-domain-containing-protein
MQKVLVSRCLLGHLVRYDGGSHGPFDLLSRWHAQGRIVALCPEVAGGLPTPRPPAEIPGGQGGEVLDRLNRVFTVDGEDVSEAFLLGAEAAVELVRRHDIRMAVLKARSPSCGNLENYDGRFNGNRVAGEGVTAAALKRMGVLVFNEDELDRAAVCLAGLDAGG
>NZ_CP054572.1|WP_003084339.1|5234589_5235282_+|amino-acid-ABC-transporter-permease
MNSLQKLLEWLANLVELLGMAWPFLLQGAMYTVLFAAVSMVLGLILGFSVAVVRVTKVPVVSQIAAVYVSAFRGTPLLVQIFVLYYGLPSVGIEFTPVTAGILALTLNVAAYLSESMRGAILGIDKGQWEAGLSVGLTWGQTLWNIITPQALRLAVPSLSNSLISLIKDTSLISVITVTELMLATKEVIAETFQPLPLYLAAAGIYWLLSALFERVQKALENRLTAPLRR
>NZ_CP054572.1|WP_003084303.1|5245963_5247118_-|polyamine-ABC-transporter-ATP-binding-protein
MAIASGAYKKALEGNQQPKEVLVKIDRVTKQFDETLAVDTVSLTINKGEIFALLGGSGSGKSTLLRMLAGFERPTEGRIFLDGQDITDLPPYERPINMMFQSYALFPHMSVAQNIAFGLKQDGLPKAEIDERVAEMLKLVHMTQYAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRSQMQLELVEIIERVGVTCVMVTHDQEEAMTMAQRIAIMHLGCIEQIGSPMDIYETPASRLVCEFIGNVNLFDGVLVEDVQDHAVIACPQLENPIYIGHGISTRAEDKRITYALRPEKVMISAQKPDNLEHAGHNWAQGTVYDIAYLGGHSVYYIKLASGMIVQAFMANAERHVARPTWDQSVYISWYDDSGVVLQS
>NZ_CP054572.1|WP_003084301.1|5247172_5248270_-|polyamine-ABC-transporter-substrate-binding-protein
MQHSIGKTLLVAALATAIAGPVQAEKKSLHIYNWTDYIAPTTLKDFTKESGIDVSYDVFDSNETLEGKLVSGHSGYDIVVPSNNFLGKQIQAGAFQKLDKSKLPNWKNLDPALLKQLEVSDPGNQYAVPYLWGTNGIGYNVAKVKEVLGDQPIDSWAILFEPENMKKLAKCGVAFMDSGDEMLPAALNYLGLDPNTHDPKDYKKAEEVLTKVRPYVSYFHSSKYISDLANGNICVAFGYSGDVFQAAARAEEAGKGIDIQYVIPKEGANLWFDLMAIPADAKAADNAYAFIDYLLRPEVIAKVSDYVGYANAIPGARPLMDKSVSDSEEVYPPQAVLDKLYVSAVLPAKVLRLQTRTWTRIKTGK
>NZ_CP054572.1|WP_003084299.1|5248688_5249792_-|polyamine-ABC-transporter-substrate-binding-protein
MMKRFGKTLLALTLAGSVAGMAQAADNKVLHVYNWSDYIAPDTLEKFTKETGIKVVYDVYDSNEVLEAKLLAGKSGYDVVVPSNSFLAKQIKAGVYQKLDKSKLPNWKNLNKDLMHTLEVSDPGNEHAIPYMWGTIGIGYNPDKVKAAFGDNAPVDSWDLVFKPENIQKLKQCGVSFLDSPTEILPAALHYLGYKPDTDNPKELKAAEELFLKIRPYVTYFHSSKYISDLANGNICVAIGYSGDIYQAKSRAEEAKNKVTVKYNIPKEGAGSFFDMVAIPKDAENTEGALAFVNFLMKPEIMAEITDVVQFPNGNAAATPLVSEAIRNDPGIYPSEEVMKKLYTFPDLPAKTQRAMTRSWTKIKSGK
>NZ_CP054572.1|WP_003084297.1|5249907_5251278_-|aspartate-aminotransferase-family-protein
MNSQITNAKTREWQALSRDHHLPPFTDYKQLNEKGARIITKAEGVYIWDSEGNKILDAMAGLWCVNVGYGREELVQAATRQMRELPFYNLFFQTAHPPVVELAKAIADVAPEGMNHVFFTGSGSEANDTVLRMVRHYWATKGQPQKKVVIGRWNGYHGSTVAGVSLGGMKALHEQGDFPIPGIVHIAQPYWYGEGGDMSPDEFGVWAAEQLEKKILEVGEENVAAFIAEPIQGAGGVIVPPDTYWPKIREILAKYDILFIADEVICGFGRTGEWFGSQYYGNAPDLMPIAKGLTSGYIPMGGVVVRDEIVEVLNQGGEFYHGFTYSGHPVAAAVALENIRILREEKIIEKVKAETAPYLQKRWQELADHPLVGEARGVGMVAALELVKNKKTRERFTDKGVGMLCREHCFRNGLIMRAVGDTMIISPPLVIDPSQIDELITLARKCLDQTAAAVLA
>NZ_CP054572.1|WP_003084290.1|5251343_5252702_-|glutamine-synthetase
MTTKLDQLTSWLKERKITEVECLISDLTGIARGKISPTNKFIAEKGMRLPESVLLQTVTGDYVEDDIYYDLLDPADIDMVCRPDENAVFLVPWAIEPTAMVIHDTFDKLGNPIELSPRNILKRVLKMYADKGWRPIVAPEMEFYLTKRSDDPDYPLQAPVGRSGRQETGRQSFSIDAANEFDPLFEDMYDWCEAQGLDLDTLIHEEGTAQMEINFRHGDALDLADQILVFKRTMREAALKHNVAATFMAKPMTGEPGSAMHLHQSIVDVKTGKNIFSNADGTMSELFLHHIGGLQKFIPEVLPLFAPNVNSFRRFLPDTSAPVNVEWGEENRTVGLRVPDSSPENRRVENRLAGADANPYLALAASLLCGYIGMVEGIKPSAQVKGRGYERRNLRLPLTIEAALERMENCKPLEQYLGSKFISGYVAVKRAEHENFKRVISSWEREFLLLSV
>NZ_CP054572.1|WP_003084285.1|5252742_5253495_-|gamma-glutamyl-gamma-aminobutyrate-hydrolase-family-protein
MSRLPLIGVTACTKQIGLHPYHIAGDKYLRAVVNGAGGLPLIIPALGESIDQAALLDSVDGLLFTGSPSNVEPRHYSGPASEPGTLHDSDRDATTLPLVRAAIDAGIPVLGICRGFQEMNVAFGGSLHQKVHEVGTFMDHREPADQPLEVQYAPRHAMHVQPGGVLAGIGLPSEFQVNSIHGQGVDRLAPGLRVEALAPDGLVEAISVEGAKAFALGVQWHPEWQVLTNPNYLAIFQAFGKACGKRAGQR
>NZ_CP054572.1|WP_003112937.1|5253773_5255150_+|glutamine-synthetase
MSVPQRAVQLTEPSEFLKEHPEVQFVDLLIADMNGVVRGKRIERNSLNKVFEKGINLPASLFALDITGSTVESTGLGLDIGDADRICYPIPGTLSMEPWQKRPTAQLLMTMHELEGEPFFADPREVLRQVVARFTEMELTIVAAFELEFYLIDQENVNGRPQPPRSPISGKRPQSVQVYSIDDLDEYVECLQDIIDGARAQGIPADAIVAESAPAQFEVNLNHVNDALKACDHAVLLKRLVKNIAYDHEMDTTFMAKPYPGQAGNGLHVHISLLDKHGNNIFTSEDPEQNAALRHAIGGVLETLPASMAFLCPNVNSYRRFGSQFYVPNAPSWGLDNRTVALRVPTGSPDAVRLEHRVAGADANPYLLLAAVLAGVHHGLTNKVEPGAPIEGNSYEQMEPSLPNNLRDALRELDESEIMAKYIDPKYIDIFVACKESELEEFEHSISDLEYNWYLHTV
>NZ_CP054572.1|WP_009315019.1|5255405_5256467_+|polyamine-ABC-transporter-substrate-binding-protein
MPRLSALLFLALAPWLAQAEETLRVYNWNDYIDPQVLESFQKDTGIRVEYHTFATAEELDKALRSGEAIDVAVPSHDTLPALLKDNLLQPLDFTQLPNRSHLDRQLLSKLAAVDPDNRHAVPYLWGAVGLAINTPQAEAAYGGPLPNSWSLLFDASQSQRLKSCGISLLDAPDETLAILLNYQGRNLGRTAPSQVRRAAEALHGLRPNLRYVDSERYIADLEDGRLCLAMAWVGDALRAAKAGQPVSFEVPQEGSVLFIDNLVIPAGAQHPREAHRFIDYLMQPKIAAQITAATLYPSGNADAAGFLDPALRQQPGLYPDRDTSRRLFALETPPEKLRPVVDEIWKAFRGASH
>NZ_CP054572.1|WP_003084271.1|5256527_5257193_+|TetR/AcrR-family-transcriptional-regulator
MQPTSSIRKPRASSQARIAAILDAARGLLADEGIGGLTIYSVAERAEMPPSSVYHFFPSVPALLQGLTGEVHAAFRACLEQPVDHAGLRCWRDLSRIVEERMLAVYARDAAARQLILASHGLAEVTQADRQHDVQLGQAMRALFERHFLLPPLPTDIEIFSLAMELGDRVYALSVQRHGIIDARLAEEGMRVFDAYLGLYLPPILEKRSEPLTGFISDLNR
>NZ_CP054572.1|WP_003111119.1|5257355_5258234_+|N-carbamoylputrescine-amidase
MTRNVTVAATQMACSWDRPANIARAEKLVRQAAARGAQIILIQELFETPYFCQKPNPDYLQLATTVEENAAIAHFQALARELQVVLPISFFERAGRARFNSIAVIDADGGNLGVYRKSHIPDGPGYHEKYYFNPGDTGFKVWQTRYARIGVGICWDQWFPESARSMALLGAELLFYPTAIGSEPHDASISSRDHWQRVQQGHAGANLMPLVASNRIGREEQDGYDITFYGSSFIADPFGEKVEELNRTEEGILVHTFDLDALERTRSAWGVFRDRRPNLYGPLKTLDGSLES

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Crispr_ID: NZ_CP054572_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP054572_2

5602805-5602945

Orphan

Consensus_repeat	Method
GTTGTGACAATCTTTATTT	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP054572_2

>merge|NZ_CP054572|2|5602805-5602945|PILER-CR
GTTGTGACAATCTTTATTTATTGCAGTGCGCCCTTTTTTGGTGTAGCAGTGAGATTTGTGACAATCTCTATTTTTTAACGACTGTCTCGATAGGGCTCTAGAGCCCACGGAAGTCGCACATGGCTGTGACAATCTTTATTT

>NZ_CP054572|2|1|5602805-5602945|PILER-CR
GTTGTGACAATCTTTATTT	ATTGCAGTGCGCCCTTTTTTGGTGTAGCAGTGAGA
TTTGTGACAATCTCTATTT	TTTAACGACTGTCTCGATAGGGCTCTAGAGCCCACGGAAGTCGCACATG
GCTGTGACAATCTTTATTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054572.1\|WP_126433622.1\|5594609_5595748_+\|IS3-family-transposase	unknown	unknown	gnl\|CDD\|372671
NZ_CP054572.1\|WP_003097106.1\|5604555_5605179_-\|HAD-IB-family-phosphatase	unknown	unknown	gnl\|CDD\|273653
NZ_CP054572.1\|WP_003097095.1\|5611593_5612931_-\|dihydroorotase	unknown	unknown	gnl\|CDD\|181716
NZ_CP054572.1\|WP_003097130.1\|5587801_5589178_+\|F0F1-ATP-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|236447
NZ_CP054572.1\|WP_003097101.1\|5607798_5609823_+\|TRAP-transporter-permease	unknown	unknown	gnl\|CDD\|227012
NZ_CP054572.1\|WP_009316048.1\|5602996_5604202_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
NZ_CP054572.1\|WP_003097128.1\|5589219_5589645_+\|F0F1-ATP-synthase-subunit-epsilon	unknown	unknown	gnl\|CDD\|234796
NZ_CP054572.1\|WP_003097103.1\|5606764_5607724_+\|TAXI-family-TRAP-transporter-solute-binding-subunit	unknown	unknown	gnl\|CDD\|273982
NZ_CP054572.1\|WP_003097125.1\|5591143_5591653_+\|M23-family-metallopeptidase	unknown	unknown	gnl\|CDD\|366703
NZ_CP054572.1\|WP_003114651.1\|5589765_5591130_+\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	unknown	unknown	gnl\|CDD\|273482
NZ_CP054572.1\|WP_009316047.1\|5609819_5610218_+\|DUF1850-domain-containing-protein	unknown	unknown	gnl\|CDD\|227073
NZ_CP054572.1\|WP_003109143.1\|5605416_5606601_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|367049
NZ_CP054572.1\|WP_009316045.1\|5613490_5614387_-\|GTP-cyclohydrolase-I-FolE2	unknown	unknown	gnl\|CDD\|237466
NZ_CP054572.1\|WP_009316046.1\|5610304_5611549_+\|serine-hydrolase	unknown	unknown	gnl\|CDD\|224594
NZ_CP054572.1\|WP_003099663.1\|5612933_5613494_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|100039
NZ_CP054572.1\|WP_003097120.1\|5592509_5594345_+\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	unknown	unknown	gnl\|CDD\|234729
NZ_CP054572.1\|WP_009316056.1\|5591720_5592494_+\|DeoR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182457
NZ_CP054572.1\|WP_009316052.1\|5596390_5597386_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|223540
NZ_CP054572.1\|WP_009316050.1\|5599930_5600920_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054572.1\|WP_174707762.1\|5597907_5599770_+\|S8-family-peptidase	unknown	unknown	gnl\|CDD\|173793

Protein	Function_ID	Function_description	E-value
NZ_CP054572.1\|WP_126433622.1\|5594609_5595748_+\|IS3-family-transposase	gnl\|CDD\|372671	pfam13683, rve_3, Integrase core domain.	1.16725e-34
NZ_CP054572.1\|WP_003097106.1\|5604555_5605179_-\|HAD-IB-family-phosphatase	gnl\|CDD\|273653	TIGR01488, Phosphoserine_phosphatase, Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. This model represents a subfamily of the Haloacid Dehalogenase superfamily of aspartate-nucleophile hydrolases. Subfamily IA, B, C and D are distinguished from the rest of the superfamily by the presence of a variable domain between the first and second conserved catalytic motifs. In subfamilies IA and IB, this domain consists of an alpha-helical bundle. It was necessary to model these two subfamilies separately, breaking them at a an apparent phylogenetic bifurcation, so that the resulting model(s) are not so broadly defined that members of subfamily III (which lack the variable domain) are included. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences. [Unknown function, Enzymes of unknown specificity].	2.37762e-42
NZ_CP054572.1\|WP_003097095.1\|5611593_5612931_-\|dihydroorotase	gnl\|CDD\|181716	PRK09236, PRK09236, dihydroorotase; Reviewed.	0
NZ_CP054572.1\|WP_003097130.1\|5587801_5589178_+\|F0F1-ATP-synthase-subunit-beta	gnl\|CDD\|236447	PRK09280, PRK09280, F0F1 ATP synthase subunit beta; Validated.	0
NZ_CP054572.1\|WP_003097101.1\|5607798_5609823_+\|TRAP-transporter-permease	gnl\|CDD\|227012	COG4666, COG4666, TRAP-type uncharacterized transport system, fused permease components [General function prediction only].	0
NZ_CP054572.1\|WP_009316048.1\|5602996_5604202_-\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	4.632e-74
NZ_CP054572.1\|WP_003097128.1\|5589219_5589645_+\|F0F1-ATP-synthase-subunit-epsilon	gnl\|CDD\|234796	PRK00571, atpC, F0F1 ATP synthase subunit epsilon; Validated.	5.32557e-60
NZ_CP054572.1\|WP_003097103.1\|5606764_5607724_+\|TAXI-family-TRAP-transporter-solute-binding-subunit	gnl\|CDD\|273982	TIGR02122, 31_kDa_immunogenic_protein_precursor., TRAP transporter solute receptor, TAXI family. This family is one of at least three major families of extracytoplasmic solute receptor (ESR) for TRAP (Tripartite ATP-independent Periplasmic Transporter) transporters. The others are the DctP (TIGR00787) and SmoM (pfam03480) families. These transporters are secondary (driven by an ion gradient) but composed of three polypeptides, although in some species the 4-TM and 12-TM integral membrane proteins are fused. Substrates for this transporter family are not fully characterized but, besides C4 dicarboxylates, may include mannitol and other compounds. [Transport and binding proteins, Unknown substrate].	6.72741e-133
NZ_CP054572.1\|WP_003097125.1\|5591143_5591653_+\|M23-family-metallopeptidase	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	4.79821e-24
NZ_CP054572.1\|WP_003114651.1\|5589765_5591130_+\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	gnl\|CDD\|273482	TIGR01173, Bifunctional_glmU_protein_., UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Central intermediary metabolism, Amino sugars].	0
NZ_CP054572.1\|WP_009316047.1\|5609819_5610218_+\|DUF1850-domain-containing-protein	gnl\|CDD\|227073	COG4729, COG4729, Uncharacterized conserved protein [Function unknown].	1.33398e-59
NZ_CP054572.1\|WP_003109143.1\|5605416_5606601_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|367049	pfam02353, CMAS, Mycolic acid cyclopropane synthetase. This family consist of Cyclopropane-fatty-acyl-phospholipid synthase or CFA synthase EC:2.1.1.79 this enzyme catalyze the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid <=> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid.	1.64652e-140
NZ_CP054572.1\|WP_009316045.1\|5613490_5614387_-\|GTP-cyclohydrolase-I-FolE2	gnl\|CDD\|237466	PRK13674, PRK13674, GTP cyclohydrolase I FolE2.	1.77973e-120
NZ_CP054572.1\|WP_009316046.1\|5610304_5611549_+\|serine-hydrolase	gnl\|CDD\|224594	COG1680, AmpC, Beta-lactamase class C and other penicillin binding proteins [Defense mechanisms].	1.71411e-49
NZ_CP054572.1\|WP_003099663.1\|5612933_5613494_-\|hypothetical-protein	gnl\|CDD\|100039	cd00710, LbH_gamma_CA, Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.	5.99322e-83
NZ_CP054572.1\|WP_003097120.1\|5592509_5594345_+\|glutamine--fructose-6-phosphate-transaminase-(isomerizing)	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
NZ_CP054572.1\|WP_009316056.1\|5591720_5592494_+\|DeoR-family-transcriptional-regulator	gnl\|CDD\|182457	PRK10434, srlR, DNA-binding transcriptional repressor.	2.00096e-83
NZ_CP054572.1\|WP_009316052.1\|5596390_5597386_+\|ATP-binding-protein	gnl\|CDD\|223540	COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones].	5.97868e-44
NZ_CP054572.1\|WP_174707762.1\|5597907_5599770_+\|S8-family-peptidase	gnl\|CDD\|173793	cd04847, Peptidases_S8_Subtilisin_like_2, Peptidase S8 family domain in Subtilisin-like proteins. This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.	8.80618e-62

>NZ_CP054572.1|WP_009316050.1|5599930_5600920_-|hypothetical-protein
MPFGTQSAFDTYARNLYNAASEVFSLSRSKLNEALARGYGFRTYAALCAHLKNGPLESTRIFDHAAFLSSLARLEDWSKASMVAVLVEGHTFDIEITKWPAGTPRRNEPGDLETSYHISLNISEADGSKAQGRQPFTLPEFAKSVMDEKFRVDSGHTYRVTEGLYVSRFRNGRDTLRALVTEGRWGGEAFIYGTEEQLDDSRTLQWIKSSMAKAVLPTTSNRVVCDLYHPDKYDPNARRIEIRLAPQVLEFLDSTPLHFEIPAMEKRFFVMDDGRSHTVAEGVIVDGFWGSAVNSNGIAEAENPTPLEEVRVRLQIAVEESLSRAGYNG
>NZ_CP054572.1|WP_174707762.1|5597907_5599770_+|S8-family-peptidase
MLLDLEIWNIGSAQIRGAKLDELTDLIEQQGGNVYDRYNGPAISLLRIEVLGRLLIDLLSVEVIAVIDAPPQPDTFTREALELNLADFPPVEVLENAPVIGILDSGINAHPLLEGVVVGAIGVPEGLGTADEFGHGTRVAGVAAFGDLRAQLAEGGDLVCAARICSARVVNHRGGFDDHSLITNQMRDALTTLNREFGCRIFSISLADIKSAPYAGGKVGPWTATLDELARELDVLILVSAGNRMPRQGERQEESVTGYPDYLLEASNRFLEPSAALNVLTVGSIAHGNGIDQALQDAGVGIRPITGPYEPSPFTRVGPGIGGAIKPDLVDLGGTLVYDPLAGPRTGYDQPSAGILTLNHRYLEQMLRTASGTSYSTPMAAHKAAQLLGRFPEASANLLRALLVGAATVPDQAKQRLIHLDPEATRHICGNGFIGVERAVYSDDARVVLYAEDALPLDSFAVFEIPIPEPYLNQPGDRTITITLAYDPPVRHTRVDYAGVHMNYRMLRGVTLDEVVEHFRWRSRDEGAAPPIAPAKVCDMVPRPTLREKGSVQTSCVTFRRGELTHYGDTYYLVVRCESGWADFLNEQRYAVVVEIAHNAGVQIYQHVEQRVRVRPRILA
>NZ_CP054572.1|WP_009316052.1|5596390_5597386_+|ATP-binding-protein
MARGELMKKLLASYGRDEEFRAVAEQIILEEEQKNNRVLARSLRHTLDNATSANVRSSKQPPSQKLASLIPFPDAANDFVERVEPVHSHKDITLSHANTRVFDGLLQEYRRSEEIRRHGLAVRAKLLFCGPPGCGKTLCAEVFAAELGLPLFVVKLDRLISSYLGETAGNVRKIFEFAKRQPCVLFLDEFDALARSRDDSAEHNELRRVVNSLLLFIDRMQPRGFMIAATNLDSSLDPAIWRRFDEVIWFDKPDQALIKRFLNTKFKNVVINFDLDKYVDRLEGYSFAEIERVCIQTIKAPLIARRKGIAESDFTAAIADESRRRAGRARL
>NZ_CP054572.1|WP_126433622.1|5594609_5595748_+|IS3-family-transposase
MKKRFTEEQTLDFLKQAEAGVPVKKLCRRHGFSDASFYTWRAKFGGMTVADAKRLKDIELENSRLKKWLAEAHLDIESLKVVAPGKRVSPTARREAVQEMQARTGISERRACQLIGLSRSVLRYQPRASVQNTELQAQLVELAQERRRFGYRRLHILLRRAGVQVNHKRIYRLYRAAGLMVKRRRRRHGVAVERERLSLPSAPNQVWSMDFVFDALSTGRRIKCLTVVDDFTKESVGILVEHGISGFRVTRALDEMARFRGYPKAIRTDQGPEFTGKALDQWAYQRDIKLKLIQPGKPTQNAFIESFNGKFRDECLNEHWFCSLAEARIRIAAWRRDYNEHRPHSAIGNLTPAEFAASWRTRQQQLKQEKLISTPGPTN
>NZ_CP054572.1|WP_003097120.1|5592509_5594345_+|glutamine--fructose-6-phosphate-transaminase-(isomerizing)
MCGIVGAIAERNITPILIEGLKRLEYRGYDSAGVAVFDNEGRLQRCRRVGKVASLEEGLAGTPLLGRLGIAHTRWATHGAPTEGNAHPHFSSDELAVVHNGIIENHEPLRERLKGLGYVFTSQTDTEVIVHLLHHKLQSIGDLTLALKDAVKELHGAYGLAVISAAQPDRIVAARSGSPLVIGLGLGENFLASDQLALRQVTDRFIYLEEGDIAEIRRDSVRLWDVQGNDVQRETVQYHEGAEAADKGEYRHFMLKEIHEQPSVVQRTLEGRLGQNQVMVESFGPQAAELFAKVRNVQIVACGTSYHAGMVARYWLESLTGIPCQVEVASEFRYRKVAVQPDCLFVTISQSGETADTLAALRNAKELGFLSSVAICNVATSSLVRESDLTLLTQAGPEIGVASTKAFTTQLVALLLLTLGIGQVQKRLADGVEAELVDELRRLPTRLGEALAMNRTVEKVSELFAEKHHTLFLGRGAQFPVALEGALKLKEISYIHAEAYPAGELKHGPLALVDSDMPVVTVAPNNELVEKLKSNLQEVRARGGELVVFADEGAGIEAGEGTHVVGMPHIGDVLSPILYTIPLQLLSYHVAVLKGTDVDQPRNLAKSVTVE
>NZ_CP054572.1|WP_009316056.1|5591720_5592494_+|DeoR-family-transcriptional-regulator
MISKRNTPQRRHAILALLSEQGEVSVDALAKRFSTSEVTIRKDLAAMESHGLLLRRYGGAVPMPQELIGEAAQPVSPYKQAIGRAAAARIREHARIIIDSGSTTAAMIPELGHKPGLVVMTNSLNVVNALRELEHEPVLLMTGGTWDPHSESFQGQVAEQVLRSYDFDQLFIGADGIDLERGTTTFNELLGLSRVMAEVAREVIVMAEADKVGRRIPNQELPWSSIHTLITDERLEPSAREKITARGVTLICAPVEP
>NZ_CP054572.1|WP_003097125.1|5591143_5591653_+|M23-family-metallopeptidase
MPKPAKWIVLGLLIAGAVLPEWPRIPVEGASARDWNPRTFWFEPWGRSGVHKGIDIFARSGTPVRSASYGLVLYRGEIALGGKVVLVLAPKWRLHYYAHLDSLDAYPGQPVLAGSRLGAVGTTGNARGKPAHLHYAIITLLPYPWLADASTQGWKKMFYLDPNTVLPSR
>NZ_CP054572.1|WP_003114651.1|5589765_5591130_+|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU
MSLEIVILAAGQGTRMRSALPKVLHPIAGKPMLGHVIDCARQLQPERIHVVIGHGADLVRERMAADDLNFVLQAEQLGTGHAVAQALPFLSADQVLILYGDVPLIQLDTLQRLLAQVTPDQLSLLTVDMLDPTGYGRIVRDDQGAVQAIVEHKDATPAQRQIGEINTGILAVPGKRLADWLGRLSNDNAQGEYYLTDVIAMAVGDGLVVASAQPLDAMEVQGVNDRMQQAQLERHYQRLRAEELMRQGVTLLDPQRLDVRGEISVGRDVLIDVNVVLEGRVVIEDDVRIGPNCVIRDSVLRRGAVIKANSHLEGAELGEGSDAGPFARLRPGSVLGARAHVGNFVELKNARLGEGSKAGHLSYLGDAELGANCNIGAGTITCNYDGANKFRTELGDDVFIGSNNSLVAPLKIGDGATTAAGSTITHEVPAKNLAFGRARQKNLENWKRPEKIKK
>NZ_CP054572.1|WP_003097128.1|5589219_5589645_+|F0F1-ATP-synthase-subunit-epsilon
MAITVHCDIVSAEAEIFSGLVEMVIAHGALGDLGIAPGHAPLITDLKPGPIRLVKQGGEQEVYYISGGFLEVQPNMVKVLADTVVRAGDLDEAAAQEALKAAEKALQGKGAEFDYSAAAARLAEAAAQLRTVQQLRKKFGG
>NZ_CP054572.1|WP_003097130.1|5587801_5589178_+|F0F1-ATP-synthase-subunit-beta
MSSGRIVQIIGAVIDVEFPRDAVPSIYEALKVQGVETTLEVQQQLGDGVVRSIAMGSTEGLKRGLNVDSTGAAISVPVGKATLGRIMDVLGNPIDEAGPIGEEERWGIHREAPSYADQAGGNELLETGIKVIDLVCPFAKGGKVGLFGGAGVGKTVNMMELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMKDSNVLDKVALVYGQMNEPPGNRLRVALTGLTMAEKFRDEGRDVLLFIDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGVLQERITSTKKGSITSIQAVYVPADDLTDPSPATTFAHLDATVVLSRDIASLGIYPAVDPLDSTSRQLDPLVIGQDHYDTARGVQYVLQRYKELKDIIAILGMDELSEADKLLVARARKIQRFLSQPFFVAEVFTGSPGKYVSLKDTIAGFKGILNGDYDHLPEQAFYMVGGIEEAVEKAKKL
>NZ_CP054572.1|WP_009316048.1|5602996_5604202_-|MFS-transporter
MNQKIPPPSQKLDGLFLLALSMAVFFVGVTEFMLSSMLGPLAQAFHTTTSGAAWLISSYAFSYAIAAPLLGYFSDRMQRRKLLLLALILFAVDTLAIVIAPTLEIAVVLRVIGGIASAIIIPTTFALVAEVVAPQRQAGAMGQVMLGMTLGIAAGPALAGLLSDFFGWATPFLMVSCGCVLVFLMARQRLPVQAVAPRAEGHALGWCRQWSILRPLIAKGAWNGTGVAGLLLSGEVLRQRYGFSTAQIGVSIAAFGVGLAVGNLAAGYLRRYLKRDEDMLLLVLALLVLSMSTFMLLPLPLPVALFCLGAWGTALGLGAPAGTVVLASRSGPDKGMVLSFAETFNNIAILASVPLAVRLLELKGPPATLWVLGIGLGIGAWFTVLDWFASRRSDEALPLRD
>NZ_CP054572.1|WP_003097106.1|5604555_5605179_-|HAD-IB-family-phosphatase
MNETVSLETREVRFLSVFDFDGTLTYRDSFVPFLRFAFGNRVFVRRMLRMAGPSLAYLCRRIGRDDLKARLIATFLTDVPVHVLEERALAYQNRFWETLMRPHALTAVADQVSSGSTVTICSASPSLLLRPFAEKLGVHLIATELEVVDGVLTGRIVGRNCRRDEKVCRLERHYGPLTQYSLRAWGDSRGDTELLAAALERFWKPFR
>NZ_CP054572.1|WP_003109143.1|5605416_5606601_+|class-I-SAM-dependent-methyltransferase
MIAQLPSELLSLQLPLRIRIGDAQAFDLGPDPQVTMVIRDPSLLTEITHPSLDALGKAYVEKRLDIEGPISQVIGIGDALSEALGEPDGGAPPVRESHDKDTDAEAIHYHYDLSNDFYQLWLDPEMVYSCAYFETGKEDLATAQLAKLRHLCRKLRLQPGEKLLDVGCGWGGLARLAAREFGVEVTGITLSKEQLALGRKRVKAEGLEDRVTLKLLDYRDLPRDGRFDKVVSVGMFEHVGHANLGLYFQQLYDAVRPGGLVMNHGITSRYTDGRPVGKGAGDFIDRYVFPHGELPHLSLAVARMSEAGLEVVDVESLRLHYARTLDFWSANLEARLKEAARLVPEETLRIWRLYLAGCAYGFKRGWINLHQILAIRPHEDGSHELPWSRRDLYA
>NZ_CP054572.1|WP_003097103.1|5606764_5607724_+|TAXI-family-TRAP-transporter-solute-binding-subunit
MSLSRRFGLFTLAATVTFSTAVFAAPTFINILTGGTSGVYYPIGVGLSQIYGHDIQGAKTSVQATKASVENLNLLQAGRGELALALGDSVADAWNGVADAGFKAPLKKLRAIGNTYPNYIQVVASQASGIKTLADLKGKRISVGAPKSGTELNARAIFKAAGLSYEDMGKVEYLPYAESVELIKNRQLDATLQSSGLGMAAIRDLASTMPITFVAIPADVVAKIDSPAYHAASIPAGTYDGQEQDVPTVAIDNILVSHSGVSDELAYQMTKLMFDNLPRLVTAHAAAKDIALDKAAKNLPIPLHPGAERFYKEKGVLPE
>NZ_CP054572.1|WP_003097101.1|5607798_5609823_+|TRAP-transporter-permease
MSDHQNGLHLEAENWPRALFAVALAFSVFQVVTAAFPLISTQVLRAMHVGLLLLVVYISYPAFGIRRPWQPLAWLLGMAGLGTAVYQWVFEADLIQRSGELTQADMVVGVVLIVLVFEAARRVMGIALPIICALFLAYGLFGEHLPGDLAHRGYGFDQIVNQLSFGTEGLYGTPTYVSATYIYLFILFGAFLEQAGMIRLFTDFAMGLFGHRVGGPAKVSVFSSALMGTITGSGVANVVTTGQFTIPLMKRFGYKPAFAGGVEATASMGSQLMPPVMGAVAFIMAETINVPYVEIAKAALIPALLYFGSVYWMVHLEARRADLKGLPREQCPSAWGAVRERWFLLIPLLVLIALLFSGRTPLFSGTIGLALTAIVILGSAIILRVSSLGLRIAFWVALGLLCAGFFRLGIGVIFVVIAALALACWFVRGGRETLRICVRALAEGARHAIPVGIACTLVGVIIGVISLTGIATTFASYVLDLGRENLLLSLVLTMVTCLVLGMGIPTIPNYIITSSIAAPALLELGVPLIVSHMFVFYFGILADLTPPVALACFAAAPIAKERGLKISFWAVRIALAGFVVPFMAVYSPALMLQEGGWGATLYVTCKAVLAIGLWGMASIGYLQGPLAWWERLVAFAAGASLVLALPISDELGFVLGALVIGWHLWRQRAREAVA
>NZ_CP054572.1|WP_009316047.1|5609819_5610218_+|DUF1850-domain-containing-protein
MIALCLGMAGSVWATLPLQSFTLAWQHTVEKVLWEEDYRLSERGLLLEEARVRGSGAGMEIPEGAVLRDGAWHYRRVLPPLQPLRLGRTPEAGDYRICRQGRCDALARWIGPPDPERPAVELWACPIRDPSD
>NZ_CP054572.1|WP_009316046.1|5610304_5611549_+|serine-hydrolase
MRSCISVFRPALLALFVSASGSAGADAAVENPRIGRAADLYELIPEYQPDTYRNMDKVYPTRVIHKGTKVRPLPAGAAIAPRYRIGGEEYGVDDFMRRNRVGGVLVLKDGKVALERYGLGNDERTRWTSFSVVKSISSTLVGAAVQQGLLALDQPVDKYLPSLAGSAYQGVTVEQVLQMSSGVRWNETYRDPKSDRRQMFDAQLAERPGGILRLLASLTRQYPAGTHFTYSTGESHLQSELLHAATRIPVSDYLSERIWARMGMESDGFWQLESPAGQEIGSSGLSATLRDYGRFGQFVLEDGVIDGERILPEGWVDRASRVEASSHLAPGKLYDGEYALGYGYQWWTFPVGAKALPEHDGGAFEAQGIFGQYLYINRKEKIVAVVWSAWPKPEMDDREEETYAFLGAAVKALR
>NZ_CP054572.1|WP_003097095.1|5611593_5612931_-|dihydroorotase
MQSLLIRNARMVNEGQVREGDLLVRHGRIERIAGCLENCGASREIDAAGRYLLPGMIDDQVHFREPGYPQKGSIASESRAAVAGGITSFMDMPNTRPATLSLEALAEKKRLAAAHSVANYGFHFGVSRDNLDTVAALDPREVAAVKVFMGASTGDMLVDDLPTLERLFASVPTLLLSHCEDTPRIEANLARWRQRFGERIPAAAHPRIRDAEACYRSTALAVELAQRHGTLLHVLHLSTARELALFEDKPLCQKRITAEVCVHHLLFDDSDYARLGHLLKCNPAIKSREDRDALRRALAGNRLDVIGTDHAPHAWAEKQQAYPQAPAGLPLVQHALPALLELVREGWLSLATLVAKTSHRVAELFAIADRGFLREGYWADLVLVSELEHPALASAMPLLSRCNWTPFRHRAFHHRIDTTIVSGQLAWHAGRLSDDCQGLPLRFSR
>NZ_CP054572.1|WP_003099663.1|5612933_5613494_-|hypothetical-protein
MIRKNPSGDLPVIDESAYVDKTAIICGKVIIQANVFVGPYAVIRADEVDADGGMQPIVIGANSNIQDGVVIHSKSGAAVTIGEHSSIAHRSIVHGPCEVGDRVFIGFNSVLFNCRVGDGCVVRHNAVVDGCDLPAGFYVPSTERIGPRTDLASMPRVSVSASEFSEDVARTNVDLVRGYKSLQNEF
>NZ_CP054572.1|WP_009316045.1|5613490_5614387_-|GTP-cyclohydrolase-I-FolE2
MNALTLPDIARQTTTADLPLDWVGMQGIALPVQIGGQRVAAEADAGVSLDDPQARGIHMSRLYLALAELEQGELDLSCLRAVLQRFLDSHAGLSRRAYLRLRLAPLLRRPALVSPLSGWKRYPLVLDTRLEGDDFQAEVHLELTYSSTCPCSAALARQLIQERFDQDFAGQPLDHASVLAWLGSSAGIVATPHSQRSSAHLRIGLAEDCIGLPLEELADLGESALGTAVQTAVKRADEQAFALANGQNLMFCEDAVRRLHRALQGYPQASRFSVRVVHAESLHAHDAVAESHWQRGAA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

853887 : 862514

Pseudomonas_phage(87.5%)

coat

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009315229.1\|853887_854958_-	DNA cytosine methyltransferase	A0A0R6PG08	Moraxella_phage	1.1e-52	38.5
WP_083842333.1\|855109_855382_-	DNA-binding protein	NA	NA	NA	NA
WP_009315230.1\|855495_855711_+	hypothetical protein	NA	NA	NA	NA
WP_031627683.1\|856080_856371_+	DUF5447 family protein	Q56VP7	Pseudomonas_phage	1.8e-45	85.3
WP_003140508.1\|856886_857321_+	hypothetical protein	Q56VP5	Pseudomonas_phage	3.8e-63	100.0
WP_003115979.1\|857442_857694_+	hypothetical protein	NA	NA	NA	NA
WP_003125072.1\|857706_857955_+\|coat	phage coat protein B	Q56VP2	Pseudomonas_phage	2.0e-32	92.7
WP_031627684.1\|858090_859353_+	hypothetical protein	Q56VP1	Pseudomonas_phage	1.0e-44	54.1
WP_003114150.1\|859357_859714_+	DUF2523 domain-containing protein	Q56VP0	Pseudomonas_phage	7.9e-59	100.0
WP_009315234.1\|859717_860992_+	hypothetical protein	Q56VN9	Pseudomonas_phage	1.5e-200	87.3
WP_009315235.1\|861221_862514_+	hypothetical protein	Q56VN8	Pseudomonas_phage	4.1e-246	93.8

DBSCAN-SWA_2

2635695 : 2674964

Enterobacteria_phage(33.33%)

tail,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_023095587.1\|2635695_2637027_-\|plate	type VI secretion system baseplate subunit TssK	NA	NA	NA	NA
WP_009316131.1\|2637086_2637563_-	hypothetical protein	NA	NA	NA	NA
WP_003089493.1\|2637770_2638316_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
WP_003089494.1\|2638338_2639823_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
WP_003089495.1\|2639896_2640394_+	type VI secretion system tube protein Hcp	NA	NA	NA	NA
WP_009316132.1\|2640406_2640832_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
WP_009316133.1\|2640815_2642609_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
WP_009316134.1\|2642572_2643589_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
WP_009316135.1\|2643590_2646140_+	type VI secretion system ATPase TssH	H6X3M6	Enterobacteria_phage	3.2e-77	29.4
WP_003089506.1\|2646213_2646747_+	hypothetical protein	NA	NA	NA	NA
WP_003124577.1\|2646785_2647853_+	hypothetical protein	NA	NA	NA	NA
WP_009316136.1\|2647889_2649896_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	7.7e-42	29.5
WP_003131532.1\|2649906_2650443_+	toxin-antitoxin system YwqK family antitoxin	NA	NA	NA	NA
WP_003089513.1\|2650465_2650861_-	DUF4280 domain-containing protein	NA	NA	NA	NA
WP_023116885.1\|2651137_2651779_+	response regulator transcription factor	NA	NA	NA	NA
WP_174707735.1\|2652063_2653185_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_003131517.1\|2653601_2655917_-	xanthine dehydrogenase family protein molybdopterin-binding subunit	NA	NA	NA	NA
WP_003089521.1\|2655913_2656384_-	(2Fe-2S)-binding protein	NA	NA	NA	NA
WP_003104944.1\|2656649_2656886_-	hypothetical protein	NA	NA	NA	NA
WP_003089526.1\|2657180_2657423_+	DUF1654 domain-containing protein	NA	NA	NA	NA
WP_009316140.1\|2657488_2658640_-	alpha-hydroxy-acid oxidizing protein	NA	NA	NA	NA
WP_003124571.1\|2658736_2659657_-	LysR family transcriptional regulator	NA	NA	NA	NA
WP_003089535.1\|2659698_2660022_-	transcriptional repressor	NA	NA	NA	NA
WP_126573579.1\|2660202_2662491_-	acylase	NA	NA	NA	NA
WP_003103622.1\|2662613_2663945_-	lysine N(6)-hydroxylase/L-ornithine N(5)-oxygenase family protein	NA	NA	NA	NA
WP_003103620.1\|2664077_2664557_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA
WP_024947806.1\|2664720_2665716_+	FecR family protein	NA	NA	NA	NA
WP_003089547.1\|2665816_2666992_+	pyoverdine export/recycling transporter periplasmic adaptor subunit PvdR	NA	NA	NA	NA
WP_003139295.1\|2666991_2668983_+	pyoverdine export/recycling transporter ATP-binding/permease subunit PvdT	G9BWD6	Planktothrix_phage	1.2e-34	41.9
WP_020989355.1\|2668988_2670413_+	pyoverdine export/recycling transporter outer membrane subunit OmpQ	NA	NA	NA	NA
WP_009316148.1\|2670461_2672096_-	pyoverdine maturation tyrosinase PvdP	NA	NA	NA	NA
WP_003103610.1\|2672311_2673658_+\|tail	pyoverdine-tailoring dipeptidase-like protein PvdM	NA	NA	NA	NA
WP_003122677.1\|2673680_2674964_+\|tail	pyoverdine-tailoring periplasmic protein PvdN	NA	NA	NA	NA

DBSCAN-SWA_3

2979584 : 3036270

Pseudomonas_phage(53.85%)

tail,terminase,integrase,tRNA

attL 3000851:3000868|attR 3031932:3031949

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009314101.1\|2979584_2980097_+	hypothetical protein	L7TIE6	Pseudomonas_virus	1.7e-91	92.9
WP_009314100.1\|2980137_2980824_+	SOS response-associated peptidase family protein	A0A2K8I970	Pseudomonas_phage	5.9e-127	93.0
WP_009314099.1\|2980805_2981072_-	hypothetical protein	L7TP56	Pseudomonas_virus	1.4e-44	98.9
WP_009314098.1\|2981107_2981437_-	hypothetical protein	H2BDA1	Pseudomonas_phage	1.9e-46	88.1
WP_009314097.1\|2981433_2981811_-	hypothetical protein	J7HXL1	Pseudomonas_phage	1.1e-45	87.9
WP_009314096.1\|2981807_2982134_-	hypothetical protein	A0A1B2IBL3	Erwinia_phage	6.2e-26	52.3
WP_009314095.1\|2982130_2982760_-	glycoside hydrolase family 19 protein	J7I4M6	Pseudomonas_phage	8.7e-109	93.3
WP_009314094.1\|2982819_2983134_-	hypothetical protein	A0A0U4K5I1	Pseudomonas_phage	1.4e-51	93.2
WP_009314093.1\|2983133_2983928_-	hypothetical protein	A0A0S2SY45	Pseudomonas_phage	1.3e-88	70.1
WP_009314092.1\|2983946_2984612_-	hypothetical protein	A0A0S2SYG5	Pseudomonas_phage	8.7e-59	48.9
WP_004349473.1\|2984608_2984893_-	hypothetical protein	NA	NA	NA	NA
WP_009314091.1\|2984889_2988552_-\|tail	phage tail protein	A0A0S2SYC5	Pseudomonas_phage	0.0e+00	79.2
WP_009314090.1\|2988681_2989281_+	hypothetical protein	NA	NA	NA	NA
WP_009314088.1\|2989478_2990102_-\|tail	tail assembly protein	A0A2H4J1H0	uncultured_Caudovirales_phage	2.0e-57	57.1
WP_009314087.1\|2990144_2990495_-	hypothetical protein	NA	NA	NA	NA
WP_009314086.1\|2990532_2991291_-	C40 family peptidase	A0A0S2SY75	Pseudomonas_phage	6.3e-122	80.2
WP_009314085.1\|2991293_2991524_-	hypothetical protein	NA	NA	NA	NA
WP_009314084.1\|2991526_2992273_-\|tail	phage minor tail protein L	A0A0S2SY57	Pseudomonas_phage	3.9e-116	77.1
WP_009314083.1\|2992269_2992608_-\|tail	phage tail protein	A0A0S2SYI2	Pseudomonas_phage	1.1e-28	52.7
WP_009314082.1\|2992597_2995756_-\|tail	phage tail tape measure protein	A0A2H4J9A1	uncultured_Caudovirales_phage	1.4e-106	32.7
WP_004349462.1\|2995706_2995982_-	hypothetical protein	NA	NA	NA	NA
WP_009314081.1\|2996101_2996590_-	hypothetical protein	NA	NA	NA	NA
WP_009314080.1\|2996650_2997820_-	Ig-like domain-containing protein	A0A059VG08	Pseudomonas_phage	7.6e-58	39.4
WP_003116769.1\|2997881_2998289_-	hypothetical protein	NA	NA	NA	NA
WP_073672062.1\|2998285_2998681_-	hypothetical protein	A0A059VF88	Pseudomonas_phage	4.4e-26	48.3
WP_073672068.1\|2998680_2999055_-	hypothetical protein	A0A059VA70	Pseudomonas_phage	2.3e-24	48.4
WP_003116766.1\|2999059_3000052_-	hypothetical protein	A0A2H4IY91	uncultured_Caudovirales_phage	1.8e-84	49.9
WP_009314077.1\|3000048_3000567_-	hypothetical protein	A0A059VG19	Pseudomonas_phage	1.1e-37	53.4
WP_009314076.1\|3000624_3001068_-	hypothetical protein	NA	NA	NA	NA
3000851:3000868	attL	NA	NA	NA	NA
WP_009314075.1\|3001080_3002010_-	DUF2184 domain-containing protein	L7TMZ5	Rhizobium_phage	9.5e-104	60.2
WP_009314074.1\|3002019_3002475_-	DUF2190 family protein	A0A2R3UAC1	Siphoviridae_environmental_samples	6.4e-37	58.4
WP_009314073.1\|3002474_3003596_-	DUF2213 domain-containing protein	A0A2H4J6J7	uncultured_Caudovirales_phage	1.7e-94	66.3
WP_009314072.1\|3003598_3005407_-	DUF1073 domain-containing protein	A0A2H4J4I9	uncultured_Caudovirales_phage	4.7e-216	61.6
WP_009314071.1\|3005406_3006693_-\|terminase	terminase	A0A1B1P9C9	Acinetobacter_phage	3.4e-144	58.8
WP_009314070.1\|3006679_3007276_-\|terminase	terminase small subunit	H2BD75	Pseudomonas_phage	9.9e-46	59.9
WP_009314069.1\|3007330_3007549_-	DUF2158 domain-containing protein	NA	NA	NA	NA
WP_031627574.1\|3007611_3007902_-	hypothetical protein	A0A125RNL4	Pseudomonas_phage	1.3e-19	59.5
WP_009314067.1\|3007907_3008231_-	hypothetical protein	A0A125RNL3	Pseudomonas_phage	4.8e-39	76.4
WP_009314066.1\|3008346_3009216_-	hypothetical protein	J7HXH6	Pseudomonas_phage	3.9e-160	94.8
WP_031627573.1\|3009244_3009688_-	RusA family crossover junction endodeoxyribonuclease	H2BD71	Pseudomonas_phage	6.2e-53	69.2
WP_031627572.1\|3009680_3010094_-	hypothetical protein	NA	NA	NA	NA
WP_031627571.1\|3010221_3011232_-	hypothetical protein	NA	NA	NA	NA
WP_009314063.1\|3011235_3011832_-	hypothetical protein	NA	NA	NA	NA
WP_003116750.1\|3011871_3012102_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_079867890.1\|3012149_3012896_+	helix-turn-helix domain-containing protein	A0A2H4J6J6	uncultured_Caudovirales_phage	5.2e-44	47.6
WP_009314061.1\|3012919_3013519_+	hypothetical protein	NA	NA	NA	NA
WP_124074828.1\|3014212_3014524_-	hypothetical protein	A0A2H4J0J8	uncultured_Caudovirales_phage	9.1e-19	50.5
WP_009314060.1\|3014623_3014836_+	hypothetical protein	L7TKR9	Pseudomonas_virus	8.9e-34	97.1
WP_108913452.1\|3014938_3015523_-	acetyltransferase	NA	NA	NA	NA
WP_003099041.1\|3015753_3016125_+	carbon storage regulator CsrA	J7I430	Pseudomonas_phage	8.5e-64	100.0
WP_009314058.1\|3016700_3016847_+	hypothetical protein	J7HXJ0	Pseudomonas_phage	2.5e-11	100.0
WP_009314057.1\|3016830_3017052_+	hypothetical protein	H2BD53	Pseudomonas_phage	1.6e-33	98.6
WP_009314056.1\|3017048_3017258_+	hypothetical protein	NA	NA	NA	NA
WP_009314055.1\|3017268_3018177_+	YqaJ viral recombinase family protein	Q858E0	Salmonella_phage	1.1e-123	71.6
WP_009314054.1\|3018189_3019080_+	recombination protein RecT	Q858E1	Salmonella_phage	2.4e-104	73.6
WP_009314053.1\|3019086_3019287_+	hypothetical protein	J7I437	Pseudomonas_phage	1.9e-30	100.0
WP_009314052.1\|3019299_3020274_+	cell division protein FtsK	J7I0T4	Pseudomonas_phage	2.9e-79	54.5
WP_009314051.1\|3020277_3022023_+	AAA family ATPase	J7HXJ7	Pseudomonas_phage	3.5e-293	95.2
WP_009314050.1\|3022153_3022996_-	hypothetical protein	A0A0U1W0F5	Pseudomonas_phage	1.9e-159	100.0
WP_009314048.1\|3023431_3025522_+	DNA cytosine methyltransferase	A0A140IES2	Pseudomonas_phage	0.0e+00	94.3
WP_073672066.1\|3025987_3026305_-	hypothetical protein	NA	NA	NA	NA
WP_031627568.1\|3026743_3027178_-	hypothetical protein	NA	NA	NA	NA
WP_003116724.1\|3027735_3027972_+	DUF4224 domain-containing protein	A0A2H4JF29	uncultured_Caudovirales_phage	3.8e-17	53.2
WP_009314045.1\|3027973_3029041_+\|integrase	tyrosine-type recombinase/integrase	A0A2H4JDJ8	uncultured_Caudovirales_phage	1.4e-135	68.7
WP_003090386.1\|3029376_3030045_+	Bax inhibitor-1/YccA family protein	A0A2H4JFM9	uncultured_Caudovirales_phage	1.5e-90	82.1
WP_009314044.1\|3030155_3030551_+	sulfurtransferase complex subunit TusD	A0A2H4JA39	uncultured_Caudovirales_phage	5.9e-47	71.3
WP_003090389.1\|3030547_3030907_+	sulfurtransferase complex subunit TusC	A0A2H4J8C0	uncultured_Caudovirales_phage	1.4e-34	61.7
WP_003090391.1\|3030906_3031212_+	sulfurtransferase complex subunit TusB	NA	NA	NA	NA
WP_003090393.1\|3031208_3031544_+	TusE/DsrC/DsvC family sulfur relay protein	A0A2H4J8B6	uncultured_Caudovirales_phage	3.3e-38	69.4
WP_009314043.1\|3031540_3032524_+	glycosyl transferase family protein	A0A2H4JBY5	uncultured_Caudovirales_phage	1.2e-141	74.0
3031932:3031949	attR	NA	NA	NA	NA
WP_003108775.1\|3032611_3033586_+	glutathione S-transferase family protein	NA	NA	NA	NA
WP_009314040.1\|3033590_3034988_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_003097631.1\|3034989_3036270_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	8.2e-98	45.4

DBSCAN-SWA_4

4128410 : 4137439

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003092260.1\|4128410_4129451_-	recombinase RecA	A0A0S2MVG1	Bacillus_phage	1.5e-113	59.5
WP_003129950.1\|4129584_4130091_-	CinA family protein	B5TK85	Pseudomonas_phage	1.8e-56	76.0
WP_009313548.1\|4130238_4131246_+	TolB family protein	NA	NA	NA	NA
WP_003122151.1\|4131371_4133939_+	DNA mismatch repair protein MutS	A0A1V0SGG8	Hokovirus	2.4e-24	22.1
WP_003092272.1\|4134005_4134329_+	ferredoxin family protein	NA	NA	NA	NA
WP_003109327.1\|4134755_4135760_-	RNA polymerase sigma factor RpoS	G8CLC7	Synechococcus_phage	7.0e-36	37.3
WP_009313547.1\|4135864_4136758_-	peptidoglycan DD-metalloendopeptidase family protein	A0A0S2SXL7	Bacillus_phage	3.0e-06	34.3
WP_003098558.1\|4136803_4137439_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	1.0e-40	52.3

DBSCAN-SWA_5

4874410 : 4910654

Pseudomonas_phage(58.33%)

tail,holin,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_003113167.1\|4874410_4875610_-\|tRNA	tyrosine--tRNA ligase	NA	NA	NA	NA
WP_003129241.1\|4875894_4877238_+	peptidoglycan DD-metalloendopeptidase family protein	O03937	Lactobacillus_phage	3.0e-18	44.1
WP_003085271.1\|4877240_4878332_+	anhydro-N-acetylmuramic acid kinase	NA	NA	NA	NA
WP_003085254.1\|4878385_4878736_-	iron-sulfur cluster insertion protein ErpA	A0A2H4N7M3	Lake_Baikal_phage	3.0e-26	53.2
WP_003120826.1\|4878813_4879236_-	polymer-forming cytoskeletal protein	NA	NA	NA	NA
WP_003085249.1\|4879236_4879956_-	hypothetical protein	NA	NA	NA	NA
WP_009315203.1\|4879955_4880990_-	N-acetyl-gamma-glutamyl-phosphate reductase	NA	NA	NA	NA
WP_009315202.1\|4881280_4881703_+	protoporphyrinogen oxidase HemJ	NA	NA	NA	NA
WP_003085244.1\|4881719_4882688_+	nitronate monooxygenase	NA	NA	NA	NA
WP_009315201.1\|4882809_4883892_+	DUF805 domain-containing protein	NA	NA	NA	NA
WP_003085237.1\|4883952_4884753_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_003121853.1\|4884792_4886274_-	AAA family ATPase	U5XJW0	Phormidium_phage	3.9e-67	33.8
WP_003085225.1\|4886352_4886691_+	histidine triad nucleotide-binding protein	NA	NA	NA	NA
WP_003085224.1\|4886790_4887438_+	2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase	NA	NA	NA	NA
WP_003085223.1\|4887492_4888287_-	adenosylmethionine decarboxylase	NA	NA	NA	NA
WP_003085219.1\|4888606_4889029_-	OsmC family protein	NA	NA	NA	NA
WP_003085214.1\|4889300_4889945_+	cAMP-activated global transcriptional regulator CRP	NA	NA	NA	NA
WP_003085205.1\|4890006_4890843_-	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	2.1e-70	56.9
WP_003085203.1\|4890839_4891889_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	1.8e-111	57.8
WP_003101640.1\|4891890_4892496_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	6.0e-75	65.8
WP_003118930.1\|4892914_4893145_-	hypothetical protein	C8ZKF3	Pseudomonas_phage	1.4e-24	71.6
WP_003113177.1\|4893141_4893444_-	hypothetical protein	A0A0H5B141	Pseudomonas_phage	4.4e-34	71.0
WP_009315200.1\|4893443_4894496_-	hypothetical protein	A0A0H5AXZ9	Pseudomonas_phage	2.7e-62	52.5
WP_003118928.1\|4894591_4894822_-	hypothetical protein	A0A1W6JT87	Pseudomonas_phage	6.7e-19	65.3
WP_009315199.1\|4894802_4895138_-	hypothetical protein	NA	NA	NA	NA
WP_009315198.1\|4895137_4896229_-	hypothetical protein	A0A0S2SY45	Pseudomonas_phage	2.1e-46	36.6
WP_009315197.1\|4896252_4896990_-	hypothetical protein	NA	NA	NA	NA
WP_009315196.1\|4897276_4900891_-\|tail	phage tail protein	A0A0S2SYC5	Pseudomonas_phage	0.0e+00	54.8
WP_003117974.1\|4900949_4901552_-\|tail	tail assembly protein	A0A1V0E8A0	Vibrio_phage	6.5e-53	57.3
WP_003113184.1\|4901606_4902377_-	C40 family peptidase	A0A2D1GNP8	Pseudomonas_phage	4.2e-81	55.6
WP_003118922.1\|4902379_4903075_-\|tail	phage minor tail protein L	A0A1B0VNE0	Pseudomonas_phage	1.5e-69	50.2
WP_003113186.1\|4903082_4903424_-\|tail	phage tail protein	Q6UAW6	Klebsiella_phage	1.4e-17	40.0
WP_003161921.1\|4903416_4905255_-\|tail	phage tail tape measure protein	A0A0S2SYD9	Pseudomonas_phage	3.4e-28	35.8
WP_003113188.1\|4905301_4905556_-	hypothetical protein	A0A2H4PI34	Pseudomonas_phage	6.3e-10	38.4
WP_004352265.1\|4905585_4905933_-\|tail	phage tail assembly chaperone family protein, TAC	NA	NA	NA	NA
WP_003113190.1\|4905944_4906439_-	hypothetical protein	A0A286S1Q8	Klebsiella_phage	1.4e-45	56.5
WP_003118919.1\|4906754_4907012_-	hypothetical protein	A0A125RNP3	Pseudomonas_phage	8.3e-18	64.6
WP_009315195.1\|4907008_4907371_-	hypothetical protein	NA	NA	NA	NA
WP_003117966.1\|4907367_4907997_-	glycoside hydrolase family 19 protein	A0A125RNP1	Pseudomonas_phage	4.2e-87	78.5
WP_073652111.1\|4908012_4908456_-\|holin	holin	B5TK61	Pseudomonas_phage	4.2e-25	50.9
WP_003085135.1\|4908818_4909178_-	hypothetical protein	NA	NA	NA	NA
WP_003085132.1\|4909225_4909426_-	repressor PtrB	W6ATC1	Enterobacter_phage	3.7e-05	58.3
WP_003109047.1\|4909883_4910654_+	helix-turn-helix transcriptional regulator	A0A1B0Z078	Pseudomonas_phage	7.9e-72	59.0

DBSCAN-SWA_6

4945425 : 4960269

Caulobacter_phage(12.5%)

transposase,integrase

attL 4951357:4951373|attR 4965946:4965962

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_009315186.1\|4945425_4947420_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	3.8e-73	40.7
WP_003085035.1\|4947499_4949353_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.2e-36	33.8
WP_009315185.1\|4949459_4953197_+	bifunctional diguanylate cyclase/phosphodiesterase	A0A127AWB9	Bacillus_phage	4.8e-13	35.4
4951357:4951373	attL	NA	NA	NA	NA
WP_174707752.1\|4954016_4955393_+\|transposase	IS30-like element ISPa37 family transposase	W5R8L2	Staphylococcus_phage	1.8e-42	33.4
WP_083842330.1\|4955557_4956121_+\|integrase	site-specific integrase	A0A1L7DQ84	Ralstonia_phage	2.4e-17	40.8
WP_174707753.1\|4956113_4957252_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	1.7e-46	38.7
WP_174707754.1\|4957668_4957920_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_009315181.1\|4957912_4959124_+	DNA cytosine methyltransferase	M1PSQ0	Streptococcus_phage	9.4e-35	29.8
WP_009315180.1\|4959120_4960269_+	DNA (cytosine-5-)-methyltransferase	A0A1P8DJM9	Virus_Rctr41k	2.0e-34	39.4
4965946:4965962	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP054572

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection