CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP040094	Nostoc sp. TCL240-02 chromosome, complete genome	33 crisprs	cas3,csa3,cas4,cas6,RT,cas1,cas2,csx3,WYL,csm6,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cas14j,c2c5_V-U5,PD-DExK,Cas9_archaeal,DEDDh,c2c8_V-U2,Cas14c_CAS-V-F,csm5gr7,csm4gr5,csm3gr7,csm2gr11,csc2gr7,csc1gr5,2OG_CAS	3	17	13	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040094_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040094_1

527053-527151

Orphan

Consensus_repeat	Method
GTTGAGCCTCAAAAGGTCAACATCGAGCCTCAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040094_1

>merge|NZ_CP040094|1|527053-527151|CRISPRCasFinder
TTTGAGCCTCAGAAGGTCAAAGTTGAGCCTCAAAAGGTCAACATCGAGCCTCAGAATGGTCAACGCCGAGCCTCATAAGGTCAACGTCGAGCCTCAAAA

>NZ_CP040094|1|1|527053-527151|CRISPRCasFinder
TTTGAGCCTCAGAAGGTCAAAGTTGAGCCTCAAAA	GGTCAACATCGAGCCTCAGAATGGTCAAC
GCCGAGCCTCATAAGGTCAACGTCGAGCCTCAAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040094.1\|WP_174708310.1\|518456_519761_+\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|129116
NZ_CP040094.1\|WP_174708322.1\|538912_539365_+\|8-oxo-dGTP-diphosphatase-MutT	unknown	unknown	gnl\|CDD\|239517
NZ_CP040094.1\|WP_174708309.1\|518261_518423_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_163934571.1\|532176_532731_+\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854
NZ_CP040094.1\|WP_174708318.1\|530722_531379_-\|(2Fe-2S)-ferredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|239278
NZ_CP040094.1\|WP_174708319.1\|531437_531701_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174708320.1\|533260_536524_+\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
NZ_CP040094.1\|WP_174708317.1\|529839_530262_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174708311.1\|519913_520888_+\|phosphate/phosphite/phosphonate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|225762
NZ_CP040094.1\|WP_012412054.1\|517400_517832_+\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|223979
NZ_CP040094.1\|WP_174708314.1\|522779_523253_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174708312.1\|521017_521752_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|226164
NZ_CP040094.1\|WP_174713501.1\|525412_526681_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP040094.1\|WP_174708321.1\|538319_538664_+\|DUF760-domain-containing-protein	unknown	unknown	gnl\|CDD\|368489
NZ_CP040094.1\|WP_174708316.1\|527302_529276_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379062
NZ_CP040094.1\|WP_174713502.1\|529503_529737_-\|ribbon-helix-helix-protein,-CopG-family	unknown	unknown	unknown
NZ_CP040094.1\|WP_174708313.1\|521900_522695_+\|phosphonate-ABC-transporter,-permease-protein-PhnE	unknown	unknown	gnl\|CDD\|273441
NZ_CP040094.1\|WP_114081492.1\|537103_538060_+\|RNA-polymerase-sigma-factor,-RpoD/SigA-family	unknown	unknown	gnl\|CDD\|180963
NZ_CP040094.1\|WP_174708308.1\|517942_518251_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174708315.1\|523289_523724_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP040094.1\|WP_174708310.1\|518456_519761_+\|pentapeptide-repeat-containing-protein	gnl\|CDD\|129116	TIGR00004, RutC_family_protein, reactive intermediate/imine deaminase. This protein was described initially as an inhibitor of protein synthesis intiation, then as an endoribonuclease active on single-stranded mRNA, endoribonuclease L-PSP. Members of this family, conserved in all domains of life and often with several members per bacterial genome, appear to catalyze a reaction that minimizes toxic by-products from reactions catalyzed by pyridoxal phosphate-dependent enzymes. [Cellular processes, Other].	1.10723e-55
NZ_CP040094.1\|WP_174708321.1\|538319_538664_+\|DUF760-domain-containing-protein	gnl\|CDD\|368489	pfam05542, DUF760, Protein of unknown function (DUF760). This family contains several uncharacterized plant proteins.	5.79462e-39
NZ_CP040094.1\|WP_163934571.1\|532176_532731_+\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	1.62607e-47
NZ_CP040094.1\|WP_174708318.1\|530722_531379_-\|(2Fe-2S)-ferredoxin-domain-containing-protein	gnl\|CDD\|239278	cd02980, TRX_Fd_family, Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.	1.27579e-19
NZ_CP040094.1\|WP_174708320.1\|533260_536524_+\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
NZ_CP040094.1\|WP_174708311.1\|519913_520888_+\|phosphate/phosphite/phosphonate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|225762	COG3221, PhnD, ABC-type phosphate/phosphonate transport system, periplasmic component [Inorganic ion transport and metabolism].	1.90733e-70
NZ_CP040094.1\|WP_012412054.1\|517400_517832_+\|NUDIX-hydrolase	gnl\|CDD\|223979	COG1051, COG1051, ADP-ribose pyrophosphatase [Nucleotide transport and metabolism].	2.35517e-39
NZ_CP040094.1\|WP_174708312.1\|521017_521752_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|226164	COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism].	3.37399e-101
NZ_CP040094.1\|WP_174713501.1\|525412_526681_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	2.76955e-17
NZ_CP040094.1\|WP_174708316.1\|527302_529276_+\|ATP-binding-protein	gnl\|CDD\|379062	pfam13191, AAA_16, AAA ATPase domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily.	2.33863e-06
NZ_CP040094.1\|WP_174708322.1\|538912_539365_+\|8-oxo-dGTP-diphosphatase-MutT	gnl\|CDD\|239517	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.	2.09626e-52
NZ_CP040094.1\|WP_174708313.1\|521900_522695_+\|phosphonate-ABC-transporter,-permease-protein-PhnE	gnl\|CDD\|273441	TIGR01097, PhnE, phosphonate ABC transporter, permease protein PhnE. Phosphonates are a class of compound analogous to organic phosphates, but in which the C-O-P linkage is replaced by a direct, stable C-P bond. Some bacteria can utilize phosphonates as a source of phosphorus. This family consists of permease proteins of known or predicted phosphonate ABC transporters. Often this protein is found as a duplicated pair, occasionally as a fused pair. Certain "second" copies score in between the trusted and noise cutoff and should be considered true hits (by context). [Transport and binding proteins, Anions].	5.89982e-90
NZ_CP040094.1\|WP_114081492.1\|537103_538060_+\|RNA-polymerase-sigma-factor,-RpoD/SigA-family	gnl\|CDD\|180963	PRK07405, PRK07405, RNA polymerase sigma factor SigD; Validated.	0

>NZ_CP040094.1|WP_174713501.1|525412_526681_+|tetratricopeptide-repeat-protein
MLTTLLSNASLEGKWRAVALDWRGYIYSQSNQYSKALEDFTEAIKLAPEEVEYLTVRGMTYCQMQRYPEALLDFNRIIQLNPNYQWAIANRGVTYRLMYRYDEALQDFNRAIELDPNDQWALAHRGVTYCYMQCYPESLADLDSAIKLDHNYQWAIASRGDTYRYMQRYNEALQDFNRAIELDANFQWAPATGFRGFIYRQMQRYSQATQDLDTSVVANPNYQWVLARRGDTYRKLQRYSEALQDLNRAIELGPKDDWSLFKRGSIYFTLQQYNQALADFSHAIDLKSNDDWYLYQRALTYQALNQADTARTDLALAIKLAKQHYEKNAKDSRNAFNLALYYLAAHYIQPAEQLYRYTLSQGASLERIRIAIQDLNDFLNIFPNHLQATSIQQLLQSSLNLGDGILKLADSNPASPKSLGIH
>NZ_CP040094.1|WP_174708315.1|523289_523724_-|hypothetical-protein
MRLDVDLLRLDVDLLRLDVDLLRLDVDLLRLDVDLLRLDVDLLRLDVDLLRLDVDLLRLDVDLLRLDVDLLRLNVDLLRLDVDLLRLDVDLLRLDVDLLRLKNALAIKNCGYTDKTHLRGFQESLDTKCEKGITMLCPYKLCVF
>NZ_CP040094.1|WP_174708314.1|522779_523253_+|hypothetical-protein
MAENRISASLAPADKEAVMQAIATIREKLPFLVDLTPEDRRTMLKMGDKSRAFVSKALEVATQNPNFLPRYFDLEEMRRDLEIYEDLYPVLLSLTQLQELVDDTCITAASEAYAAALAVYSYAKASGDVAGLDAVIDEMGRRFNRRSKKKQSEVPVS
>NZ_CP040094.1|WP_174708313.1|521900_522695_+|phosphonate-ABC-transporter,-permease-protein-PhnE
MSSFFKLKRLRFYPWLSSLLISLIVVVVYGWALRGLKLDFELLSSSWPYITDFITRLFPPDWKVLDIAVKALIETVQMSLWGTTIGAILSVPIAIASASNIAPGWLRSLANLLQNTVRSVPSIILGLIFVAATGLGAPAGTLALGIYTIGYLAKFYQQAIEAVDPRSLESLQVIGASKLQIAQYGILPQVLPLGLGYTFWMFEYNIRAASVLGVVGAGGIGFQLKSYIDGFEYTKATTMMLVLLVVVTVIDAFSSQLRHRLDSM
>NZ_CP040094.1|WP_174708312.1|521017_521752_+|ATP-binding-cassette-domain-containing-protein
MNDYVIECHNLETAYAPSLNRPILNGINCQIKRGEFVVLLGLNGAGKSTLLRSLVGLVPSARGELLVNNVEMNSRTLPKIRRDIGMLFQGGGLIRQLSALENVLSGCLGKRTTWQTLLGFSKRDRILALELLEQLGLGELAFQKTSQLSGGQQQRVAIARTLIQSPQILLVDEPITGLDVVASQQVMQTLSQLHTQQGMTIVAVLHDLGIAEKYAQKAIVLDAGRVVYQGFCDNLQAQFAKVSA
>NZ_CP040094.1|WP_174708311.1|519913_520888_+|phosphate/phosphite/phosphonate-ABC-transporter-substrate-binding-protein
MSVKKKSLLGAGAAFAVLTGLVVSTVGAMQATIANPTANQQTPRLLAQGLKTLTIVFPSRADSTDLQNKANAVGAFLSKELGIPVVAQVGDDTAAVEALRANRADVAFLSSRPALKAKQLANASLYLAEVRSTYSGRYTYSSTFVVPKNSPLKTQNSTKATLEQLRGKRIAFTSPTSGSGFIIPVAELVKQKFVPNRDRLDDFFGQVSYGGNYSKALQAVVRGQADVAVVSEYALNPPYITAQEKNQLRVLHKITGVPAHGIAIDNDVPAPTREKIINALLKLNQSQNNKLLSDLYNSTELVRVDHDRHLATIREALQIAGIEP
>NZ_CP040094.1|WP_174708310.1|518456_519761_+|pentapeptide-repeat-containing-protein
MDAEELLEKYAAGGRQFTKNRQGIDLKGANLSDIDLSKANWNGADLSDANLTMAKLNSTSLSKASLTNANLSGIEGSSINLSWADLNGADLSWSTLSSANLNYANLEQGNLTNVDLSSATMIYANLDIANLCGANLSSADLTAASLAEANLSKANLTKADLGEAYLIGANLTLANLTEAILQSAKLQRNIFHRAYLHKVDLSGMNLAGIDFTAASLQSTNLKKVFLQGANLEKANMRWANLIQANLDGANLRRADLTGADIYGATFKDADLTGAIMPDGEVYKPIAAEAEIGKQETSLKKVISMTRKVINTDNAPAPVGPYNQAIAASGQFLFIAGQVAIDPRLGDVVYTDDVKKQTEQVLANLEAILTAAGATFQDVVKTTVFLADMNDFAAVNAIYAKYFPENTAPARACVQVSRLPKDVLVEIDAIAVING
>NZ_CP040094.1|WP_174708309.1|518261_518423_+|hypothetical-protein
MQFVVTVLYECDRNADLMALCDTSEVGVRGTNREGRKGREGRGEKNTYDTKFL
>NZ_CP040094.1|WP_174708308.1|517942_518251_-|hypothetical-protein
MNIKEILLQQIESSSDVLLAETLDFLRFLKTKPTTEEISLDLSTEKNDDTSNHQTKPEIKEATPILRASKAEDLLKFTGTWQGDDFEECLQLVYKTRSQAEF
>NZ_CP040094.1|WP_012412054.1|517400_517832_+|NUDIX-hydrolase
MTYRNPAPTVDIIIELVDRPHRPIVLIERHNLPLGWAIPGGFVDYGEAVEVAARREAEEETGLQVELVEQLLVYSDPNRDPRQHTISIVFLATATGEPKAGDDAKGVGIFEYWCVPGNLCFDHDRILRDYWRYRHYGIRPRLG
>NZ_CP040094.1|WP_174708316.1|527302_529276_+|ATP-binding-protein
MNTQDKPKSLQDIVKQRQQSNFVGREDQINRFRQNLALPVEDNRRCFLFNIYGQGGIGKTTLLRQFCKIADEAKMISAYVDEVEKTIPEVMDRLAKELEEQGYKLTQFSDRYKVYCQKCQELETDPDAPQGFSAFVGKTIVKTGVHLARRVPVGGAVFDIVDEDALANQAGEWASYIAKKITNKDEVQLVKEPKEVLTPLFLQDISKIADKTPLILFFDTSERTGEFLDNWLREIFENQHGKVSANILIIIAGRQELDKNDWASYEELIVRLPLEPFTEEEARQYLTRKGITDNRIIEEIVNVSGNLPLLMEMLADAHPNDPNQVIEPSSSAVKSFLRWIDDPKRRQMALDAAIPRCLNRDVIAKLRSEEEADELFNWLKETSFLKEHINGWVYHDVVKTQMLCHKRLSSPQGWADIHGKLAEYYDSLRNDLQLEEDNKQRDPSWQSHTLNVLYHKLCQSPQRNLFIALNEFLALLKNQPTFAQQYAKIMLQAGKDGDSTEVKYWGKQLANLLKAYEEKRYEDAVYKHALVYLVLKQPDKAETCLQPAIKLAREHCQKDAKDWHNTFNLALYCLAAQYTQQADYFYRYALLKGASSEFISEAIQYLNDFLTVLPNHIQATSIRQLLQSGLTKSYNFQPTPQKNHESQQQTPNQFLLS
>NZ_CP040094.1|WP_174713502.1|529503_529737_-|ribbon-helix-helix-protein,-CopG-family
MSNLSVQLPDSLYKSLQELAKQDGISIDQFVATAVAEKIAALTTEVYLGELAKRGSREKYDAVLAKVPDIETESYDR
>NZ_CP040094.1|WP_174708317.1|529839_530262_-|hypothetical-protein
MSHTPQWIYIVFLTFSTIVMIFLFRHDWNRLAKLYRTEEAPPQNFSRMQSGSVGLVHYKGTLNIGITPQGIYLSIFPLFSLGLTPLLIPWSAIRKIEPANQLFIERFRLYLSSPKVKLILSKDILEPAKEFLATQGFEWI
>NZ_CP040094.1|WP_174708318.1|530722_531379_-|(2Fe-2S)-ferredoxin-domain-containing-protein
MGASHTMEVSEFCLEGRFINFVIKDGYKLKGLMLGTHEGESYIKLAKHLRAAFDLRLPPGTWLQVVGYKKHDLKDGTVTLKAERVMAARSDMGRVETIAPVQEPPSIDNVKVKPAKAKATILVCQKSDCMKRGGKAVCQALEAALSDRGLEDQVTIKGTGCMKNCKAGPNLVMPDKTRHSRIQAAQIPALMNQHFGDKSLEAQPENLREVVISNGKLC
>NZ_CP040094.1|WP_174708319.1|531437_531701_-|hypothetical-protein
MKSFSSEIESNHLVEVNWADRWQVYQRLKELDIPCTCTANQPLKVEIGSPVTAVQIWSVIWQLTASRQEQILTLECCWKIANNSSNF
>NZ_CP040094.1|WP_163934571.1|532176_532731_+|DNA-starvation/stationary-phase-protection-protein
MSETQTLLRNFGNVYDNPVLLDHSVTAPVTEGFNVVLASFQALYLQYQKHHFVVEGSEFYSLHEFFNESYNQVQDHIHEIGERLDGLGGVPVATFSKLAELTCFEQESEGVYSSRQMVENDLAAEQAILGVIRRQAAQAESLGDRGTRYLYEKILLKTEERAYHLSHFLAKDSLTLGFVQAAQS
>NZ_CP040094.1|WP_174708320.1|533260_536524_+|carbamoyl-phosphate-synthase-large-subunit
MPRRDDLRKILLLGSGPIVIGQACEFDYSGTQACKALREEGYEVVLVNSNPATIMTDPETADRTYIEPLTPELVEKVIEKERPDALLPTMGGQTALNLAVALAKNGVLEKYGVELIGAKLPAIEKAEDRKLFGEAMARIGVAVCPSDTAESLEEAKAVARQIGSYPLIIRPAFTMGGSGGGIAYNQEEFEEMAQVGIDASPVSQILIDQSLLGWKEYELEVMRDLADNVVIICSIENLDPMGIHTGDSITVAPAQTLTDKEYQRLRDMAIKIIREIGVETGGSNIQFAVNPLNGDVVVIEMNPRVSRSSALSSKATGFPIAKMAAKLAVGYTLDEIKNDITKKTPASFEPTIDYVVTKIPRFAFEKFPGSDPVLTTQMKSVGEAMAIGRTFNESFQKALRSLETGRAGWGCDKAEKLPSGEQIRAQLRTPNPDRIFAVRHALQQGMTIEEIYELTGIDRWFLDKLQQLLDVEKFLKRTPLQQLTKEQLYEVKRDGYSDRQIAYATKTTEDEVRAYRKSLGIIPVYKTVDTCAAEFEALTPYYYSTYEEETEVMPATKPKVLILGGGPNRIGQGIEFDYCCCHAAYALKDAGYETIMVNSNPETVSTDYDTSDRLYFEPLTKEDVLNIIETENPVGVIIQFGGQTPLKLAIPLQEFLNNDTSGLLTKIWGTSPDSIDMAENRERFEKILQQLNIAQPPNGIARSYEDALIVAKRIGYPVVVRPSYVLGGRAMEIVYSDTELERYMSFAVLIEPEHPILIDKFLENAIEVDVDAIADHTGQVVIGGIMEHIEQAGIHSGDSACSLPSISLSPAVLNQIRTWTVQLAQALSVVGLMNIQFAVVGASSYSPQVYILEANPRASRTVPFVSKATGVQLAKLASLIMSGKTLEELGFTEEVIPTHIAVKEAVLPFNKFPGTDTILGPEMRSTGEVMGIDSDFGRAFAKAELGAGERLPLTGTVFVSMSDRDKAAAGAVVKEFIDLGFTVMATLGTRRVLLEQGLNIELVLKLHEGRPHVLDAIKNKKIQLIINTPSGEEAQTDARLIRRTALAYKIPIITTIAGAKATVAAIRSLQNTTLDVKTIQEYCPITR
>NZ_CP040094.1|WP_114081492.1|537103_538060_+|RNA-polymerase-sigma-factor,-RpoD/SigA-family
MKTAQTATDLVRTYLREIGRVPLLTHEEEIFYGKQVQRSCTLHESRESLATQLGRQPTLEEWAKATKLEPAELNEAIADGEIAKRKMVEANLRLVVSVAKKYIKRNVDLLDLIQEGSIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKAQRQLSQKLGRAPTAGELAQELELTPKQVREYLEKARLPLSLDLRLGDNYDTELGEMLEDPGASPEEFVMQSSLSYDLDRLMGDLTPQQREVITLRFGLTDGQALTLAKIGEILNISRERVRQIEREALTKLRKSKANMGEYLAS
>NZ_CP040094.1|WP_174708321.1|538319_538664_+|DUF760-domain-containing-protein
MSNPSNRVSEFFNSESETNDLLWQYVKSLSPETVTQLSKPTSAEVFQVMERNITGLLGNLPSEHFGITVSTSRESLGRLLASAMISGYFLRNAEQRMNFELALQGTETNTTEVD
>NZ_CP040094.1|WP_174708322.1|538912_539365_+|8-oxo-dGTP-diphosphatase-MutT
MSETSSFPPHKIIGVAVIWNDQKQILIDRRRPEGAMGGLWEFPGGKIEPGETIQECIQREISEELGIVIEVGEHLITIDHTYTNLRVTLTVHHCCHVTGVPQPLESDEIRWVTLEELEQFTFPKANTQIIAALKRELEIGHGALGIGHGE

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Crispr_ID: NZ_CP040094_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040094_2

749091-749341

Orphan

Consensus_repeat	Method
CCCTACCGATTGGGTTAAATCGGAATTAATGGAAA	PILER-CR
CCCTACCGATTGGGTTAAATCGGAATTAATGGAAAC	CRISPRCasFinder
CCCTACCGATTGGGTTAAATCGGAATTAATGGAAAC	CRT

3 spacers

The CRISPR arrays of NZ_CP040094_2

>merge|NZ_CP040094|2|749091-749341|PILER-CR,CRISPRCasFinder,CRT
CCCTACCGATTGGGTTAAATCGGAATTAATGGAAACGAATTGGGAGTCGCCAAACGCTTTTGCACTACCACCCTACCGATTGGGTTAAATCGGAATTAATGGAAACCCTATGAACTCCACGTCCATTTCTACTAACCCCTGTACCCTACCGATTGGGTTAAATCGGAATTAATGGAAACTTGGATTGAGAAAGCCCAAGGTTTAGCTGATTATTGCCCTACCGATTGGGTTAAATCGGAATTAATGGATAA

>NZ_CP040094|2|1|749091-749340|PILER-CR
CCCTACCGATTGGGTTAAATCGGAATTAATGGAAA	CGAATTGGGAGTCGCCAAACGCTTTTGCACTACCA
CCCTACCGATTGGGTTAAATCGGAATTAATGGAAA	CCCTATGAACTCCACGTCCATTTCTACTAACCCCTGTA
CCCTACCGATTGGGTTAAATCGGAATTAATGGAAA	CTTGGATTGAGAAAGCCCAAGGTTTAGCTGATTATTG
CCCTACCGATTGGGTTAAATCGGAATTAATGGATA

>NZ_CP040094|2|2|749091-749341|CRISPRCasFinder
CCCTACCGATTGGGTTAAATCGGAATTAATGGAAAC	GAATTGGGAGTCGCCAAACGCTTTTGCACTACCA
CCCTACCGATTGGGTTAAATCGGAATTAATGGAAAC	CCTATGAACTCCACGTCCATTTCTACTAACCCCTGTA
CCCTACCGATTGGGTTAAATCGGAATTAATGGAAAC	TTGGATTGAGAAAGCCCAAGGTTTAGCTGATTATTG
CCCTACCGATTGGGTTAAATCGGAATTAATGGATAA

>NZ_CP040094|2|1|749091-749341|CRT
CCCTACCGATTGGGTTAAATCGGAATTAATGGAAAC	GAATTGGGAGTCGCCAAACGCTTTTGCACTACCA
CCCTACCGATTGGGTTAAATCGGAATTAATGGAAAC	CCTATGAACTCCACGTCCATTTCTACTAACCCCTGTA
CCCTACCGATTGGGTTAAATCGGAATTAATGGAAAC	TTGGATTGAGAAAGCCCAAGGTTTAGCTGATTATTG
CCCTACCGATTGGGTTAAATCGGAATTAATGGATAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040094.1\|WP_012411737.1\|758244_758697_+\|DUF3531-family-protein	unknown	unknown	gnl\|CDD\|371866
NZ_CP040094.1\|WP_174708470.1\|743288_744470_-\|catalase	unknown	unknown	gnl\|CDD\|163708
NZ_CP040094.1\|WP_174708480.1\|757146_758106_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP040094.1\|WP_174708471.1\|744559_746188_-\|heme-peroxidase	unknown	unknown	gnl\|CDD\|188648
NZ_CP040094.1\|WP_174708464.1\|736776_737940_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174708479.1\|756131_756806_-\|energy-coupling-factor-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224047
NZ_CP040094.1\|WP_174708466.1\|739203_739347_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174708476.1\|752781_753048_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174708469.1\|741141_743049_+\|1-deoxy-D-xylulose-5-phosphate-synthase	unknown	unknown	gnl\|CDD\|235470
NZ_CP040094.1\|WP_174708472.1\|746271_747279_-\|DUF2235-domain-containing-protein	unknown	unknown	gnl\|CDD\|370774
NZ_CP040094.1\|WP_174708467.1\|739499_739871_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174708477.1\|753099_754242_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226359
NZ_CP040094.1\|WP_174708473.1\|747812_748874_+\|S-methyl-5-thioribose-1-phosphate-isomerase	unknown	unknown	gnl\|CDD\|235578
NZ_CP040094.1\|WP_174708474.1\|750052_751474_-\|NADP-dependent-isocitrate-dehydrogenase	unknown	unknown	gnl\|CDD\|180944
NZ_CP040094.1\|WP_174708468.1\|740136_740583_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174708465.1\|738224_739187_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381326
NZ_CP040094.1\|WP_174708475.1\|751862_752591_+\|GUN4-domain-containing-protein	unknown	unknown	gnl\|CDD\|368432
NZ_CP040094.1\|WP_174708481.1\|758705_759137_+\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|240044
NZ_CP040094.1\|WP_174708478.1\|755226_755961_-\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	unknown	unknown	gnl\|CDD\|223434
NZ_CP040094.1\|WP_174713509.1\|754517_755132_+\|superoxide-dismutase	unknown	unknown	gnl\|CDD\|223678

Protein	Function_ID	Function_description	E-value
NZ_CP040094.1\|WP_012411737.1\|758244_758697_+\|DUF3531-family-protein	gnl\|CDD\|371866	pfam12049, DUF3531, Protein of unknown function (DUF3531). This family of proteins is functionally uncharacterized. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 149 to 199 amino acids in length.	2.50025e-94
NZ_CP040094.1\|WP_174708470.1\|743288_744470_-\|catalase	gnl\|CDD\|163708	cd08152, y4iL_like, Catalase-like heme-binding proteins similar to the uncharacterized y4iL. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes involved in the protection of cells from the toxic effects of peroxides. It catalyses the conversion of hydrogen peroxide to water and molecular oxygen. Several other related protein families share the catalase fold and bind to heme, but do not necessarily have catalase activity. This family contains uncharacterized proteins similar to Rhizobium sp. NGR234 y4iL, of mostly bacterial origin.	7.79507e-78
NZ_CP040094.1\|WP_174708480.1\|757146_758106_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	2.42292e-07
NZ_CP040094.1\|WP_174708471.1\|744559_746188_-\|heme-peroxidase	gnl\|CDD\|188648	cd09816, prostaglandin_endoperoxide_synthase, Animal prostaglandin endoperoxide synthase and related bacterial proteins. Animal prostaglandin endoperoxide synthases, including prostaglandin H2 synthase and a set of similar bacterial proteins which may function as cyclooxygenases. Prostaglandin H2 synthase catalyzes the synthesis of prostaglandin H2 from arachidonic acid. In two reaction steps, arachidonic acid is converted to Prostaglandin G2, a peroxide (cyclooxygenase activity) and subsequently converted to the end product via the enzyme's peroxidase activity. Prostaglandin H2 synthase is the target of aspirin and other non-steroid anti-inflammatory drugs such as ibuprofen, which block the substrate's access to the active site and may acetylate a conserved serine residue. In humans and other mammals, prostaglandin H2 synthase (PGHS), also called cyclooxygenase (COX) is present as at least two isozymes, PGHS-1 (or COX-1) and PGHS-2 (or COX-2), respectively. PGHS-1 is expressed constitutively in most mammalian cells, while the expression of PGHS-2 is induced via inflammation response in endothelial cells, activated macrophages, and others. COX-3 is a splice variant of COX-1.	0
NZ_CP040094.1\|WP_174708479.1\|756131_756806_-\|energy-coupling-factor-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224047	COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism].	3.76596e-67
NZ_CP040094.1\|WP_174708469.1\|741141_743049_+\|1-deoxy-D-xylulose-5-phosphate-synthase	gnl\|CDD\|235470	PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional.	0
NZ_CP040094.1\|WP_174708472.1\|746271_747279_-\|DUF2235-domain-containing-protein	gnl\|CDD\|370774	pfam09994, DUF2235, Uncharacterized alpha/beta hydrolase domain (DUF2235). This domain, found in various hypothetical bacterial proteins, has no known function.	7.08157e-115
NZ_CP040094.1\|WP_174708477.1\|753099_754242_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226359	COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism].	4.12668e-164
NZ_CP040094.1\|WP_174708473.1\|747812_748874_+\|S-methyl-5-thioribose-1-phosphate-isomerase	gnl\|CDD\|235578	PRK05720, mtnA, methylthioribose-1-phosphate isomerase; Reviewed.	0
NZ_CP040094.1\|WP_174708474.1\|750052_751474_-\|NADP-dependent-isocitrate-dehydrogenase	gnl\|CDD\|180944	PRK07362, PRK07362, NADP-dependent isocitrate dehydrogenase.	0
NZ_CP040094.1\|WP_174708481.1\|758705_759137_+\|NUDIX-hydrolase	gnl\|CDD\|240044	cd04688, Nudix_Hydrolase_29, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	2.00699e-36
NZ_CP040094.1\|WP_174708465.1\|738224_739187_+\|aldo/keto-reductase	gnl\|CDD\|381326	cd19100, AKR_unchar, uncharacterized aldo-keto reductase (AKR) superfamily protein. This family includes a group of uncharacterized AKR superfamily proteins. Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance in both health and industrial applications.	4.54545e-101
NZ_CP040094.1\|WP_174708475.1\|751862_752591_+\|GUN4-domain-containing-protein	gnl\|CDD\|368432	pfam05419, GUN4, GUN4-like. In Arabidopsis, GUN4 is required for the functioning of the plastid mediated repression of nuclear transcription that is involved in controlling the levels of magnesium- protoporphyrin IX. GUN4 binds the product and substrate of Mg-chelatase, an enzyme that produces Mg-Proto, and activates Mg-chelatase. GUN4 is thought to participates in plastid-to-nucleus signaling by regulating magnesium-protoporphyrin IX synthesis or trafficking.	1.71236e-91
NZ_CP040094.1\|WP_174708478.1\|755226_755961_-\|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG	gnl\|CDD\|223434	COG0357, GidB, Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane].	5.92538e-77
NZ_CP040094.1\|WP_174713509.1\|754517_755132_+\|superoxide-dismutase	gnl\|CDD\|223678	COG0605, SodA, Superoxide dismutase [Inorganic ion transport and metabolism].	2.33994e-110

>NZ_CP040094.1|WP_174708473.1|747812_748874_+|S-methyl-5-thioribose-1-phosphate-isomerase
MTLSTNHVYPVIWHNESVSLIDQTRLPNEYTFVEIHRSEDMARAIKTMIVRGAPAIGVAAAYGMYLGAREIETSDRTEFLQNLDKVAQLLRSTRPTAVNLFWAISRMLKVAYETLGTVEEIKQTLFQTAQAINAEDLQTCQAIGDNGLAVLPTTPEKLTLLTHCNAGALATAGYGTALGVVRSAWREGRLERLFADETRPRLQGAKLTTWECVQEGIPVTLITDNMAAHCMKQGLIHAVVVGADRIAANGDTANKIGTYSVAIAAKAHNIPFFVAAPLSTVDFELADGSKIPIEERDPTEIYQVGDTILTPEGVDFYNPAFDVTPAELITAIITENGAIAPHELAKSQVKQLV
>NZ_CP040094.1|WP_174708472.1|746271_747279_-|DUF2235-domain-containing-protein
MKRLVICCDGTWQQLTSAYPSNVVKLAQSVKPMASDGVAQIVFYDEGVGAEGQKVLGGATGLGIDRNIEDGYRFLSLNYVPGDEIYLFGFSRGAYTVRSLAGMIYCSGLLDRPHVTKAHEAYELYRKRGVKPKDQEAVEYRQAYGDRVPITLLGCFDTVGALGIPGIPAFSKLSEQLNKRYRFHDTTLNKCVQNALHAVAIDEIREVFDVTPMTKHPDAENQRVIQKWFPGGHGCVGGGTEEHSGLSDAALQWMIDSIGEMQLGLDFDTSVIPTGINPNYECNFKNDAGFFKLAGIKFREVSDVIEDLHESTINRLKNRKDYRPKNLQKIISKLK
>NZ_CP040094.1|WP_174708471.1|744559_746188_-|heme-peroxidase
MTGKRDTSKDGLDNKIQTYVLTHFKPIWQLLQSNKSIARKVNKTLLNSLIYKIPTRPNPYSMMTLDEHIPDTKIPKKTDTYTSWESLNDRTYTGRHLPPDPKLNAEGNLPKVEDLAILFRKRDGKTIYSGKSTMLFPYWVQWFTDSFLRLNHYNKLKNTSNHEIDLCNVYGLTRKQTHLLRSFQGGKLKTQKLKRQDGVEEEYPLFYYADPALDKIKPEFEGLYEPLNDEKRQSVDKKQYMFAMGVERANVQIGYVMLNTLCLREHNRLCDELASNYPDWDDERLFQTSRNILMAMILKIIMEEYINHITPYHFKLFADPEAFTKESWHRPNYMAIEFDFVYRWHSAIPETFNYNGKPTHIAASLWNNKMFIDQGLGALMEETCSQPGTKIGLFNTPDILVELTELPSIRLGRQLQLASYNDYRELCGFPRVTRFEQVTGNEFAQQKLKELYGHVDKIEFFVGLYAEDGRENSTIPALVARLIGIDAFSQALTNPLLSPNIFNKETFSPVGWEILQNTNTVSDLVNRNVPPSGKKYKVTFDL
>NZ_CP040094.1|WP_174708470.1|743288_744470_-|catalase
MKLFTEYPEKDELKYCDLMSELVKKNMENLYGGEKKKTAKRDTHSKTHAAVQGTLEIFDFDEAAIKQELSKRTSLSEAELSAISLKQGLFATPKQYPVWLRFANGAFSVKNDYEGDTRSMAVKVIGVEGERLSQSHELKTQDIITHNTEFFFVRTIKDFHSFFLTVYRAGLFPLFKLLVLFWLKLHPYESTLLQTSFKRFPKSLLKERYWSASAFSVGLKSDFDPSQPGRVPVEYPAVIKYGFTPVSTQPPHQQLPLESRSESELRKAKSSGSEDNYYRDDIIQALEKPDAEYYWDFQIQFQTSPEMSIDDTTIVWNEEESPFFTVGRLTIKHQKVNSPQENDFGENLSFSPGNGLAVHRPVGAINRLRSIVYPIVANDRHQKRGVKYQEPTV
>NZ_CP040094.1|WP_174708469.1|741141_743049_+|1-deoxy-D-xylulose-5-phosphate-synthase
MHLSEITHPNQLHGLSVRQLQQIARQIRDKHLQTVAVNGGHLGPGLGVVELTLGLYQTLDLDRDKVIWDVGHQAYPHKLLTGRYDRFHTLRQKDGVAGYLKLCENKFDHFGAGHASTSISAALGMALARDLKGEKFKAVAVIGDGALTGGMALEAINHAGHMPKTNLLVVLNDNDMSISRNVGAIPRYLNKMRLSQPVQFIKDNLEEQFKQIPFVGESLSPELARIKEGMKRLAVPKVGAVFEELGFTYIGPVDGHNLEELIATFQQAHQIQGPVLVHVATIKGKGYEIAELDQVGYHAQSPFNVATGKAIPSNKPKPPAYAKVFSHTLVKLAEQNPKIVGITAAMATGTGLDKLQAKLPNQYVDVGIAEQHATTLAAGLATQGMRPVAAIYSTFLQRAYDQIIHDVCIQNLPVFFCLDRAGIVGSDGPTHQGMYDIAYLRCIPNIAIMAPKDEAELQRMVVTGVEHTSGPIAMRYPRGNGYGVPLMEEGWEPLEIGKGEILRTGDDVLIVAYGTMVYPGMQAAEILSEHGIEATVINARFVKPLDTELILPLAKKIGRVITLEEGCVMGGFGSAIAEALMDADILVPVKRFGVPDVLVDHAEPNESKTELGLTSHQIAERVLKAFFKQQVSAVV
>NZ_CP040094.1|WP_174708468.1|740136_740583_+|hypothetical-protein
MKSNYFTKQLSTVKRWMATALFCMLAIAFVWQGAFFSNTSAMAEPSATLIASKDAGDQVQEKASKDAGRAKNFIQDTADKVKQAAKSNANKVDQATDSGSFAERKAKRDAATIQKRADEDAARTQKAVDNTKNAVERTVDNIKDAFGK
>NZ_CP040094.1|WP_174708467.1|739499_739871_+|hypothetical-protein
MPVQDKTRRLPSQSISQDITSLHGLQTITTYNTTRADASVVNLQQAYQTMLAQQQAETEKLALYRAAADAARLAEWEFHNAVLAMKEVVRGQYGSDSDQAQAIGLKKKSERKRPNRKKSVAMA
>NZ_CP040094.1|WP_174708466.1|739203_739347_-|hypothetical-protein
MALLTKTMALSAETIALLVEPIALSAETIALLLEIMALSVETIALQQ
>NZ_CP040094.1|WP_174708465.1|738224_739187_+|aldo/keto-reductase
MSGTTPNSEMSYRVLGSTGERVSAIGLGGWHIALKHVDEQLAIRIVRTAIDRGITFMDNSWDYNDGVSEIRMGKALRDRYRDKVFLMTKIDGRSKKEAARQLDESLKRLQVDCIDLVQHHEILRHEDPHRVFDEEGANAAFLEAKQAGKLRYIGFTGHKDPSVHLHMLEVAASNGFKFDTVQMPLNVMDAHYRSFAKLVVPELVKQNIGVLGMKSLANGILLRSKTVTPIECLHYALNLPTSVVITGIDSMEILEQAFEAVRTFQPMNDEQVRSLLAKTAQAASRGEFEPFKTSSIFDSTAQNPDWLGEEPQRIQQLMSA
>NZ_CP040094.1|WP_174708464.1|736776_737940_+|hypothetical-protein
MMAKVGYSVFQRVTTARLLRKICLLALTVPFLASSAIGLATANERKYEYEYEGENETYAIGLWGDLPYSDLQATTGVPNLIADMNAQDLAFTVHDGDLKGGNSTPGSVTPTTCSNELYAQALGFFNSLKAPAAFTPGDNDWTDCDRPSNGGFNSLNRLDYERQVFFSTKFSLGQRRLVQEVQTTPLCLGATGAVPCVENRRWTVGRVTYATLNIQGSCNNLCDTAPNPDEYTARNAADIAWMRETFQVAKTRNSAAVMFISQADPGWDLTDGTRAPLRDPKTLTETDGQPDSFKDFLLAFRDEVIAFRKPIAYVYGDSHYYRVDKPFLDAQGRRIENFTRVETFGDNAANGTNDVNWVKVTVNPRSREVFSYQPQIVPGNRVAVPSP
>NZ_CP040094.1|WP_174708474.1|750052_751474_-|NADP-dependent-isocitrate-dehydrogenase
MYEKITPPAAGAKITFKNGEPIVPDNPIIPFIRGDGTGIDIWPATQKVLDAAVAKAYKGQRQISWFKVYAGDEACDLYGTYQYLPQDTLTAIEEYGVAIKGPLTTPIGGGIRSLNVALRQIFDLYACVRPCRYYAGTPSPHKNPEKLDVIVYRENTEDIYLGIEWRQGSEIGDRLIKILNEELIPATPEHGKKRIPLDSGIGIKPISKTGSQRLVRRAIKHALLLPKNKQQVTLVHKGNIMKYTEGAFRDWGYELATSEFRQETVTEQESWILSNKEKNPNISLEENARQIEPGFDNLTPDKKAQVVKEVETVLNTIWATHGDGKWKEKVLVNDRIADSIFQQIQTRPDEYSILATMNLNGDYLSDAAAAIVGGLGMGPGANIGDSSAIFEATHGTAPKHAGLDRINPGSVILSGVMMLEFLGWQEAADLVKKGLSDAIANSQVTYDLARLLEPPVEPLKCSEFADAIIQHFG
>NZ_CP040094.1|WP_174708475.1|751862_752591_+|GUN4-domain-containing-protein
MTDPMILSGPANDIDSLRQPLIAGSEKVQQQTIPQLAELGNEGLDVLMEFLLKRRENPATWIDGKAYQVLYNSDAPQAKEFLRSCFPEGIVPLKSECGINYNSLQQLLAAQDFQAADRVTIEKMCELSGPTAVQRKWLYFTEVENTPAVDLQTINNLWLVHSEGKFGFSVQREIWLSLGKNWENFWPKIGWKEGNNWTRYPNSFTWDLSAPRGHLPLSNQLRGVRVFASLLSHPAWTKNSEK
>NZ_CP040094.1|WP_174708476.1|752781_753048_+|hypothetical-protein
MCEKSKISCCRLRSEYDLKSLRVRKFGPERKSFEKTTIHLEPDVAEVFPNADAVNEALRFLIRVVQDNQVSALTKQSQNSSDWAHKSP
>NZ_CP040094.1|WP_174708477.1|753099_754242_+|ABC-transporter-ATP-binding-protein
MANVRLEDIKRRFNNVTAIEDITFEIPDGEFWVLVGPSGCGKSTILRTIAGLETATSGKLFIGDRLVNNIPARQRDVAMVFQNYALYPHMSVAENIGFGLQMRKVDRKIIQERVMNVARSLSLDHLLDRKPKQLSGGQQQRVALGRAIAREPQVFLLDEPLSNLDAQLRDDTRAELKQLHQELGITTIYVTHDQVEAMTLADKIVVLNRGRIQQIGDPQTIYASPANQMVASFLGSPPMNILPAIYQNNGFDVSGQLLTIPAVVKEKLQLRQGHSYDLGIRPEHIFINVDASLRDATRTACRTLPPNRQEENESHLIVEVKLVEPLGRETLIRAGLPGSAVVLNIQVGGDVRPRPGDRLSLQLDLNHLFVFDPKTGDRIL
>NZ_CP040094.1|WP_174713509.1|754517_755132_+|superoxide-dismutase
MQLPPLPYAYEALEPHIDAKTMQFHHDKHHATYVKNLNAALDKHPELKGKTIEELLQKLDSVPQDIRKIVRNNGGGHVNHSMFWEIMKPKGGGEPTGNIASAINQSFGSFAAFKKQFNEAGASRFGSGWVWLVRNKGGKLEVTTTANQDSPLSAGKYPILGNDVWEHAYYLNYQNRRADYLDAWWNVVNWDEINKRFAAASKLA
>NZ_CP040094.1|WP_174708478.1|755226_755961_-|16S-rRNA-(guanine(527)-N(7))-methyltransferase-RsmG
MTNLLPEMAEIWQQTLNWQPTVQQQEQFQRLYELILEGNRQLNLTRITDPQEFWEKHLWDSLRGILPLLSGNLPPASPTIIDIGTGAGFPGVPVAMTVTNCTITLLDSTQKKITFLDNLLSELALTNAKTLVGRAEEIGQHPQHRKAYDIALIRAVGAVSVCAEYTLPLLKQGGLAIIYRGNWTKDETTALQNAVKLLGGVIESIEQFTTPLSHSIRHCVYLRKVATTPVQFPRPIGVPTQKPL
>NZ_CP040094.1|WP_174708479.1|756131_756806_-|energy-coupling-factor-ABC-transporter-ATP-binding-protein
MLYLRNVNYHPTACPTAILKSINLELAPQQLGLIIGPSGSGKSTLLEILSGLAEPTTGALFWREQELIAEQLQQLAGLVFQFPERHFCGGSILEELRLGHPELGSERVRQTLTEVGLEHLSLSAAPHALSGGQQRRLALAVQLIRQPNLLLLDEPTAGLDWSMRRQLVNLLAKLKQDWTLLIVTHDAGDLLAIADRCWTLNHGELQSVDPKTLESKVKEPLPSV
>NZ_CP040094.1|WP_174708480.1|757146_758106_+|tetratricopeptide-repeat-protein
MNKRFSSPLLVVPTRLTILAQTAFGAAFAFGVAPWAIALNLWINPSLAGDPFRNSEPHQIGDQTEAAFKAMFQQGNYPAAERYLEQAISKEPNEPLAYAMKASLAYGNQDWVKLDTYSKKTLETGQKLIPNDPLRGNLYTAVGHFLEGAVIITRQGTVNGVPQAFSRLRQVYEYLDKAEAISANDPELNLIKGYMDLLLAVNLPFASPDQSIGRLEKNAAPGYLVDRGIALAYRDLKRYPQALEYVNRAIKTTSDNPEIYYLKAQILKELGQKEKSQQMIREAIANFDKALTKKSQLPGDLVKQIERERKNAASLSDAG
>NZ_CP040094.1|WP_012411737.1|758244_758697_+|DUF3531-family-protein
MEIQFREINPFDMWIWLKFSTNPSAREKQYVEEVFNSWFYLGKLGAFNAENLQVQDTGLDISYMNYDEQGYDKSLLALMHNIGEFEYEGQWGRCWFDLGTSDAIALDILINALTQLSQEYVTIEQLYIGGENPDWPIEDSESRPQSIYDN
>NZ_CP040094.1|WP_174708481.1|758705_759137_+|NUDIX-hydrolase
MNKAGEIRVIALGLIRDGERIFVSEGYDPVKQETFYRALGGGVDFGETSHAALKREFQEEIQAELTSIKYLGCIENLFTFNGRQGHEIIQLYQCDFVDSKFYQLESLIFSESQHHKHKALWIDISRFKSDELRLVPKVFFEYL

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Crispr_ID: NZ_CP040094_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040094_3

962056-962170

Orphan

Consensus_repeat	Method
AAAGCGGCCAAGCAACTGCTCAAATTCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040094_3

>merge|NZ_CP040094|3|962056-962170|CRISPRCasFinder
AAAGCGGCCAAGCAACTGCTCAAATTCTCAAGAATGTCGGCTACACGGCATCTGAGGTGGGACAAGTACTCTCTAATGTCTTCCGCCAAAGCGACCAAGCAACTGCTCAAATTCT

>NZ_CP040094|3|3|962056-962170|CRISPRCasFinder
AAAGCGGCCAAGCAACTGCTCAAATTCT	CAAGAATGTCGGCTACACGGCATCTGAGGTGGGACAAGTACTCTCTAATGTCTTCCGCC
AAAGCGACCAAGCAACTGCTCAAATTCT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040094.1\|WP_174708618.1\|965989_967285_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270451
NZ_CP040094.1\|WP_174708622.1\|970370_970631_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273332
NZ_CP040094.1\|WP_174708621.1\|969909_970176_+\|transposase	unknown	unknown	gnl\|CDD\|290319
NZ_CP040094.1\|WP_174708619.1\|967595_969167_-\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|277347
NZ_CP040094.1\|WP_174708608.1\|947447_949643_-\|transglycosylase-SLT-domain-containing-protein	unknown	unknown	gnl\|CDD\|381604
NZ_CP040094.1\|WP_174708613.1\|955852_956629_+\|AIM24-family-protein	unknown	unknown	gnl\|CDD\|376704
NZ_CP040094.1\|WP_174708235.1\|953704_954771_-\|ISKra4-family-transposase	unknown	unknown	unknown
NZ_CP040094.1\|WP_174708610.1\|953561_953732_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174708617.1\|965037_965796_-\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|234640
NZ_CP040094.1\|WP_174708616.1\|964628_964820_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174708615.1\|963182_964442_-\|FAD-dependent-hydroxylase	unknown	unknown	gnl\|CDD\|236001
NZ_CP040094.1\|WP_174708623.1\|970664_971102_+\|nitrogen-fixation-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174708612.1\|955211_955709_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174708609.1\|953136_953376_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174708607.1\|946921_947293_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174708624.1\|971446_971764_+\|Nif11-like-leader-peptide-family-natural-product-precursor	unknown	unknown	gnl\|CDD\|369562
NZ_CP040094.1\|WP_174708611.1\|954907_955159_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_163934112.1\|946637_946811_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174708606.1\|945716_946001_-\|DUF427-domain-containing-protein	unknown	unknown	gnl\|CDD\|377265
NZ_CP040094.1\|WP_174708620.1\|969379_969775_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP040094.1\|WP_174708618.1\|965989_967285_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270451	cd14748, PBP2_UgpB, The periplasmic-binding component of ABC transport system specific for sn-glycerol-3-phosphate; possesses type 2 periplasmic binding fold. This group includes the periplasmic component of an ABC transport system specific for sn-glycerol-3-phosphate (G3P) and closely related proteins from archaea and bacteria. Under phophate starvation conditions, Escherichia coli can utilize G3P as phosphate source when exclusively imported by an ATP-binding cassette (ABC) transporter composed of the periplasmic binding protein, UgpB, the transmembrane subunits, UgpA and UgpE, and a homodimer of the nucleotide binding subunit, UgpC. Members of this group belong to the type 2 periplasmic-binding fold superfamily. PBP2 proteins are comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. The majority of PBP2 proteins function in the uptake of small soluble substrates in eubacteria and archaea. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	1.73032e-100
NZ_CP040094.1\|WP_174708621.1\|969909_970176_+\|transposase	gnl\|CDD\|290319	pfam13586, DDE_Tnp_1_2, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis.	0.000221967
NZ_CP040094.1\|WP_174708615.1\|963182_964442_-\|FAD-dependent-hydroxylase	gnl\|CDD\|236001	PRK07364, PRK07364, FAD-dependent hydroxylase.	0
NZ_CP040094.1\|WP_174708608.1\|947447_949643_-\|transglycosylase-SLT-domain-containing-protein	gnl\|CDD\|381604	cd13401, Slt70-like, 70kDa soluble lytic transglycosylase (Slt70) and similar proteins. Catalytic domain of the 70kda soluble lytic transglycosylase (LT)-like proteins, which also have an N-terminal U-shaped U-domain and a linker L-domain. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue. Proteins similar to this family include the soluble and insoluble membrane-bound LTs in bacteria and the LTs in bacteriophage lambda.	1.00341e-63
NZ_CP040094.1\|WP_174708622.1\|970370_970631_+\|hypothetical-protein	gnl\|CDD\|273332	TIGR00911, High-affinity_methionine_permease, L-type amino acid transporter. [Transport and binding proteins, Amino acids, peptides and amines].	0.0074157
NZ_CP040094.1\|WP_174708619.1\|967595_969167_-\|metallophosphoesterase	gnl\|CDD\|277347	cd07402, MPP_GpdQ, Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	2.26945e-06
NZ_CP040094.1\|WP_174708624.1\|971446_971764_+\|Nif11-like-leader-peptide-family-natural-product-precursor	gnl\|CDD\|369562	pfam07862, Nif11, Nif11 domain. This domain is found mainly in the Cyanobacteria and in Proteobacteria such as the nitrogen-fixing bacterium Azotobacter vinelandii. It is found in Nif11, a protein described in Azotobacter as linked to nitrogen fixation. It also constitutes a leader peptide in Nif11-derived peptides (N11P), which are thought to be post-translationally modified microcins derived from a putative nitrogen-fixing protein. N11P sequences have a classic leader peptide cleavage motif, usually Gly-Gly, which marks the end of family-wide similarity area and the beginning of a low-complexity region rich in Cys, Gly and Ser.	3.1348e-10
NZ_CP040094.1\|WP_174708613.1\|955852_956629_+\|AIM24-family-protein	gnl\|CDD\|376704	pfam01987, AIM24, Mitochondrial biogenesis AIM24. In eukaryotes, this domain is involved in mitochondrial biogenesis. Its function in prokaryotes in unknown.	8.25635e-40
NZ_CP040094.1\|WP_174708606.1\|945716_946001_-\|DUF427-domain-containing-protein	gnl\|CDD\|377265	pfam04248, NTP_transf_9, Domain of unknown function (DUF427). This domain contains a beta-tent fold.	1.5767e-40
NZ_CP040094.1\|WP_174708617.1\|965037_965796_-\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|234640	PRK00110, PRK00110, YebC/PmpR family DNA-binding transcriptional regulator.	1.93021e-145

>NZ_CP040094.1|WP_174708613.1|955852_956629_+|AIM24-family-protein
MPDFSSEPIPELKNPKDFFHSGDLTLRIEGEVVPVVDVHLGQQQSIYFEHHILLWKHPNVRLGVKGLKGAAKRFFAGLQIFISEAHGPGNIAFSREAPGQIVVLQLERGQIVDVREHQFLLATSNIEYSFFFQRGLANLFFSRSGGLFIDRFIGQQQGGLLLIHGYGNVFEKYLAPGEVLDVEPGAWLWKDSSVKMETVTALQSSGGGIFGVIGVMLGGISFTLNRFIGPGRLGLQSMTYHPPAPEGATQIGGSSNLS
>NZ_CP040094.1|WP_174708612.1|955211_955709_+|hypothetical-protein
MIKIVFWNVILGFLAVLIAILVSGTIQAWAANPNLDGDSQPTRLKLNECIADVKEVTAWNDKETLDAARKICEIRQSHAKQKARFLASLKKLQEQYQNYTNHGFDKQLPTAIADSWTIVKSCIDFKEGFTSPHNVAVLSVPENVRSSCYSLGASLVESALFNQTQ
>NZ_CP040094.1|WP_174708611.1|954907_955159_+|hypothetical-protein
MSWSLLQQNRKEKALLLESEQKRLQLVLLELIEQNAGRITVLQLAKKAEISTQLAKQYLDEKAKELNANFEVNEEGNVLYHFS
>NZ_CP040094.1|WP_174708235.1|953704_954771_-|ISKra4-family-transposase
MTPEQKQALQKHIQAIAKILYEDTSKEKLTNLAAIEEAVRSQMQKHVMPEVGGFFIETITGTTAGYQRRLKSILGELAITSKQAIELEVAPSTQLSPYLETCCLRVSANVSYEDAASDIKYFTGIEVSHSSQQRLVHRQNFELPTPEQTIEELSVDGGNIRVRTPKGQICAWLGYKAISLHHLGILGTSFQNNQIVIDWVNDQPLASPLTCIGDGHDGIWNIIDQLAPDAQRREILDWFHLIENLHKVGGSQKRLKQAQNLLWKGQVEATIALFTDCKGKQVQNFCRYLDKHRNRIINYEYYQAEEICSIGSGSVESAVKQVDRRTKISGAQWKRENVPQVLAHRCAYLNGLLSV
>NZ_CP040094.1|WP_174708610.1|953561_953732_+|hypothetical-protein
MKLIKKVLAICFLLFGIPFSAVMILEIMNPKTPAQEKENGSISLFKVAQTDNNPLR
>NZ_CP040094.1|WP_174708609.1|953136_953376_+|hypothetical-protein
MKNFGGDGQSKRMVFLKSLQHKGIDEKIAGIINCQVNLDINTHLRWRNRFSGGDRSYRYYYTKYNKAIIFEFPPASSQL
>NZ_CP040094.1|WP_174708608.1|947447_949643_-|transglycosylase-SLT-domain-containing-protein
MLKKLQKKQISIIAGAALFAFLAGAMVSAPEIGKTVGQWLKLGKNQSEQTSDASIAQSAVFPLISQSLPERAAKLAEIAGQSRSPDRNRARYLLASDYIERTQAQKALALLQGLDKDYPILAPYILLKQAQAEDMLGEDGKASDLRQSVLKHYPKEAASVKALYLIAQPKQQEIAIAQFPSNPLTWEIIRKRLQENPNQPKLQLILATYAYDQPGIVGVLDQLVKQTTLKPEDWELIGTSYWENSQFLKAANAYAKAPKTSRNLYRTARGLQVGGKDKEIAIATYKQLVQQFPTTEEAGTALLRLAETAKTGKDGLPYLEQVISKFPKQAGTALVQKAKTLETLKDQKSASAAWQLLIAKYGNSDEAAEYRWKIAQDKAKAKDYVGAWQWAEPIVTNNPNSILAPRAGFWVGKWAASLGKQQESQTAYDYVISQFPYSYYAWRAANMRGLNVGNFDNVRVMNPEVIAPQRSLPPAGSETFKELYLLGQDRDAWLQWETEFQNKIQPTVAEQFTEGLMRQARGENLIGIDKISKLEDRETPAELAQYQTLSKQIVYWQARYPFPYLRETEKWSLERKLNPLLVTALMRQESRFEPKIKSVADATGLMQLLPSTAKWIAPQIKVDFKTINLENPNDNIMLGTWYLDHTHQQYNNNSLLAIASYNAGPGNVSKWLQTLTTQDPDEFVEQIPFDETKNYVRQVFGNYWNYLRLYNPEISGIVGKYSTTHPKLPAQ
>NZ_CP040094.1|WP_174708607.1|946921_947293_+|hypothetical-protein
MKLTNLINSALIVACIAFVPGIVDAQTVNNSGRQINTDSQNASYLQPFNIAFLAYQGAFREQGIPSAGTLLSEFQIGNLTAKDIVQAAIKTNKLPAQVLNDRGYVNAVESQVTSMINGNDIGS
>NZ_CP040094.1|WP_163934112.1|946637_946811_+|hypothetical-protein
MPKITSVHTADNQKSGASMNTFVNYDVLSSYPKNVNSLKSFDTAFIAYQMMGLSNFD
>NZ_CP040094.1|WP_174708606.1|945716_946001_-|DUF427-domain-containing-protein
MPKAIWNGTVLAESDRTIVVENNHYFPADSINKEYFTDSNTHTTCPWKGVASYYSIEVDGQINKDAAWYYPSTKEKAKNIEGYVAFWKGVKVEA
>NZ_CP040094.1|WP_174708615.1|963182_964442_-|FAD-dependent-hydroxylase
MALTQLEQPLSPQPTPPDLRGYEYDLVIVGGGIIGLTLASALKDSGLSILLIEAKVASAAVAKGQAYAVHQLSALIYQGIGVWDRMLPQIAKYCRVRLSDADYPNVVEFTTDDIHTAELGYVAEHQALLQPLQEFVQNCPNVTYLCPAEVVNTNYQQDIVEIDIKIADQLCTLRSKLLIAADGARSPIRQAAGIKTSGWKYWQSCIVAFVKPEKPHNNTAYERFWSSGPFAILPLPENRCRIVWTAPHEEAKALCALDDEQFLRELTRRYGDQMGKLELLGDRFVFQVQLMQSDRYVLPRLALIGDAAHNCHPVGGQGLNLGIRDAAALAQVLQTAHQAGKDIGDIQILKGYERWRKLENLTILGFTDLLDRMFSNNFLPVVMVRRLGLWFLQRVPFLKVFMLKLMIGLKGRTPELAKR
>NZ_CP040094.1|WP_174708616.1|964628_964820_-|hypothetical-protein
MNKFAKVLVLALIFAAPVTVFASQAQAKTIHHVASTKENKTHKIKHHKHHKHHAKNLAPKTHK
>NZ_CP040094.1|WP_174708617.1|965037_965796_-|YebC/PmpR-family-DNA-binding-transcriptional-regulator
MAGHSKWANIKRQKAVVDAKKGKTFTQLSRAIIVAARSGVPDPALNFQLRTAIDKAKAASIPNDNIERAIAKGAGTFGGDNAIFEAIRYEGYGPCGVAILIEAFTDNRNRTAADLRVAFSKNGGNLGETGCVSWMFDQKGVCVVQSVIDEEQLLEASLEGGAESYEMAEDEMAEVFTDIGNLETLSQTLKNQGFKVTDAEFCWIPSNSVEVTDPDQARSLFKLIDTLEGLDDVQNVTSNFEIAEELMTFSFS
>NZ_CP040094.1|WP_174708618.1|965989_967285_+|ABC-transporter-substrate-binding-protein
MSNYLRRLLFVLFVGIIALVGCQSILPVIKENQVIHLTLWQGVNPPPNRDVLQKLVDKFNQSHPNIQVESLYIGQQDQQTPKILAAVVGNAPPDLLWYNPTIAGQLVELNALLPLDEMLEKSPIKAEIDPALYGSMKYNGKIWSVPFATNNVGIFYRPSLFKAAGITELPRTWQEFAQVAKKLTRDTNGDGRTDQYGMFLPLGKGEFTVFTWLPFMWSGGGELVSGDSQNAAAVNLQNNQGAIAALQFWRDLITEGSAILSGPERGYETDDLLSGKVAMQLNGPWTLGQFQETGVDFDVFPIPVGQKPATVIGGENLFFFKTTPKRQIAAFKFVEYALSEEFQTELALGTGYLPVNLKSRESPKYQDFVKKIPQVKVFLDQAKYGRSRPIFPGYNRISDSVGRAIESVLLGKSLPADSLKATQQRLDLIFK
>NZ_CP040094.1|WP_174708619.1|967595_969167_-|metallophosphoesterase
MKLISDPPIPVKIQKMKERVRWMHPSFVQRGIDQTRMVIDDRREDSPEFSFMVIGDSGTKSHSRHHPQRKVAELMLPHRDDCSFVLHTGDVIYVVGSQEYYSRSFIEPYREFIVGGDNPKSIPYDRMVFNMPFLPVPGNHDYYDVPLIYRLLTGTTSSLRRLFRYKDIEIGWHGSYQGNAYARAFMDYTQAIASPQELERHLDKHYTAKTDTGRCLRYEPGQFTRLPNRYYTFRYGGIDFFALDSNTFNTPSPLPATEEGEIYRRELQKRRQEIDREELQILGICDALNPDKPAEAEELDELSAKLDQINEIKIDIEKQLASHKMPAIDFEQLEWLRSRLIESWNTSEVRGRIIFFHHPPFVTEATKWNQAQTLAVRHRLRWVFEQVAENLGSLIKERPIVDLILNGHAHCLEHLRTTDTGFADSHINCIISGGSGHRPRYQRRKGTELMETFTDIAGKPTRKVADSTLFVGRHDDNFQNRLPYSCVRIDVLDGSPPKFIIRPLVTERIEDEWYNRELEPFVI
>NZ_CP040094.1|WP_174708620.1|969379_969775_-|hypothetical-protein
MPAQKRTYRVLEKAELRVAGLKAIDPSMDFGDARNLQNMTQLIEQYRSKIDAYNTALAVIDSSRTEMEELDKILSDLTEKMLIGVAFKYGKDSREYEMAGAVRKSDRIRKSRATRLRATPKELASENAKTA
>NZ_CP040094.1|WP_174708621.1|969909_970176_+|transposase
MNRTILLMNRIILLMKRMSLLMNRMILLMKRMSLLMNRMILLMKRMSLLMKSSAINRLKQFRHIATRYEKLAANYTAMIAIASILLWL
>NZ_CP040094.1|WP_174708622.1|970370_970631_+|hypothetical-protein
MEKHKRSYNSHLEINNLIDDAVNNAVARRNQGLDSEDALSSVSDEEAKSVAGGIAAVATVGLIAKPPIIIGRIITTGIIAIPTETI
>NZ_CP040094.1|WP_174708623.1|970664_971102_+|nitrogen-fixation-protein
MENIAADKTTLCPSARPESEDSVVFGIISGTVAEPRVAYLKQPQPLTDELIAKANPITPAEIFRTAAPCATKACQHFDGQDCRLATRIIEKLPTVAEELPPCSIRRDCRWWQQEGKAACMRCPQVITDNYNASELAIKVAIPTAN
>NZ_CP040094.1|WP_174708624.1|971446_971764_+|Nif11-like-leader-peptide-family-natural-product-precursor
MSLENVRAFYERLASDEVFRVQIQGVESKDAGREILKNAGFDFSQQEFEEYTEQLLETTASDDDLKDLNEKELEAVFGGAIPVIFPGGLPILMYGVVITSIRFLF

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Crispr_ID: NZ_CP040094_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040094_4

1113127-1114039

Orphan

N:A

Consensus_repeat	Method
ATTGCAATTCATCAAAATCCCTATTAGGG----------ATTGAAAC	PILER-CR
ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC	CRISPRCasFinder
ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC	CRT

12 spacers

The CRISPR arrays of NZ_CP040094_4

>merge|NZ_CP040094|4|1113127-1114039|PILER-CR,CRISPRCasFinder,CRT
ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAACCCCCTGCCCCTGCTGCTATCGGAACAAATTACAAATTGCAATTCATCAAAATCCCTATTAGGGATTGAAACTCATATTCTCTCTGTTGATCTAGGACTGACATATTGCAATTCATCAAAATCCCTATTAGGGATTGAAACACACGAGCCAGAGGCTTTGGGATGATTTCGGTGTAGATTGCAATTCATCAAAATCCCTATTAGGGATTGAAACAGCGTCGATCGGCTCCTTGGCATCTCTCCCAAACTTCGCATTGCAATTCATCAAAATCCCTATTAGGGATTGAAACATATATAGCGGTTAGTAGCCCACCACCCCCAGAGGCAGCATTGCAATTCATCAAAATCCCTATTAGGGATTGAAACAATTTTTCCGGTTAACCAATCTCTACCCGCTTGAATTGCAATTCATCAAAATCCCTATTAGGGATTGAAACTAGCTCCCTTCTGCTATTGATTTCCCCTTTACCATTGCAATTCATCAAAATCCCTATTAGGGATTGAAACCTAGTTCTAGCTGATAAAGGGATTTACCAGAACCAAATTGAATTGCAATTCATCAAAATCCCTATTAGGGATTGAAACAGGACAAACAACAACCATGTGAAGGTGCAAAGATTGCAATTCATCAAAATCCCTATTAGGGATTGAAACGTAGAGCTAATTTTATGGAGCAGCAAACATTAGCTATTGCAATTCATCAAAATCCCTATTAGGGATTGAAACTTAGAAGGCATGACTTATAATCCAGTTTTGGCGGGAAATTGCAATTCATCAAAATCCCTATTAGGGATTGAAACTTCACAGCTACGCTCCTCTGCGTAGCTGCGGCACTGATAAATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC

>NZ_CP040094|4|2|1113127-1114039|PILER-CR
ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC	CCCCTGCCCCTGCTGCTATCGGAACAAATTACAA
ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC	TCATATTCTCTCTGTTGATCTAGGACTGACAT
ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC	ACACGAGCCAGAGGCTTTGGGATGATTTCGGTGTAG
ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC	AGCGTCGATCGGCTCCTTGGCATCTCTCCCAAACTTCGC
ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC	ATATATAGCGGTTAGTAGCCCACCACCCCCAGAGGCAGC
ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC	AATTTTTCCGGTTAACCAATCTCTACCCGCTTGA
ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC	TAGCTCCCTTCTGCTATTGATTTCCCCTTTACC
ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC	CTAGTTCTAGCTGATAAAGGGATTTACCAGAACCAAATTGA
ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC	AGGACAAACAACAACCATGTGAAGGTGCAAAG
ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC	GTAGAGCTAATTTTATGGAGCAGCAAACATTAGCT
ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC	TTAGAAGGCATGACTTATAATCCAGTTTTGGCGGGAA
ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC	TTCACAGCTACGCTCCTCTGCGTAGCTGCGGCACTGATAA
ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC

>NZ_CP040094|4|4|1113127-1114039|CRISPRCasFinder
ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC	CCCCTGCCCCTGCTGCTATCGGAACAAATTACAA
ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC	TCATATTCTCTCTGTTGATCTAGGACTGACAT
ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC	ACACGAGCCAGAGGCTTTGGGATGATTTCGGTGTAG
ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC	AGCGTCGATCGGCTCCTTGGCATCTCTCCCAAACTTCGC
ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC	ATATATAGCGGTTAGTAGCCCACCACCCCCAGAGGCAGC
ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC	AATTTTTCCGGTTAACCAATCTCTACCCGCTTGA
ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC	TAGCTCCCTTCTGCTATTGATTTCCCCTTTACC
ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC	CTAGTTCTAGCTGATAAAGGGATTTACCAGAACCAAATTGA
ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC	AGGACAAACAACAACCATGTGAAGGTGCAAAG
ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC	GTAGAGCTAATTTTATGGAGCAGCAAACATTAGCT
ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC	TTAGAAGGCATGACTTATAATCCAGTTTTGGCGGGAA
ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC	TTCACAGCTACGCTCCTCTGCGTAGCTGCGGCACTGATAA
ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC

>NZ_CP040094|4|2|1113127-1114039|CRT
ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC	CCCCTGCCCCTGCTGCTATCGGAACAAATTACAA
ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC	TCATATTCTCTCTGTTGATCTAGGACTGACAT
ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC	ACACGAGCCAGAGGCTTTGGGATGATTTCGGTGTAG
ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC	AGCGTCGATCGGCTCCTTGGCATCTCTCCCAAACTTCGC
ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC	ATATATAGCGGTTAGTAGCCCACCACCCCCAGAGGCAGC
ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC	AATTTTTCCGGTTAACCAATCTCTACCCGCTTGA
ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC	TAGCTCCCTTCTGCTATTGATTTCCCCTTTACC
ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC	CTAGTTCTAGCTGATAAAGGGATTTACCAGAACCAAATTGA
ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC	AGGACAAACAACAACCATGTGAAGGTGCAAAG
ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC	GTAGAGCTAATTTTATGGAGCAGCAAACATTAGCT
ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC	TTAGAAGGCATGACTTATAATCCAGTTTTGGCGGGAA
ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC	TTCACAGCTACGCTCCTCTGCGTAGCTGCGGCACTGATAA
ATTGCAATTCATCAAAATCCCTATTAGGGATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040094.1\|WP_174708721.1\|1109833_1111324_+\|BamA/TamA-family-outer-membrane-protein	unknown	unknown	gnl\|CDD\|227116
NZ_CP040094.1\|WP_174708719.1\|1107942_1109040_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP040094.1\|WP_174708718.1\|1107688_1107934_-\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|372995
NZ_CP040094.1\|WP_174708723.1\|1111792_1112815_+\|isopenicillin-N-synthase-family-oxygenase	unknown	unknown	gnl\|CDD\|226022
NZ_CP040094.1\|WP_174708725.1\|1114801_1115347_+\|shikimate-kinase	unknown	unknown	gnl\|CDD\|234654
NZ_CP040094.1\|WP_174708716.1\|1104619_1107337_+\|DUF3536-domain-containing-protein	unknown	unknown	gnl\|CDD\|212109
NZ_CP040094.1\|WP_174708729.1\|1117592_1118015_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174708717.1\|1107407_1107653_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174708727.1\|1116129_1116492_+\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NZ_CP040094.1\|WP_174708730.1\|1118184_1118727_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274513
NZ_CP040094.1\|WP_174708714.1\|1101665_1102805_-\|protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_CP040094.1\|WP_174708722.1\|1111418_1111790_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174708724.1\|1114138_1114372_-\|EF-hand-domain-containing-protein	unknown	unknown	gnl\|CDD\|227455
NZ_CP040094.1\|WP_174708733.1\|1120247_1120865_+\|FMN-dependent-NADH-azoreductase	unknown	unknown	gnl\|CDD\|224103
NZ_CP040094.1\|WP_174708728.1\|1116592_1117489_+\|acetylglutamate-kinase	unknown	unknown	gnl\|CDD\|239783
NZ_CP040094.1\|WP_174708726.1\|1115358_1115961_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NZ_CP040094.1\|WP_174708732.1\|1119772_1120099_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NZ_CP040094.1\|WP_174708715.1\|1103001_1104093_-\|calcium/proton-exchanger	unknown	unknown	gnl\|CDD\|273043
NZ_CP040094.1\|WP_174708731.1\|1118753_1119638_+\|DUF3153-domain-containing-protein	unknown	unknown	gnl\|CDD\|371485
NZ_CP040094.1\|WP_174708720.1\|1109074_1109542_-\|DUF4870-domain-containing-protein	unknown	unknown	gnl\|CDD\|225833

Protein	Function_ID	Function_description	E-value
NZ_CP040094.1\|WP_174708721.1\|1109833_1111324_+\|BamA/TamA-family-outer-membrane-protein	gnl\|CDD\|227116	COG4775, COG4775, Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane].	5.97665e-74
NZ_CP040094.1\|WP_174708719.1\|1107942_1109040_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	6.72174e-73
NZ_CP040094.1\|WP_174708718.1\|1107688_1107934_-\|HNH-endonuclease	gnl\|CDD\|372995	pfam14279, HNH_5, HNH endonuclease. This domain is related to other HNH domain families such as pfam01844. Suggesting that these proteins have a nucleic acid cleaving function.	2.67025e-21
NZ_CP040094.1\|WP_174708723.1\|1111792_1112815_+\|isopenicillin-N-synthase-family-oxygenase	gnl\|CDD\|226022	COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only].	2.30785e-110
NZ_CP040094.1\|WP_174708725.1\|1114801_1115347_+\|shikimate-kinase	gnl\|CDD\|234654	PRK00131, aroK, shikimate kinase; Reviewed.	4.14097e-81
NZ_CP040094.1\|WP_174708716.1\|1104619_1107337_+\|DUF3536-domain-containing-protein	gnl\|CDD\|212109	cd10797, GH57N_APU_like_1, N-terminal putative catalytic domain of mainly uncharacterized prokaryotic proteins similar to archaeal thermoactive amylopullulanases; glycoside hydrolase family 57 (GH57). This subfamily of mainly uncharacterized bacterial proteins, shows high sequence homology to GH57 archaeal thermoactive amylopullulanases (APU, E.C 3.2.1.1/41). Thermoactive APUs are type II pullulanases with both pullulanolytic and amylolytic activities. They have an acid pH optimum and the presence of Ca2+ might increase their activity, thermostability, and substrate affinity.	0
NZ_CP040094.1\|WP_174708715.1\|1103001_1104093_-\|calcium/proton-exchanger	gnl\|CDD\|273043	TIGR00378, cax, calcium/proton exchanger (cax). [Transport and binding proteins, Cations and iron carrying compounds].	2.9952e-135
NZ_CP040094.1\|WP_174708727.1\|1116129_1116492_+\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	1.47462e-19
NZ_CP040094.1\|WP_174708730.1\|1118184_1118727_+\|hypothetical-protein	gnl\|CDD\|274513	TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). [Protein fate, Protein and peptide secretion and trafficking].	0.000209045
NZ_CP040094.1\|WP_174708714.1\|1101665_1102805_-\|protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.73696e-69
NZ_CP040094.1\|WP_174708733.1\|1120247_1120865_+\|FMN-dependent-NADH-azoreductase	gnl\|CDD\|224103	COG1182, AcpD, Acyl carrier protein phosphodiesterase [Lipid metabolism].	2.34995e-82
NZ_CP040094.1\|WP_174708724.1\|1114138_1114372_-\|EF-hand-domain-containing-protein	gnl\|CDD\|227455	COG5126, FRQ1, Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only].	1.00323e-09
NZ_CP040094.1\|WP_174708728.1\|1116592_1117489_+\|acetylglutamate-kinase	gnl\|CDD\|239783	cd04250, AAK_NAGK-C, AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis. In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino Acid Kinase Superfamily (AAK).	1.00928e-171
NZ_CP040094.1\|WP_174708726.1\|1115358_1115961_-\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	1.13047e-44
NZ_CP040094.1\|WP_174708732.1\|1119772_1120099_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	6.14913e-29
NZ_CP040094.1\|WP_174708731.1\|1118753_1119638_+\|DUF3153-domain-containing-protein	gnl\|CDD\|371485	pfam11353, DUF3153, Protein of unknown function (DUF3153). This family of proteins with unknown function appear to be restricted to Cyanobacteria. Some members are annotated as membrane proteins however this cannot be confirmed.	6.81965e-38
NZ_CP040094.1\|WP_174708720.1\|1109074_1109542_-\|DUF4870-domain-containing-protein	gnl\|CDD\|225833	COG3296, COG3296, Uncharacterized protein conserved in bacteria [Function unknown].	5.89733e-32

>NZ_CP040094.1|WP_174708723.1|1111792_1112815_+|isopenicillin-N-synthase-family-oxygenase
MKNLQVVEKEFSSVPIIDISTLVSRKGNLHSVASQIRQACRESGFFYIIGHGVDEKLQQRLEELSRQFFAQDLETKLKIRMALAGIAWRGYFPVGGELTSGKPDLKEGIYFGAELPDEHPQVQAGTPMHGSNLFPANIPQFGETLLEYIEAMTNLGHTLMTGIALSLGLEESYFADRYTSDPLVLFRIFNYPPNLSPSDSDPLWGVGEHTDYGVLTILKQDDSGGLQVKSKSGWVATPPIPGSFVCNIGDMLDKMTAGLYRSTPHRVQNQSQNHRLSFPFFFDPNFDVEVKAIELDNIVANDNISDRWDNANIHDFRGTYGDYVLNKVSKVFPELRRTVL
>NZ_CP040094.1|WP_174708722.1|1111418_1111790_+|hypothetical-protein
MTIRCINNAEACIVNAEACIVNAEACIVNAEACIVNAEACIVNAEACIVNAEACIVNAAVCYVNAMACYVNAMACIVNAEACIRKDAINYHKDAINRRLYKRLIIVETAIHRVSYLNRTILPS
>NZ_CP040094.1|WP_174708721.1|1109833_1111324_+|BamA/TamA-family-outer-membrane-protein
MRVQITVVAIAAMLVSGKNLEALADSQPSTQDGASGIVTPEATIHIEGGYAQYGDYIGVSLADNQTLEISQKVVKDIQIRFLNSRGLPIRGRTQKDFVIGLLKLKPGQVFSKDLLQADLQRLRRLESFNQVNVYPKEDASSVNILYVIKERSFPSLIFGGGNNDDVGLYGQVGYRDENVSGVNDRLNTVLQFSTKDVQFNGQFTSRYRSEEPNRLGYSIRGFRSRNTSGTFNDDIRLADGSKVREGRFGGSVALLRSFDEWDTSVALNYTRISLRDGEYNVVQVDRLGSPLSVSGTGIDDLYTVSFAVSRDRRDRRDNPTQGSILTLITEQAIPIGLGNIFSNRLRGDYIQYLPVSWIGNGRPTDNPEMLAINLQIGTTIGDFPPADAFNIGGIDSVRGYGYGKVASGRSYGLASVEYRFPIFQSVGGVVFTDFASDFGSSDTVLGEPGVLRGKPGSGFGYGLGLRLNSPFGLIRGDLGISDQGEVRFEVTTGQRF
>NZ_CP040094.1|WP_174708720.1|1109074_1109542_-|DUF4870-domain-containing-protein
MRQKPKQQMRIWAVLCHFSALLGWILLVFIVFLGIPLYLPLNLLAPLMIWRFKKSQYPWIDLQGKESLNFQFSLTLYTLIVIIVSLILLLTSLSIVVTNNGSSNQIKNTLDGLIIVLVSLFSFKLVLQLFLVTFASVKAYKGEHYRYPLTIRVLR
>NZ_CP040094.1|WP_174708719.1|1107942_1109040_-|Gfo/Idh/MocA-family-oxidoreductase
MIGIAIAGTGFGQKVHIPGFQAHPQTEVVAVYHRDINKAKAIAESHNIPHSSDSLADIVALPEVQAVSISTPPFLHYEMAKTVLQAGKHLLLEKPTTLNAIEAKELYQLAKAKGVIATVDFEFRFVPAWQLFAELLSENYVGELRLIKIDWLGSSRADTSRPWNWYSDKEKGGGALGSLGSHAFDYIHWLFGPVRRLNAHLTTAIPTRVDPVSGESKPVNTDDNCILTLELANGTPCQLSISAVVHAPRTHWVEVYGDRGTLIVGSENQKDYIHGFRVWGSQTGKPLTEIEIPNRLIFPKNYADGRISAFIRVVDEWVQGIERNQEITPSLREGIYSQLLMDLSHESHTKTSWVDVPSLEEFLNH
>NZ_CP040094.1|WP_174708718.1|1107688_1107934_-|HNH-endonuclease
MSKTPRIRIPPEVKKYVFERDKYQCQSCGKTTTETHLSIDHIIPLGRGGQNDISNLQTLCLTCNQQKTDNIDPRFRRYFEL
>NZ_CP040094.1|WP_174708717.1|1107407_1107653_-|hypothetical-protein
MPQNHNSNSRRFPNIKTTILYLFTFMTVLVIAFPWLYEVKTKAGINISRSRHAGTFFEKHTHGLFKCEWLYPYHCDRSQVK
>NZ_CP040094.1|WP_174708716.1|1104619_1107337_+|DUF3536-domain-containing-protein
MTSAAEMPASSGSTLTLHSDPNNTRETDPLRKANGVYVTVHGHFYQPPRENPYLDAIERQPSAAPFHDWNERIHWECYRPNAFARVLNDQGEVVGIVNNYEYFSFNIGATLMSWLERYDVEVYQRILEADTKSSQRLHGHGNAIAQVYNHIIMPLANERDKYTQIRWGKEDFRSRFGRDPEGMWLAETAVDYATLEALVAEGIRFIILAPSQALRCRPLPTQDHPHPEWIEVGGSQIDSTRPYRCYLKPTLDTSSSPLSAIATSPKDGSREELPYIDIFFYDGPISRDMGFSDVVYNSSHFAGRISSAVRGDHRPAQLISVATDGETFGHHKKGTEKTLAYAFTKEFPQQGWTVTNFAHYLSLNSPSWEVELKSVTAWSCAHGVGRWEDDCGCGGEGGVWHQKWRRPLRDALNWLRDQLTEVYEEHGRQLFRDPWQTRDEYIQVMRDRSAGNVNRFLARHQTHKLTAAEQVDALRLLEMQRHALLMFTSCGWFFEEISRPEGTQILRYAARALELAGEVAGVQLEKGFVKRLGLAPSNVDEFKHGAEIYRQLVLTAQLGFKQVASHYAITSLFNNQKPAQTHNSLPRKDVADKQSQRYHKKVYCYAANELDYQLQRMGSLTLAVGNLKLVSEITWESEHLVFAVLHLGGWDFHCCIQQFTGRRDYSQIKEKLFGALKQASAAHTILAMTQLFGEEAFSLQNLFAEERHRIMRLLSQETLTRLGQLYTQAYRDNYGVLMAFHRDELAVPQELQVAADIALGHRCLMTLRSLEQEIADPQKSWSHILELEAIATEAKHLRCRLNIPDGKQMLEQLIARSLWQLLHDANGSFNADIQLLERLIDVGDQLNIDVSLQRSQELYFSCLHSQIAPVCITSVGNEADNQCLQLLKLGKKLAVDVSAISNQLR
>NZ_CP040094.1|WP_174708715.1|1103001_1104093_-|calcium/proton-exchanger
MSTKNIILFVLLLFIPVSVAAHFLEWGELIVFITAGLAILPLAAWMGTATEEIAVVVGPSLGGLLNATFGNATELIIALVALNAGLIDVVKASITGSIISNLLLVMGFSMLLGGLRYKEQTFQPIVARVNAASMNLAVIAILMPTAMNYTSQGINEQTLQNLSIAVAVVLILVYALTLLFSMKTHSYLYDVGVAETEEEETPHAKPNMMLWVGVLLVCTLLVALESEMLVDSLEVATSQLGLTALFTGVILVPIVGNAAEHATAVTVAMKDKMDLSLSVAVGSSMQIALFVAPVLVIAGRVLGQPMDLDFKPFELVAVVVSVLIANSISSDGKSNWLEGTLLLAAYTVLGFAFYFHPVMESMG
>NZ_CP040094.1|WP_174708714.1|1101665_1102805_-|protein-kinase
MSYCLNPHCPKPENPADVKFCRTCGSKLLLKERYRAIKPIGQGGFGKTFLAVDEDKPSKPRCVIKQFYPQSQGTNTLAKAVELFNQEAVRLDELGKHPQIPELLAYFTQEARQYLVQEFIDGQNLAQELAHLGAFNETQIRQLLNDLLSVLQFCHARHVIHRDIKPENIILRNGDGKLVLVDFGAAKSAIGNALNQTGTSIGSPEYVAPEQMRGRAVFASDIYSLGATCINLLTQRSPFDSYDTHNDAWVWQQYLKTPVSNELSRIINKMLESIPIRRYQTVDEVLKDLNHQSQVAATPAISQKSIPQSLPNSPATFVSPSPSQIDLELEELKTQFLVGNKPQPNKIQPPTPTSQPTSTNEIDRELEELKAKYLGNNNP
>NZ_CP040094.1|WP_174708724.1|1114138_1114372_-|EF-hand-domain-containing-protein
MTTEQELQSLFNTLDSDRDGKVSINDLFLSPGLSAIISSETNTSSPQELLVNYDSDKDGSITFEELKEAVEKANNLN
>NZ_CP040094.1|WP_174708725.1|1114801_1115347_+|shikimate-kinase
MGSLLQGVNLYLIGMMGVGKTTIGPLLAKHLGYGFLDLDGVIAKATGKSINQLFAEEGEAGFRQIESDVLSQVCAFTKLTIATGGGIVLRRENWGYLHHGLIVWIDVPVELIYKRLAEDTTRPLLQDSDLKVKLRSLLEQRTPLYSQADLHIIVQEGDTPEDIAKRILEAIPGVLKPQASH
>NZ_CP040094.1|WP_174708726.1|1115358_1115961_-|Uma2-family-endonuclease
MTTLLIQTESTPLTVNFPWLVQMTNEQFYEFCQANGDLRIERTANGEVIIMPPAFSDTGNRNFNIAAQLGNWTEQDGTGIGFDSSTGFTLPNGAMRSPDASWIQLERWNVLTDLQKASFAPICPSFVIELRSSSDRLSKLQEKMQEYIDNGTSLGWLIDRQNRKVYIYRPNREVEILDNPEAVMGNPELPGFILRMGKIW
>NZ_CP040094.1|WP_174708727.1|1116129_1116492_+|pentapeptide-repeat-containing-protein
MDIEEFFSRLDTGEKDFSGVDLSGAVLSEVDLSGINLSGADLSGAILCKTKLWGTDLRDANLSGADLRGADLRVTRMEGVNLENANLLEVNWRGAEKYGTYFYNTVMPDGELLTEPNIYG
>NZ_CP040094.1|WP_174708728.1|1116592_1117489_+|acetylglutamate-kinase
MTVNDSEYIRQTEATRVRVLSEALPYIQQFAGRTVVVKYGGAAMKDTALKDKVIRDIVFLSCVGLRPIVVHGGGPEINSWLDKLGIEPQFKNGLRVTDAATMDVVEMVLVGRVNKEIVALINQAGGLAVGLCGKDGNLFTARPQGQEDIGFVGEVSNVNIKILETLASNGYIPVVSSVAADETGQAYNINADTVAGEIAAALGAEKLILLTDTSGILKDYKDQSTLIPKVDIREARELIVNGIVTGGMIPKVNCCVRSLAQGVRAAHIIDGRIPHALLLEIFTDVGIGTMILGSQFTS
>NZ_CP040094.1|WP_174708729.1|1117592_1118015_-|hypothetical-protein
MLKIKHSQLNWLLGGMTLGVIGVSIAPASAQRAIAVDGAYGVMRGCGAACRQTSPAVGSFTYGSPIPTPMPVDPATGLMPQRTNYPDYSYPQVRQNVRNSNRINPTIRDSTLVNPVIINNSWQRTPFSGGRSRVIITYPR
>NZ_CP040094.1|WP_174708730.1|1118184_1118727_+|hypothetical-protein
MSAESLEIAKTFYQTGKIAFENGRYREAVENLEKASALLARNSRFGGEVEICLVTAYEAAGRTDEAIALCERLKRHPYIEISKQARQMVYILKAPKLKRPSEWMTEIPDLDTLQENELKISIAAKATKSSVQQKPKPTEPEFVDLSQVNTRDNRFIWVALIAIGLTISYLVWLNFSGTPG
>NZ_CP040094.1|WP_174708731.1|1118753_1119638_+|DUF3153-domain-containing-protein
MVTTSSIFGKILLWLIRPFSFVLTLNGRNRMNRVFPMRNPILWLVLLTSLLLTGCVKYDVGLNFDNSNSGEFVQHIKLGERLTSFSGDSVYEWLNSIERRARQLEGKTQRVSQEEIIVTIPFSSGSELQEKFNEFFNSRTNQSSEAVQSKSDSELPKIESNVLLEENNFLLLVRNRLIYDLDLRSLALIASKGNVLANAGSILDLEFSLKTPWGAKNIQLTATAIEPEKNGNQLVWKLQPGQLNHIEAVFWLPSPLGIGALLIILFVWGGLYLRYNFMPDPRTQLLPKAAAIQE
>NZ_CP040094.1|WP_174708732.1|1119772_1120099_-|helix-turn-helix-transcriptional-regulator
MSVSKNSDACPISILMSLLSGPWTMYILWVLCNSGPTRFGALKHLVEGISTKVLTERLRMLEAAEIIYRQYEPTVPPQVTYGLTERGQELIDVLHQLNALAERWYGSE
>NZ_CP040094.1|WP_174708733.1|1120247_1120865_+|FMN-dependent-NADH-azoreductase
MVNILHIDSSPRGERSHSRELSKEFVSAWKAAHPEDAIAYRDLGRHPVPHVDEAWIAAAFSPPETHTPELTEAIRISDELIDEFLAADRYVFGVPMYNLNIPSTFKAYIDQIVRANRTFAVDAQGLRGLVEGKKAVIITARGSDFSPTSPYAAYDFQEPYLRAIFGFIGITDIQFINANSLNEGDARTKSLSEARAAIQDAIAQW

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Crispr_ID: NZ_CP040094_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040094_5

1386988-1387192

Orphan

N:A

Consensus_repeat	Method
TAATCTTAGCCTAATAGCAAGTACTGTCTCTGGCAATACGGCAAACTA	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP040094_5

>merge|NZ_CP040094|5|1386988-1387192|PILER-CR
GCCTGATAGGAAGTCGTGTCTTTGGCAATACGGGTGACTTCGGTGGTGGCATCTATAATGACGGTTCCACTGCAAACACTGGTAATCTTAGCCTAACGGCAAGTACTGTCTCTGGCAATACGGCAAACTATGGTGGCGGCATCTACAACAAAGGCGGTACTCTTAACCTCATAGCAAGTACTGTCTCTGGCAATAAGGCAAACTA

>NZ_CP040094|5|3|1386988-1387192|PILER-CR
GCCTGATAGGAAGTCGTGTCTTTGGCAATACGGGTGACTTCGGTGGTGGCATCTATAA	TGACGGTTCCACTGCAAACACTGGTAATCTTAGCCTAACGGCAAGTACT
GTCTCTGGCAATACGGCAAACTATGGTGGCGGCATCTACAACAAAGGCGGTACTCTTA	ACCTCATAGCAAGTACT
GTCTCTGGCAATAAGGCAAACTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040094.1\|WP_174708923.1\|1374673_1376191_+\|alpha,alpha-trehalase	unknown	unknown	gnl\|CDD\|224541
NZ_CP040094.1\|WP_174708929.1\|1384247_1385294_-\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340839
NZ_CP040094.1\|WP_174708926.1\|1378186_1379743_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP040094.1\|WP_114081431.1\|1391971_1392334_+\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|235418
NZ_CP040094.1\|WP_174708928.1\|1383423_1384083_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174708922.1\|1371604_1374403_+\|malto-oligosyltrehalose-synthase	unknown	unknown	gnl\|CDD\|225819
NZ_CP040094.1\|WP_012412093.1\|1394250_1394964_+\|50S-ribosomal-protein-L1	unknown	unknown	gnl\|CDD\|177051
NZ_CP040094.1\|WP_094331819.1\|1392823_1393045_+\|preprotein-translocase-subunit-SecE	unknown	unknown	gnl\|CDD\|236066
NZ_CP040094.1\|WP_012412097.1\|1397266_1397584_-\|DUF2605-domain-containing-protein	unknown	unknown	gnl\|CDD\|371248
NZ_CP040094.1\|WP_094331820.1\|1393044_1393686_+\|transcription-termination/antitermination-protein-NusG	unknown	unknown	gnl\|CDD\|180161
NZ_CP040094.1\|WP_174708931.1\|1390867_1391812_-\|glycosyltransferase-family-2-protein	unknown	unknown	gnl\|CDD\|366154
NZ_CP040094.1\|WP_012412092.1\|1393692_1394118_+\|50S-ribosomal-protein-L11	unknown	unknown	gnl\|CDD\|234661
NZ_CP040094.1\|WP_174708921.1\|1369373_1371221_+\|malto-oligosyltrehalose-trehalohydrolase	unknown	unknown	gnl\|CDD\|274114
NZ_CP040094.1\|WP_174708925.1\|1377060_1377603_-\|phycobiliprotein-lyase	unknown	unknown	gnl\|CDD\|381208
NZ_CP040094.1\|WP_174708932.1\|1395298_1395913_+\|50S-ribosomal-protein-L10	unknown	unknown	gnl\|CDD\|234632
NZ_CP040094.1\|WP_174708924.1\|1376250_1376397_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_163932347.1\|1396636_1396966_-\|DUF2973-domain-containing-protein	unknown	unknown	gnl\|CDD\|371413
NZ_CP040094.1\|WP_012412081.1\|1376470_1376800_-\|RNA-binding-protein	unknown	unknown	gnl\|CDD\|240845
NZ_CP040094.1\|WP_012412095.1\|1396005_1396398_+\|50S-ribosomal-protein-L7/L12	unknown	unknown	gnl\|CDD\|214358
NZ_CP040094.1\|WP_174708927.1\|1379796_1383069_+\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|334294

Protein	Function_ID	Function_description	E-value
NZ_CP040094.1\|WP_174708923.1\|1374673_1376191_+\|alpha,alpha-trehalase	gnl\|CDD\|224541	COG1626, TreA, Neutral trehalase [Carbohydrate transport and metabolism].	2.307e-152
NZ_CP040094.1\|WP_012412081.1\|1376470_1376800_-\|RNA-binding-protein	gnl\|CDD\|240845	cd12399, RRM_HP0827_like, RNA recognition motif in Helicobacter pylori HP0827 protein and similar proteins. This subfamily corresponds to the RRM of H. pylori HP0827, a putative ssDNA-binding protein 12rnp2 precursor, containing one RNA recognition motif (RRM), also termed RBD (RNA binding domain) or RNP (ribonucleoprotein domain). The ssDNA binding may be important in activation of HP0827. .	3.0632e-30
NZ_CP040094.1\|WP_174708926.1\|1378186_1379743_+\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	4.71476e-43
NZ_CP040094.1\|WP_114081431.1\|1391971_1392334_+\|50S-ribosomal-protein-L19	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	3.67248e-65
NZ_CP040094.1\|WP_174708932.1\|1395298_1395913_+\|50S-ribosomal-protein-L10	gnl\|CDD\|234632	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed.	1.11353e-62
NZ_CP040094.1\|WP_174708922.1\|1371604_1374403_+\|malto-oligosyltrehalose-synthase	gnl\|CDD\|225819	COG3280, TreY, Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism].	0
NZ_CP040094.1\|WP_012412093.1\|1394250_1394964_+\|50S-ribosomal-protein-L1	gnl\|CDD\|177051	CHL00129, rpl1, ribosomal protein L1; Reviewed.	1.71577e-147
NZ_CP040094.1\|WP_094331819.1\|1392823_1393045_+\|preprotein-translocase-subunit-SecE	gnl\|CDD\|236066	PRK07597, secE, preprotein translocase subunit SecE; Reviewed.	3.86959e-16
NZ_CP040094.1\|WP_012412097.1\|1397266_1397584_-\|DUF2605-domain-containing-protein	gnl\|CDD\|371248	pfam10792, DUF2605, Protein of unknown function (DUF2605). This family is conserved in Cyanobacteria. The function is not known.	1.45204e-57
NZ_CP040094.1\|WP_094331820.1\|1393044_1393686_+\|transcription-termination/antitermination-protein-NusG	gnl\|CDD\|180161	PRK05609, nusG, transcription antitermination protein NusG; Validated.	1.0705e-90
NZ_CP040094.1\|WP_174708931.1\|1390867_1391812_-\|glycosyltransferase-family-2-protein	gnl\|CDD\|366154	pfam00535, Glycos_transf_2, Glycosyl transferase family 2. Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl- galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.	1.52065e-35
NZ_CP040094.1\|WP_012412092.1\|1393692_1394118_+\|50S-ribosomal-protein-L11	gnl\|CDD\|234661	PRK00140, rplK, 50S ribosomal protein L11; Validated.	3.84068e-93
NZ_CP040094.1\|WP_174708921.1\|1369373_1371221_+\|malto-oligosyltrehalose-trehalohydrolase	gnl\|CDD\|274114	TIGR02402, Malto-oligosyltrehalose_trehalohydrolase, malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system. [Energy metabolism, Biosynthesis and degradation of polysaccharides].	0
NZ_CP040094.1\|WP_174708925.1\|1377060_1377603_-\|phycobiliprotein-lyase	gnl\|CDD\|381208	cd19433, lipocalin_CpcS-CpeS, CpcS/CpeS phycobiliprotein lyase family. Phycobilin lyases covalently attach a chromophore to the Cys residue(s) of cyanobacterial phycobiliproteins. They include Synechococcus sp. PCC 7002 phycocyanobilin lyase CpcS which attaches a phycocyanobilin chromophore to C-phycocyanain beta subunit and to allophycocyanin alpha and beta subunits, Synechococcus sp. PCC 7002 phycocyanobilin lyase subunit CpcU which forms a heterodimer with CpcS-I to attach phycocyanobilin to beta-phycocyanin and to allophycocyanin subunits, and Prochlorococcus marinus phycoerythrobilin lyase CpeS which attaches 3Z-phycoerythrobilin to phycoerythrin. This group belongs to the lipocalin/cytosolic fatty-acid binding protein family which have a large beta-barrel ligand-binding cavity. Lipocalins are mainly low molecular weight extracellular proteins that bind principally small hydrophobic ligands, and form covalent or non-covalent complexes with soluble macromolecules, as well as membrane bound-receptors. They participate in processes such as ligand transport, modulation of cell growth and metabolism, regulation of immune response, smell reception, tissue development and animal behavior. Cytosolic fatty-acid binding proteins, also bind hydrophobic ligands in a non-covalent, reversible manner, and have been implicated in intracellular uptake, transport and storage of hydrophobic ligands, regulation of lipid metabolism and sequestration of excess toxic fatty acids, as well as in signaling, gene expression, inflammation, cell growth and proliferation, and cancer development.	2.42507e-52
NZ_CP040094.1\|WP_163932347.1\|1396636_1396966_-\|DUF2973-domain-containing-protein	gnl\|CDD\|371413	pfam11189, DUF2973, Protein of unknown function (DUF2973). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently they have no known function.	6.9083e-36
NZ_CP040094.1\|WP_174708929.1\|1384247_1385294_-\|glycosyltransferase-family-4-protein	gnl\|CDD\|340839	cd03811, GT4_GT28_WabH-like, family 4 and family 28 glycosyltransferases similar to Klebsiella WabH. This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.	2.56819e-52
NZ_CP040094.1\|WP_012412095.1\|1396005_1396398_+\|50S-ribosomal-protein-L7/L12	gnl\|CDD\|214358	CHL00083, rpl12, ribosomal protein L12.	2.3995e-55
NZ_CP040094.1\|WP_174708927.1\|1379796_1383069_+\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|334294	pfam00873, ACR_tran, AcrB/AcrD/AcrF family. Members of this family are integral membrane proteins. Some are involved in drug resistance. AcrB cooperates with a membrane fusion protein, AcrA, and an outer membrane channel TolC. The structure shows the AcrB forms a homotrimer.	0

>NZ_CP040094.1|WP_174708929.1|1384247_1385294_-|glycosyltransferase-family-4-protein
MRIIHILNHVQEIGNGIVNVAVDLACLQAKSGYEVAVISAGGEYEKLLNICGVKHYQLDQTRKPISIIKAAVRYRAIAAEFQPDIVHAHMMTGVILARIFQGNKYTLVSTVHNEFQRSSLLMGLADRVIAVSKAVRDSMAKRGIPENKLRVVCNGTLGSPRTRQIQDYQPLGLQRPAIATVAGMYQRKGIAELIAAFEQIAPDFPQAHLYLVGNGPDKQLFEAQAQATSVKERIHFEGFQPEPQRYLISCDIFVLASHRDPCPLVLSEAREAGTAIVGTQVDGIPEALDNGQAGLLVPAKDSKALAGVLVQLLSNADMLHEWKNRANQNLQWLSVARVHQETLAVYRD
>NZ_CP040094.1|WP_174708928.1|1383423_1384083_+|hypothetical-protein
MTTSVTKIALSLLGAAGISFLSLTPARAVILVEPIVTSVNEDIFNTKKPRILTDYEPGQVIEYGVPDVANNFLNNTGYDIESLVFDLKTLAYTNPDSTPAFNNEPVEWGDVNGDGKIGLSNNPDLKDIFTDINISGTTITFSGGVIPNGSLFYNPFATQPNLAPGAGIIPAIPAEQADKDGPIRVAAYYTAVPESTNVLGVLVLGAVGVALKLKRSLHY
>NZ_CP040094.1|WP_174708927.1|1379796_1383069_+|efflux-RND-transporter-permease-subunit
MQQANNNGNGGFSLSAIAIRQHIGTLMLTVAVIVIGVFFLTTIQVDLLPAITYPRIGVRLEAPGISPEVAVDEITRPLEEALRATENVVQVFSRTREGQVSLDLYFQPGGDIDQALNDATAAFNRGRGQLPDTIEEPRLFKVDPSQLPVYELALTSASLQGKDLRVFADEELTRELSVVPGVASVDVSGGAEEEVRVLVDLNRLQALGVGLNDVLDELTARNQDTSGGRIFGQNSEPLTRTVGRFQNAKEIENLSLEVSSPASPASSASPAPRRRVYLRDFAEVIDDTEEQRVFVYLNRQPAVKFSIQKQPEANTITVVDAVKRRIEQLRQSGLIPADMTLSPTTDESVFIRNSLNDVIFSGISGALLAAAAVLLFLGSFRQTLIISLTIPLCTLAAIALMKIFGLTLNVFSLAGLTLGVGQAIDTSVVILENISEKTGMTPNQKEMESEGQRRNSRFFIDSAIAASQEVESALVAATGANLVSVVPFLLIGGFIALLFNELILTISFAVAASLVVAITVVPMLSSRLLGIRWSSRISEFWLLRQFNNRFEDATRGYGNFLTKVLRYRLFVVTAALVILGGSSFFMFGKIPQEILPRISTGQANLRAQFPPGTPLATSEKVMQIVDDILLKQPETESAFTTVGGSLFGSNTTENPLRASSTINLKPGTDVEAFVKKVTQEFNKLNLAGILLRLNPGQVRGLILSNSPVQGSEVDVILQGENEENLTQAGAQVLQALQERAKLATFRPDADPRQPEIQIRPDWERVSALGLSAGQIGATVQTAIEGSVPTQIQRGNRLVDVRVQLNKEAIQRPSQLEQLPLFTENNQLIRLSDVANIQEGQAPGEVQRINQRQAFIVAGNLTEGASLGEAIAEVNEVLQDVDLPDGVSIVPSSAQETNQQLQDALKTLGALATFLIFVVMAVQYNSLIDPLVIMFTVPLALAGGIFGLYITQTAIGATVIVGVVLLVGIVVNAGILMVELANQIREEVGCTRQIAIVKAAPQRLRPIIMTTVTTILGLFPLALGIGEGSEFLQPLGIVVFFGMAIATMLTLFIIPCFYILLHDLLGENWAKPVLIRLRGFTKKLISIMDRD
>NZ_CP040094.1|WP_174708926.1|1378186_1379743_+|efflux-RND-transporter-periplasmic-adaptor-subunit
MILEKNKPHKQVKMKDPVVANQLIIIQLDSVVKTEVATADFKSRLLANSICATGGKAKGKNSFFSSTSVRSLLISCLVAIGLLTASCGSSPKESADAQSQSPGNRERSRVTPVDVAIARTDLLQKQLEYTGNTTPFRIVSLRSQVEGRLLALNLDVGDRVKLGQNVGQLNDAILSTELKQAEAELAALKSEVARTNNQVSNARADVERARLEVVQAQADSERQQRLFKAGAIAEQTAQQSRTQAKTAAQALRAAQEQVRTEQQAVAAAQGRVLAQQALVAQTKERRSYARLTSPIAGIVTEKVTEPGNLLQAGNEVVKIGDFNRVKVVVLVSELELAQIQVGQSVQVRLDAFPKEILIGRVTRISPAADATARLIPVEVVIPNAQGKIGSGLLARVNFENQTQQRVVVPQTAIQKQTGSNNSKGTGEMQTNVRQDSSPPNTSGIAEIKSQDRSGTIFVVKDTEGKTKVTTRAVMFGKKVDGRVEILSGLQAGERYVVRSGKPLKEGDTVSLSILSEKQ
>NZ_CP040094.1|WP_174708925.1|1377060_1377603_-|phycobiliprotein-lyase
MTSLFKTAQTTDESQISEFFQESAGKWRSQRRYYTLPKGETKEIESIVTIDFLEQGCDELQKLAQMHDLLDAGSLICGAAIVWESTDVSKTKKESQGSTIFGVKGNTLYRDRGFAISKPVTAQYYFSSPKTLCLRTKYNGSVFEEELKLIGSKYRTRQTIISRAGEQLMIGQYLENRIES
>NZ_CP040094.1|WP_012412081.1|1376470_1376800_-|RNA-binding-protein
MSIYVGNLSYEVTQDALSTVFAEYGSVKRVQLPTDRETGRLRGFAFVEMSSEDEETKAIESLDGAEWMGRDLKVNKAKPREDRGGGGSFGGNRGGGGGGYNRGGGGGRY
>NZ_CP040094.1|WP_174708924.1|1376250_1376397_+|hypothetical-protein
MVQLAPKVLTVDEFISHHVSAIAMNWCFLSKILSSFLTNLRNVGFIAN
>NZ_CP040094.1|WP_174708923.1|1374673_1376191_+|alpha,alpha-trehalase
MIAPPALTTTQIDTVRAHIKKTWKILTRSHEHLLQSAKDTKLDHKTDTPWIVYISPLEDCPNIQNVLERSLSSKDMQGIEIRTLPSEVEAIKQHGLLYLPGPYVVPGGRFNEMYGWDSYFILLGLLHDQEWELAQNQVDQLLYQVKHYGTILNANRTYMLSRSQPPVLSMMVLALFQHTQDEEWLRTTVPLLEQFYYYWVVPPHLNPGTGLSRFYAFGEGPAPEVVFSERDEEGKSHYDRVKEYYQTFEVEDYDVDLYYDRENDKLTHLFYKGDRTMRESGFDITNRFGPFSADILHYAPVCLNSLLYQVEQDLAQINNILGNEQLEKQWRDRGEYRRDRIDQFLWNEERGLYCDYHFQSGKRRCYEFATTFYPLWLGISSQAQAQRVVENLSLFEAPGGILTSTRVTGNQWDAPFGWAPLTLIAVQGLHRYGFHTEGDRIANKFLAMVIKEFERHNTLVEKYDVERCSANVSDDISFGYSSNEVGFGWTNGVILELLAVGRKKV
>NZ_CP040094.1|WP_174708922.1|1371604_1374403_+|malto-oligosyltrehalose-synthase
MRIPTATYRIQFTPQFGFDNAKAIAAYLADLGISDLYASPIFKARSGSTHGYDIVDATQLNPELGTNESFDALVSEVQSLGMGWLQDIVPNHMAYSSENDYLMDILEHGPDSSYTDYFDLSWNAPFGDRQERILAPLLGDFYGASLENGHIQLQYEQNGLTVNYYSLKLPLRLESYTKFITHNLGKLTRTLGRNHPDFIKLLGILYILKSVPSEVAGKQRQDQIAFIKGLLWELYTTNDAIREFIDENIQTFNGEPGNSDSFNLLDELLNDQFYRLAFWKVGAEEMNYRRFFTVNELISVKVEEVRVFNNTHSLINKLVEEGKFTGLRIDHIDGLYNPIQYLQRLREKTGDVYITVEKILEITEDLPEKWEIEGTSGYDFLNYVNGVFCQTENESSFDKIYQNFIGSRVDYSSVVKDKKHLILEKNLAGDIDNLALLLKNISSKYRYGNDFTLNGLKRAIAEVLTLFPIYRTYITPDGIGDSDRATIQEVISQAKEQTPLLQHELTFIEKLMVLDFDNSLTQTEREQWIYFVLRMQQYSGPLMAKGVEDTTLYVYNRLLSLNEVGGNPGHFGIDLAKFHAFNKQHQATWPHTMNTTATHDTKRGEDVRARLNVLSEIPDEWDQQVNTWSAINRGSRSHRHGFAIPDRNDEYFLYQTLVGAFPFAEQEHASFVERVKDYIIKAIREAKVHTAWLRPDSEYEEACTSFIEKILDPSISGEFLEAFRPFQQRIAEYGIFNSLSQTLLKITAPGVPDLYQGTELWELSLVDPDNRRPVDFEQRRTYLSAIREHVKTDILGLIQELLNDKTDGRIKLFLTAQLLQARTNYVSLFQDGDYLPLEVQGTYANHIIAFARREGNQTAIAIAPRFLTSLIQPGDNPLGESVWQDTHLQLPSGTPLTWTNVLTQQPLQATETLFIGSALAHFPVALLVGTAD
>NZ_CP040094.1|WP_174708921.1|1369373_1371221_+|malto-oligosyltrehalose-trehalohydrolase
MRIGANYLGNGECEFTVWSPLLDSVTVKTLTPQEQVIPLKPQSEGYWHAKVNDVYPGTLYRYVLNGQDAFADPASQYQPEGVHGPSQIVDHHFEWTDEGWTGIPVESMIFYELHVGTFTPEGTFTAIISRLPELRELGINAIEIMPISQFPGDTHIEATLAYRNWGYDGVYPFAVQNSYGSPAELKELVNACHQNNIAVVLDVVYNHFGPEGNYMSQFAPYFTKTYKTPWGEALNFDDAHSQGVRNYFIENALYWLREFHIDALRLDAIQAIYDLGAKHFLWELAEAVHHFSEQGQKWKRHLIAESDLNNPQIIRPPELGGYGLDAQWSDDFHHSLHALLTGDRQGYYQDFGQVAQLAKAYEDTFVYDWKYAPHRKRFHGISCRDRNLSQFSVCIQNHDQIGNQMKGERLSQRISFEGLKLAAGAVLLSPNLPLLFMGEEYGETAPFIYFVSHSDPDLIQAVRAGRKEEFEAFHYADDPPDPESAETFLKSKLNWQLRHEGKHKVLWDWYRQLINLRKTHPVLLNQDRNFIEATSDEDKQLVIVRRWCESSELIFVMNFNSSPITATLPIQHNANKLLDSADTSWSGPGSEADEHLSAGKEVKLQPTSLVLYEKG
>NZ_CP040094.1|WP_174708931.1|1390867_1391812_-|glycosyltransferase-family-2-protein
MKFSVVISTYNRLNLLKRAIESARNQTIECEVVVADDCSSDDTQTYLKSLGDKVVYHRNEVNLGHAATVNAGVAKASGDWIKFLDDDDYLAPNCIEEMAKAIALRPDAVICSCVAAQVDGNELELSRTPQVGPGLAFYIPQADIHYGMLLELVPFGTPVQVACRRDAFLQTGGWDSTLDANCDDIDSWIRIAQFGDAIFFNQCLAYRTIWPGAYNQKFSLSRRLATNILMKEKIYALVNEQHRSKIPGFQDIKNYLKLHWILVSLKQKNLKSFFSMIDPSILSPKSWKFLLSAASSRRSQGNNSEVRKLVLIES
>NZ_CP040094.1|WP_114081431.1|1391971_1392334_+|50S-ribosomal-protein-L19
MSAQEIIRSIEAEQLKSNLPDIFVGDTVKVGVKIKEGEKYRVQPYEGVVIAKRNGGINETITVRKVFQGVGVERVFLLHSPRIDSIKVLRRGKVRRAKLYYLRDRVGKATRIKQRFDRPL
>NZ_CP040094.1|WP_094331819.1|1392823_1393045_+|preprotein-translocase-subunit-SecE
MAKKSEAELPETTNGFSLGNFIQGTKEELDKVVWPSRKQIVSESAAVLLMVALSASLIYLVDGLFGWAAKQVF
>NZ_CP040094.1|WP_094331820.1|1393044_1393686_+|transcription-termination/antitermination-protein-NusG
MTFATDEPRNSTLQSEETGETAEAASKEARWYAVQVASGCEKRVKTNLEQRIQTFDVADKIIQVEIPQTPAVKIRKDGSRQHTEEKVFPGYVLVRMMMDDDTWQVVRNTSHVINFVGSEQKRGSSKGRGHVHPIPLSASEVERIFKQTSEQEAVVKIDMATGDKIMVLSGPFKDFEGEVIEVSPERSKLKALLSIFGRDTPVELEFNQVEKQS
>NZ_CP040094.1|WP_012412092.1|1393692_1394118_+|50S-ribosomal-protein-L11
MAKKVVAVIKLALNAGKANPAPPVGPALGQHGVNIMMFCKEYNAKTADQAGMVIPVEISVFEDRSFTFVLKTPPASVLIRKAAKVEKGSNEPNKKKVGSITKAQLQEIAQTKLPDLNANDIDAAMKIVAGTAKNMGITVKD
>NZ_CP040094.1|WP_012412093.1|1394250_1394964_+|50S-ribosomal-protein-L1
MAKISRRLQTLQAKVEDKDYHPLEALALLKDTATAKFVEAAEAHIRLGIDPKYTDQQLRTTVALPKGTGQIVRVAVIARGEKVNEASNAGADIVGSEELIDEIQKGRMDFDKLIATPDVMPQVAKLGKLLGPRGLMPSPKGGTVTFDIASAIAEFKAGKLEFRADRTGIVHVMFGKTTFSPEDLLVNLKALQETIDRNRPSGAKGRYWRTFYVSATMGPSIKIDVTALRDLKLSEVG
>NZ_CP040094.1|WP_174708932.1|1395298_1395913_+|50S-ribosomal-protein-L10
MGRTLENKKEIVADLKETLSESTLALVIDYQGLTVSEITDLRRRLRPSGTVCKVTKNTLMGIAIEGDEKWQPLSELLNGSSAFLLVKDDFSSAIKAYQEFQKVTKKTELRGGVLEGRLLKEPDVKVLGDLPSKEQLIAQIAGAINALATKIAVGINEVPGSLARALKAVSDQEQSGGSTETVAVQDSSAETATVADSSTEPAAE
>NZ_CP040094.1|WP_012412095.1|1396005_1396398_+|50S-ribosomal-protein-L7/L12
MSAATDQILEQLKTLSLLEASELVKQIEEAFGVSAAAPVGGMMMMAGPGGAAPAEEAVEQTEFEVILDSVPADKKIAVLKIVRELTGLGLKEAKDLVEAAPKAVKEGIAKDAAEDAKKRIEEAGGKVTIK
>NZ_CP040094.1|WP_163932347.1|1396636_1396966_-|DUF2973-domain-containing-protein
MLHLLYILAFTILAFMAVGNLIRNLIMFSFDRERTYPTNSSPINNQGKYGYYSSKKQFVPHPELLDSAGNLIKEPLLVMRSINVEDARQHLDALYEASPGRKSENSEEA
>NZ_CP040094.1|WP_012412097.1|1397266_1397584_-|DUF2605-domain-containing-protein
MSDSNLPGTELLKTVLEPLLEDFQHWFTRSRHLLETEQLSFMSDQEQSDLLLRVKQAQEELSTAKMLFAATDKQVGIDMATLMPWHQLVTECWNVAMRFRQEREV

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Crispr_ID: NZ_CP040094_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040094_6

1738066-1738158

Orphan

N:A

Consensus_repeat	Method
ATTGCCTGAAGAAGAAAATGAATTGCAAATGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040094_6

>merge|NZ_CP040094|6|1738066-1738158|CRISPRCasFinder
ATTGCCTGAAGAAGAAAATGAATTGCAAATGAAACTATCAAGCAATATCCAGCGCGAAGAATTGCCTGAAGAAGAAGATGAATTGCAAATGAA

>NZ_CP040094|6|5|1738066-1738158|CRISPRCasFinder
ATTGCCTGAAGAAGAAAATGAATTGCAAATGAA	ACTATCAAGCAATATCCAGCGCGAAGA
ATTGCCTGAAGAAGAAGATGAATTGCAAATGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040094.1\|WP_174709145.1\|1727980_1728712_-\|DNA-repair-protein-RadC	unknown	unknown	gnl\|CDD\|178801
NZ_CP040094.1\|WP_174713553.1\|1729831_1730770_-\|phosphoribulokinase	unknown	unknown	gnl\|CDD\|180975
NZ_CP040094.1\|WP_174709159.1\|1752863_1753268_-\|response-regulator	unknown	unknown	gnl\|CDD\|381100
NZ_CP040094.1\|WP_174709143.1\|1725370_1725928_+\|DUF3124-domain-containing-protein	unknown	unknown	gnl\|CDD\|378638
NZ_CP040094.1\|WP_174709152.1\|1739811_1741971_+\|DNA-helicase-RecQ	unknown	unknown	gnl\|CDD\|223588
NZ_CP040094.1\|WP_174709148.1\|1731208_1733200_-\|alpha-amylase	unknown	unknown	gnl\|CDD\|200488
NZ_CP040094.1\|WP_174709158.1\|1751743_1752631_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP040094.1\|WP_174709146.1\|1729298_1729529_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174709154.1\|1744758_1746171_-\|TolC-family-protein	unknown	unknown	gnl\|CDD\|224455
NZ_CP040094.1\|WP_174709153.1\|1742189_1744451_+\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|223551
NZ_CP040094.1\|WP_174709149.1\|1733332_1733995_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|366722
NZ_CP040094.1\|WP_174709151.1\|1735735_1737298_+\|AAA-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|373105
NZ_CP040094.1\|WP_174709150.1\|1734216_1735602_+\|AAA-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|373105
NZ_CP040094.1\|WP_174709144.1\|1726182_1727736_-\|sodium:proton-antiporter	unknown	unknown	gnl\|CDD\|223104
NZ_CP040094.1\|WP_174713556.1\|1747017_1748289_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|182528
NZ_CP040094.1\|WP_174709156.1\|1750136_1750691_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174709147.1\|1729525_1729789_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174709155.1\|1748458_1750036_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|235136
NZ_CP040094.1\|WP_174713555.1\|1746287_1746950_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213222
NZ_CP040094.1\|WP_174709157.1\|1750959_1751598_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102

Protein	Function_ID	Function_description	E-value
NZ_CP040094.1\|WP_174709145.1\|1727980_1728712_-\|DNA-repair-protein-RadC	gnl\|CDD\|178801	PRK00024, PRK00024, DNA repair protein RadC.	3.71661e-104
NZ_CP040094.1\|WP_174713553.1\|1729831_1730770_-\|phosphoribulokinase	gnl\|CDD\|180975	PRK07429, PRK07429, phosphoribulokinase; Provisional.	0
NZ_CP040094.1\|WP_174709159.1\|1752863_1753268_-\|response-regulator	gnl\|CDD\|381100	cd17548, REC_DivK-like, phosphoacceptor receiver (REC) domain of DivK and similar proteins. Caulobacter crescentus DivK is an essential response regulator that is involved in the complex phosphorelay pathways controlling both cell division and motility. It localizes cell cycle regulators to specific poles of the cell during division. DivK contains a stand-alone REC domain. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	1.02986e-33
NZ_CP040094.1\|WP_174709143.1\|1725370_1725928_+\|DUF3124-domain-containing-protein	gnl\|CDD\|378638	pfam11322, DUF3124, Protein of unknown function (DUF3124). This bacterial family of proteins has no known function.	2.37369e-78
NZ_CP040094.1\|WP_174709152.1\|1739811_1741971_+\|DNA-helicase-RecQ	gnl\|CDD\|223588	COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair].	0
NZ_CP040094.1\|WP_174709148.1\|1731208_1733200_-\|alpha-amylase	gnl\|CDD\|200488	cd11350, AmyAc_4, Alpha amylase catalytic domain found in an uncharacterized protein family. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	7.23838e-40
NZ_CP040094.1\|WP_174709158.1\|1751743_1752631_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	2.94027e-17
NZ_CP040094.1\|WP_174709154.1\|1744758_1746171_-\|TolC-family-protein	gnl\|CDD\|224455	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion].	3.37793e-57
NZ_CP040094.1\|WP_174709153.1\|1742189_1744451_+\|cation:proton-antiporter	gnl\|CDD\|223551	COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism].	8.77858e-67
NZ_CP040094.1\|WP_174709149.1\|1733332_1733995_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|366722	pfam01596, Methyltransf_3, O-methyltransferase. Members of this family are O-methyltransferases. The family includes catechol o-methyltransferase, caffeoyl-CoA O-methyltransferase and a family of bacterial O-methyltransferases that may be involved in antibiotic production.	1.48379e-82
NZ_CP040094.1\|WP_174709151.1\|1735735_1737298_+\|AAA-like-domain-containing-protein	gnl\|CDD\|373105	pfam14516, AAA_35, AAA-like domain. This family of proteins are part of the AAA superfamily.	2.31072e-16
NZ_CP040094.1\|WP_174709150.1\|1734216_1735602_+\|AAA-like-domain-containing-protein	gnl\|CDD\|373105	pfam14516, AAA_35, AAA-like domain. This family of proteins are part of the AAA superfamily.	0
NZ_CP040094.1\|WP_174709144.1\|1726182_1727736_-\|sodium:proton-antiporter	gnl\|CDD\|223104	COG0025, NhaP, NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism].	7.23147e-80
NZ_CP040094.1\|WP_174713556.1\|1747017_1748289_-\|ABC-transporter-permease	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	6.59609e-68
NZ_CP040094.1\|WP_174709155.1\|1748458_1750036_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|235136	PRK03598, PRK03598, putative efflux pump membrane fusion protein; Provisional.	2.26625e-44
NZ_CP040094.1\|WP_174713555.1\|1746287_1746950_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213222	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein. This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.	1.21531e-117
NZ_CP040094.1\|WP_174709157.1\|1750959_1751598_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	4.39641e-13

>NZ_CP040094.1|WP_174709151.1|1735735_1737298_+|AAA-like-domain-containing-protein
MNNYRYQVGGTLTSDAPSYVERKADVQLYEALKQGEFCYILSSRQMGKSSLMVKTKHRLQQEGFKCVTIDMTNIGCENITPEQWYKGVVGDLWLGFKLLGKVNLKTWWQEKNDISLAQKLSRFISEILLVQFPNERLFIFIDEIDSILGLDFSVDDFFSLIRFCYNQRAIDPEYERITFAIFGVATPSDLILYQNHITPFNFGKAIRVNGFTFEEAQPLSLGLDLKDNHPQKVLKEVLAWTKGQPFLTQKLCRLLVSLSQDDVGRKLKIPPGTEEFWIENVVQSHIIDQWESQDEPEHLRTIRDRILRNEQIAARLLGIYQQILQGVEVPADDSREQVELLLSGLVVKKQGFLQIKNRIYEEVFNLEWVGKKLAYLRPYYETFNAWIASKENDESRLLRGQALIDAQTWAHGKSLSNLDYRFLAASEELDRREMQQSLEAERAKEVEARLAEQQKRLAQQKKTSTIVTLLLAGMTIKLVISIVWGVSLLRKIDALESQLKCNQIGHHGKEITANSRLDGC
>NZ_CP040094.1|WP_174709150.1|1734216_1735602_+|AAA-like-domain-containing-protein
MSVEDILQAVETILQDKPLASIQCFVLSQSWLGKTYGEMAEESGYRNNYIKEVGSELWQDLSIALGKKITKKNLHLALKKYLQEKIGDRDNQSQQEFNEKSNLEMVSPDSFSASKIEFPSGPVPLGSPLYINRPPLEELVCNEILYPGCLIRIKAPRKTGKSSLLNRMIAYAREQGYQIVYLDFQEADQDVFASLDKFLRWFCVNVSRQLNLLPCLDDFWDTEMGSKVSCKIYFEAYLLQYIDNSPLVLALNEVHRVFEHPNIAQDFLPMLRFWHEQAKQDQIWQKLRMVVVHTTEIYIPLKLNQSPFNVGITITLPPFTLNQVQNLALRYGLNCAADSEGAKRLVPLQAMVGGHPYLVSLALYHLCQEEMTLETLLETASTPVGIYSQHLRELLSLLQKDPKLMSAMQQVIATDEKVELDAIAAYKLESMGLVKLNGNQAHVMCELYRLYFSQQLRKHSG
>NZ_CP040094.1|WP_174709149.1|1733332_1733995_+|class-I-SAM-dependent-methyltransferase
MTTQTLGLEQNLYDYLLSVSLREPEILTQLRQETAQHPVGRMQIAPEQGQFLALLVQLLGAKKTLEVGVFTGYSSLVVALALPSDGKVVACDVSEEFTTIARRYWQQAGVADKIQLHIAPALETLDGLLATGEAESFDFAFIDADKSNYDSYYERSLQLVRRGGLIAIDNVLWSGRVADPQVQDNRTKRIRAFNQKLHQDQRVSLSLVAIADGLTLALKK
>NZ_CP040094.1|WP_174709148.1|1731208_1733200_-|alpha-amylase
MPIDLLSRKKTHFVLWRVGASELAPTLYIGNTTPESPDRLAQFREIPLRQSAEFPELWEVSAKESGLIEGQVYFYWFKVRNSDPYAAANANQILYCTDPTATTVDRRFPAPTPSESGGVTSSDPASVVLYQNGMLIPCDPEGQTVNWEGDAPLETLPTNNQLVIYELPTRWTKINSNGLVEEGVGTFRDVLALLIPEAIAPTFPMITALKNRAHLGELGINALELLPPEDSDDNLNWGYGTANYFAADFDLGRPDSQSAPTASTDLANLIKVCHQQGLRFFVDVVMAFSRNNPYHNVNFLEFYIKWASGDPEQGSRDGFGGDLFKYNYWVEGYNPTTGQKSWLVPAREYLKAHIAHWLEYYRVDGLRLDSVNNIANYDFLQEFKDFARTLWDKRGGSGNRFLVVGEELSVPLSLIQQNRLDGLWNEKFKQIIRQVILGKNAWDEPSFEWSIRKLIDCRNLGFTDGSQAVNYITSHDVGGYGNERFFSYLLSNGIADTEPRIKLAFVSLLTSVGIPMILAGDEFADQQDLPPTDDHKQIDPVNYSRVKDEWRQRIFQYVARLVRLRKTSHALAVNDTKFIHVDFNDGKRVLVWQRGNKADQLVVVVANFSDYGTPPASEYRVPNWPATPVGKQWKEITQERIVPSEWVGREGIFPWEAKVYALV
>NZ_CP040094.1|WP_174713553.1|1729831_1730770_-|phosphoribulokinase
MSRPIILGIVGDSAAGKTTLTRGIAQALGPENVTIICTDDYHRYDRQQRAEIGITALHPDCNHLDIMQQHLSLLRTGQPILKPVYSHKTGTFEAPHYIKPSKFVIIEGLLGYSTRAARDSYDVKVYLAPPEELRAKWKVKRDTQKRGYTPEQVLAELDKREPDSAQFIRPQRQWSDIVISFYPPTDEDDESNGHLNVRLVLRPTIPHPDFTVITNSSYGNSDSAIRLGLDRDMCKPVDVLEVDGHATLEQVNKLEHIICSDMPHLRSICDRESNPELGKIAGTTGETLQSYPLALTQLIITYHMLKATQIYQ
>NZ_CP040094.1|WP_174709147.1|1729525_1729789_+|hypothetical-protein
MKSAVLPSFWFEYGKLSDDIRQSARKSYRLWIQNPFHPSLHFKCINSQEGIWSVRVTRGYRVLGVLEGDIVTWFWIGSHDDYERFFS
>NZ_CP040094.1|WP_174709146.1|1729298_1729529_+|hypothetical-protein
MSSAAIATVLKMMESLSVEAQDRVAEHLREYINDLQDEIQWNESFERTQQKLVAAAQRAKQEIAEGQAKALDYDQL
>NZ_CP040094.1|WP_174709145.1|1727980_1728712_-|DNA-repair-protein-RadC
MTYCLRIADLPTNERPRERLMTHGAKILATAELIAILLGTGQGPGKLSAVGLGQYILSELGKHQRDPLATLREVSPAELMQISGVGPAKATSILAAIELGKRAFQCRPNDGTLIDSPLAAAATLSQDLMWQTQERFAVVLLDVKNRLLGTQVITIGTATETLASPRDIFREVIRQGATRAIVAHNHPSGNLEPSQEDIELTHQLLAGAQLLGIPVLDHLILGNGNHQSLREITTLWDEHPQGD
>NZ_CP040094.1|WP_174709144.1|1726182_1727736_-|sodium:proton-antiporter
MDVTELVKVSIILLLLATGVALLSRRLGIPYVTGLVLAGLPITELLSRPIGLNPILVLELFLPILLFEAGINTDVSRLRSTFKPIALLAGPGAVLSSAIIAVLLKFGLGLSWIPALFVGVMLANTDTVSMIAVFKEIPVPSRLSTIVEGETLFNDAAALVMFNLIVQVYSTGSLTFIEGIQQLLVISLGGCVVGLVLGYLSIPIFARLDDALSSLLLTVAVALGTFQVGQFLGVSGAVAVVVAGLIFGNLGLSQNTSASSRITLLSFWEYASFTVNTFIFLLIGVEIDLITLWRTLPAILFVVLAYQIGRVLTVYPLLAGIRLIDRPIPLRWQHLLFLGNIKGSLSMALALSLPTTLPGRDVLIALVFGSVLVSLVGQGLSLPWVVKRLKLSKFSEAQQQVEELQAQLMTGKAAQDELDSLLKSGVLPKAVYEEMRSAYQVRIAGAEKILRELYNRRSDDVDGKSNSSGKLDAIRRRLLLAEKGALNEAMRKRILSEEIVRGRIQNLDEQLLKLDDD
>NZ_CP040094.1|WP_174709143.1|1725370_1725928_+|DUF3124-domain-containing-protein
MKPYLYILAIAVIFLASCQSTNIPPKSQPDAIQATPVQKVVTLDKNFKIASGQTVYVPVYSHIYHHNKQEIFELAVTLSVRNTDLTNPIVITAVRYYNSEGKLVKEYLEQPIQLDALASTDFFINRNDTSGGLGANFIVEWVAQTEISEPIVEAVMIGTDFQQGISFISPGRVIKNQNNDKRSPS
>NZ_CP040094.1|WP_174709152.1|1739811_1741971_+|DNA-helicase-RecQ
MLQYPNLEQALKYHFGYDRFRPGQRQIIEDALQNRDLLIVMPTGGGKSLCFQLPALIKKGLTVVVSPLIALMQDQVEGLRNNNINATFLNSSLNPYKVRSREEAILSGKVRLLYVAPERLLSERFLPFLDLVKEKIGIAAFAIDEAHCVSEWGHDFRPEYRQMKSLRKRYPDVPTLALTATATDRVRADIIQQLGLKQPSIHIASFNRQNLYYEVRSKTKSAYAELLELIRENECSAIIYCLTRKKVDELTFKLQNDKISALSYHAGLSDEERSSNQTRFIRDDVRVMVATIAFGMGINKPDVRLVIHFDLPRNLESYYQESGRAGRDSEPSRCTLFFSFSDIKTIEWSIDQKPDPQEQLIAKQQLRQVIDYAQGTVCRRTIQLGYFGERFDGNCGNCDNCRYPKPMQDWTIEAMKFLSCVARCKERFGMLHIIDVLRGAKSQKIIQNEHDQLSTYGIGKDKSIDEWRMLARSLLHQGLVEQTSDGYSVLKLNPLSWEVMRRQRTVSLAVPVAQKITWEEGSEKAAEAEILMQRLRSLRKQLADEQSVPPYVVFQDSTLKVMAQVQPKTLTEFGKLSGVGSHKLSQYGDKFLTEIRAYRQEKGLIDPPQVKFTPSVSLPSDTEIVTFQLHKQGLSVDEIAKKRNIRPTTIIRHLTDLIEKNQPVDLNQLVSLEHQQKIWQVLEVLGDISLTPIREQLGESYSFDEIRLVRGKWRRENRK
>NZ_CP040094.1|WP_174709153.1|1742189_1744451_+|cation:proton-antiporter
MQNLSLMLVPVLAAQKAAGDGLIKPLGHHELLLVLVQLSLLLLVARGLGELMRRINLPPVVGELLAGVLLGPSIFGLLLPDLQAHIFPKSQEQSNLLSVISWLGVLFLLIVTGLETDLKLILRKGKTALLISLGGIIVPFITGFGLGWLLPDSFLANPEKRLVFSLFIATAMSISAVPVIAKVLMDLNLIRRDIGQVTLAAGMTDDTIGWILLSVVSGLASSGKFDFGTIFHSVSAAILFLAIAFTIGRTIVDQILRWVDDYVGGISASISAVLILSLSAAALTHALGLEAALGAFVLGILAGQSRRFSNEAGHLLEVFTAAFLAPIFFAGAGLKVDLLTLLVPQTLLFGLIVLAVACVGKFTGAYLGSRVGGLSHWEGLAMGSGMNARGAMEIVVATIGLSLGVLNPQMYSIIVMVAIVTSLMAPPLLRWTLSKVVMSEEEAQRLEQEEQDSRSFIKQIHRILIPTSGGPNIQLAAQLVGYMAHQNSIEVTSLYALSDKQPQKKGRRAATQVKDTAAEEALASVAEEMQLPDDTTLQTKMESGRSKAEVILNEANKNYDLIVLGASEQMRPQKTLFNLLVDRVVQEAPCATMVVKSHLPQAKGEICKIAQQKLTKILVPTVGTEYSKNAVEMASTIAAQTGALVMIVNVINLPQVEYILYEQRSLTPVKEIAHDLLEQQAAIGRNLGADVKTYILQGTSPEREILKFAQTQEVDLIILGSNIRMVTGRVFFGHRVDAILSKAHCPVAVITVP
>NZ_CP040094.1|WP_174709154.1|1744758_1746171_-|TolC-family-protein
MNFSLLFVHSTWVGVAFAILFPALASAVTPPKPQNNSSTVQVPDYLNPNPNPLQFPTKPQEVRIQGTVPITLAQALELARRNNRDLQVAILQLERSRSALRESQAALFPTLGINSNLTNSGNGFTNNSSQSSTSFNGSAQLNYNLYTSGNRQGAIQAAEEQLRVDELNVESQSLIIRLNATTQYYDLQQADEQVRINRAAVENAQASLRDTQAREQAGVGTRFDVLQAQVNLANAQQQLTNAISQQQIARRQLTTTLSLSQSVDISTADPVQLAGLWPQTVEQSIVQAFQNRPELQQQLAQRNISEQQRRQALSQLGPQISLVGNYNLLDRYDDGVSITDGYSVGLQGNLTLFDGGAARARAAQSKSNIAIAESQFASQRDQIRFDVEQFYSQLQSNLNNVQTSSVALNQAREALNLARLRFQAGVGTQTEVISAENDLTRAEGNRVTAILDYNRALANLQRSVTSRASR
>NZ_CP040094.1|WP_174713555.1|1746287_1746950_-|ABC-transporter-ATP-binding-protein
MIWMESITKTYYLGEVSVPILKGIELSIEEGEYVSIMGASGSGKSTLMNILGCLDRPTTGDYIFEGRNLTTFDDDELAYIRNQRIGFVFQQFNLLARATALENVMLPMVYANLPKPKRRKRALEALEKVGLQGRIANRPSQLSGGQQQRVAIARALVNRPALVLADEPTGALDTETSHEVMNLLTELNDQGITIVIVTHEPDIAAQTKRIIRVQDGLIVG
>NZ_CP040094.1|WP_174713556.1|1747017_1748289_-|ABC-transporter-permease
MFKGFYKAKKTRTVPLLEILTMAAETLWSNKLRTGLTMLGVIIGISSVIAITSVGQGVQKGVEQQIQALGTDVIQILAGAARSGNVRQGVGSSSTLTWEDAKAIATQAPSAQMVSAYLQRTAQVVYAGQNTSTTIYGTDLNYPEVRNTHPQQGRYFTQEELDTVAQVAILGPTVQSTLFGQGVNPIGEKIRIQGEAYQVIGVMEPKGSQGPMDRDDQVFIPLTSMSKRLVGNNALVGVSVNGILVKGANQEELEAAQFQVTNLLRLRHNIYPPQADDFRLTNQADIVSTFTSVVGLFTVMVVAIAGISLVVGGIGIANIMLVSVVERTREIGIRKAVGATNSAILNQFLAEAIVISIVGGGIGMATGILLAFIASSIFKFPFIISFLSIIAGFVLSLSVGLVAGVIPARNASKLDPINALRSD
>NZ_CP040094.1|WP_174709155.1|1748458_1750036_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MKIDTPNTVDSSVLVPEVKKKKGKRNWLSWLIAFCLLGGIGYAVYYQVAVVSQQQASRRVLTRPVQRQSLTITVSANGTVKPERSINLSPKNSGILKTLLAKEGDLVKQGQIVAYMDDSNLRGQLTSAQGQLAQAEANLQKAIAGNRPQDIAQAQGVLDEAQANLQKVQAGNRSQDIAQAQARLQSAQATLRQAEDDFVRNQQLYNAGGISLQTLNQNRATRDSAQASVNEAQQALGLQKAGSRPEDIEQAQAVVKQRQQALALLKAGTRQEDISAARAQVTSARGSLQNIQAEINDTIIRAPFDGVVTKKFADPGAFVTPTTASSEVASSSSSSILSLASTNEVVANLAETNISKISLGQKVSITADAYPGKTFEGKVSQIAAQAIVEQNVTSFEVRVSLSDPQRLLRSGMNAEVDFQVGQVENVLVVPTASVVRQQNTTGVYVAGANNKPVFTRIETGVTANNFTEVKSGLTGDERVLLSFPPGSRPQSTPRGGVFPGIGGGGGGGGGRGAGGGGGRSGGGSP
>NZ_CP040094.1|WP_174709156.1|1750136_1750691_-|hypothetical-protein
MLKPNRVSIVLAAAALIIVPTLLTAPASAQTKVYVVGDRDPNFDRDGRSYPGEVRNPRDRDNNWNRDGRNYPGEVRNSRDRDNWNRDGRPYPGEVRNSRDRDNWNRDNQSYNRVVRLGNGDIRYPNGQIIPSRSIVRLRNQGYFRLPNGDILLPSQEIVPAGRLVRVRDDYFRLPSGLVLQINL
>NZ_CP040094.1|WP_174709157.1|1750959_1751598_-|TetR/AcrR-family-transcriptional-regulator
MARVPKITNQQILEAARQVFLQQGFGASTLEIAQQAGISEASIFKRFSTKEELFFTAMGIPEKPVWVSELESLSGKGNLKENLINICLQITEFYREVLPQIVMLRSRGNAFPELGGKEPRPIQDFKALTAFLEYEINQNRLRPCDPQTVAHILLGSLMNYVFLEQISSQKSIKEDDFTIKPYLKSEDRGTEVSAFIQNFVDIIWQGIAPIQD
>NZ_CP040094.1|WP_174709158.1|1751743_1752631_+|tetratricopeptide-repeat-protein
MPKHVRLISFLMVCSLWSMPKAANAQALIPHTLQLDGTKLEKQGLSLAQEAAQLAQFQQVELALPRARLASQLAPKNDKVWLLLGGLQLQTKEFDGAIASFKKAQSINPKNGDILFALGSANFQQKNYQAAVVNYQEGLKLKPNDPEGLFDLGNAYYLLGKLPDAIAQYDKAVSQDKKFWPALNNIGLINYEQGNTSEAIKRWQSAITLDKQAAEPLLALAVALYTKGDSQQGLTMGEAALRIDQRYANLNFLKENLWGDRLLSDTKKFLELPRIQAALQQPENSSSAPGKQPTQ
>NZ_CP040094.1|WP_174709159.1|1752863_1753268_-|response-regulator
MKTVLIVEDDLINARVFSKILSKRGGLGVKHTENVEEVIKIAQSGEADLILMDVSLSRSVYQGKSVDGIKITQMLKSDPKTANLPVILVTAHAMEGDRENFLKQSGADGYISKPVVDHQQFVDQILALLPTDGQ

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Crispr_ID: NZ_CP040094_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040094_7

1933822-1933929

Orphan

N:A

Consensus_repeat	Method
AACAGCTTGAGCATTAGCGATCGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040094_7

>merge|NZ_CP040094|7|1933822-1933929|CRISPRCasFinder
AACAGCTTGAGCATTAGCGATCGCAGCTTGATCGCCTTTGACAACTGCGCCGGCATTAGTCAGCGCCACGCGATCGCTTTTCAAAACAGCTTGGGCATTAGCGATCGC

>NZ_CP040094|7|6|1933822-1933929|CRISPRCasFinder
AACAGCTTGAGCATTAGCGATCGC	AGCTTGATCGCCTTTGACAACTGCGCCGGCATTAGTCAGCGCCACGCGATCGCTTTTCAA
AACAGCTTGGGCATTAGCGATCGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040094.1\|WP_174709245.1\|1921672_1922398_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NZ_CP040094.1\|WP_174709249.1\|1925464_1926013_+\|NUDIX-hydrolase	unknown	unknown	gnl\|CDD\|239516
NZ_CP040094.1\|WP_174709251.1\|1929385_1929766_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174713562.1\|1941454_1941829_+\|transposase	unknown	unknown	gnl\|CDD\|379129
NZ_CP040094.1\|WP_174709255.1\|1935975_1936884_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174709084.1\|1943573_1944338_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174709257.1\|1938324_1938696_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174709254.1\|1934875_1935847_-\|RNA-polymerase-sigma-factor,-RpoD/SigA-family	unknown	unknown	gnl\|CDD\|274382
NZ_CP040094.1\|WP_174709252.1\|1929955_1933078_-\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|182501
NZ_CP040094.1\|WP_174709083.1\|1942715_1943396_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174709247.1\|1923259_1924306_-\|DUF1611-domain-containing-protein	unknown	unknown	gnl\|CDD\|225902
NZ_CP040094.1\|WP_174709244.1\|1919774_1921406_-\|M48-family-metalloprotease	unknown	unknown	gnl\|CDD\|320692
NZ_CP040094.1\|WP_174709258.1\|1938970_1940230_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NZ_CP040094.1\|WP_174709256.1\|1936929_1938210_-\|S41-family-peptidase	unknown	unknown	gnl\|CDD\|223864
NZ_CP040094.1\|WP_174709260.1\|1942208_1942361_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174709243.1\|1918911_1919694_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372967
NZ_CP040094.1\|WP_174709246.1\|1922575_1922746_-\|ssl1498-family-light-harvesting-like-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174709250.1\|1926293_1929380_-\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|182589
NZ_CP040094.1\|WP_174709248.1\|1924289_1925342_-\|dipeptide-epimerase	unknown	unknown	gnl\|CDD\|239435
NZ_CP040094.1\|WP_174709259.1\|1940233_1940881_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107

Protein	Function_ID	Function_description	E-value
NZ_CP040094.1\|WP_174709245.1\|1921672_1922398_-\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	0.00017255
NZ_CP040094.1\|WP_174709249.1\|1925464_1926013_+\|NUDIX-hydrolase	gnl\|CDD\|239516	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirement for metal ions. NUDT5 forms a homodimer.	3.57712e-46
NZ_CP040094.1\|WP_174713562.1\|1941454_1941829_+\|transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	1.231e-14
NZ_CP040094.1\|WP_174709254.1\|1934875_1935847_-\|RNA-polymerase-sigma-factor,-RpoD/SigA-family	gnl\|CDD\|274382	TIGR02997, RNA_polymerase_sigma_subunit_sigma70/sigma32, RNA polymerase sigma factor, cyanobacterial RpoD-like family. This family includes a number of closely related sigma-70 (TIGR02937) factors in the cyanobacteria. All appear most closely related to the essential sigma-70 factor RpoD, and some score above trusted to the RpoD C-terminal domain model (TIGR02393).	1.19452e-147
NZ_CP040094.1\|WP_174709252.1\|1929955_1933078_-\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|182501	PRK10503, PRK10503, MdtB/MuxB family multidrug efflux RND transporter permease subunit.	0
NZ_CP040094.1\|WP_174709247.1\|1923259_1924306_-\|DUF1611-domain-containing-protein	gnl\|CDD\|225902	COG3367, COG3367, Uncharacterized conserved protein [Function unknown].	1.27104e-128
NZ_CP040094.1\|WP_174709244.1\|1919774_1921406_-\|M48-family-metalloprotease	gnl\|CDD\|320692	cd07333, M48C_bepA_like, Peptidase M48C Ste24p bepA-like, integral membrane protein. This family contains peptidase M48C Ste24p protease bepA (formerly yfgC)-like proteins considered to be putative metallopeptidases, containing a zinc-binding motif, HEXXH, and a COOH-terminal ER retrieval signal (KKXX). They proteolytically remove the C-terminal three residues of farnesylated proteins. They are integral membrane proteins associated with the endoplasmic reticulum and golgi, binding one zinc ion per subunit. In eukaryotes, Ste24p is required for the first NH2-terminal proteolytic processing event within the a-factor precursor, which takes place after COOH-terminal CAAX modification (C is cysteine; A is usually aliphatic; X is one of several amino acids) is complete. Mutation studies have shown that the HEXXH protease motif, which is extracellular but adjacent to a transmembrane domain and therefore close to the membrane surface, is critical for Ste24p activity. Several members of this family also contain tetratricopeptide (TPR) repeat motifs, which are involved in a variety of functions including protein-protein interactions. BepA has been shown to possess protease activity and is responsible for the degradation of incorrectly folded LptD, an essential outer-membrane protein (OMP) involved in OM transport and assembly of lipopolysaccharide. Overexpression of the bepA protease causes abnormal biofilm architecture.	6.54978e-64
NZ_CP040094.1\|WP_174709248.1\|1924289_1925342_-\|dipeptide-epimerase	gnl\|CDD\|239435	cd03319, L-Ala-DL-Glu_epimerase, L-Ala-D/L-Glu epimerase catalyzes the epimerization of L-Ala-D/L-Glu and other dipeptides. The genomic context and the substrate specificity of characterized members of this family from E.coli and B.subtilis indicates a possible role in the metabolism of the murein peptide of peptidoglycan, of which L-Ala-D-Glu is a component. L-Ala-D/L-Glu epimerase is a member of the enolase-superfamily, which is characterized by the presence of an enolate anion intermediate which is generated by abstraction of the alpha-proton of the carboxylate substrate by an active site residue and is stabilized by coordination to the essential Mg2+ ion.	1.2712e-124
NZ_CP040094.1\|WP_174709256.1\|1936929_1938210_-\|S41-family-peptidase	gnl\|CDD\|223864	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane].	7.54214e-129
NZ_CP040094.1\|WP_174709243.1\|1918911_1919694_-\|hypothetical-protein	gnl\|CDD\|372967	pfam14218, COP23, Circadian oscillating protein COP23. This family includes the circadian oscillating protein COP23 from Cyanothece sp. (strain PCC 8801). The levels of this peripheral membrane protein display a circadian oscillation.	1.20685e-36
NZ_CP040094.1\|WP_174709250.1\|1926293_1929380_-\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|182589	PRK10614, PRK10614, multidrug efflux system subunit MdtC; Provisional.	0
NZ_CP040094.1\|WP_174709258.1\|1938970_1940230_+\|sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	3.69555e-50
NZ_CP040094.1\|WP_174709259.1\|1940233_1940881_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	5.27085e-80

>NZ_CP040094.1|WP_174709252.1|1929955_1933078_-|efflux-RND-transporter-permease-subunit
MNLSEPFIRRPIMTTLVMMAILIFGFMSYRLLPISDLPSVDYPTIQVSASRPGASPETMAASVARPLEKQFSSIAGLDSLNSTSTLGQTQITLQFNLSRNIDDAAQDVEAAISGASGQIANDLPNPPTYSKVNPADQPILYLYLDSPTLPLSQVDNYAETYLAQKLSTINGVAQVAVYGSQKYAARIQLDPQQLAARQIGLDQVATAIQQGNVNLPTGSLSGNHKNFTVQTNGQLEDAAAYRQLIVSYKDGMPIYLNQLGRIIDSVENDKVASWYNNTRAIILTIQRQPGTNTVQVVDTIKNLLPKLREQIPASVEIGILYDASQSIRDSVDDVRFTLILTIALVILVIFIFLRNLSATVIPSLALPVSLIGTFAVMYLLHYSLDNLSLMALTLSVGFVVDDAIVMLENIVRHMEMGERPLEAALNGSREIGFTILSMTLSLVAVFIPMLFMSEVLGRLFHEFAVTIAVAILVSGFVSLTLTPMLCSRFLRPVDHANQSRLYQASEYVFDRFLGLYDWSLKKVLKYHRTTMILSVFLLAVTVGLLVIVPKGFIPSEDTGQITGITQAAEDASFDNLVQHQQTVANLIRQDPNVDAVNSNIGAGASASGGGAAVAANSGSLFIRLKPRSQRQLGADEIIQELRTKLATVPGIQVFLQNPPAIPIGAQQSTGLYQVALQSSDVKPLQEYVPQLVLKMKEMTELQDVNSDLQFASQIQIDIDRDKASTYGITAEQIENTLRSAYGSYQVSTIYAATNEYQVILELAPQYQEDINALLTLYINSSTGVAVPLKTFAKLSQGVSPLMVNHNGRMNAATISFNLAPSVSLGNANEEIEKLINQVIPVSISTSFQGASQVFQSSLPSLGLLLAIAILVIYLILGVLYEDFIHPITILSGLPSAGFGALLTLIIFHVELNVYSFIGIILLVGIVKKNGIMMVDFAIVAQREELKKPSEAIYQACLVRFRPIMMTTMAALMGTLPIAIGFGAGSESRRPLGIAVVGGLVFSQILTLYLTPVFYIYMESWRKKLNQVKFRRVFSFTGERS
>NZ_CP040094.1|WP_174709251.1|1929385_1929766_+|hypothetical-protein
MLSQKCDEDALAAALPLGIAKNNAIRLVLRLNSFSKSIFLNVRVACRRHTAKNALAQRLVREGRKGREGRFIEFGVSFIEFGVSFIEFGVLFIEFGVSFIEFGVLFIEFGVLFIEFGQPFIIFVQF
>NZ_CP040094.1|WP_174709250.1|1926293_1929380_-|efflux-RND-transporter-permease-subunit
MNLSEPFIRRPVMTTLVMIGILIFGLMSYFLLPISALPNVEYPFISVSASLPGATPETMASSVAAPLERQFTEIAGLNSFNSTSSTGSTNISLQFDFSRRVEDAAKDVQAAISAAAGQLPAGMPHPPTYRKVNPSVSPVLFLYMYSETQPISTVDEYAEVTVGQPISMIDGVAQVQVFGQQQYAVRVQLDPRELASRGIGLNQVKTAIQQGNVNLPTGSLSGTYKSYTIQANGQLTDAASYRQLIVSYKNGATVRLQDLGQVIDSEQNVKVSNLYSDRKVTNRHSVVLAVQPQPGANTVNIVDAIQKLLPTLREQVPKSIEMGIMYDRSQTIRASVNDVKFTLVLSVCLVVLVIFLFLRDTTATLIPSLALPVAIIGTFAVMYLSGFSLDNLSLMALTLSVGFVVDDAIVVLENIVRYREMGESPLNAALKGSREISFTILSMTLSLVAVFIPIMFMSGIIGKLFHEFAVTIAVAILVSGFVSLSLTPMLCSRFLSSSHQQKPNLVYRVSERAFDLLLQGYDWTLKPILKYRLMTLIGSGILLVMTVYLFVIVPKGFIPTEDTGQLMGNTKGAQDISFDDMRHHQQKVVDIIRQDPNIEAVDSIVGASGPNASVNSGRITIRLKPRSQRQLSADQIIQELTPKLRRVVGVKTFLRSPPAIPIGGQQTNSTYQFTLQSLNLQDLRQYVPKLVDKVKTLPGLQNVDTDLQLSTPQIQVKFDHNKAATLGITAQQVEQTLSAAYGSSQVSTIYTPNDQFYVILEVKPEFQRDPSALSMLYVQSSTGKLVPLSAIANITQNVGPLTVTHVAQLPSSTISFDTLPGTSLSQATEAIKQAASEVLPSTITTSFQGSAQTFQQSFNDLGVLLLVSILVIYLILGILYEDFIHPITILSGLPSAGFGALLTLLIFQVDLNLYSFIGIILLVGIVKKNGIMLVDFAIEAQRKEGKNTFDAIYAACLIRFRPIMMTTMAALIGTLPIALGTGVGSEARRPLGIAIVGGLLFSQILTLYLTPVFYIYMETLRKKLKGCL
>NZ_CP040094.1|WP_174709249.1|1925464_1926013_+|NUDIX-hydrolase
MSNLKKWKTLKSQMVLDNPWCQVRQDEIELPNGKIIDDYFVSIKPDVAMVLPVTSNREIIFVRQYRHAVGEFFLELPAGNFDPTKESAEVAAIREFTEETGYIPQEFRKIGNLYDKPSKDTNKIHLFLAENVSKVGEQKLDITEEIEIVFILVESVLDKIIQGEISVAGTVAALFLGLNFIN
>NZ_CP040094.1|WP_174709248.1|1924289_1925342_-|dipeptide-epimerase
MQINVNLFTVNKRFPLTISRETTAQTTNVWVKISADGIEGWGEASPFGVGNHRQSTDAIKDALQQVVPLLQTFSPLQRQEIEQVLIQNQLPSAARAALDMAMYDWLGKRVGLPLWQLWGLDRNQIVPTSVTIGINSPEGARARARDWLKFTDVRLFKVKLGSPDGIDADKKMLLAVREEASEPEFFVDANGGWSLEDAIAMCNWLAELGIKYVEQPLPRGEEKNLAKLKEHSPLPIFVDESCFTSSDIPDLANYVDGINIKLMKSGGLTEAMRMVHTARAYRLQVMFGCYSDSSLANTAALQLAPLADYLDLDSHLNLIDDPFTGALLKEGRVLLNDLPGLGVKHSASTT
>NZ_CP040094.1|WP_174709247.1|1923259_1924306_-|DUF1611-domain-containing-protein
MRLPLNQRVAILLHEGTTGAHGKTGLAILRYSEAPIVAVIDRECAGKSLTELTSIKRDVPIVVSVAAALEYKPEVLVIGIAPSGGAIPDDYWLEIKDALEAGMSLVNGLHTPMANIPDLNALLKPGQLIWDVRKEPPNIGVASGIARTLPCRRVLTVGTDMAIGKMSTSLQLHWASKLRGWRSKFLATGQTGMMLEGDGVPLDAVRVDFAAGAVEQVVMRYGKNYDILHIEGQGSLLHPGSTATLPLIRGSQPTQLVLVHRAGQVHVRNHPHVIIPPLPEVIRLYETVASAGGAFASVPVVGIALNTAHLDESAAEESIAQITAETGLPCTDVVRFDANVLLDAVMKN
>NZ_CP040094.1|WP_174709246.1|1922575_1922746_-|ssl1498-family-light-harvesting-like-protein
MYTTVNEDGILNNYAAEPKVYYAEYPAIWEQRKYVLQGLFASLIVTTLVLIGFSVS
>NZ_CP040094.1|WP_174709245.1|1921672_1922398_-|Uma2-family-endonuclease
MTTQLGEAKSSTELVISWEALPADFHLEDEPVENTGQPLLAGALRESLEISGFIQPQMLIASNFGLCATINGQFVAKAPDWVYVPSVNQVLGERKSYTPNLDGDIPAIVMEFLSDAEGGEYSFKRTYPPGKWFFYEQILQVPIYVIFDPNGGLLEFYQLENSHYELKQPDENGRHWIDSMGLFLGTWQGTKEARTGYWLRWWDEAGNLLLWAVEQIEQERQQKERLIAYLQSQGIDPNNLP
>NZ_CP040094.1|WP_174709244.1|1919774_1921406_-|M48-family-metalloprotease
MKRIWKSLLPAWKWVLLSAATSILIILTQPTPLLAQEPAASTTIETTKPNSETTKVQKLREALQRSSTSEAPKPAPEVSEPKKPESPQEPPLSPEELTRQLKFIEADKLYLAGQIPEAEKIYREVKQPFGKTSDNQQRKAAILDPTQLSPGGKVYWRESEAGIAQKLQTKTLVPLQLLVEQYPEFIPGHIRYAEALKQYDRTKEALDILERASSLYPDQAELIKARITALAGDQKWMEASLAARQFAILNPKNPQAPEFTKLAEENLNHYKTYTQREIRGNVIGNIITGALGYAVTGSLLGPFSALDSTIMLLQGERAIGESVAKQAKKQLGVIIDEDILAYVNEIGQKLAKVGGRDEFKYEFFVIPEESLNAFALPGGKIFINAGAIAKANSEAELAGLMGHELSHVLLSHTFQLVSEGNLISNVTQYLPLGGTIGQLFALSYSRDMERQADNLGTRLIVATGYAADGLRNLMVTLEKQQKNAPPSWLSSHPGGNERVSYLENLITRNSYNRYAYEGVERHLEIKARVKKLLEEKKAREEKK
>NZ_CP040094.1|WP_174709243.1|1918911_1919694_-|hypothetical-protein
MSSQLLRLISLGSIGLSLCLGNSAAMAQYDSTGNGDGVVVPTVPSGGSSVPIDTSTGIPPSPSSDGTTRFTCQTYNGQSTVMYQPQSQPGQFFPWAAPAALGGGWDAQRRCAAIASRLELYRPDGLQELQTSVENNENIVCVTTEANPTCRIVLTVPRGKDPVVIRNSIFQNLTTADNGQQTIAVNTYGDRSSGGNELYNLGRTLLGSGNNRISSSRSGINLKPFLDRQDGGTGNNLRNGVAVRRQSQSNSVRLKPGNFR
>NZ_CP040094.1|WP_174709254.1|1934875_1935847_-|RNA-polymerase-sigma-factor,-RpoD/SigA-family
MNNLTFSDTKASNTNKSTTDTVRAYLKEIGRIPLLTQEQEIIFAQEIQQMMTILAEAEKLAVELKRTPTLSEWAKQMQLSEQELLQQLNEGKKAKQKMITANLRLVVSIAKQYQRRNLELMDLIQEGTLGLERGVEKFNPALGYRFSTYAYWWIRQGITRAIAQQGRTIRLPIHINEKLNKIKRVQRELSQTLGRIPTSTEIANALSLKPSQIREFLLLATQTISLDIRVSSEKDLRLQDLIEDYRYSSSSYITEESLNQEVKSLLSNLSRQQQEILNLHFGLTDGEELSLQQIGQRMGISRERVRQIEKQALKLLQQQLNKY
>NZ_CP040094.1|WP_174709255.1|1935975_1936884_-|hypothetical-protein
MSTRKAQRLQMCEPVPGLQILVKLSNTPLVRTVITTVTHHQLAIVGVVFVATLLFAMRENAPWLTVPKQVAIEFFSAVSQSLAALLGVLIVFLTFTSQLIAQRRHEDYYTLQIQIDQLIRLTQSLPTELSNFDQTLIALINYLVPLHLKDFPMWANSSQMLPLDKLLDNFKNENEWAQVQPECSLATHLHRQQILLVINNMEEILEGFSRLYNRILEISRFILAIVKLSFLLGVSLLFLLLFGIIDLQRKFPDLSLPVIVSLAIWVLISLLELVLDTWFFYKNLYGSSSHYLRFFPNTKYPN
>NZ_CP040094.1|WP_174709256.1|1936929_1938210_-|S41-family-peptidase
MFKQKSIVRIELAVIAAILAGTSLYTSKVLGKTQTTPQKLVDEVWQILDKNYVDANFNHQDWKAIRQQYLSRSYSSKKEAYGAIQEMVAKLGDRYTEFYDPQEFKALNSDISGNLSGVGLELAENEKTKALTVIAPIEGTPAFKAGILPGDLIVQINGQITQGMKIEDAVKRILGPVGTKVVLTIKRGSQSQTFQLTRANIAIHPVTYNTQTTAVGKIGYIRLPEFTQTAPAQMHRAIEALEKQQVQGYVLDLRSDPGGLLDASLQIASMWLKQGAIVSLVNRDQVKDSYNASGHPLTNKPLVILVDKGSASASEILSGALQDDKRATLVGTRTFGKGLVQAVEPLDDGSGLKLTIAKYYTPKGRDINHIGIAPDINVELSEAQQQALVENRTLGTLADPQYASAVADLSKLIQSGANHVSLHDEK
>NZ_CP040094.1|WP_174709257.1|1938324_1938696_-|hypothetical-protein
MNKKQIILPTLLFATILIGGMTGCTSSKSPDVSQGDNSGTKVSDTNTSAPSSPGANTPERAQKREAIRQQVEAVLTPDQVKELSTKLQQGEKMRKAVFSLNLTAEQKTKIQDIFKAAYPRRKG
>NZ_CP040094.1|WP_174709258.1|1938970_1940230_+|sensor-histidine-kinase
MVLLKRPLSWNSSMVLLTYPSFRLLLYLEWLLLATAVFMEVVLPFELSWSLLLRVVAITTFSLMGLRLPMVKLETKLFYTVLEFGLILLPTTQHSLSSRSVFLLCLVLVMRSCLIFKRLGQFLVLGLSLLTYGTLVLSRPIVPDKFMREKLIAMSLDWRLSNILLFSLTLVFALLLINALLAERQSREQLEIAHLQLEITNQQLCQYALRIEDQATLQERNRIAREIHDGLGHTLVAQTIQINNTLLFWESNNDKALTFLKQAKELGAEALLEIRRSLSLLRSNPLQGQSLKSAIEKLLTDFHQTTGIEPSCKINVPHTLPTEVNTALYRIVQESLTNICKHAQATSVTVGLLAHAGMIHLSIEDNGKGFNPTQNTTGFGLQGMRERAVALGAQLNLQSQLGTGCCISVCLPLSKLLVF
>NZ_CP040094.1|WP_174709259.1|1940233_1940881_+|response-regulator-transcription-factor
MIQILLVDDQHLIRQGLKSMLESNAEIQVIGEAENGQRALEQIPALQPDIVLMDVRMPVMDGVATTKAIAQQYPNIKVLVLTTFDDDEYVFQAMRVGAKGYLLKDTEPDELMLAIRSVYKGQTLLGPGLFEKALIPIPVTVPSVEPPPELAQLTPRELDVLRLIASGANNREIAESLFLSENTVKNYVTNILSRLSLRDRTQAALFAHSLFSGLK
>NZ_CP040094.1|WP_174713562.1|1941454_1941829_+|transposase
MAGRFEGLSDLEWKLFEDIFPKQASKRGKGMPHAPYRYVLNSLLYILITGCRWCDLPRGDIWASKSSSHRWLKRWRFDGTFEYIQGRVLAIANEKGLINWDFGAVDGSFSPAQWLRCIHKSENS
>NZ_CP040094.1|WP_174709260.1|1942208_1942361_+|hypothetical-protein
MKRGRPRKRIKVLAADKDYDSKQKRADLRKRGIRPQIPKRVWKTNQNLCS
>NZ_CP040094.1|WP_174709083.1|1942715_1943396_-|hypothetical-protein
MNYKNEVLLEAGFVNAGNLLSFASTVPYLQRCDILNSILLAQLAADKKYSRIDNTEKWYGFYTDTLGQLTWQSRVFQFNEYTPHNNTFTLEDVVFSVFEKNITDDQLSLVKKTINTFRDLPNDDMRVELYDKLTHSLHIINVQVGVVNSLSVMSTVGIILKTKQEVERLFTGKFSVSMLDSKIITVLYSAALNEELYSSIREKVIDKLGLKRNELILDLDIVLKVS
>NZ_CP040094.1|WP_174709084.1|1943573_1944338_-|hypothetical-protein
MSKQQVVDRIKEYISELELPEVDSKLPKVFRSESLAFQNDTPGAAANAGSLVSFVSGLTQEHKSDVLNSTLLAQLAATKKYDRFKQTRQWYEFYTSVLAQVGWVVPAFAYREYSPSGSSFLVADAIIEILKAIATGNEMDILVTSLNALKNNPKNEGSLTLFEQQSFPENLGTFQVLPVGEDDGQLVMAMSALEFRADKHVTRFLWFSWSNVSTKLFQSSQKAVLNEDVYSRVRAEVIKKLGDRASQYIKDIEI

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Crispr_ID: NZ_CP040094_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040094_8

1978343-1978741

Unclear

N:A

Consensus_repeat	Method
TGTTTCAGTCCCCGTGAGGGGATTTGGTTAATGGAAAC	CRISPRCasFinder
TGTTTCAGTCCCCGTGAGGGGATTTGGTTAATGGAAAC	PILER-CR
GTTTCAGTCCCCNTGNGGGGNNNTNG	CRT

5 spacers

cas4,cas6,cas3

The CRISPR arrays of NZ_CP040094_8

>merge|NZ_CP040094|8|1978343-1978741|CRISPRCasFinder,PILER-CR,CRT
AGTTTCAGTCCCCGTGAAGGGATTTGGTTAATGGAAACCCAACCCAAGGCGACCCTTGCACAAAATACAAAGTGTTTCAGTCCCCGTGAGGGGATTTGGTTAATGGAAACTTTGACTATTGTTGTAGCGTTTTCTGCCCCTATTCTTATGTTTCAGTCCCCGTGAGGGGATTTGGTTAATGGAAACATCTCCTGCCTATGACGGAGCAGGTGATGGGGGAAAGTTTCAGTCCCCTTGCGGGGTAATAGGCTTTGGAAACTAGAAATAAGTTCAAAATCGAACCTAAATCAAAATGAGTTTCAGTCCCCTTGCGGGGTAATAGGCTTTGGAAACCACGAGCATTAACAGATATTCCGCACTCATCAAACAACACGTTTCAGTCCCCTTGCGGGTTAATAG

>NZ_CP040094|8|7|1978343-1978675|CRISPRCasFinder
AGTTTCAGTCCCCGTGAAGGGATTTGGTTAATGGAAAC	CCAACCCAAGGCGACCCTTGCACAAAATACAAAG
TGTTTCAGTCCCCGTGAGGGGATTTGGTTAATGGAAAC	TTTGACTATTGTTGTAGCGTTTTCTGCCCCTATTCTTA
TGTTTCAGTCCCCGTGAGGGGATTTGGTTAATGGAAAC	ATCTCCTGCCTATGACGGAGCAGGTGATGGGGGAA
AGTTTCAGTCCCCTTGCGGGGTAATAGGCTTTGGAAAC	TAGAAATAAGTTCAAAATCGAACCTAAATCAAAATG
AGTTTCAGTCCCCTTGCGGGGTAATAGGCTTTGGAAAC

>NZ_CP040094|8|4|1978344-1978528|PILER-CR
GTTTCAGTCCCCGTGAAGGGATTTGGTTAATGGAAACC	CAACCCAAGGCGACCCTTGCACAAAATACAAAGT
GTTTCAGTCCCCGTGAGGGGATTTGGTTAATGGAAACT	TTGACTATTGTTGTAGCGTTTTCTGCCCCTATTCTTAT
GTTTCAGTCCCCGTGAGGGGATTTGGTTAATGGAAAC

>NZ_CP040094|8|3|1978344-1978741|CRT
GTTTCAGTCCCCGTGAAGGGATTTGG	TTAATGGAAACCCAACCCAAGGCGACCCTTGCACAAAATACAAAGT
GTTTCAGTCCCCGTGAGGGGATTTGG	TTAATGGAAACTTTGACTATTGTTGTAGCGTTTTCTGCCCCTATTCTTAT
GTTTCAGTCCCCGTGAGGGGATTTGG	TTAATGGAAACATCTCCTGCCTATGACGGAGCAGGTGATGGGGGAAA
GTTTCAGTCCCCTTGCGGGGTAATAG	GCTTTGGAAACTAGAAATAAGTTCAAAATCGAACCTAAATCAAAATGA
GTTTCAGTCCCCTTGCGGGGTAATAG	GCTTTGGAAACCACGAGCATTAACAGATATTCCGCACTCATCAAACAACAC
GTTTCAGTCCCCTTGCGGGTTAATAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040094.1\|WP_174709274.1\|1968709_1968991_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174713566.1\|1973533_1974862_+\|DUF4157-domain-containing-protein	unknown	unknown	gnl\|CDD\|379338
NZ_CP040094.1\|WP_174709280.1\|1984793_1985258_-\|DEAD/DEAH-box-helicase	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|350688
NZ_CP040094.1\|WP_174709279.1\|1979967_1980996_-\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	cas6	pfam10040_cas6_CAS-III:CAS-IV	gnl\|CDD\|337605
NZ_CP040094.1\|WP_174708137.1\|1966388_1967411_-\|IS4-family-transposase	unknown	unknown	gnl\|CDD\|376573
NZ_CP040094.1\|WP_174707959.1\|1975085_1975544_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174709281.1\|1985254_1985425_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|224122
NZ_CP040094.1\|WP_174709284.1\|1995555_1996185_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP040094.1\|WP_174709278.1\|1979260_1979860_-\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
NZ_CP040094.1\|WP_174709286.1\|2000190_2000820_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP040094.1\|WP_174713567.1\|1998367_2000182_+\|PAS-domain-containing-protein	unknown	unknown	gnl\|CDD\|226951
NZ_CP040094.1\|WP_174709273.1\|1968334_1968661_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174709283.1\|1988621_1995572_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226415
NZ_CP040094.1\|WP_174709271.1\|1963569_1963845_+\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NZ_CP040094.1\|WP_174709277.1\|1978045_1978309_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174709276.1\|1970296_1970485_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174709282.1\|1985688_1986801_+\|IS630-family-transposase	unknown	unknown	gnl\|CDD\|315923
NZ_CP040094.1\|WP_174709285.1\|1996430_1997024_+\|DsbA-family-protein	unknown	unknown	gnl\|CDD\|224565
NZ_CP040094.1\|WP_174709272.1\|1964523_1964835_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174709275.1\|1969448_1969859_+\|peptidoglycan-binding-protein	unknown	unknown	gnl\|CDD\|366659

Protein	Function_ID	Function_description	E-value
NZ_CP040094.1\|WP_174713566.1\|1973533_1974862_+\|DUF4157-domain-containing-protein	gnl\|CDD\|379338	pfam13699, DUF4157, Domain of unknown function (DUF4157). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 80 amino acids in length. This domain contains an HEXXH motif that is characteristic of many families of metallopeptidases. However, no peptidase activity has been shown for this domain.	2.03304e-10
NZ_CP040094.1\|WP_174709280.1\|1984793_1985258_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	2.04728e-15
NZ_CP040094.1\|WP_174708137.1\|1966388_1967411_-\|IS4-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	1.97298e-17
NZ_CP040094.1\|WP_174709279.1\|1979967_1980996_-\|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6	gnl\|CDD\|337605	pfam10040, CRISPR_Cas6, CRISPR-associated endoribonuclease Cas6. Cas6 is a member of the RAMP (repeat-associated mysterious protein) superfamily. It is among the most widely distributed Cas proteins and is found in both bacteria and archaea. Cas6 functions in the generation of CRISPR-derived guide RNAs for invader defense in prokaryotes.	7.25137e-13
NZ_CP040094.1\|WP_174709281.1\|1985254_1985425_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|224122	COG1201, Lhr, Lhr-like helicases [General function prediction only].	1.5447e-08
NZ_CP040094.1\|WP_174709284.1\|1995555_1996185_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	2.35532e-75
NZ_CP040094.1\|WP_174709278.1\|1979260_1979860_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	2.79653e-34
NZ_CP040094.1\|WP_174709286.1\|2000190_2000820_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.46601e-73
NZ_CP040094.1\|WP_174713567.1\|1998367_2000182_+\|PAS-domain-containing-protein	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	4.92386e-55
NZ_CP040094.1\|WP_174709283.1\|1988621_1995572_+\|AAA-family-ATPase	gnl\|CDD\|226415	COG3899, COG3899, Predicted ATPase [General function prediction only].	0
NZ_CP040094.1\|WP_174709271.1\|1963569_1963845_+\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	1.16961e-06
NZ_CP040094.1\|WP_174709282.1\|1985688_1986801_+\|IS630-family-transposase	gnl\|CDD\|315923	pfam13358, DDE_3, DDE superfamily endonuclease. This family of proteins are related to pfam00665 and are probably endonucleases of the DDE superfamily. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction.	4.93136e-30
NZ_CP040094.1\|WP_174709285.1\|1996430_1997024_+\|DsbA-family-protein	gnl\|CDD\|224565	COG1651, DsbG, Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones].	2.46537e-26
NZ_CP040094.1\|WP_174709275.1\|1969448_1969859_+\|peptidoglycan-binding-protein	gnl\|CDD\|366659	pfam01471, PG_binding_1, Putative peptidoglycan binding domain. This domain is composed of three alpha helices. This domain is found at the N or C-terminus of a variety of enzymes involved in bacterial cell wall degradation. This domain may have a general peptidoglycan binding function. This family is found N-terminal to the catalytic domain of matrixins. The domain is found to bind peptidoglycan experimentally.	1.70118e-18

>NZ_CP040094.1|WP_174709277.1|1978045_1978309_-|hypothetical-protein
MVSDFGCTVRMWDGEYAVRLQHLKSYNYLSAECEQMQVISDGINRVYSSALEESVQKFLEMLGKLNRAYLTQLEEKVLSLLESETGS
>NZ_CP040094.1|WP_174707959.1|1975085_1975544_-|hypothetical-protein
MSSDKLFHVYANQTPGLVEQGYSALFLLENSVSGVEMKAAHEGESSAAPVPNLEKWSHEAIIARSNMRPERMQKLKVAVNSGENLGFEYLQECWDDPALQIVIKKLVAKFPQWGIACVDGVICDSLPSSLISSASVLGFCTTFKQFIQNFGT
>NZ_CP040094.1|WP_174713566.1|1973533_1974862_+|DUF4157-domain-containing-protein
MQRQPYGKTEQREKISEENKEIQRKASVQTENKTGLPDNLKVGIENLSGLAMDDVRVHYNSPKPAELNALAYTQGSDIHVASGEEQHLPHEAWHVVQQTQGRVKPTMQMKDGVEANHEEGMEKEADVMGAKAIQSPKNPYQKLGLKEVFPQSSPTVQAFGWEEIWSMAEGFGLSSVMVYTAVAVVGLSALYLLLKNSKSKEEALLEVQKATGEACEETYEKERNGKEEAEKFQEPANLGELRAYINKQQFPPYATTNGEKRNWAFIIAKKYTRDEKKAQKFVQLVRNVTERQVLTSEPNESYSAPRSAEPIPIGVNAGRSKTKTRGVSANPPANAVQQPMQILPPPGYTLQNDSTGTTAYINNPNNHQFGGVALDHIVSVANGDSTRLHRSTKMKGTNIPTYVHPSDHELYTVTLDGQHTDGIGMITVYKIGEVRGGEHRFR
>NZ_CP040094.1|WP_174709276.1|1970296_1970485_-|hypothetical-protein
MRSERMQKLKVAGNSGENPGFNFLQEWWSDDPALQIVIKKLLAKYPQWGIAVVDGALVDWER
>NZ_CP040094.1|WP_174709275.1|1969448_1969859_+|peptidoglycan-binding-protein
MNWKVIYLLPALILATAVPAYSLTNNKSQSSDPANHIAQSTQQGNIMKKPNAVPKVNAKRKSNNVAKRSTRNVLTVGSRGETVKAVQNSLKQQGFYTASVNGVFDNKTRAAVIKFQKSKGLRADGIVGHRTLAALK
>NZ_CP040094.1|WP_174709274.1|1968709_1968991_-|hypothetical-protein
MGYIIFISATKILSDSELFIFKPDKSIEDGRETASWMVKNLHGSRMKEFWEKANSEKREPNAGDSEIDAASEEMRALYKASILAQSQSEQGFQ
>NZ_CP040094.1|WP_174709273.1|1968334_1968661_-|hypothetical-protein
MRCNSDTQPVISHCEEAAITPLGVASPQIVQGVSENEVELPTVTDCTTLALVDAAQGESVSLIGKAQDCGVEPKDCHKGACSAASVVQNEKSLNSAIANQTQRQGQVS
>NZ_CP040094.1|WP_174708137.1|1966388_1967411_-|IS4-family-transposase
MIINSFPKIVKDILKSLPKNDYPVLNSRLFFECWLSYALDNSLTSMRDLFNRLNNNCFEVDISTFSKANLHRSQKPFQEIYQKLNELVQKKVQKKLHNKYAICPIDSTIITLTSKLLWVLGHHQVKLFSSLNLSTGSPEDNFINFGHDHDYKFGSKMMSSLPINAVGVMDRGFAGLKFIQELVQENKYFVLRIKNNWKLEFDGSNGLVKVGASDDAQAYRVINFCDLETKTEFRLVTNLPESGDAAVHDDEIRDIYRLRWGVELLWKFLKMHLKLDKLITKNVNGITIQIYVSLIAYLILQLLSIPEQWGHTLLDKFRYLQSCMCQKISYVHWFEEMMFC
>NZ_CP040094.1|WP_174709272.1|1964523_1964835_+|hypothetical-protein
MQSIEKKGDGILVVRVTVAPDADKVKIHNHFMQGYEFAAKVLEAQYQERLEDKDLLISKQEAQINRLFDIVEQQGSVQKALAENPRKVSNYNRPIFKINFVGK
>NZ_CP040094.1|WP_174709271.1|1963569_1963845_+|pentapeptide-repeat-containing-protein
MQQDFSHKNLRGRSFKGQKFTGANFRYADIQGTDFCGANLREADFRHAQAGLQGWWAIFLVLVSCLLSGISGFIWYLNGYLLLLIGQFTRS
>NZ_CP040094.1|WP_174709278.1|1979260_1979860_-|CRISPR-associated-protein-Cas4
MNEDYLPLAYLNAWEYCPRRFYLEYVLGEMSDNEHIILGRHIHRNINEEGTLQEGEMLIHQQQWVWSDRLKVAGIIDAVEECDGQLVPVEYKKGKMAQHLNDHFQLCAAALCIEERTGRCLAYGEIFYHTNRRRQTVAFTPQLRQMTEQAIVLAQLASQTTMPVPIDNTKKCLSCSLKEICLPFEIKQLRESMTSETED
>NZ_CP040094.1|WP_174709279.1|1979967_1980996_-|CRISPR-system-precrRNA-processing-endoribonuclease-RAMP-protein-Cas6
MISTKDTEITFAGLSVVLKQVETSISPTPLNYWLSETQLLPVWIPLQINAGVTKIMPVLPNSVLYPNLMQSICQQIAQNTLVEWWQKTYELTGVEVDSHALHVIQVAVVSAAPLPTLGRAIHAQCFQWFANADTALAEHLHQQNTLPLTVVMQYVSPQKMQLRITLLKKELLAPLLWGFSTNLGEPIMLAGIPCQLGKSIDIVQASSFEKLVQVTTQNVIELRFLSPTSFKQNRGVQSFPLPELVFNSLLRRWNTFAPPELRFPEVEWNGLVSAYDLKTHALKMEGGAEIGTQGWVKYRFLDSQQARIATILAHFATFAGVGRKTGMGMGHVALNSKFKIQN
>NZ_CP040094.1|WP_174709280.1|1984793_1985258_-|DEAD/DEAH-box-helicase
MNIDFPNKLIYVVPLRTLANSLRQRAETLVENWEKAYPSSRSPVVTLQTGENPEDPRFEGDIVFCTIDQMLSSFLNIPYSVGRGSANVNSGAIFASYLVFDELHLLDPDRSFDTVLKVLQQVKGISPFLLMTATLTNELATQIQTLVNNGNYSS
>NZ_CP040094.1|WP_174709281.1|1985254_1985425_-|DEAD/DEAH-box-helicase
MIDEYFQTLTTFAPRNFQREAIAKLLQRQDILLRAPTGSGKTETAIAPFLFAKALN
>NZ_CP040094.1|WP_174709282.1|1985688_1986801_+|IS630-family-transposase
MPAKGFLSLEKKQRLQEILKQSLRAEVRERVLIILLMNDGRTQEEIAAVIGCSRRTVAYWCVHGDPDKIESLEDGRRKREYRKVTQEYLDKLIETVEKEPSDLGYEFGRWTGERLATYLSEKTGIKLTGSQVRKILQRKKYAYLWAKYSLEDRQNLVKRKEFKEKFKNYLSIGKMNPNHFQVWFWDESGFSLRVLRRKIWGKKGKRKKVTGQRSRGRVNIMGGLRLCDKKRLCYFVDKGNGDTFYEQLKQLYEFVRQEWIGNGYSSEDFCLSGSQIITILDNANYHKRKDICAEIEKNLPNVILDFLPAYSQDYNLIKLVWHSCKEYIAHRLFQSVAELKSLLDRLLNDGELIIHWGRKIKNKGNAICAT
>NZ_CP040094.1|WP_174709283.1|1988621_1995572_+|AAA-family-ATPase
MIALPGIAIQDKIYESSNSLVYRGIRDDGVGIIVKMLKLDYPSPQELTRYRQEYKITSSLNLEGVIKAYSQQDYQRTLVILLEDFGGESLEQWMHKRPDIFCPMLLSTFLGVAIALTDILGRIHAANVIHKDINPGNIVLNLDTGVVKIIDFGIATQFNRTNPTFKSPHVLEGTLAYLSPEQTGRMNRLLDYRTDFYSLGVTFYELLTGQLPFPTTDILELVHCHIAKQPVPPHELNSTIPKPVSDIILKLMAKNAENRYQSAWGIKADLEICAEQLKEIGQISSIQLALQDVCDRFQIPQKLYGRDKEVAMLLAAFDRVACSESNLVATLPSNSETTSQTQQTGNSKFQVEMMLVSGYAGIGKSALVQEIYKPITQKRGYFISGKFDQFQRNIPYSAIADALQKLVQQLLGEPDEYVQQWRSQLLTALGSNGQIIIDVIPEVELIIGKQPPVPEVGATEAQNRFHRIFGQFVRVFCAKKHPLVIFLDDLQWIDSATLNLIELMLLDEQAQSLFLIGAYRDNEVNSTHPLALMLERLRKQGVILQEIILAPLTLEPLSQLITETLHQNADIVRPLAELVLRKTEGNPFFVNEFLRMLYSENLLTFDRSHLRWQWNIAQLQTQNITNNVVELLLLKLKKLPEETQQILRLAACIGAEFDLETLAIMCEKSPKTVFQDLLPAIQGGFIQTLSELDEDLLVQEYKFLHDRVQQAAYALISEDRKQVTHYCIGQLLLNKLSEVEQSERLFDIVNHINYGQSLLTQKNEKEKLARLNLAAAQKAIASNAYEAAIRYLETGIGLLKEEAWMSQYDLMFHLYRTLCTAQLSNASYEQLSATTKVALEHISSAVDRADIRVFQITQYTLQGKCEKAVQTGLIGLHELGIEIKGKNLTELVREEFDAVAKSLENRSISSLLTLPTVSDPVIQAVIKLVVVDISLYHTANIELFSFVSLRVVRLSIEHGNIAESIKAYANYGLLLGLMEGQHQRGYEFADLAVQLSYKLNSKSQQCKAQMLFGGWIHVWSKPITGAATINYKGFLAGMESGDVQFASYNLLGNIFNRLFQGENLITVAEDNEKYQLVVEQIQDERSRVALAGAKFFIAKLALGQAAQESDRSLRETKKIVDRGETSQIRSSICLYYILRMHLSCLTADFEQGCHYFIEAGKILNSIVGFTTYSGYFYYGSLILLNLYFGLSQAEQSHALEQILLNRERLKAWSDSCPENFLHKFHLVEAEKARVLGQVLEAEEFYEQAIQGARENGYLQEEALAYELAAKHYLARGREKFAQLYMKEAHYCYERWGAMAKVKDLETRYPQLFPQSSGIAQTPIRTTSGTSSNHSPIAFDLAAVMKASLAISSEIELDKLLSSLMKILIENAGAQTGFLILENSGKWVIEAYCELNDDEKVCATQVLQSLPTANHLPESIINYVIRTHESVILNDATREGHFINEPYIQQNQTKSLLCLPLLNQSKLVGVLYLENQLAAGAFTPERVSFPAGGCANGDATRSQVLNLLSTQAAIAIENSKLYSKLRTSESQMAQFLEAVPVGIGIVDATGRPYYANQRGIQLMGTGIDPAVPPEQIAEVYQFYLAETDQIYPTEKLPVIRALSGERTTIDDIEIRQNNTTIPIEVWGTPVFDEQGNVAYAIAAFEDITERKKAENLLANYNRTLEQQVAQRTAALQQSEAELRGREQELRLITDALPALISYVDANRCYQFINRTHEVWFSHNRDEILGKSVHELLGETVYQRFEPFINQVFEGQTVTLEAEIPSSLGRHCISATLIPDFDCNAQVRGFYSLITDISEQQAALRERKRAEEVLRQSEAQFREQAILSDFRADVDSALAQSASLPLILHRCAQAVVKHFNAAFARIWTLNKDNNVLELQASVGMYTRLDGEYSRIPVGSLKVGRIAQERCPLLTNNVFEESSIDKEWAKREGMVAFAGYPILLDEQLVGVIAMFTRHPIPSSNLEALEFSAREIALGIRRKQAEEALQASEAELRALFCAMPDPLLVVNAEGRILRASLIESEKLSNPIDEQVGRTFSEIFERSQADTFLGCIRQALSTQQPLTVEYSSIVGGWKTWFATRISPISEHSVIWLARDITDRKRAEEASILEERNHMAREIHDTLAQAFTGIIIHARSASNKVTVDPEKAQTLLTQILDLARSGLAEARRSVEALHRPYLLESSNLQDALSRLAAQLNSSIVTQIVYEVMGTPYPLSSDLENNLFRIGQEALTNAIKHADASEIHIELIYEPTQCSLRIKDDGQGFNVKNQAMQNGFGLLGMAERAERIRAELKIQSDLGQGTEIMVSINRGLSQHESAQ
>NZ_CP040094.1|WP_174709284.1|1995555_1996185_+|response-regulator-transcription-factor
MNQLSSIRVLVVDDHPVVRQGLIGMLEEAPDIVIVGQGRNGNEAITVFQQQQPDVTLMDLRMPDMGGVQAITVICNEFPNARIIVLTTYDTDEEIYQGLRAGAKGYLLKDSEPEELLTAIRTVTRGQQYIPINVAAKLVQRMTAPELSDRELEVLQLVGQGMSNQEISTALNISESTVKTHINRILSKLDVKDRTQAAIIALKRGIASL
>NZ_CP040094.1|WP_174709285.1|1996430_1997024_+|DsbA-family-protein
MSDVIPGNPCGNCETERNQLVVLPSEQDHRQGSLNARVVLVEYGDYQCPQCSELYTSIQAIQRQLEATLFGRNSLCFVFRHFPQPQIHPQAQKAAAATEAAATQGQFWQMHEMLLKHQQQLEDGYLAEYADNLGLDVTQFIRDIAQKVYVDRINQDIASGMDSGVINTPGLFINGVRYRDALELEPLLVAIVGASHG
>NZ_CP040094.1|WP_174713567.1|1998367_2000182_+|PAS-domain-containing-protein
MPFKDTRGLDWLIVTVLPESDFMAKINQSIYMTILLCIAALLLGIAICILIARWIAKPIVSVSQSAKALADGAWDQTVEIERSGDLGELARSFNQMAQQLQIAFAKMQSLNQTLAQSETRLQKILESVPVGIVVMDATGRPYYANQKAIQLLGKGVLPSVTPEQIAEVYKLYVAGTDRPYPTEQLMIRRALNGEQGSVDDIEIHQGNRIIPIESWGTPIFDESGNILYAIAAFQDITERKQAEKLLAEYNRTLEQQVAQRTAALQASEAELRGVYDELRLQEQELRLITDALPVLISYVDANRCFQFINRTYEVWFNRSREEILGNSVRQLLGEVVYERVEPYINQVFAGQTVPLEAEIPFLDDKRCISATFIPDFDDNAQVRGFYSLMTDISDRKRAEHTSILEERNRMAREIHDTLAQSFTGILLQIGAVTQVLADDPEATQVHLEMIEELARAGLAGARRSVSALRPRLLEEGNLESALHRIVAQMRATTDTALICETQGIAYFLSTEVENNLLRIGQEALTNAIKYAYAGEIRVELVYNETQCILRVKDDGRGFGVGSTPLSGGFGLLGMSERAERIGAQLLIQSQPGQGTEIIVTINRE
>NZ_CP040094.1|WP_174709286.1|2000190_2000820_+|response-regulator-transcription-factor
MSRSTKIRVLIVDDHAIVRKGLATIINRDPEMTVIAQAEDGQQAIAAFREYQPDVTLMDLRMPKMGGVEAIMAICAEFKQARIALLTTYDGDEDIYRGLQAGAQGYLLKDSKLGELLNAIRAIHNGQKYILPEVGAKLLQRMSNPELSERELEVLRLMAQGMGNQEIATVLSIGESTVKSHVNRILSKLGVSDRTQAVITAVKRGIVSL

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Crispr_ID: NZ_CP040094_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040094_9

2096244-2098018

TypeIII-A

N:A

Consensus_repeat	Method
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	PILER-CR
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	CRISPRCasFinder
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	CRT

24 spacers

cas2,cas1,RT,csx3,WYL

The CRISPR arrays of NZ_CP040094_9

>merge|NZ_CP040094|9|2096244-2098018|PILER-CR,CRISPRCasFinder,CRT
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAACTTCGGTTGCTCCTGACTTCAATTTACGGTTGTAAGCCCTACCGATTGGGTTAAATCGGATTAGTTGTAAACCAGCTTCATTCAATTCAGTCTCAGCGTGTCTGACAACCCCTACCGATTGGGTTAAATCGGATTAGTTGTAAACTTAGTTGCATTGCTCTCACCAGTTTCACAAGCTGAAGACCCTACCGATTGGGTTAAATCGGATTAGTTGTAAACCTTTTTTTAAGGTTTCTACAAATTTGCAATTATACAACTGCTACCCTACCGATTGGGTTAAATCGGATTAGTTGTAAACTTAAAGTTGTCGCTTATATTAAAAATGTGACTATTGCTTCCCTACCGATTGGGTTAAATCGGATTAGTTGTAAACTTTGAACTGCTCTTCGCAGGATAAATCTTCTGGCCCTACCGATTGGGTTAAATCGGATTAGTTGTAAACTTTGTGGCTCCAATACGTAGAGCCATGTCAAGTACAGCCCTACCGATTGGGTTAAATCGGATTAGTTGTAAACCAGATTGTTCAACTTCTTTTCAATAGTACACCTTAAACCCCTACCGATTGGGTTAAATCGGATTAGTTGTAAACGCTTCATCGGAATATTCAAACGACACGAGTAGGAGACCCTACCGATTGGGTTAAATCGGATTAGTTGTAAACCAAATACGCTACTAACCCTTCCATTTATAAAAAGGCCCTACCGATTGGGTTAAATCGGATTAGTTGTAAACACAATGCCATAAGATTGTCAAAACCTCTTACCCCTACCGATTGGGTTAAATCGGATTAGTTGTAAACCACTAGCTAACTTTGGCTAGCGAACACAAACTAAACCCCTACCGATTGGGTTAAATCGGATTAGTTGTAAACATAAACCAATTACTACAGCTGCGAAAGCGATTTTACCCTACCGATTGGGTTAAATCGGATTAGTTGTAAACCGAATCTGAAGTTCCGTGAACAATAAAGTTTGGACCCTACCGATTGGGTTAAATCGGATTAGTTGTAAACCCAACTGCAACATATTTATTGCAGACAGGATTTAACCCTACCGATTGGGTTAAATCGGATTAGTTGTAAACTCTTCTACTACAAGTTGTGGTTTTACAGGTTGTGCCCTACCGATTGGGTTAAATCGGATTAGTTGTAAACTTTACAGTCGTCTGCTGAAGATCCTCGATGACATTCCCCTACCGATTGGGTTAAATCGGATTAGTTGTAAACACCTTGTCATAGAGTTTACAGAGTTTGGCAAGATCTGCCCTACCGATTGGGTTAAATCGGATTAGTTGTAAACGCTAGTAGCTCTCCTTCAGAGAGAAACATAGTTATCAACCCTACCGATTGGGTTAAATCGGATTAGTTGTAAACGAAGTAACTGTGATAGTAACCCCAGCTAGTGCTTTACCCTACCGATTGGGTTAAATCGGATTAGTTGTAAACATTAAAAGGTCTGCTGCCCCTGGGTGGCCATCATCCAGCCCTACCGATTGGGTTAAATCGGATTAGTTGTAAACTTTAATTGTTTGGTCAACTTGACCTTTTTTAGCGGTCCCTACCGATTGGGTTAAATCGGATTAGTTGTAAACGTCGTGTATGCCGCGAGAGGGACATTACTAAGTTTCACCCTACCGATTGGGTTAAATCGGATTAGTTGGAAACGGTGCATTACAGCGCCAGGCATTTATCCAACCCGTAATATTCCCTGCCGATTGGGTTAAATCGGATTAGTTAAAAGC

>NZ_CP040094|9|5|2096244-2097868|PILER-CR
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	TTCGGTTGCTCCTGACTTCAATTTACGGTTGTAAG
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	CAGCTTCATTCAATTCAGTCTCAGCGTGTCTGACAAC
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	TTAGTTGCATTGCTCTCACCAGTTTCACAAGCTGAAGA
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	CTTTTTTTAAGGTTTCTACAAATTTGCAATTATACAACTGCTA
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	TTAAAGTTGTCGCTTATATTAAAAATGTGACTATTGCTT
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	TTTGAACTGCTCTTCGCAGGATAAATCTTCTGG
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	TTTGTGGCTCCAATACGTAGAGCCATGTCAAGTACAG
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	CAGATTGTTCAACTTCTTTTCAATAGTACACCTTAAAC
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	GCTTCATCGGAATATTCAAACGACACGAGTAGGAGA
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	CAAATACGCTACTAACCCTTCCATTTATAAAAAGG
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	ACAATGCCATAAGATTGTCAAAACCTCTTAC
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	CACTAGCTAACTTTGGCTAGCGAACACAAACTAAAC
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	ATAAACCAATTACTACAGCTGCGAAAGCGATTTTA
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	CGAATCTGAAGTTCCGTGAACAATAAAGTTTGGA
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	CCAACTGCAACATATTTATTGCAGACAGGATTTAA
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	TCTTCTACTACAAGTTGTGGTTTTACAGGTTGTG
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	TTTACAGTCGTCTGCTGAAGATCCTCGATGACATTC
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	ACCTTGTCATAGAGTTTACAGAGTTTGGCAAGATCTG
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	GCTAGTAGCTCTCCTTCAGAGAGAAACATAGTTATCAA
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	GAAGTAACTGTGATAGTAACCCCAGCTAGTGCTTTA
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	ATTAAAAGGTCTGCTGCCCCTGGGTGGCCATCATCCAG
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	TTTAATTGTTTGGTCAACTTGACCTTTTTTAGCGGT
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC

>NZ_CP040094|9|8|2096244-2098018|CRISPRCasFinder
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	TTCGGTTGCTCCTGACTTCAATTTACGGTTGTAAG
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	CAGCTTCATTCAATTCAGTCTCAGCGTGTCTGACAAC
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	TTAGTTGCATTGCTCTCACCAGTTTCACAAGCTGAAGA
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	CTTTTTTTAAGGTTTCTACAAATTTGCAATTATACAACTGCTA
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	TTAAAGTTGTCGCTTATATTAAAAATGTGACTATTGCTT
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	TTTGAACTGCTCTTCGCAGGATAAATCTTCTGG
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	TTTGTGGCTCCAATACGTAGAGCCATGTCAAGTACAG
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	CAGATTGTTCAACTTCTTTTCAATAGTACACCTTAAAC
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	GCTTCATCGGAATATTCAAACGACACGAGTAGGAGA
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	CAAATACGCTACTAACCCTTCCATTTATAAAAAGG
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	ACAATGCCATAAGATTGTCAAAACCTCTTAC
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	CACTAGCTAACTTTGGCTAGCGAACACAAACTAAAC
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	ATAAACCAATTACTACAGCTGCGAAAGCGATTTTA
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	CGAATCTGAAGTTCCGTGAACAATAAAGTTTGGA
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	CCAACTGCAACATATTTATTGCAGACAGGATTTAA
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	TCTTCTACTACAAGTTGTGGTTTTACAGGTTGTG
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	TTTACAGTCGTCTGCTGAAGATCCTCGATGACATTC
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	ACCTTGTCATAGAGTTTACAGAGTTTGGCAAGATCTG
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	GCTAGTAGCTCTCCTTCAGAGAGAAACATAGTTATCAA
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	GAAGTAACTGTGATAGTAACCCCAGCTAGTGCTTTA
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	ATTAAAAGGTCTGCTGCCCCTGGGTGGCCATCATCCAG
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	TTTAATTGTTTGGTCAACTTGACCTTTTTTAGCGGT
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	GTCGTGTATGCCGCGAGAGGGACATTACTAAGTTTCA
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	GGTGCATTACAGCGCCAGGCATTTATCCAACCCGTAATATT
CCCTGCCGATTGGGTTAAATCGGATTAGTTAAAAGC

>NZ_CP040094|9|4|2096244-2098018|CRT
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	TTCGGTTGCTCCTGACTTCAATTTACGGTTGTAAG
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	CAGCTTCATTCAATTCAGTCTCAGCGTGTCTGACAAC
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	TTAGTTGCATTGCTCTCACCAGTTTCACAAGCTGAAGA
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	CTTTTTTTAAGGTTTCTACAAATTTGCAATTATACAACTGCTA
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	TTAAAGTTGTCGCTTATATTAAAAATGTGACTATTGCTT
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	TTTGAACTGCTCTTCGCAGGATAAATCTTCTGG
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	TTTGTGGCTCCAATACGTAGAGCCATGTCAAGTACAG
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	CAGATTGTTCAACTTCTTTTCAATAGTACACCTTAAAC
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	GCTTCATCGGAATATTCAAACGACACGAGTAGGAGA
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	CAAATACGCTACTAACCCTTCCATTTATAAAAAGG
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	ACAATGCCATAAGATTGTCAAAACCTCTTAC
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	CACTAGCTAACTTTGGCTAGCGAACACAAACTAAAC
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	ATAAACCAATTACTACAGCTGCGAAAGCGATTTTA
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	CGAATCTGAAGTTCCGTGAACAATAAAGTTTGGA
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	CCAACTGCAACATATTTATTGCAGACAGGATTTAA
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	TCTTCTACTACAAGTTGTGGTTTTACAGGTTGTG
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	TTTACAGTCGTCTGCTGAAGATCCTCGATGACATTC
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	ACCTTGTCATAGAGTTTACAGAGTTTGGCAAGATCTG
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	GCTAGTAGCTCTCCTTCAGAGAGAAACATAGTTATCAA
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	GAAGTAACTGTGATAGTAACCCCAGCTAGTGCTTTA
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	ATTAAAAGGTCTGCTGCCCCTGGGTGGCCATCATCCAG
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	TTTAATTGTTTGGTCAACTTGACCTTTTTTAGCGGT
CCCTACCGATTGGGTTAAATCGGATTAGTTGTAAAC	GTCGTGTATGCCGCGAGAGGGACATTACTAAGTTTCA
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	GGTGCATTACAGCGCCAGGCATTTATCCAACCCGTAATATT
CCCTGCCGATTGGGTTAAATCGGATTAGTTAAAAGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040094.1\|WP_174709361.1\|2104187_2105750_+\|TIGR03985-family-CRISPR-associated-protein	WYL	mkCas0075_WYL_CAS-I:CAS-III	gnl\|CDD\|274901
NZ_CP040094.1\|WP_174709363.1\|2106525_2107254_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174713572.1\|2101325_2102660_+\|ThiF-family-adenylyltransferase	unknown	unknown	gnl\|CDD\|238760
NZ_CP040094.1\|WP_174709352.1\|2094398_2094596_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174709360.1\|2102830_2104060_-\|CRISPR-associated-protein-Csx3	csx3	mkCas0115_csx3_CAS-I:CAS-III	gnl\|CDD\|370583
NZ_CP040094.1\|WP_174709356.1\|2099303_2099876_+\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350235
NZ_CP040094.1\|WP_174709351.1\|2092713_2093484_+\|hypothetical-protein	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NZ_CP040094.1\|WP_174713571.1\|2091856_2092105_-\|four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|274132
NZ_CP040094.1\|WP_174709358.1\|2100341_2100563_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|316933
NZ_CP040094.1\|WP_174709350.1\|2090896_2091532_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	unknown	unknown	gnl\|CDD\|234649
NZ_CP040094.1\|WP_174709355.1\|2098078_2099047_-\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350235
NZ_CP040094.1\|WP_174709349.1\|2089162_2090761_+\|phospholipid-carrier-dependent-glycosyltransferase	unknown	unknown	gnl\|CDD\|224839
NZ_CP040094.1\|WP_174709353.1\|2094745_2095750_+\|CRISPR-associated-endonuclease-Cas1	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|376633
NZ_CP040094.1\|WP_174708067.1\|2093492_2094307_-\|IS5-family-transposase	unknown	unknown	gnl\|CDD\|379129
NZ_CP040094.1\|WP_174709354.1\|2095750_2096026_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|378256
NZ_CP040094.1\|WP_174709357.1\|2099919_2100297_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174709347.1\|2087961_2088321_+\|XisI-protein	unknown	unknown	gnl\|CDD\|341357
NZ_CP040094.1\|WP_174709362.1\|2105779_2106361_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|379122
NZ_CP040094.1\|WP_174709359.1\|2100604_2101090_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|373079
NZ_CP040094.1\|WP_174709348.1\|2088468_2089020_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112

Protein	Function_ID	Function_description	E-value
NZ_CP040094.1\|WP_174709361.1\|2104187_2105750_+\|TIGR03985-family-CRISPR-associated-protein	gnl\|CDD\|274901	TIGR03985, hypothetical_protein_sll7078, CRISPR-associated protein, TIGR03985 family. Members of this protein family belong to CRISPR-associated (Cas) gene clusters. The majority of members are Cyanobacterial.	3.37096e-32
NZ_CP040094.1\|WP_174709360.1\|2102830_2104060_-\|CRISPR-associated-protein-Csx3	gnl\|CDD\|370583	pfam09620, Cas_csx3, CRISPR-associated protein (Cas_csx3). This entry is encoded in CRISPR-associated (cas) gene clusters, near CRISPR repeats, in the genomes of several different thermophiles: Archaeoglobus fulgidus (archaeal), Aquifex aeolicus (Aquificae), Dictyoglomus thermophilum (Dictyoglomi), and a thermophilic Synechococcus (Cyanobacteria). It is not yet assigned to a specific CRISPR/cas subtype (hence the x designation csx3).	4.26821e-23
NZ_CP040094.1\|WP_174709356.1\|2099303_2099876_+\|NYN-domain-containing-protein	gnl\|CDD\|350235	cd10911, PIN_LabA, PIN domain of Synechococcus elongatus LabA (low-amplitude and bright) and related proteins. This subfamily contains Synechococcus elongatus PCC 7942 LabA which participates in cyanobacterial circadian timing, it is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system, and appears to be necessary for KaiC-dependent repression of gene expression. This subfamily belongs to the LabA-like domain family which includes the N-terminal domain of limkain b1, a human autoantigen localized to a subset of ABCD3 and PXF marked peroxisomes. Also included in the LabA-like domain family are human ZNF451, uncharacterized Bacillus subtilis YqxD, uncharacterized Escherichia coli YaiI, and the N-terminal domain of a well-conserved group of mainly bacterial proteins with no defined function, which contain a C-terminal LabA_like_C domain. Curiously Pseudomonas putida S16 NicB , which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls into the LabA-like family. The PIN (PilT N terminus) domain belongs to a large nuclease superfamily. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	7.04063e-44
NZ_CP040094.1\|WP_174709351.1\|2092713_2093484_+\|hypothetical-protein	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	2.13664e-90
NZ_CP040094.1\|WP_174713571.1\|2091856_2092105_-\|four-helix-bundle-protein	gnl\|CDD\|274132	TIGR02436, S23_ribosomal_protein, four helix bundle protein. This family describes a protein of unknown function whose structure is a bundle of four long alpha helices. Some of the first members of this family were found encoded in the (atypically large) intervening sequence (IVS) of Leptospira 23S RNA, a region often present in the rRNA gene and removed during rRNA processing without re-ligation. However, this location is not conserved, and naming this protein as a 23S RNA protein is both confusing and inaccurate.	2.74045e-18
NZ_CP040094.1\|WP_174709350.1\|2090896_2091532_-\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	gnl\|CDD\|234649	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.	4.50713e-72
NZ_CP040094.1\|WP_174709355.1\|2098078_2099047_-\|NYN-domain-containing-protein	gnl\|CDD\|350235	cd10911, PIN_LabA, PIN domain of Synechococcus elongatus LabA (low-amplitude and bright) and related proteins. This subfamily contains Synechococcus elongatus PCC 7942 LabA which participates in cyanobacterial circadian timing, it is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system, and appears to be necessary for KaiC-dependent repression of gene expression. This subfamily belongs to the LabA-like domain family which includes the N-terminal domain of limkain b1, a human autoantigen localized to a subset of ABCD3 and PXF marked peroxisomes. Also included in the LabA-like domain family are human ZNF451, uncharacterized Bacillus subtilis YqxD, uncharacterized Escherichia coli YaiI, and the N-terminal domain of a well-conserved group of mainly bacterial proteins with no defined function, which contain a C-terminal LabA_like_C domain. Curiously Pseudomonas putida S16 NicB , which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls into the LabA-like family. The PIN (PilT N terminus) domain belongs to a large nuclease superfamily. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	3.1629e-40
NZ_CP040094.1\|WP_174709349.1\|2089162_2090761_+\|phospholipid-carrier-dependent-glycosyltransferase	gnl\|CDD\|224839	COG1928, PMT1, Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones].	1.74627e-48
NZ_CP040094.1\|WP_174709358.1\|2100341_2100563_+\|hypothetical-protein	gnl\|CDD\|316933	pfam14453, ThiS-like, ThiS-like ubiquitin. A member of the ubiquitin superfamily that is often fused to the ThiF-like (E1)- ubiquitin activating enzyme and is present in gene neighborhoods with components of the thiamine biosynthesis pathway.	0.00103593
NZ_CP040094.1\|WP_174709353.1\|2094745_2095750_+\|CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|376633	pfam01867, Cas_Cas1, CRISPR associated protein Cas1. Clustered regularly interspaced short palindromic repeats (CRISPRs) are a family of DNA direct repeats found in many prokaryotic genomes. This family of proteins corresponds to Cas1, a CRISPR-associated protein. Cas1 may be involved in linking DNA segments to CRISPR.	3.55645e-103
NZ_CP040094.1\|WP_174708067.1\|2093492_2094307_-\|IS5-family-transposase	gnl\|CDD\|379129	pfam13340, DUF4096, Putative transposase of IS4/5 family (DUF4096).	2.48148e-35
NZ_CP040094.1\|WP_174709354.1\|2095750_2096026_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|378256	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2. Members of this family of bacterial proteins comprise various hypothetical proteins, as well as CRISPR (clustered regularly interspaced short palindromic repeats) associated proteins, conferring resistance to infection by certain bacteriophages.	5.47332e-22
NZ_CP040094.1\|WP_174709359.1\|2100604_2101090_+\|hypothetical-protein	gnl\|CDD\|373079	pfam14462, Prok-E2_E, Prokaryotic E2 family E. A member of the E2/UBC superfamily of proteins found in diverse bacteria. Analysis of the active site residues suggest that members of this family are inactive as they lack the characteristic catalytic residues of the E2 enzymes. They are usually fused to or in the neighborhood of a multi/poly ubiquitin domain protein. Other proteins of the ubiquitin modification pathway such as the E1 and JAB proteins are also found in its gene neighborhood along with a distinct predicted metal-binding protein.	0.00708771
NZ_CP040094.1\|WP_174709347.1\|2087961_2088321_+\|XisI-protein	gnl\|CDD\|341357	cd16382, XisI-like, XisI is FdxN element excision controlling factor protein. This family contains XisI proteins, also known as FdxN element excision controlling factors, and similar proteins. FdxN element is excised from the chromosome during heterocyst differentiation in cyanobacteria. This is accomplished by the large serine recombinase XisF (fdxN element site-specific recombinase). The xisH as well as the xisF and xisI genes are required. XisI may function as recombination directionality factor (RDF), and needs XisH which may function as an endonuclease.	1.15081e-57
NZ_CP040094.1\|WP_174709362.1\|2105779_2106361_+\|HD-domain-containing-protein	gnl\|CDD\|379122	pfam13328, HD_4, HD domain. HD domains are metal dependent phosphohydrolases.	6.7942e-30
NZ_CP040094.1\|WP_174713572.1\|2101325_2102660_+\|ThiF-family-adenylyltransferase	gnl\|CDD\|238760	cd01483, E1_enzyme_family, Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.	1.66229e-20
NZ_CP040094.1\|WP_174709348.1\|2088468_2089020_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	6.3627e-34

>NZ_CP040094.1|WP_174709354.1|2095750_2096026_+|CRISPR-associated-endonuclease-Cas2
MLVVVVYDIPDDKRRSKLSNFLEGYGRRIQLSVFECFLSLSEMRQLYDDVKKRVKASEDNVRFYWISQEAVNRVLTIGGESPQPPPKYYVI
>NZ_CP040094.1|WP_174709353.1|2094745_2095750_+|CRISPR-associated-endonuclease-Cas1
MAAIYLIEQGTSIYKDYQRFIIHVSEKPKIEVPVREVEQIIVFGNIQLSTHVINACLQERIAVLFLSQSGQYHGHLWSEESTNLDNQLIQIERRGDDYFQFSISKVIVLGKLINSKQLLMRFNRKRKLVEVEKAIFGINQDIDSLDLVDNLDSLRGYEGIAAARYFPAFGKLITNSAFSFSQRFRQPPTDAVNSLLSFGYTLLFNNVLSFIIAEGISPYLGNFHYGERQKPYLAFDLMEEFRSPVVDSLVLKIINNSIFKPQDFDLVPSTGGIYLSQSARKVFLKQFETRMNEEVSHPDLQSPVTYRHAIQLQVRRYKRSLLSSVAYEPFLRAT
>NZ_CP040094.1|WP_174709352.1|2094398_2094596_+|hypothetical-protein
MMNAEKTQITSFNRGFRFLGHGFLENAIFPIDVNSEKLKSGIEKSKSKKKVPTLGKKHKHRMPQP
>NZ_CP040094.1|WP_174708067.1|2093492_2094307_-|IS5-family-transposase
MSRLPAIENPQRKPYPSDLSDAEWLIIKPFLPKPKGFGHPVEVDLREILNAIFYVQRTGCQWEMLPHDLPPYTTVYGYFQKWQRKGIWQKIHDQVRHQLRQDLGRDEHSSVAIADSQSVKTTGKKGEVYGFDGGKKVKGRKRHIVVDSQGLLIGVLVTEANASERLGAVVVLHESAQELSKLEVVWVDQGYSGENFAQAVKQVCGEQVRVEVIERISKTFERLPKRWIVERTFGWLNRFRRLSKDYELYTEISEAMIYGSLIRLMVKRMAA
>NZ_CP040094.1|WP_174709351.1|2092713_2093484_+|hypothetical-protein
MDIIAHEFLELSNFQRAWEKVAENRGCAGVDGETIDKFASNQTINIYQLRNAVSNSTYQPQPCKQVIIPKKNGSRRELKIPTVRDRIVQQALLNVLYPIMEAKFSSASFAYRPNLSYLNAVEKVADWRDHGYSWVLDADIVKFFDNIDHQRLLTQVRIHINNPGILCLIKSWVSVGMLTEEGLILPQKGIPQGAVISPMLANIYLHEFDEFITATDLKLVRYADDFLILSPTQERILQAKLEIINLLDSMGLRADS
>NZ_CP040094.1|WP_174713571.1|2091856_2092105_-|four-helix-bundle-protein
MTYYLLLIFHGANYSEAKYAQSNKDFINKYSIALKEASETLYWIKIMIKSELVSKSKFQNLIEENEIIIKILTTSINKLKEK
>NZ_CP040094.1|WP_174709350.1|2090896_2091532_-|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB
MAAVRVRQHVNPLAKKYQTPASPLDWGKIYAKPNQPLHLDIGCAKGQFLLNMAKIEPNWNFLGLEIREPLVVEANRLSSELALTNLHYLFCNVNNSLDSLLSSLPPGSLQRVTIQFPDPWFKTRHAKRRVVQPELVAELASYLAVGGIVFVQSDMEFIAVEMRDHFAAHPAYQKVGTEEWLAENPLPVPTEREMGTQKKGEPVYRALFVRR
>NZ_CP040094.1|WP_174709349.1|2089162_2090761_+|phospholipid-carrier-dependent-glycosyltransferase
MTKKWFRIGMVSVFLLSLALRFWGLERFNTLVFDEVYFAKFGNDYLTHTPFFNAHPPLSQYMIGIGIWIGSHIPFWHDTVNGLTGSMRSPWTYRWFNALTGSFIPLVVAAIAYQLSYRRSFALLAGLFTACDGIFLVESRYALSNIYIVIFGLLGHWFLLLALDKQNRRRSFWLVFAGIAFGASVGAKWNGLWFLSGAYLIWIVAWVIQGTHSFSNAKLFFQSPSLEETGGRRQDSAALASPRASAEGRSQESEVRSQEVGISTYSPPFIPSPSSESPLQNLTQLNIFQMLFYLGIIPAFIYSIIWIPHLQLDKTYGFIAVHQQILKFHLHLGGNSSDVHPYCAAWYKWPLMTRPMAYYYQTAESITEPLPVMGPPLPAGAGQVIYDVHAMGNPFLWWFGVAAILFLVGMLVSQAVMPWVKEKRFSVPATLSIDTWIALYLVINYAANLAPWVEVTRCVFIYHYMCAVVFVFLAIAWFVDQCLRSYYQQLRALGVTITFIILAAFIFWMPIYLGLPLSPHGYKLRMWFNSWI
>NZ_CP040094.1|WP_174709348.1|2088468_2089020_+|GNAT-family-N-acetyltransferase
MTNLLETERLIIRSWIPEHDAEQAFIIYSDPEVTHFLGKSSRSASIESQRQRLIEGIERMHQRNNGTGSWAIVEKETTAIVGTILLKQLPDKDGLTTQDYEVGWHLRRASWGKGYATEAGRVMLNYGFSVLNLPVIYAVVKPENHASIRVTERLGMKPVGRTNNYYGIELLLFQLDALEEWRE
>NZ_CP040094.1|WP_174709347.1|2087961_2088321_+|XisI-protein
MGNLEQYRQLICSILTEHTKIPYSYGNIQHETIFDREQDRYLVMILGREPVPELSPTATRRVHGCLIHIDIIDGKIWIQRDGTEEGVATELVRAGVPKDRIVLGFRSEELRKDSEYAVA
>NZ_CP040094.1|WP_174709355.1|2098078_2099047_-|NYN-domain-containing-protein
MKLAKAISLTAGLSAACIITGLIIKQPMLKSLGKVTALGAISIGVIVKLNSAKADKERQLAAFKQEKTSQQHKFEKTQNELNKLGKKFQTQDTRQRLHLANVQKLQHQQKVILATVTSLEKKLDFYEKAASQKAENLKDNFNKNSVKPVIESQESITRVYIDGNNLSFAVDGLQIELDYDALRIELSQDTSRTNFKYYTGIHSPMNDGQRRFIDYLKYQRYEVIGLPISARPDSKTFKTVGDDVKIAVDMIREVKKGDDVILVSGDGDFIPVVEEIQCRGVKVTVVAKKSMLSEQLSKIADEVIYLDDIQYKLAKYRKFDAA
>NZ_CP040094.1|WP_174709356.1|2099303_2099876_+|NYN-domain-containing-protein
MVTTRRVMILADGDNTFLAAQSFNRKIDWPKIRDYLADPKEGRELIEMVIYVGLPPARERFEEQRKTKEKFVYWARSNGFLVVSKEGKAKGDDYETNIDVVMAMDAIQLALEVKPDIVVLVTGDSDFAYLAEKLRRRGIRVEVASVEQSLGSELKNSANSVVDLIEVFDKFNAQNGNQNVHRIGNSNVFD
>NZ_CP040094.1|WP_174709357.1|2099919_2100297_+|hypothetical-protein
MQTLNGKLVNQEQGQIDLIKQQTEGIIQRCKNLESQFTAINQQKDTTYLQEINAVKIYINKLEKRLNFLERNILNQAKQLLYLKIGVAIGLVGLWFWLGMNNQPANHEIKPKKYVESIQLDMHSV
>NZ_CP040094.1|WP_174709358.1|2100341_2100563_+|hypothetical-protein
MRAIINGKLTDLPEGVTVEDLRKRLPEIGNDDVMEEGFGGTRPLKNTEALKEGSKVWTVPKIVKGSKICDLKL
>NZ_CP040094.1|WP_174709359.1|2100604_2101090_+|hypothetical-protein
MTVTINQEKSGFQATARLLEELNILEKVAKNIIVGSKTIGNMKYTAILVKGMPLSSKKFTVSNTDILFLLPLDYPRLPPIGCYLNYPWNTTGEGDHHFTRQSYYGAPFLSDEGWYWYCVGLGGGFNREVWLNSWKPTNQVDKGHNLATLFITARHAINSDE
>NZ_CP040094.1|WP_174713572.1|2101325_2102660_+|ThiF-family-adenylyltransferase
MWQQFRQSMLKSRTMNEEVIGFFFCKRQQISKNKIRYIPKAWVVPLSDCYEDQSASGLVLTQKFHWYLLKNYLNQGLHVVHIHTHTGDVSPDFSFVDDRYESEYSRFIASSFPKKPRLISGVFDESLQQSQFRIWDRKGQSYQSIKCYQSWLELSENRELLDNLNLQNNVESMFVRQKIFGNSCQKQLNELKVTLIGCGGIGSIFAELLGRLGVKNWVLIDPDRLETVNLNRMPGATQKMADQRWYKVDYVKYFIKKIYQTGSCVKTIPTSIEHELAKQEIVSSDLIVVATDNHLSRQVAQELALEYMRPLVCLGTHIDIKKYDNTPRMYCRVTVPPLGGGWCLMCGNIINLQRAALESAPIEINQIAANAGYLEGIDDPSVFWLNSICASTGVGIIHGMVSGFINLDAGIDWIYEFPGSVWHKTNIEHLETPDCYFCSSALFG
>NZ_CP040094.1|WP_174709360.1|2102830_2104060_-|CRISPR-associated-protein-Csx3
MTLKLICEYDAQEQPYQKIEIPYENQLPAEILKKLDLPKGIDFNYGVVIDGKAPNWLYSNLAYQCRNAAWVSCYYPQLQGAIVVYSQTPTVKVGQIQGSTKNNLLNGNLELKVNEVITVDGDRYQCLIIHAVDISPQALDSLTLPSDLNWNREIVLWGQAPVWLYTHLVMRCQQALWIACYNIRTTEAVVVVSQCPELVPGDKFKLVPKSPCPAIVFGGPPNSGKSLLAYTLKQTLVNMGWNNKVYLHRTTWDGEGDWFAQMMGTNPELANKLSEIAGRWKKPENPAEYFSQQAEVIKEIRKYTDLVLVDLGGIPREADQILLPSCSHYVIISNSLEEVAKWHKFFQTLNTDTQEQLIPLTVIHSVKENKLEILNREPYLEMIAGPWRYGETETVPQELVEEVIKLIRE
>NZ_CP040094.1|WP_174709361.1|2104187_2105750_+|TIGR03985-family-CRISPR-associated-protein
MSANSTQIFDYPPTVELLRSFLPSKAVLLEEKALKKAWRIYIYLKTIYGDGISLGNDKYINSPLAGKLASYEFSFLDWLSELEVCLLNQIPKQLNQAKGNSNSNKKQQKAEEREKAKENICLLQQLTIEDIWYQMFYLQAERDKWIDDFKYFYKISETEIQHLLQLRPFDSQGDNFTNQTRLYRLDFQISLANAEKNHWLKAIYDSEQKLTGNYFKVDSWLQLIPESLEKNNHQQFNNEVNSEYINNEELADFITRFANNTQKRLLFTAEFIMSANIKKQKYNALINTLELNWSKSDSVKPLKITYKKFQTSRVITTIIFPVIFYYIKRGPYLYAIRPTEFEDENYYWEGYRLDRILDVEILDWDNEQIPVKLRELKDENQLPTPEDVEDSLDADTLGYAFWKTQKMMFVRFERNHYRNYIQDTSRQKIFKEINFQNFQELNSDLERFFNNKEITLILQSLRGQINEKYVFCIAKFYEEDIDVFLRILIWGKNVKVILPFELKDKIFQEIQSTMKQYQEK
>NZ_CP040094.1|WP_174709362.1|2105779_2106361_+|HD-domain-containing-protein
MNLNSINKPKLTIRFEEALVYATQLHTEQVRRISGVPYISHLLSVTALVLEDGGSEDEAIAALLHDAIEDQGGRRTGEIIRQKFGDKVADIVESCTESDAVPQPPWKERKQKYLENISQGSPEVLRVALADKVHNARSNLSEWYLYGEKAWNKEQRQRTLWFYRSVIEVAQTLIDSRLLEEFRRIVQQLEAIE
>NZ_CP040094.1|WP_174709363.1|2106525_2107254_+|hypothetical-protein
MKYSLRKQSKKGSTISFEQVQQEPPLWKSPLTWLCAAGGVLLIGIPLVMDNVTHRVNSAFLVDISLSNQPYQTSLEALCRQYVEHLVEGDVRILGKFADRAIILSNQEFQERDRLSIQNQCKYITTQPSGIGRVPGTSLIDALSRLETEIGHQQSQDNTRPVAAVVVIQAAELVNHQQQDFTVIKSKIEAIIHKGGALAIIGPDVDLQNQLSSQLSSVKNTQICTYSDGQACLDWLFQIGRK

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Crispr_ID: NZ_CP040094_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040094_10

2110528-2112181

TypeIII

N:A

Consensus_repeat	Method
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	PILER-CR
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	CRISPRCasFinder
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	CRT
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	PILER-CR

22 spacers

WYL,csx3,csm6,cmr5gr11,cmr4gr7,cmr3gr5

The CRISPR arrays of NZ_CP040094_10

>merge|NZ_CP040094|10|2110528-2112181|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAACGTTGTAACCCATATGCTTGGGGATGCAGCCTCGTTAGCCCTACCGATTGGGTTAAATCGGATTAGTTGGAAACGTGAATCTCCAAGAATTTGGTAATCATTTGAATCGAGAATCCCCTACCGATTGGGTTAAATCGGATTAGTTGGAAACTCTTTTACTCCTTAATCGTTATCTCACCTCCTTGCCTCCCTACCGATTGGGTTAAATCGGATTAGTTGGAAACTTGACAGTGTGAAAGTTTCTACCATCTGTACTACCCTACCGATTGGGTTAAATCGGATTAGTTGGAAACAGCTGTTACTTGGATCGTCAACCTCGTAAAGATTGACCCTACCGATTGGGTTAAATCGGATTAGTTGGAAACATAATTTAGAGGAAAAGTCAGAGAGTTCAAACGATCGGATTCCCTACCGATTGGGTTAAATCGGATTAGTTGGAAACGGAAGACCACTTCCTCTTGATGGAATTGTTTCTAGCCCTACCGATTGGGTTAAATCGGATTAGTTGGAAACGTTGATTTTAAAGCCTGGCTACACTGAACTACGACCCTACCGATTGGGTTAAATCGGATTAGTTGGAAACAATTGATCTTGGATGCCGGTAAACAGTTTCAGGTTGACCCTACCGATTGGGTTAAATCGGATTAGTTGGAAACACAACGTCCAACACTTCGCTAAGAATCAGTTGCCCCTACCGATTGGGTTAAATCGGATTAGTTGGAAACAAAATATCAAACCTATTATTAAACTGGAAATGTAAGATATACCCTACCGATTGGGTTAAATCGGATTAGTTGGAAACTGTAATTGGTTTCCCGGTCTTCGGGTCGATTGGAGCTGGTTCAACCCTACCGATTGGGTTAAATCGGATTAGTTGGAAACCCCAATGTTTTTTGGCCTTATCACTGTCCTGAGAAAGTCCCTACCGATTGGGTTAAATCGGATTAGTTGGAAACCTCCTAAATTCGATAGAGAAGCGGAAGAACTACCAGCAGCCCCTACCGATTGGGTTAAATCGGATTAGTTGGAAACGCTGGCAGTAACTTGTTTAGACCAAGAATTGTGCCAGCCCTACCGATTGGGTTAAATCGGATTAGTTGGAAACGCCAACGTCACTGCGTGAAAAACCAATCTGCGTGTTCCCTACCGATTGGGTTAAATCGGATTAGTTGGAAACATTTCGCTCACGATGCCTCTACCAAATGTTTATTTTTAGTCCCTACCGATTGGGTTAAATCGGATTAGTTGGAAACGCTTTTAACACTCCTGCTAAATTGGTACTGGTAGAACCCTACCGATTGGGTTAAATCGGATTAGTTGGAAACGAAACTACTGAACAAGCCGCGCTCAAAAGGAGGCCGCAAAACCCTACCGATTGGGTTAAATCGGATTAGTTGGAAACAATTTGTGGCATTAAGTCTAAGCTCATCTTAAACCCTACCGATTGGGTTAAATCGGATTAGTTGGAAACATGACAGGTAAAATGGTTAGAAGCTCCCACGAAAAAACCCTACCGATTGGGTTAAATCGGATTAGTTGGAAACTCTGGAGGAGCGGCTTGAGCGATAATTGGAGAAAATAAACCCTACCGATTGGGTTAAATCGGATTAGTTGAAAAC

>NZ_CP040094|10|6|2110528-2111287|PILER-CR
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	GTTGTAACCCATATGCTTGGGGATGCAGCCTCGTTAG
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	GTGAATCTCCAAGAATTTGGTAATCATTTGAATCGAGAATC
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	TCTTTTACTCCTTAATCGTTATCTCACCTCCTTGCCT
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	TTGACAGTGTGAAAGTTTCTACCATCTGTACTA
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	AGCTGTTACTTGGATCGTCAACCTCGTAAAGATTGA
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	ATAATTTAGAGGAAAAGTCAGAGAGTTCAAACGATCGGATT
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	GGAAGACCACTTCCTCTTGATGGAATTGTTTCTAG
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	GTTGATTTTAAAGCCTGGCTACACTGAACTACGA
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	AATTGATCTTGGATGCCGGTAAACAGTTTCAGGTTGA
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	ACAACGTCCAACACTTCGCTAAGAATCAGTTGC
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAACAAAATATCAAACCTATTATTAAACTGGAAATGTAAGATATACCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	TGTAATTGGTTTCCCGGTCTTCGGGTCGATTGGAGCTGGTTCAA
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	CCCAATGTTTTTTGGCCTTATCACTGTCCTGAGAAAGT
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	CTCCTAAATTCGATAGAGAAGCGGAAGAACTACCAGCAGC
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	GCTGGCAGTAACTTGTTTAGACCAAGAATTGTGCCAG
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	GCCAACGTCACTGCGTGAAAAACCAATCTGCGTGTT
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	ATTTCGCTCACGATGCCTCTACCAAATGTTTATTTTTAGT
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	GCTTTTAACACTCCTGCTAAATTGGTACTGGTAGAA
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	GAAACTACTGAACAAGCCGCGCTCAAAAGGAGGCCGCAAAA
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	AATTTGTGGCATTAAGTCTAAGCTCATCTTAAA
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	ATGACAGGTAAAATGGTTAGAAGCTCCCACGAAAAAA
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	TCTGGAGGAGCGGCTTGAGCGATAATTGGAGAAAATAAA


>NZ_CP040094|10|9|2110528-2112181|CRISPRCasFinder
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	GTTGTAACCCATATGCTTGGGGATGCAGCCTCGTTAG
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	GTGAATCTCCAAGAATTTGGTAATCATTTGAATCGAGAATC
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	TCTTTTACTCCTTAATCGTTATCTCACCTCCTTGCCT
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	TTGACAGTGTGAAAGTTTCTACCATCTGTACTA
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	AGCTGTTACTTGGATCGTCAACCTCGTAAAGATTGA
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	ATAATTTAGAGGAAAAGTCAGAGAGTTCAAACGATCGGATT
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	GGAAGACCACTTCCTCTTGATGGAATTGTTTCTAG
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	GTTGATTTTAAAGCCTGGCTACACTGAACTACGA
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	AATTGATCTTGGATGCCGGTAAACAGTTTCAGGTTGA
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	ACAACGTCCAACACTTCGCTAAGAATCAGTTGC
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	AAAATATCAAACCTATTATTAAACTGGAAATGTAAGATATA
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	TGTAATTGGTTTCCCGGTCTTCGGGTCGATTGGAGCTGGTTCAA
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	CCCAATGTTTTTTGGCCTTATCACTGTCCTGAGAAAGT
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	CTCCTAAATTCGATAGAGAAGCGGAAGAACTACCAGCAGC
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	GCTGGCAGTAACTTGTTTAGACCAAGAATTGTGCCAG
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	GCCAACGTCACTGCGTGAAAAACCAATCTGCGTGTT
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	ATTTCGCTCACGATGCCTCTACCAAATGTTTATTTTTAGT
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	GCTTTTAACACTCCTGCTAAATTGGTACTGGTAGAA
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	GAAACTACTGAACAAGCCGCGCTCAAAAGGAGGCCGCAAAA
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	AATTTGTGGCATTAAGTCTAAGCTCATCTTAAA
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	ATGACAGGTAAAATGGTTAGAAGCTCCCACGAAAAAA
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	TCTGGAGGAGCGGCTTGAGCGATAATTGGAGAAAATAAA
CCCTACCGATTGGGTTAAATCGGATTAGTTGAAAAC

>NZ_CP040094|10|5|2110528-2112181|CRT
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	GTTGTAACCCATATGCTTGGGGATGCAGCCTCGTTAG
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	GTGAATCTCCAAGAATTTGGTAATCATTTGAATCGAGAATC
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	TCTTTTACTCCTTAATCGTTATCTCACCTCCTTGCCT
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	TTGACAGTGTGAAAGTTTCTACCATCTGTACTA
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	AGCTGTTACTTGGATCGTCAACCTCGTAAAGATTGA
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	ATAATTTAGAGGAAAAGTCAGAGAGTTCAAACGATCGGATT
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	GGAAGACCACTTCCTCTTGATGGAATTGTTTCTAG
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	GTTGATTTTAAAGCCTGGCTACACTGAACTACGA
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	AATTGATCTTGGATGCCGGTAAACAGTTTCAGGTTGA
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	ACAACGTCCAACACTTCGCTAAGAATCAGTTGC
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	AAAATATCAAACCTATTATTAAACTGGAAATGTAAGATATA
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	TGTAATTGGTTTCCCGGTCTTCGGGTCGATTGGAGCTGGTTCAA
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	CCCAATGTTTTTTGGCCTTATCACTGTCCTGAGAAAGT
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	CTCCTAAATTCGATAGAGAAGCGGAAGAACTACCAGCAGC
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	GCTGGCAGTAACTTGTTTAGACCAAGAATTGTGCCAG
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	GCCAACGTCACTGCGTGAAAAACCAATCTGCGTGTT
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	ATTTCGCTCACGATGCCTCTACCAAATGTTTATTTTTAGT
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	GCTTTTAACACTCCTGCTAAATTGGTACTGGTAGAA
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	GAAACTACTGAACAAGCCGCGCTCAAAAGGAGGCCGCAAAA
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	AATTTGTGGCATTAAGTCTAAGCTCATCTTAAA
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	ATGACAGGTAAAATGGTTAGAAGCTCCCACGAAAAAA
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	TCTGGAGGAGCGGCTTGAGCGATAATTGGAGAAAATAAA
CCCTACCGATTGGGTTAAATCGGATTAGTTGAAAAC

>NZ_CP040094|10|7|2111329-2112181|PILER-CR
	GTTGTAACCCATATGCTTGGGGATGCAGCCTCGTTAG
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	GTGAATCTCCAAGAATTTGGTAATCATTTGAATCGAGAATC
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	TCTTTTACTCCTTAATCGTTATCTCACCTCCTTGCCT
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	TTGACAGTGTGAAAGTTTCTACCATCTGTACTA
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	AGCTGTTACTTGGATCGTCAACCTCGTAAAGATTGA
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	ATAATTTAGAGGAAAAGTCAGAGAGTTCAAACGATCGGATT
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	GGAAGACCACTTCCTCTTGATGGAATTGTTTCTAG
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	GTTGATTTTAAAGCCTGGCTACACTGAACTACGA
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	AATTGATCTTGGATGCCGGTAAACAGTTTCAGGTTGA
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	ACAACGTCCAACACTTCGCTAAGAATCAGTTGC
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAACAAAATATCAAACCTATTATTAAACTGGAAATGTAAGATATACCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	TGTAATTGGTTTCCCGGTCTTCGGGTCGATTGGAGCTGGTTCAA
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	CCCAATGTTTTTTGGCCTTATCACTGTCCTGAGAAAGT
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	CTCCTAAATTCGATAGAGAAGCGGAAGAACTACCAGCAGC
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	GCTGGCAGTAACTTGTTTAGACCAAGAATTGTGCCAG
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	GCCAACGTCACTGCGTGAAAAACCAATCTGCGTGTT
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	ATTTCGCTCACGATGCCTCTACCAAATGTTTATTTTTAGT
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	GCTTTTAACACTCCTGCTAAATTGGTACTGGTAGAA
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	GAAACTACTGAACAAGCCGCGCTCAAAAGGAGGCCGCAAAA
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	AATTTGTGGCATTAAGTCTAAGCTCATCTTAAA
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	ATGACAGGTAAAATGGTTAGAAGCTCCCACGAAAAAA
CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC	TCTGGAGGAGCGGCTTGAGCGATAATTGGAGAAAATAAA
CCCTACCGATTGGGTTAAATCGGATTAGTTGAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040094.1\|WP_174708137.1\|2113855_2114878_-\|IS4-family-transposase	unknown	unknown	gnl\|CDD\|376573
NZ_CP040094.1\|WP_174709374.1\|2118543_2119389_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	cmr4gr7	cd09682_cmr4gr7_CAS-III-B	gnl\|CDD\|224255
NZ_CP040094.1\|WP_174709361.1\|2104187_2105750_+\|TIGR03985-family-CRISPR-associated-protein	WYL	mkCas0075_WYL_CAS-I:CAS-III	gnl\|CDD\|274901
NZ_CP040094.1\|WP_174713574.1\|2115209_2115458_+\|four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|274132
NZ_CP040094.1\|WP_174709365.1\|2107748_2108081_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174709372.1\|2116432_2118109_-\|RAMP-superfamily-protein	unknown	unknown	gnl\|CDD\|213662
NZ_CP040094.1\|WP_174709373.1\|2118115_2118544_-\|hypothetical-protein	cmr5gr11	mkCas0065_cmr5gr11_CAS-III-B	unknown
NZ_CP040094.1\|WP_174709370.1\|2115631_2115796_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174709366.1\|2108055_2108634_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174709360.1\|2102830_2104060_-\|CRISPR-associated-protein-Csx3	csx3	mkCas0115_csx3_CAS-I:CAS-III	gnl\|CDD\|370583
NZ_CP040094.1\|WP_174709371.1\|2115834_2116308_-\|PH-domain-containing-protein	unknown	unknown	gnl\|CDD\|367615
NZ_CP040094.1\|WP_174709369.1\|2113523_2113763_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174713573.1\|2109133_2109382_+\|four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|274132
NZ_CP040094.1\|WP_174709368.1\|2112278_2113412_-\|CRISPR-associated-protein	csm6	cd09742_csm6_CAS-III-A:CAS-III-D	gnl\|CDD\|187873
NZ_CP040094.1\|WP_174713572.1\|2101325_2102660_+\|ThiF-family-adenylyltransferase	unknown	unknown	gnl\|CDD\|238760
NZ_CP040094.1\|WP_174709363.1\|2106525_2107254_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174709362.1\|2105779_2106361_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|379122
NZ_CP040094.1\|WP_174709364.1\|2107304_2107739_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174709367.1\|2109513_2110221_+\|CRISPR-associated-protein	unknown	unknown	gnl\|CDD\|187878
NZ_CP040094.1\|WP_174709375.1\|2119577_2120711_-\|CRISPR-associated-protein-Cmr3	cmr3gr5	pfam09700_cmr3gr5_CAS-III-B	gnl\|CDD\|187879

Protein	Function_ID	Function_description	E-value
NZ_CP040094.1\|WP_174708137.1\|2113855_2114878_-\|IS4-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	1.97298e-17
NZ_CP040094.1\|WP_174709361.1\|2104187_2105750_+\|TIGR03985-family-CRISPR-associated-protein	gnl\|CDD\|274901	TIGR03985, hypothetical_protein_sll7078, CRISPR-associated protein, TIGR03985 family. Members of this protein family belong to CRISPR-associated (Cas) gene clusters. The majority of members are Cyanobacterial.	3.37096e-32
NZ_CP040094.1\|WP_174709362.1\|2105779_2106361_+\|HD-domain-containing-protein	gnl\|CDD\|379122	pfam13328, HD_4, HD domain. HD domains are metal dependent phosphohydrolases.	6.7942e-30
NZ_CP040094.1\|WP_174709372.1\|2116432_2118109_-\|RAMP-superfamily-protein	gnl\|CDD\|213662	TIGR01898, repair_system, CRISPR type III-B/RAMP module RAMP protein Cmr6. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This family, represented by TM1791 of Thermotoga maritima, is designated Cmr6 [sic], for CRISPR/Cas Ramp Module protein 6. This family is both closely related to and frequently encoded next to the TM1792 family of Cas proteins described by TIGR01867. The two proteins are fused in an example from Methanopyrus kandleri.	4.46727e-06
NZ_CP040094.1\|WP_174709360.1\|2102830_2104060_-\|CRISPR-associated-protein-Csx3	gnl\|CDD\|370583	pfam09620, Cas_csx3, CRISPR-associated protein (Cas_csx3). This entry is encoded in CRISPR-associated (cas) gene clusters, near CRISPR repeats, in the genomes of several different thermophiles: Archaeoglobus fulgidus (archaeal), Aquifex aeolicus (Aquificae), Dictyoglomus thermophilum (Dictyoglomi), and a thermophilic Synechococcus (Cyanobacteria). It is not yet assigned to a specific CRISPR/cas subtype (hence the x designation csx3).	4.26821e-23
NZ_CP040094.1\|WP_174709371.1\|2115834_2116308_-\|PH-domain-containing-protein	gnl\|CDD\|367615	pfam03703, bPH_2, Bacterial PH domain. Domain found in uncharacterized family of membrane proteins. 1-3 copies found in each protein, with each copy flanked by transmembrane helices. Members of this family have a PH domain like structure.	7.21119e-07
NZ_CP040094.1\|WP_174713573.1\|2109133_2109382_+\|four-helix-bundle-protein	gnl\|CDD\|274132	TIGR02436, S23_ribosomal_protein, four helix bundle protein. This family describes a protein of unknown function whose structure is a bundle of four long alpha helices. Some of the first members of this family were found encoded in the (atypically large) intervening sequence (IVS) of Leptospira 23S RNA, a region often present in the rRNA gene and removed during rRNA processing without re-ligation. However, this location is not conserved, and naming this protein as a 23S RNA protein is both confusing and inaccurate.	4.25261e-18
NZ_CP040094.1\|WP_174709368.1\|2112278_2113412_-\|CRISPR-associated-protein	gnl\|CDD\|187873	cd09742, Csm6_III-A, CRISPR/Cas system-associated protein Csm6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; loosely associated with CRISPR/Cas systems; also known as APE2256 family.	2.52113e-47
NZ_CP040094.1\|WP_174713572.1\|2101325_2102660_+\|ThiF-family-adenylyltransferase	gnl\|CDD\|238760	cd01483, E1_enzyme_family, Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.	1.66229e-20
NZ_CP040094.1\|WP_174709374.1\|2118543_2119389_-\|type-III-B-CRISPR-module-RAMP-protein-Cmr4	gnl\|CDD\|224255	COG1336, COG1336, CRISPR system related protein, RAMP superfamily [Defense mechanisms].	4.28758e-21
NZ_CP040094.1\|WP_174713574.1\|2115209_2115458_+\|four-helix-bundle-protein	gnl\|CDD\|274132	TIGR02436, S23_ribosomal_protein, four helix bundle protein. This family describes a protein of unknown function whose structure is a bundle of four long alpha helices. Some of the first members of this family were found encoded in the (atypically large) intervening sequence (IVS) of Leptospira 23S RNA, a region often present in the rRNA gene and removed during rRNA processing without re-ligation. However, this location is not conserved, and naming this protein as a 23S RNA protein is both confusing and inaccurate.	1.84544e-17
NZ_CP040094.1\|WP_174709367.1\|2109513_2110221_+\|CRISPR-associated-protein	gnl\|CDD\|187878	cd09747, Csx1_III-U, CRISPR/Cas system-associated protein Csx1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Protein of this family often fused to HTH domain; Some proteins could have an additional fusion with RecB-family nuclease domain; Core domain appears to have a Rossmann-like fold; loosely associated with CRISPR/Cas systems; also known as Cas02710 family.	0.00609517
NZ_CP040094.1\|WP_174709375.1\|2119577_2120711_-\|CRISPR-associated-protein-Cmr3	gnl\|CDD\|187879	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; This protein is a subunit of Cmr complex.	4.18531e-11

>NZ_CP040094.1|WP_174709367.1|2109513_2110221_+|CRISPR-associated-protein
MKNYFFQAAKIFFNPETLVPFIIGTIFLSVLGNALTQILFNLFGTTTTAAVGIALGSVLIFMFSVWFLAKSLSKMRSPEIDLGKLPPKKHKGLILLVSRDEPCQRAIDYHLPELEYCWLICSSQSLDLAKKLKQNFPTLKVAEPVVVNDIYDPLEFYQVVKKIYKNLPAGWTIEDAIADFTGMTAQGSVGMVLASLSVQGLLQYTPAEFKDGQPTGYSLNSIEITLKEQFRRGKN
>NZ_CP040094.1|WP_174713573.1|2109133_2109382_+|four-helix-bundle-protein
MTHYLLLIFHGANCSEAKYAQSNKDFINKYSIALKEASETIYWIKIMIKSELVSKSKFQNLIEENEIIIKILTTSINKLKEK
>NZ_CP040094.1|WP_174709366.1|2108055_2108634_+|hypothetical-protein
MQQFKNHPEKISREFVLTLEIIPDERDYKEQIVDARLKWISENDPHNPLKNFSMVDSQCEIDFFVFRQQELEQEKERHIHQLMLELQQELQEIQTDELPELAINLMGPDYLVQDRIQKYREQETRKQEAICHEEVKLIAGRYNSLKQQCEERINQARANYQAAFCIWQEERGWGLGTGEQRGRGAEEQRGKR
>NZ_CP040094.1|WP_174709365.1|2107748_2108081_+|hypothetical-protein
MLEDNFNQFEETPQDVYIQTQGEMLNEIEGIHDSKPNKEALAISVSLSIIEAAVAFYMIASAGVLIAAMVSLFPVALLWAIANHHAEKVELPEAYDELVEKYYATVQESS
>NZ_CP040094.1|WP_174709364.1|2107304_2107739_+|hypothetical-protein
MTAKISPKRIERLERWLKIMPRTLLRMPDYDRANIIAAIKEYAKFNLANSQIAKYDAVRSRRLSRNQRQITQFIVILAGSLTFSVAPQLLAKQAGRGPWAISAGLLGGGLASFYAHSNATKVLTGIKLKNSTQNNRKAILERKN
>NZ_CP040094.1|WP_174709363.1|2106525_2107254_+|hypothetical-protein
MKYSLRKQSKKGSTISFEQVQQEPPLWKSPLTWLCAAGGVLLIGIPLVMDNVTHRVNSAFLVDISLSNQPYQTSLEALCRQYVEHLVEGDVRILGKFADRAIILSNQEFQERDRLSIQNQCKYITTQPSGIGRVPGTSLIDALSRLETEIGHQQSQDNTRPVAAVVVIQAAELVNHQQQDFTVIKSKIEAIIHKGGALAIIGPDVDLQNQLSSQLSSVKNTQICTYSDGQACLDWLFQIGRK
>NZ_CP040094.1|WP_174709362.1|2105779_2106361_+|HD-domain-containing-protein
MNLNSINKPKLTIRFEEALVYATQLHTEQVRRISGVPYISHLLSVTALVLEDGGSEDEAIAALLHDAIEDQGGRRTGEIIRQKFGDKVADIVESCTESDAVPQPPWKERKQKYLENISQGSPEVLRVALADKVHNARSNLSEWYLYGEKAWNKEQRQRTLWFYRSVIEVAQTLIDSRLLEEFRRIVQQLEAIE
>NZ_CP040094.1|WP_174709361.1|2104187_2105750_+|TIGR03985-family-CRISPR-associated-protein
MSANSTQIFDYPPTVELLRSFLPSKAVLLEEKALKKAWRIYIYLKTIYGDGISLGNDKYINSPLAGKLASYEFSFLDWLSELEVCLLNQIPKQLNQAKGNSNSNKKQQKAEEREKAKENICLLQQLTIEDIWYQMFYLQAERDKWIDDFKYFYKISETEIQHLLQLRPFDSQGDNFTNQTRLYRLDFQISLANAEKNHWLKAIYDSEQKLTGNYFKVDSWLQLIPESLEKNNHQQFNNEVNSEYINNEELADFITRFANNTQKRLLFTAEFIMSANIKKQKYNALINTLELNWSKSDSVKPLKITYKKFQTSRVITTIIFPVIFYYIKRGPYLYAIRPTEFEDENYYWEGYRLDRILDVEILDWDNEQIPVKLRELKDENQLPTPEDVEDSLDADTLGYAFWKTQKMMFVRFERNHYRNYIQDTSRQKIFKEINFQNFQELNSDLERFFNNKEITLILQSLRGQINEKYVFCIAKFYEEDIDVFLRILIWGKNVKVILPFELKDKIFQEIQSTMKQYQEK
>NZ_CP040094.1|WP_174709360.1|2102830_2104060_-|CRISPR-associated-protein-Csx3
MTLKLICEYDAQEQPYQKIEIPYENQLPAEILKKLDLPKGIDFNYGVVIDGKAPNWLYSNLAYQCRNAAWVSCYYPQLQGAIVVYSQTPTVKVGQIQGSTKNNLLNGNLELKVNEVITVDGDRYQCLIIHAVDISPQALDSLTLPSDLNWNREIVLWGQAPVWLYTHLVMRCQQALWIACYNIRTTEAVVVVSQCPELVPGDKFKLVPKSPCPAIVFGGPPNSGKSLLAYTLKQTLVNMGWNNKVYLHRTTWDGEGDWFAQMMGTNPELANKLSEIAGRWKKPENPAEYFSQQAEVIKEIRKYTDLVLVDLGGIPREADQILLPSCSHYVIISNSLEEVAKWHKFFQTLNTDTQEQLIPLTVIHSVKENKLEILNREPYLEMIAGPWRYGETETVPQELVEEVIKLIRE
>NZ_CP040094.1|WP_174713572.1|2101325_2102660_+|ThiF-family-adenylyltransferase
MWQQFRQSMLKSRTMNEEVIGFFFCKRQQISKNKIRYIPKAWVVPLSDCYEDQSASGLVLTQKFHWYLLKNYLNQGLHVVHIHTHTGDVSPDFSFVDDRYESEYSRFIASSFPKKPRLISGVFDESLQQSQFRIWDRKGQSYQSIKCYQSWLELSENRELLDNLNLQNNVESMFVRQKIFGNSCQKQLNELKVTLIGCGGIGSIFAELLGRLGVKNWVLIDPDRLETVNLNRMPGATQKMADQRWYKVDYVKYFIKKIYQTGSCVKTIPTSIEHELAKQEIVSSDLIVVATDNHLSRQVAQELALEYMRPLVCLGTHIDIKKYDNTPRMYCRVTVPPLGGGWCLMCGNIINLQRAALESAPIEINQIAANAGYLEGIDDPSVFWLNSICASTGVGIIHGMVSGFINLDAGIDWIYEFPGSVWHKTNIEHLETPDCYFCSSALFG
>NZ_CP040094.1|WP_174709368.1|2112278_2113412_-|CRISPR-associated-protein
MRKVIISTIGTSLLTNQINRANPDEKDWYSRLRDTANLNEDKTPEDVKQIIAILKQRSDEQLSGAKISQIRRASAELNGIYGIYQDNLSQGKEDIHFLIATDTSQGKTTAKIVEDFLRKQGLNNTSTFAPSGLSTASTEAFSLGIDALIVWLQDTIPQLKRDKYKIYFNLVGSFKSLQGYLNTIGMFYADEIIYIFEGEKSDLITIPRLPIAVDVSLIKPYARQLALLDAGAGLSASETVGIPEAMLAEIDEQMTLSTWGQLIWNQCKEDLLSEDLLSFFNLEYQDSFEADYKKVKDKQQRVKLQETLAKVSYLLEDSGGDTTILKKHGGLQYDKYTNMGDIDHFRVTQGVRVSCRSSQEKLILYRYGKEEEVNKNP
>NZ_CP040094.1|WP_174709369.1|2113523_2113763_-|hypothetical-protein
MVIQFYFINNSYLLITYYSLLITHYLKNAKNNFSHCKFYSARIVHDFLTPEKVQNQHASPELDVSDEQLDIDDDDFDDN
>NZ_CP040094.1|WP_174708137.1|2113855_2114878_-|IS4-family-transposase
MIINSFPKIVKDILKSLPKNDYPVLNSRLFFECWLSYALDNSLTSMRDLFNRLNNNCFEVDISTFSKANLHRSQKPFQEIYQKLNELVQKKVQKKLHNKYAICPIDSTIITLTSKLLWVLGHHQVKLFSSLNLSTGSPEDNFINFGHDHDYKFGSKMMSSLPINAVGVMDRGFAGLKFIQELVQENKYFVLRIKNNWKLEFDGSNGLVKVGASDDAQAYRVINFCDLETKTEFRLVTNLPESGDAAVHDDEIRDIYRLRWGVELLWKFLKMHLKLDKLITKNVNGITIQIYVSLIAYLILQLLSIPEQWGHTLLDKFRYLQSCMCQKISYVHWFEEMMFC
>NZ_CP040094.1|WP_174713574.1|2115209_2115458_+|four-helix-bundle-protein
MTYYLLLIFHGANCSEAKYAQSNKDFINKYSIALKEASETIYWIKIMIKSELVSKSKFQNLIEKNEIIIKILTTSINKLKEK
>NZ_CP040094.1|WP_174709370.1|2115631_2115796_-|hypothetical-protein
MPSDTSFGWNFNSSYESTTEESLQRIEEQCDRQTESFLWGAYKVEEVDCPELGC
>NZ_CP040094.1|WP_174709371.1|2115834_2116308_-|PH-domain-containing-protein
MISPAAESGILSFHPSLFKIIVERFLWNLLLIIFGWTILPLPYLYWKFLQIRSTNYILTTQRLITKTGVFWKEVNFIELYRVLDIKVERGLLYQFLDLGRTCLGKKPLLLGDIRIFSSDYSHSKLFLFTIPNALGVAEKIRKAFNDDKDTKRVMRRD
>NZ_CP040094.1|WP_174709372.1|2116432_2118109_-|RAMP-superfamily-protein
MTVIPDAAKKVPMMFRAQINGRCQIQRLVPGADEQDAIRWADEWVDKAYPNLPELSSEVQTRTYTLTWRFITNSGQDEGVIRPVIGARGWPFYPGSSMKGIFRRACTKEQAELYCGKTLPGGEVEPGILRFHGGYPTDTAWTENLVDIVHPQQNWQVKNGNKESGAFIQISLYKPELRFGISSNAKDVDWQTVWSIWEKALSTGIGCRVCAGYGQPQHHTGNIIYQGRIKGQGQAAKLIDGTGEFRANVFRAALRGHALRIFGGLTNADMADRIVNNLFGSVQGKGNIGLLGMSFRDSRLEIDTFGRGSYAQPTYNVEGELVWLLASQLANSQQEDVLKKLVADLTRFAMLLGGFGKSWRRADHRLFYEEYYEEGYKPLIGCHWQWLGERSLIRDVQVRKLEQVGEFIDKVQQTAQDWMQLQGITPNPAQTTSWREAWHPQNVQVWGRQASEREDSEAIFWLHGPYQEAISRLQPEGSIYRSSITGQMGQIGRLWHRMYPLVRLVKDPKNPNKPIPKITPGYLELLTLFPDDSPESKQFVQFLNSQQNRPKGFEKLWP
>NZ_CP040094.1|WP_174709373.1|2118115_2118544_-|hypothetical-protein
MTCKSDKPEKETGWKSYELDRKAQKLVLAAKERDEKSLNQSYKMRMAVAYGLERFWGEHLRLEGKEREKSQYWKETWDALVAVMAEAGVEIPNDSVKVNNTGDIQKMSDKLWQLDIADQRVALAVLTQLCDCIVWWTQRYKG
>NZ_CP040094.1|WP_174709374.1|2118543_2119389_-|type-III-B-CRISPR-module-RAMP-protein-Cmr4
MYKKAYGTIETLAPLHVGASAGEETGNLNLIFRDQFTQTGIIPGSSIRGRFRADMRSHEPGMENTWYGHQASLSGAENTTTEALVKFEYASLVWLPVFCPGQPIVWVTCPWLLKRYQQITGQPTVKDEENQSKPAPLPKPYTAPKALQGRQVDTNRKVLFFNLGFIEIKHEDNLSGWIPTGSNLNPDNLVVVDNNDIAMLHDMALYRQSRVKLADNEKKVDGGAFFNVEALPEGSILIFPIALKETGWKPFGNDAADELYFGGLESIGFGRCQVTLGGAYQ
>NZ_CP040094.1|WP_174709375.1|2119577_2120711_-|CRISPR-associated-protein-Cmr3
MSAVEIADGSSSSNSTAESLFKYLVVIEPLGFLYGSAGRFLSPDNLVGRSGTSFPPSAASLSGLFSATYTQEEPDKEKLKAKIEPLHFAGPFWAKSDSPQNFYVPTPFNCLVEKGAENITYQLSWNGEKWQSQIEQLLSGKFESGSWIAIKDWNEKKWVEKKVWVEKKNDRLVPWKPIPHLHPQLREDERRVKIEKLADGSERGSLFLENGVQLDPDYCLVYLCNDKVNDGWYRFGGEGHMVDVRCLPLDEHLQQLLTQDVGKSFALITPAIWGSNRLSTRYPAVWDCDRYLETLLTERPHPFRYRLGGEGKTKRLSRGRYAIPAGTVYVMKTPLKAWQSWDVQWFPKEGPSLKRWGCGLALPLPSALGYTPPEAIA

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Crispr_ID: NZ_CP040094_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040094_11

2219953-2220055

Orphan

N:A

Consensus_repeat	Method
GGGACTGGGGACTGGGGACTGGG	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP040094_11

>merge|NZ_CP040094|11|2219953-2220055|CRISPRCasFinder
ATCTTTAGGGACTGGGGACTGGGGACTGGGACTGGGACTGGGGACTGGGGACTGGGGACTGGGACTGGGGACTGGGGACTGGGACTGGGGACTGGGGACTGGG

>NZ_CP040094|11|10|2219953-2220055|CRISPRCasFinder
ATCTTTAGGGACTGGGGACTGGG	GACTGGGACTGGGACTG
GGGACTGGGGACTGGGGACTGGG	ACTGGGGACTGGGGACT
GGGACTGGGGACTGGGGACTGGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040094.1\|WP_174709441.1\|2221618_2221828_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174709434.1\|2204238_2204931_+\|PIG-L-family-deacetylase	unknown	unknown	gnl\|CDD\|225031
NZ_CP040094.1\|WP_174709435.1\|2212202_2214413_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|226428
NZ_CP040094.1\|WP_174709433.1\|2203543_2204233_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_CP040094.1\|WP_174709444.1\|2224232_2224874_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP040094.1\|WP_174709442.1\|2223105_2223849_+\|toll/interleukin-1-receptor-domain-containing-protein	unknown	unknown	gnl\|CDD\|379328
NZ_CP040094.1\|WP_174709443.1\|2223878_2224202_+\|toll/interleukin-1-receptor-domain-containing-protein	unknown	unknown	gnl\|CDD\|379328
NZ_CP040094.1\|WP_174713584.1\|2221944_2222841_+\|ROK-family-protein	unknown	unknown	gnl\|CDD\|224851
NZ_CP040094.1\|WP_174709432.1\|2202659_2203367_+\|WbqC-family-protein	unknown	unknown	gnl\|CDD\|378083
NZ_CP040094.1\|WP_174709440.1\|2220111_2220516_-\|four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|183395
NZ_CP040094.1\|WP_174713581.1\|2201165_2201651_+\|acyltransferase	unknown	unknown	gnl\|CDD\|100053
NZ_CP040094.1\|WP_174713582.1\|2210388_2212089_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|226428
NZ_CP040094.1\|WP_174709437.1\|2215732_2216275_-\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|226975
NZ_CP040094.1\|WP_174709438.1\|2216697_2218029_-\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|316372
NZ_CP040094.1\|WP_174709445.1\|2225496_2226000_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174713585.1\|2227922_2229179_+\|glycoside-hydrolase-family-10-protein	unknown	unknown	gnl\|CDD\|224563
NZ_CP040094.1\|WP_174709436.1\|2214531_2215086_-\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	unknown	unknown	gnl\|CDD\|374761
NZ_CP040094.1\|WP_174709446.1\|2226670_2227813_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174713583.1\|2220646_2221543_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224094
NZ_CP040094.1\|WP_174709431.1\|2201634_2202663_+\|DegT/DnrJ/EryC1/StrS-family-aminotransferase	unknown	unknown	gnl\|CDD\|99740

Protein	Function_ID	Function_description	E-value
NZ_CP040094.1\|WP_174709434.1\|2204238_2204931_+\|PIG-L-family-deacetylase	gnl\|CDD\|225031	COG2120, COG2120, Uncharacterized proteins, LmbE homologs [Function unknown].	3.85449e-30
NZ_CP040094.1\|WP_174709435.1\|2212202_2214413_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|226428	COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones].	0
NZ_CP040094.1\|WP_174709433.1\|2203543_2204233_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	8.60952e-14
NZ_CP040094.1\|WP_174709444.1\|2224232_2224874_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	6.86059e-22
NZ_CP040094.1\|WP_174709442.1\|2223105_2223849_+\|toll/interleukin-1-receptor-domain-containing-protein	gnl\|CDD\|379328	pfam13676, TIR_2, TIR domain. This is a family of bacterial Toll-like receptors.	2.78867e-18
NZ_CP040094.1\|WP_174709443.1\|2223878_2224202_+\|toll/interleukin-1-receptor-domain-containing-protein	gnl\|CDD\|379328	pfam13676, TIR_2, TIR domain. This is a family of bacterial Toll-like receptors.	1.96477e-11
NZ_CP040094.1\|WP_174713584.1\|2221944_2222841_+\|ROK-family-protein	gnl\|CDD\|224851	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism].	1.96981e-74
NZ_CP040094.1\|WP_174709432.1\|2202659_2203367_+\|WbqC-family-protein	gnl\|CDD\|378083	pfam08889, WbqC, WbqC-like protein family. This family of proteins are functionally uncharacterized. However it is found in an O-antigen gene cluster in E. coli and other bacteria suggesting a role in O-antigen production. Feng et al. suggest that wbnG may code for a glycine transferase.	7.00037e-83
NZ_CP040094.1\|WP_174709440.1\|2220111_2220516_-\|four-helix-bundle-protein	gnl\|CDD\|183395	PRK12275, PRK12275, hypothetical protein; Reviewed.	1.13852e-39
NZ_CP040094.1\|WP_174713581.1\|2201165_2201651_+\|acyltransferase	gnl\|CDD\|100053	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.	1.05416e-21
NZ_CP040094.1\|WP_174713582.1\|2210388_2212089_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|226428	COG3914, Spy, Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones].	2.91756e-62
NZ_CP040094.1\|WP_174709437.1\|2215732_2216275_-\|methyltransferase-domain-containing-protein	gnl\|CDD\|226975	COG4627, COG4627, Uncharacterized protein conserved in bacteria [Function unknown].	1.66693e-49
NZ_CP040094.1\|WP_174709438.1\|2216697_2218029_-\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|316372	pfam13847, Methyltransf_31, Methyltransferase domain. This family appears to have methyltransferase activity.	5.23438e-33
NZ_CP040094.1\|WP_174713585.1\|2227922_2229179_+\|glycoside-hydrolase-family-10-protein	gnl\|CDD\|224563	COG1649, COG1649, Uncharacterized protein conserved in bacteria [Function unknown].	3.18077e-148
NZ_CP040094.1\|WP_174709436.1\|2214531_2215086_-\|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein	gnl\|CDD\|374761	pfam16734, Pilin_GH, Type IV pilin-like G and H, putative. Pilin_GH is a family from Cyanobacteria. All the proteins are putatively annotated as being general secretion pathway proteins G and H, and are likely to be pilins of the type IV secretory pathway.	2.06563e-33
NZ_CP040094.1\|WP_174713583.1\|2220646_2221543_+\|ABC-transporter-permease	gnl\|CDD\|224094	COG1173, DppC, ABC-type dipeptide/oligopeptide/nickel transport systems, permease components [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.5752e-79
NZ_CP040094.1\|WP_174709431.1\|2201634_2202663_+\|DegT/DnrJ/EryC1/StrS-family-aminotransferase	gnl\|CDD\|99740	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein encoded by gene pglA, is a galactosyltransferase involved in pilin glycosylation. Additionally, this CD consists of ArnB (PmrH) aminotransferase, a 4-amino-4-deoxy-L-arabinose lipopolysaccharide-modifying enzyme. This CD also consists of several predicted pyridoxal phosphate-dependent enzymes apparently involved in regulation of cell wall biogenesis. The catalytic lysine which is present in all characterized PLP dependent enzymes is replaced by histidine in some members of this CD.	4.03762e-81

>NZ_CP040094.1|WP_174709438.1|2216697_2218029_-|class-I-SAM-dependent-methyltransferase
MTSPASNLLDKIRQQFDTSPYPIVPLDKSPKDNPNLLYIHNLVTPYYLRNQKFIDTKDKVILDAGCGTGYKSLVLAEANPGAKVVGIDISEESIKLAQQRLEHHGFDNAEFHVLSLQELPKLDYQFDYINCDEVLYLFPDLATALQGMISVLKPNGIIRSNLHSSIQRFPYFRAQKVFTMMGLMDENPEDLEMGIVVETMKALKDNVELKARTWNSNKYEGENGKEGILMNYLFQGDKGYTISDMFMALKAADLEFISMVNWRQWDLINLFKDPENLPAFLDMSLPEISIEERLQLFELIHPIHRLIDFWCGHSNQVQNFLLVSQWADSDWQFAKVSLHPQLKTRNFQEDLITCITEFKIFPISNYLSLVEEFVGIDSSLALCLIPLLEQTQPMKFLVEHWKKFRPLDPVTLKPTDEEQAFQMVQQLLLMLESFGYIMLERQS
>NZ_CP040094.1|WP_174709437.1|2215732_2216275_-|methyltransferase-domain-containing-protein
MKDIKLHIGGEKKHPDWKIFDIEPRPEVDYIGNASDLSQFENNSISAIYASHVLEHFYHRIDNELMNTLTEWYRVLKPGGQLFISVPDLKKLCWFYLHPEFTVVERLHIMRIMFGGQTNIYDVHKVGFDFEILSICLEEVGFTQYEQVETFDMFDDCSTIRILNTLISLNVIAQKSTSSE
>NZ_CP040094.1|WP_174709436.1|2214531_2215086_-|prepilin-type-N-terminal-cleavage/methylation-domain-containing-protein
MKTELKAKFLQHLLGKKKENEGFTLIELLVVIIIIGILSAIALPSFLNQANKGKQSEAKQYTGSMNRAQQAYFLENAKFTTSMDQLGLGIRTQTENYAYAVNGGDTEVANNGISLKPVLKSYQGVVIKSIVLSTSEATTLAVLCQSNAVGDQSGTIGTFGPAGTSAGTPLQPGCNTAYSELTSK
>NZ_CP040094.1|WP_174709435.1|2212202_2214413_-|tetratricopeptide-repeat-protein
MTSVQIPNDISPSEQQAQQYFTKGNYAQAANCYEQAIEIEPEVKSHYWNLGLMLLLQGQEAEAQMTWLLGMEEGEAQEVEQWTVELIQVLQTEAERRETLADYSVAWAIRQHIREISPQYVNNLLYLIELSIKQETFSGDELTSLEIIELIQSEEIIDIELLLQVLDSIINDDPLHPSILEFAEACLIHIDQSQPFINILLPAAVKVAHSMRQPQVAVLMTELCLRLEPEKIELLRHLAAFYFKDRNYSKGIEVAKLCYLLSKTITDKLFAKHLIQRGLMEAPAYWNEACAVFLEQESLLMSLIEEQPTNLEAFTILWLFNTNYYAPYLRDDPHQNRQIQNQLVQLCQLNVQEYAKEKVQRYGNRELVRRTKQIKIGYLSHCLSKHSVGWLARWLIQHHNREKFDIYGYFINYKQVDDPLQEWYVQQFTQAYQGGIYSDDIAEKIYEDEIDILIDLDSITLDITCEIMALKPAPVQATWLGWDASGIPAVDYFIADPYVLPESAQEYYTEKIWRLPQTYIAVDGFEVGVPTLRRDSLDIPTDAVVYLSAQRGFKRHPNTAQLQMRIIKEVPNSYFLIKGLADSEAVQKFFMQLAEQEGVDSSRLRFLQLDPSESVHRANLGIADVVLDTSPYNGATTTLETLWMGIPLVTRVGQQFAARNSYTMMMNAGITEGIAWTDEEYVEWGVRLGKDEALRQQVTLKLKASRQTAPLWNAKQFTCEMEKAYEQMWQRYIEKK
>NZ_CP040094.1|WP_174713582.1|2210388_2212089_+|tetratricopeptide-repeat-protein
MHVEQLVFDLSNRLFQEGRWTEAIAQYQKILEIQSGDADIYYNLSYCYRQLNLLDEYFKTLQQGIKLYPQEGRLHFSLIIDLRRNGRIEEAILSAKNAAKCLPNDYTFQILKYLTVPSIYENQEEIKFYRQRFTQGLQDLIQQTYLKTTEEQQSALAGIGRLTNFYLSYQAQNDIDLQRQYGKLVHEIMAANYPQWVVPLSMPKLQPNQKIRIGYASHYLHSYSGTLWLTGWLRYCDRQNFEIYCYYTGDEPDPVTQQFQNYSDVFHYIPYNLSAACEQIIADKLHILVFPEIGMDAQTMQMAGLRLAPLQCVAWGHPVTTGLPTIDYFLSSELMEPENAQEHYSEKLIRLPNIGVSYPKPYIPPVIKTRSDFGLGDDAVIYLCCQAPFKYLPQYDFIFAEIACRLPQAKFVFLRGTLLEPRLKRAFAAVGLNSEDYCVFLSIPERLDYLMINLLSDVYLDTFTWSGGNTTLEAIACNLPIVTCPGEFMRGRHSDSFLKMLGVTDTIAQNEAEYIEIAVKLGLDQAWRGAIAERMSQNHDRLFDDKACVAGLEAFYREVCSKHFSA
>NZ_CP040094.1|WP_174709434.1|2204238_2204931_+|PIG-L-family-deacetylase
MRKRVLVIAAHPDDEVLGCGGAIAKHTQQGDIVHVLILAEGATSRTPQRDRKKLQNELSTLAKAAHQASEILGVTSLKLHDFPDNRMDSCDLLDIIKVIEQEIVKYQPEIIYTHHIGDVNIDHRRIHQAVVTAIRPTPGSTVKTLLFFEVASSTEWQTPGSAPAFTPNWFVDISQTLSLKLEALAAYEFEMRSWPHTRSISALEYLARWRGASVGVEAAEAFILGRRLIS
>NZ_CP040094.1|WP_174709433.1|2203543_2204233_+|class-I-SAM-dependent-methyltransferase
MTEKYRIDNGFSQEWDQIYQQNTHMSVWPWSDLVSYVIRYARPSKSEFHVLELGCGAGANIPFFQKLGVEYHAIEGSPAIVEKLKEKFPDIENNIVVGDFTKNIPFSNEFDLVVDRSSLTHNTTSAIKNSLALAYAKLKIGGRYVGIDWFSTLDSDYQLGIPDEDIYTRRDYTEGHFAHVGRVHFADKGHLEELFAAFAIEVMEHKTVARYIPTDNHILAFWNLVARRV
>NZ_CP040094.1|WP_174709432.1|2202659_2203367_+|WbqC-family-protein
MILTAHQPVYLPWLGLIHKILLADVFCVFDIVQYQKKDYNNRNKIKTDSGEMWLSVPVESKDHFNKKICDIKIINDGWNRKHFKSIYLAYKKSAYFDLYIDSLEVILIKKEYKYLTELNFDILTFMLKSLDIDVPIIKASDYDFTGYKSELVLDMCVKLNVKKYIFGSQGRDYANIQSFKNNGIEVYFQDYKHPIYKQLHGNFVPYMSLIDILFNEGPKSKEIILFNNVLSLAQI
>NZ_CP040094.1|WP_174709431.1|2201634_2202663_+|DegT/DnrJ/EryC1/StrS-family-aminotransferase
MIPHNKPTLGIEEEQAALRVIRSGWVAQGDEVEAFENEFCEFIGLPVGYAVAVASGTSALFMALWALQAQGKRVAFPVYTCSSLRHAVAMIGAIEQLVDVSPGTPNIDLQALSQTRADIAIVPHMFGLPLCVSNLKNIEIIEDCAQALGASVNGTFVGLQGKLGIFSFYATKLITSGGQGGMVVSKDKALIDAIKDYRQFDCRQDKNKRFNFQMTDLQAAIGRAQLRKLPIFLSRRVEIFKRYIQAGLKLLDITSESNIQLSPVRYRAILKTNASSNRNIIELLASMNIKVIVPIEHWELLEEYNLFPNALKLSQESISLPIYPLLTDKQLEYVVSKINFLS
>NZ_CP040094.1|WP_174713581.1|2201165_2201651_+|acyltransferase
MWRFRVIDITKFQELFSLLTSFKPNQFHPLVWINGEPEIGKNVYIGGMSEINAKGARVIVGDNCDIASFVSINCADSHKKCIGLLDEIQRKDIVIENNVFVGSHSVIKGGAYIGHNSVVAAGTIVEEAIIPPYSLIIGNPMQVKPGYYLKQFHLNDSDSTQ
>NZ_CP040094.1|WP_174709440.1|2220111_2220516_-|four-helix-bundle-protein
MQHRGFESLDFYQDSLKLLKAAYRLANSLPGCERYNLSDQLRRAACSVLLNIAEGYGRYHYLDRLRFMYIARGSLTETKSAFIIAESLGYCNTEQLNWVSQLKDRIEKGLNGYCHFIRSQQQGKEEYGTQLGKW
>NZ_CP040094.1|WP_174713583.1|2220646_2221543_+|ABC-transporter-permease
MAITKRQLPTFLQFGKSSNLSQKLMLIGLAITLFFIFLAFFAPLFQAWGWLQNPKDFLSNPIHEPPSAKHWFGTSRLGYDVFSRTLFGAQAALQVVILATALSMIIGVPLGMLSGYLGGKLDKVLLFLMDSIYTLPGLLLSVTLAFVVGRGILNAAIAISIAYIPQYYRVVRNHTVSVKTEVFIEAAQAMGASTWVVLSRYLFFNVIQSVPVLFTLNAADAILVLGGLGFLGLGLPEEVPEWGHDLKQALEALPTGIWWTTLFPGLTMTFMVVGLSLLGEGLNEFVNPRLRRENRIRK
>NZ_CP040094.1|WP_174709441.1|2221618_2221828_+|hypothetical-protein
MKDNLTLIAAATGGFILSVALAGILRGAPVTAWQEQSSFRTTTFANLQKSELKASRLLPGGDATQTDRG
>NZ_CP040094.1|WP_174713584.1|2221944_2222841_+|ROK-family-protein
MVSSQVIGIDVGGTAIKLGRFTADGTCLQSLTMAAPQPTTPEAVLAVLVDAIAQIDPNNETFAIGVGTPGPSDAAGRIAKIAINLPGWIDVPLADWLEAKTGKPTAIANDANCALLGEAWLGAGRQFQNLILLTLGTGVGGAIILDGKLFIGHQGAAGELGLISLNPNGPICNSGNQGSLEQHASATAIRRRTLKEPIELGVLAQQGEAAALTFWQDYGKDLGIGLTSLIYVLTPQAIVIGGGISGSFEFFLPAVKAEIEKRVQALSRDGLQILPAELGNFAGIVGAARLALQHYSRF
>NZ_CP040094.1|WP_174709442.1|2223105_2223849_+|toll/interleukin-1-receptor-domain-containing-protein
MSNAVKVFFSYSHKDEALRDELATHLSMMKRQGVIEAWHDREISAGREWANEIDDNLDIADIILLLVSANFLASDYCYDKEMTRAMERHETREARVIPIILKPADWNGAPFGKLQALPKNAKPVTTWQDQDEAFLNVAQGIRRVVEEMAKSNTSSSTPAKNTTPATSSPSATSGVLTERQHQRWEQERDSVQERYDLVSKKLGLLGKAYAIETDVSTKLKLEVQIQDTETEQNRLNRQLEEIEQKLL
>NZ_CP040094.1|WP_174709443.1|2223878_2224202_+|toll/interleukin-1-receptor-domain-containing-protein
MPPIKSIDVFISYHQKDEELRQEFEIHLASLRRENIITSWNDRKIVAGQEIKGEIDEHLNQAGLILLLISPDFMNSDYHWTVEVTRALEQNATKKACVIPVLLRYTD
>NZ_CP040094.1|WP_174709444.1|2224232_2224874_+|tetratricopeptide-repeat-protein
MPSNRKPIKSWSDRDEAFLEVVKGIREAVRFVANSNSSPPKQTTQELEERQYQVTSLINEAARLYEAKKFEEAAVKFKAALRLDPNSVLGHTALGLALYGQGKLSEAIATYQRALLIDSNYAIAHYNLGLALYGQGKLSEAIAAYQRALLIDPNYANAHCNLGIALKGQGKLEEAIAELEIAVRLNPSSTLFRKNLEIYRNEKKGVWGRLFGG
>NZ_CP040094.1|WP_174709445.1|2225496_2226000_+|hypothetical-protein
MIGLNNSEKDTVSSTASTKRLARAMMVSGGEFSLILACCNSVERQQQVLNLLTEFSSTDIHEILLSPAADTLYTAITSAIGATQPEALMVRGLESVVEINQLIISANIMRNEFRKQFRFPLMLWVNDEILRKLVWLAPDFKDWAASTIRFDVPHNQLVESEQRAISA
>NZ_CP040094.1|WP_174709446.1|2226670_2227813_+|hypothetical-protein
MKTMLKKYLNTNQARIFTALILTGILSVTSSLTLIKDATGASANLSLETNNEVLKDNIKPNRLPRPVAKAVLRDLARKQGIFTSQLQIIDYSQQTWRNGCLELPQSDEICTQALVPGWRIVVSNGKKNWVYHTNNNGRSLRLASANTPSNNLPDELPASVKNAVLQAASRRLQQPISQLTIIQVQSQTWRDSCLELANADEFCTQALVSGWRVVVGAVDQTLVYHTNQTGSAVRLNQKANEGTLSPVQIPASELPPPLDRDIVFRQISSGGFAGRTYQTVLLKDGRLIRVRIGDANDSERSVRSVSVQQVQQFQRYLERSNFSKFQNLSYPAPSGAADYITFTLTSQKGTVQYNDISRNNLPTNLQAAVKAWNQLVASAQ
>NZ_CP040094.1|WP_174713585.1|2227922_2229179_+|glycoside-hydrolase-family-10-protein
MKRFIKWCVDHSWWNIRQSRKSGLFAVIVTLSVVATVMLSFPLNAQINLPPKLASELRGVWLTNIDSDVLFERDRLKGSLQRLDELNFNTIYPAVWNWGYTLYPSKVAQKVIGRSLDPTPGLQGRDILKEIVDVGHQKGLTVIPWFEFGFMAPADSLLAKNRPQWLTSRSDGTRIVQEGTHNRVWLNPFRPEVQQFIQDLIVEIVRNYNIDGIQFDDHFGLPSELGYDAYTVALYKKEHRGKAPSKNFRDPEWVRWRANKITEFMKRVFKTIKATKKDCLVSIAPNPQRFSYEFFLADWQKWERLGIVEDLVLQIYRDDLNVFVNELEYPEVKAAKRHIPVSVGILAGLKNRSVPMQQIQTQVQKIRDRNFAGVSFFFYESLWNMGKEKPQERQTGFQKVFPTPVAYPNLLAGWKPFS

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Crispr_ID: NZ_CP040094_12

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040094_12

2397888-2398023

Orphan

N:A

Consensus_repeat	Method
CTTTGCTGCAACGGCTTATACCTTTGCAAGAAATGCTTAAGCGTTTCTTATA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040094_12

>merge|NZ_CP040094|12|2397888-2398023|CRISPRCasFinder
CTTTGCTGCAACGGCTTATACCTTTGCAAGAAATGCTTAAGCGTTTCTTATATATGGAGGATCAATTGTTGCAAAGTATGAATGCTTTGCTGCAACGGCTTATACCTTTGCAAGAAATGCTTAAGCGTTTCTTATA

>NZ_CP040094|12|11|2397888-2398023|CRISPRCasFinder
CTTTGCTGCAACGGCTTATACCTTTGCAAGAAATGCTTAAGCGTTTCTTATA	TATGGAGGATCAATTGTTGCAAAGTATGAATG
CTTTGCTGCAACGGCTTATACCTTTGCAAGAAATGCTTAAGCGTTTCTTATA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040094.1\|WP_174709556.1\|2393212_2394016_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223377
NZ_CP040094.1\|WP_174709552.1\|2382519_2384247_+\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274311
NZ_CP040094.1\|WP_174709557.1\|2394068_2394788_-\|4'-phosphopantetheinyl-transferase-superfamily-protein	unknown	unknown	gnl\|CDD\|225002
NZ_CP040094.1\|WP_174709551.1\|2376888_2382282_+\|acyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|274311
NZ_CP040094.1\|WP_174709566.1\|2409726_2411307_-\|apolipoprotein-N-acyltransferase	unknown	unknown	gnl\|CDD\|234721
NZ_CP040094.1\|WP_174713592.1\|2395241_2396426_-\|formylglycine-generating-enzyme-family-protein	unknown	unknown	gnl\|CDD\|224182
NZ_CP040094.1\|WP_174709561.1\|2402908_2403052_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237414
NZ_CP040094.1\|WP_174709559.1\|2400057_2401644_+\|B12-binding-domain-containing-radical-SAM-protein	unknown	unknown	gnl\|CDD\|379101
NZ_CP040094.1\|WP_174713593.1\|2397209_2397635_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174709565.1\|2407372_2407750_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174709562.1\|2403169_2404213_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|223135
NZ_CP040094.1\|WP_114080277.1\|2398157_2399321_+\|DNA-polymerase-III-subunit-beta	unknown	unknown	gnl\|CDD\|235541
NZ_CP040094.1\|WP_174709560.1\|2401878_2402919_+\|DUF2891-domain-containing-protein	unknown	unknown	gnl\|CDD\|378592
NZ_CP040094.1\|WP_174709555.1\|2391128_2392643_+\|thioester-reductase-domain-containing-protein	unknown	unknown	gnl\|CDD\|225857
NZ_CP040094.1\|WP_174709564.1\|2406175_2407180_+\|transaldolase	unknown	unknown	gnl\|CDD\|183426
NZ_CP040094.1\|WP_174709558.1\|2396827_2396974_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174708235.1\|2408251_2409318_-\|ISKra4-family-transposase	unknown	unknown	unknown
NZ_CP040094.1\|WP_174709553.1\|2384491_2389243_+\|PfaB-family-protein	unknown	unknown	gnl\|CDD\|225858
NZ_CP040094.1\|WP_174709554.1\|2389449_2391126_+\|PfaD-family-polyunsaturated-fatty-acid/polyketide-biosynthesis-protein	unknown	unknown	gnl\|CDD\|240093
NZ_CP040094.1\|WP_174709563.1\|2404454_2405885_+\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|223545

Protein	Function_ID	Function_description	E-value
NZ_CP040094.1\|WP_174709556.1\|2393212_2394016_+\|SDR-family-oxidoreductase	gnl\|CDD\|223377	COG0300, DltE, Short-chain dehydrogenases of various substrate specificities [General function prediction only].	4.87053e-107
NZ_CP040094.1\|WP_174709552.1\|2382519_2384247_+\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|274311	TIGR02813, omega-3_polyunsaturated_fatty_acid_synthase_PfaA, polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.	8.45602e-137
NZ_CP040094.1\|WP_174709554.1\|2389449_2391126_+\|PfaD-family-polyunsaturated-fatty-acid/polyketide-biosynthesis-protein	gnl\|CDD\|240093	cd04742, NPD_FabD, 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.	0
NZ_CP040094.1\|WP_174709551.1\|2376888_2382282_+\|acyltransferase-domain-containing-protein	gnl\|CDD\|274311	TIGR02813, omega-3_polyunsaturated_fatty_acid_synthase_PfaA, polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.	0
NZ_CP040094.1\|WP_174709566.1\|2409726_2411307_-\|apolipoprotein-N-acyltransferase	gnl\|CDD\|234721	PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed.	9.40931e-141
NZ_CP040094.1\|WP_174713592.1\|2395241_2396426_-\|formylglycine-generating-enzyme-family-protein	gnl\|CDD\|224182	COG1262, COG1262, Uncharacterized conserved protein [Function unknown].	1.14813e-82
NZ_CP040094.1\|WP_174709561.1\|2402908_2403052_-\|hypothetical-protein	gnl\|CDD\|237414	PRK13529, PRK13529, oxaloacetate-decarboxylating malate dehydrogenase.	0.00739788
NZ_CP040094.1\|WP_174709559.1\|2400057_2401644_+\|B12-binding-domain-containing-radical-SAM-protein	gnl\|CDD\|379101	pfam13282, DUF4070, Domain of unknown function (DUF4070). This is a bacterial domain often found at the C-terminus of Radical_SAM methylases.	3.10401e-64
NZ_CP040094.1\|WP_174709564.1\|2406175_2407180_+\|transaldolase	gnl\|CDD\|183426	PRK12309, PRK12309, transaldolase.	0
NZ_CP040094.1\|WP_174709562.1\|2403169_2404213_+\|type-I-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|223135	COG0057, GapA, Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism].	0
NZ_CP040094.1\|WP_114080277.1\|2398157_2399321_+\|DNA-polymerase-III-subunit-beta	gnl\|CDD\|235541	PRK05643, PRK05643, DNA polymerase III subunit beta; Validated.	5.68776e-145
NZ_CP040094.1\|WP_174709560.1\|2401878_2402919_+\|DUF2891-domain-containing-protein	gnl\|CDD\|378592	pfam11199, DUF2891, Protein of unknown function (DUF2891). This is a bacterial family of uncharacterized proteins.	1.24824e-170
NZ_CP040094.1\|WP_174709555.1\|2391128_2392643_+\|thioester-reductase-domain-containing-protein	gnl\|CDD\|225857	COG3320, COG3320, Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism].	3.09199e-140
NZ_CP040094.1\|WP_174709553.1\|2384491_2389243_+\|PfaB-family-protein	gnl\|CDD\|225858	COG3321, COG3321, Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism].	7.86282e-147
NZ_CP040094.1\|WP_174709557.1\|2394068_2394788_-\|4'-phosphopantetheinyl-transferase-superfamily-protein	gnl\|CDD\|225002	COG2091, Sfp, Phosphopantetheinyl transferase [Coenzyme metabolism].	4.86131e-59
NZ_CP040094.1\|WP_174709563.1\|2404454_2405885_+\|pyruvate-kinase	gnl\|CDD\|223545	COG0469, PykF, Pyruvate kinase [Carbohydrate transport and metabolism].	0

>NZ_CP040094.1|WP_174713593.1|2397209_2397635_-|hypothetical-protein
MARPKRNSSVLEKADRRIESLQSISVALDFGEGLTIQAYNATINDLRSKLAAYNTALSSIDKLTDDVKNAEQAVIAMSEKMLLGVGSRYGKTSQEYEMAGGVRRGNTKKKRSVLGNSQVINSVQPSSVNGSMNGISAAIAS
>NZ_CP040094.1|WP_174709558.1|2396827_2396974_+|hypothetical-protein
MFAYYTGWLEVAATQTCVERSRNTKPAFTTEATPRRVKNFDFLPVTDL
>NZ_CP040094.1|WP_174713592.1|2395241_2396426_-|formylglycine-generating-enzyme-family-protein
MPKNAQPVTSSSWHNRDDAFTNVAEGIKVAAEQLSKAKAIAQYRQKVEKFASDGDGDISFGELKILKRLEINLGLIDLEASAVQKEVLKPYKIRQQHIDDYRELFIDFVAQHRYPLDERAKKELNKLQREYELKDEDVVEAKLFTENLGDGVVLEIVPIRGGKFLMGSPKNEPERFDCESPQHLVTIQPFFMGKYPVTQSQWAVVAGLKKVNIDLNPEPSYFKGANRPVEQVSWDDAIEFCARLSNKTGKTYRLPSEAEWEYACRAGTTTPFYFGETITTDLANYDGNYTYGAGSKGKYRQQTTDVGKFSPNPFGLFDMHGNICEWCQDTWHENYNGAPTNGSAWMSNNKLRQLRGGSWGSVTTYCRSAYRDSFARVGGYTFVGFRVVVVRGRT
>NZ_CP040094.1|WP_174709557.1|2394068_2394788_-|4'-phosphopantetheinyl-transferase-superfamily-protein
MTATHHFWLPAPTDLTLLSDEIHVWRIELDQPELQLQNLAATLSSDEIARAERFYFQEHRQRFIAGRGILRTILGRYLDIQPLQVQFNYQQRGKPVLADKFADSGLAFNLSHSQGLGLCAVNCTHPIGVDLEYIRPMSDIEALAKRFFLPREYDMLRSLSPNQQQEVFFRYWTCKEAYLKATGDGLSQLEQIEVSLTPTEPAKLQITENWSLFELVPANNFVAAVAVANCGWNLKCWQY
>NZ_CP040094.1|WP_174709556.1|2393212_2394016_+|SDR-family-oxidoreductase
MNKTHQGQSKKTALITGAASGIGYELACIFAAHDYNLVLVDRNGPTLLEIAAKFQEKFGIFVKTIVKDLSISTAPEEIFTELQLANINVDVLVNNAGFGIYGLFHETDLATELEMLQVNLVCLTHLTKLFVKHMVKQGEGKILNVASAAAFQPGPLMAVYFATKAYILSFSEAIANELEGTGVTVTVLCPGSTESGFHERTGMADSKLLKGKRMMDARTVAEIGFHGLMKGKTIVIPGFMNKLLAKIVRFAPRKLVTKVVRNMQEDK
>NZ_CP040094.1|WP_174709555.1|2391128_2392643_+|thioester-reductase-domain-containing-protein
MTIKQSFTADDIQIFLVSNLAKLLGVATDEIDVKEHLENYGLDSAQAMILVSNLEKLLGFQPSPLLLWHYPNIEALSQRLAEEVQEGSPVQDTKVVASNANIAPSVLDLGAEAVLDPTIHPGAASNVLVGESKNIFLTGGTGFLGAFIIRELLQETNADIYCLVRAANAEEGKSKLQKNLEQYAIWQEEFSSRIIPIVGDLSQPLLGISSEQFQTLAGNIDTIYHSAALLNYVFPYSALKAANVLGTQEVLRLACQVKVKPVHYVSSVAVFESTAYAGKVVKEQDEFNHWEGIYLGYSQTKWVAEKLVKIARDRGLPVTIHRPPLISGDSKTGICNTHDFINLMTKGCLQMGYFPDVDYMLDMSPVDYVSKAIVYLSRQKESIGKAFNLQHPQPAALKMLVEWIRSFGYSVEMIPFEKWQSELINNVTSADNPLYTLRPFLLERWSDEQLTIPDLYLQARRPHISCQDTLHALAGSSIACPPIDSQLFMTYTAYLIQSGFLNLA
>NZ_CP040094.1|WP_174709554.1|2389449_2391126_+|PfaD-family-polyunsaturated-fatty-acid/polyketide-biosynthesis-protein
MTTVDTVLSKHDNGLNFSAWSHNKNQVWKGSLETVSFEKQTIKDKLMVLNKPCYIVKVAGKIGVTNEGYLSPGDNGTTAQVELLTFASPIRIQQFGDPNFLSSHGVKYAYVTGAMAGGIASEEMVIALGKEQILSSFGAGGLTPERLEAAINRIQQALPQGPYAFNLIHSPNEPAIERRAVDLYLKYQVRTVEASAFLDLTPNIVYYRVAGLSLNSSNQIEIKNKVIAKISRREVATKFMQPAPARIIKELLQQGLITELQATLAAKVPMADDITVEADSGGHTDNRPLVCVLPSIIALRDEIQAQYHYQIPIRIGVAGGIGTPQSALAAFMMGAAYIMTGSINQSCVESGACEHTKKLLAQAEMADMIMAPAADMFEMGVKLQVLKRGTMFPMRAQKLFELYRAYDSIESIPLAEREKLEKQVFRKTIAEVWEGTAAYLSQKNPEKLGKAVNNPKLKMALIFRWYLGLSSRWSSSGEKGREVDYQIWCGPAMGGFNDWVRGSYLSEPNNRGVVDVANQIMTGAAFLYRVQNLKIQGLQASDYYSQYHPVRSTSLLEI
>NZ_CP040094.1|WP_174709553.1|2384491_2389243_+|PfaB-family-protein
MEKIAIIALSCLFPDANNPEEYWQNIVNQKDSTSSATVEEIGVDPTIFHNPVKGTPDKTYSLKGGYIRNFQFNPSEYNLPSEFVAGLDNTFKWSLYAAKQAIVQSGYWGNQTVLAKCGVILGNLSFPTKLSNQLFSPIYQQAINPAVRELLQHEDFDLAALPSATKASLYNAMISGLPASIVAQALSLSQINLCLDAACSSSFYAIKLASHYLWSHKADVMLAGAISCADSLFVRMLFSGVQGYAENGISRPLDKSSRGLIPADGVGMVMLKRYSDAVRDGDNILATICGNGLSNDGKGKHLLSPNPKGQTLAFERAYNEANFSPKSIDYLECHATGTLLGDTTEFNSIETFFGQNQAAPLVGSAKANTGHLLTAAGMVGLTKVILSMSHGVIPATMNVSEPLTSEKGTISADKIVRTATTWPNNNAPIKRAAISAFGFGGTNSHLILEQGNTTQSVEPTPPVLPTKVAIVGMDAFFGNCNGLDAFERSIYDGTQHFTSLPPQRWHGIENQESVLKKYGLADGKAPVGAYIKDFEIDTLSCKIPPNEIEKLNPQQLLLLKVSDRAVKDAKLQEGGNVAVIVAAETEFSVHQLQQRWNLSWQVKDGLLNQGISLPAEQLSQLETIVKDSIHQPVEIGEYVSHIANIMASRISALWNFTGPAFTVSAGENSALKALEVAQMLLATGEVDAVVVGAVDLAGGVENVLFRSQFAPINTGVNTLGYDQQANGWTVGEGAGAVVLKRYEAAKEDNERIYAVIDAMSFAQGNSTLSDALVKPDASAISNVCKQAFEMAEIQPTEVNYVEVFGSGVPQEDEAEITGLLQAYPKVGNGLHCALGSVKANIGHTYTASGIASLIKTALCLYYRYIPATPKWSGVKTPQVWEGSPFYVAMESRPWFVDKGGTRRIAAINSMGIDGSYAHLILSEEPSHEERDNRYLQQMPFHLFPIAVSDRTTISDLLNNLQHTIEASSSLSANASETFATFQQQSDAKYVLSITGRNTKDLLKEIESARKGINNAFENGTDWQTPLGSYFTAKPLGKTGAVAYVYPAAVNSYIGIGRTVFRLFPKVFEDLKSNNLYNRAADVEKLVYPRSLPKLTTRQLETLEKQLLDDSLAMFESEIAFARYMTAIFRDDFKVKPQSVFGYSLGETSMMVAQGVWSDFEGGSNTLNSSPLFGDKLSGPKNAVREYWGLTDSPNNNLWNTYVLMATPSQVRECLKQENRVYLTQINTPEEVLIAGDDAACKRVIATLGCNAFPAPFDHVIHCEAMRSQYEEIKKVNTLPSQNLPGIVFYSAADYQPITLDSDTIAHNIAKGLCQELDFPQLVNRVYGDGVKIFLEAGAGNVCSRWIDKILGNQEHITVSLNRRGMDDHAAMVKALAKLLSHQVNVDLSPLYSKAQGTANQNKATLRTVTLGGKAIAATILSEKNRKLVEDFAGDLRSERFKIQHPDIPNIQQSEITDSLNTSNQIIQEETYSHNILPQPEEVKPKNIIDNVFEPREQLQSSESIAIGQQTSLSSPSVITKKISSIISMFDLNKTQYQKLNANNSKITKAHTAFLQSRQDYSQQMSEIIQLQLACAQNLLNDES
>NZ_CP040094.1|WP_174709552.1|2382519_2384247_+|SDR-family-NAD(P)-dependent-oxidoreductase
MTQTAQLSPSSVFVVSGGAKGITAECTIRLAQQQPCKFILLGRSELLETEPDYAQNSDDSALKKCIMENLLSQGEKPTPMNVQKIYNKITSSREIKKTLAAIEKTGAKAEYISVDVTDTPALQEKLATAVQRLGPITGIIHGAGNLADKLIEKKTEEDFEKVYTAKVQGLENLLACVNPSQLQHLVLFSSVTGFYGNPGQSDYAIANEILNKSAHIFKQSYPSCHVVAINWGAWDSGMVTAELKKIFQERKIDIIPIAVGAQMLVKEMDNSNHTTAQVVIGSPLVPLAAELDSELRTYRIRRQMTLEANPFLHDHTIAGSSVLPATCAMTWIINACEQLYPGYRLFNYQDFKVLKGITFNETLAKEHFLEIEEISKVNLERIELKAKISSKNPEGRIHFHFSAQLNLQREIPDAPIYESLNLESDNIITTTGKAFYQNGGATLFHGPGFQEVKRVLNISPEKITTECLWPELTAQEQGQFPVQWVNPYTTDLSMHALWIWTQHFHEEGCLPGKVEKFEQFEAIPHNETFYVSCEVLAKTPSSAIANFIIHDREGKIYSRMLGAHAIIWSMKMLRS
>NZ_CP040094.1|WP_174709551.1|2376888_2382282_+|acyltransferase-domain-containing-protein
MSAYSIDTALAELESLVNNCEQAVIKSIEGKKMKPDKSVSINKINRQLQHNPIAIVGMASLLPQARNLREYWQNIVNKIDCITDVPSTHWSVEDYYDPNPRTTEDKTYCKRGGFLPEVDFNPMEFGIPPSILEVTDVSQLLSLVVAKEAMEDAGYGEKREFNREMVGVILGVAMAKQLGMPLSARLEYPIWEKALKSSGLSDEDTQKIVDKIKSAYVKWDENAFPGMLANVVAGRIANRLNFGGMNCVVDAACASSFGALKMAISELVEHRSDMMLTGGVDTDNTIMAYISFSKTPAVSPSENVKPFDAKSDGMMLGEGIGMIVLKRLEDAERDNDKIYAVIKGIGTSSDGRYKSIYAPRKEGQVKALERAYEDAGFSPATVGLMEAHGTGTMAGDPTEFGSLKDFFDVHDDKKQHIALGSVKSQIGHTKAAAGAASLIKTALALHHKVLPPTINITEPNPKLNIKNSSFYLNTETRPWIRPEGEAPRRAGVSSFGFGGTNYHVVLEEYESDQNDAYRLHSGASEVLLFAPTVEQLLSKSEEILGKLRSPEAPTHYAQLVKECKSPQIPLSAPRFGFVAENLEEACKFLQTSIDWLKLKGSAASWEHPQGIYYRSSGMELGGKVVSLFSGQGSQYLEMGRELVMNFPLMRRLHGYMDSLLIKDNLQPLSEIVFPHPVFGEAEKNVQIAALQRTEYAQPAIGVLSAGMYSILQQAGFKSDFVAGHSFGELTALWAAGVLSTEDYLFLVKARGQAMAAPEDPDHDAGSMLAVKEDISKVEAVIRHFPQVAIANQNSPTQFVLAGPTAEIARVREALHEKGYTAVLLPVSAAFHTPLIAFAQKSFAIATKSVKFQSPKIPVYSNVTSKQYPKEAQGIQKILETHLSNSVLFKQEIENIYAAGGTCFVEFGPRRILSNLVKEILGDRPHITVSLNPSTQKNSDRSLREAVVQLRVIGLALNNLDPYQLPQTIPPIETKKTLNVRLNGINYRSEKTKNAFALALQDGHKVTLPTPEYPDAAPLFSSPGVTPTLAAIETNGHKKLTPVMNGVTANIITQPEQQMNPVTLSQPVQESKMQPIPEKLTNYEQLLASLEYLLTQFQENQAENLQVHGTYLNHQMEYAKAFFQLMQQQNSLLSESKSTAETAKMKLVVMESLERSMMQFHSQQGETLRIHEQYLQEQLEYTKSFFQLIQQEYSQIISGEGTTQLTEKLSNFTPFTTETIVTDAPTKIVESQPLPVTEPVAKNGLNVTQAPLPAAVEPVVETSYSPLPTPHFATVETVEPVVAPPVPVVEEPQAEVVVKISSPPVNEVVAFKAEPAPTTAAPVSGATIDIVDLDKNLLAITSDKTGYPVEMLEMDMDMEADLGIDSIKRVEILGALQEMYPNLPKPNLEELSEKRTIGQVVEYLQSHASKSVSVEIAVHEVQPATEILVEAAPVVEVVTTPEVSVVIAFTPEPEAATSDEFANLGETLLAITSDKTGYPVEMLELEMDMEADLGIDSIKRVEILGAMQEMYPNLPKPNIEELGDLRTIGQIVDYLQQLAGGEKKKSEPEFVQQQPPELEHNIQRHLVKLRSLAQPDYLDFTLPEGHIGLITDDGSLTTYKLTESLIEKGWKLVVISFPQSLIAQQAPLPTGVTRVTLANLSEEHLQQQLQAIASHCGTIGAFIHLHPIFVGNHTGSISYNESEKAIVKHVFLMAKHLKPSLNEAAKHRRSCFCTVAHLDGAFGLEYKVNFGAIGAGLFGLTKTLRWEWPKVFTRAIDLSPRLDAKQSVQNIIAELHDPNLYISEVGYGSQGRVTIIAD
>NZ_CP040094.1|WP_114080277.1|2398157_2399321_+|DNA-polymerase-III-subunit-beta
MKLVCSQSDLSTNLSLVSRAVPSRPTHPVLANVLLQADAETNQVSLTAFDLSLGIRTSFNAEVWQGGAIALPAKLLVDITSRLPEGEITLDDESALTGATSGGEGLIVTLTPKSGHYQVRAMGPEEFPELPVIENTEVIYLTTAALVEGLRGSLFATSGDETKQVLTGVHLTVKQDTLEFAATDGHRLAVVETSNERPLGGTSQLEVTVPARALRELQRMLAHSASSDEPVALYFDQGQVVFAWQNQRLTSRTLEGQYPAYRQLIPRQFERQVTIERRQFVSTLERIAVLADQKNNIVKLSIDSEAQEITLSCEAQDVGSGRESMPAQISGENIEIAFNIKYLMEGLKELPSSEIQMHLNQSLTPVIFTPLGGLKMTYLAMPVQLRS
>NZ_CP040094.1|WP_174709559.1|2400057_2401644_+|B12-binding-domain-containing-radical-SAM-protein
MNVLLLYPLFPKSFWSFEKTLALLDRKAMLPPLGLVTVAAILPQEWEYKLVDRNVRACTEAEWAWADLVIMSAMIVQKEDLLCQILEAKRRGKRVAVGGPFPTALPDEMTSAGVDYLILDEGEITLPLFVAAIARGDRTGIFRSGGEKPDVTNTPTPRFDLLEFEAYAEMSVQFSRGCPFQCEFCDIIVLYGRKPRTKTPEQLLAELDYLYKLGWRRSIFMVDDNFIGNKRNVKLFLKSLLPWMVEHNYPFSFATEASVDLAQDQELMDLMVACNFGAVFLGIETPDEESLTFTQKYQNTRDSLSDAVNRITRSGLRVMAGFIIGFDGEKVGAGARIVKFVEQTAIPTALFSMLQALPDTALWHRLEKEGRLRNKSANINQTTLMNFVPTRPLEDIAREYVQAFCDLYDPERFLERTYKHFRLLGEATYPKKGKAAKKPLNWKVLRAFLIICWRQGVRRQTRWQFWRYLWSMYQHNRGGISSYLAVCAQIEHFLEYRQIVRDQIEAQVAEFLEAEARVKPEAQVMVNS
>NZ_CP040094.1|WP_174709560.1|2401878_2402919_+|DUF2891-domain-containing-protein
MPLDNLEINEAIAVKFAQLVLDCIEREYPNSILRWAESDEDIKPPRKLTPAFYGCLDWHSAVHGHWLLVRLMRHFPEASFHAASKQALGQSLTPEKIQGEIAHFQRRPFFEFPYGVAWFLQLAAELHEWNHPEAKEWRVVLEPLEKLIADNLQRWINELKLPNRTGAHSQTAFALGLMLDWARITKNTDFTQLLENKARQFYLSDRNYSLQFEPLGYDFLSPGLAEADLMRRILPTTDFTEWLTNFLPQIPIDNSVNWLEPGRVDNPQDYMQAHFYGLNLSRAWMLEGIISGLANSDRRIETLRFAALHHRHHGLTDVVIEHYAASHWLGTFAVYLLTNRGLPLMS
>NZ_CP040094.1|WP_174709561.1|2402908_2403052_-|hypothetical-protein
MASFKDWGIGDWGLGIGDWGLGIGDWGLGIGIGNWENTPNSALTLNS
>NZ_CP040094.1|WP_174709562.1|2403169_2404213_+|type-I-glyceraldehyde-3-phosphate-dehydrogenase
MTKLKVGINGFGRIGRLVLRAGIDNPNIEFVGINDLVPPDNLAYLLKYDSTHGQLKHKVEAKEDGILIDGHFIPCVSVRNPAELPWGKSGADYVVEATGLFTDYEGAANHLKAGAKRVVISAPTKDPDRVTTLLMGVNHHLFDPSKDIIVSNASCTTNCLAPIAKVINDNFGLTEGLMTTVHAMTATQPTVDGPSKKDWRGGRGASQNIIPSSTGAAKAVALVLPELKGRLTGMALRVPTPDVSVVDLTFKTAKATSYKEICAAMKQAAAGSLAGILGYTDEEVVSTDFQGDTHSSIFDAGAGIELNSNFFKVIAWYDNEWGYSNRVIDLMLSMSQKEKLASTAAVV
>NZ_CP040094.1|WP_174709563.1|2404454_2405885_+|pyruvate-kinase
MRRTKIICTVGPATSAPEKLQALVEAGMNVARLNFSHGAYEFHAQTAHYLRQISNERQKPIAIMQDLCGPKIRLGTLPPEGLNLEAGSEVTFVLQEKGESIDELPLPLPTLFAMVRPGEPILINDGRVKLIVTDRDADRIRAQVKTGGLISTHKGVNLPQTPLPVSSITEKDLLDLRFGIQLGVDWVAVSFVQSPQDLEPAKRMIEAAGASIRLIAKIERAEALENFDSILKVADAIMIARGDLGVEVPIHEVPLIQKDIIRRCNRAGKPVITATQMLESMISAPDPTRAEATDVANSILDGTDAVMLSGETAVGQYPIAAVQMMHNIAVRTEKALDEGSKHAWCHEAGSLSVTESVAESVCRIAYETGSRAILCNTSSGSTARMVSKYRPTSPIIALTSDITAYRQLALSWGVEALLIPPVHHAEEMFTNVVNTVVDMGLATKGDKVVITSGVPIGKSGTTSLIKVHSIGQPISA
>NZ_CP040094.1|WP_174709564.1|2406175_2407180_+|transaldolase
MSKNLLEQLREVTVVVADTGDIQAIEKFKPQDATTNPSLITAAAQMPEYQGIVDQTLLQAKKDAGAGATQAQIVSLAFDRLAVAFGLKILQIIPGRVSTEVDARLSYDTEATLTKARDLIAQYKAAGIGRDRVLIKIATTWEGIRAAEILEKEGIHCNLTLLFGLHQAIACAEAGVTLISPFVGRILDWYKKDTGRDSYPAAEDPGVLSVTKIYNYYKKFGYKTEVMGASFRNLGEITELAGSDLLTISPSLLTELQSTVAELPRKLDPAKAASLSIDKISIDKASYDKMHAADRMATDKLDEGIKGFTKALEDLEKLLADRLVRLEGEVVASH
>NZ_CP040094.1|WP_174709565.1|2407372_2407750_-|hypothetical-protein
MKGFRKLSSIALLLCAFVYPPSLAEAKDISLNNARNEQSAAPEANLIGDKTGELLIAQRRPGRYRMIRRRQIIRQRQPYGRYQNIRRRQPYGRYQNIRRRDQLRQRQIIQRQQPYGRYSIIRGRY
>NZ_CP040094.1|WP_174708235.1|2408251_2409318_-|ISKra4-family-transposase
MTPEQKQALQKHIQAIAKILYEDTSKEKLTNLAAIEEAVRSQMQKHVMPEVGGFFIETITGTTAGYQRRLKSILGELAITSKQAIELEVAPSTQLSPYLETCCLRVSANVSYEDAASDIKYFTGIEVSHSSQQRLVHRQNFELPTPEQTIEELSVDGGNIRVRTPKGQICAWLGYKAISLHHLGILGTSFQNNQIVIDWVNDQPLASPLTCIGDGHDGIWNIIDQLAPDAQRREILDWFHLIENLHKVGGSQKRLKQAQNLLWKGQVEATIALFTDCKGKQVQNFCRYLDKHRNRIINYEYYQAEEICSIGSGSVESAVKQVDRRTKISGAQWKRENVPQVLAHRCAYLNGLLSV
>NZ_CP040094.1|WP_174709566.1|2409726_2411307_-|apolipoprotein-N-acyltransferase
MQKKQNKKQGERLIALLPYLIAFASGILMGLTVAPVGAWFLAWIAIVPLWVLVVTSAKGKNQFPPAFLWGVGFHGVALFWITGIHPMTWLGVPWLPSLAITLFCWGFISVLGGVFLTIWAAVMVRLGGKKPWLRILIGTAVWCGLESLWSAGPLWWSSLAYTQSPHNLVIVHLGQLSGPNTVTAAIVAINGLIAEGWMNRTEAERISSVSSAPLRFVNKYWVIATGLLITLHFIGFFLYSRPIAQPPEAALKVGIVQGNIPNRLLRSSEGFRRAQENYTNGYLTLADQGVDAVLTPEGALPIFQRNLLGTALVAAVKEKGVVAWIGAFGERGDSYTISLFTFNSKGEIVSRYDKSKLVPLGEYIPFEGILGGLIQRLSPLDAHQVPGLANQIFDTPFGRAIASICYESAFPEQFRRQAAAGGQFILSSSNDAHYTASMPFQHHAQDIMRAIESDRWSARATNTGYSAFVDPHGRTLWMSGYNTYETHAEIIYRRQTQTLYVRWGDWLTPLLLGLSVLGWFLQRVIN

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Crispr_ID: NZ_CP040094_13

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040094_13

2676258-2676659

Unclear

N:A

Consensus_repeat	Method
CTTTCAACCCGNCTCTAGCTGNNAGGGGTNTTGAAAC	CRT
ACTTTCAACCCGCCTCTAGCTGGGAGGGGTGTTGAAAC	CRISPRCasFinder
ACTTTCAACCCGCCTCTAGCTGGGAGGGGTGTTGAAAC	PILER-CR

5 spacers

c2c5_V-U5,RT

The CRISPR arrays of NZ_CP040094_13

>merge|NZ_CP040094|13|2676258-2676659|CRT,CRISPRCasFinder,PILER-CR
CTTTTAACCCGTCTCTATCCGAAGGGTTGTTGAAATCGGTCTTCACTTCCCAATCCGATTGTGAATGACTTTTTTCAGCCCGTCTCAAGCTAGAAGGGGTATTGAAACCGTGATGGGCAAGGTAAAGACTGGTGGCAGTATGTTAACTTTCAACCCGCCTCTAGCTGAGAGGGGTGTTGAAACTGGGTCAATTTCCTCGCGCTGATTCTCTTCCATTTGTAAACTTTCAACCCGCCTCTAGCTGGGAGGGGTGTTGAAACTTGGGGCATTGCCTTTAAGTCATAGCGACAATGGCACTTTCAACCCGCCTCTAGCTGGGAGGGGTGTTGAAACCTCTTCCATTCAGGAGTGTTATGATTCTTCCACTTTCAACCCGCCTCTAGCTGGGAGGGGTGTTGAAAC

>NZ_CP040094|13|6|2676258-2676659|CRT
CTTTTAACCCGTCTCTATCCGAAGGGTTGTTGAAATC	GGTCTTCACTTCCCAATCCGATTGTGAATGACTT
TTTTCAGCCCGTCTCAAGCTAGAAGGGGTATTGAAAC	CGTGATGGGCAAGGTAAAGACTGGTGGCAGTATGTTAA
CTTTCAACCCGCCTCTAGCTGAGAGGGGTGTTGAAAC	TGGGTCAATTTCCTCGCGCTGATTCTCTTCCATTTGTAAA
CTTTCAACCCGCCTCTAGCTGGGAGGGGTGTTGAAAC	TTGGGGCATTGCCTTTAAGTCATAGCGACAATGGCA
CTTTCAACCCGCCTCTAGCTGGGAGGGGTGTTGAAAC	CTCTTCCATTCAGGAGTGTTATGATTCTTCCA
CTTTCAACCCGCCTCTAGCTGGGAGGGGTGTTGAAAC

>NZ_CP040094|13|12|2676328-2676659|CRISPRCasFinder
TTTTTCAGCCCGTCTCAAGCTAGAAGGGGTATTGAAAC	CGTGATGGGCAAGGTAAAGACTGGTGGCAGTATGTTA
ACTTTCAACCCGCCTCTAGCTGAGAGGGGTGTTGAAAC	TGGGTCAATTTCCTCGCGCTGATTCTCTTCCATTTGTAA
ACTTTCAACCCGCCTCTAGCTGGGAGGGGTGTTGAAAC	TTGGGGCATTGCCTTTAAGTCATAGCGACAATGGC
ACTTTCAACCCGCCTCTAGCTGGGAGGGGTGTTGAAAC	CTCTTCCATTCAGGAGTGTTATGATTCTTCC
ACTTTCAACCCGCCTCTAGCTGGGAGGGGTGTTGAAAC

>NZ_CP040094|13|8|2676403-2676659|PILER-CR
ACTTTCAACCCGCCTCTAGCTGAGAGGGGTGTTGAAAC	TGGGTCAATTTCCTCGCGCTGATTCTCTTCCATTTGTAA
ACTTTCAACCCGCCTCTAGCTGGGAGGGGTGTTGAAAC	TTGGGGCATTGCCTTTAAGTCATAGCGACAATGGC
ACTTTCAACCCGCCTCTAGCTGGGAGGGGTGTTGAAAC	CTCTTCCATTCAGGAGTGTTATGATTCTTCC
ACTTTCAACCCGCCTCTAGCTGGGAGGGGTGTTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040094.1\|WP_174709708.1\|2673465_2675712_+\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|223715
NZ_CP040094.1\|WP_174709709.1\|2677119_2679057_-\|hypothetical-protein	c2c5_V-U5	-	unknown
NZ_CP040094.1\|WP_174709713.1\|2683664_2684288_+\|DUF4433-domain-containing-protein	unknown	unknown	gnl\|CDD\|373093
NZ_CP040094.1\|WP_174709714.1\|2684342_2685407_+\|macro-domain-containing-protein	unknown	unknown	gnl\|CDD\|394873
NZ_CP040094.1\|WP_174709706.1\|2671300_2672548_+\|glycoside-hydrolase-family-10-protein	unknown	unknown	gnl\|CDD\|224563
NZ_CP040094.1\|WP_174709704.1\|2668432_2669905_+\|glycolate-oxidase-subunit-GlcD	unknown	unknown	gnl\|CDD\|273050
NZ_CP040094.1\|WP_174709716.1\|2687316_2690499_+\|type-I-restriction-endonuclease-subunit-R	unknown	unknown	gnl\|CDD\|223683
NZ_CP040094.1\|WP_174709705.1\|2670372_2670888_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174709711.1\|2681185_2682250_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224117
NZ_CP040094.1\|WP_174709715.1\|2685384_2687055_-\|hypothetical-protein	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
NZ_CP040094.1\|WP_174713608.1\|2679650_2681186_+\|SAM-dependent-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|223363
NZ_CP040094.1\|WP_174709717.1\|2690495_2691194_+\|M48-family-metallopeptidase	unknown	unknown	gnl\|CDD\|307807
NZ_CP040094.1\|WP_174709701.1\|2662798_2664967_-\|peptidase-domain-containing-ABC-transporter	unknown	unknown	gnl\|CDD\|225183
NZ_CP040094.1\|WP_174709712.1\|2682242_2683619_+\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|341150
NZ_CP040094.1\|WP_174709710.1\|2679134_2679560_+\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133380
NZ_CP040094.1\|WP_174709702.1\|2665046_2666555_-\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902
NZ_CP040094.1\|WP_174709699.1\|2661912_2662128_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174709707.1\|2672547_2673111_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174709703.1\|2667613_2667901_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174709700.1\|2662450_2662768_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP040094.1\|WP_174709708.1\|2673465_2675712_+\|GAF-domain-containing-protein	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.87947e-36
NZ_CP040094.1\|WP_174709706.1\|2671300_2672548_+\|glycoside-hydrolase-family-10-protein	gnl\|CDD\|224563	COG1649, COG1649, Uncharacterized protein conserved in bacteria [Function unknown].	1.6641e-126
NZ_CP040094.1\|WP_174709704.1\|2668432_2669905_+\|glycolate-oxidase-subunit-GlcD	gnl\|CDD\|273050	TIGR00387, Glycolate_oxidase_subunit_glcD., glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity. [Energy metabolism, Other].	0
NZ_CP040094.1\|WP_174709716.1\|2687316_2690499_+\|type-I-restriction-endonuclease-subunit-R	gnl\|CDD\|223683	COG0610, COG0610, Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms].	1.41353e-115
NZ_CP040094.1\|WP_174709713.1\|2683664_2684288_+\|DUF4433-domain-containing-protein	gnl\|CDD\|373093	pfam14487, DUF4433, Domain of unknown function (DUF4433). This family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 201 and 230 amino acids in length. There is a single completely conserved residue E that may be functionally important. This family is distantly similar to pfam01885 suggesting these may be ADP-ribosylases.	2.01236e-79
NZ_CP040094.1\|WP_174709715.1\|2685384_2687055_-\|hypothetical-protein	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	2.67921e-54
NZ_CP040094.1\|WP_174709711.1\|2681185_2682250_+\|hypothetical-protein	gnl\|CDD\|224117	COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning].	1.97228e-06
NZ_CP040094.1\|WP_174709717.1\|2690495_2691194_+\|M48-family-metallopeptidase	gnl\|CDD\|307807	pfam01863, DUF45, Protein of unknown function DUF45. This protein has no known function. Members are found in some archaebacteria, as well as Helicobacter pylori. The proteins are 190-240 amino acids long, with the C-terminus being the most conserved region, containing three conserved histidines. This motif is similar to that found in Zinc proteases, suggesting that this family may also be proteases.	4.56295e-62
NZ_CP040094.1\|WP_174709701.1\|2662798_2664967_-\|peptidase-domain-containing-ABC-transporter	gnl\|CDD\|225183	COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms].	0
NZ_CP040094.1\|WP_174709712.1\|2682242_2683619_+\|restriction-endonuclease-subunit-S	gnl\|CDD\|341150	cd17261, RMtype1_S_EcoKI-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit TRD-CR, similar to Escherichia coli str. K-12 substr. MG1655 S subunit (S.EcoKI) TRD2-CR2, Escherichia coli A58 S subunit (S.EcoEI) TRD2-CR2, and Aminomonas paucivorans S subunit (S.Apa12260I) TRD2-CR2. Escherichia coli str. K-12 substr. MG1655 S subunit (S.EcoKI) recognizes 5'... AACNNNNNNGTGC ... 3', Escherichia coli A58 S subunit (S.EcoEI) recognizes 5'... GAGNNNNNNNATGC ... 3', and Aminomonas paucivorans S subunit (S.Apa12260I) recognizes 5'... GCCNNNNNCTCC ... 3'. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. For example, S.EcoKI-TRD1 recognizes AAC/GTT and S.EcoKI-TRD2 recognizes GCAC/GTGC, S.EcoEI TRD1 recognizes GAG/CTC and S.EcoEI TRD2 recognizes GCAT/ATGC, and S.Apa12260I TRD1 recognizes GCC/GGC and S.Apa12260I TRD2 recognizes GGAG/CTCC. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases.	8.30555e-38
NZ_CP040094.1\|WP_174709710.1\|2679134_2679560_+\|MerR-family-transcriptional-regulator	gnl\|CDD\|133380	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators. Helix-turn-helix (HTH) transcription regulator GlnR and related proteins, N-terminal domain. The GlnR and TnrA (also known as ScgR) proteins have been shown to regulate expression of glutamine synthetase as well as several genes involved in nitrogen metabolism. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	3.30847e-15
NZ_CP040094.1\|WP_174709702.1\|2665046_2666555_-\|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	1.39906e-32
NZ_CP040094.1\|WP_174713608.1\|2679650_2681186_+\|SAM-dependent-DNA-methyltransferase	gnl\|CDD\|223363	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms].	1.19033e-129
NZ_CP040094.1\|WP_174709714.1\|2684342_2685407_+\|macro-domain-containing-protein	gnl\|CDD\|394873	cd02901, Macro_Poa1p-like, macrodomain, Poa1p-like family. Macrodomains are found in a variety of proteins with diverse cellular functions, as a stand-alone domain or in combination with other domains like in histone macroH2A and some PARPs (poly ADP-ribose polymerases). Macrodomains can recognize ADP-ribose (ADPr) in both its free and protein-linked forms, in related ligands, such as O-acyl-ADP-ribose (OAADPr), and even in ligands unrelated to ADPr. Members of this family show similarity to the yeast protein Poa1p, reported to be a phosphatase specific for Appr-1"-p, a tRNA splicing metabolite. Poa1p may play a role in tRNA splicing regulation.	7.85876e-40

>NZ_CP040094.1|WP_174709708.1|2673465_2675712_+|GAF-domain-containing-protein
MNKNPAESTMELTKLSPPQIIFGTEVEEKNSSEQFLLSMYDSVQASIFVVDVLEDGDFQYVALNPTHERWIGIRSDDLRGKKPEDILSPIDAARVRQHYADCVLFGKTISYEQCLQFQGVTTWWSTTLTPLRDANSRIYRLIGTSSNITPVKQAQEAVGLQVEREQLLEAIAGRIHQSVELETILHQTTIELRQFLNCDRILIYRFQADGSGVIVAASVAASDSLLGKNIIDPCFSGNSENYGQGCIQVVEDIYAADLHPYHIDFLASLQIRANVVVPIFQEQDMWGLLIAHHCQESRQWQQAETSLLKQLATQIGIAVQQSELRQQFKDLKAEIELQKQKHKNQLQQVRNFEALVRRMTEQIRDRLDEAQVLQTVTQELTELLNLERCQIELYSPCQTLVTIAYEYSINNLPQCQELTRQITDRLEVYQPLLQKQPLQFLEVAPGWQPKLLVMSQMACPIFDTQGILGNLWLTRPSQEAFDEFEIELVQQVANECAIAIRQAQLYQQTQTQVKELENCDRLKNQFLRNLSQELRTPITSISLAVQTLESVLTPAEILEIEIVPQLLQILHNECARESKLINDLLKLTYLEAEPEPPTLIAIDLQSWLQPIVESFRDLTNCQRQQLKLSLDSELPPLETDITDMERIITELLNHVCKYTPAGESVTVSTHLRGDAVELNISNSGLELTSNELSRIFEPFYHLSKHDPWKHSGTGLELALVQKMVRHLGGSIYVESGAGQTTFTIKFPL
>NZ_CP040094.1|WP_174709707.1|2672547_2673111_+|hypothetical-protein
MPFAPENTRFSFTLLWTLATCGGFLLSLLFIEVGDKPDVGVVEAAIGGFAIALPQGCLLKEPVFCIRWILSSLLGWSIITAIGIGAVGWIVPSIQILPLRILSGAIYGALGGLGIGLTQWLAIPQPVAWRWIFVSSVSWAVAVPVGSAVGMILHHLTQLFLGEVMGLAITWLLVGILTGMNAHKLRS
>NZ_CP040094.1|WP_174709706.1|2671300_2672548_+|glycoside-hydrolase-family-10-protein
MNRFARRCVSYLMCLGLVATLTVFSFSSVSSLPVYSQKIIPLPTEIRGVWLTNVASGVLFVPWGINRAINQLSSLNFNTIYPVVWNRGHTFYKSAVAEITTGSDTQPFLNFMHGGQDVLTKIVTLAKKKDLRVIPWFEYGFMTPHYSQLARRYPDWLTIGQEGLKSIQDAPPEEIDNSLVSKLAWLNPLHPQVQEFIRGLILEVVRDYDVDGIQIDDHFGMPVQFGYDRFTIELYQQEHQGKSPPIDPFNSEWMRWRADKITDFMAELYQAVKAVKPKVKISLSPNYQAFAYKYYLQDWENWVKKGLVNELILQVYRNDQSSFIAQLEQPSVKLAQSLIPVQIGISTGTVRNPVKMAQVREQVQAVRDRNFDGISFFYWESLWGYIVPESPQQRRKAFFEMFNARTVRLFKPKKL
>NZ_CP040094.1|WP_174709705.1|2670372_2670888_+|hypothetical-protein
MRLRKLVKYGIFVLILVIGFCFTAIARGYEIPPPNQQVAIAQQTSDLMLNTLFAALTQEFDETTAQNVEQGKQSISLIFNDQNKDMRLVGTVGPLRENDRPRDNFEFQANALAMAGQAYTSVQKVDNQWYYRRSIPLSNFRAECALCHVNFPAGPTADPVGALMLRVPIKK
>NZ_CP040094.1|WP_174709704.1|2668432_2669905_+|glycolate-oxidase-subunit-GlcD
MLTQDKKQHNWKPIIKAFEVVLGKNGVVQRREELITYECDGLTGYRQRPAVVVLPRTTEQVAQVVKICNQYSIPFIARGSGTGLSGGALPVEDSVLIVTSLMRQIISIDLENQRTIVQPGVINSWVTQAVSGAGFYYAPDPSSQIICSIGGNIAENSGGVHCLKYGVTTNHVLGLKIVTPEGEIVDLGGQIPEMPGYDLTGVFVGSEGTLGIATEITLRILKSAESICVLLADFTSIEAAGATVSDIISAGIIPGGMEMMDNFSINAVEDVVATNCYPRDATAILLIEIDGLEVEVAGNKQRVTEICKKNGARNVTSASDPETRLKLWKGRKAAFAAAGHLSPDYYVQDGVIPRTQLPYVLHEIEALSEQYGYRVANVFHAGDGNLHPLILYDNSVPGALEQVEEMGGKILKLCVQVGGSISGEHGIGAEKKCYMPQMFSPVDLETMQWVRQVFNPQGLANPEKIFPTPRTCGEAANASAVNKFEGVERF
>NZ_CP040094.1|WP_174709703.1|2667613_2667901_-|hypothetical-protein
MSYQINTSKLFVELFDEQQELLAGGVDSQRNQSNFARRITRLDGTSRSGPNGSEANSTGSNDGTQTSAAQGLQLGGTTAIVLLPLPPLSAPLFAA
>NZ_CP040094.1|WP_174709702.1|2665046_2666555_-|HlyD-family-efflux-transporter-periplasmic-adaptor-subunit
MANFLAREENYFGNRFNEPNPEQLHVVDVNEFLPHLSKWTNIGGGVLVTTFVAAIALTSVLSYNVTVKVPASIRPVGELRVVQSAMAGTVQNIDIQENQVVTQGQAIAQVDDSRLKTQKSQLENSIQQGKLQQTQIDAQLAEIDAQIAAQTNLTNRTIIAAQAELDGTQRNYQDQQVKAAADMTQAQAALILAKVQRDRLLREKVLRATVQEAEAALQVAKVQRDRLQPIVASGSVSRNLFEEKEQAVISAQAKLEEAKVSVKNLLEDKEQALNVAQTNLEKAKTAINASNAVVIVASERIKQEQARGEASLAALKKERETLLQQRLELQKQLASSSKDLQQVKTDLNLSVIRSPIAGTLLQLNLRNPGQVVQPSEAIAQIAPLNASLLVKARVPAQDIDKVKAGQKVQMQVSACPYPDYGTLKGTVKTVAPDALPVKNNVNSGVAQVVAYEVSIEPQTSYLSRGDRQCHLKAGMEGRADIISRRETVLQFILRKARFITDF
>NZ_CP040094.1|WP_174709701.1|2662798_2664967_-|peptidase-domain-containing-ABC-transporter
MFDLFKLHKNYQCVLQLSEEDCGAASLASVSKHYGRFLSINRSRDAVGTGQLGTTLLGLKRGSETLGFNARAVKASSAIVDRITEINLPVIIHWRGYHWVVLYNKRGNKYVIADPAVGIRYVNREELTEAWNGVMLLLEPDPERFFEQPEEEAKGGLRRFLVRILPYRGLLTQVLTINIVLGLLALGTPILIQLLTDDVLVRGDTQLLTVVISAVVVMSLFGSTLQLLQAIMIAHFGQRLQLGLVLEFGRKILQLPLNYYEARRSGEITSRLRDINDINQLVSQIVVLLPSQFFVAVVSFCLMLFYSWKLTIAVIFFAGLITLSTLPFLPILQQKTRSLLVLGTENQGVLVETFKGAQVIKTTNAAPQFWDEFQSRFGRLANLTFSTIQIGIINGTISKLIATIAGVVLLGLGSILVINKELSIGQMLAFNALQFNVLALINSVVGLVDEYFRSQTAISRLLEVIDATPEVVGGSQKPVVQISSDADIRCSHIQFHHPGRVDLLEDFSLKLPGGKAIALIGKSGCGKSTLAKVIAGLYQPNSGNIRIGFYNINDLSLDCLRQQVVYVPQEPHFWSRSILDNFRLGTPYISFEEIVKACQIADADEFISQLPNQYQTVLGEFGANISGGQRQRLAIARGILTNPPVLILDEATAGLDPVSESHVLDRLLEYREGKTTILITHRPSVINRADWIVLLDKGQVQIQGDIETFLSQQGEHLKFLSM
>NZ_CP040094.1|WP_174709700.1|2662450_2662768_-|hypothetical-protein
MSENTKSHNPEWLRDLSEEEQETLDAGQITNIPGGSNFFIQQTNIQTAADNTLTLAGGDISSQKTRYSLSQFTIGSSITFGLPNFSLGENKLKNLIANLLNSIFS
>NZ_CP040094.1|WP_174709699.1|2661912_2662128_-|hypothetical-protein
MSNQITMSDLLVDLSTEQQQLLAGGNTTDGDTGNGDTGDTGDTGNGDTEATPVPKFFIRGIVSLRPIRGVS
>NZ_CP040094.1|WP_174709709.1|2677119_2679057_-|hypothetical-protein
MSQNTIQCRLVASVVTRQQLWKLMADQNTPLINELLLQVAQDPDFETWRQKGKIPTGIVKQLCAVLKTDSRFTGQPGRFYTSAIARVNYIYKSWLALMKRLQYQLDGKNRWLEMLKSDTELVETSGVNLESLRIKAAEILVQVTPQSDTVEPQPVKGKKRQKTKKSKDSDSDCAERTLRDRTVSKSLFEAYSNTEDNLTRCAISYLLKNRCKVSEKEEDLKKFAQRRRKVEIQIERLTEQLAARIPKGRDLSDTKWLETLIIATQQVPSNEGEAKSWQDNLLKNPSRIPFPVAFETNEDMTWFKNKDGRICVKFNGFSEHTFQIYCDSRQLHWFQRFYEDQQIKRIGKKQHSSSLFTLRSGLIAWQEEEGKGDPWNVNHLILYCSVDTRLWTDEGTNLVREEKAEEIAKILTKIKAKDDLNDKQLAYIKRKNSTLARINNPFPRPNKPLYKGQSHILVGVSFGLEKPTTVAVVDGSTGKVLIHRSIKQILGDNYRLVNRQRQQKHSLSHQRQIAQTLAAPNQLGESELGQYVDRLIAKEILAIAQTYKAGSIVLPKLGDMREQVQSEVQAKAEQKSDLIEVQKKYAKQYRVSVHQWSYGRLITGIQNQAKKAGIVVEEAKQSVRGSPQEKAKELAIAAYYSRKIN
>NZ_CP040094.1|WP_174709710.1|2679134_2679560_+|MerR-family-transcriptional-regulator
MQETFFTSKQAAEITGCTLRQLQYWREKGVVMPVIGETGIGRSIYYSKPNLIELAVMLYFLSMGLNFDVANTTLKILKDKEPELFESGKGTRWMLQRDNQKRSLELVEFELEQAIAQIKAGQPVIPVWLDTIHERIASKLK
>NZ_CP040094.1|WP_174713608.1|2679650_2681186_+|SAM-dependent-DNA-methyltransferase
MGKLTLPQLERHLFSAADILRGKMDASDFKEYIFGMLFLKRASDVFEPQYEQILQQNLQRGRTQEEANMRAENPTTYKETFFVPEKARWAYIRDELHKNVGQGLNDALTAFEESNEALTGVLKHIDFNRQAGKNRIPDVKLRELIKHFNKYRLRNEDFVFPDLLGAAYEYLIKEFADSAGKKGGEFYTPREVVQLMVRLLKPQPGMSVYDPCCGSGGMLIQSKQYVEECGRDARNLALYGQDNNGGVWAICKINMLLHGIRDADIHNDDTLFNPLHIADGELIRFDRVISNPPFSQNYSREGMQFSGRFTHGYCPETGKKADLMFAQHMLAVLKTDGMMATVMPHGVLFRGGEEKKIRESFIKNNQLEAVIGLPPNLFYGTGIPACILVMCPQGAKPVERQGKVLFINADAEYYAGRAQNYLRPEHIEKISWVFENFVSLPGYSAVVTKEKLAEEGYNCNIRRYADNALPPEPQDVKAHLFGGIPKAEVEAKRELLAAHGFDPSRIVAERN
>NZ_CP040094.1|WP_174709711.1|2681185_2682250_+|hypothetical-protein
MDYLDFISAISERGQIKTFIESDAGVQQQEGKLYSVFAAWWQIHSTSLGDLPKTKKVMELRAEFFSSFVDSLQPVGLLDRFKVAGVVASWWNEQRYELRTLSESDFGGLVDSWVDTIKDALEQDDDEKKKQAKFNPLNHKLVGRLMPDYLQDIAEAEAKIAELEQQKSAFEQGEEAEADDEEGEESEAVNIVKDLEKDLKYIKNSIKEPKKELKILKKASLFNKDKIAELEVFIEENEAEIAEIEAQLEPYKEIVKQLKEAKAELKTLKNELVKRLEAARAVLTDEDCQDLVLAIFKDGLIAELERYVTAHRQQVIAAVENWWDKYRVTLQDIEKERDAAAKKLNEFLQGLGYA
>NZ_CP040094.1|WP_174709712.1|2682242_2683619_+|restriction-endonuclease-subunit-S
MREVLVKTEEFKDSPVGRIPKDWSCLTINDCLREGIIIDVQDGNHGEAHPKTDDFVTEGIPFVMAKDLVNGQINIADCHKITWHQYQSLRIGFAHPRDILLSHKGTIGLTAIVPNSLPDVMLTPQVTYYRVAEGKQLLGKFLFWFFQSPLFQHKLQILSAQSTRSYIGITLQKTLLILIPHIDEQKNIAEILDTVDEAIARTSSLITKLKQTKAGLLQDLLTRGLDEDGKLRDPEAHPEQFKDLALGRIPQKWTVKEFGEYIAHLDSGWSPICEAEPVANGEWGVLKTTAVVWSGYNPSESKKLPSNLEPRYSAVVETDDILITRKGPRERVGVVVHIPSTPANLMMPDTVFRVRLKESSPLLPAFIPLTLGSIAVQQDWNRKKVGLAEAQVDINYGIVRETIIYIPPKSEQKYIIQILNTYDTRIRTEEAYLNKLKLQKQGLMQDLLTGKVRLNSIK
>NZ_CP040094.1|WP_174709713.1|2683664_2684288_+|DUF4433-domain-containing-protein
MSTPIYHITPIDNLPSILKSGGLAANSRLKKTDYIDIAHGHIQDRRGLTRVPCGMGGYLHDYVPFYFAPRSPMLYAIHKGNVEKYKGGQNKVIYLVSEVEIIASNKLDFVFTDGHAAVVALSEFYDKLDDLCNIDWNIMKANYWANTDEDNDRTRRRQAEFLVHQFCDCSLITEIGVINNTVQSQVQQLLQNFNNQTLVKVYSSWYY
>NZ_CP040094.1|WP_174709714.1|2684342_2685407_+|macro-domain-containing-protein
MLEFKQGNLFEEKVEALVNTVNCVGVMGKGIALQFKQAYPENFRHYEKACKDGEVQPGRMFTVATGSLFNPRYIINFPTKRHWKGKSKIEDIKSGLVALVAEVQQLGITSIAIPPLGCGNGGLNWSEVKPLIESAFAQLSDIEIIIFEPVGAPAAEKMPVATKKPNMTRARALFISLLELYGIPGYELTKLEIQKLAYFLQEAGETLTLPYVKHKYGPYANNVNHALKRIEGHYIYGYGDGTSKAESAEIYVLPEGREAAQAFLEIEPDAQKRLERVSNLIYGFETPYGMELLATVHWVATKESNPAQDSEQAIALVHEWSDRKRKLFKPEHIRKAWQRLHEQNWLNIKEQTTS
>NZ_CP040094.1|WP_174709715.1|2685384_2687055_-|hypothetical-protein
MTGVSLYLLEIIGIGYTLHHSRGDRLRECLAFSVRLSSKHFQIIKSLQNKNMSRSLDDLLTEYFQPEKLKAAFKAYEQQKTDFLQQGEPKVQMGVDGISYPTFKKELDLRCQLLSNRLLKGTYQFYTFREIEISKPSGGKRVLSIATIRDVIVQKVLYDAIYKEIEKDFQATSKLDKVSFAYRKGKSAPYAASLIHYYIKQGFIFALDADIVKFFDKLSHEYLFEIIEIKFGQNTLATKLLRRFIKTGGLPHKNQCGKTYRYRFHHHKPILNNQRIIRTQGIPQGGVLSGMLANLYLHEFDCWVLNDLSKKYSLRYVRYADDFVILLKEKELIPLVHQEVAQKLQDIKLELHTDESKTKHVDIAKDFLEFVGFQFNLEHIKVKPGNIIRFQERIIEKINKEPSYKTGENSKRRFNFFIKYVINKKVTGRGEKICDECSGVLGERVKSWMGFFMGITDIQQIRELDKWIRKEVSKHFYTKYQLRLKKSDFKNAGLITLEQEYYRLHKRKKCLCEKPNCSLSQMNDSKAIQDTGASQTISWNFIGNFLEIIFRKLFAL
>NZ_CP040094.1|WP_174709716.1|2687316_2690499_+|type-I-restriction-endonuclease-subunit-R
MSQQTPEYIHVELPTIQQLTSMGWQYIEGDWDNAKVTERENFKQVLLTERLKAAVKRINLDDNGNPWLDDLQVQAAVSQLERLGANRLMEANQAATELLLKGTTVLGQDGKQHTVHFIEFDPELCDRNDFLAINQYRVDPPWATGNRGFIVPDMVLLVNGIPLVVIECKSPNLDNPITEAIQDLLKYSNQRGSSQPEGAEKLFHYNLLMIAASRGRATAGTIGANYEHYVDWKDTIPTPQAEIAAQLGASELNSRQTLIAGMLKPANLIGILHNFTLFKTSGGRTIKIVPRYQQYRAVYKALQRLQHNQTRAQHGTDDQRGGIIWHTQGSGKSLTMVYLIRKIRTIPELRRFKIVVVTDRRDLEKQLADTAVLTGEPLQKAKKVKRLEQYLQQPGAGLVFGMIQKFKGGEDSEEEAEIEPIPKNLNPSENILVLIDEAHRSHAKTLHTNLLEALPNCVRIGFTGTPIVKAAKKTTLQIFGSFIDEYNIRQSQEDKVTLPIVYEGLEARGTITQGDDLDQLFEIIFADKTPEERAQIKAKYATKTQVGEARELIKAKAKSMLRHYIERILAGGFKAQVVASTRLAAVRYQEGFVEAQREIVQQLEHRAPILQSLDTEALESLDAETRFFAQALPHLETIRKLEFAAVISGDKGDYPSWKKWTDKSQQEINIEKFKKSLDQDSLAILIVKNMLLTGFDAPLEQALYLDRSLKEYELLQAIARVNRVYNDKKTEGLVVDYYGVDIAAALSVYENIDTESALFDIRAELPKLRDRHQRVIALFTKNGCTIDDVDACVDLLLDERLRVEFNDCFQDFLNTLDTILPRSEARQPYNFVRDAKQLGFIKKAVADLYRDEKLNIISAKEKVRALIDQYIESQGIDPKVPPVDIMSLDFKTHVQRHRSIKAQAAEMEFAARHHISENYEEDPVYYKNLSEKLTEILESLADNWEEKVEALRKYIEQIQAGRTTDETGLDPKTQMPFLNILGEYSQKQLPELAQTTVEIVEHIRQEVRRVNWGSQIVQEDLRRWIAGYLDERDLVSYDQLEEVADKLVQLARRNRDSLMA
>NZ_CP040094.1|WP_174709717.1|2690495_2691194_+|M48-family-metallopeptidase
MKTITFGDLSFEIRHSSKRRTVGITVERDGQLVLASPPEVPIETLERIVSDKRYWIYSKLLKKESLNPPASVKEYVSGEGFYYLGRSYCLKVVDGVQQQPSLRLYQSRFELQSPAQAQGREHFIKWYREHLQPIVEQQIAKLIKRVTTSPRSVQVRELGNRWGSCGHKGDLYFHWRVAMLPRTMIEYLAVHELVHLIEPDHSTAFWHRVERILPDYLERKQWLAENGAIYNL

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Crispr_ID: NZ_CP040094_14

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040094_14

2848718-2849046

TypeV-U5

N:A

Consensus_repeat	Method
CTTTCAACCCGCCTCTAGCTGGGAGGGGTGTTGAAAC	PILER-CR
GTTTCAACACCCCTCCCAGCTAGAGGCGGGTTGAAAG	CRISPRCasFinder
GTTTCAACACCCCTCCCAGCTAGAGGCGGGTTGAAAG	CRT

4 spacers

c2c5_V-U5

The CRISPR arrays of NZ_CP040094_14

>merge|NZ_CP040094|14|2848718-2849046|PILER-CR,CRISPRCasFinder,CRT
GTTTCAACACCCCTCCCAGCTAGAGGCGGGTTGAAAGAACTACATTATCTTGCCCAATCCATGAATCATTGTTTCAACACCCCTCCCAGCTAGAGGCGGGTTGAAAGTAGCCAAGGTTTTGTAGTTGTAATGAGGCATTGCTCGGTTTCAACACCCCTCCCAGCTAGAGGCGGGTTGAAAGGTGTTACTGAATTCTATCAAGCTTTTGACAAAGCAAAGTTTCAACACCCCTCCCAGCTAGAGGCGGGTTGAAAGAGCCTTTAAACGTGAAATGGTTTAGGGAAGGCAGAGAGTTTCAACACCCCTCCCAGCTAGGGGCGGGTTGAAAG

>NZ_CP040094|14|9|2848718-2849046|PILER-CR
GTTTCAACACCCCTCCCAGCTAGAGGCGGGTTGAAAG	AACTACATTATCTTGCCCAATCCATGAATCATT
GTTTCAACACCCCTCCCAGCTAGAGGCGGGTTGAAAG	TAGCCAAGGTTTTGTAGTTGTAATGAGGCATTGCTCG
GTTTCAACACCCCTCCCAGCTAGAGGCGGGTTGAAAG	GTGTTACTGAATTCTATCAAGCTTTTGACAAAGCAAA
GTTTCAACACCCCTCCCAGCTAGAGGCGGGTTGAAAG	AGCCTTTAAACGTGAAATGGTTTAGGGAAGGCAGAGA
GTTTCAACACCCCTCCCAGCTAGGGGCGGGTTGAAAG

>NZ_CP040094|14|13|2848718-2849046|CRISPRCasFinder
GTTTCAACACCCCTCCCAGCTAGAGGCGGGTTGAAAG	AACTACATTATCTTGCCCAATCCATGAATCATT
GTTTCAACACCCCTCCCAGCTAGAGGCGGGTTGAAAG	TAGCCAAGGTTTTGTAGTTGTAATGAGGCATTGCTCG
GTTTCAACACCCCTCCCAGCTAGAGGCGGGTTGAAAG	GTGTTACTGAATTCTATCAAGCTTTTGACAAAGCAAA
GTTTCAACACCCCTCCCAGCTAGAGGCGGGTTGAAAG	AGCCTTTAAACGTGAAATGGTTTAGGGAAGGCAGAGA
GTTTCAACACCCCTCCCAGCTAGGGGCGGGTTGAAAG

>NZ_CP040094|14|7|2848718-2849046|CRT
GTTTCAACACCCCTCCCAGCTAGAGGCGGGTTGAAAG	AACTACATTATCTTGCCCAATCCATGAATCATT
GTTTCAACACCCCTCCCAGCTAGAGGCGGGTTGAAAG	TAGCCAAGGTTTTGTAGTTGTAATGAGGCATTGCTCG
GTTTCAACACCCCTCCCAGCTAGAGGCGGGTTGAAAG	GTGTTACTGAATTCTATCAAGCTTTTGACAAAGCAAA
GTTTCAACACCCCTCCCAGCTAGAGGCGGGTTGAAAG	AGCCTTTAAACGTGAAATGGTTTAGGGAAGGCAGAGA
GTTTCAACACCCCTCCCAGCTAGGGGCGGGTTGAAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040094.1\|WP_174709816.1\|2833983_2836527_+\|magnesium-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319772
NZ_CP040094.1\|WP_174709822.1\|2846346_2848257_+\|hypothetical-protein	c2c5_V-U5	-	unknown
NZ_CP040094.1\|WP_174709829.1\|2858235_2859072_+\|trypsin-like-peptidase-domain-containing-protein	unknown	unknown	gnl\|CDD\|273938
NZ_CP040094.1\|WP_174709819.1\|2842347_2844021_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|275228
NZ_CP040094.1\|WP_174709826.1\|2855794_2855953_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174709828.1\|2857078_2857981_+\|PDZ-domain-containing-protein	unknown	unknown	gnl\|CDD\|273938
NZ_CP040094.1\|WP_174709831.1\|2859938_2861573_+\|alpha-D-glucose-phosphate-specific-phosphoglucomutase	unknown	unknown	gnl\|CDD\|100087
NZ_CP040094.1\|WP_174709815.1\|2830990_2833660_-\|cation-translocating-P-type-ATPase	unknown	unknown	gnl\|CDD\|319781
NZ_CP040094.1\|WP_174709818.1\|2841502_2842339_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|131694
NZ_CP040094.1\|WP_174709823.1\|2850711_2851917_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	unknown	unknown	gnl\|CDD\|366703
NZ_CP040094.1\|WP_174709718.1\|2838609_2839446_+\|TniB-family-NTP-binding-protein	unknown	unknown	gnl\|CDD\|225398
NZ_CP040094.1\|WP_174709825.1\|2854877_2855759_+\|ribosome-biogenesis-GTPase-YlqF	unknown	unknown	gnl\|CDD\|236570
NZ_CP040094.1\|WP_174709820.1\|2844023_2845793_-\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|341198
NZ_CP040094.1\|WP_174709824.1\|2854403_2854817_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319925
NZ_CP040094.1\|WP_174709814.1\|2828645_2830928_+\|amylo-alpha-1,6-glucosidase	unknown	unknown	gnl\|CDD\|225942
NZ_CP040094.1\|WP_174709821.1\|2845852_2846278_-\|MerR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133380
NZ_CP040094.1\|WP_174713620.1\|2852746_2854366_+\|NAD(P)H-hydrate-dehydratase	unknown	unknown	gnl\|CDD\|223141
NZ_CP040094.1\|WP_174709817.1\|2840006_2841491_-\|SAM-dependent-DNA-methyltransferase	unknown	unknown	gnl\|CDD\|223363
NZ_CP040094.1\|WP_174709830.1\|2859068_2859701_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP040094.1\|WP_174709827.1\|2856280_2856910_+\|TenA-family-protein	unknown	unknown	gnl\|CDD\|381703

Protein	Function_ID	Function_description	E-value
NZ_CP040094.1\|WP_174709816.1\|2833983_2836527_+\|magnesium-translocating-P-type-ATPase	gnl\|CDD\|319772	cd02077, P-type_ATPase_Mg, magnesium transporting ATPase (MgtA), similar to Escherichia coli MgtA and Salmonella typhimurium MgtA. MgtA is a membrane protein which actively transports Mg(2+) into the cytosol with its electro-chemical gradient rather than against the gradient as other cation transporters do. It may act both as a transporter and as a sensor for Mg(2+). In Salmonella typhimurium and Escherichia coli, the two-component system PhoQ/PhoP regulates the transcription of the mgtA gene by sensing Mg(2+) concentrations in the periplasm. MgtA is activated by cardiolipin and it highly sensitive to free magnesium in vitro. It consists of a transmembrane domain and three cytosolic domains: nucleotide-binding domain, phosphorylation domain and actuator domain, and belongs to the P-type ATPase type III subfamily. The P-type ATPases, are a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NZ_CP040094.1\|WP_174709829.1\|2858235_2859072_+\|trypsin-like-peptidase-domain-containing-protein	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	5.29577e-55
NZ_CP040094.1\|WP_174709817.1\|2840006_2841491_-\|SAM-dependent-DNA-methyltransferase	gnl\|CDD\|223363	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms].	7.86009e-87
NZ_CP040094.1\|WP_174709828.1\|2857078_2857981_+\|PDZ-domain-containing-protein	gnl\|CDD\|273938	TIGR02037, Probable_periplasmic_serine_protease_do/HhoA-like, periplasmic serine protease, Do/DeqQ family. This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures. [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides].	6.98127e-43
NZ_CP040094.1\|WP_174709831.1\|2859938_2861573_+\|alpha-D-glucose-phosphate-specific-phosphoglucomutase	gnl\|CDD\|100087	cd03085, PGM1, Phosphoglucomutase 1 (PGM1) catalyzes the bidirectional interconversion of glucose-1-phosphate (G-1-P) and glucose-6-phosphate (G-6-P) via a glucose 1,6-diphosphate intermediate, an important metabolic step in prokaryotes and eukaryotes. In one direction, G-1-P produced from sucrose catabolism is converted to G-6-P, the first intermediate in glycolysis. In the other direction, conversion of G-6-P to G-1-P generates a substrate for synthesis of UDP-glucose which is required for synthesis of a variety of cellular constituents including cell wall polymers and glycoproteins. The PGM1 family also includes a non-enzymatic PGM-related protein (PGM-RP) thought to play a structural role in eukaryotes, as well as pp63/parafusin, a phosphoglycoprotein that plays an important role in calcium-regulated exocytosis in ciliated protozoans. PGM1 belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
NZ_CP040094.1\|WP_174709815.1\|2830990_2833660_-\|cation-translocating-P-type-ATPase	gnl\|CDD\|319781	cd02089, P-type_ATPase_Ca_prok, prokaryotic P-type Ca(2+)-ATPase similar to Synechococcus elongatus sp. strain PCC 7942 PacL and Listeria monocytogenes LMCA1. Ca(2+) transport ATPase is a plasma membrane protein which pumps Ca(2+) ion out of the cytoplasm. This prokaryotic subfamily includes the Ca(2+)-ATPase Synechococcus elongatus PacL, Listeria monocytogenes Ca(2+)-ATPase 1 (LMCA1) which has a low Ca(2+) affinity and a high pH optimum (pH about 9) and may remove Ca(2+) from the microorganism in environmental conditions when e.g. stressed by high Ca(2+) and alkaline pH, and the Bacillus subtilis putative P-type Ca(2+)-transport ATPase encoded by the yloB gene, which is expressed during sporulation. This subfamily belongs to the P-type ATPases, a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
NZ_CP040094.1\|WP_174713620.1\|2852746_2854366_+\|NAD(P)H-hydrate-dehydratase	gnl\|CDD\|223141	COG0063, COG0063, Predicted sugar kinase [Carbohydrate transport and metabolism].	1.12826e-75
NZ_CP040094.1\|WP_174709823.1\|2850711_2851917_-\|peptidoglycan-DD-metalloendopeptidase-family-protein	gnl\|CDD\|366703	pfam01551, Peptidase_M23, Peptidase family M23. Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.	3.08458e-52
NZ_CP040094.1\|WP_174709718.1\|2838609_2839446_+\|TniB-family-NTP-binding-protein	gnl\|CDD\|225398	COG2842, COG2842, Uncharacterized ATPase, putative transposase [General function prediction only].	8.53631e-56
NZ_CP040094.1\|WP_174709825.1\|2854877_2855759_+\|ribosome-biogenesis-GTPase-YlqF	gnl\|CDD\|236570	PRK09563, rbgA, GTPase YlqF; Reviewed.	3.0041e-149
NZ_CP040094.1\|WP_174709820.1\|2844023_2845793_-\|restriction-endonuclease-subunit-S	gnl\|CDD\|341198	cd17517, RMtype1_S_EcoKI_StySPI-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR),similar to Escherichia coli str. K-12 substr. MG1655 S subunit (S.EcoKI) TRD2-CR2, Salmonella enterica subsp. enterica serovar Potsdam S subunit (S.StySPI) TRD2-CR2, and other TRD-CR's. Escherichia coli str. K-12 substr. MG1655 S subunit (S.EcoKI) recognizes 5'... AACNNNNNNGTGC ... 3' and Salmonella enterica subsp. enterica serovar Potsdam S subunit (S.StySPI) recognizes 5'... AACNNNNNNGTRC ... 3'. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. For example, S.EcoKI-TRD1 and S.StySPI-TRD1 both recognize AAC/GTT, S.EcoKI-TRD2 recognizes GCAC/GTGC and S.StySPI-TRD2 recognizes GYAC/GTRC. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2.It also includes TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases, such as Pseudomonas putida Jo 4-731 Type IIG restriction enzyme/N6-adenine DNA methyltransferase (RM.PpiI), and type I DNA methyltransferases such as Bacillus cereus BDRD-ST24 M subunit of Type I N6-adenine DNA methyltransferase (M.Bce24ORF51270P). RM.PpiI recognizes 5' ... GAACNNNNNCTC ... 3'.	1.10007e-26
NZ_CP040094.1\|WP_174709824.1\|2854403_2854817_+\|VOC-family-protein	gnl\|CDD\|319925	cd07264, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	1.23426e-12
NZ_CP040094.1\|WP_174709814.1\|2828645_2830928_+\|amylo-alpha-1,6-glucosidase	gnl\|CDD\|225942	COG3408, GDB1, Glycogen debranching enzyme [Carbohydrate transport and metabolism].	7.48818e-150
NZ_CP040094.1\|WP_174709821.1\|2845852_2846278_-\|MerR-family-transcriptional-regulator	gnl\|CDD\|133380	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators. Helix-turn-helix (HTH) transcription regulator GlnR and related proteins, N-terminal domain. The GlnR and TnrA (also known as ScgR) proteins have been shown to regulate expression of glutamine synthetase as well as several genes involved in nitrogen metabolism. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.	2.14534e-20
NZ_CP040094.1\|WP_174709818.1\|2841502_2842339_-\|hypothetical-protein	gnl\|CDD\|131694	TIGR02646, Hypothetical_protein_SMc04429, TIGR02646 family protein. Members of this uncharacterized protein family are found exclusively in bacteria. Neighboring genes in various genomes are also uncharacterized or may annotated as similar to restriction system proteins. [Hypothetical proteins, Conserved].	0.000575155
NZ_CP040094.1\|WP_174709819.1\|2842347_2844021_-\|AAA-family-ATPase	gnl\|CDD\|275228	TIGR04435, ABC_transporter, restriction system-associated AAA family ATPase. Members of this family are AAA family ATPases by homology. They occur regularly in a conserved gene neighborhood with the restriction (R), modification (M), and specificity (S) proteins of an apparent type I restriction enzyme system, plus one additional uncharacterized protein. It is not clear whether members of this family contribute to restriction per se, or to another process such as transfer of mobile elements.	1.3522e-31
NZ_CP040094.1\|WP_174709830.1\|2859068_2859701_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.85444e-43
NZ_CP040094.1\|WP_174709827.1\|2856280_2856910_+\|TenA-family-protein	gnl\|CDD\|381703	cd19368, TenA_C_AtTH2-like, TenA_C family similar to the N-terminal TenA_C domain of Arabidopsis thaliana thiamine requiring 2. This TenA family belongs to the TenA_C class as it has a conserved active site Cys residue; the double Glu residues identified in the active site of TenA_E from the archaeon Pyrococcus furiosus is conserved in this family. TenA_C proteins (EC 3.5.99.2) catalyze the hydrolysis of the thiamin breakdown product 4-amino-5-amino-methyl-2-methylpyrimidine (amino-HMP) to 4-amino-5-hydroxymethyl-2-methylpyrimidine (HMP) in a thiamin salvage pathway. Arabidopsis thaliana TH2 is an orphan enzyme thiamin monophosphate phosphatase which has a haloacid dehalogenase (HAD) family domain fused to its TenA_C domain, it's TenA_C domain has thiamin salvage hydrolase activity against amino-HMP. This family includes mostly uncharacterized single-domain TenA_C- like proteins; some however have additional domains such as a HAD family domain or a kinase domain It has also been suggested that TenA proteins act as transcriptional regulators based on changes in gene-expression patterns when TenA is overexpressed in Bacillus subtilis, however this effect may be indirect.	9.96455e-83

>NZ_CP040094.1|WP_174709822.1|2846346_2848257_+|hypothetical-protein
MSQITIQCRLVASESSRHQLWKLMAELNTPLINELLHQVNQHPEFETWRQKGKHSISIVKELCQPLKTDPRFIGQPGRFYASAIALVNYIYKSWFALMKRSQFQLEGKIRWLEMLNSDVELVESSGVSLNSLRTKSAEILVQFATLNTAETQSTNVKKAKKRKKSQNSDSDRNLSKNLFETYRNTEDNLTRCAISYLLKNGCKINEKEEDAKKFAQRRRKLEIQIERLREQLETRIPKGRGLTATKWLETLVVATHNVPTNEAEAKSWQDSLLRQSSKVPFPVAYETNEDMTWFKNQFGRICVKFNGLSEHSFQVYCDSRQLHWFQRFLEDQQIKKNSKNQHSSSLFTLRSGRIAWQEEEGKGDPWNVNRVTLYCSVDTRLWTTEGTNQVREEKAEKIAKIITNTKAKGKLNEEQQAHIKRQNSTLDTINNPFPRPTKPLYKGQSHILVGISLGLEKPATLAVVDGTTGQVITYRSIKQLLGDNYKLLNRQRQQKHSLSHQRQIAQTLAALNQFGESELGEYIDRLLAKEIIAIAQTYSAGSIVLPKLDNMREQVQSEIQAKAEQKSDSIEVQQKYAKQYRVSVHQWSYGRLMANIQSQAVKAGIVIEESKQPIRGSPQEKAKELAISAYYSRKIN
>NZ_CP040094.1|WP_174709821.1|2845852_2846278_-|MerR-family-transcriptional-regulator
MQETFFTSKEAAEITGCTLRQLQYWRERGVIVPVISDTGTGRSIYYSKSNLVELAAMSYWLSVGLSFDIASATLKTLKDQEPELFISGKGKRFMLLQAQERSLELVEFDRKKAIASLDEGKAVIPVWLDVIYQRLESKLSN
>NZ_CP040094.1|WP_174709820.1|2844023_2845793_-|restriction-endonuclease-subunit-S
MTLEDILISLETGKRPKGGVQGITDGIPSIGGEHLNSDGSFNFSSIKYVSADFAHQMSKGVISSEDILIVKDGATTSKTSYIGKDFPYKYAVINEHVFIVRVSNLINKKWIFYNLWAESGRQQILLDFRGAAQGGISSKFVQKVLVLIPPINEQNRIVAKIEELFSELDQGIENLRTACNQLKIYQQAVIKQAFEGKLTEQWRKTNADQLETSDKLRVSIEKTREKLYQQQINEWKQALNAWEATDKKGIKPRKLQKPRSLSHLTKQELRELPLLPDQWCWVKLSFIAENIQIGPFGSLLHKSDYITNGTPIINPSHINNKRIEPDWNLSVSPEKLSQLSNFIMRSGDIVIGRRGEMGRCAVVTQKEDGFLCGTGSLFIRLIPENNSDFYCYLLNSQRVKNFLSDQSIGTTMQNLNQEILHNVPVTLCTFSEQQKIVEEIESKMTVISKLENIIEENLQKAGVLRQSILKKAFSGHLVPPDPNDEPASILLERIRTERKKTPKPIRKTLKNKIKKDIATMPNLISVIESAENWLSAKDVFCQCGISDGAQTKDIEKLYLELRDLINEEIIKIERRGDEDWLCICSRKEE
>NZ_CP040094.1|WP_174709819.1|2842347_2844021_-|AAA-family-ATPase
MRLDQLWIGEFKNLRNVLIDFDEGHWVTVVIGWNGTGKSNVLEALATLFRDLITGENENKEKNKPSFSYRITYRCRQNSIYIDADIKRVKDAYQIYVKPINDNELSISSVQTSLLENELENTTIDRGKHITVSRFLKEQDQYLPKYIFGYYSGHSSRMEEIFREYLVKYDKKLRSGLDPGLRQLFYALPIHSQFVLLAFILQQDDIVNEFLDKQLGLDPESGIDSVLFVLRQPPWKSTVGDRRFWNARGIVSNFLARLYDISLAPIRIKRRESASLWNKQDREFLYLYIKDLATLRELVGQEPPREFFRDLESTYVSELIEEVRIRVKLRKNDGSVTFRELSEGEQQLLTVLGLLRFTAEEESLFLLDEPDTHLNPIWSVKYLDYLQKFVGMGDIDQKSTHVLLTTHNPLAIAELVKEQVQILKRDMDNLSISVTPPEEDPRGMGYAGILTSDMFDVPAALDNYTLGLLARKRELALSQEPLNDTQKKELENLNSELENYGFQHEARDPLFTEYLRARHDYQKALEEERATEIPPTEDQRQAALELMRQIMLRREDS
>NZ_CP040094.1|WP_174709818.1|2841502_2842339_-|hypothetical-protein
MRYIDYFDLKRIRCILPEDWLEEWLVKAKDAEEQVSLGIDIDKYAQVWRDFKPALESIIGQKCWYCETIQPRSDKEVDHFRPKKTLLDVIPKHTGYIWLAFNYKNFRYSCQFCNKIRTDKVNNTKGGKGSYFPLIDESKRAWKPGDEVSEKPKLLDPCVEEDVKLLDFNEDGTPCHIPSANADDQDRVKISIQRYHLHHSALVEDRKRLARDLEQAIVDAEYFFQTFATQQDQKILDKFQDKLKLLKTAINITSEYSLFAERYVAGKRNYDWIALVFI
>NZ_CP040094.1|WP_174709817.1|2840006_2841491_-|SAM-dependent-DNA-methyltransferase
MTPSQIVTKIWNFCNILRDAGVSYGDYLEQLTYLIFLKMAYEYANPPYNHDLGIPAKYNWQSLKTKRSEELEIHYIELLRELGKKKGILGHIFTKSQNKIQDPVMLSRVIDMIDNEAWVSMGADVKGDIYEGLLEKNAEDTKSGAGQYFTPRALIQVMVKCMRPEPFKTIADPACGTGGFFLETHNFLRKNYNLNEKQTQFLKHQTFYGHEIVPNTRRLCLMNMLLHNIGDINSEPTISPHDALAVDTKQRFDYVLANPPFGKKSSITATNGEGEQEKKDFTYNRKDFWATTSNKQLNFVQHIYTMLKTTGKAGVIVPDNVLFEGGAGETVRQNLLQKTDLHTILRLPTGIFYAHGIKANVLFFDNKPTRKEACTKEVWYYDYRTNIHNTLKKKSLQFEDLEDFIQCYNPEDRSKRGEIWHPETNTEGRWRKFSYEEIMTRDKTSLDISWLKDKSLSNLDNLPEPDELAAEIIENLEAGLNSFKAILNALENDT
>NZ_CP040094.1|WP_174709718.1|2838609_2839446_+|TniB-family-NTP-binding-protein
MTSKEAQAVAQQLGDIPVNSEKLQAEIQRLNRKGFVPLEQVQILHDWLEGKRQSRQSGRVVGESRTGKTMGCDAYRLRNKPSQVAGKPPTVPVAYIQIPQECGAKELFGVIMEHLKYQVTKGTVAEIRDRTLRVLKGCGVEMLIIDEADRFKPKTFAEVRDIFDRLEIAVILVGTDRLDAVIKRDEQVYNRFRSCHRFGKMSGEDFKRTVDIWEKQILRLPVASNLSSKTMLKTLGEATGGYIGLMDMILRETAIRALKKGLQKIDLETLKEVAAEYK
>NZ_CP040094.1|WP_174709816.1|2833983_2836527_+|magnesium-translocating-P-type-ATPase
MPQVIPSFWSLPAEQVLDQLKSSHQGLSRQEAQQRLTQYGANSLKQKRQSSTLLLLLNQFKSPIILILIAAAVLSSFLGDVIDTIIILTIVLISGLLGFWQERGARDAVTKLLALVQVKATVLRDGQSQEISNEEVVPGDIVLLAAGDSIPGDCLILESKDLSVNEAALTGETYPADKLGGVLPNEVGLSQRTNTLYMGTNAISGTAKAVVMQTGKQTEFGKVSERLKLRPPETEFERGLGKFGYFLMEVTLILVVLIFVANVYLQRPVLQSFLFSLALAVGLTPQLLPAIVSVNLARGAKQMAKKQVIVKRLSAIENFGSMNVFCTDKTGTLTEGEVKIHAAVDVEGKESDRVLLYAYLNAASESGYVNPIDAAIRQHKQFDISAYQKLDEVPYDFNRKRLSILLKKDNRNLIVTKGALKAILNVCSTVETGDGKTIDIAMQQDKIQLRAEELGSEGFRVLGVAYRNCVACVSSDDNRNSFSKDDETNMTFLGYLALFDPPKADIADTLKELGQLGVTTKMITGDSRAVAISIIEQVGLPKPKVLTGGELQELSDEALMHRVGKINVFAEVEPNQKERIIIALKKTGNVVGYLGDGINDASALHAADVGISVESSVDVAKEAADIVLMQKDLNVLVEGVKEGRVTFANTLKYVFMATSANFGNMFSMAGISLVLPFLPLLPSQILLTNLLTDFPEMTIATDRVDREMVNKPRRMNITFIRNFMVVFGLLSSVFDYLTFAALLLLLHANSAQFRTGWFMESVISASMIVLVIRTRQSILTSKPGKYLLTATIAIAIVTLLIPYTPVAGLLGFQPLPIEFLLVLAAIVGLYIICAENVKRIFYQHVQS
>NZ_CP040094.1|WP_174709815.1|2830990_2833660_-|cation-translocating-P-type-ATPase
MVSTVDLNTVAGLSEVEAIARLKQDGYNELSSARSRSILSFAWETVQDPIFLLLVGGGIIYWILGDLQEALILLGFVFFITGISLYQEGKTEHTLEALRDLSSPRALVIRDGQQKRIAGREVVRGDILVLAEGDRVPADAIVLSCTNLSTDESLLTGESLPVRKVVSTTLNNLAAAGTVEMARPGGDELPFVYSGTLVVQGQGIAQVQAVGAQTEMGKIGNALQKVKLEPTPLQQEMTRLVSRLFGIALLLCVAIVVIYGLTRGDWLKGFLAGITLAMAILPNEFPVVVTIFLALGAWRISQKHVLARRASAVETLGSATVLCVDKTGTLTLNQMAVQQLFAYNNAENAHPYNLELHLRESLPETVHELVEFCILASQRDPFDPMEKAFKELGDRYLAHTEHLHNDWILLREYPLSPHLLAMSHVWQSGDGKQYEIAAKGAPEAIADLCHFTLQQQRILATQISEMANQGLRVLGVAKASLLDAPPPFLPPHPSLNPNHLPDEQHDFPFQFLGLVGLSDPVRPNVAAAIQECYTAGIRVVMITGDYPGTAQTIARQIGLMQMGAILTGAELDLISDAELEQRIQSTNIFARAVTEQKLRLVNALKAKGEVVAMTGDGVNDASALKSAQIGIAMGRRGTDVARESAALVLLDDDFSSIVEAVKLGRRIFDNLRKAMAYLLAIHIPIAGMSLIPVLFKLPLVLLPVHVAFLHLIIDPACSIVLEAEPAEATVMQRPPRHPKEALFGRKTLGLAVLQGVGILLITLAIFVVALYRRQGELDARALTFTALILANLFLILSESSSSRLSLKILKSPNNALWWVVGGGLVFLAFVLYVPFLRQLFSFSFLHPIDLAICLGGGAIALLWFEQLKFLNRPQRVIQSKSIKPIQENL
>NZ_CP040094.1|WP_174709814.1|2828645_2830928_+|amylo-alpha-1,6-glucosidase
MTPDTLMTPEKIFLDGKTFIPAEQLPIPEWPCVVSERPQPTLTVKDDDLFFVTDTIGNISGCSLSEGNPSMGLFCCDTRFLNRLELQIEGRSPVLLSSTAGKGFSLSVLCTNPRIDERLRAETIGIRREIVLNGALFEEIEVSNYSTTTVNFELSISFDADFVDLFEVRGYDREKRGRLLRLLEPTTEEGIVNGVSPLPKDPSTFREESLTLAYQGLDGSVMESRILFQHRQPDYFKGYTAVWQLELASHETQKLGYRVNMLKNNQSSSTVSAAITLGQAKAAELMEEQHWVQQITRISSDKSTFNRVIERAEQDMYLLRQSFGKHKTVSAGVPWFSTLFGRDSLITASQTLMLNSQIAKETLILLATYQGKIDDEWREEEPGKILHELRLGEMARCQEIPHTPYYGTVDATPLWLMLYAEHYAWTHDQELLELLWPNALAAMDWIDRNTKQTSYLSYYRKSKRGLANQGWKDSGDCIVNHKGELANGPIALCEVQAYVYAAKMRLAEIARMKKRLDLADRWQEEARSLKLRFNRDFWVEDQDFCALALDGDGKPVDSITSNPGHCLHLGLFTHERAYSVAERLRAPDMFNGWGIRTLSSLSPAYNPMGYHIGSVWPHDNALIAMGLRSLGLIDQALELFQGLFDMTSQQPYERPPELFCGYERNGDNAPVQYPVACTPQAWATGSIFQLLQMMVNLVPDAQNNCLRIIDPALPESINRLSFHNLRVGPTILDLEFERSGTTTACRVAKKRGNLRVVIEA
>NZ_CP040094.1|WP_174709823.1|2850711_2851917_-|peptidoglycan-DD-metalloendopeptidase-family-protein
MRARFLGKNLIFGCLSLVFCCILWICLSLIPVHATSTGSIDTLRQQQQQMNQQRQSVVNDRDRLTNLQQEAQKHLTGLKQNLQTTDSYIQESESRLQLATQRLQQLETDLAVAQRSYEERQIATVARLRYLQRSPASVGWAVLLQSENISDFISRRHQLKLVYQADEQILVKLNTQANLINQQKTGVEQQKNEIALIREQLLAQKSGYQTQAESQSELIQRLNSDRLALEAAQNQLERESKNLEVLIQQKVGEARATEEAQTKTNSQTSVIVRGTGVMAYPSDASTSSPFGWRIHPILGYRRFHAGLDFAASYGSKIRAADSGRVIFAGWYGGYGRAVIIDHGNGLTTLYGHTSELYVSEGQAVERGQAIGAVGSTGFSTGPHLHFEVRRNGTPVDPANYL
>NZ_CP040094.1|WP_174713620.1|2852746_2854366_+|NAD(P)H-hydrate-dehydratase
MMQRQEKISQVIVTAGQMRDIEDRIFAAGMPVVALMEKVAGLVARRIQEIPPIPLKKGDYVASNTLLKKGLPQAVGSRVGILVGPGHNGGDALVVARELHFRGYEIWIYSPFSKFKELTSQHLQYAQSLGIPIYQTIEQLPDSDLLIDGLFGFGLERNLTDPIASAINQLNELSVPIYSIDLPSGLHTDTGVVLGTAIRATHTFCLGLWKLAFFQDRALEYIGKAELIDFDIPLADVEAVLKDAPSIKRITPTTALATLPLPRPPVTHKYKEGHLLLICGSRRYAGGAILTGLGARASGVGMLSIAVPESLKSLLVSHLPEALIVGCPETESGAIAQLQLPEKTDLISFSAIACGPGLTRDATPIVQEVIESDRPLILDADGLNILAQMGAIATLKKRLAVTVLTPHTGEFQRLFPDVADAKHDTVKAAQEAALQSGAVVLLKGARTAIANPQGGIWMITESTPALARGGSGDVLTGLLGGLLAQAATKQISVEDIVATAAWWHSQAGILAAQERTELGVDAFTLTQYLLKVLSLVTIP
>NZ_CP040094.1|WP_174709824.1|2854403_2854817_+|VOC-family-protein
MVFEYTNAFVTIGSVNFDKLVDFYTKFLEQKAVILIPNVYAEFNLVGMRLGIFKPKKTNESEFEAMSNDSPLCVYAKSKISLCLEVSNLKDAIAHLTALGYPPPGNISTASHGREIYAYDPDGNRLILHQAATTESH
>NZ_CP040094.1|WP_174709825.1|2854877_2855759_+|ribosome-biogenesis-GTPase-YlqF
MAITQNYRLNVIQWYPGHIAKAEKKLKEQLKRVDVVFEVRDARIPLATHHPQIGEWVEGKTRVLILNRVDMITPQMRSLWIDWFKRQGEVPYFTNAQHGKGIAEVARAAQAAGVELNQRRSDRGMLPRPVRAVVIGFPNVGKSALINRLLGRRVVESAARPGVTRQLRWVRISEHLELLDAPGVIPLRLEDQDAALKLAICDDIGEASYDNQLVAAALVDLFNYLEAVTTDLLPRKPLQSRYQLDSISDTGDTYLHALAEHRYKGDVERAARQLLTDFRKGLLGEMSLELPPN
>NZ_CP040094.1|WP_174709826.1|2855794_2855953_+|hypothetical-protein
MSRLKIWTFRLGNIWVAVVPQNSLHIVTNPVSYLFRRFPRSDRPSNEICRVL
>NZ_CP040094.1|WP_174709827.1|2856280_2856910_+|TenA-family-protein
MALSNELWAANQDLAQACLEHPFVQGIGDGILEQLKFAYYVGQDVFFLEAFARAYSIAAAKAPDWLGFTTFHNLASSVLEELRLHSNYASQWGVNLHSVEAGYATRRYTDFLLATAWSGDVGLTAVAMSPCMRLYGFLGEQLALHGIPNHQYADWIRTYSSAEFQSLIKQLETLVENYATNNAVVNSTYRYAMFCEHEFFQAAWISANK
>NZ_CP040094.1|WP_174709828.1|2857078_2857981_+|PDZ-domain-containing-protein
MSSLMALSNSLADTVEQAGSAVVAVNGGTRVSPSGIHWRNGIIVTSDESLQRYDDITITLSNGSTVPATLVGHDSSTDIAVFKLENLEIPVAKVGDAKMLKVGHLVLGLARGSEGDLRAAMGAVSVVSGAWRSMNGGNIDQFIRPDITLYSGFAGGPLVDAAGFVVGMNTSGRRGTALTIPSATVDRVVDQLVAKGRISKGYLGVGMQPVRLPNNLKTALNLTSATGVIVVNVESSGPADNAGVLLGDVLVRFDGVTVGDTGDVLALLNSSDRIGKTVNLQVVRGGVLIELAIAVGERSV
>NZ_CP040094.1|WP_174709829.1|2858235_2859072_+|trypsin-like-peptidase-domain-containing-protein
MANTTLTNIAAELTEVAAKLRDRTVKVKSGSLGIGSGVIWQSDGLIITNAHVATSNRATVELADGRVFDAVRTQFDPQQDLAALKIVATDLTAASIGNSEALRVGELVLAVGNPFAESGAVTTGIIYANNSRAVMADLQLYPGNSGGPLADCLGRVVGINTMIVNGLAVAVPSNTVERFLQRNNRPQLGVTLQPVLLGRRSLGLLVLSILPNSAAETAGVQIGDVLIGVSGRLFTNMNDLTKYLHDSKGSVPLQLLRGGQQLVIYVVVQSSKTAVEAT
>NZ_CP040094.1|WP_174709830.1|2859068_2859701_+|response-regulator-transcription-factor
MIRVMVVATSPVVRAGLSAVVATNPRLTVVGSASDLDVLAREVEQLQPDVVLVDLSSNLQQSVWEKLLLIQEKQYSLGTIAIIEELDSIDLETALRSGIRGILPSSSTELEIVAAVEAIAFGLVVLHPDAIELLSIREKVVANPVQTLTPREIEVLGMLGSGLGNKAIAKRLQISEHTVKFHLSSIFQKLSVSSRTEAVAVGVRLGLIML
>NZ_CP040094.1|WP_174709831.1|2859938_2861573_+|alpha-D-glucose-phosphate-specific-phosphoglucomutase
MNIRKVSTTPLSDQKPGTSGLRKSVKVFQQPHYLENFIQSIFDSVGDLHSQTLVLGGDGRYYNRQAIQIILKMAAANGIGRIKVGQRGILSTPATSAIIRKYQAIGGIILSASHNPGGPNGDFGVKYNISNGGPAPEKVTEAIYDRSKVIDSYQILEAPDVDLETLGESHLGETVVEVIDSVQDYQELMESLFDFERIQQLLTRGNFRFSIDALHAVAGPYAHAIFEQRLGAPVGTVQNGTPLEDFGGGHPDPNLVYAHDLVDILYGENAPDFGAAFDGDGDRNMILGRKFFVTPSDSLAVLAANAKLVPGYSEGLAGVARSMPTSQAVDRVAAQIGIESYETPTGWKFFGNLLDAGKATLCGEESFGTGSNHIREKDGLWAVLFWLNILAVRQQSVEQIVREHWQTYGRNYYSRHDYEEIQTEQGNTLIERLRSLLPNLKGKQFGNYQVEYSDDFSYTDPVDGSISEQQGVRIGFTDGSRIVVRLSGTGTQGATLRVYLESYEPDPAKHDLDPQQALASLITIVQEIAQIRELTGREQPTVIT

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Crispr_ID: NZ_CP040094_15

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040094_15

3153553-3154958

Orphan

N:A

Consensus_repeat	Method
GTTTCAATCCCTAATAGGGATTTTGATTAATTGCAAT	CRISPRCasFinder
GTTTCAATCCCTAATANGGATTTTGATTAATTGCAAT	CRT
GTTTCAATCCCTAATATGGATTTTGATTAATTGCAAT	PILER-CR

19 spacers

The CRISPR arrays of NZ_CP040094_15

>merge|NZ_CP040094|15|3153553-3154958|CRISPRCasFinder,CRT,PILER-CR
AGTTCAATCCCTAATAGGGATTTTGATTAATTGCAATGTGCTTGTCAGCGATACTTCTCGAATAGATTTTGTGTTTCAATCCCTAATAGGGATTTTGATTAATTGCAATAAAAATAGAGTTTACTGCTACTGCCAACGGTAGGGTTTCAATCCCTAATAGGGATTTTGATTAATTGCAATTCCCGCAAGTTTTGCTGCATTCCCAAGTGCTTGCCGTTTCAATCCCTAATAGGGATTTTGATTAATTGCAATTTGCATTGTTTTCATTCCTTAAATAGTAAAAAGTTGTTTCAATCCCTAATAGGGATTTTGATTAATTGCAATAATTCAGTACTTTGGTGGTATTCAAGTCTACTTTTTGCGTTTCAATCCCTAATAGGGATTTTGATTAATTGCAATGCGAGATATTTTACTCAAACGCCGCCCGGACAAGGTTTCAATCCCTAATAGGGATTTTGATTAATTGCAATAACTCTTGGTCAGAAATACGCTTTGTCCCTTTCTGTGGGTTTCAATCCCTAATAGGGATTTTGATTAATTGCAATCCTCAAAAATAGAGCATGGAGAGGTTGTTAGTTTGTTTCAATCCCTAATAGGGATTTTGATTAATTGCAATTATTATCATTTATATTAGTTACTTGTGTACAAAATGTTTCAATCCCTAATATGGATTTTGATTAATTGCAATTAATACCGTTATATTGGTAGACCTTTCATCAGAATGTTTCAATCCCTAATATGGATTTTGATTAATTGCAATTTCCCGCATGGGCCATCATTCACTTTTCCTCTTGTTTCAATCCCTAATATGGATTTTGATTAATTGCAATGCTCTAGGAAGCCGAAAATCAACGCGCTCGATTTGTTTCAATCCCTAATATGGATTTTGATTAATTGCAATAATTTAAGCGATTCATATACACCAATACTTACGTCAGTTTCAATCCCTAATATGGATTTTGATTAATTGCAATATGAATTAAAAACTGTAGAGGCGATCGCATCTCATGTTTCAATCCCTAATATGGATTTTGATTAATTACAATTAAAATCAAGCGGCTAGAGTCAGAAGCTAATGTTGGTTTCAATCCCTAATATGGATTTTGATTAATTGCAATATACGAAGAAATCGCAGCATCATCATTTTTAGATGTTTCAATCCCTAATATGGATTTTGATTAATTGCAATACGCAAAAGTTGGCGCTTAAAAGCATTAAGGATACGTTTCAATCCCTAATATGGATTTTGATTAATTGCAATGTGAAGAAGATAATTGAGAACTACTTTTTTATGCGTTTCAATCCCTAATATGGATTTTGATTAATTGCAATGAGAATTTATCAGGATTTTCATCAGATACATCGGCAAGTTTCAATCCCTAATATGGATTTTGATTAATTGCAAT

>NZ_CP040094|15|14|3153553-3154958|CRISPRCasFinder
AGTTCAATCCCTAATAGGGATTTTGATTAATTGCAAT	GTGCTTGTCAGCGATACTTCTCGAATAGATTTTGT
GTTTCAATCCCTAATAGGGATTTTGATTAATTGCAAT	AAAAATAGAGTTTACTGCTACTGCCAACGGTAGG
GTTTCAATCCCTAATAGGGATTTTGATTAATTGCAAT	TCCCGCAAGTTTTGCTGCATTCCCAAGTGCTTGCC
GTTTCAATCCCTAATAGGGATTTTGATTAATTGCAAT	TTGCATTGTTTTCATTCCTTAAATAGTAAAAAGTT
GTTTCAATCCCTAATAGGGATTTTGATTAATTGCAAT	AATTCAGTACTTTGGTGGTATTCAAGTCTACTTTTTGC
GTTTCAATCCCTAATAGGGATTTTGATTAATTGCAAT	GCGAGATATTTTACTCAAACGCCGCCCGGACAAG
GTTTCAATCCCTAATAGGGATTTTGATTAATTGCAAT	AACTCTTGGTCAGAAATACGCTTTGTCCCTTTCTGTGG
GTTTCAATCCCTAATAGGGATTTTGATTAATTGCAAT	CCTCAAAAATAGAGCATGGAGAGGTTGTTAGTTT
GTTTCAATCCCTAATAGGGATTTTGATTAATTGCAAT	TATTATCATTTATATTAGTTACTTGTGTACAAAAT
GTTTCAATCCCTAATATGGATTTTGATTAATTGCAAT	TAATACCGTTATATTGGTAGACCTTTCATCAGAAT
GTTTCAATCCCTAATATGGATTTTGATTAATTGCAAT	TTCCCGCATGGGCCATCATTCACTTTTCCTCTT
GTTTCAATCCCTAATATGGATTTTGATTAATTGCAAT	GCTCTAGGAAGCCGAAAATCAACGCGCTCGATTT
GTTTCAATCCCTAATATGGATTTTGATTAATTGCAAT	AATTTAAGCGATTCATATACACCAATACTTACGTCA
GTTTCAATCCCTAATATGGATTTTGATTAATTGCAAT	ATGAATTAAAAACTGTAGAGGCGATCGCATCTCAT
GTTTCAATCCCTAATATGGATTTTGATTAATTACAAT	TAAAATCAAGCGGCTAGAGTCAGAAGCTAATGTTG
GTTTCAATCCCTAATATGGATTTTGATTAATTGCAAT	ATACGAAGAAATCGCAGCATCATCATTTTTAGAT
GTTTCAATCCCTAATATGGATTTTGATTAATTGCAAT	ACGCAAAAGTTGGCGCTTAAAAGCATTAAGGATAC
GTTTCAATCCCTAATATGGATTTTGATTAATTGCAAT	GTGAAGAAGATAATTGAGAACTACTTTTTTATGC
GTTTCAATCCCTAATATGGATTTTGATTAATTGCAAT	GAGAATTTATCAGGATTTTCATCAGATACATCGGCAA
GTTTCAATCCCTAATATGGATTTTGATTAATTGCAAT

>NZ_CP040094|15|8|3153553-3154958|CRT
AGTTCAATCCCTAATAGGGATTTTGATTAATTGCAAT	GTGCTTGTCAGCGATACTTCTCGAATAGATTTTGT
GTTTCAATCCCTAATAGGGATTTTGATTAATTGCAAT	AAAAATAGAGTTTACTGCTACTGCCAACGGTAGG
GTTTCAATCCCTAATAGGGATTTTGATTAATTGCAAT	TCCCGCAAGTTTTGCTGCATTCCCAAGTGCTTGCC
GTTTCAATCCCTAATAGGGATTTTGATTAATTGCAAT	TTGCATTGTTTTCATTCCTTAAATAGTAAAAAGTT
GTTTCAATCCCTAATAGGGATTTTGATTAATTGCAAT	AATTCAGTACTTTGGTGGTATTCAAGTCTACTTTTTGC
GTTTCAATCCCTAATAGGGATTTTGATTAATTGCAAT	GCGAGATATTTTACTCAAACGCCGCCCGGACAAG
GTTTCAATCCCTAATAGGGATTTTGATTAATTGCAAT	AACTCTTGGTCAGAAATACGCTTTGTCCCTTTCTGTGG
GTTTCAATCCCTAATAGGGATTTTGATTAATTGCAAT	CCTCAAAAATAGAGCATGGAGAGGTTGTTAGTTT
GTTTCAATCCCTAATAGGGATTTTGATTAATTGCAAT	TATTATCATTTATATTAGTTACTTGTGTACAAAAT
GTTTCAATCCCTAATATGGATTTTGATTAATTGCAAT	TAATACCGTTATATTGGTAGACCTTTCATCAGAAT
GTTTCAATCCCTAATATGGATTTTGATTAATTGCAAT	TTCCCGCATGGGCCATCATTCACTTTTCCTCTT
GTTTCAATCCCTAATATGGATTTTGATTAATTGCAAT	GCTCTAGGAAGCCGAAAATCAACGCGCTCGATTT
GTTTCAATCCCTAATATGGATTTTGATTAATTGCAAT	AATTTAAGCGATTCATATACACCAATACTTACGTCA
GTTTCAATCCCTAATATGGATTTTGATTAATTGCAAT	ATGAATTAAAAACTGTAGAGGCGATCGCATCTCAT
GTTTCAATCCCTAATATGGATTTTGATTAATTACAAT	TAAAATCAAGCGGCTAGAGTCAGAAGCTAATGTTG
GTTTCAATCCCTAATATGGATTTTGATTAATTGCAAT	ATACGAAGAAATCGCAGCATCATCATTTTTAGAT
GTTTCAATCCCTAATATGGATTTTGATTAATTGCAAT	ACGCAAAAGTTGGCGCTTAAAAGCATTAAGGATAC
GTTTCAATCCCTAATATGGATTTTGATTAATTGCAAT	GTGAAGAAGATAATTGAGAACTACTTTTTTATGC
GTTTCAATCCCTAATATGGATTTTGATTAATTGCAAT	GAGAATTTATCAGGATTTTCATCAGATACATCGGCAA
GTTTCAATCCCTAATATGGATTTTGATTAATTGCAAT

>NZ_CP040094|15|10|3153555-3154958|PILER-CR
TTCAATCCCTAATAGGGATTTTGATTAATTGCAATGT	GCTTGTCAGCGATACTTCTCGAATAGATTTTGTGT
TTCAATCCCTAATAGGGATTTTGATTAATTGCAATAA	AAATAGAGTTTACTGCTACTGCCAACGGTAGGGT
TTCAATCCCTAATAGGGATTTTGATTAATTGCAATTC	CCGCAAGTTTTGCTGCATTCCCAAGTGCTTGCCGT
TTCAATCCCTAATAGGGATTTTGATTAATTGCAATTT	GCATTGTTTTCATTCCTTAAATAGTAAAAAGTTGT
TTCAATCCCTAATAGGGATTTTGATTAATTGCAATAA	TTCAGTACTTTGGTGGTATTCAAGTCTACTTTTTGCGT
TTCAATCCCTAATAGGGATTTTGATTAATTGCAATGC	GAGATATTTTACTCAAACGCCGCCCGGACAAGGT
TTCAATCCCTAATAGGGATTTTGATTAATTGCAATAA	CTCTTGGTCAGAAATACGCTTTGTCCCTTTCTGTGGGT
TTCAATCCCTAATAGGGATTTTGATTAATTGCAATCC	TCAAAAATAGAGCATGGAGAGGTTGTTAGTTTGT
TTCAATCCCTAATAGGGATTTTGATTAATTGCAATTA	TTATCATTTATATTAGTTACTTGTGTACAAAATGT
TTCAATCCCTAATATGGATTTTGATTAATTGCAATTA	ATACCGTTATATTGGTAGACCTTTCATCAGAATGT
TTCAATCCCTAATATGGATTTTGATTAATTGCAATTT	CCCGCATGGGCCATCATTCACTTTTCCTCTTGT
TTCAATCCCTAATATGGATTTTGATTAATTGCAATGC	TCTAGGAAGCCGAAAATCAACGCGCTCGATTTGT
TTCAATCCCTAATATGGATTTTGATTAATTGCAATAA	TTTAAGCGATTCATATACACCAATACTTACGTCAGT
TTCAATCCCTAATATGGATTTTGATTAATTGCAATAT	GAATTAAAAACTGTAGAGGCGATCGCATCTCATGT
TTCAATCCCTAATATGGATTTTGATTAATTACAATTA	AAATCAAGCGGCTAGAGTCAGAAGCTAATGTTGGT
TTCAATCCCTAATATGGATTTTGATTAATTGCAATAT	ACGAAGAAATCGCAGCATCATCATTTTTAGATGT
TTCAATCCCTAATATGGATTTTGATTAATTGCAATAC	GCAAAAGTTGGCGCTTAAAAGCATTAAGGATACGT
TTCAATCCCTAATATGGATTTTGATTAATTGCAATGT	GAAGAAGATAATTGAGAACTACTTTTTTATGCGT
TTCAATCCCTAATATGGATTTTGATTAATTGCAATGA	GAATTTATCAGGATTTTCATCAGATACATCGGCAAGT
TTCAATCCCTAATATGGATTTTGATTAATTGCAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040094.1\|WP_174710023.1\|3140769_3143685_+\|glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|235751
NZ_CP040094.1\|WP_174710027.1\|3145386_3145692_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174710034.1\|3157348_3157591_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174710039.1\|3166379_3167231_-\|nitrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|130251
NZ_CP040094.1\|WP_174710037.1\|3162230_3162428_+\|high-light-inducible-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174710036.1\|3161971_3162184_+\|high-light-inducible-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174713634.1\|3162941_3163559_-\|universal-stress-protein	unknown	unknown	gnl\|CDD\|366180
NZ_CP040094.1\|WP_174710032.1\|3151826_3153413_+\|alkaline-phosphatase	unknown	unknown	gnl\|CDD\|226070
NZ_CP040094.1\|WP_174710026.1\|3144730_3145087_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174710025.1\|3144032_3144623_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|99749
NZ_CP040094.1\|WP_174713633.1\|3155446_3156277_+\|dienelactone-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223489
NZ_CP040094.1\|WP_174710035.1\|3158226_3161343_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|226167
NZ_CP040094.1\|WP_174710033.1\|3156287_3157229_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226040
NZ_CP040094.1\|WP_174710031.1\|3151048_3151600_+\|PEP-CTERM-sorting-domain-containing-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174710038.1\|3164849_3166292_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270271
NZ_CP040094.1\|WP_174710028.1\|3145963_3148189_-\|adenylate/guanylate-cyclase-domain-containing-protein	unknown	unknown	gnl\|CDD\|226703
NZ_CP040094.1\|WP_174713635.1\|3163912_3164749_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224041
NZ_CP040094.1\|WP_174710029.1\|3148194_3149040_-\|DUF928-domain-containing-protein	unknown	unknown	gnl\|CDD\|368720
NZ_CP040094.1\|WP_174710024.1\|3143681_3144029_+\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|369571
NZ_CP040094.1\|WP_174710030.1\|3149343_3150624_+\|3-phosphoshikimate-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|235037

Protein	Function_ID	Function_description	E-value
NZ_CP040094.1\|WP_174710023.1\|3140769_3143685_+\|glycerol-3-phosphate-acyltransferase	gnl\|CDD\|235751	PRK06241, PRK06241, phosphoenolpyruvate synthase; Validated.	3.31034e-89
NZ_CP040094.1\|WP_174710025.1\|3144032_3144623_-\|Uma2-family-endonuclease	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	1.07895e-44
NZ_CP040094.1\|WP_174713634.1\|3162941_3163559_-\|universal-stress-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	1.48207e-06
NZ_CP040094.1\|WP_174710032.1\|3151826_3153413_+\|alkaline-phosphatase	gnl\|CDD\|226070	COG3540, PhoD, Phosphodiesterase/alkaline phosphatase D [Inorganic ion transport and metabolism].	0
NZ_CP040094.1\|WP_174710039.1\|3166379_3167231_-\|nitrate-ABC-transporter-permease	gnl\|CDD\|130251	TIGR01183, Nitrate_transport_permease_protein_NrtB, nitrate ABC transporter, permease protein. This model describes the nitrate transport permease in bacteria. This is gene product of ntrB. The nitrate transport permease is the integral membrane component of the nitrate transport system and belongs to the ATP-binding cassette (ABC) superfamily. At least in photosynthetic bacteria nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA, ntrB, ntrC, ntrD, narB. Functionally ntrC and ntrD resemble the ATP binding components of the binding protein-dependent transport systems. Mutational studies have shown that ntrB and ntrC are mandatory for nitrate accumulation. Nitrate reductase is encoded by narB. [Transport and binding proteins, Anions].	2.41023e-69
NZ_CP040094.1\|WP_174713633.1\|3155446_3156277_+\|dienelactone-hydrolase-family-protein	gnl\|CDD\|223489	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism].	6.43621e-75
NZ_CP040094.1\|WP_174710035.1\|3158226_3161343_-\|MFS-transporter	gnl\|CDD\|226167	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only].	7.14975e-06
NZ_CP040094.1\|WP_174710033.1\|3156287_3157229_-\|hypothetical-protein	gnl\|CDD\|226040	COG3509, LpqC, Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism].	1.13955e-53
NZ_CP040094.1\|WP_174710038.1\|3164849_3166292_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270271	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily. This subfamily includes nitrate (NrtA) and bicarbonate (CmpA) receptors. These domains are found in eubacterial perisplamic-binding proteins that serve as initial receptors in the ABC transport of bicarbonate, nitrate, taurine, or a wide range of aliphatic sulfonates, while other closest homologs are involved in thiamine (vitamin B1) biosynthetic pathway and desulfurization (DszB). After binding their ligand with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. These binding proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	8.54418e-68
NZ_CP040094.1\|WP_174710028.1\|3145963_3148189_-\|adenylate/guanylate-cyclase-domain-containing-protein	gnl\|CDD\|226703	COG4252, COG4252, Predicted transmembrane sensor domain [Signal transduction mechanisms].	1.94293e-150
NZ_CP040094.1\|WP_174713635.1\|3163912_3164749_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	1.27214e-128
NZ_CP040094.1\|WP_174710029.1\|3148194_3149040_-\|DUF928-domain-containing-protein	gnl\|CDD\|368720	pfam06051, DUF928, Domain of Unknown Function (DUF928). Family of uncharacterized bacterial protein.	7.94928e-90
NZ_CP040094.1\|WP_174710030.1\|3149343_3150624_+\|3-phosphoshikimate-1-carboxyvinyltransferase	gnl\|CDD\|235037	PRK02427, PRK02427, 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional.	1.49637e-171
NZ_CP040094.1\|WP_174710024.1\|3143681_3144029_+\|cupin-domain-containing-protein	gnl\|CDD\|369571	pfam07883, Cupin_2, Cupin domain. This family represents the conserved barrel domain of the 'cupin' superfamily ('cupa' is the Latin term for a small barrel).	8.33056e-13

>NZ_CP040094.1|WP_174710032.1|3151826_3153413_+|alkaline-phosphatase
MVDYQNFEQFLHSRMKRRNLIIGAGALSGLAIANQFSHQTAIAKTRFSNYPFTLGVASGDPDSSSVVIWTRLAPEPLEGGGMPPVNVPIRWEVSTDPDMRRIISRGTVLATPELAHSVRVIVEGLQSDTWYWYRFLVGQDASPIGRTRTAPLANSYLKKLNFALVSCQHYEQGYFTAYKYLAQDDLDLVVHVGDYIYEGGISNNRPRKHNSAEILTLEDYRNRHALYKTDTNLQAAHAAFPWIVTWDDHEVENNYANYISEVDTEPDQDPAIFLQRRAVAYQAYYEHMPLRPFSRPVGPDMQLYRRLSFGNLATFHVLDTRQYRTDQPCGDGTKQRPCGEDPNGTITGKRQEDWLYDGLDRSQAKWNVLAQQVIVAQIDTKAGPGETYSMDKWDGYVASRDRLMRFLEQRKPSNPVVLSGDVHSNWAINLKADFNNPGSTTVGSEFVCTSITSGGDGADTNLNVQAYLPENPHIKFFNGQRGYVRCGLTPTTYKTDYLVLSNVTTPFGTISKRASFLVEDGRPGIQQV
>NZ_CP040094.1|WP_174710031.1|3151048_3151600_+|PEP-CTERM-sorting-domain-containing-protein
MKIVPKLAIAAASLTLGFAVVDAKSVSAAIINYAFTVDSPVTKGNGFFSFDDSTLSNDYTPEATIKSLSFQFDGDSSIYTEQDDTNYPDFPVAFQTTSLTGQTSFALDYLFNDKSNPASSISYEIIGEDFTIFSRTSPDAEPISGKVSYTQVPEPTPLVGALFACTLGLMMKRKVTLMKKVKI
>NZ_CP040094.1|WP_174710030.1|3149343_3150624_+|3-phosphoshikimate-1-carboxyvinyltransferase
MDTIAIPALNRPVDATVEIPGSKSLTNRALLVAALAKGDSILENALFSEDSEYFVKCVEQLGIPITLNPHQAQIQVGGRGGDIPAKQADLFVGLAGTAARFISALVALGNGEYRLDGVPRMRERPMGDMLTVLQTGGATVNFEGNSGFMPYTIYSQGFAGGNFRLKANQTSQQLSALLMIAPYAQQDTIIEVEGTLVSQSYVKMTCRLMADFGVEVNQIGDNQFQIKAGQRYQARHYTVEPDASNASYFFAAAAVTGGRVRVKHLTKQSCQGDILWLDVLEQMGCEVKASDDYTEVTGPKQLQGIDIDMNDISDLVQTLGAIAPFASSPITIRNVEHIRYKETDRIRAVVTELRRLGVQVEEFPDRLKIEPGPITPAEIETYHDHRMAMAFAVTGLKVPGIIIKDPGCTAKTFPDYFTRFFKMLEE
>NZ_CP040094.1|WP_174710029.1|3148194_3149040_-|DUF928-domain-containing-protein
MKRIKPFVYFLTFFLPLGLLSALTAQVYAQSYHPNKTWQISQAFKPPQRGKPPASAGGSTRGGSCLIGKKLITPLLPPDKLGLTFAQHPAFFWYVPPIQVKTAKFVLLAEDQNVFYETSFKLPAKPGIISFKLPESSPGLTVGKTYHWYLTIVCNTQDSSDNPTVEGWVERTQPGSSLSEALVKANVYKLPTIYAEAGIWHEALTSLVQLRRTEPNNFKAKLDWRQFLKSVGLSAIASEPLIDCCTLRKEGQGALGIGHEAKAEFPTLVQTRFIASLLIPH
>NZ_CP040094.1|WP_174710028.1|3145963_3148189_-|adenylate/guanylate-cyclase-domain-containing-protein
MWAKLKSQIWQWRGVLLAVPNITALVIALRLTGLLQLLELAALDQFFLLRPQESPDTRIVIVEINEADVRKQGQWPMSDGKLASLLEKIKQQQPRAIGLDIYRDLPVNPGHEALLKVFKSTPNLIGVQKVSDTVDSSAVDSSPELKRLDQIGSNDLPIDGDGKIRRSLLYVNLNNDQILESFGLKLALLYLKPEGITAKPAATNSNYLQLNQGVFPIFEANDGGYVRADAGSYQVLLNYRGRIQQFTKVSLGEVQDKPIPPDLMRDKVVLIGATAESLKDLFYTPYSSNVLTDPERMAGITIHANLISQILSAAMDGRSSIKCLPEPLEWLSILIWSIIGASLCWLQRHSSNQKILMAVSVFLAGGGLIGGSFLAFLAGWWIPVVPSLLAFAGSAIALTQYIAQSATEMRKTLGRYLTDEIVANILETPSGLKLGGERRKVTVLVSDLRGFSAISEQLPPEEVVKILNLYLGIMTDVINQYKGTINEFMGDGIFVIFGAPISRKDDSQRAIACAIAMQLAMQQVNEKNRQMNFPILEMGIGMNTGEAVAGNVGSQKRAQYTVIGSHVNLAARIESYTVGGQILISENTCKDAHIDLQIAGQLQIEPKGIKHPVTICEIRGIGGKYNLFLPDDDDEMIVLNQELTVEYSILQGKHAVGTVFLGALISLSEKKAQLRSPHSLEILSNLKLKLLIAAEMATEEHIYAKVIQQSHVDEHLFLLRFTAVPSKAMAMLNAFRQPESG
>NZ_CP040094.1|WP_174710027.1|3145386_3145692_-|hypothetical-protein
MTNVNNFQRLVELANEYGIICQPTPEECLIASLPGDEDFLLAFTWSGAVEGEPPEHELIAISVQDIVKEVTVAAWQIPIYLFGNVLRQAQMLVAAHKDFFS
>NZ_CP040094.1|WP_174710026.1|3144730_3145087_-|hypothetical-protein
MNKFLLSLLSSPVLISSILSMGVMLNQAQAIEPQSATQTTDRLSCIRNKHKVGLVCARASVLAQIPNYQREIEFSKEDAPMLEFNNEESDMAIDLFGCDCAACINSLRQMRGATPLVY
>NZ_CP040094.1|WP_174710025.1|3144032_3144623_-|Uma2-family-endonuclease
MTFSQSHPYLSPEEYLESEKSSPIKHEYIQGRIYAMAGASDAHVTITANLVTLLRNHIRGTGCRVYVADMKARIESLNLFYYPDIMVTCDQRDTNFEYFKRYPSLIIEVLSPSTEALDRGDKFSDYQELETLQEYVLISQNRQRVDCFRRNAESRWELYSYRVNQELQFTSLNFSCSLTDIYEDVSFPETFNPTSA
>NZ_CP040094.1|WP_174710024.1|3143681_3144029_+|cupin-domain-containing-protein
MITNSLKDLPEDSVSHNPEIKKKVMLRFGDLPHLTNFSQARFAPGQTAPAHAHQDMCEVFFVEAGSGVIHIDGTEYPLLPGNCVAIEVGEVHEVVNSGSTELVLTYFGLRVEKSR
>NZ_CP040094.1|WP_174710023.1|3140769_3143685_+|glycerol-3-phosphate-acyltransferase
MFEPWGVLVILIICPLLGGLPLIAWIAYALTGKQLSQVGTRNISVSAAFYHGGKFVGILAVLSEAFKGIAAVLLTRLVFPEGSFWELIALIALVIGRYWIGRGAGTTNVVWGFVVHDPLVAIFVSFFAGISFIILQSKQAVKFGVLLLFPLFVAILHLSDIPRMLAAVALAGLMAWIYAKIPDDMNLPVQEAQTESQAMLEFLRGDVYDGLRQRAMVSLDEELDAAIVGEKAATLSQIKRWGYPVPKGWVLAPIDDPKVLTEFLQPSELSPLVVRSSAIGEDSEQASAAGQYETVLNVTSPEALQQAIAQVQASYNHPSAVQYRRDRGSNDTAMAVLIQQQVQSVYSGVAFSRDPITQQGDAIIIEALPGSPTQIVSGKVTPEQYRAFVVETEKSSSVQLEGTGRIPSALIKQVAYLAHRLEKRYHGTPQDIEWSYDGQTLWVLQSRPITTLLPIWTRKIAAEVIPGVIHPLTWSINRPLTCGVWGEFFTLVLGERALGLDFNETATLHYSRAYFNASLLGNIFLRMGLPPESLEFLTRGAKLSKPSLQSTWENLPGLGRLLKRELNLEKDFKQDYHQRFIPGLSQLAQENVENLEPAKLLIRIDFILELLRHGTYYSILAPLSAALRQAIFRVKDGQIDNSVTPEVAALRSLSAIATDAKQVLLEFEPQQVFEQLKQTPEGEKILQEFDELLQDYGYLSEVGTDISVPTWRENPQMIKQMFVQLMQGNEPQAGAKDAINSIFAGKRKRSFVQRRVDIKGRVTEVYSRLLAELRWSFVALEKIWLKSGLLQNAGDIFFLNFDEVRRLVVGDDSRLIEELDKLVESRRSQFVQDSEFIQIPLLVYGNTPPHPLAPSPLYSDQILQGIGASHGQAEGRIKVLRNLQDVPEIDRDTILVVPYTDSGWAPLLLRAGGLIAEVGGRLSHGAIVAREYGIPAVMDVRGATWLLQDGQRVRIDGSRGIVELSNDLRPE
>NZ_CP040094.1|WP_174713633.1|3155446_3156277_+|dienelactone-hydrolase-family-protein
MKEITRRKFIATSTLATGFALAVQPISAQVTATDAKGLVAGAVKIPVKDGEIPAYRAAPATGENFPIVLVIQEIFGVHEHIQDVTRRFAQLGYLAIAPELFIRQGDVTKLSSIDEIRPIVAKVPDSQVLSDLDATVKWAVKSAKGNAEKLAVTGFCWGGRITWLYAAHNPKVKAGGAWYGRLVGDATELQPKYPIDIASKLTVPILGLYGGKDTGIPLNTVEQMRDRLKSSSSKSEIIVYPDAPHAFFADYRPSYREKDAKDGWKRLLAWFKQNGV
>NZ_CP040094.1|WP_174710033.1|3156287_3157229_-|hypothetical-protein
MNIYQNSRILKKLLILLLGITLLTASDSIQAEEKNITKAKILSGDNYGELYDQGKLRTYYLYTPKSYNPDRPMPLVLVFHGDDGNGKSISNVTRFNELADKKGFIVVYPDGIDQKWSLRGNAQGRVDDVSFVNALINHLQQQINIDSHKIYATGFSRGAILTQALACKLPDKISGFASVAGSLPVRLKSNCQPRTSISMLTINGTNDRDVLYEGDDHTQRGALLSISDMVDFWRSHDQCTSSNKSPDFSEDKVKTAIYTGCSGNSEVWQLAVINGGHFWPGGSSTDKSLNKFNTNLGLNASETIWNFFQSHSS
>NZ_CP040094.1|WP_174710034.1|3157348_3157591_-|hypothetical-protein
MKRILLGTLLALPLAISSLPSQASAAEILVKPNFHRVAVVHKPVVTRFQRKLIPAHWETVRRGNRWVKVRVPARYVNVRV
>NZ_CP040094.1|WP_174710035.1|3158226_3161343_-|MFS-transporter
MFQSTEIMLGLYKPLLWLAQVPVDPSNVTPAQASVLTSGPRFFVALISGVILAFAFQLVLTNLSLAAGISYLGHSSDSDSDSGEAGSLGGSIRKIGTAVGIWTLVTVTIALLIACFLAVKLSLVILDPGLGAILGLVIWGAYFLLLVWVSSTTVGSLIGSVVNTATSGFQAIMGTATAALGAKAVNNQVVATAEAAAAAVRRELGSGIDPGSIRENIEDYLDKLRPPEFDVSKIRSDFENLLNDPQLKAIAGTPDIRNIDRQKFIELVSSRTDLSKKDVTRIADTLYKVWQQVVSQHSPTEDRMGELMDYLKSLPAGQSKTDELNAKLDRLVAETRGSKEADQKASTGPIQSTLQQGLSALTGIVLGRTDLSDLDVEKILGSLTTAKDKVTQQADKLGLPTPSQPYSPIRSDVENYLYNTYAWQLSPEKIAQEFRDVIYDPAADPGIVRRELERLSRNDFVKILQQRGLLTQTQIQRIADRLEIVRKDVLVTVTGIEEREIVQDLQRAVESYLLVTPKTDLTPVGIEQKFKPLLQDPDADYETLTLRLAHIERQEIREILLERNDVQLYEVDSILDELEKQRDRVLVESKGLAEQAQYQAETLWLNVESYLRNTGKSELNPDAIRAEFKKLLEDPQAGITSIRARLSRFDRDTLVQLLSQRQDLSEDQVNQIINAAEESWHNIRHTPQAVVDKAKEQYDSVTTTIADYLRNTGKQELNPEGIQRDLSKLFENPKEGASALRRRLSQLDRDTLVKLLSQRQDLSEQQVNEIIDSTQTSIRNFVRAPRRLATRTQQRAETFKAYLEEYLRQTGKEELNPEGIKRDLQLLLHDPRVGVESFSDRLSHFDRSTIIALLKIREDMSDEEAARIADNIVSVRDQFVEQVRNIQRGIQDAIDGVFARIRNYLNSLDRPELNYDSIKRDVRTFFDDPQAGFDALRDRLSSFDRETLVAIMSSREDISEEDANRIIDQIERARNTVLQRAERIQQEAQRRLEQVKHQAQRQAEETRKAAATAAWWLFATASVSAVFSALGGALAARP
>NZ_CP040094.1|WP_174710036.1|3161971_3162184_+|high-light-inducible-protein
MATQETRSSTDLPPVAPEYNGVDRNAFLFGWTPQAEIWNGRLAAIGFLAYLLWDLAGYSVLRDVLHLIGY
>NZ_CP040094.1|WP_174710037.1|3162230_3162428_+|high-light-inducible-protein
METRSSTDLSPKAYNGVDRNAFLFGWTPQAEIWNGRLAAIGFLAYLLWDIAGYSVLRDVLHLISY
>NZ_CP040094.1|WP_174713634.1|3162941_3163559_-|universal-stress-protein
MLARLQSATGRDDLIEQMVLVPEPKKYFSKEPQKAKAVNLIVAYDASPNSHTALDIAFWIAHQTRLATNAEVTVQAVYVVEDNQSSEYPNILNFPQKLSLECQISEVSKSVTRVLTQPKLQTVVTPLQQADIILWQARSLAEEWQGSFKSHLRFGSICAELRQVVESEAADILFLGCKSVNHPMIEGLGSNFPCAVLGIPSCIDE
>NZ_CP040094.1|WP_174713635.1|3163912_3164749_-|ABC-transporter-ATP-binding-protein
MEYTSLPINTQTGVLPRTGFLEIENLVKSYPTPDKDNFVVLDGVNLTIGEDEYISVIGHSGCGKSTLLKIIAGLEKATSGSVRLDGKEIRQPGAERMMVFQNYSLLPWLTVRENIRLAVDEVLKNANRAEKISIVNEHLAMVNLTAAADKYPDEISGGMKQRVGIARALAIRPKMLLMDEPFGALDALTRGKLQRQVLDIWESNRQAVMMITHDVDEAIYMSDRIVLMTNGPSASIGEILEVPFEHPRDRAAMRNSKEYFELRNHALNFLDRYFAQDE
>NZ_CP040094.1|WP_174710038.1|3164849_3166292_-|ABC-transporter-substrate-binding-protein
MGDINWTRRDFIKGIGATTTGIALSSCGISGDRSAKGLTEEALAVQPVIRSQDLEKSDLTVGYVPVNDCAPFAIAWKKGFFRKYGLNVTLNREASWATSRDGLIFGRLDAAPVVSGAVTNARIGAEGARHAPLCAAMTIHRHGNAMTMNKAMWDFGLRPWYEYQEKYGDGALEAFGRDFRAYFDKQPPENRVWAVVLSSAIYEYFVRYLSAAAGVDPLKEFRVIIVPPPQMVTNVRIGAMQAYMVAEPWNTRAITGNENIGFTFAQGKEVWLGHPDRLLGVMESFIDKYPKTYRSLVKAMIEACQYCSKAENRQEVAELLTERSFTGAKPKKKDAPIAKFTSPGILGNYNYGGFDGKDRTIKAADTTIFFDIPDNLPKQPGEHSTFLWRSRSLWLMTQAARWGQIKKLPKNAEKIAEQGWRTDLYREIASEMGIKCPKDDYKVEPPEVFIDKKGFDPSDPVGYLNSFAIRANAPTNFFMS
>NZ_CP040094.1|WP_174710039.1|3166379_3167231_-|nitrate-ABC-transporter-permease
MIFQLNFAVIAAIATQAAWKKTKPVILRDVFILPVLGFLGIILLWWIIALANHELMPTPPEALIANLDYILNPFYQRGPGNLGIGWLLIASLRRVLLGFLLGAVVAIPLGFLIGMSRSAMLALNPIIQIFKPVSPLAWLPIALAIFNLADPSAIFVIFITSLWPTIINTALGVSSVPKDYLDVARVLEMPRWRRITKIIWPASLPYIFTGLRISLGIAWLVIVAVEMLTGGIGIGFFVWDEWSRLNLSSVFLAVFIIGLTGLILDYAVGKIEELVTHRPKTSN

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Crispr_ID: NZ_CP040094_16

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040094_16

3216081-3216209

Orphan

N:A

Consensus_repeat	Method
GAAGCAGAAGTCACCTTCGTACAGCCACGTGATATTTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040094_16

>merge|NZ_CP040094|16|3216081-3216209|CRISPRCasFinder
GAAGCAGAAGTCACCTTCGTACAGCCACGTGATATTTTCCACCAAGTTCCTGCAACCTCCCATGAGGATGCAGAGTTAGAGGCGGCGCTGGAAGCAGAAGTCACCTTCGTACAGCCGCGTGATATTTTC

>NZ_CP040094|16|15|3216081-3216209|CRISPRCasFinder
GAAGCAGAAGTCACCTTCGTACAGCCACGTGATATTTTC	CACCAAGTTCCTGCAACCTCCCATGAGGATGCAGAGTTAGAGGCGGCGCTG
GAAGCAGAAGTCACCTTCGTACAGCCGCGTGATATTTTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040094.1\|WP_174710067.1\|3205570_3207709_-\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|273991
NZ_CP040094.1\|WP_174710070.1\|3210384_3211224_+\|DUF4255-domain-containing-protein	unknown	unknown	gnl\|CDD\|379449
NZ_CP040094.1\|WP_174713639.1\|3213607_3214120_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|377718
NZ_CP040094.1\|WP_174713640.1\|3214639_3215023_+\|phage-tail-assembly-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174710071.1\|3211254_3212916_+\|phage-tail-sheath-family-protein	unknown	unknown	gnl\|CDD\|226028
NZ_CP040094.1\|WP_174713642.1\|3227033_3227708_+\|S-layer-homology-domain-containing-protein	unknown	unknown	gnl\|CDD\|306825
NZ_CP040094.1\|WP_174710081.1\|3227742_3228996_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174710069.1\|3208592_3209714_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP040094.1\|WP_174710080.1\|3225284_3226751_+\|N-6-DNA-methylase	unknown	unknown	gnl\|CDD\|223363
NZ_CP040094.1\|WP_174710072.1\|3214131_3214479_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174710079.1\|3224706_3225288_+\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|341145
NZ_CP040094.1\|WP_174710068.1\|3207820_3208501_-\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107
NZ_CP040094.1\|WP_174713641.1\|3223054_3223765_-\|ribose-5-phosphate-isomerase-RpiA	unknown	unknown	gnl\|CDD\|234816
NZ_CP040094.1\|WP_174710074.1\|3217315_3219496_+\|CHASE2-domain-containing-protein	unknown	unknown	gnl\|CDD\|226703
NZ_CP040094.1\|WP_174710075.1\|3220118_3220337_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_012407860.1\|3213063_3213519_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|377718
NZ_CP040094.1\|WP_174710078.1\|3224065_3224452_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174710077.1\|3221498_3222275_-\|MGMT-family-protein	unknown	unknown	gnl\|CDD\|119438
NZ_CP040094.1\|WP_174710076.1\|3220697_3221426_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174710066.1\|3204954_3205599_-\|FHA-domain-containing-protein	unknown	unknown	gnl\|CDD\|238017

Protein	Function_ID	Function_description	E-value
NZ_CP040094.1\|WP_174710067.1\|3205570_3207709_-\|substrate-binding-domain-containing-protein	gnl\|CDD\|273991	TIGR02136, ptsS_2, phosphate binding protein. Members of this family are phosphate-binding proteins. Most are found in phosphate ABC-transporter operons, but some are found in phosphate regulatory operons. This model separates members of the current family from the phosphate ABC transporter phosphate binding protein described by TIGRFAMs model TIGR00975. [Transport and binding proteins, Anions].	2.12952e-09
NZ_CP040094.1\|WP_174710070.1\|3210384_3211224_+\|DUF4255-domain-containing-protein	gnl\|CDD\|379449	pfam14065, DUF4255, Protein of unknown function (DUF4255). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 190 and 320 amino acids in length.	2.23022e-16
NZ_CP040094.1\|WP_174713639.1\|3213607_3214120_+\|phage-tail-protein	gnl\|CDD\|377718	pfam06841, Phage_T4_gp19, T4-like virus tail tube protein gp19. This family consists of several tail tube protein gp19 sequences from the T4-like viruses. This family also contains bacterial members which suggest lateral transfer of genes.	4.31007e-33
NZ_CP040094.1\|WP_174710079.1\|3224706_3225288_+\|restriction-endonuclease-subunit-S	gnl\|CDD\|341145	cd17256, RMtype1_S_EcoJA65PI-TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to S.EcoJA65PI TRD1-CR1, S.Fco49512ORF2615P TRD1-CR1, and S.SonIV TRD2-CR2. Escherichia coli UCD_JA65_pb S subunit (S.EcoJA65PI) recognizes 5'... AGCANNNNNNTGA ... 3' while Shewanella oneidensis MR-1 S subunit (S.SonIV) recognizes 5'... TACNNNNNNGTNGT ... 3'. The recognition sequence of Flavobacterium columnare S subunit (S.Fco49512ORF2615P) is undetermined. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. For example, S.EcoJA65PI TRD1 recognizes AGCA/TGCT and S.EcoJA65PI TRD2 recognizes TCA/TGA; S.SonIV TRD1 recognizes TAC/GTA and S.SonIV TRD2 recognizes ACNAC/GTNGT. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It may also include TRD-CR-like sequence-recognition domains of various type II restriction enzymes and methyltransferases and type I DNA methyltransferases.	3.12033e-19
NZ_CP040094.1\|WP_174710071.1\|3211254_3212916_+\|phage-tail-sheath-family-protein	gnl\|CDD\|226028	COG3497, COG3497, Phage tail sheath protein FI [General function prediction only].	7.95046e-50
NZ_CP040094.1\|WP_174713642.1\|3227033_3227708_+\|S-layer-homology-domain-containing-protein	gnl\|CDD\|306825	pfam00395, SLH, S-layer homology domain.	7.94268e-06
NZ_CP040094.1\|WP_174713641.1\|3223054_3223765_-\|ribose-5-phosphate-isomerase-RpiA	gnl\|CDD\|234816	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA.	3.88916e-118
NZ_CP040094.1\|WP_174710080.1\|3225284_3226751_+\|N-6-DNA-methylase	gnl\|CDD\|223363	COG0286, HsdM, Type I restriction-modification system methyltransferase subunit [Defense mechanisms].	2.60141e-114
NZ_CP040094.1\|WP_174710068.1\|3207820_3208501_-\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	3.82958e-61
NZ_CP040094.1\|WP_174710074.1\|3217315_3219496_+\|CHASE2-domain-containing-protein	gnl\|CDD\|226703	COG4252, COG4252, Predicted transmembrane sensor domain [Signal transduction mechanisms].	6.55119e-117
NZ_CP040094.1\|WP_174710069.1\|3208592_3209714_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.25454e-33
NZ_CP040094.1\|WP_012407860.1\|3213063_3213519_+\|phage-tail-protein	gnl\|CDD\|377718	pfam06841, Phage_T4_gp19, T4-like virus tail tube protein gp19. This family consists of several tail tube protein gp19 sequences from the T4-like viruses. This family also contains bacterial members which suggest lateral transfer of genes.	2.21581e-43
NZ_CP040094.1\|WP_174710077.1\|3221498_3222275_-\|MGMT-family-protein	gnl\|CDD\|119438	cd06445, ATase, The DNA repair protein O6-alkylguanine-DNA alkyltransferase (ATase; also known as AGT, AGAT and MGMT) reverses O6-alkylation DNA damage by transferring O6-alkyl adducts to an active site cysteine irreversibly, without inducing DNA strand breaks. ATases are specific for repair of guanines with O6-alkyl adducts, however human ATase is not limited to O6-methylguanine, repairing many other adducts at the O6-position of guanine as well. ATase is widely distributed among species. Most ATases have N- and C-terminal domains. The C-terminal domain contains the conserved active-site cysteine motif (PCHR), the O6-alkylguanine binding channel, and the helix-turn-helix (HTH) DNA-binding motif. The active site is located near the recognition helix of the HTH motif. While the C-terminal domain of ATase contains residues that are necessary for DNA binding and alkyl transfer, the function of the N-terminal domain is still unknown. Removal of the N-terminal domain abolishes the activity of the C-terminal domain, suggesting an important structural role for the N-terminal domain in orienting the C-terminal domain for proper catalysis. Some ATase C-terminal domain homologs are either single-domain proteins that lack an N-terminal domain, or have a tryptophan substituted in place of the acceptor cysteine (i.e. the motif PCHR is replaced by PWHR). ATase null mutant mice are viable, fertile, and have a normal lifespan.	6.7422e-13
NZ_CP040094.1\|WP_174710066.1\|3204954_3205599_-\|FHA-domain-containing-protein	gnl\|CDD\|238017	cd00060, FHA, Forkhead associated domain (FHA); found in eukaryotic and prokaryotic proteins. Putative nuclear signalling domain. FHA domains may bind phosphothreonine, phosphoserine and sometimes phosphotyrosine. In eukaryotes, many FHA domain-containing proteins localize to the nucleus, where they participate in establishing or maintaining cell cycle checkpoints, DNA repair, or transcriptional regulation. Members of the FHA family include: Dun1, Rad53, Cds1, Mek1, KAPP(kinase-associated protein phosphatase),and Ki-67 (a human nuclear protein related to cell proliferation).	5.86508e-17

>NZ_CP040094.1|WP_174713640.1|3214639_3215023_+|phage-tail-assembly-protein
MPRKKDTLSTEFAFTLPRGLSDSEHRIHRHGVMRLATAKDEILVQQERRVQENPAYGVLVMLARVITRLGSLNSVSPDLLEELLLHDIAYLREFYNRINQQGDVHIPTQCPRCNTQFSVELELAGES
>NZ_CP040094.1|WP_174710072.1|3214131_3214479_+|hypothetical-protein
MFPTEFEFTLPKGYLDSEGNLHRKGVMRLSTAIDEIAPLRDPRVKANPVYATIIILSRVITHLGALSEVTPAIVENFFAQDLNYLQDFYRRINGLEGETSIPEDTINAPEALLHN
>NZ_CP040094.1|WP_174713639.1|3213607_3214120_+|phage-tail-protein
MTNYLTVVQSASRIPEVLTAHRFYLELTLEGQNDANCFFLECQGFKRTQEVIEISEVTSQTWGKKGQSKGQVVRTKLPSNPKSGNLTLRRGTTNSMDFWKWFEKVEKGNWSEQRRLVALSIYNQANQEIARFELAGAWPASYKIADVNARSHDIEIEEVEVAFEEFKRVK
>NZ_CP040094.1|WP_012407860.1|3213063_3213519_+|phage-tail-protein
MAGEFLTSCKFYFEADGITDKFIKEISGLGVENTPAQEVHGSSKGAKLMRQATPTVVKFTNITVKVIATDDIDLYKWYQDCNEDMGDPRKWSQKRKTGSVVAYDQQGSEKARWNIVNCYPCKYTGPTLTASGGDMANETVELVHEGIKRIK
>NZ_CP040094.1|WP_174710071.1|3211254_3212916_+|phage-tail-sheath-family-protein
MARLDYFAPGVYIEEIDRGSRPIEGVSTAVAGFVGFTEDVRGGAELYKPMLVTTWTQYLNYFARPNSDGFTDFNAYLPFSVYGYFMNGGGRCWVTSIGTQLPGAPRPATPEPATLRINSRGNRPALRFTLRPEQASGGLVNLVIIDGSPRALPEGTEGEAPPNTGEYFTIQIRRGDELLEQYENLSMNREPNAQVATYALAALRNSMYVTVEDITQSGQPLARRPVNGQYELAPPIVAAPPDRFSQNLEGVRDDRTGVRGIFEVDEITMLACPDVMRAYQEQVLNLDQVHGIIELMISMCEGSASGDIPNPPNRMVVLDAPPDAVKPQQVVEWLNRFNRRSMFAALYYPWIKVPNPRDRGNPILVPPCGHVMGVWARTDETRGVYKAPANEVPRGVIGLGYETNFREQELLNPLGINCIRSFPNRGIRIWGARTLVEPDKTEWRYISVRRLISYIEKSLELGTQWVVFEPNDQDLWARVTRTVSNFLERIWREGALFGASPAQAFYVKCDEELNPPETRILGRLYIEVGVCPVRPAEFVVFRISQWNGIEDSE
>NZ_CP040094.1|WP_174710070.1|3210384_3211224_+|DUF4255-domain-containing-protein
MLIFVLQTLADILAGGTSLTSTEQIDFSHPGNRREEGAGPTLNLYIFDIRESKQVQHSGRQVERKLTRALQPATVNWAPAWFDVSLLLTAWDRTALGEHHFISEALAVLLRHRTLEEEFLVPELRGYGNLNMTVALEPPIEIGSLWSALNVPLRSALYLTVTIPFEPQPTPVPLVWERIFNLRNQLSRDSDSLVLTRRVAIAGIVKSAVTNLPLVATEVAVRGTEKSILTTKEGLFFFEDLHLGNYVLTLNHPGYLPQNVNALVDNQSNTFKEIFLTPE
>NZ_CP040094.1|WP_174710069.1|3208592_3209714_-|HAMP-domain-containing-histidine-kinase
MTLGFSVQKLENGSNYLNSSDVQSFCQLESQQLTSQYPIFFARIVYYDCLLKNHQEVINYGQDQAPFSPKTLAYLRSEAWLTDFPPALTLHEFKLKDFSSISYICPIAYRNQKPEYIQIITHKPLSESLQLYVKRSAILLSKYVDIYLDYGRQKTEIQLLEDILHRIGHQLRNSLGLIGLYAHNLCLGLEDSLWQGQATIVRESIQDLDTNLNELIDCGQGAKLRVKPQDLRSLFVESITNLQPLINQKKVEILIPDTSTILNMDKLQMKQVFDNILSNAVHFSPNSGTITCSWQIFQDEVLMKVSDQGSGLSQEDLQKVFTPFYSRRKGGTGLGLTIAKKIVLDHQGSIWAQALSERGAQFSVILPRTRRGN
>NZ_CP040094.1|WP_174710068.1|3207820_3208501_-|response-regulator-transcription-factor
MANDNKKLSVLLVDDEERFRQGLRTLLSFYSINSALPIEVMGDADSVEQVLKFTAQKCPDLILLDMQLKGCDGITVLARLRETAYTGKVLVLSAHQEDDWIFRAMQAGAAGYVFKNRVATQLCEAIETVTRSEIYLPSEVASRFFRFFQAYSDSCLKACHEVHLTEREQEVLYWLTQGASNEEIAKHLYVTVATVKAHLTSIFEKLKVTSRTQAIVAALKLGLVHA
>NZ_CP040094.1|WP_174710067.1|3205570_3207709_-|substrate-binding-domain-containing-protein
MPSFESFYQQYPCSYNSPLSCDRPFQTAQQIKGAKFCLECGFPATLPQEAEIKGSQGTYKIASFIGVRGLGRLYSGVQLKDKQPVIIKEYLLPNRCFNESETLKRKETFKRVGGVSLADSRIQNFRLVETKEAIADEKGERCYLITQGIESSQTLGKYLIEKGAMTSPDVREVLNQGLQTLQFLHTQKLRFPSNQVQLGITHGNISLDSTLIKIENNQKFSIYFCDLATWENLFIPPIIPQPAPTRPEQDLESLGLLAFYLWAGRTTNFLSNQPLDPRDNQQWPDTDSHLKQFIYRLIGLETPFENAETARQALLQLPKEDSGKNSVRSPDSQVIEKRLPMPLILIGILALLLLGGGILYWLLGKKTDNPNQYILWSKLVRNFSEVPNVPAGQFTYTGEKDSTWSYVLTQPVDNSRLGDLLTRPKPDATATFNYEPVLSSNLNNPIKSIEEVQTNKKDFAITSLVENITDKLSKKQVAYDGLLVFVAFNKRDSNLANALGGQISLEQLRQIYTGKITNWQQISPKLPNLAVKPFAPTEPEAISKFQEIVLKNVPQDEALFAANVTKLDTTKTQNQIRSETLEGRTTGIISFGIISKTSSQCTGYPLAIADGKKSAIQPLFQRRDRRSINPSDDLCQHDDYYVDVTTFQSYPLGYPLFVVYPKDTSRLPGGSTFAQMLTTRQGQCLLSKVGLVALQPMPDDINSYACKSVPQS
>NZ_CP040094.1|WP_174710066.1|3204954_3205599_-|FHA-domain-containing-protein
MPANRCPNPSCEYFNRALPNNAKVCPWCSTPVGNVVSSTPQQPPSQPPPVQQQPSQPPAQYQRPPTEQPNYQPPQQPPVDYSTVYQPRVSYQPTPPAYVPPPQRAPALKLIHTTGREFHLVGEGGYIGRRSQSPGIAPPEIDLTGIPSEGIVSRRHARVDWDWSQNAYMIVDMSTNGIYLNNNPLTPGMQYRLLNGDVLRFGQDNLVNFTIYVV
>NZ_CP040094.1|WP_174710074.1|3217315_3219496_+|CHASE2-domain-containing-protein
MLTNLKSLFRQPVILSSAIATILLVGIQKLGVFEPLEMKVYDQMMQLRADPGPDSRLLIVALTEKDIQKWNWPLSGELLDRLLGKLEGYEPRAIGLDIFRDLPVQPGHEKLLQRLQQSDIIIPICKHSGSNNPGIAAPKGVEAERVGFNDVVEDTDATIRRNLLLVSAEESDSCQSTYSFSLQLALKYLEVGGIQLKFTPKKELQLRDTVFKPLQSNAGGYQKADTNGYQILLNYHSGHQIAQQVTITEILENQVKPDLVKDRIVLIGSTANSLNDIFNTPFATGKSDNSGKMAGIEIHAHSVSQILSAVLNKQPLFWFLPEWGKVLWIWGWTVIGGLLVSRIQHPLGLGLAGATALAVLFGGNFVIFTQAGWFPVIPPALGLVFTAGSVLAYSAYKTKQEQKEITQRVQEHQQLIVELQGLLRQRGDASNEAPTVIADSIGQEISLGTLLNNRYKITQGLGSGGFSNTYLADDIQRPGNPQCVVKQLRPPRQDAEYLNVVRRLFDAEAQILETLGKHPQIPQLLAFFEENRQFSLVQEFVRGHAMDKEVTSGKRLKQAEVVEMLKEVLHVLVFVHSYGVIHRDIKPSNLIRRESDQHIILIDFGAVKQIHPQQQEAQTISIGTPGYAPSEQMSGLPKLNSDIYALGIMGIQGLTGVDPREFHRDINTGEIIIEGEADANQQTWQHWRELTDATNELVIILNKMAHFDFIQRYQSAAEVLKALESL
>NZ_CP040094.1|WP_174710075.1|3220118_3220337_+|hypothetical-protein
MKLSILIDSVLIVTSIALLPGMGGTQIVTHNSGKPIAVNSNNLPNHSTNVSYPIHFDVAFLAHQGGKASVSP
>NZ_CP040094.1|WP_174710076.1|3220697_3221426_+|hypothetical-protein
MLKLSPESPLFFVLIIISFLIVTLSTWLSSKPFILKPFGLNDIIQILTLQLFISLLLERSLEVFITTWRGPFVEQLDISIQQEKALISEKLRLIEVQQKQFPSFESNQTIGLPPEGMSLEQQIIQNFTQNQQESLKIFKPQMDNLNEKERQKTAYKSDTRVIALWTSLLFGLLMSAIGIRSIEPLVVLDFDNPIQVIIFRCLDALLTGGLIAGGSEGIHKLIKVFIDFMEATSKQIKNQGLS
>NZ_CP040094.1|WP_174710077.1|3221498_3222275_-|MGMT-family-protein
MALSITHLSTKVKPGSAMVELKTLNLKLGHGIEEDINADPISPRQVLIVRYEDILDLSIQPGELRENIVVTGIGFDKFIPGSLLTFESGAAIRLTFYCEPCKRIAHLVESFKSIKGKRGILGVVTQSGQIQIGSKFQVQAHKFPALSENPYERFLNFIINIPSGKVVTYKQIIKAIGVDNSYLRAIPTYLKKTSVTDYPVHRILDSKGSLINYVNQQKNKLETEGVKVLVEANIVNKLNKTFVDINNYSWEDCNIYLS
>NZ_CP040094.1|WP_174713641.1|3223054_3223765_-|ribose-5-phosphate-isomerase-RpiA
MTAAADPVKLMKQEVGKAAAALVKSGSIVGLGTGSTTAYTIQFLGDRLKSGELKDIIGIPTSFQSEVLAKQYGVPLATLDSIDHIDIAIDGADEVDPQKNLIKGGGAAHTREKVVDYLAEQFIVVVDSGKLVDRLGSSFAVPVEVIPMAITPVTNAIKKLGGKPELRMGVKKAGPVITDQGNFVLDVRFDSIEDPVSLEKTLNNIPGVLENGIFVNCVDLVLIGEVKDGQPLVRQL
>NZ_CP040094.1|WP_174710078.1|3224065_3224452_-|hypothetical-protein
MISPPNNPNSDESQSDPLTFLSMVINREDGREILNKSVEFLARISYIQQDQAEAVRQKRAEAEAQQKIETEAKACKILMAITIEHAKSQGLDPYKDLDKLQSKSYNQLCAYVHRRFPELSNRIPLYPA
>NZ_CP040094.1|WP_174710079.1|3224706_3225288_+|restriction-endonuclease-subunit-S
MSHSVLPLQKIGEIFQGITLSRYADDNGRPERVVSLSDLEYLYIERNPNVVHLRLSDLERYRIKTGDVVISNRGTLLKASVVTDKLEGSLASNNVAVIRPIVEIDPVYLAVLMRSKWLEQQLATLYLQSSTIQLIPISQLRSLKIPLPNLETQNKLAQLFLATERANRITLEILDTRNNLSEFTLFQTLEGQQ
>NZ_CP040094.1|WP_174710080.1|3225284_3226751_+|N-6-DNA-methylase
MITLEYLEDRLWTAASILWGVFSSDDYINYLFRLLFLKRLSDLFEEESHKAKPRFFIPAISQWNYLQQIPENIGQALNEAGRAIENYNPGIRELQRIFINYNFEHSHSQVDIKKQDQVLRQLIWHLSEIKLQNKYFGEPDLLGKACEYLISQFAANLGKKSGEFFTPQKVAELLVSLLEPQPGMSICDPFCGFGGILTECIKQIKHLENKPNDLLLYGQDINQNTFSLAKINLLLHDIFDFDIRLGDTIREPQLVENGNLMLFDRVISNPPFSIRNWGDELAKFDVYGRFRYGIPPKGSGDFAFIQHILATLKNTGKAGVIVPLGVLFRGGAESEIRRRIIESDLIEAVIGLAANLFYGTGIPTAILIFNQDKEEVRRNKILFINASNEYQKSRNQNYLREEDITHIITAYQAFQDEEGYAKVVAVEELAANEYILNINRYVLTPKDEKDKIDIKAEILKLRELESQRAEAEKDINKYLRQLGIKLSD
>NZ_CP040094.1|WP_174713642.1|3227033_3227708_+|S-layer-homology-domain-containing-protein
MRQLSVTLSLMALLQNLPAIAQVPESNSGIPADSIQQVTAVKWMTNFPDGKFYPERLLSRAELASIMVKAFRLDKREAVTKANLTIPDVPRSYWAFNDIQTVLKTDIMKGYRGNEFFPNQKVTKAEALAIFAQAYGVFQFPDEAVNEILASHPDEKSIPTWARKAIATVATEGFLNTDAQGNISPLKPVTRGDMAYVLSKYLQRQQRQPETPEVPIIQNSPQSP
>NZ_CP040094.1|WP_174710081.1|3227742_3228996_-|hypothetical-protein
MPHRHYPPAYLRYLRARLWNLGRPGFWVTAIFLSVVGLVTWEYWSNPDIFVYKQKNKVTSQTPTDSSLSAENRAIAADIDNLPVLFNDFEQATLSSTANTPKEKTEAKKSNSLLEDAINKQKSASDAKLNPTLSVNGDTPPAVKNPFVVQTENLLRTGTVDNNNQFLGIKTLTGASEPTDGEQTSSSLGIGFTNQTNKNQNSASVSPLQAILNQSTNQKLSGFNGTTATQTNALGRASEPGTTLMPPMNSLSSQNSLPSTGLTTGTGYTSTGRNLQQNPYNNLNNGQVVPNNGLTTSTGYTNLQQNPYSNLNNGQVVPNVAPGTSPATSGIPTNIAPYSSQIPSQSVVTPTNPMGYANYGLQQSAQPPQSNYGNYGLQQPTQPLQSNYGNYMQQQPTQSNSLYLRQLRDKYRSPGQN

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Crispr_ID: NZ_CP040094_17

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040094_17

3306110-3306209

Orphan

N:A

Consensus_repeat	Method
ATGTCTACGACGGGCTACGCCTACGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040094_17

>merge|NZ_CP040094|17|3306110-3306209|CRISPRCasFinder
ATGTCTACGACGGGCTACGCCTACGCTATTTTATTTTGTGTCTAATTTTCGGGTTGTGCTTGTAAAGAATTGGAATGTCTACGACGGGCTGCGCCTACGC

>NZ_CP040094|17|16|3306110-3306209|CRISPRCasFinder
ATGTCTACGACGGGCTACGCCTACGC	TATTTTATTTTGTGTCTAATTTTCGGGTTGTGCTTGTAAAGAATTGGA
ATGTCTACGACGGGCTGCGCCTACGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040094.1\|WP_174710135.1\|3309648_3310779_-\|quinone-dependent-dihydroorotate-dehydrogenase	unknown	unknown	gnl\|CDD\|235388
NZ_CP040094.1\|WP_174710140.1\|3317371_3318601_-\|two-component-system-response-regulator	unknown	unknown	gnl\|CDD\|225971
NZ_CP040094.1\|WP_174710124.1\|3290000_3292451_+\|HEAT-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|224331
NZ_CP040094.1\|WP_174710133.1\|3306415_3308017_-\|TROVE-domain-containing-protein	unknown	unknown	gnl\|CDD\|368584
NZ_CP040094.1\|WP_174710125.1\|3292576_3293494_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|185268
NZ_CP040094.1\|WP_174710134.1\|3308865_3309600_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174710128.1\|3295287_3296892_-\|2-isopropylmalate-synthase	unknown	unknown	gnl\|CDD\|234864
NZ_CP040094.1\|WP_174710129.1\|3298249_3300610_+\|CHASE2-domain-containing-protein	unknown	unknown	gnl\|CDD\|226703
NZ_CP040094.1\|WP_174710136.1\|3311016_3313938_+\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|376570
NZ_CP040094.1\|WP_174710137.1\|3314339_3315293_+\|isoaspartyl-peptidase/L-asparaginase	unknown	unknown	gnl\|CDD\|271340
NZ_CP040094.1\|WP_174710141.1\|3319305_3320229_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226606
NZ_CP040094.1\|WP_041565194.1\|3296987_3297509_-\|NYN-domain-containing-protein	unknown	unknown	gnl\|CDD\|350235
NZ_CP040094.1\|WP_174710126.1\|3293847_3294525_-\|SnoaL-like-polyketide-cyclase	unknown	unknown	unknown
NZ_CP040094.1\|WP_174710132.1\|3305228_3306080_+\|peptidoglycan-binding-protein	unknown	unknown	gnl\|CDD\|225943
NZ_CP040094.1\|WP_174710130.1\|3300960_3302322_-\|glutathione-disulfide-reductase	unknown	unknown	gnl\|CDD\|235701
NZ_CP040094.1\|WP_174710131.1\|3302658_3304983_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|366375
NZ_CP040094.1\|WP_012407669.1\|3314145_3314340_+\|DUF2256-domain-containing-protein	unknown	unknown	gnl\|CDD\|378353
NZ_CP040094.1\|WP_174710139.1\|3315838_3317218_-\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	unknown	unknown	gnl\|CDD\|184646
NZ_CP040094.1\|WP_174710127.1\|3294706_3295186_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP040094.1\|WP_174710138.1\|3315283_3315727_-\|DUF29-family-protein	unknown	unknown	gnl\|CDD\|366774

Protein	Function_ID	Function_description	E-value
NZ_CP040094.1\|WP_174710140.1\|3317371_3318601_-\|two-component-system-response-regulator	gnl\|CDD\|225971	COG3437, COG3437, Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms].	8.06988e-130
NZ_CP040094.1\|WP_174710124.1\|3290000_3292451_+\|HEAT-repeat-domain-containing-protein	gnl\|CDD\|224331	COG1413, COG1413, FOG: HEAT repeat [Energy production and conversion].	7.25431e-19
NZ_CP040094.1\|WP_174710133.1\|3306415_3308017_-\|TROVE-domain-containing-protein	gnl\|CDD\|368584	pfam05731, TROVE, TROVE domain. This presumed domain is found in TEP1 and Ro60 proteins, that are RNA-binding components of Telomerase, Ro and Vault RNPs. This domain has been named TROVE, (after Telomerase, Ro and Vault). This domain is probably RNA-binding.	1.82023e-37
NZ_CP040094.1\|WP_174710125.1\|3292576_3293494_-\|hypothetical-protein	gnl\|CDD\|185268	PRK15370, PRK15370, type III secretion system effector E3 ubiquitin transferase SlrP.	0.000597652
NZ_CP040094.1\|WP_174710128.1\|3295287_3296892_-\|2-isopropylmalate-synthase	gnl\|CDD\|234864	PRK00915, PRK00915, 2-isopropylmalate synthase; Validated.	0
NZ_CP040094.1\|WP_174710135.1\|3309648_3310779_-\|quinone-dependent-dihydroorotate-dehydrogenase	gnl\|CDD\|235388	PRK05286, PRK05286, quinone-dependent dihydroorotate dehydrogenase.	0
NZ_CP040094.1\|WP_174710129.1\|3298249_3300610_+\|CHASE2-domain-containing-protein	gnl\|CDD\|226703	COG4252, COG4252, Predicted transmembrane sensor domain [Signal transduction mechanisms].	2.66503e-56
NZ_CP040094.1\|WP_174710136.1\|3311016_3313938_+\|GAF-domain-containing-protein	gnl\|CDD\|376570	pfam01590, GAF, GAF domain. This domain is present in cGMP-specific phosphodiesterases, adenylyl and guanylyl cyclases, phytochromes, FhlA and NifA. Adenylyl and guanylyl cyclases catalyze ATP and GTP to the second messengers cAMP and cGMP, respectively, these products up-regulating catalytic activity by binding to the regulatory GAF domain(s). The opposite hydrolysis reaction is catalyzed by phosphodiesterase. cGMP-dependent 3',5'-cyclic phosphodiesterase catalyzes the conversion of guanosine 3',5'-cyclic phosphate to guanosine 5'-phosphate. Here too, cGMP regulates catalytic activity by GAF-domain binding. Phytochromes are regulatory photoreceptors in plants and bacteria which exist in two thermally-stable states that are reversibly inter-convertible by light: the Pr state absorbs maximally in the red region of the spectrum, while the Pfr state absorbs maximally in the far-red region. This domain is also found in FhlA (formate hydrogen lyase transcriptional activator) and NifA, a transcriptional activator which is required for activation of most Nif operons which are directly involved in nitrogen fixation. NifA interacts with sigma-54.	1.34237e-07
NZ_CP040094.1\|WP_174710137.1\|3314339_3315293_+\|isoaspartyl-peptidase/L-asparaginase	gnl\|CDD\|271340	cd14949, Asparaginase_2_like_3, Uncharacterized bacterial subfamily of the L-Asparaginase type 2-like enzymes, an Ntn-hydrolase family. The wider family of Asparaginase 2-like enzymes includes Glycosylasparaginase, Taspase 1, and L-Asparaginase type 2. Glycosylasparaginase catalyzes the hydrolysis of the glycosylamide bond of asparagine-linked glycoprotein. Taspase1 catalyzes the cleavage of the Mix Lineage Leukemia (MLL) nuclear protein and transcription factor TFIIA. L-Asparaginase type 2 hydrolyzes L-asparagine to L-aspartate and ammonia. The proenzymes of this family undergo autoproteolytic cleavage before a threonine to generate alpha and beta subunits. The threonine becomes the N-terminal residue of the beta subunit and is the catalytic residue.	6.26648e-166
NZ_CP040094.1\|WP_174710141.1\|3319305_3320229_-\|hypothetical-protein	gnl\|CDD\|226606	COG4121, COG4121, Uncharacterized conserved protein [Function unknown].	4.42488e-48
NZ_CP040094.1\|WP_041565194.1\|3296987_3297509_-\|NYN-domain-containing-protein	gnl\|CDD\|350235	cd10911, PIN_LabA, PIN domain of Synechococcus elongatus LabA (low-amplitude and bright) and related proteins. This subfamily contains Synechococcus elongatus PCC 7942 LabA which participates in cyanobacterial circadian timing, it is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system, and appears to be necessary for KaiC-dependent repression of gene expression. This subfamily belongs to the LabA-like domain family which includes the N-terminal domain of limkain b1, a human autoantigen localized to a subset of ABCD3 and PXF marked peroxisomes. Also included in the LabA-like domain family are human ZNF451, uncharacterized Bacillus subtilis YqxD, uncharacterized Escherichia coli YaiI, and the N-terminal domain of a well-conserved group of mainly bacterial proteins with no defined function, which contain a C-terminal LabA_like_C domain. Curiously Pseudomonas putida S16 NicB , which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls into the LabA-like family. The PIN (PilT N terminus) domain belongs to a large nuclease superfamily. The structural properties of the PIN domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions; in some members, additional metal coordinating residues can be found while some others lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	3.78528e-60
NZ_CP040094.1\|WP_174710132.1\|3305228_3306080_+\|peptidoglycan-binding-protein	gnl\|CDD\|225943	COG3409, COG3409, Putative peptidoglycan-binding domain-containing protein [Cell envelope biogenesis, outer membrane].	1.58212e-23
NZ_CP040094.1\|WP_174710130.1\|3300960_3302322_-\|glutathione-disulfide-reductase	gnl\|CDD\|235701	PRK06116, PRK06116, glutathione reductase; Validated.	0
NZ_CP040094.1\|WP_174710131.1\|3302658_3304983_-\|AAA-family-ATPase	gnl\|CDD\|366375	pfam00931, NB-ARC, NB-ARC domain.	9.41983e-08
NZ_CP040094.1\|WP_012407669.1\|3314145_3314340_+\|DUF2256-domain-containing-protein	gnl\|CDD\|378353	pfam10013, DUF2256, Uncharacterized protein conserved in bacteria (DUF2256). Members of this family of hypothetical bacterial proteins have no known function.	1.60455e-20
NZ_CP040094.1\|WP_174710139.1\|3315838_3317218_-\|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU	gnl\|CDD\|184646	PRK14360, glmU, bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU.	0
NZ_CP040094.1\|WP_174710127.1\|3294706_3295186_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	8.55671e-15
NZ_CP040094.1\|WP_174710138.1\|3315283_3315727_-\|DUF29-family-protein	gnl\|CDD\|366774	pfam01724, DUF29, Domain of unknown function DUF29. This family consists of various hypothetical proteins from cyanobacteria, none of which are functionally described. The aligned region is approximately 120-140 amino acids long corresponding to almost the entire length of the proteins in the family. Structure 3fcn is a small protein that has a novel all-alpha fold. The N-terminal helical hairpin is likely to function as a dimerization module. This protein is a member of PFam family PF01724. The function of this protein is unknown. One protein sequence contains a fusion of this protein and a DnaB domain, suggesting a possible role in DNA helicase activity (hypothetical). Dali hits have low Z and high rmsd, suggesting probably only topological similarities (not functional relevance) (details derived from TOPSAN). The family has several highly conserved sequence motifs, including YD/ExD, DxxNVxEEIE, and CPY/F/W, as well as conserved tryptophans.	1.0155e-05

>NZ_CP040094.1|WP_174710132.1|3305228_3306080_+|peptidoglycan-binding-protein
MTNKTLNFLNLLFGLKQSRRYFPEEKQVCVFNKRPILYRGFSPNSAQESINELQERLQAQGFLSNISGKFDLETEEAVIKFQKANNLQVDGIVGPLSWSCLFYPKLYRNQKSMSPKLQDAVKELQIILNEEGFFKKEPDGYFSRETERGVKRFQRIYGLKDDGIVGAATWAVLLGMRQKIDNNSFLRLVYFLPPQSWFLWEQFLMIFFIMLGIYSSPIGRDAPKWHIALATAYALTCIVPFLLECLPLKPSKQTSLPLLQYAPYVLTGIFWKPIINFMGGLFN
>NZ_CP040094.1|WP_174710131.1|3302658_3304983_-|AAA-family-ATPase
MPGQSEDWNLPKSWNRKILQDWEIDRLLTNLEVTLQKRYRQSTRKDLLLGLLCGYSLKKIGQDLHKENAAVRAGLSNIYRDIEVLTGEANKSVKSSNLVYVLEKHGYRKGSVVAAIQRRDIPHNLPAPTYTQFIGREADMKKLLERLSSVHGAHMITVHGIGGVGKTALVLAAAYLCLKASNENSSNAPNFDAIIFTSAKQQELIPTNSILWRQQGQRNLRDIFREIANALDDPTILQSPPNDQFDRVRQILSKRRTLLIVDNMETIEDRNEVIEFLYNLPICIKVIITSREQIALLPIRLRNLPPDDGLQLIRQQAEEKGISINDEDSKQLYDRTGGIPLAIVYSIGQLSGGYSLNSVLNRLTSATGDVARFCFEQSVQGIKGQPPHKLLMSLAIFPDSAILAAVAEVAGLTAAPDAVNNGLARLQQLSLVNLNPETKRFDMLSLTREYALAELAAYPDFEREARRRWVRWYLDFAHNYAGEDWEKWIHYNKLEPEEGNLRAVLHWCEDKEHYEAVRDLWLLLSHYANLYAYWDDRLDWLQWLIEQSERRGEWSCFVKIIVRKSWLLIRECSSVSLKEADKILRRTWILRDHADLCVQADLAESMARLQIRQKDYQDARHWLTVEEKLVIEANLEERQHIRYFIPVLYHQAEIYYLEGEYLLAKKLFQEVMKSAEKISWHRVINSAQNWLADIAIEQGDRDRAEKLLIQGFTVAEMTHNKRRLARYQRSLARWEKKWGSAEKAYQMSIKAIDGFKFLGMTRDAQEMQIFLDSL
>NZ_CP040094.1|WP_174710130.1|3300960_3302322_-|glutathione-disulfide-reductase
MAFDYNLFVIGAGPGGLAAAKKAASYGVRVAIAEQESIGGTCVNRGCIPKKLIVYAADFALQKQIAPSYGWSECQTYFDWTLFIKSVNQHLDTINQSYFQQLHKAGIELICDRATFIDAHTVDINGLKVTADKILIAVGGQPLKPKIPGIEYAITSREMFQLPYLPKRLAIIGGGYIGVEFSSMMHAFGCQVTVIEKDEMILSGFDDDIRSAVQQGLSKRGIKLLTSSTVQEIKYSDESLLLTISGKKREIITADTILVATGYAPNTKNLGLENAHVELGEHGAIKVDEYSRTTQENIFAVGDCTSRVQLSPVAKAEGIAFANTVFGNKVQKLDYDYVPSAVFCRPEAAGVGMTEAKAREKFGESVQCYCTQFQPLLYQLTEQNEPTTMKLVVNGDSGQVLGAHLVGEHAADIIQSLGVAIRKGITKEDLDETIGIHPTVGEEFFSLLNQMQE
>NZ_CP040094.1|WP_174710129.1|3298249_3300610_+|CHASE2-domain-containing-protein
MAEEPTSTLTKNYVSAANRHSSKPTKVTSTASARQSRWMIHLGHLLAGACVMGAAVLSASGGESVQLIENKALSGFFQLRGPIVPPEDIVILAIDDQSISVPEQYYKTNPKQYAYLETLKSYPYKRAAYSQIITKLIKAGVRSVAIDVVFDTPSSYGVTDDRQFQAVLQKYGSKVTLAAVYENSQTHQGTFTQLTDPQQMFRTGSVSIGSVNFPVEVDGKVHRLASEFSKSLVEDTLMEKLPSFDEAALRTAQVNYPRPKGDRIYFWGSAGTFEQIPFWHVLDPENWNTYLQQGKVFKDKIVLIGATDKLNNDYYPVAASNSAKPMSGVEIHANAIATLMSGKAIAPGINTPPLQGLFVLALVGSTALMISRRKRSINRFLYSLALSGAWLGISYGLFVYGGLIFPTIVPMIAIAMTGLSYLGTSVMRESIRKRQLVNIFQKYKTSPVVQEIISQQHDLQYLIQQRDLALSGKVLARRYKIVKVLGSGGFSETYIAEDTQRPGNPLCVVKQLKPASTKPEALQLARRLFHSEAQTLEKLGTHDQIPQLLAYFEEDEEFYLVQEQIIGHTLNQELPPGRAIDEIAAIKIVRDLLQTLIFVHKNNVIHRDIKPSNIIRRHSDGKLVLIDFGAVKEVSTKQLDTQEQTPFTIGIGTQGYAPSEQCFGRPQYSSDIYAVGMVGIRALTGVAPRELDRDADGEIKWSDAYGGKLRSQVSRSLANILSKMVLDDFKHRYQSASEALEDLKAFDDVVDSHSRYPILEDDSLTNTLDQLNAPTKSCSEASSETS
>NZ_CP040094.1|WP_041565194.1|3296987_3297509_-|NYN-domain-containing-protein
MGSPMNRLSIFVDGNNMFYAQQKNGWFFDPRRVLEYFKHEQSETTLINAFWYTGLKDPQDQRGFRDALISLGYTVRTKILKEYYDDTSGRYSQKANLDIEIVVDMFNTVDQYDRVVLFSGDGDFERAIELLRSKNTHITVVSTEGMIARELRNATDRYIDLNDIRDQIEKTEG
>NZ_CP040094.1|WP_174710128.1|3295287_3296892_-|2-isopropylmalate-synthase
MTNKTDRIIIFDTTLRDGEQCPGATLNIDEKLVIAKQLARLGVDIIEAGFAFASPGDFEAVSKIAQIVGIENGPVICSLARAIKADIEAAAEALKPAVKGRIHTFISTSDIHLEYQLRKSRAEVLAIAEEMVAYAKSFMTDVEFSPMDAARSDPEFLYQVLERAIAAGATTVNIPDTVGYTTPSEFGAIIKGIIENVPNIDQAIISVHGHNDLGLAVANFLEAVKNGARQLECTINGIGERAGNASLEELVMALHVRRQYFNPYLGRPEDSQESLTNIDTRQIYKTSRLVSNLTGMLVQPNKAIVGANAFAHESGIHQDGVLKNKLTYEIMDAQLIGLTDNQIVLGKHSGRNAFRTRLKELGFELSDTELNKAFVRFKEVADKKKDISDWDLEAIVNDEIQQAPDLFRVELVQVSCGSNARPTATVTLRTPEGEELTDAAIGTGPVDAVYKAINRVVNVPNELIEFSVQSVTAGIDAIGEVTIRLRYESKVFSGHAANTDIIVASAQAYVNALNRLYASLQTQQKPEEVTAQKV
>NZ_CP040094.1|WP_174710127.1|3294706_3295186_-|GNAT-family-N-acetyltransferase
MLIEKHITIREATTKEDLLIAKHSYQMWLDIGVDESNILPEWQNITLQFIEEARRNLFYKAFIAEIDNTVVGSVSCQLFAGLYPNIFKDEYRKFGYIWGVYVEESYRRQGIAKSLTNRAIEYLKALGCTRVVLNASPLGKLVYSSLGFAEGNIMQLDLI
>NZ_CP040094.1|WP_174710126.1|3293847_3294525_-|SnoaL-like-polyketide-cyclase
MSSEKTTELPLWLQDRDIVIAHDEEVQWREGKRPDYSYTNEFLHQESKFQHPEGSLEAIAQNLVRTFEMEASNKSNPQQWLSIVTDKFKMSTNGGQQFTAQDVADEGTYNLFLGKTEQYDSETETFESSFQVFHTAFPNGFLWELTEVLSGPPNVTFKWRHWGTFNGSYKDYVPTGETIEIVGVSIARVTEDLKIESLEHYFDNNVFLQKLTAGGCPFHSQNQYI
>NZ_CP040094.1|WP_174710125.1|3292576_3293494_-|hypothetical-protein
MAANVPVNLLLALVKNKKWTPEQGLAYALQNPNPQNKVNSLTKLVNYLPPNLQELALQKALAAARAIQDEYHRANALRALAQELPPELLPEALAAARAIQDEYHRANALRALAQKLPPELLPEALAAARAIQDEYHRANALRALAQKLPPELLPEALAAARAIQDESFRADTLSALVQELPPELLPEALTAARAVQFNLFRADTLSALADKLPEILPEALAAARAIQDKYDRANALSALASGLSKMPSTELFPLWQDTLHQLSLRTRPDLLQDIKALFPVIFALGGEAATAELARAIVDVARWWR
>NZ_CP040094.1|WP_174710124.1|3290000_3292451_+|HEAT-repeat-domain-containing-protein
MTKHTRQVLLSALKVVVLCLTLFLLCTSNSWAQITTDSKIAPLIEKLIDNDAHIRSLAADALVNIGSPVVPSLIEALKNQDSNLRWHAASVLGDLGAEAAPAVSALSAALQDEDGQVRLYATLALGNIGTAAKAAVPSLMAALQDKEQFVRIYVPSALRKIGVEAKVAVPVLTAALKDKNPTVRYNSAYALGAMGTEAVSSVPNLIALLNDNQFYVRLGAIKGLGGIAAGFQDKANALPTSKLQKVISDFEEVLTTIQKYKDKFTETDIRLIRRPLNALKAEKETRLFDRVLESLFKHKLLLGIAAYIILLPSIWLILLRVAPLWLLKINNALKPYTDFSLPFISVNVPLRYVLFVGWFHYHPRVLDAWVAKYIKAAREQFPKKDTVSSRACYIPIPVVLDGTTVPQLMNQNLRSTFEKQRSFLVIGGEGGVGKTSLACRIAGWAMAEDEDQQLCKHLMLPVLLEEEFRVTEVKSPLLEAIRGQLQALIDEPEPICQELLLRLLRKKRILVIVDRFSEMNATTREAIEPESPEFPVNALVITSRIEEKLGRVNKTIIKPLRIEANKLSSFMEAYLMQRGKRDRFTDQEFFDACNRLSLMVGQNNITVLLAKLYAEQLIASKDVTSNISALPENIPNLMLGYINELNRDVTDNQFDDRTVHQIAKTIAWECLQQSYQPGTAKRADAIVALANLGIDDPEAHLNYLEKRLHLIQTIGSAKDRIRFCLDPLAEYLAGWYLIELYGNNDGKWRSHFFKKADELVKTGRQDAIKGLLLAVRDCYLSEVQGSKETDFVPQKLGKLAGFTPPVTAVSTVQVIP
>NZ_CP040094.1|WP_174710133.1|3306415_3308017_-|TROVE-domain-containing-protein
MNYNFFTKNKNTTPQNQPIPGREAEMVQGRSGGFMFDAGIWKMLRRCLLVGTAKSTYYAGKQELTEDFVTVVRLAVAENPSRVAEEILYASDGRAINNSAPILALVLLSMGEAPQAKQAFGEIFPQVVRTGSHFYEWLNYTKSLRGFGKVVREAGKTWLSREDVKGLAYQLLKYQQRQGFSHRDALRLFHVKPPTENHRQLFEWVVRGWEELPADIPSEALAQIWWYEWLKRNPTQTHEAISQGRLTHEMAAPVGKMDRQAWQLLFQEMPIGAMLRNLGSLTELGVLRADESDNLLRVEAVLNRREHLRKGRIHPIDVLKALKTYESGGTLGRSKKTWNPVPRIVDILEKAVELSFDVVQPTGKVFMHAVDISGSMGSLVADMGLSCCEIATTMALVTAKAEKNYMIRGFSTEFRELGISAKDSFSSAVRKASNQNFGGTDASVAYDWMIKNKFKADVVCFWTDSESWAGYKHPSQALKEYRKKVNPNVKAVYVTLTPYQITLVNPEDSLSWDLAGFDPGTPRIIQMLATGEL
>NZ_CP040094.1|WP_174710134.1|3308865_3309600_+|hypothetical-protein
MSEKPIEDNGKAFLVLLLPISFLIIFLVATWRILLALIVLAIGFKIWQEYQWQQWTVRVNPIFHQLVRENQGRLTPMDLAIKGNFPGTTAKRYLDGKASEFGASIVNSEEAGQSYYFITASILGNILDSSEPVKELPAQPVTKTARSLLAAPPPTTLEEEETETESIPQLTQTHEEAKRSLEKQLIFGSLIQSELAKRLNVYSSTVYKRRNDPEFPEWSRSKDPDGIAWSYSEKTKEFFPVEEE
>NZ_CP040094.1|WP_174710135.1|3309648_3310779_-|quinone-dependent-dihydroorotate-dehydrogenase
MDIYKFAISPLLFNVVKTDPEWLHQQTIRSFSWLSQTPTSWANQRLQKSLCLYDSRLEQNLFGLNFPNPVGLAAGFDKDGVAAGIWSNLGFGFAELGTVTFHAQPGNPRPRLFRLPLDKAALNRMGFNNLGAAAMAARLTQEKQESTHLIPIGINLGKSKVTPLEEAAQDYLGSFRLLKDLGDYFVVNVSSPNTPGLRSLQDASMLSAILNLLQQENNAHKPIFVKIAPDLDWVAIADIISLAKTYQLAGIIATNTTIRRDGLKTQVINQTGKSPQEEAGGISGEPLRDRSTEVIRFIWQQTQGEIPIIGVGGIFSPEDAWEKITAGASLIQVYTGWIYEGPLMVRRILAGLLSKLEQSGLNSIKEAVGLEVKNKK
>NZ_CP040094.1|WP_174710136.1|3311016_3313938_+|GAF-domain-containing-protein
MGQPQKPIAAEQQILSLGRVLQNLREEDEVDVLIETTISYLKEQFDYKLIWIALYDRLNHILFGKGGITPDRDTSFLYQKVVLSPGDLLEQVVIEQHPLGIADLQTEIRAAEWRKIAEKLQIQGTIILPIRYKDRCLGLLLLGSERWGYLLTGEAKARLMMVLGELGALLYQQEIHKQQKQTKRTDEPLLELLENLRTLSNLNQRLEAGVQATHKFISPSRTNVYWFEREGRYFWCRMSNQLVKSDRNSSTQQAAGMTVQDLSDFYYALAVNQIVSIGDARSSLKSHFTAKLLQKLKVRSLLAAPIIWQKNLLGFLAVESNEPRIWTEADKNFVQGVAGLISLIAPNESMESTIKQIQEDAQLTGQVAQGIYSEHELQETLHSCAKKVLARLTATRFLLLQYDPEQNNYQFIYQSQPQNRRPLTFTLNTLKELDGQLLQRSTEAVEIENLDEDLRFFNWRPSLLESGVRSLLICKCTNGHIPAALLVITHETYRSWTTLEKELLWAVSQQIGVIVRQWQLHNRTTQQQKTSQAFEQCLNILTQTQNSKAEVNKKNLEHIALEQIASILGCPLALLLSWSPGENLAEIIPGVIENSQFGIFSDASIPIQSEALIQWALVTENYLTLKVDNLPLETRKWLNTPDKGQILVMALRTNADYEITGVVLLADYQERRWSQQNLNAIATLISQLAWWRRQKQITRLLESTTEELRQLNWYKHRRLEEIQRITALSLKQIHDLGIPANELTQMRYQLLLRQLDHTATSMSGMLKLENWQLHISWETMPIASLLKRSLERIDNLLKQQKLWIGVHGLGQPIDEQESAKNSPLARGVPTSSPQSAMAIAGDIVKIELVIHELLVTACNRSPIGGRIDIWCRRLDASKPSDSKHLSTSGGGEQTSLELSITYNGAIEAQLLTELHDNTPKDVLAPSNLDQPPALHLLICQNLMQELGGELNFYQLPDNRVVSRLLLPLVSHDS
>NZ_CP040094.1|WP_012407669.1|3314145_3314340_+|DUF2256-domain-containing-protein
MGRVRSKSDLPTKICPVCQRPFTWRKKWQDCWDDVKYCSERCRRRRSEAQNETNRNTDANSAGD
>NZ_CP040094.1|WP_174710137.1|3314339_3315293_+|isoaspartyl-peptidase/L-asparaginase
MELQVQPKLIIHGGAGSSLHGKGGLEAVRRSLHTVIEEVYSLLLSGATASEAVVQGCQMLEDNPRFNAGTGSVLQSDGQIRMSASLMDGALERFSGVINISRVKNPIELAQFLQNSPDRVLSDFGSAELAREMQLPSYNALTDLRLQEWMQERQDNFKSTMAGVVAEPELLETSNAGRGTIGVVALDVCGRLAAGTSTGGKGFERIGRVSDSAMPAGNYATSNAGVSCTGIGEDIIDECLAPRIVVRVTDGMSLKEAMQRSFGEAHQNKRDLGAIALDANGAIAWGKTSEILLAAYHDGEKIGDTLEWTGNELIGYC
>NZ_CP040094.1|WP_174710138.1|3315283_3315727_-|DUF29-family-protein
MEELLELRQFLEQGKIHEALLLVDELEEISLSDKINKIDSYGVILLIHLIKQKAEKRSTRSWDVSIENTVREINKINKRRKSGGYYLNQAELIDILQQGYQVALKRAALEAFVRAAFRRKGRYETQELAAMVNQEETLTEALKLIQQ
>NZ_CP040094.1|WP_174710139.1|3315838_3317218_-|bifunctional-UDP-N-acetylglucosamine-diphosphorylase/glucosamine-1-phosphate-N-acetyltransferase-GlmU
MVVVAILAAGRGTRMKSRLPKVLHSLGGLTLVERVIESVEPLSPSRRIVIVGYQSEEVQTAMHSIPNLEFVEQTVQLGTGHAIQQLLPHLEDYTGDLLILNGDLPLIRSETLQQMLQTHAQNQNAATILTSYLLDPTGYGRVFCNDENIVQQMVEHKDCTAAQRQNQRINAGVYCFRWPDLAKVLPYLQANNAQKEYYLTDAVTQVGKVMAVDVEDYQEILGINDRLQLATAYEILQKRVKEKWMLAGVTLIDPTSITIDETVELQPDVIIEPQTHLRGNTVIKTGSHIGPGSLIENSQLSENVTVQYSVVIDSTVQAGSRIGPYTHLRGYVQVGANCRVGNFVELKNTQLGDRTNAAHLSYIGDTVVGNQVNIGAGTITANYDGVKKHRTKIGDRTKTGANSVLVAPITLGDDVYIAAGSTVTEDVPNDSLVIARSRQVVKPGWQRKSVGNKTTDQHK
>NZ_CP040094.1|WP_174710140.1|3317371_3318601_-|two-component-system-response-regulator
MIQWKSNHTGFTEQIVSESNPISTVKSIGSNHVVGSQNNVEAYSLGLSQEDLILEDRQAVSSWIKSDINCGNDSLVSRTLQTKGSKVNGFDFDPPKVLVVDDHAASRMTAVALLGMEGYEVIEADRGSTVVGLVTQKQPDLILLDVMMPGMDGFEVCQLLKQDEQTRLIPVIFITALNDRRSRIRGIEVGADDFLTKPFDRVELAARVKSLVRQKRLNEDLDHAEQVLFSIAMSIESRDPNTGNHCERLVKLGQLFGEYLNLSRYQIRDLMWGGYLHDIGKVGIPDAVLLKKDQLTAKDWEIMKQHVLIGEKICQPLRSMRGVIPIIRHHHERWDGSGYPDALKGDDIPYLAQVFQLIDIYDALSSERPYKIAFTTEEALLVMLEESNSGWRNPKLMQQFAEFIRYCQE
>NZ_CP040094.1|WP_174710141.1|3319305_3320229_-|hypothetical-protein
MSDLENFTPKLTADGSFTFVSEEFGESFHSHYGAKQESFFKFVEPTQLATVAQKPVLRLLDICYGLGYNTAAALQTIWAVNPSCYVEVIGLELNPAVPQAAIAHHLFDNWNCNYIDIFSQLAFEHQVQTDRLKAKLLIGDARTTIVLVHQSDFSADAIFLDPFSPPQCPQLWTVEFIKQLSLCLDQDGLLATYSCSAAVRTALLSAGLAIASTPPVGRRSPGTVAAHSASGESQNRSIFTPLSQVEEEHLLTRAAIPYRDPGLSDSTEVIVMRRQQEQQASSLEPTSRWQKRWLLRTQGRDFMGSNL

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Crispr_ID: NZ_CP040094_18

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040094_18

3813113-3813308

Orphan

N:A

Consensus_repeat	Method
CTCCACCATCAAGAATGTCATTACCTGCCCCACC	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP040094_18

>merge|NZ_CP040094|18|3813113-3813308|CRISPRCasFinder
CACCTCCAGCCAGGATGTCATTGCCAAGTCCACCTAGAAGCGTGTCATTACCTGCTCCACCATTGAGGTTGTCATTACCTACTCCACCATCAAGAATGTCATTACCTGCCCCACCAAGAAGTGTATCATTGTCAAGTTCACCTAAAAGTATGTCATCGGCTGCTCCACCATCAAGAATGTCATTACCTGCCCCACC

>NZ_CP040094|18|17|3813113-3813308|CRISPRCasFinder
CACCTCCAGCCAGGATGTCATTGCCAAGTCCACC	TAGAAGCGTGTCATTACCTGCTCCACCATTGAGGTTGTCATTACCTA
CTCCACCATCAAGAATGTCATTACCTGCCCCACC	AAGAAGTGTATCATTGTCAAGTTCACCTAAAAGTATGTCATCGGCTG
CTCCACCATCAAGAATGTCATTACCTGCCCCACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040094.1\|WP_174710536.1\|3822606_3823146_+\|DOMON-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|187685
NZ_CP040094.1\|WP_174710530.1\|3810117_3810900_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224052
NZ_CP040094.1\|WP_174710529.1\|3808449_3809493_-\|low-specificity-L-threonine-aldolase	unknown	unknown	gnl\|CDD\|224919
NZ_CP040094.1\|WP_174713669.1\|3802287_3802587_+\|ATP-grasp-domain-containing-protein	unknown	unknown	gnl\|CDD\|372976
NZ_CP040094.1\|WP_174710524.1\|3800397_3801831_-\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP040094.1\|WP_174710526.1\|3804876_3805374_-\|quercetin-2,3-dioxygenase	unknown	unknown	gnl\|CDD\|380345
NZ_CP040094.1\|WP_174710535.1\|3821491_3822610_+\|aminoglycoside-phosphotransferase-family-protein	unknown	unknown	gnl\|CDD\|366736
NZ_CP040094.1\|WP_174710542.1\|3831570_3832206_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|226607
NZ_CP040094.1\|WP_174710541.1\|3829627_3831337_+\|fumarate-reductase/succinate-dehydrogenase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|181346
NZ_CP040094.1\|WP_174713670.1\|3807766_3808204_+\|thermonuclease-family-protein	unknown	unknown	gnl\|CDD\|224442
NZ_CP040094.1\|WP_174710540.1\|3828424_3829495_+\|Mrp/NBP35-family-ATP-binding-protein	unknown	unknown	gnl\|CDD\|378455
NZ_CP040094.1\|WP_174710528.1\|3807117_3807681_+\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|223394
NZ_CP040094.1\|WP_174710525.1\|3802617_3804600_-\|glycogen-debranching-enzyme-N-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|283786
NZ_CP040094.1\|WP_174710527.1\|3805752_3807021_+\|GAF-domain-containing-protein	unknown	unknown	gnl\|CDD\|236901
NZ_CP040094.1\|WP_174710538.1\|3824459_3826796_-\|sulfatase-like-hydrolase/transferase	unknown	unknown	gnl\|CDD\|293749
NZ_CP040094.1\|WP_174710531.1\|3811021_3812461_+\|MCE-family-protein	unknown	unknown	gnl\|CDD\|178642
NZ_CP040094.1\|WP_174710534.1\|3819946_3821257_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371690
NZ_CP040094.1\|WP_174710539.1\|3826884_3827883_-\|formylglycine-generating-enzyme-family-protein	unknown	unknown	gnl\|CDD\|335469
NZ_CP040094.1\|WP_174710537.1\|3823387_3824263_-\|bile-acid:sodium-symporter	unknown	unknown	gnl\|CDD\|223462
NZ_CP040094.1\|WP_174710533.1\|3819263_3819473_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP040094.1\|WP_174710536.1\|3822606_3823146_+\|DOMON-like-domain-containing-protein	gnl\|CDD\|187685	cd09627, DOMON_murB_like, Domon-like domain of UDP-N-acetylenolpyruvoylglucosamine reductase. UDP-N-acetylenolpyruvoylglucosamine reductase (murB) catalyzes an essential step in peptidoglycan biosynthesis, the reduction of UDP-N-acetylglucosamine-enolpyruvate to UDP-N-acetylmuramate. A subset of these FAD-dependent enzymes contains a C-terminal DOMON-like domain. DOMON domains can be found in all three kindgoms of life and are a diverse group of ligand binding domains that have been shown to interact with sugars and hemes; initially DOMON domains were suspected to confer protein-protein interactions. The DOMON-like domain in murB may bind a heme.	8.58382e-59
NZ_CP040094.1\|WP_174710530.1\|3810117_3810900_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224052	COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism].	2.24585e-124
NZ_CP040094.1\|WP_174710529.1\|3808449_3809493_-\|low-specificity-L-threonine-aldolase	gnl\|CDD\|224919	COG2008, GLY1, Threonine aldolase [Amino acid transport and metabolism].	1.05039e-157
NZ_CP040094.1\|WP_174713669.1\|3802287_3802587_+\|ATP-grasp-domain-containing-protein	gnl\|CDD\|372976	pfam14243, DUF4343, Domain of unknown function (DUF4343). This domain family is found in bacteria, eukaryotes and viruses, and is typically between 127 and 142 amino acids in length.	2.65576e-09
NZ_CP040094.1\|WP_174710524.1\|3800397_3801831_-\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	1.84968e-60
NZ_CP040094.1\|WP_174710526.1\|3804876_3805374_-\|quercetin-2,3-dioxygenase	gnl\|CDD\|380345	cd02215, cupin_QDO_N_C, quercetinase, N- and C-terminal cupin domains. This family contains quercetinase (also known as quercetin 2,3-dioxygenase, 2,3QD, QDO and YxaG; EC 1.13.11.24), a mononuclear copper-dependent dioxygenase that catalyzes the cleavage of the flavonol quercetin (5,7,3',4'-tetrahydroxyflavonol) heterocyclic ring to produce 2-protocatechuoyl-phloroglucinol carboxylic acid and carbon monoxide. Bacillus subtilis quercetin 2,3-dioxygenase (QDO) is a homodimer that shows oxygenase activity with several divalent metals such as Mn2+, Co2+, Fe2+, and Cu2+, although the preferred one appears to be Mn2+. The dioxygen binds to the metal ion of the Cu-QDO-quercetin complex, yielding a Cu2+-superoxo quercetin radical intermediate, which then forms a Cu2+-alkylperoxo complex which then evolves into endoperoxide intermediate that decomposes to the product. Quercetinase is a bicupin with two tandem cupin beta-barrel domains, both of which are included in this alignment model. The pirins, which also belong to the cupin domain family, have been shown to catalyze a reaction involving quercetin and may have a function similar to that of quercetinase.	1.34121e-34
NZ_CP040094.1\|WP_174710535.1\|3821491_3822610_+\|aminoglycoside-phosphotransferase-family-protein	gnl\|CDD\|366736	pfam01636, APH, Phosphotransferase enzyme family. This family consists of bacterial antibiotic resistance proteins, which confer resistance to various aminoglycosides they include: aminoglycoside 3'-phosphotransferase or kanamycin kinase / neomycin-kanamycin phosphotransferase and streptomycin 3''-kinase or streptomycin 3''-phosphotransferase. The aminoglycoside phosphotransferases inactivate aminoglycoside antibiotics via phosphorylation. This family also includes homoserine kinase. This family is related to fructosamine kinase pfam03881.	1.57015e-22
NZ_CP040094.1\|WP_174710541.1\|3829627_3831337_+\|fumarate-reductase/succinate-dehydrogenase-flavoprotein-subunit	gnl\|CDD\|181346	PRK08275, PRK08275, putative oxidoreductase; Provisional.	0
NZ_CP040094.1\|WP_174713670.1\|3807766_3808204_+\|thermonuclease-family-protein	gnl\|CDD\|224442	COG1525, COG1525, Micrococcal nuclease (thermonuclease) homologs [DNA replication, recombination, and repair].	6.74131e-27
NZ_CP040094.1\|WP_174710540.1\|3828424_3829495_+\|Mrp/NBP35-family-ATP-binding-protein	gnl\|CDD\|378455	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.	3.23017e-127
NZ_CP040094.1\|WP_174710528.1\|3807117_3807681_+\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	gnl\|CDD\|223394	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription].	3.37517e-22
NZ_CP040094.1\|WP_174710525.1\|3802617_3804600_-\|glycogen-debranching-enzyme-N-terminal-domain-containing-protein	gnl\|CDD\|283786	pfam06202, GDE_C, Amylo-alpha-1,6-glucosidase. This family includes human glycogen branching enzyme AGL. This enzyme contains a number of distinct catalytic activities. It has been shown for the yeast homolog GDB1 that mutations in this region disrupt the enzymes Amylo-alpha-1,6-glucosidase (EC:3.2.1.33).	1.88752e-166
NZ_CP040094.1\|WP_174710527.1\|3805752_3807021_+\|GAF-domain-containing-protein	gnl\|CDD\|236901	PRK11360, PRK11360, two-component system sensor histidine kinase AtoS.	1.30354e-47
NZ_CP040094.1\|WP_174710538.1\|3824459_3826796_-\|sulfatase-like-hydrolase/transferase	gnl\|CDD\|293749	cd16025, PAS_like, Bacterial Arylsulfatase of Pseudomonas aeruginosa and related proteins. Sulfatases catalyze the hydrolysis of sulfate esters from wide range of substrates, including steroids, carbohydrates and proteins. Sulfate esters may be formed from various alcohols and amines. The biological roles of sulfatase includes the cycling of sulfur in the environment, in the degradation of sulfated glycosaminoglycans and glycolipids in the lysosome, and in remodeling sulfated glycosaminoglycans in the extracellular space. The sulfatases are essential for human metabolism. At least eight human monogenic diseases are caused by the deficiency of individual sulfatases.	0
NZ_CP040094.1\|WP_174710531.1\|3811021_3812461_+\|MCE-family-protein	gnl\|CDD\|178642	PLN03094, PLN03094, Substrate binding subunit of ER-derived-lipid transporter; Provisional.	8.27773e-39
NZ_CP040094.1\|WP_174710542.1\|3831570_3832206_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|226607	COG4122, COG4122, Predicted O-methyltransferase [General function prediction only].	7.08977e-24
NZ_CP040094.1\|WP_174710539.1\|3826884_3827883_-\|formylglycine-generating-enzyme-family-protein	gnl\|CDD\|335469	pfam03781, FGE-sulfatase, Sulfatase-modifying factor enzyme 1. This domain is found in eukaryotic proteins required for post-translational sulfatase modification (SUMF1). These proteins are associated with the rare disorder multiple sulfatase deficiency (MSD). The protein product of the SUMF1 gene is FGE, formylglycine (FGly),-generating enzyme, which is a sulfatase. Sulfatases are enzymes essential for degradation and remodelling of sulfate esters, and formylglycine (FGly), the key catalytic in the active site, is unique to sulfatases. FGE is localized to the endoplasmic reticulum (ER) and interacts with and modifies the unfolded form of newly synthesized sulfatases. FGE is a single-domain monomer with a surprising paucity of secondary structure that adopts a unique fold which is stabilized by two Ca2+ ions. The effect of all mutations found in MSD patients is explained by the FGE structure, providing a molecular basis for MSD. A redox-active disulfide bond is present in the active site of FGE. An oxidized cysteine residue, possibly cysteine sulfenic acid, has been detected that may allow formulation of a structure-based mechanism for FGly formation from cysteine residues in all sulfatases. In Mycobacteria and Treponema denticola this enzyme functions as an iron(II)-dependent oxidoreductase.	8.34582e-82
NZ_CP040094.1\|WP_174710537.1\|3823387_3824263_-\|bile-acid:sodium-symporter	gnl\|CDD\|223462	COG0385, COG0385, Predicted Na+-dependent transporter [General function prediction only].	1.94203e-25
NZ_CP040094.1\|WP_174710534.1\|3819946_3821257_+\|hypothetical-protein	gnl\|CDD\|371690	pfam11717, Tudor-knot, RNA binding activity-knot of a chromodomain. This is a novel knotted tudor domain which is required for binding to RNA. The know influences the loop conformation of the helical turn Ht2 - residues 61-6 3- that is located at the side opposite the knot in the tudor domain-chromodomain; stabilisation of Ht2 is essential for RNA binding.	8.40548e-09

>NZ_CP040094.1|WP_174710531.1|3811021_3812461_+|MCE-family-protein
MRGLMTSRFASGRTFREGSVGLLLLVGLGVFGLLFLWLNRFTAAGRSYKIIVEFANAGGMQKGAIVRYRGVKVGTISQVLPKANAIDIEIEIAQTDLIIPRNVVVEANQSGLISESIIDITPKTTLPAGVVIARPLDKSCDSSLIVCNGSRLKGQIGISVDELIRSSTDLASSYNDPKFYRNVNRVLETTTGAASSFTELSQDLQGLTKSLRQQLNTFSATANSVQRATNQLNTSANQTVNKFGATATQANRLLNNLDNLLTTNRSSLVGALNNITETSNQLRVTVSSLSPSVNRLTKGELLNNLEALSANAAQASANLRDASKTLNDPKNAVLLQQTLDSARVTFENTQKITSDLDELTGDPNFRKNLRQLVNGLSGLVSSTQEMQQQVQVATTLDSVKAAVSKPNNLIPTPAPTQQAMSNDKSLPVYEVNPSPANFESSDINLQPTPNPSIPNSSQEVLLKQLREYGKQREQLEMEK
>NZ_CP040094.1|WP_174710530.1|3810117_3810900_+|ABC-transporter-ATP-binding-protein
MTEPLIELKGVSKSFGSHKVLDNVDLTIYRGEALGIIGPSGTGKSTILRVMAGLLAPDEGEIYVQGVRRDGLIEDAGQPVGIGMVFQQAALFDSLTVEENVGFLLYQNSKLPRSRIRDLVKEKLEMVGLPSISHLYPAELSGGMRKRVSFARAIMSNPDNPSEGPEVLLYDEPTAGLDPIASTVIEDLIRYLQCLHGVCSTYAVVTHQDSTIRRTTDRLIFLYEGRVQWQGTVSEIYNTENPLIKQFMSGSVQGPIQVVG
>NZ_CP040094.1|WP_174710529.1|3808449_3809493_-|low-specificity-L-threonine-aldolase
MSSNLEQFASDNSSGICPEALEYTIRANQGSVPAYGNDEWTQKATDYFRELFEIDCEVFFTFNGTAANSLSLAALCQSYHSVICHETSHIETDECGAPEFASNGSKLLLAQGKNGKLTSESIEAIVTRRTDIHYPKPKVISITQSTELGTLYSIEELLKIKEVAKKYNLKIHMDGARFANAVAAMNKSPAEITWKTGVDVLCFCGTKNGMALGEAILFFNKELAEDFDYRCKQAGQLASKMRFISAPWLGLLETGAWLKNAKHANQCAEYLENQLLNIEGVDLMFPREANAVFVKLPEQVIHTLKAKNWQFYTFIGVGGVRFVCSWNTTQSRIDELIDDIKKAIITI
>NZ_CP040094.1|WP_174713670.1|3807766_3808204_+|thermonuclease-family-protein
MELLELMLVLATVVGVTDGNTILVKNNAGQTIPVRLACINAPKAVGQVYTLAATQSLKQLLPPKTPVVIRSIEQLQNGRTVGEVFVDNRSVNLLLVESGNAVVDRESLQNCYESKTQYLIAEANAKNKHLGLWQQSNMQLKFHSK
>NZ_CP040094.1|WP_174710528.1|3807117_3807681_+|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase
MEKYQLSPKNWSQEIYIKALKKAAYAHQGQKMAGSEIPYLMHLNLVSMEVIAAISVETEHDGNLAIQCAILHDTIEDTNTTFEEIRTEFGESVANGVLALTKDETLAKNLQMADSLQRIKKQPKEIWMVKLADRITNLQAPPHYWTQDKIIRYREEGIQIYEALQDASPFLACRLAKLIEDYKAFIN
>NZ_CP040094.1|WP_174710527.1|3805752_3807021_+|GAF-domain-containing-protein
MSKTSDDEILLHNQTWQRERQIIIRLSSLNYLTGELGSYLHNIACGVSELIGVDWTVVTFCQEGFETVLASSLEMGEGEHIYSLHGLLTGTVIQMGHSLAVKDAQKHPEYGQAPEGYCAYLGIPLRTAENKVIGTICSFNHQPRDFTKEDIQIVELFAERAATAIDNYHLYQQQCKFNHILEAEVEKRTAELQATQAKLLEQERLAAIGEFAAMIVHEIRNPLTTMIMGLKYFQKTILTESAQERLALALNESSRLERLLSEILLYAKPQVLQLCELDVNELIHDLLVYIHEMPEALERKIEFVPVLPTVKVLGDKDKLKQVFINILRNACEAVAPGDIVKWEVGCSDINKVYINVHNGGAPIPSEFISKLSQPFFSTKPCGTGLGLAITKRIVNAHNGELSICSDILTGTIVSIQLPVVPF
>NZ_CP040094.1|WP_174710526.1|3804876_3805374_-|quercetin-2,3-dioxygenase
MTVNLQGILQQPGQGSSYWVLGDLYTFKAVGEETGQAYALVEITVQPQNGTPPHIHSHEDEAFYIQEGELEFQLDEQIIIATPGTFLHSPKGQLHRFSNIGAKPAKLLCWFTPAGLEKFFMEVGVPVSDRMQLPSVSPADMEKAMTAASKYGLEIIPPSAASSQV
>NZ_CP040094.1|WP_174710525.1|3802617_3804600_-|glycogen-debranching-enzyme-N-terminal-domain-containing-protein
MCIEFGREICGNLDTAESREWLVTNGIGGYASGTVAGLLTRRYHGLLLTALKPPLGRTLLLAKLDETILYDNRSYSLDTNRWADGTVSPHGYQNIERFSLEGTIPLWRFAVADALLEKRVWMQQGVNTTYVQYTLRRATQPLKLTLKAMVNYRDYHSDTQSNGWKMSIEEVEQGICVTAYPGAVPMYLLSDGGSASVADNWYYGFDLAVERYRGLRDREDHLHAATFEVTLNPGEAIAFVASTEKQANLNAEAALKLRRAQEQKLTGIWKTNQPLKTKESPIWIKQLILAADQFIVDRPVPEDPNGKTIIAGYHWFGDWGRDTMISLPGLTISTGRPEVARSILRTFARYVDQGMLPNRFPDAGEQPEYNTVDATLWYFEAVRAYYSATDDDTLLGELFPILADIIDWHCRGTRYNIHLDPADGLLFAGVAGVQLTWMDAKVDDWVVTPRIGKPIEVNALWYNALRRMAKFARHLGKPHQEYEAMADRAKYRFSRFWNEETGYCYDVLDSPDGDDAALRPNQIFAVSLPESPLTLAQQKSVVEVCGRSLLTSHGLRSLAPDHPQYQGKYGGNQYQRDGAYHLGTVWGWLLGPFVLAHLRVYKNPEQARQFLEPMANHLTTHGLGSLSEIFDGDAPMTARGCIAQAWTVAEVLRAWLATEN
>NZ_CP040094.1|WP_174713669.1|3802287_3802587_+|ATP-grasp-domain-containing-protein
MQKFRGSIEGGICVRRIEDFVPETERRYFVVSGKAFAALPDEEVPEIVEECAKRIGSQFFSVDVIERRDGTKRIVEIGDGQVSDIVEWTAERFAQLWLR
>NZ_CP040094.1|WP_174710524.1|3800397_3801831_-|HAMP-domain-containing-histidine-kinase
MKQIRKVWINIDLFSLQSRLTIGIAAFSGLVLGSLATWTSWKMQQILVDSHKYNIEQIAKRLPQDVQIYSEMMQPETGLQKAINNLANTNILLWLKSPDNKIIVKSATLDLVSDTKVAELMSLTKMPIKPQVYQVNESYFVLCGSSVQVKGKLLGELFVVKDITREQKMFLGMVQSLAIISVLAIIILTAAIAFYIQRSLQPLRQLNQMAAVISAEDLGQPQLSVDNAPSEVKELAQTLTMLLSRLSQSWKQEREFVSNVSHELRTPLTIVHGYLQSVLRRQNNLTQTQQEALETAASEAERTIRLLQDLLDLARADNGYLYFQMKSYVLNDLVEEVVMMAKKYSDRIIKIESKFDGIEVKADYSRLKQVLLNLIDNAIKYSEADTPIIFKLNQLEDKAIIQVCDKGYGIPLQQQARIFERFYRVDESRSHTTGGCGLGLSIVKTLVEGMGGSVSVQSKLGEGSTFTITLPTYSSAI
>NZ_CP040094.1|WP_174710533.1|3819263_3819473_-|hypothetical-protein
MMILSYVRPNAEVSFCIYPFVSMGSDRPTNQCNRSGGCSDRFRTVYEVRTTLDKSQERSHLIHRFGSFG
>NZ_CP040094.1|WP_174710534.1|3819946_3821257_+|hypothetical-protein
MDKSIIQLVDELPTDNITVKVLKALDYVAPGEWSNLTGFENSIRSITGVTDAKVIQRIRDRAVVLYEDPQKGYQFAIKLYQTIDKADTAMAAAALANKVSEKIGFLSFLGNITPKADVTQSIDLALKIAVEIIAFCKLNGIPQPNPQEFANSLTNNYQNASLMRMVALVCIDGILPLGPDFLSKIHGVISGTDAGAITQNPVFLAVNNFLPGNNPSDKVGFISQGFNSVQGWMNNLVSKTGVTPQSISSNLGSFIQIADDNLDFVAVFLDQTTNYYEHTGTQTVARGLILEAYTLVKEEMKQEQQKPIQDVSSASVVKSDKVQYEVSKTVEVWDGEDEDWYQGTIEKIQDDQFFIHYLGYGSSYDEWVGEDDIRTRDLRAADDNGYAVGQKVKCWDEDQEAWYSATIQQIQNQQYFVHYVGYDSSYDEWVDSDEIS
>NZ_CP040094.1|WP_174710535.1|3821491_3822610_+|aminoglycoside-phosphotransferase-family-protein
MTEEFNRQRAENLVAIADQFAQVGKVTAVKAFGSGNINDTFLVTLDSPKEQHFVLQRINTQVFRQPKLIMQNMRTLTEHVHKQLQHISLNRRWEVPRVLLTKDAQDHCQDADGSFWRAISFIEGSQSFDTMRDRSQAKEIGYALGMFHNLISDLPPEKLADTLQGFHITPLYLQDYEKVLAKTSASQSSEVNYCLQFVSDRQAFAHILENAKAEGKLPLRLMHGDPKINNVMFDIVTQQAVSVIDLDTVKPGLVHYDIGDCLRSGCNQAGEETENWESVHFDTDLCQGILQGYLSVAKAFLTDNDYAYIYDAIRLIAFELGLRFFADYLAGNVYFKVKHPEHNLARAIVQFKLTESIESQETQIRNIIKDLK
>NZ_CP040094.1|WP_174710536.1|3822606_3823146_+|DOMON-like-domain-containing-protein
MNNQTFSLQPFPSTKSLPNLKIAGNISRNSNQFAIHYLLEGDLKEIAIAQPSNTPSRKHELWKDTCFEFFLGIKYSQQYWEFNLSPSGHWNVYRLDGYRQGMQEETAFENLPFNVQNQSDSLALALNVDLDKIISMEQAIEVAITSVIKDRDGEVIYWALTHRGTEADFHLRDSFIIEL
>NZ_CP040094.1|WP_174710537.1|3823387_3824263_-|bile-acid:sodium-symporter
MNEIIPILDKLAFLSFVVATMFGTGLKLTLQQIWEPLRNIRLVILSLVANFLIVPLFIYLLLQVVPVTEPVKAGFIIMALASGPPALPKLAQIVKGNLAFSTGLMMLLMFGTVFYMPIALPLVLQGVQVNSWDIAKPLILLMLTPLGIGLFLKAKSEDIALNFQAITFKISNFGLLLGLVVRLVVHFNEIIILLKTGVIFVCAIFIIFSFTVGYLLGGPGIDTQRVLGVGTAQRNFAAALLIGTSNFDDPNVVSTIMVTSLLMMVSVLILGKKLTEVDQGQGAKVESVEIS
>NZ_CP040094.1|WP_174710538.1|3824459_3826796_-|sulfatase-like-hydrolase/transferase
MLSLIFRAIVLSLVITLLIVSNPALAATSKVLPIRPPSFEGEIGITYKESTPDFPAPITAPKNAPNVLLVLLDDVGFGQASTFGGSVETPNLTRLAEKGLRYNQFHTTALCSPTRAALLTGRNHHSVGTGVVAELATGYPGYTTILPKSAATVAEVLRQNGYNTAAFGKWHNTPDYETSAVGPFDRWPTGLGFEYFYGFLGGDTNQWSPALVENTKRVAPPINNPDYHLTPDLVDHAIAWIRSQQSIAPEKPFFTYLATGATHAPHHAPKAWIDKYQGKFDRGWDKLREEIFVRQKQLGVIPANAQLTPRAKEFPAWDSLSQDEQRIYAHEMEVFAGFLAHTDYEVGRLIDAIDKLGELDNTLVIYIVGDNGASAEGGLTGSVNELKVFNRIPESQEQLLASLNDLGSPKTFNHYHAGWAWAGTTPFQWTKQIASHFGGTRNPLVVAWGNQIKDRGGLRSQFHHVIDITPTILEATGITVPTEVNGVKQQKIEGTSLVYTFDDPDASSQRKTQYFEMFGNRAIYNNGWIAAARHPRLPWQGTINADFEQDPWELYNIEKDFSEANNLADKNPEKLEKLQKLFLSEARKHKVLPLDDRVSERFDVKIRPSLGAGRTTFIYYPGAVPIPEGSAPNLKNRSFTITADVEIPENGAEGVLLTQGGRFAGWGFFLEDGKPTYTYNFANAERYIIQSPEKLPPGKATIGFDFDYDGGVGAGGTGKLFIDNQQVAQGRIEKTIPYRVALDETFDVGRDTGTPVVDTYQVPFAFTGNLQKVTLNLK
>NZ_CP040094.1|WP_174710539.1|3826884_3827883_-|formylglycine-generating-enzyme-family-protein
MRKKHCFLTLLLIQLVALILLLSNLSALAVTVNLCPPEMVLIPGGIFNMGADDSGFVEERTAKNVTVTSFCIDKYEVTNTQFAEFVKATKYVTVAQRPLPKEQFPDLPDEQRLPGSLVFHQPKQGVKQVQFLSWWHWTPGANWQHPFGSYSTVVGKENYPVVHIAYEDALAYAIWAGKSLPTEAQWEYAARGGLDSATYTWGNQYSEKKANTWQGIFPFFNTKADGYIGTAKVGSFSANGYGLYDMTGNVWEWTSDWFSLGHDNKAHSVNPTGASKSFDPKKPTEIALHVIKGGSYLCAPNYCSRYRPAARESQAPDTGTSHIGFRLVKNLV
>NZ_CP040094.1|WP_174710540.1|3828424_3829495_+|Mrp/NBP35-family-ATP-binding-protein
MSSHQLPFQRSDEEVQASSGDSLTIARKQEVVQLLKQISDRILKNDIISLGMVRNLRIVDDYIYLRLYIGSHQHQLETEIQTVLSSLTWSKKTYIQLCTIPGVRTTLAVSSGKGGVGKSTTAVNLAAALQLAGAKVGLLDADVYGPNVPQMLGLGKSEVKVIDTPKGQRFVPLEVHGIKVMSVGLLAEADHPLAWRGPVLHKIITQFIHEVEWGELDYLLIDLPPGTGDAQITIVQESPICGVILVTTPQNVAISDVRRSVYMFRQVGVPVIGIIENMSYFMGNGGEKIPIFGSGGGQKLVEELKAPLLGQIPIDPLICNGGDIGKPLTLVDPNSKASQVFVQVAGALDATFSGSM
>NZ_CP040094.1|WP_174710541.1|3829627_3831337_+|fumarate-reductase/succinate-dehydrogenase-flavoprotein-subunit
MDINTQRIKTDVLVIGGGTAGTMAGIKAKQANPDAEVLILEKANIRRSGAIAMGMDGVNTAVIPGHSTPEQYVREITLANDGILNQKAVYQTGKLGYEVIQELESWGVKFQKDVQGNYDLKQVHRVGKYVLPMPEGKDLKTILTRQVKRHKVKVTNRVMATRVLVKEGHAIGAVGFDVRNGDYIVIQAKAVILCTGACGRLGLPASGYLYGTYENPTNAGDGYSMAYHAGAELSNIECFQVNPLIKDYNGPACAYVAGPFGAHTANAEGNRFISCDYWSGQMMLEIWKELNSGKGPVQLKMTHLDEDTIAEIESILWANERPSRERFHQGRNEDYRTHGVEMHISEIGLCSGHSASGVWVNENAQTTVPGLYTAGDMASVPHNYMIGAFVFGRIAGTHAIEYIQDLDFIEPDVDFLEAEKARIYAPLTRPNGVPHTQVEYKLRRLVNDYLQPPKSGNKIEIGLKHFVQYQETLDLMGARDPHELMRSLEVHFIRDCAEMAARASLYRQETRWGLYHYRLDYPKKNDDEWFCHVNLKKDELGQMILFKRPVDPYIVEVDTVKESYSVAAK
>NZ_CP040094.1|WP_174710542.1|3831570_3832206_+|class-I-SAM-dependent-methyltransferase
MSYPYNIELPTLVIRSHEQAEHLGFPMMPQGRPIGKSAPTTTITPADGALLRALVAGYPAGRICEIGTGAGVSTAWLISGMLPNSSLLSCEINPELASAAISFFKEFQFVEIRAGDWSQVLSAEAPFDLLFFDVNAREVLIDADNWPQVASLVRIGGKIIMDDLTPVELWPPEWKDNIDYKREFCLCNPQIAGVEVRTTKNTVSLICTRIY

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Crispr_ID: NZ_CP040094_19

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040094_19

3853367-3853462

Orphan

N:A

Consensus_repeat	Method
TAATATTATTTTTGTTAAATTACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040094_19

>merge|NZ_CP040094|19|3853367-3853462|CRISPRCasFinder
TAATATTATTTTTGTTAAATTACTCTCTGCTTGTGAGGACGGGACTAAATTCAACCACTTTTGCATTGGAGCTAATATCATTTTTGTTAAATTACT

>NZ_CP040094|19|18|3853367-3853462|CRISPRCasFinder
TAATATTATTTTTGTTAAATTACT	CTCTGCTTGTGAGGACGGGACTAAATTCAACCACTTTTGCATTGGAGC
TAATATCATTTTTGTTAAATTACT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040094.1\|WP_174710561.1\|3861354_3862221_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174710555.1\|3850700_3851918_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|349941
NZ_CP040094.1\|WP_174710564.1\|3865211_3865919_+\|ribosome-maturation-factor-RimM	unknown	unknown	gnl\|CDD\|234650
NZ_CP040094.1\|WP_174710566.1\|3869117_3870779_+\|DUF1565-domain-containing-protein	unknown	unknown	gnl\|CDD\|284923
NZ_CP040094.1\|WP_174710554.1\|3849699_3850602_+\|undecaprenyl-diphosphate-phosphatase	unknown	unknown	gnl\|CDD\|376891
NZ_CP040094.1\|WP_174710549.1\|3839148_3840042_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_114083839.1\|3838811_3839090_+\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	unknown	unknown	gnl\|CDD\|182475
NZ_CP040094.1\|WP_174710559.1\|3857548_3858463_+\|DUF1338-domain-containing-protein	unknown	unknown	gnl\|CDD\|319960
NZ_CP040094.1\|WP_174710553.1\|3848440_3849121_+\|ATP-dependent-dethiobiotin-synthetase-BioD	unknown	unknown	gnl\|CDD\|234625
NZ_CP040094.1\|WP_174710558.1\|3856026_3857346_+\|acetyl-ornithine-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|235599
NZ_CP040094.1\|WP_174710565.1\|3866398_3868780_+\|phosphoketolase-family-protein	unknown	unknown	gnl\|CDD\|235379
NZ_CP040094.1\|WP_174710550.1\|3841033_3844669_+\|response-regulator	unknown	unknown	gnl\|CDD\|236848
NZ_CP040094.1\|WP_174710557.1\|3854672_3855722_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_CP040094.1\|WP_174710551.1\|3844828_3845845_-\|ribose-phosphate-pyrophosphokinase	unknown	unknown	gnl\|CDD\|235072
NZ_CP040094.1\|WP_174710548.1\|3837709_3838570_+\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|223390
NZ_CP040094.1\|WP_174710552.1\|3846704_3848441_+\|protein-kinase	unknown	unknown	gnl\|CDD\|270916
NZ_CP040094.1\|WP_174710563.1\|3863806_3865090_+\|valine--pyruvate-transaminase	unknown	unknown	gnl\|CDD\|236517
NZ_CP040094.1\|WP_174710562.1\|3862339_3863449_-\|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|176260
NZ_CP040094.1\|WP_174710556.1\|3852406_3852679_-\|DUF2281-domain-containing-protein	unknown	unknown	gnl\|CDD\|378366
NZ_CP040094.1\|WP_174710560.1\|3858713_3860708_-\|VCBS-repeat-containing-protein	unknown	unknown	gnl\|CDD\|238363

Protein	Function_ID	Function_description	E-value
NZ_CP040094.1\|WP_174710555.1\|3850700_3851918_+\|amidohydrolase	gnl\|CDD\|349941	cd08021, M20_Acy1_YhaA-like, M20 Peptidase aminoacylase 1 subfamily, includes Bacillus subtilis YhaA and Staphylococcus aureus amidohydrolase, SACOL0085. Peptidase M20 family, uncharacterized subfamily of bacterial proteins predicted as putative amidohydrolases or hippurate hydrolases. These are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. Aminoacylase 1 (ACY1) breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine). This family includes Staphylococcus aureus amidohydrolase, SACOL0085, which contains two manganese ions in the active site, and forms a homotetramer with variations in interdomain orientation which possibly plays a role in the regulation of catalytic activity.	0
NZ_CP040094.1\|WP_174710564.1\|3865211_3865919_+\|ribosome-maturation-factor-RimM	gnl\|CDD\|234650	PRK00122, rimM, 16S rRNA-processing protein RimM; Provisional.	1.4906e-68
NZ_CP040094.1\|WP_174710566.1\|3869117_3870779_+\|DUF1565-domain-containing-protein	gnl\|CDD\|284923	pfam07602, DUF1565, Protein of unknown function (DUF1565). These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans. Some of these proteins also contain characterized domains such as pfam00395 and pfam03422.	4.5897e-39
NZ_CP040094.1\|WP_174710554.1\|3849699_3850602_+\|undecaprenyl-diphosphate-phosphatase	gnl\|CDD\|376891	pfam02673, BacA, Bacitracin resistance protein BacA. Bacitracin resistance protein (BacA) is a putative undecaprenol kinase. BacA confers resistance to bacitracin, probably by phosphorylation of undecaprenol. More recent studies show that BacA has undecaprenyl pyrophosphate phosphatase activity. Undecaprenyl phosphate is a key lipid intermediate involved in the synthesis of various bacterial cell wall polymers. Bacitracin, a mixture of related cyclic polypeptide antibiotics, is used to treat surface tissue infections. Its primary mode of action is the inhibition of bacterial cell wall synthesis through sequestration of the essential carrier lipid undecaprenyl pyrophosphate, C55-PP, resulting in the loss of cell integrity and lysis. The characteristic phosphatase sequence-motif in this family is likely to be the PGxSRSGG, compared with the PSGH of the PAP family of phosphatases.	3.33271e-86
NZ_CP040094.1\|WP_174710552.1\|3846704_3848441_+\|protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	8.20545e-63
NZ_CP040094.1\|WP_114083839.1\|3838811_3839090_+\|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein	gnl\|CDD\|182475	PRK10457, PRK10457, hypothetical protein; Provisional.	1.0943e-09
NZ_CP040094.1\|WP_174710559.1\|3857548_3858463_+\|DUF1338-domain-containing-protein	gnl\|CDD\|319960	cd16350, VOC_like, uncharacterized subfamily of the vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	7.21285e-95
NZ_CP040094.1\|WP_174710553.1\|3848440_3849121_+\|ATP-dependent-dethiobiotin-synthetase-BioD	gnl\|CDD\|234625	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD.	1.51796e-82
NZ_CP040094.1\|WP_174710558.1\|3856026_3857346_+\|acetyl-ornithine-aminotransferase-family-protein	gnl\|CDD\|235599	PRK05769, PRK05769, acetyl ornithine aminotransferase family protein.	0
NZ_CP040094.1\|WP_174710565.1\|3866398_3868780_+\|phosphoketolase-family-protein	gnl\|CDD\|235379	PRK05261, PRK05261, phosphoketolase.	0
NZ_CP040094.1\|WP_174710550.1\|3841033_3844669_+\|response-regulator	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	1.28218e-66
NZ_CP040094.1\|WP_174710557.1\|3854672_3855722_-\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.1437e-66
NZ_CP040094.1\|WP_174710551.1\|3844828_3845845_-\|ribose-phosphate-pyrophosphokinase	gnl\|CDD\|235072	PRK02812, PRK02812, ribose-phosphate pyrophosphokinase; Provisional.	0
NZ_CP040094.1\|WP_174710548.1\|3837709_3838570_+\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl\|CDD\|223390	COG0313, COG0313, Predicted methyltransferases [General function prediction only].	1.81877e-144
NZ_CP040094.1\|WP_174710563.1\|3863806_3865090_+\|valine--pyruvate-transaminase	gnl\|CDD\|236517	PRK09440, avtA, valine--pyruvate transaminase; Provisional.	0
NZ_CP040094.1\|WP_174710562.1\|3862339_3863449_-\|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase	gnl\|CDD\|176260	cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding.	0
NZ_CP040094.1\|WP_174710556.1\|3852406_3852679_-\|DUF2281-domain-containing-protein	gnl\|CDD\|378366	pfam10047, DUF2281, Protein of unknown function (DUF2281). Members of this family of hypothetical bacterial proteins have no known function.	5.39514e-05
NZ_CP040094.1\|WP_174710560.1\|3858713_3860708_-\|VCBS-repeat-containing-protein	gnl\|CDD\|238363	cd00707, Pancreat_lipase_like, Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.	5.33348e-30

>NZ_CP040094.1|WP_174710556.1|3852406_3852679_-|DUF2281-domain-containing-protein
MTTKEQINQELEKLPEPLLQEILDFVQFLQVKHEKNSISSDTQPDQTLITEHTLTGFTAEDLLEFVGSWEGSDIRECLQLVHDSRIPLEF
>NZ_CP040094.1|WP_174710555.1|3850700_3851918_+|amidohydrolase
MVSTFPNSSSVDLSRIRLAIRSLQPQLVEWRRRLHQQPELGFQEKLTAEFVSQKLQEWGIEHQTGIAHTGIVAIIKGNKQGAEKVLAIRADMDALPIQELNEVPYKSQHNGVMHACGHDGHTAIALGTAYYLQQHRQDFSGTVKIIFQPAEESPGGAKPMIEAGVLKNPDVDAIIGLHLWNNLPLGTVGVRAGALMAAVECFNCTILGKGGHGALPHQTVDSVVVAAQIVNALQTIVARNVNPIDSAVVTVGELHAGTKRNVIADTARMSATVRYFNPSLKGFFNQRVEQIIAGICKSHGASYDLEYWSLYPPVINDIKIAELVRTVAEEVVETPLGIVPECQTMAAEDMSFFLQEVPGCYFFLGSANPEKDLAYPHHHPRFDFDETALGMGVEIFVRCVEKFLN
>NZ_CP040094.1|WP_174710554.1|3849699_3850602_+|undecaprenyl-diphosphate-phosphatase
MMLSFVVASAVCGNGSEVNLDFANLSWIDVIILGIVQGITELLPISSTAHLRIVPTLLGLKDPGSAFSAAMQLASLTAVLVYFWQDLKKLTGETVRAISGQDYQSSSLQLMLGLLIGTFPIAVAGVLLKPILNACNSPMRGLVVIGVASIIMSGLLAIAEKRGGRDRTFDNLNLWDGIWVGVAQAFALIPGVSRSGSTLTAGLFLGMERETSARFSFLLGLPAVILAGAVELHTLTKAGLSTAGWLTLLVGLISASISAFAAIWGLLRYLEKHSTLIFVFYRFAMGLFLIVAVMAGWLQN
>NZ_CP040094.1|WP_174710553.1|3848440_3849121_+|ATP-dependent-dethiobiotin-synthetase-BioD
MLNTLLITGTDTEAGKTVLTTALAAYWQKYYPQRSWGIMKPIQSGIGDREWYQKLFALEQSLEEITPLYFEAPLAPPIAAARENRQVDLALVWQALSKLRSQRDFVLVEALGGLGSPVTEELTVADLAGEWRLPTVLVVPVRLGAIAQAVANVALARQLRVNLKGIVLNCIQPRTDAEIADWTPQQLIQSLTNMPVLGCLPYLDNLTDLDKLAQVVSDLDWETLML
>NZ_CP040094.1|WP_174710552.1|3846704_3848441_+|protein-kinase
MQPPITVGTVLQNRYRIIQILGQGGFGRTYLAEDQRRFNELCAIKELISTATEAVAWEKAKELFHREAAILYQIEHPQVPKFRERFEQDQRLFLVEDYVAGQTYRAMLAERQAIGKTFTEAEVLQLIQSLLPVLEHIHSRGIIHRDISPENIILRDSDAKPVLIDFGVVKELATRLRSPESAMPETTVGKLGYSPSEQMQTGGAYPSSDLYALAVSAIVLLTGKEPRDLFDENQLTWNWQRWVKVSPRFAQVLNRMLNHIPSDRYQSAASVSQALQPLEQVSLPPLNASNLQTMAVSRRPDSAPPPALPKKQPDPLIPPSSTSSVLDNPLAIAAIAITVVFVAGFGSWALVSSIRSQSKPSPTETLPQNFPSPVISGGTTFTATPTPTTEQPISRRLNLGANNTATVTDTLKTNQIIRYTFFGQKGDKLTALIDPTSSVLLTVLSPNEQPLAQNIQPITAYEGILLVTGRYTIELTLASGVAESNYNLNVSLEKSVKPIPTETPIPIPTETPLPIPTETPFPIPTETPIPIPTETPLPIPTETPFPIPTEIPIPPPTTGETPTLPPVNETQPFSGQRN
>NZ_CP040094.1|WP_174710551.1|3844828_3845845_-|ribose-phosphate-pyrophosphokinase
MNSNRGSAVLSSATFKVQASSTGMTDNHRLRLFSGSANLQLSQEVARYLGMDLGPMIRKRFADGELYVQIQESIRGCDVYLIQPCCQPVNDHLMELLIMVDACRRASARQVTAVIPYYGYARADRKTAGRESITAKLVANLITEAGANRVLAMDLHSAQIQGYFDIPFDHVYGSPVLLDYLASKQLPDLVVVSPDVGGVARARAFAKKLNDAPLAIIDKRRQAHNVAEVLNVIGDVKGKTAVLVDDMIDTGGTIAEGARLLREEGARQVYACATHAVFSPPAMERLSSGLFEEVIVTNTIPIPENNRFPQLVVLSVANLLGETIWRIHEDTSVSSMFR
>NZ_CP040094.1|WP_174710550.1|3841033_3844669_+|response-regulator
MFNRLKIGTKIGVSFALSLATLTTIGLISYQSTNDLIETSRKETHTYQVLSQLEDLNLQLTNAETGQRGYIITGEQRYLEPYNAAIELLNQKVKELQRLTADNPNQQNRLDTLQPLLTERMAVMKDVIELRQSQGLEASQKAILTDQGKQLMDQIQKVIQAMKTEENALLKQRSERARAAARQTIASIIYSIPLFSSILGLIGFALTRHISAPLKQVSGLAEKMADGDLSVSLPDSDRYDEIGVLTRTFNQMIVNLRNTTQKNEEQNWLKSNLAEFTQMLQGQRNLENASSLILSNLAPLVGASQGVFYAMTSINDQPVLKLLSSYAYKERKNLANQFRLGEGLVGQCALEKQRILLTEVPSDYIRISSGLGEAPPLNIIVLPIVFETQVSAVIELASFESFSHLHLTFLEQLSENLGVFLNNIASQLQTQQLLEESVALTEELQTQQEELQQSNQRLEEQAHELEESQFLVKQSNEELQQLNEELEEKAELLEVQNREVAHKNQEVERARKSLEEKAEQLTLSSKYKSEFLANMSHELRTPLNSLLILARLLADNSLNNLTDKQVEYSRTIYSAGTDLLELINDILDLAKIESGTMSLDIEQIAFADLETSLEQTFRQVAHNKELSFTIELDSKLPSTIYNDSKRLQQVLKNLLANAFKFTEQGGVKLEISMSSDAAEIENPMIAFSVSDTGIGIAAEKQKIIFEAFQQADGTTSRKYGGTGLGLSISRELAQLLGGRIELVSEPGQGSTFTLYLPRRQEKNNQNTFTPPQPITIRQASTRKEVPLVENRPTNVDTSSTAKVLTTSAHEIPDDREIIQPGDRTLLIIEDDDKFARILLDMAREQGFKAIVALQSKQGLALAQQFKPDAIMLDIYMPEMDGWTVLDRLKHKPDTRHIPVHILSVDERQQRGLQLGAITYLQKPVSPEALTQVLTDIKGFIERQVRNLLIVEDDPVQAQSIIELIGNGDVHSTAVGTGAEALLILRSQHFDCMVLDLGLPDMSGFALIEQIKQETRLLKLPIIVYTGKELSRQEETQLRGLAETIIIKNVRSPERLLDETALFLHRVQANLPPPKRQMLEQLHQNDPVLANRKILIVDDDLRNIFALTSFLESYQMQVLFAENGRDGIERLQTNPDINIVLMDIMMPEMDGYETTRAIRQQQQFRSLPIIALTAKAMPGDREKCIEAGASDYITKPVDTEQLLSLLRVWLYR
>NZ_CP040094.1|WP_174710549.1|3839148_3840042_+|hypothetical-protein
MTLEKERRTIVVFAKCSDAQLALQELKASNFPMHKVSVIARNAEEQSDIAGVEVKDSTSNTSSEGTDIALTGSALGDLNDLLAGLVFRVIPGVGQVMVAGAQAIAIASNLASCLPDVLVSLGIPKEQAEGYSDLVCKGYHLVMITGIDIEIRLAKRIFNRRDLQHWGVYESYSTPNSRYKHAIGIFSRHHNLERALTELRTAGFPMSQVSIIAKVTSNISDISDVNISSSQDIYPTLGIPDDLARYYQHQVAGGHYLIVIKGTDIYIAGARAILESNNIKDFSIHSQSELDLAKSDR
>NZ_CP040094.1|WP_114083839.1|3838811_3839090_+|GlsB/YeaQ/YmgE-family-stress-response-membrane-protein
MTNIIAWLVLGLIAGALAKLFYPGTQGGGILSTIILGILGAVVGGYLGQVLLGSSSAAAASVGALSLGSILFAVLGAMLLIFLWGLLTRRAV
>NZ_CP040094.1|WP_174710548.1|3837709_3838570_+|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MQTDPKPRTLYVVGTPIGNLEDITFRAVRILQTVDIIAAEDTRHTGKLLQHFQVKTPQVSYHEHNRTSRIPELLEHLVNNKAIALVSDAGMPGISDPGYELVKACIEAGISVVPIPGASAAITALSASGLPTDRFVFEGFLPAKTQQRQEYLESLQTESRTLIFYESPHRLRDTLQDLAKVWGSDRQIVLGRELTKLYEEFWRGTIAEAIAHYSQREPQGEYTLVVAGIPASQPQLTEEELKAELKMLISQGISRSQASRQLAKFTSLPRRQLYQLALSLVVTPES
>NZ_CP040094.1|WP_174710557.1|3854672_3855722_-|serine/threonine-protein-kinase
MTWASGQKLHRDRYEIKQQLGQGNFAITYLAKDRDVKDVVIKTLNSNLLNQLSNEDRDRLKSGFADESRKLAICKHPNIVQVIDTFESGDLKCMVMEYIQGDNLAKIVQPRGFLPAKEALDYIQQIGKALIVVHEQGFLHRDVKPENIILRSGSHEVVLINFDLARRFVDNPVSSRGNLVDKFTPIELYSNSPRQQARRKPWTDIYSLAATLYFLLTGKLPESAIERQDNNKRLIPPQELNNQISDRVNDAIIHAMKLESDKRPKTVEDWLKELGWRRRFTFPSLGNKRLQLLLAAILAAGALATKIEPLISALNNGVQLIDRFFSSPSTPTNPSTQQTPSSPTQPQNR
>NZ_CP040094.1|WP_174710558.1|3856026_3857346_+|acetyl-ornithine-aminotransferase-family-protein
MLSIPINLNLPRTPHLITSLPGPRAQAIVQRDRAVTSPSYTRDYPLVVSRGQGCMIEDVDGNVFLDMTAGIAVTATGHAHPEVVKAIQEQSARLLHMSGTDFYYEPMVELAEQLAIRASFPQPQINSAFPAKVFFTNSGAESNEGAIKLARYYTKRSLIVAFLGAFHGRTYGAMSLTGSKAVQRANFGPLVPGVTHIPYGTHASLDYLEKQLFGTILPPQEVAAIVVEPIQGEGGYIVPEDGFLQRIRDICDRHGILMVVDEVQAGMGRTGRLFAIEHWGVMPDIITTAKGIASGLPLGAILARPELMTWPPGSHATTFGGNPVACAAGIATLRLLESGLMANATQMGEFLQASLTKLHQRFPRVSPPRGKGLMVAVDLLDKQGNLDRELRDRIIQEAFLRGLLLLGCGKAAIRFCPPLVIDSDQIQIALQIISEILSS
>NZ_CP040094.1|WP_174710559.1|3857548_3858463_+|DUF1338-domain-containing-protein
MKPEIALNLWKLLWQEYSARVNHARTYQQMITTAGGIVANDHIAFRSLRLLVDSPQGQVNLGIDYLAQFADALGYVAAGEYNFAQTHLYARHYRHPQQEEFNLPKLFISELIVDELSANIAQLISKTVSAIPHQLASPVTLLKKDAEIETIAKQLQQVFTRPWLPPRRSVVEEVNQVTQYGAWVLLHGYGVNHFTGYVNGQNTPKYPDIDTTASGLAHLGVPMKAEIEGNVACGLRQTATQAVTEMVTVLDDNSGAEIQIPWTYAYYEIAQRYLVEVEPGKQILFDAFLGSNAQQLFEMTRLSK
>NZ_CP040094.1|WP_174710560.1|3858713_3860708_-|VCBS-repeat-containing-protein
MTVQTISLFGTVSYTNNRNTAYTNDYSSIWAIKNAVFKLQTGDPNNVYNTATNTDPNSFGGTSLSNLANFDPKKKTIFLTHGWGSTPNLAFYNAASKQHLEDQLQALNPGANIIDVDWRLVAGYWDSSNATYGKYSQGPLNYSNTAARVGDVAQALANAMQQLGIDPNNTEIVGHSLGAHVAGLAGLDYKNATGKLIQEVVGLDPAGPNFSLNNGLNPQDAQRVVAIHSSSAILGPLSAVDTKSLGYVVREPSTNEGNLDIFLQTGGSIYGSGYTGTYSDHSLAITAYENLVSGSVYQGLDITTHYVNYDSYGIPTQRPLVPSNSTNFFSLTQLDNLNITGQYTINLDSSNTARTFNPLIVPGWLGGFDTTQTFFTIDAFQHGLDDLVQIWNNNGTAIASVRKNDGNGKFGAYSGETQSNIGGFAGVKKFLAMDANNDKKTDIVELWNNGTAQAAVYQNNGDGTFTALKNTSLGFAFNNQDQFLSVDNSIVKIHDNGNGTVSANTWSLNDSLHPGALTNYLGGSGGGRQYVPLDANADGKTDILEIGGNNWTSVWANNGDGTFGYLNGGWSLGGGQPNSHYVALDINRDGKTDLVQTYDRGDGNAAATVWLNNGNGTFNQGSNTSWLGGLTGFNSQYLALNQLGVPDILQVYGSGGSVHATIWA
>NZ_CP040094.1|WP_174710561.1|3861354_3862221_+|hypothetical-protein
MTQTSNQETNILSKFTSVLGLLGAALFFAGWIYRWSYFYFFQLELNTLDLPAQSFLIVPLQIFLGDGWTICKTAIAFFIAAIAIQATLWLIKTISDTVVSVNKLLLNRIISATQHKRSWTAIQLKSLAEFSFGQLRSVEFLRSLVNEIVIVSWVLIVIFWLARWQGIADARRDAGQNSTLPVVALITPEEKFAVGRKLDDIFTDPSLKGYRIIGDRGLFDDLRGREDNDISNPKEPRVWRLLLERGGWIYLFRALPLNAKPNELPSVLAIQESDKGHIIIRSPEVSKN
>NZ_CP040094.1|WP_174710562.1|3862339_3863449_-|S-(hydroxymethyl)glutathione-dehydrogenase/class-III-alcohol-dehydrogenase
MQVKAAVAYSAGKPLTIETVQLSGPQAGEVLVEVKASGICHTDAFTLSGDDPEGLFPAILGHEGAGVVVEVGTGVTSLKPGDHVIPLYTPECRQCEYCLSFKTNLCQAIRLTQGRGVMPDGTSRFSIDGQMIHHYMGTSTFANYTVLPEIALAKIREDAPFEKVCYIGCGVTTGIGAVINTAKVEPGANVVVFGLGGIGLNVIQGARMVGANMIVGVDINPSKRALAEKFGMTHFVNPQEVEGDLVPYLVDLTKGGADYSFECIGNVKIMRQALECCHKGWGVSVIIGVAGAGQEISTRPFQLVTGRVWKGSAFGGARGRTDVPKIVDWYMQGKINIDDLITHVMPIEQINDAFELMHKGESIRSVVTF
>NZ_CP040094.1|WP_174710563.1|3863806_3865090_+|valine--pyruvate-transaminase
MNPALTQIGAQMSNLTGVRAIMKDIIETLRGGAGQQFINLSAGNPLILPEVEQLWRDCTAQLLASPEYGEVVCRYGSSQGYTPLIQAIANDFNKRYGLNLSDRNILITPGSQTLYFYAVNSFGGYTSSGELKQIVLPLSPDYTGYGGLSLVSKALTAYKPTLDIDEAAHRFKYRPDFSQLSISENTGCILFSRPCNPTGNVLTEDEVKKIAALAAPYNLPVLIDSAYAPPFPALNFTEMTPVFGDNILHCMSLSKAGLPGERVGIAIGDEKWIEVLECFQANIGLHSSRYGQAIAAFAINSGALVEISHTVIRPFYQNKFTVLETSLEQAMPKDLPWFLHRGEGAIFAWLWLQDLPMRDWEFYQLVKQVGVIIVPGSSFFPGLEEEWAHKHQCFRISLTGTDEEIAIAMQRLAKVTEEAYKGAAVTA
>NZ_CP040094.1|WP_174710564.1|3865211_3865919_+|ribosome-maturation-factor-RimM
MKHEEANKEIGGRGAQGHRGKRVGGNSKIQNVQSPAPNPQPVVPNTQSLVPNLDNWLEIGKIVSPQGLSGELKVYPVSDFPERFEVPGKRWLLRLDGTEPQPIELLTGRYISNKNLYVIKLAGVKTCDQAEALRGCKLMVPVSDRPQLAEDEYHVLDLIGVEVFMQASGELVGTVVDIIPAGNDLLEVKFHESFATDKKQKTVLIPFVEAIAPVVDLKSNRIEITPPPGLLEINN
>NZ_CP040094.1|WP_174710565.1|3866398_3868780_+|phosphoketolase-family-protein
MTLATTPQTKPLTDEELRKINAYWRAANYLSVGQIYLLDNPLLREPLKLEHVKPRLLGHWGTTPGLNFIYVHLNRLIKKYDLNTIYIAGPGHGGPGLVANTYLEGTYTEYYHNISQDAEGIKKLFKQFSFPGGIPSHVAPETPGSIHEGGELGYALVHAYGAAFDNPDLIVAAVVGDGEAETGALATSWHSNKFLNPVRDGAVLPILHLNGYKIANPTTLARISHDELESLFVGYGYKPYFVEGEDPADVHQQMAATLETAIAEIQSIQREARVHGFTKRPQWPMIVMRTPKGWTGPKEVDGKKTEGYWRSHQVPFGNIAKQPDHLRLLEDWMKSYKPEELFDANGKLIPELAELAPKKHRRMGDNPHANGGILLHDLKMPDFQDYAVDVSEPGKAIAEATKVTGKFLRDIMRLNQESSNFRIFAPDELASNRLDPVLEVTDRVSTAEIYPEDDHLSTDGRVMEVLSETSCQGWLEGYLLTGRHGFFTCYEAFIHIIDSMFNQHAKWLKTTKHIPWRRPIASLNYLLTSHVWRQDHNGFSHQDPGFIDHVLNKKAEIVRVYLPPDANTLLSVTDHCLKSRNYVNVIIAGKQPALQYLNIDAAIKHCTKGIGIWEWASSDEGSDPDVVLACAGDVPTLETLAAVDILRQHFADLKVRVVNVVDLMTLQPKTEHPHGLSEKDFDTLFTTDKPVIFAFHGYPWLIHRLTYRHTNHKNIHVRGYKEEGTTTTPFDMVVLNDLDRFHLVIDVIDRVPKLGSRAAYVKQQMQDKLIEHKHYIEKYGDDMPEIRDWKWPY
>NZ_CP040094.1|WP_174710566.1|3869117_3870779_+|DUF1565-domain-containing-protein
MAQTFYVNPVSGSDTNAGSQQAPFKTITQALKVSTVDTKIQLADGNYNAASGEVFPLTVPSGVTVVGNETNTGNGILIEGSGTYLSRTFAAQNVTFVLQDKAELRGVTVTNLASRGSGVWIESTAPTVANNTFINCKREGVFATGEANPIILGNLFSENAANGIAIAKNSKGQIQGNTCVKTGFGIAISDTASPILRDNKIYENRSGIVISGSARPLLRNNVSENNTDDGITVIGTALPDIGSTNNLGGNTLRNNDKFDLQNASSNKLVSIGNKIDASKVAGSIEFADSSVPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTPTIELTDISNHWAGGFIRELVKLGIVNGFPDRTFKPDATMTRAQYAALLVKAFNPSPNRPVVKFKDVPADFWASKVIQQAYQGLFLSGFPDNTFGPNKNIQRVQVIVSLVNGLGLSADGTASIKAFDDQAKIPEYAKDEVVKAINKEIIVNYPNLKQLNPTRDATRAEVAAMVYQALVDAGRVAAINSPYILTA

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Crispr_ID: NZ_CP040094_20

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040094_20

4150917-4151018

Orphan

N:A

Consensus_repeat	Method
AGTTTGGCGGTAGGAAAGAAGGCTTTTTGAGCTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040094_20

>merge|NZ_CP040094|20|4150917-4151018|CRISPRCasFinder
AGTTTGGCGGTAGGAAAGAAGGCTTTTTGAGCTGTACCTTTGTACTTTAATGACCAGAGGACAAGTAAAGTTTGGCGGTAGGAAAGAAGGCTTTTTGAGCTG

>NZ_CP040094|20|19|4150917-4151018|CRISPRCasFinder
AGTTTGGCGGTAGGAAAGAAGGCTTTTTGAGCTG	TACCTTTGTACTTTAATGACCAGAGGACAAGTAA
AGTTTGGCGGTAGGAAAGAAGGCTTTTTGAGCTG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040094.1\|WP_174713684.1\|4153460_4154138_+\|ComF-family-protein	unknown	unknown	gnl\|CDD\|223970
NZ_CP040094.1\|WP_174710747.1\|4149863_4150460_+\|tRNA-(ms[2]io[6]A)-hydroxylase	unknown	unknown	gnl\|CDD\|226853
NZ_CP040094.1\|WP_174710744.1\|4142365_4144261_+\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|224271
NZ_CP040094.1\|WP_006195022.1\|4157968_4158106_+\|photosystem-II-reaction-center-protein-K	unknown	unknown	gnl\|CDD\|214347
NZ_CP040094.1\|WP_174710752.1\|4154755_4155529_-\|adenosylcobinamide-GDP-ribazoletransferase	unknown	unknown	gnl\|CDD\|234697
NZ_CP040094.1\|WP_174710751.1\|4154225_4154681_+\|PPC-domain-containing-protein	unknown	unknown	gnl\|CDD\|367843
NZ_CP040094.1\|WP_174710743.1\|4140588_4141503_+\|polyphosphate-kinase-2-family-protein	unknown	unknown	gnl\|CDD\|274737
NZ_CP040094.1\|WP_174713683.1\|4147986_4149552_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|368582
NZ_CP040094.1\|WP_174710754.1\|4156724_4157870_+\|tRNA-guanosine(34)-transglycosylase-Tgt	unknown	unknown	gnl\|CDD\|234642
NZ_CP040094.1\|WP_174710755.1\|4158292_4158589_+\|(2Fe-2S)-binding-protein	unknown	unknown	gnl\|CDD\|223706
NZ_CP040094.1\|WP_012407089.1\|4158706_4158823_+\|photosystem-II-reaction-center-protein-M	unknown	unknown	gnl\|CDD\|235328
NZ_CP040094.1\|WP_174710741.1\|4135050_4135932_+\|TauD/TfdA-family-dioxygenase	unknown	unknown	gnl\|CDD\|367137
NZ_CP040094.1\|WP_174710746.1\|4145537_4147985_-\|WD40-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|238121
NZ_CP040094.1\|WP_163928426.1\|4136189_4137698_-\|UbiD-family-decarboxylase	unknown	unknown	gnl\|CDD\|223121
NZ_CP040094.1\|WP_174710742.1\|4138353_4139973_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP040094.1\|WP_174710748.1\|4150478_4150883_+\|VOC-family-protein	unknown	unknown	gnl\|CDD\|319925
NZ_CP040094.1\|WP_174710749.1\|4151309_4152662_+\|DUF839-domain-containing-protein	unknown	unknown	gnl\|CDD\|253386
NZ_CP040094.1\|WP_174710753.1\|4155907_4156360_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174710750.1\|4152888_4153380_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP040094.1\|WP_174710745.1\|4144424_4145534_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379062

Protein	Function_ID	Function_description	E-value
NZ_CP040094.1\|WP_174713684.1\|4153460_4154138_+\|ComF-family-protein	gnl\|CDD\|223970	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only].	1.48749e-53
NZ_CP040094.1\|WP_174710747.1\|4149863_4150460_+\|tRNA-(ms[2]io[6]A)-hydroxylase	gnl\|CDD\|226853	COG4445, MiaE, Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	5.92686e-99
NZ_CP040094.1\|WP_174710744.1\|4142365_4144261_+\|PAS-domain-S-box-protein	gnl\|CDD\|224271	COG1352, CheR, Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms].	8.12438e-87
NZ_CP040094.1\|WP_006195022.1\|4157968_4158106_+\|photosystem-II-reaction-center-protein-K	gnl\|CDD\|214347	CHL00047, psbK, photosystem II protein K.	6.30328e-17
NZ_CP040094.1\|WP_174710752.1\|4154755_4155529_-\|adenosylcobinamide-GDP-ribazoletransferase	gnl\|CDD\|234697	PRK00235, cobS, cobalamin synthase; Reviewed.	2.1405e-70
NZ_CP040094.1\|WP_174710751.1\|4154225_4154681_+\|PPC-domain-containing-protein	gnl\|CDD\|367843	pfam04151, PPC, Bacterial pre-peptidase C-terminal domain. This domain is normally found at the C-terminus of secreted bacterial peptidases. They are not present in the active peptidase. It is possible that they fulfill a similar role to the PKD (pfam00801) domain, which also are found in this context. Visual analysis suggests that PKD and PPC are distantly related (personal obs:Bateman A, Yeats C).	7.64417e-09
NZ_CP040094.1\|WP_174710743.1\|4140588_4141503_+\|polyphosphate-kinase-2-family-protein	gnl\|CDD\|274737	TIGR03709, PPK2_rel_1, polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which. [Central intermediary metabolism, Phosphorus compounds].	1.35592e-163
NZ_CP040094.1\|WP_174713683.1\|4147986_4149552_-\|ATP-binding-protein	gnl\|CDD\|368582	pfam05729, NACHT, NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.	2.79149e-05
NZ_CP040094.1\|WP_174710754.1\|4156724_4157870_+\|tRNA-guanosine(34)-transglycosylase-Tgt	gnl\|CDD\|234642	PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional.	0
NZ_CP040094.1\|WP_174710755.1\|4158292_4158589_+\|(2Fe-2S)-binding-protein	gnl\|CDD\|223706	COG0633, Fdx, Ferredoxin [Energy production and conversion].	1.86894e-17
NZ_CP040094.1\|WP_012407089.1\|4158706_4158823_+\|photosystem-II-reaction-center-protein-M	gnl\|CDD\|235328	PRK04989, psbM, photosystem II reaction center protein M; Provisional.	7.03526e-15
NZ_CP040094.1\|WP_174710741.1\|4135050_4135932_+\|TauD/TfdA-family-dioxygenase	gnl\|CDD\|367137	pfam02668, TauD, Taurine catabolism dioxygenase TauD, TfdA family. This family consists of taurine catabolism dioxygenases of the TauD, TfdA family. TauD from E. coli is a alpha-ketoglutarate-dependent taurine dioxygenase. This enzyme catalyzes the oxygenolytic release of sulfite from taurine. TfdA from Burkholderia sp. is a 2,4-dichlorophenoxyacetic acid/alpha-ketoglutarate dioxygenase. TfdA from Alcaligenes eutrophus JMP134 is a 2,4-dichlorophenoxyacetate monooxygenase. Also included are gamma-Butyrobetaine hydroxylase enzymes EC:1.14.11.1.	1.12671e-33
NZ_CP040094.1\|WP_174710746.1\|4145537_4147985_-\|WD40-repeat-domain-containing-protein	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	1.13502e-95
NZ_CP040094.1\|WP_163928426.1\|4136189_4137698_-\|UbiD-family-decarboxylase	gnl\|CDD\|223121	COG0043, UbiD, 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases [Coenzyme metabolism].	0
NZ_CP040094.1\|WP_174710742.1\|4138353_4139973_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	6.09407e-24
NZ_CP040094.1\|WP_174710748.1\|4150478_4150883_+\|VOC-family-protein	gnl\|CDD\|319925	cd07264, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family. The vicinal oxygen chelate (VOC) superfamily is composed of structurally related proteins with paired beta.alpha.beta.beta.beta motifs that provide a metal coordination environment with two or three open or readily accessible coordination sites to promote direct electrophilic participation of the metal ion in catalysis. VOC domain is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases. A bound metal ion is required for protein activities for the members of this superfamily. A variety of metal ions have been found in the catalytic centers of these proteins including Fe(II), Mn(II), Zn(II), Ni(II) and Mg(II). The protein superfamily contains members with or without domain swapping. The proteins of this family share three conserved metal binding amino acids with the type I extradiol dioxygenases, which shows no domain swapping.	6.22919e-32
NZ_CP040094.1\|WP_174710749.1\|4151309_4152662_+\|DUF839-domain-containing-protein	gnl\|CDD\|253386	pfam05787, DUF839, Bacterial protein of unknown function (DUF839). This family consists of several bacterial proteins of unknown function that contain a predicted beta-propeller repeats.	7.11992e-94
NZ_CP040094.1\|WP_174710750.1\|4152888_4153380_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.00414e-15
NZ_CP040094.1\|WP_174710745.1\|4144424_4145534_-\|ATP-binding-protein	gnl\|CDD\|379062	pfam13191, AAA_16, AAA ATPase domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily.	1.63676e-07

>NZ_CP040094.1|WP_174710748.1|4150478_4150883_+|VOC-family-protein
MKLQLTHLRLLVSNYKDSFLFYRDLLKFDVDWGDEESGYAELNTGYLKLGLFKKELMAEVVPRIEQPSYIVNRDKIVLVFAVDNVDEVYEQVKNHNAIVVTEPQDRPDWGIRTAHFRDPDGNLIEIYSNLGIVS
>NZ_CP040094.1|WP_174710747.1|4149863_4150460_+|tRNA-(ms[2]io[6]A)-hydroxylase
MLIQLQTINVLKQPTSSAWVEQAIANLDIILLDHSHCERKAAGVALNMMFRYPSNTKMVRELTAIAREELEHFELVNQWLERRNIPLAPLPPPPYGAGLKAQVRPKEPERFLDSLLVTGLIEARSHERLGLLAAHCPEPELAKFYRGLMASEARHYGIYWVLAATYFDREIVMQRLDELAIVESELLATLHSEPRIHS
>NZ_CP040094.1|WP_174713683.1|4147986_4149552_-|ATP-binding-protein
MIEFAAITSVISKYAPQASQLIIKQAQKNEAIINILHELKLNPTQIYDDIDTVYIYALIRYGVFKHEAILNLFREKEIKGYFWDAYSSNTPFKFVENTKKFLNQSSKLKTQLINAKINFLAEIEEFGEAFIAVAKQTKASKYQPYPDWNLDVYSKEFKALIFEKTRLFCGRDFVFKAIQKFFTTQPKGYFSIVGDAGMGKSAIAAKYVLAYKFPCYFNVFAEGRNKPEKFLASIRQQLIKRYSLQNADNTDLRTLLQKASEKLKGQKLVIVVDALDEVEQEGNGNLLDLPQNLPDGVYLLLTRRLYNQETKRLTLSPDTPVYELDLTQGDYTALSQEDVKEYIQLYLNNDSDLKKWINERHISEDSFTQEIAVKSENNFIYLRYLLPGISEGKYNDLNLKGLPQGLQDYYTTHWNRMGMDKESNEKKVKILYILVERGEPISINMIAEILDEEEYEVKSVLNDWVEYVTPKVNADEQKTYYSIYHRSFLEFLKSQDKLGKGRKLFREVNKSMANYMLKEMA
>NZ_CP040094.1|WP_174710746.1|4145537_4147985_-|WD40-repeat-domain-containing-protein
MGKIATKLASKSAEFQNLFLGQFPEQQLKVGNSKKYYETLTDFDFISLKIQYPQFGVETLIRDYYLIDDPEILDRLEEDERVDYGQVKTLKLIERTLQLSAHILNQDPNQLVGQLWGRLQSFPEPEIQKILADAVQSKSENPRFYPITATLTTPGGNLLRTLTGHKASVNAVAITSDGQTAVSASDDNTLKVWDLWTGGEIFSLTGHKALVNAVAIALDGQTAVSASDDNTLKLWDLQTGKEIFTLSGHKDSVNAVAITPDGKTAVSVSNSVELWTLKLWDLETGREISTLRGHKNSVNAVVITPDGQTAVSASSDNTLKLWNLQTGRDFSSLSSHLKLLKLWDLETQREIFTLKGHKNSVNAVVITPDGKTAVSASSDYTLKLWNLQTGREISTLTGHNDLVNAVAITPDGQKVVSASSDNTLKVWNLRTGREMFTLRGHNNSVNAVAITPDGQTIISVSNNLKLWSLKTGKEISTLRGHNNSINSVAITPDGQTAISASSDNTLKLWTLKLWTLKLWNVETRRETFTLRGHRGLVNAVAITPDGKKAVSVSNNLKLWNLKTGWQISTLTGHKDSINAVAITPDGQKAVSSSADTTLKLWDLETGKAISTLRGHTDSVNAVAITPDGKKAVSSSADTTLKLWDLETGKAISTLRGHTDSVNAVAITPDGKKAVSSSADTTLKLWDLETGKAISTLRGHTDSVNAVAITPDGKKAVSSSADTTLKLWDLETGKAISTLSGHKDSVTAVAITPDGQKAVSSSTDTTLKLWDLETGKVISTFTGESSIYCCTVSPDGLTFLIGEHSGRVHFLHLEGG
>NZ_CP040094.1|WP_174710745.1|4144424_4145534_-|ATP-binding-protein
MNNIPKYTAEFEQFINTKNYNFVGREFVFSAIKNFINQYDRGYFTIIGDPGIGKSAIIAHYVSQNSGVVYYNVEIAGKNHVEEFFTNIGTQLIEIAKNKGSANITANFSDFTTEGSGFLSLLLQQISDRLHPDQRLIITIDGCDRIDINNQPRGSNIFYLPRYLPEKVYFILTRRPFLTDKSGLLIETPAQCLDLSNYQEKNRADIQEYIKNYLNKSSHSVDASAASHRVRRFSEDKNTKDVSLNLIEKGFDDDETNFLYVREILAAINEDIYPENLQIYYQNHLDKINLVTSKQQAIGLQVLNILVQEQSTSIETLAQRLDTDEYEIKVILDKWREFLHLKSIATEIYYSLYHASFCDWLSQKIESKF
>NZ_CP040094.1|WP_174710744.1|4142365_4144261_+|PAS-domain-S-box-protein
MTSAERDPKFENLLIYLRQSRGFDFTGYKRSTLMRRVRKRMQSLTIENFEEYLDYLEVYPEEFNYLFNTILINVTAFFRDSSAWEYLADEILPNLIRNKKTSDQIRIWSAGCASGEEAYTLAMLMAEILGAEEFRQRVKIYATDVDEEALNQARQAMYSAKDVQEVSDELRQKYFEIVGNRYVFRQDLRRSVIFGRHDLLQDAPISRLDLLVSRNTLMYFNSETQGRILARFHFALNDNGYLFLGKAEMLLMHSNLFTPIDLKNRIFSKVSSVNIRDRLLVMANSVDEESKSRMSQHLRLRDMGFDTSPIAQVVIDINGSLVMVNEQARTLFALSPKDLARPFQDLELSYRPIELRSLIERAYTERRPITLTNIERYLSNTDTQYLDVRITPLQETDTNFLGISISFHDVTRYIKLQDALQRSQQELETTNEELQSTNEELETTNEELQSTNEELETTNEELQSTNEELETMNEELQSTNEELQTINNELSQRTTELNRANIVLISILRSLQTGIVVIDGTFNISIWNYMVEDLWGLRTDEVLGKSIFSLDIGLPVEQLRSPIRDSFSGKKQFQEMILDATNRRGRQIKCYLAITPLLGMDIQGAVLMMADVERVHSMISSQDMEERRQQE
>NZ_CP040094.1|WP_174710743.1|4140588_4141503_+|polyphosphate-kinase-2-family-protein
MNYDAFIVPPGSKISLKKNYDPAYKADFNEKADAAIKLQADIERLANYQNILYAQNTYALLIIFQAMDAAGKDSTIKHVTSGVNPQGFQVFSFKGPSAEELDHDYLWRTMKALPERGRIGIFNRSYYEEALVVRVHPEMLRKQQLPHFPNGNKIWKQRFEEINNFEKYLVDNGVIVLKFFLNVSKSEQKKRFLERIEYPEKNWKFSDSDVKERAFWDDYMNAYEEVFNKTSTKSAPWYIIPADRKWFTRLVVANIICTKLEELNLQYPIVSDEHRQQLLEAKRILEQEDEQTTLTEKGKKNKLV
>NZ_CP040094.1|WP_174710742.1|4138353_4139973_-|tetratricopeptide-repeat-protein
MDWITLLRSLQSDFIKRLTSGCLLHCETEGQYSELTIISGERLKALREFCWLMAEKYKRVSPVRDVFISYLKGKLGEEVVKERLADFITEVDYEKRFGGDGNIDFTLTSDPSIGIEVKSRHGNIDRVRWSISSEEVEKNAVVVCILIQEDVSEAQSQYHLFLAGFLPTRMIKLKTGKISFGIDQLLYGGGLWCYLEQLQSSINNYSRQQPSIYKYLPKQEILSKPTNNQLLKSFFQPEYNNEDSNTLYAKLGDEYFEKGEYTNAIVNYSKALQAKSTDIDLYYKRGLTHYQIGDYEAAIADYSQAIQMNIQDAKSYNKRGLALSQLGRLEEAINDYTQAIRINPNVAVAYKNRAEARSHIGDNQGAIEDYTQAIKINPDYADAYKNRGIARYLLGSQPGFPQAIKINPKDAIAYKKRGNARSDLGDFEGAIEDYTQAIQINPNYADAYYNRGNAHSDLGDFKRAIEDYTQAIQINYNYADAYYNRGNIRLEIADKQGAIEDFQKAADIYRKEGKLEALKDTREIILDLEIEESLDILKF
>NZ_CP040094.1|WP_163928426.1|4136189_4137698_-|UbiD-family-decarboxylase
MARDLRGFIKILEEKGQLRRISALVDPELEIAEISNRMLQKGGPGLLFENVKGASFPVAVNLMGTVERICWAMNMQHPEELETLGKKLSMLQQPKPPKKISQAIDFGKVLFDVVKAKPGRDFFPACQQVVLQGNDLDLNKLPLIRPYVGDAGKIITLGLVITKDCETGTPNVGVYRLQLQSKNTMTVHWLSVRGGARHLRKAAERGKKLEVAIALGVDPLIIMAAATPIPVDLSEWLFAGLYGGSGVQLAKCKTVDLEVPADSEFVLEGTITPGEVLPDGPFGDHMGYYGGVEDSPLVRFECMTHRKNPIYLTTFSGRPPKEEAMMAIALNRIYTPILRQQVSEIVDFFLPMEALSYKAAIISIDKAYPGQARRAALAFWSALPQFTYTKFVIVVDKDINIRDPRQVVWAISSKVDPVRDVFILPNTPFDTLDFASEKIGLGGRMGIDATTKIPPETDHEWGSPLESDPDVAAMVERRWAEYGLAELQLGEVDPNLFGYDMK
>NZ_CP040094.1|WP_174710741.1|4135050_4135932_+|TauD/TfdA-family-dioxygenase
MNHKIQPISDGIGQEIINIDNSSILELDKEEIIRLFKDYGVLLFRGFDVDVEIFKEFTNLLSTNFINYAGGAFSRKVINGDETLLSVNDFKSEIKLHGEMYYQKNIPLMLWFFCANPPLEDGETTVCDGRKFFNEISSSTKELFSKKKLKFTVQISQEDWQKKYQTDDLNQLEEMCQKNNTYLTVNDDQSILLEYICPAIIPSRCGKYQVFINSLLPTKQLNPKILNFEDGSEIPEEVVSELNDIAEKITTEILWESGDILMIDNTRILHGRRSFADDQRDIYIRLCSPAFSF
>NZ_CP040094.1|WP_174710749.1|4151309_4152662_+|DUF839-domain-containing-protein
MTFSRRKFFAVAGTTAVGTLMVSPMKGLLAQQAYGSRYAIGYGPLLSDPNGLLDLPRGFRYQVISRTGTLMSDGSLEPSNHDGMAAFPGPRNTIILVRNHELSNTSGTKVQVPNPYDPICKGGTTTLIVGRDRKLIKEFSSLGGTIRNCAGGLTPWDSWISCEEDTTITTATNGVTKPHGYNFEVPAKSTSPVEPVPLVEMGRFNHEAVAVDPKTGIVYQTEDRGDSLFYRFIPKQYGNLKAGGTLQALRIKDRPEVNTTTGFVVGQKWDVDWVTIPEPNPTTVDNVRVQGRTLGAARFNRGEGIYYDGNKGKKDKNGKDDKKSKGEFYFTATSGGPVGGGQVWRYIPGEETIELFVESQSKDELDMPDNLVVAPFGDLILCEDGGGDNFLIGVTPSGEIYKFARNALETGEFAGACFSPDGDTLFVNIQSPGITLAIWGPWTGYRGYRD
>NZ_CP040094.1|WP_174710750.1|4152888_4153380_+|GNAT-family-N-acetyltransferase
MKNYYQDFIIRDWVASDRTRAAEVISYVLSEYGLGWEPNGADRDVLRVEEYYLATGGEFWVIEHQSQLVGTGAYYPIHRGEKAVEIRKMYLLPSIRGLGLGKYLLQQLEAAIAKRGFGQIWIETASVLVEAVKLYESNGYTPATGVETTRCDRVYFKPLVISH
>NZ_CP040094.1|WP_174713684.1|4153460_4154138_+|ComF-family-protein
MHTWIKNLTGLLNLFLQSHCPLCQRATSQEFCQNCTRQLQKCQRKDPISLWKEPIPVFGWGEYGGPVKRAIAVMKYENQPQIARPLGQWLGEAWLLNSPKRDSQPVVVPIPLHPSKQKQRKYNQAGLIAQSFCEITGLKLKLNGLARVRETEAQFGLSVSKREKNLAQAFAVGQEFRDRPPNVPVLLVDDIYTTGATARSAVQTLRQYGIVVLGLVAVATAVKDG
>NZ_CP040094.1|WP_174710751.1|4154225_4154681_+|PPC-domain-containing-protein
MNKVFAAGLKQLMIIPATLLAIGVSTSAAFAQNKLYSPIPLSNSTEINDSLSDKDIPTGQGGFARDYTVKLQKGDNLAVDLSSENFDSIITLLAPDGSTVAENDDGPDGSSNSLLFTRIVETGNYVIRVRSFGETGVGAFKLKVTKLQPIK
>NZ_CP040094.1|WP_174710752.1|4154755_4155529_-|adenosylcobinamide-GDP-ribazoletransferase
MTKQQQWWKKLLFKLAASIIFYTSIPLPYLNGLDFQGVARLASLVGLIIGGILGLLDTGMDYLGMPVLTRSALVVSIWIGITGGLHLDGAMDTADGLAVGDPNRRLEVMADSATGAFGAMTAIALVLLKITALTDMPENRCLLLMAACGWGRWGQQVAIARYPYLKPTGKGAFHKQAIRYYKDLLPGLLLLLGLSGLLVLIDKQQLFLALAMIVAGSAIATLTGAWFNHKLGGHTGDTYGAVVEWTEALFLCVLTVF
>NZ_CP040094.1|WP_174710753.1|4155907_4156360_+|hypothetical-protein
MSHHLPDTRIPAPCIINTGIIVNKLDIRRLLADLGRVHYIYTQEDKVLSQGEGDVMEVFANPQRSTLVANHALYLNVCSFDYLELKQSSQQETYFDLIQEGVCLRLIPRSTPIQERRERTFNVSAIEAMMEQVLSARWDAEIDDDCSDSF
>NZ_CP040094.1|WP_174710754.1|4156724_4157870_+|tRNA-guanosine(34)-transglycosylase-Tgt
MSANFSFECLACCSQTKARAGVFFTPHGVVETPRFMPVGTLANVKTITPAQLRDTGAQMILSNTYHLHLQPGEAIVAGGGGLHKFMGWNGPMLTDSGGFQVFSLSEMRKITEEGVTFRSPHDGRIINLTPERSIEIQNTLGADVIMAFDECPPYPATRQEVETATERTYRWLERCITAHQGSEQALFGIVQGGVYLDLRCQAAEALAKLDLPGYAIGGVSVGEPPELMAQIVKVTAPLLPPEKPRYLMGVGTYREMAIAIASGIDLFDCVIPTRWARHGTAIVQGGRWNLKNAKFREDFTPLDETCPCYTCQNFSRAYISHLVRSQEILAYTLLSIHNITELIRFTQHIREAILSDRFTTEFGHWLNEESRDEEWEVGIGD
>NZ_CP040094.1|WP_006195022.1|4157968_4158106_+|photosystem-II-reaction-center-protein-K
MEAALLLAKLPEAYQIFDPLVDVLPVIPVFFLLLAFVWQAAVGFR
>NZ_CP040094.1|WP_174710755.1|4158292_4158589_+|(2Fe-2S)-binding-protein
MGNIKFVKENKEVVAADGANLRLKAMQNDIDIYTFIGKMTNCGGNGQCGTCIVEIVEGIENLSPRTDVENRKFKKKPENYRLACQTLVNGSVSVVTKP
>NZ_CP040094.1|WP_012407089.1|4158706_4158823_+|photosystem-II-reaction-center-protein-M
MQVNDLGFVASILFVLVPTVFLLILYIQTASRQGGKDS

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Crispr_ID: NZ_CP040094_21

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040094_21

4692097-4692189

Orphan

N:A

Consensus_repeat	Method
AAATGCGATCGCGTTAATCTTAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040094_21

>merge|NZ_CP040094|21|4692097-4692189|CRISPRCasFinder
AAATGCGATCGCGTTAATCTTAATGATTTTTGTTGGCTTGCTCAGAAAGGAGATGCGATGAAGATAAGGAAAATGCGATCGCGTTAATCTTAA

>NZ_CP040094|21|20|4692097-4692189|CRISPRCasFinder
AAATGCGATCGCGTTAATCTTAA	TGATTTTTGTTGGCTTGCTCAGAAAGGAGATGCGATGAAGATAAGGA
AAATGCGATCGCGTTAATCTTAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040094.1\|WP_174711078.1\|4686629_4687022_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174711077.1\|4686117_4686438_-\|DUF3040-domain-containing-protein	unknown	unknown	gnl\|CDD\|378610
NZ_CP040094.1\|WP_174711089.1\|4699007_4700564_-\|hydantoinase-B/oxoprolinase-family-protein	unknown	unknown	gnl\|CDD\|223224
NZ_CP040094.1\|WP_174711082.1\|4692734_4692989_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174711085.1\|4694748_4695669_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|375088
NZ_CP040094.1\|WP_174711075.1\|4681304_4683521_-\|dynamin-family-protein	unknown	unknown	gnl\|CDD\|206739
NZ_CP040094.1\|WP_174711083.1\|4693232_4694207_+\|cysteine-synthase-A	unknown	unknown	gnl\|CDD\|182672
NZ_CP040094.1\|WP_174711076.1\|4684019_4686101_-\|dynamin-family-protein	unknown	unknown	gnl\|CDD\|366045
NZ_CP040094.1\|WP_174711086.1\|4695674_4696670_-\|folate-binding-protein-YgfZ	unknown	unknown	gnl\|CDD\|223431
NZ_CP040094.1\|WP_174711073.1\|4680152_4680395_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174711080.1\|4692250_4692460_+\|DUF433-domain-containing-protein	unknown	unknown	gnl\|CDD\|377269
NZ_CP040094.1\|WP_012407766.1\|4678098_4678533_+\|CAAD-domain-containing-protein	unknown	unknown	gnl\|CDD\|372936
NZ_CP040094.1\|WP_174711087.1\|4696877_4698461_-\|PLP-dependent-aminotransferase-family-protein	unknown	unknown	gnl\|CDD\|224089
NZ_CP040094.1\|WP_174711079.1\|4687559_4692092_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|378942
NZ_CP040094.1\|WP_174711074.1\|4680494_4681193_-\|DUF305-domain-containing-protein	unknown	unknown	gnl\|CDD\|226074
NZ_CP040094.1\|WP_174711071.1\|4675429_4677154_-\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|237951
NZ_CP040094.1\|WP_174711072.1\|4678768_4679902_-\|S-layer-homology-domain-containing-protein	unknown	unknown	gnl\|CDD\|306825
NZ_CP040094.1\|WP_174711081.1\|4692427_4692622_-\|DUF433-domain-containing-protein	unknown	unknown	gnl\|CDD\|377269
NZ_CP040094.1\|WP_174711088.1\|4698614_4698830_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174711084.1\|4694266_4694599_+\|(2Fe-2S)-ferredoxin-domain-containing-protein	unknown	unknown	gnl\|CDD\|239278

Protein	Function_ID	Function_description	E-value
NZ_CP040094.1\|WP_174711077.1\|4686117_4686438_-\|DUF3040-domain-containing-protein	gnl\|CDD\|378610	pfam11239, DUF3040, Protein of unknown function (DUF3040). Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.	0.00557348
NZ_CP040094.1\|WP_174711085.1\|4694748_4695669_+\|hypothetical-protein	gnl\|CDD\|375088	pfam17265, DUF5331, Family of unknown function (DUF5331). This bacterial family of unknown function can be found in Cyanobacteria.	2.86774e-21
NZ_CP040094.1\|WP_174711089.1\|4699007_4700564_-\|hydantoinase-B/oxoprolinase-family-protein	gnl\|CDD\|223224	COG0146, HyuB, N-methylhydantoinase B/acetone carboxylase, alpha subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism].	0
NZ_CP040094.1\|WP_174711075.1\|4681304_4683521_-\|dynamin-family-protein	gnl\|CDD\|206739	cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins. The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. This family also includes bacterial DLPs. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes mitofusins (MFN1 and MFN2 in mammals) that are involved in mitochondrial fusion. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner.	8.31972e-41
NZ_CP040094.1\|WP_174711083.1\|4693232_4694207_+\|cysteine-synthase-A	gnl\|CDD\|182672	PRK10717, PRK10717, cysteine synthase A; Provisional.	0
NZ_CP040094.1\|WP_174711076.1\|4684019_4686101_-\|dynamin-family-protein	gnl\|CDD\|366045	pfam00350, Dynamin_N, Dynamin family.	9.86692e-38
NZ_CP040094.1\|WP_174711086.1\|4695674_4696670_-\|folate-binding-protein-YgfZ	gnl\|CDD\|223431	COG0354, COG0354, Predicted aminomethyltransferase related to GcvT [General function prediction only].	4.03218e-64
NZ_CP040094.1\|WP_174711080.1\|4692250_4692460_+\|DUF433-domain-containing-protein	gnl\|CDD\|377269	pfam04255, DUF433, Protein of unknown function (DUF433).	2.55349e-18
NZ_CP040094.1\|WP_012407766.1\|4678098_4678533_+\|CAAD-domain-containing-protein	gnl\|CDD\|372936	pfam14159, CAAD, CAAD domains of cyanobacterial aminoacyl-tRNA synthetase. This domain is present in aminoacyl-tRNA synthetases (aaRSs), enzymes that couple tRNAs to their cognate amino acids. aaRSs from cyanobacteria containing the CAAD (for cyanobacterial aminoacyl-tRNA synthetases appended domain) protein domains are localized in the thylakoid membrane. The domain bears two putative transmembrane helices and is present in glutamyl-, isoleucyl-, leucyl-, and valyl-tRNA synthetases, the latter of which has probably recruited the domain more than once during evolution.	1.42974e-40
NZ_CP040094.1\|WP_174711087.1\|4696877_4698461_-\|PLP-dependent-aminotransferase-family-protein	gnl\|CDD\|224089	COG1167, ARO8, Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism].	2.35585e-142
NZ_CP040094.1\|WP_174711079.1\|4687559_4692092_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|378942	pfam12770, CHAT, CHAT domain. These proteins appear to be related to peptidases in peptidase clan CD that includes the caspases. This domain has been termed the CHAT domain for Caspase HetF Associated with Tprs. This family has been identified as a sister group to the separins.	1.66721e-22
NZ_CP040094.1\|WP_174711074.1\|4680494_4681193_-\|DUF305-domain-containing-protein	gnl\|CDD\|226074	COG3544, COG3544, Uncharacterized protein conserved in bacteria [Function unknown].	6.40524e-56
NZ_CP040094.1\|WP_174711071.1\|4675429_4677154_-\|HAMP-domain-containing-protein	gnl\|CDD\|237951	PRK15347, PRK15347, two component system sensor kinase.	7.5353e-64
NZ_CP040094.1\|WP_174711072.1\|4678768_4679902_-\|S-layer-homology-domain-containing-protein	gnl\|CDD\|306825	pfam00395, SLH, S-layer homology domain.	6.60039e-09
NZ_CP040094.1\|WP_174711081.1\|4692427_4692622_-\|DUF433-domain-containing-protein	gnl\|CDD\|377269	pfam04255, DUF433, Protein of unknown function (DUF433).	2.85393e-20
NZ_CP040094.1\|WP_174711084.1\|4694266_4694599_+\|(2Fe-2S)-ferredoxin-domain-containing-protein	gnl\|CDD\|239278	cd02980, TRX_Fd_family, Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE). TRX-like Fds are soluble low-potential electron carriers containing a single [2Fe-2S] cluster. The exact role of TRX-like Fd is still unclear. It has been suggested that it may be involved in nitrogen fixation. Its homologous domains in large redox enzymes (such as Nuo and hydrogenases) function as electron carriers.	4.04292e-18

>NZ_CP040094.1|WP_174711079.1|4687559_4692092_+|tetratricopeptide-repeat-protein
MSLNFTFALSQQQTFELRCDYGSRRLDQTELAALIDSCEQNYYAQQQDYLPYLTQLGRQLYQWLDGKEGWLRKALDEADEQTINLDLIKTSEAQGLNPETERVALGLAHLPWELLNDGAEFLIERQNLSVLPVRFVQQRQTQVIGVQNRPLRLLFMATSPEDPRVALLGFEQEEANILQATKDQPLALIVEESGSVAELANLVQSYPEDYFDVFHLTGHGIIYTKNYSFLLPKGATLPDNTPCFITEDEVGNMQLTTVNDLAKAFRGRWPRITFLSGCHTGQVANKGTVPSMAQALVKAGAGIVLGWARPVYDRTGIVAAQALYQALATGATVEEAVKAAQQEMIEQKCTDWHLLRMYRDTRPIAELVTPLRTRNRERLTFTAPEQEFLDENNQVKVASRFEFVGRRRPLQRCLKALQETSDQIGVFIAGMGGLGKSTLAARLCTRVEMQRDNFARVVVIGPLDEIGLLTKLSNKFERFADVPALLNEPKVSLKGRLQNFFAAIEKEHNQPLLLVLDDFEQNIPVKDGSLRMTAEAYDILGAICAALEENGAESRLIVTCRYLKEDTLPPHRLHLESLAEMSSSDIDKICFPLDKEVRQQLKTQRIIHIADGNPRLLKWLLEVIQQPGIAADELLNRLEATEQKFRENILAQTLLDALEPEEQKFLARLSVFNLPVTVEIINAISPSVASLQKLVSLSLVESATTHPTQPANYRVTTILESLLETVLIQEEWQVTRQQAVREIHQVWWEENDNPTEAEALEIVRLGLLAKEQEIAVSVGHSIASNWVNDSRFVEALELCKQVLAVFQDYRILGTIAPAEEVLGFVQEAVTHYQQALDLCPEEELQEKAATLNNMAQVIAQQGDIPKAIALWEQSLEIKEQIGDVKGKAATLNNMALVFADQGDIPKAIALWEQSLEIKEQIGDVKGKATTLNNMALVFADQGDIPKAIALWEQDLEISEQIGDVKGKAATLNNMAQVFADQGDIPKAIALWEQSLEITEQIGDVKGKAATLNNMAQVIAQQGDIPKAIALWEQSLEIKEQIGDVKGKAATLNNMALVIAQQGDIPKAIALWEQSLEISEQIGDVKGKAATLNNMAQVIADQGDIPKAIALWEQSLEIKEQIGDVKGKAATLNNMAQVIADQGDIPKAIALWEQSLEIKEQIGDVKGKAATLNNMAQVIADQGDIPKAIALWEQSLEISEQIGDVKGKAATLNNMAQVIADQGDIPKAIALWEQSLEITEQIGDVKGKAATLNNMAQVIAQQGDIPKAIALWEQSLEIKEQIGDVKGKAATLNNMALVIAQQGDIPKAIALWEQSLEIKEQIGDVKGKAATLNNMAQVFADQGDIPKAIALYEQVVSTLAQISAYSDLVTVLSNLGLTDESNGLVYLAQAMWLTLRIQAPLSQTIRLINSLYNRVPQGDELEALLGATAMFFCNYRGEGHPQLEELQELSVNIISGAAVAQGIETPEAFQAWYVQQRLNNHEYFLPRLNQRLEEIVGDEWLFDRSQVSMGE
>NZ_CP040094.1|WP_174711078.1|4686629_4687022_-|hypothetical-protein
MPRKTRSSSVLEKTEKRVIGFKSIDSSLDFGDSISLNNLIQLTGQLRNQIDQYNMMLTTLDSAKAKIETLEKSICETSERLVSGVVLKYGKDSREYEMTGGVRKSDRIRKATITRLKSTADLKATSKQTA
>NZ_CP040094.1|WP_174711077.1|4686117_4686438_-|DUF3040-domain-containing-protein
MTSERDRQKELQHRERTLREREVELRLREMETDIHTTDAAFHQTVKHQPDHKSWMKKLILGGKLFALGVVALVAVKIASVLAGFIIVGAMGWVSYKLFLESKKNNL
>NZ_CP040094.1|WP_174711076.1|4684019_4686101_-|dynamin-family-protein
MTNQVATDRFIQDLERVAQVRSEMSVCLSQLAETINKAELAGDYSSGKLSLERDIEDITVASKNLRQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAKKLEQEKKQAFPDVDYAIVEYPLTLLEKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNSQADLDGTGFPKFMEALNTFLTRERAIAELRQVRTLARLACNHTREAVARRIPLLDQDVNELKKRIDSVEPEFNKLTGIRDEFQKEIINTRDTQARTISESFRSYVLNLGNTFENDFLRYQPELNLFDFLSSGKREAFNIALQKAFEQYITDKSAAWTLTAEKDINTAFKELSRSAAQYGASYNQITDQITEKLTGQDVKVHTTTTAEEDNSPAWAKWAMGLLSLSKGNLAGFALAGAGFDWKNILLNYFTVIGIGGIITAVTGILLGPIGFALLGLGVGFLQADQARRELVKTAKKELVKHLPQVAHEQSQVVYSAVKECFDSYEREVGKRINDDIVSRKSELDNLVKQKQTREINRESEFNRLKSLQEDVIAQLQKIEAAYSNLLAYYS
>NZ_CP040094.1|WP_174711075.1|4681304_4683521_-|dynamin-family-protein
MQQQYEDYKDLADSLKSASALLNLERKSQLHQDIITICNHLVNPSFRIAVFGPFNHGKSTLLNAMLGNRTLPIDLIPTTGASISVKYGSDVRTRIMLVDSTEIYRSGTEILQQFAILDGNRQMRKDVASVEVFCPHPFLETGVEFLDLPGTNDRDEQDNLVREQLLSADLVIQLLDARKLMTLGERENLRDWLLDRGIKTVIFVANFLNLLEPDEQKQVQNRLLFVAESFRAELPPGFSNLYRVDALPALRARLKGDVAAANSSGLAAFETALQNIVGILQPNRGSVRLPRVQAIASQIQLSLKTKIDPLALEIKSFNDKQNSKIEIKQKAANLIYKGFATSIGELRDWLSLPKLLTKYQADAAVALAENKFKDWQTNIFKKDLNQLQLAAVKWLYQAYEFFQEERPQDLLIPFPSEPEVILPPKPNNNDDLSEPGSIAVGGGIGWLLGGPVGAAVVGSISYLLNKNIQKQDEQLAKESYHQEVAKLCITAIEDYLSSFSSQGLSILAEYERQAEKVICFEFSQEPVELTNKRESLQQLQNGFNGLLRELEKVKILSNHQFYKEIPKYTNINRKYSPQPERVKISLEKDPAVKQQQEKTAKNTRTRVESVSPPPKASPSPRPEEVEAKFRDWELNEEIVRMKAEMRTPGSQTSKQQNTTQSNKAPNQPKTQTEKDKITRAYGILGLKAYASQAEVKQAYRTLVKKWHPDLFVNQPQLLKQAQEKMHLVNDAYTILSDK
>NZ_CP040094.1|WP_174711074.1|4680494_4681193_-|DUF305-domain-containing-protein
MQLLSLRNGFLVLTFSAIASAGGLMTGCTSIASQNQSQAPKATSTNTNDKQMMNHGGGMMNHSMGMDLGPADANLDLRFIDAMIPHHQGAVEMANVAQVKSKRPEIKKLAGDIIKSQNQEITQMKQWRQAWYPKAGDKPMAYNSQMGHTMEMSSDQMKTMMMSQDLGAADTEFDLRFINAMIPHHEGAVRMAKDALSKSQRPEIKKLAQAIIKAQNTEIKQMQQWRKTWYNK
>NZ_CP040094.1|WP_174711073.1|4680152_4680395_+|hypothetical-protein
MTVNAAFWSVGCAQFSLNLLHYWTREELLNYGVQHSCSEEITQSLTSDRRCGVMLKFEDASPDLFAKLMTDAPQWTERMA
>NZ_CP040094.1|WP_174711072.1|4678768_4679902_-|S-layer-homology-domain-containing-protein
MTNKPPSEPESSQRTALGFDEFIAILVAFTTIGAILFWSLSRRDSSWNFNRLLSASSTPSPSVQPNQVLPSLNPKVEPNVVPKTVLPYSLPEAVVEPKTPSLPTNSATPSRALPSAQVIPTQPPQPQTPVPSSAVLESSIKSSALPLVTPAKQKSIIPPPIAFNDVPTNFWGRRFIDVLSSRSILKGFPDYSFRPNQPVNRAEFAAIVQKAFDQEPSKTAIAFEDVPTKFWATPAIDQAISAGFLKGYPKKTFKPQQNISRVQVLVALVSGLNLKAPTSPNQILSVYKDAKDIPAYAIGKIAAATTNGLVVNYPNPQILAPNKVASRAEVAAMIHQALVKRGKLEAISSPSIVRLPSASPETSRTPKVKLSPGGSSR
>NZ_CP040094.1|WP_012407766.1|4678098_4678533_+|CAAD-domain-containing-protein
MPEQDFTETASKETTVAEINTQTGTITKVQPPAQSQDEWLKYGEQVSTFLATLPEYVGGFFNEYKQPLVTVGLIVGSIVGVKVLLAILDALNDIPLVAPTFELIGIGYSAWFVYRYLLKASTRKELTSEITTLKSQVVGKIPEA
>NZ_CP040094.1|WP_174711071.1|4675429_4677154_-|HAMP-domain-containing-protein
MPTQKPTLIDSSSEIKKVSAEEPSTDELPTIEFPSRGKLKASSWRIHQKIGYGYFVAIGIGFFGALTGLVIANYYRGREVRQFNQAYEQGQLLSNYRDAVVGAQLHSSNLVAVLENSQQLQTKKADFLKNVEKAQQLESKISGFIDSKPKRLAATSSTLQTLLLDYKNNLKAYVDQIEAVLQKIDSQPAQPQQISAARSQLLTIMRGETAMRLDQLSESLANILQTAEDQEQERQKAVEQAKIVERFIVIISMLVSVAIAAIVAWRTSRAIAEPVITVTQVAEQVARKHNFDLRAPVTTEDEIGLLAKSLNRLIERVSERTKELQQAKELAEAASKAKSVFLANVSHELRTPLNAVIGLSQLLEDDATDLGLSADFITDLETINSAGKHLLHLINEILDLSKIEAGKMTLYPETFEIVTLINNVVLTVKPAIEKNANILEVHFDEQLGTMYADQTRMRQVLLNLLSNASKFTTNGKVTLTVNREKEELRLDAPLGMITFTVTDTGIGMSNRQQQQLFQPFTQGDTSTTKKYGGTGLGLAISRHFCQMMGGEIIVKSQPGLGSTFTIRLPMTVQD
>NZ_CP040094.1|WP_174711080.1|4692250_4692460_+|DUF433-domain-containing-protein
MESQLIQSSPDILSGTPVFYGTRVPVQTLIDYLEAGDRLDDFLEDFPTVSRAQATAFLESLCCKSKYRP
>NZ_CP040094.1|WP_174711081.1|4692427_4692622_-|DUF433-domain-containing-protein
MDWKQYIHSDPKILLGKPTVKETRLSVEFLLGLFAAGWTKQQVLENYPTLTSEALRAVFAFTAE
>NZ_CP040094.1|WP_174711082.1|4692734_4692989_+|hypothetical-protein
MQSLNITLPDAIANALSAYIGDQEVSLPANAIVENALEEFLSQRGYLPPQKQGLRLTPAPKGSGFKDTSVNHDKILAEQTFLQS
>NZ_CP040094.1|WP_174711083.1|4693232_4694207_+|cysteine-synthase-A
MDIKNGFVGAVGNTPLIRLNSFSEETGCEILAKAEFLNPGGSVKDRAALYIIEDAEKKGLLKPGGTVVEGTAGNTGIGLAHICNAKGYKCLIIIPDTQSQEKIDALIALGAEVRRVPAVPYKDPNNYVKLSGRVAAELENAIWANQFDNLANRHAHYETTGPEIWQQTDGKIDAWTAATGTAGTYAGVALYLKEQNPAVKCVVADPLGSALYSYVKTGEINIEGNSITEGIGNGRVTANMEGAPADDAIQIDDKEALRVVYQLLRKDGLLMGGSTGINVGAAVALAKQLGPGHTIVTILCDSGSRYQSRIFNPEWLASKGLSID
>NZ_CP040094.1|WP_174711084.1|4694266_4694599_+|(2Fe-2S)-ferredoxin-domain-containing-protein
MTNITQPSNFPTIDQPFSSKCVRVCQNRTCKKQGAVKVLAAFAALPIPDVTVTASSCLGQCGNGAMVLVLPDMVWYSGVQPDEVSLLIENHLLGGERVEQMLYYRFHPQQ
>NZ_CP040094.1|WP_174711085.1|4694748_4695669_+|hypothetical-protein
MNIQQLRQSLKQKWLIYYKQNIAWLVKMRIWATYDGLRRPLSGFILATLSVLEPQFDEILAFMLDLNNDPDKIVSALGLNFNPDEELRLIKSEDSEDSIDISQLESESPDEKHFEDKHLSSAVTASKIALHSLAKTLDSNLSRADRVAPSFTATTEVVRTHKPELVVAFATKIAPDTPVKTPASGFIKEYQPIRSHSTLTMTSEINSKAKTMPSVALATEVKSNPPSVRVPVGALLAITTEINSNGKPVRSLAITTEVKSNGKQVNIQPQDIKSKVNLPTTNARSLASWVDEFCYGTRNKEEDILT
>NZ_CP040094.1|WP_174711086.1|4695674_4696670_-|folate-binding-protein-YgfZ
MPTSTIDDKDTAAIQAARVGVAICDRTAWGRIKVSGDDRLNFLHNQSTNNFKILKPGQGCDTVFVTSTARTIDLVTAYVREDAVILLVSPNRRQYLMEWLDKYIFFADKVELSDITQYTNTFSLIGPGSDAVLEKLGIGELIGQPYGSHKVYTIAPAEGVRIAVGSGLAAPGYTLTFPYTDKATVWNKLLEVGAVEMSDRAWDALRILQGRPAPDSELTDDYNPLEVGLWQTISFTKGCYIGQETIARLNTYKGVKQHLLGIRLSAPASIGSAIAVGDEKVGKLTSYTETADGYFGLGYIRTKAGGVGLKVQVGESEGEVIEIPFVSHEYP
>NZ_CP040094.1|WP_174711087.1|4696877_4698461_-|PLP-dependent-aminotransferase-family-protein
MVEIVYIASIDDYLVIDECAKMNILLERQSPKPIYLQIRDRISRLIKSGALKSGDRLPSIRSLAENLQVNKLTVIEAYNVLEADGIVSARQGSGYFVSSISLKSANLESKFAPAQNVIITKPGKCSFYDMYTPLVQAQTQPGIINFGYGYPRPPKDINLIARRALRQDDTDIFFPHEMPQGQLTLCTQIAQMLVHQGLEVFPEDLIITNGSQQGLSLAMSYYVQRGDWVIVEAPTYYGAISILENLGAKIIGIPMTAEGMNLDLLEQYLHSHRPKLIYTISTFHNPTGLTTTQNHRQQLLALAEKYECPILEDNAYEGINFDAVPAPIKALDKNHLVTYLSTFSKTLMPGLRVGYMVVTGKHYQAIIERKLLHDLHTSSISQTIVSEYLASGHYRRHLSRLRTENLQSRNTMLQALERYFPEEIRWTVPTGGLFLWVQLPDNFPMGTIRKEAFAQNVYLACGSAFFPDKQGYPAMRLTFCLSPEEIEQGISIVGKLLKKHISKGSVDTEKLVVKQPISNYQPLVYSS
>NZ_CP040094.1|WP_174711088.1|4698614_4698830_+|hypothetical-protein
MNKFNFLLNLRKYWQHFVIWMASGSDLQVWHESDWRGNISAWHAYDPITGRSACFGSEEEIRIWIDKCYYR
>NZ_CP040094.1|WP_174711089.1|4699007_4700564_-|hydantoinase-B/oxoprolinase-family-protein
MYTTSQSDPVRLEIFKNLYQFIAEQMGIVLQNTATSVNIKERLDFSCAIFDSSGLLVANAPHIPVHLGSMSESVRSLINDKGDTLKPGNVYLSNNPYNGGTHLPDVTAITPIFLEIGENNPCPMPLFFVASRGHQADIGGITPGSMPPHSTTVEEEGILFDNFLLVEEGNLLETSVRQHLLNHTYPARNSDQNIADFKAQIAANKRGGQELYKMVSQYGIETVQVYMKFVQANAEESVRKAINLLKDGSFVYEMDNGATIKVKVTIHQESRSATIDFTGTSEQLNSNFNAPKAVTQAAVLYVFRTLVDDNIPLNAGCLNPLEIIIPVGCMLNPTYPAAVVAGNVETSQTIVDALYGALGVMAASQGTMNNFTFGNEQYQYYETICGGSGAGIDFDGTDGVHSHMTNSRLTDPEVLETRYPVLLESFSLRPDSGGKGKYSGGNGVVRRIRFLEPMTANILSGHRVIPPFGLNGGETGIVGRNWIQRQNGIEENLDSTATVEMKPGDVFVIETPGGGGFG

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Crispr_ID: NZ_CP040094_22

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040094_22

4756385-4756495

Orphan

N:A

Consensus_repeat	Method
ATTTCTTGCAAATGTATAATCAGTTGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040094_22

>merge|NZ_CP040094|22|4756385-4756495|CRISPRCasFinder
ATTTCTTGCAAATGTATAATCAGTTGCCGCAAACGCTTAATACTTTGCAACAAATACTCTTCCATATATAAGAAACGCTTAAGCATTTCTTGCAAAGGTATAATCAGTTGC

>NZ_CP040094|22|21|4756385-4756495|CRISPRCasFinder
ATTTCTTGCAAATGTATAATCAGTTGC	CGCAAACGCTTAATACTTTGCAACAAATACTCTTCCATATATAAGAAACGCTTAAGC
ATTTCTTGCAAAGGTATAATCAGTTGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040094.1\|WP_174711128.1\|4762849_4763083_+\|type-II-toxin-antitoxin-system-HicA-family-toxin	unknown	unknown	gnl\|CDD\|224638
NZ_CP040094.1\|WP_174711130.1\|4764515_4765631_-\|DNA-protecting-protein-DprA	unknown	unknown	gnl\|CDD\|223829
NZ_CP040094.1\|WP_174711117.1\|4743147_4744824_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|227121
NZ_CP040094.1\|WP_174713715.1\|4741060_4742410_+\|cytochrome-P450	unknown	unknown	gnl\|CDD\|225035
NZ_CP040094.1\|WP_174711121.1\|4753455_4754196_+\|RNA-methyltransferase	unknown	unknown	gnl\|CDD\|223639
NZ_CP040094.1\|WP_174711127.1\|4762634_4762853_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|224514
NZ_CP040094.1\|WP_174711123.1\|4756956_4760283_+\|type-I-restriction-modification-system-endonuclease	unknown	unknown	gnl\|CDD\|236912
NZ_CP040094.1\|WP_174711116.1\|4742535_4743120_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174711120.1\|4752367_4753282_-\|homoserine-kinase	unknown	unknown	gnl\|CDD\|234920
NZ_CP040094.1\|WP_174711119.1\|4751814_4752324_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174711115.1\|4739120_4741013_+\|lipoxygenase	unknown	unknown	gnl\|CDD\|366014
NZ_CP040094.1\|WP_174711124.1\|4760455_4761925_+\|N-6-DNA-methylase	unknown	unknown	gnl\|CDD\|280533
NZ_CP040094.1\|WP_174711131.1\|4765832_4766969_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|369248
NZ_CP040094.1\|WP_174711126.1\|4762316_4762628_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
NZ_CP040094.1\|WP_174711122.1\|4754567_4756133_+\|serine-hydrolase	unknown	unknown	gnl\|CDD\|379138
NZ_CP040094.1\|WP_174711132.1\|4767076_4767766_-\|YdcF-family-protein	unknown	unknown	gnl\|CDD\|376902
NZ_CP040094.1\|WP_174713716.1\|4749269_4751732_+\|S-layer-family-protein	unknown	unknown	gnl\|CDD\|368641
NZ_CP040094.1\|WP_174711129.1\|4763088_4764489_+\|restriction-endonuclease-subunit-S	unknown	unknown	gnl\|CDD\|341171
NZ_CP040094.1\|WP_174711118.1\|4745500_4747945_+\|S-layer-family-protein	unknown	unknown	gnl\|CDD\|368641
NZ_CP040094.1\|WP_174711125.1\|4762065_4762320_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP040094.1\|WP_174711128.1\|4762849_4763083_+\|type-II-toxin-antitoxin-system-HicA-family-toxin	gnl\|CDD\|224638	COG1724, COG1724, Predicted RNA binding protein (dsRBD-like fold), HicA family [General function prediction only].	1.67834e-25
NZ_CP040094.1\|WP_174711130.1\|4764515_4765631_-\|DNA-protecting-protein-DprA	gnl\|CDD\|223829	COG0758, Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion].	5.63352e-132
NZ_CP040094.1\|WP_174711117.1\|4743147_4744824_+\|alpha/beta-hydrolase	gnl\|CDD\|227121	COG4782, COG4782, Uncharacterized protein conserved in bacteria [Function unknown].	0.00191497
NZ_CP040094.1\|WP_174713715.1\|4741060_4742410_+\|cytochrome-P450	gnl\|CDD\|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	4.95885e-19
NZ_CP040094.1\|WP_174711121.1\|4753455_4754196_+\|RNA-methyltransferase	gnl\|CDD\|223639	COG0565, LasT, rRNA methylase [Translation, ribosomal structure and biogenesis].	3.53216e-93
NZ_CP040094.1\|WP_174711127.1\|4762634_4762853_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|224514	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	1.72597e-10
NZ_CP040094.1\|WP_174711123.1\|4756956_4760283_+\|type-I-restriction-modification-system-endonuclease	gnl\|CDD\|236912	PRK11448, hsdR, type I restriction enzyme EcoKI subunit R; Provisional.	0
NZ_CP040094.1\|WP_174711129.1\|4763088_4764489_+\|restriction-endonuclease-subunit-S	gnl\|CDD\|341171	cd17282, RMtype1_S_Eco16444ORF1681_TRD1-CR1_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Escherichia coli G4/9 S subunit (S.Eco16444ORF1681P) TRD1-CR1 and Zobellia galactanivorans DsiJT S subunit (S.ZgaJTORF2697P)TRD2-CR2. The recognition sequences of Escherichia coli G4/9 S subunit (S.Eco16444ORF1681P) and Zobellia galactanivorans DsiJT S subunit (S.ZgaJTORF2697P) are undetermined. The restriction-modification (RM) system S subunit consists of two variable target recognition domains (TRD1 and 2) and two conserved regions (CR1 and CR2) which separate the TRDs. The TRDs each bind to different specific sequences in the DNA. RM systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The host genome is protected from cleavage by methylation of specific nucleotides in the target sites. In type I systems, both restriction and modification activities are present in one heteromeric enzyme complex composed of one DNA specificity (S) subunit (this family), two modification (M) subunits and two restriction (R) subunits. This model contains both TRD1-CR1 and TRD2-CR2. It also includes TRD-CR-like sequence-recognition domains of various putative type II restriction enzymes and methyltransferases and may also include type I DNA methyltransferases.	1.63308e-95
NZ_CP040094.1\|WP_174711120.1\|4752367_4753282_-\|homoserine-kinase	gnl\|CDD\|234920	PRK01212, PRK01212, homoserine kinase; Provisional.	1.83459e-137
NZ_CP040094.1\|WP_174711115.1\|4739120_4741013_+\|lipoxygenase	gnl\|CDD\|366014	pfam00305, Lipoxygenase, Lipoxygenase.	1.86044e-58
NZ_CP040094.1\|WP_174711131.1\|4765832_4766969_+\|alpha/beta-hydrolase	gnl\|CDD\|369248	pfam07176, DUF1400, Alpha/beta hydrolase of unknown function (DUF1400). This family contains a number of hypothetical proteins of unknown function that seem to be specific to cyanobacteria. Members of this family have an alpha/beta hydrolase fold.	8.71205e-41
NZ_CP040094.1\|WP_174711126.1\|4762316_4762628_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	3.84142e-17
NZ_CP040094.1\|WP_174711122.1\|4754567_4756133_+\|serine-hydrolase	gnl\|CDD\|379138	pfam13354, Beta-lactamase2, Beta-lactamase enzyme family. This family is closely related to Beta-lactamase, pfam00144, the serine beta-lactamase-like superfamily, which contains the distantly related pfam00905 and PF00768 D-alanyl-D-alanine carboxypeptidase.	1.33693e-72
NZ_CP040094.1\|WP_174711132.1\|4767076_4767766_-\|YdcF-family-protein	gnl\|CDD\|376902	pfam02698, DUF218, DUF218 domain. This large family of proteins contains several highly conserved charged amino acids, suggesting this may be an enzymatic domain (Bateman A pers. obs). The family includes SanA, which is involved in Vancomycin resistance. This protein may be involved in murein synthesis.	0.00190233
NZ_CP040094.1\|WP_174711124.1\|4760455_4761925_+\|N-6-DNA-methylase	gnl\|CDD\|280533	pfam02384, N6_Mtase, N-6 DNA Methylase. Restriction-modification (R-M) systems protect a bacterial cell against invasion of foreign DNA by endonucleolytic cleavage of DNA that lacks a site specific modification. The R-M system is a complex containing three polypeptides: M (this family), S (pfam01420), and R. This family consists of N-6 adenine-specific DNA methylase EC:2.1.1.72 from Type I and Type IC restriction systems. These methylases have the same sequence specificity as their corresponding restriction enzymes.	3.97273e-91
NZ_CP040094.1\|WP_174713716.1\|4749269_4751732_+\|S-layer-family-protein	gnl\|CDD\|368641	pfam05860, Haemagg_act, haemagglutination activity domain. This domain is suggested to be a carbohydrate- dependent haemagglutination activity site. It is found in a range of haemagglutinins and haemolysins.	2.59774e-24
NZ_CP040094.1\|WP_174711118.1\|4745500_4747945_+\|S-layer-family-protein	gnl\|CDD\|368641	pfam05860, Haemagg_act, haemagglutination activity domain. This domain is suggested to be a carbohydrate- dependent haemagglutination activity site. It is found in a range of haemagglutinins and haemolysins.	7.59682e-27

>NZ_CP040094.1|WP_174711122.1|4754567_4756133_+|serine-hydrolase
MSESSDELTAFSRRQPLNRRQRPQKVQKVAQKKVKANSQQQAANGREAALARQKNRVAPPPTPGTTRRVKSGLVMPMAVKPIPTVKGKIPPFRPGAVMVKTVRMEKPKRGLRSSRKTRLKPMAKTILYVVRLLIVGVGMGAIVGTVLSVLDPANRISTTSAPQSNSNVSRSQPQPTQAPPTASSSLYLSQEIISLKNAVQNLAANNPNLSPGVFLVDLDTGNYVDVNGSTSFPAASTIKVPILLAFFQDVDAGKIRLDEMLTMQQDMVAGGSGDMGSKPAGTKYNALEVVTKMITISDNTATNMLIARLGGMEALNQRFRTWGLTTTTIRNSLPDLQGTNTTSPKELANLMAIVSQGNLVSMPSRDLMLDILRRTQRDTLLPSGLGTGARAFHKTGDIGTMLADTGLIVVPTGKRYIATVMVQRPENDPRAEKLISSISRAAYQEFSQNAVTPNSTTSTIPANGYQPQIGSPALPNSTTGTVPMSGYQPPVVSPVPNDMGSTVPANGYQSPVMNQQYYPQR
>NZ_CP040094.1|WP_174711121.1|4753455_4754196_+|RNA-methyltransferase
MGLAGLRIVLVEPAGPINIGAIARVMKNFGLYNLVLVNPQCDPLSTEALMMAVHAQEIIESAELVATLPEALHGCVRAIATTGRVRSLETPLENPRTALPWLLEEPEKPTALIFGREDRGLSNEELNYAQRFVGIPTSKDYVALNLATAVAICCYELSQSAQQFDTQTITQTELAPLDVLEGYYQQLESLLLKIGYVYPHTAASRMGKFRQLYNRAHLKTREVAMLRGILQQVEWALKNQRDSENL
>NZ_CP040094.1|WP_174711120.1|4752367_4753282_-|homoserine-kinase
MSVVSTITVTVPATTANLGPGFDCIGAALKLYNEFKFTRLEEGGLIIHVTGTEAERVQTDESNLLYQAFVKFYQHIEQTPPTVKIEIKLGVPLARGLGSSATAIVGGLVAANQLEGATLSQSQVMELAIAMEGHPDNVVPALLGGCRLAATSGTAWEICDVPWHKDVVPVVAIPNFELSTSEARGVLPTEVSRADAIFNTAHLGLLLRGLETGNGQWLKTALQDKLHQPYRKALIPGYDALNIAAVSAGAYGMVISGAGPTLLALADKLHSEAVEAAMLAAWQEEGITAEVRSLSLDTQGAKSF
>NZ_CP040094.1|WP_174711119.1|4751814_4752324_-|hypothetical-protein
MEQIQAEMAALNSQIEILLEERAALTINNVISSDNDSPQAMVEAYRRQARENAQLSVELQGIDAAIAALEVQIKQKQNKLVRWQVESKQLTQQQQLEEAKEVAQVHAQRINQLAGELAAEVRFLKACANELSPMYWQIYYKPFITGFKTISVPYVRSDLEVWTIVNRII
>NZ_CP040094.1|WP_174713716.1|4749269_4751732_+|S-layer-family-protein
MSVTSAWLGLISGILTGAMWSGLANAQVTPDGTLNTTVFQNGNNFTITNGNRVGNNLFHSFSQFSIPSKGSAFFNNTLDIQNIFSRVTGGNISSIDGLIKANGSANFFLLNPTGIMFGLNAKLDIGGSFLGSTASSIRFADGVEYSVANPTTSPLLTMSVPIGLQMGNNPGAINIQNTGHRLVFPINPFASSPDRSNNPVGLGVNPGNTLALIGGDITLDGGVLNTPSGHIELSSVRNGTVNLNTSSPRWSFDYGNLQTFGNIYLSHQSLTDASGTPAGSIHFQGQKISFNDASAALLVNQGSQNSGDINVNASESLELGGLGTDGFPQSLLRADNFGDGAGGNIVVSASQVFLHDGGSFHGFNFGKGLGSNISVEIEDLLQIVGLSPISGFASSLNTNTSNSGKGGDIRVVTNKLQVLDGAVIGNSSLGNGIGGNTTINATDFIEVIGENPQNLADSVIVVGTFSQANAGQLTINTSKLRVRDGGGIVASTVNSGNGGDLLINASDTVEVSGVGSISRLPSRIGARAELLAPPIRQLFRLPDVITGNIGKLVVNTPRLQITDGAIVGVDHQGVGDAGKLEINAHSIRLDNGGSVTAATAQGEGGNIFVQANDLILRRGSSIVTNAGGIGNGGNITINSPIIVGLENSDIIANAVVGKGGNINIATKGIFGLEYRLQLTPENDITASSQFGVNGTVQINNIGVDPNSGLVELPENVTDQSQQIASGCSANQGSTFVATGRGGIPQNPTQEIGSDRTWSDIRDISAYRKTQPVEAQIPPSSEVLVQATSWHRNADGKIELITDKSPVQVQQALNCAAVPKS
>NZ_CP040094.1|WP_174711118.1|4745500_4747945_+|S-layer-family-protein
MTTNSIWLGLCIGIVPLMVMPVSAQIIPDSTLNTTVSQSGDNFTIINGNRVGNNLFHSFSQFSVPSNGSAFFNNAADIQNIFSRVTGGSVSNIDGLIKANGGANLFLLNPSGIIFGANAQLNIGGSFIGTTAESIKFSDGAEFSAISPQANPLLSINVPIGLQMGSNPSSIQVQGTGHTLTITSNLAPLIRTPSPTELQVQPGKTLALVGGNLNLNGATLNAETGQIELGSLGGSGLVTLVPNTQGYTLGYENGQSFGDIQLAHKSLLNVSGVNAGSVQIQGRKIKLTDGSLVLTTNLGNLPSGNIHLQASEAIDIIGTTADAKIRSGIRSEILGRGTGANISIITPQLRLQQGAGLNNTAFAVADSGKIQIEASTIELSGSSSLNPTGVTSITTTARGTATAGDISINSDRLLVSDGAALSSVAFGNGSSGQVSIHNSDTIIRGDNPAGLYSNISALTYGTGSAKTLTLDTARLQVLDGGVVAGTSFFIGNGGDIRINATESIQISGRSRLNQSSINSSVLKSEPLIRKLFSLPDILTANAGNVSVTTPNLILQNGGTLSVTNQGSGNGGNLNITADRIQLKNQGLIQAQTESGNGGNISLQVEKFLLIRDRSQITATAGGSGDGGNININVPIVAGLENSDIIANAVKGRGGNIQIATQGIIGLQYRPQITGENDITASSQFGVSGTVQINHIGVDPNSGLVELPANVTDPSQQIASACSANQGSRFVATGRGGIPQNPNQDVTSDRTWSDIRDISAYRKTGEITTQTPASSELFVQATGWHRNTQGKIELVANKSSVQVQQSLSTCAAMPN
>NZ_CP040094.1|WP_174711117.1|4743147_4744824_+|alpha/beta-hydrolase
MNYCDNQNLPDNQPYKIYEFKKTNQEKIPGYLVVSTAKLNVETEENNSNRYLSLVVNKKLFNINDGQAEPSTQDMIEKIAKILESSPEPEIIINIHGYSSTPSDTETGCKKIYEYINTSIQQPNKYIFIGYRWPSENPTKMDESGSFGQKLINALSSLPTLLAINLALGLTISIWSAIALLFLNILSNSAVHFFTTMLILSGIVSAIIFTLIILRLSTYFRDTYRATNYGVTDLVELIRQLDYTVKLPRNKRIKLSFISHSMGCFVVTNVIRILSDVFDVKSINKKPDSDIGNVFRLGRLVLVAPDIPVESIFPGRANFLRSSLRRCEEAYIFCNEGDLALRFTSTAANYFSFPARTRISGYRLGNITVKHFKDKNDLVGHAPRYGVVNLHKQDYGKGYRLDNPYKYLEIRSSSSEHRKIEEITKMSEDWVQPADLFTYFDCTDYKDDRMDQIGIVSSAIQKPAINVGNYILLTLAFIRKSINNRDPQGIDTHTGYFGGGFSQKAIYELAFLGFQGFLRSLSIEGDESEQISVFSQRCQEKQIQVILAPQIYQQKTQR
>NZ_CP040094.1|WP_174711116.1|4742535_4743120_+|hypothetical-protein
MAELIEKKQLDNIATWMIQIKETNLPSILKGVFFMDGNPLPDTCITMYNLEWDTQTRTLVLPIFSPLQWTFHNSIAGWILLRLIQWFQVTYKIQFEDETLQQAQIIPILLGIPISTLIVSCTMSQDKNSLNGDIWHRKNVWFGGLSRAGEYTLRKVVDKDGCYTPAFNDMLSRVKNECLVIVHHSNQQKAITIS
>NZ_CP040094.1|WP_174713715.1|4741060_4742410_+|cytochrome-P450
MTLKDKVLKGHDRQLWLAPILAKVGYDTAIGKFLRLIFYYTDALIILKAWRDFLYIRKDNIGDKYFAVDQAIMHSSHSQVRELMQTQPQLRGNDLGIIRILAPNYLLDNPLSLGTNGNEHTGIRSVILQALPEPSQKIDFLGNIVEQSLLEAAKQGKLHIGNDLPKIMLSVLHQLVFQISLSEEEITASDSYIKGLALASLPNFINKYLLAILTAPKIRHRQYLTKRYKQSAKWASYFETGAQYQLNEHQIANTLFDMIHIAGTAGTSALLGSVIGVLCLDNALRNDVVSEVNAAWNGKKTLDPDALEQLTLLNQVILETARLYPPVRFVSQLTTEGGEVEIGEQKCPFQKGTRLLGSIFTANRDTNRYQNPDDFDLTRNFSDILSWNGEGHERACPGKSLSIGFIKIFCLHLFQNYQWDSITEVKWDFEKVTAVTPNNLVLQGFAQRM
>NZ_CP040094.1|WP_174711115.1|4739120_4741013_+|lipoxygenase
MTALSPDHSISSSSTHTLDIARQEYQYNYNHIPSIAMVDQLSIAEEFTTNWYFLLAQQLRVIFINTLIVNRGNQDSKSIRDDVERFILEAFLKGAVPARISILARILQIVPQLLLKGISKDFRELDELFHSILKENGLVILRDALNRIINLLYEGQPTGHVSSLKDYEDLFPVISLPAIAKTYQEDEVFAYMRVAGYNPVMIERVTTLSDRFPVTDEHYQAVMGTDDSLAAAGLEGRLYLADYKILDGAINGTFPHEQKYLYAPLALFTLPKGSDPTRLLRPIAIQCGQTPSPDYPIVTPDSGKYAWLFAKTVVQIADANYHEAVTHLARTHLLVGVFAIATARQLPLTHPLRILLRPHFDSTLAINDAAQRTLIAPGGGVDRLLSASIDNSRVLAVLGLQSYGFNSAILPKQFQQRGVDDPNLLPVYPYRDDALLVWDAIHQWVWDYLNLYYTTDEDIHQDTALQAWAAEILAYDGGRIPDFGEDGGIKTLNYLIDATTLIIFTASAQHAAVNFPQKDLMSYAAAIPMAGYLPASTLKREVTEQDYLNLLPPLDQAQRQYNLLSLLGSVYYNKLGEYEQRYFTDQKIKPLLQAFQSNLQQVEDTIKQRNFYRPPYEYLLPSKIPQSINI
>NZ_CP040094.1|WP_174711123.1|4756956_4760283_+|type-I-restriction-modification-system-endonuclease
MPSLNFSFLAVHDTQLVRLGALAERYFADDPNTCLIKLRQFGELLAQLAAANIGLYEVADERQINLLNRLRDRGLIKGEVDRLFHELRKIGNQATHELSGNHRTALSGLKYARELGIWFHRSFSGNRNFDPGAFIPPPDPKIETQALKAELERLRDEVQKNFSEAEAAQALVAAETLRRSASEDLAREAELKVEEVLNHLAEIQAQAKSETQQTIQQTITQAQVAESGVLLDERETRRLIDAQLRAAGWEADSEELTYQNGVRPQKGKNLAIAEYPTVNGRADYALFCGLQIVGVVEAKRQSKDVSEGALNQAKRYSEGFQITGEMFAGGLWQNYQVPFVFATNGRPYLQQLQTKSGIWFCDLRRATNLRVCLPTWHSPQGLLDILTQDVDQAVTRLAQEGFSYGLKLRDYQIRSIQAVESALARGQRELLVAMATGTGKTKTCIGLVYRLLKTKRFRRVLFLVDRTALKEQTTNAFKDSRMENLQSFADIFEISDRNNTEFDRDLKVHVTTVQGMVKQVLYPADGTIVTPDQYDCIVIDECHRGYLLDRDLSDTELEFRDFNDYVSKYRRVLEQFDAVKIGLTATPALHTTEIFGNPVYTYSYREAVIDGWLIDHEPPFQIKTKLSEEGMVWNPGQQMEFFNPQTGQLDLVHAPDEVRIDIEQFNRKVVTEEFNRVVCEALAEHIDPSLAEKTLIFCATDAHADIVVNQLKQTFQDRYDSVEDDAVVKITGNADKPLELIRKFRNEVNPKVAVTVDLLTTGIDVPAICNLVFIRRVNSRILYEQMLGRATRLCDEIGKEVFHIFDAVRLYEVIAPVSTMRPIVVNPNITFTQLLQELETVNTDAVEIVIEQLLAKLQRQRRHLSDSNREQLEAIAQMPIENIGSHLKQSTIQQVREWFREKKTIAQILDRRDGGTQPILISHHLDELVSIERGYGSAARPEDYLESFRAFLLENMNKIPALIVVTQRPRELTRAQLKELRMQLDAAGYSQTSLQTAWRETTNEDIAASIIGFIRQAALGDALIPYSERVEGAMKKILASQPWNTPQRKWLERIGKQLKAEIIVDCEAFERGEFKSQGGGFERLNKVFGGELENIVIKIHESLWDVAI
>NZ_CP040094.1|WP_174711124.1|4760455_4761925_+|N-6-DNA-methylase
MTATTDIVQKLWNLCHVLRDDGVTYLQYVTELTYLLFLKMAQETGAEAQLLQGYRWDDLVTQDGVEQLTSYRKLLLMLGSENSSLRVQAIFANAQTSLKQPRILKKLVTSIDELDWFSEHRDEFGDLYEGLLQKNADEKKSGAGQYFTPRPLIDCMVSLLKPQPGELIQDPAAGTGGFLIASDRYIRQYHDPFEWTEAQQSFQQHQAFYGMELVQDAHRLLLMNMMLHGIEGAVDLGDSLSAEGQRLAKADVILTNPPFGTKKGGGLPSRDDFTYPTSNKQLAFLQHIYRTLKPGGRAAVVLPDNVLFEDGQGRAIRADLMAKCNLHTILRLPTGIFYAQGVKTNVLFFQRGTTEKGNTKAVWIYDMRTNMPSFGKRIPLTRGHFSEFEQCYGNDPNGNSPRVDLEENGRFRCFTREQITKRNENLDISWLRDDSLRSGDNLPEPEIIAAEIMEKLRIATKEMEALMILLEGEEAAEAVSASVGMPTLE
>NZ_CP040094.1|WP_174711125.1|4762065_4762320_+|hypothetical-protein
MTIEQAIVEKLRILPPEKQQEVLAFVEFLQTDEWEKVYQGRFKELQQEIQIGIEAAERGEVVDAEEVFQRLRRKLQQKRAQAGQ
>NZ_CP040094.1|WP_174711126.1|4762316_4762628_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MSNICRFTILASRDIETIIDYIADNSSFDAADRLLAKINNKCERLANFSGMGRRRDELAPNMRSFPVDDYLIFYRPIDEGVEILRVVSGYQNLKDLFSEQDEI
>NZ_CP040094.1|WP_174711127.1|4762634_4762853_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MKTFTAYVEYDSVTKLYVGIVPGIPGAHTQAESLDELQENLKEVIELCLAEYGNDLDELPRFVGIQQIEVSA
>NZ_CP040094.1|WP_174711128.1|4762849_4763083_+|type-II-toxin-antitoxin-system-HicA-family-toxin
MSKLPIVNYQTMEKLLLNLGFEAVRQKGSHVFYRHPDGRTTTVPHHKGRDIARPLIREILREIELSPEEFVQELESL
>NZ_CP040094.1|WP_174711129.1|4763088_4764489_+|restriction-endonuclease-subunit-S
MNDELIELPDGWCCVMLNDLGELKRGKSKHRPRNDPKLYGNFVPFIQTGEVARSKGRILKFSKMYSEFGVQQSRIFPQGTICITIAANIADTGILGFDACFPDSIVGLITEDKLADPYFIEYFLRTIREDLAQFAPATAQANINIEILNKVVVPLPPLNEQKRIVAKIEELNDRTQRAKEALETIPQLCDRFRQSVLAAAFRGDLTADWREQNPDVEWKELTLGDVIKNKPRNGYSPKPVDYPTKVKSLTLTATTSGTFKPKHFKYIDEDIEPTSHLWLTPGDILIQRSNTLDYVGTSAIYDGNLREFIYPDLMMKIQVIEEKVKIELIHYLLSSQATKEYFKNNATGTAGNMPKINQQIVMNTPVFIPPIEEQKEIVSLIQQCFTAIDCIQQQYQKAKTNLDQLNQSILAKAFQGELVPQDPDDEPASVLLERIRAEREKLNNGKQKSQRTSKRKSKTVEEQGVT
>NZ_CP040094.1|WP_174711130.1|4764515_4765631_-|DNA-protecting-protein-DprA
MVEEGAYWIAWAQISGIGPVLLRRLQQHFGTLATAWNATKVELGEVEGFGFQTLEKVVQQRSRLHPEQLFTKHQQENSHFWTPADADYPRLLLETPSPPPILYYRGEVELQENLGQKPMVGIVGTRQPSEYGIRWTRQISTALAKNGFTVVSGMAEGIDTESHIAAMKAGGRTIAVLGTGVDVIYPHKNRDLYKQILTAGLVVSEYPTKTPPDRTHFPRRNRIIAGLSRAILVMEAPLKSGALITATYANEFGRDVYALPGRVDDHPSQGCLKLLSQGASFILKELDELLTMLGAIPQIDAVEASTAPEQLMPTLSPELQRVMDAFTSDALPFDFIVQQSSMAAGSVSGALLQLELMGLVSQLPGMRYQKS
>NZ_CP040094.1|WP_174711131.1|4765832_4766969_+|alpha/beta-hydrolase
MKYFYRLLISLSGCLIFLLVHSGLGLLPSLAAEKVTVRYGLFEQSIPVADIRNYGEKQKASSDLQSFLDYLSAKEKEKFQEALQVKMSLDIVALDKLVNTGMGKQILSFASGAIARRDQASTQALRSAIIIGAKSPEGLGLISFLEAYPSNQLVVDVSKISKLVGLANSSSNSADAPPKDNVSSSAFGKIALQYQILAAQDKQFSGCLFGDSISAGLGNTLGSGTFNFGLNGLSTISLLEQLKSLIPTKVKCEKAIIAVGGNDAWYGISDELFSKNLQEAIALVRTMGNKEIFLIPAFYSTVAASLDPTLSAPLPKVEQINVLINQVAEKEKVPVAAAGLAPLYENNVLKDNLTSDGDHLNAEGLKIYRQALLQILKK
>NZ_CP040094.1|WP_174711132.1|4767076_4767766_-|YdcF-family-protein
MQAKNRRRKNFPKIKLIKRQEMWTLTAQGWAIAIALIAYLIFFAITHVHSFLAVTSPIKSAEVLVVEGWLPDYAIQQALTEFKNGSYNLVITTGGSIEKGNYLSEYKSFAEVSAATFEKLGLESEKVVAVPTPTVIKDRSYASAVEFYRWLSDSNLKLQSINVFSLDVHTRRSWLLFRKILTPKVQVGAIAAKTHDYDPNKWWVSSQGVRTILDEGIAYIYARFLNWKA

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Crispr_ID: NZ_CP040094_24

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040094_24

5028381-5028493

Orphan

N:A

Consensus_repeat	Method
GACATCATTGATGGTGGAGAAGGCAACGATAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040094_24

>merge|NZ_CP040094|24|5028381-5028493|CRISPRCasFinder
GACCTAATTGATGGTAGAGGTGGCAATGACCTGATTGATGGTGGAGATGGCAATGACACATTGATAGGTGGTGATGGCGATGACACCTTTAAGGGTGGTCAGGGTAACGACAA

>NZ_CP040094|24|23|5028381-5028493|CRISPRCasFinder
GACCTAATTGATGGTAGAGGTGGCAATGACCT	GATTGATGGTGGAGATGGCAATGACACATTGATAGGTGGTGATGGCGAT
GACACCTTTAAGGGTGGTCAGGGTAACGACAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040094.1\|WP_174708137.1\|5034158_5035181_+\|IS4-family-transposase	unknown	unknown	gnl\|CDD\|376573
NZ_CP040094.1\|WP_174711288.1\|5031165_5031972_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174711291.1\|5036529_5037975_-\|deoxyribodipyrimidine-photo-lyase,-8-HDF-type	unknown	unknown	gnl\|CDD\|274644
NZ_CP040094.1\|WP_174711290.1\|5035387_5036365_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174711294.1\|5044622_5045525_+\|uroporphyrinogen-III-synthase	unknown	unknown	gnl\|CDD\|224503
NZ_CP040094.1\|WP_174711277.1\|5007951_5008950_-\|DUF1350-family-protein	unknown	unknown	gnl\|CDD\|115718
NZ_CP040094.1\|WP_174711295.1\|5045628_5045928_+\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|273926
NZ_CP040094.1\|WP_174711293.1\|5043188_5044577_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174711286.1\|5025284_5026949_+\|mechanosensitive-ion-channel-family-protein	unknown	unknown	gnl\|CDD\|223740
NZ_CP040094.1\|WP_174711292.1\|5038167_5038320_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174711279.1\|5011749_5013021_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340830
NZ_CP040094.1\|WP_174711282.1\|5015306_5020643_+\|ribosome-assembly-protein-4	unknown	unknown	gnl\|CDD\|238121
NZ_CP040094.1\|WP_174711289.1\|5032886_5034065_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340888
NZ_CP040094.1\|WP_174711284.1\|5022501_5023491_-\|D-alanine--D-alanine-ligase	unknown	unknown	gnl\|CDD\|234948
NZ_CP040094.1\|WP_174711283.1\|5020864_5022226_+\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240536
NZ_CP040094.1\|WP_174708137.1\|5046170_5047193_+\|IS4-family-transposase	unknown	unknown	gnl\|CDD\|376573
NZ_CP040094.1\|WP_174711280.1\|5013125_5013323_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174711285.1\|5023496_5024651_-\|KamA-family-radical-SAM-protein	unknown	unknown	gnl\|CDD\|163532
NZ_CP040094.1\|WP_174711278.1\|5009291_5011130_+\|alkaline-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366747
NZ_CP040094.1\|WP_174711281.1\|5013878_5015231_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|377105

Protein	Function_ID	Function_description	E-value
NZ_CP040094.1\|WP_174708137.1\|5034158_5035181_+\|IS4-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	1.97298e-17
NZ_CP040094.1\|WP_174711291.1\|5036529_5037975_-\|deoxyribodipyrimidine-photo-lyase,-8-HDF-type	gnl\|CDD\|274644	TIGR03556, photolyase_8HDF, deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP040094.1\|WP_174711294.1\|5044622_5045525_+\|uroporphyrinogen-III-synthase	gnl\|CDD\|224503	COG1587, HemD, Uroporphyrinogen-III synthase [Coenzyme metabolism].	3.96239e-47
NZ_CP040094.1\|WP_174711277.1\|5007951_5008950_-\|DUF1350-family-protein	gnl\|CDD\|115718	pfam07082, DUF1350, Protein of unknown function (DUF1350). This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.	7.00261e-14
NZ_CP040094.1\|WP_174711295.1\|5045628_5045928_+\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	gnl\|CDD\|273926	TIGR02008, Ferredoxin_root_R-B1, ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.	1.50993e-46
NZ_CP040094.1\|WP_174711286.1\|5025284_5026949_+\|mechanosensitive-ion-channel-family-protein	gnl\|CDD\|223740	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	1.1941e-24
NZ_CP040094.1\|WP_174711279.1\|5011749_5013021_+\|glycosyltransferase	gnl\|CDD\|340830	cd03800, GT4_sucrose_synthase, sucrose-phosphate synthase and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.	2.32178e-150
NZ_CP040094.1\|WP_174711282.1\|5015306_5020643_+\|ribosome-assembly-protein-4	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	1.04242e-119
NZ_CP040094.1\|WP_174711281.1\|5013878_5015231_+\|AAA-family-ATPase	gnl\|CDD\|377105	pfam03709, OKR_DC_1_N, Orn/Lys/Arg decarboxylase, N-terminal domain. This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure.	0.00342872
NZ_CP040094.1\|WP_174711284.1\|5022501_5023491_-\|D-alanine--D-alanine-ligase	gnl\|CDD\|234948	PRK01372, ddl, D-alanine--D-alanine ligase; Reviewed.	9.87107e-52
NZ_CP040094.1\|WP_174711283.1\|5020864_5022226_+\|MATE-family-efflux-transporter	gnl\|CDD\|240536	cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Vibrio cholerae NorM and functions most likely as a multidrug efflux pump, removing xenobiotics from the interior of the cell. The pump utilizes a cation gradient across the membrane to facilitate the export process. NorM appears to bind monovalent cations in an outward-facing conformation and may subsequently cycle through an inward-facing and outward-facing conformation to capture and release its substrate.	3.78169e-131
NZ_CP040094.1\|WP_174708137.1\|5046170_5047193_+\|IS4-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	1.97298e-17
NZ_CP040094.1\|WP_174711285.1\|5023496_5024651_-\|KamA-family-radical-SAM-protein	gnl\|CDD\|163532	TIGR03820, lys_2_3_AblA, lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.	1.67141e-158
NZ_CP040094.1\|WP_174711278.1\|5009291_5011130_+\|alkaline-phosphatase-family-protein	gnl\|CDD\|366747	pfam01663, Phosphodiest, Type I phosphodiesterase / nucleotide pyrophosphatase. This family consists of phosphodiesterases, including human plasma-cell membrane glycoprotein PC-1 / alkaline phosphodiesterase i / nucleotide pyrophosphatase (nppase). These enzymes catalyze the cleavage of phosphodiester and phosphosulfate bonds in NAD, deoxynucleotides and nucleotide sugars. Also in this family is ATX an autotaxin, tumor cell motility-stimulating protein which exhibits type I phosphodiesterases activity. The alignment encompasses the active site. Also present with in this family is 60-kDa Ca2+-ATPase form F. odoratum.	1.01782e-27
NZ_CP040094.1\|WP_174711289.1\|5032886_5034065_+\|MFS-transporter	gnl\|CDD\|340888	cd17330, MFS_SLC46_TetA_like, Eukaryotic Solute carrier 46 (SLC46) family, Bacterial Tetracycline resistance proteins, and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of the eukaryotic proteins MFSD9, MFSD10, MFSD14, and SLC46 family proteins, as well as bacterial multidrug resistance (MDR) transporters such as tetracycline resistance protein TetA and multidrug resistance protein MdtG. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. TetA proteins confer resistance to tetracycline while MdtG confers resistance to fosfomycin and deoxycholate. The Solute carrier 46 (SLC46) family is composed of three vertebrate members (SLC46A1, SLC46A2, and SLC46A3), the best-studied of which is SLC46A1, which functions both as an intestinal proton-coupled high-affinity folate transporter involved in the absorption of folates and as an intestinal heme transporter which mediates heme uptake. MFSD10 facilitates the uptake of organic anions such as some non-steroidal anti-inflammatory drugs (NSAIDs) and confers resistance to such NSAIDs. The SLC46/TetA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.25423e-85

>NZ_CP040094.1|WP_174711286.1|5025284_5026949_+|mechanosensitive-ion-channel-family-protein
MNYTPIAKAAESASKSSIVSASPTFPTSAQISSCLYTFGASIVVAFVLYILLFYLLRSFLRRTEKDTAVFILGMLQIPVIVIFILASLKLSLSQLETRGIINWIDRGLTACLILALTYGINVLFTEAAIYYLKVYARKTEAVWDDVLIPLIQNFIPVITYVIGISLFFTTLGVDLTGIGLAIGSITVVLGLAVKDILSDFFSGLVLLVDTPFRFGDVISMPDGSIAIIKHIGIRVTKLYLINEHCEVYTPNTTLGGQNIVNLSRPTTHYAYTIQVSVRVDADAVVATNILQQIIVGHPDTLGNIDEKLQFLDSFAALREAEGDKLSKKEAGRLRLLVEKDVNSQLKKIEQAFGDFVREVKKLEKGGLNSEERGNLQKSYLEILNFVGLIAITERKKNKGKWLQSHLEEQVQTEKSTLISLIRQWYQTWLKDPDLVIEDQHLLPDEWEQKIELMKIKLNKLFQKILNPGVDESRLDDYSLKFVEWLHDSFKESNTTWKEPQVQLTDIQGSAMQFSVRFYVDNIQLEHWRRGNRIQNEVRREMVRRLRQAYIYTLG
>NZ_CP040094.1|WP_174711285.1|5023496_5024651_-|KamA-family-radical-SAM-protein
MLKNTTLDPLVTDVRCEEICQILGETYNQERWNDWRWQMRHRLTKLEQFQRLLRLSVTEEQGLLIAPEKFAVAVTPYFASLLDPEDPFCPLRLQVIPRKEELIVSTADMVDPCGEDNDAPVPGLVHRYPDRVLLLALDTCATYCRYCTRSRLVSQGEMYPVTRRLDAIAAYLEEHTEIRDVLISGGDPLLMSDEPLNNLLERLRAIRHIEFIRIGSRVPSFLPQRITPELVVLLRKHRVWLSLHFCHVREFTPEVAQACDRLADGGIPLGSQTVLLKGVNDSEQALKQLFHGLLKLRVRPYYLYQCDPVVGTAHLRTSVQTGLDLISKLRGHTTGYAVPTYVIDAPGGGGKVPIQAETLLAYEQGTATVRNWAGQTYTYVDPVE
>NZ_CP040094.1|WP_174711284.1|5022501_5023491_-|D-alanine--D-alanine-ligase
MGLFIGLCYDLKTDYLKAGFNASEVMEFDDEETIIGLEAALFELGHQVERIGNGRELALQLAKGDRWDLVFNIAEGLQGRSREAQVPAVCELFAQPYTFSDPLTCALTLDKALAKRVIRDRGLPTAAFEVVSNTAEAIAVSLPMPLFLKPIAEGSSKGVTDRSLVKERKELVSTYELLRELFPQPVLVETFLPGRELTVGIVGNGSNSRVVGVMEVIFTDQAETSAYTTLNKNEYLERVSYRLLIDPEPLAVQARQLALDAYHSLGCRDAARVDLRCDVHGTLHFMEVNPLPGLHHIRSDLPIMGRLGGVTYTAIIAEIVDSAWQRYKC
>NZ_CP040094.1|WP_174711283.1|5020864_5022226_+|MATE-family-efflux-transporter
MELSLQEFKSKLILEVQACLQLAVPLVITQILEAGIPLLDGVMMGLLNSQALAAGALGAVTFSTLASICRSILSAAGVTVANAFGAGKIDQISRATGQGIWLAVTMCLPVMFIIWHFEYILLLTGQEENNVLLAQTYLRSIVWGFPAALGFCILKEVSSALNRPQFLTVITVTGLLLNAVANYVLMFGEFGLPTLGLAGIGWASTLIFWLNFIAAASWVCFDNYFKDYQLDLALNQFDKDMFIDIFQTGWFLGLQYGAEIGVFTTTALMMGWFGTDTLAAHEITVETESFVETVSIGISYAVTMRVGQLRGQDDLKGASRAGFVCIALITPFVSIVALIFLLFPKYIVAMYLDTSNLDNIEIVKTAIPFLAAGALVQIFYSIQTIAAGALIGLKDTKVPVLITMFAYWVLGLGGGYLMAFSLDWGAIGLWLGLVLGLFMGAVLLTWRFYWLTR
>NZ_CP040094.1|WP_174711282.1|5015306_5020643_+|ribosome-assembly-protein-4
MSSQQPPEDNHVNNDRTLKQLAWAIESSVGQFKLILARCNYASLRDRLISRLQEICQVEIRVLAVQHSNRTLYTAIQEEFGEEMPACVMVVGLESVQNLSVMLTSANQVREEFRKNFAFPLVLWIDDEIYKQLIQLAPDLESWATTRNFEISTQELVDFVTQTANDWFGNNLKFSVDIYVKLENELEAAQRYLLNKPDVYNLELQANLESLLGFIKQINNQKDSALRYYHKACKLWQLNNNLEHQIKILGEIGFCYYLKAFKHQYITHPDWQATWHYVQEYINFISQLRTPDLIANAVVKFGDILRDLQKWETLQSLTEKALVIHQTNNQLRELAKDYGFLAEVALAKKNWVEANQLVQEALKVFAAIPNVESASISGVVSEISERDFKSKDFSLYQFVLGRSQYHLGQTQQANLSLETARDVGNPLEDVRLYLDILRFLQQLYFERKEYLKAYKIKQQQRSIEQQFGLRAFIGAGRLEATKQAFVETLRSNSPQGNIAPEIAASGRLLDVERLIERMGRPDYKLIVIHGQSGVGKSSLVNAGLVPALKNKAIGIQDYMPVVMRVYTNWAEELGRLLGRDEGDKRGKGDERELEGQLSSSEGQRPPSEGQRSSSEGQRSSSEGQRSSSEGQRPPSEGQRSSSEGQRPPSEGQRPPSEGQLPPSEGQLPPSELGTPQYLISRLKENEQCNLRTVLIFDQFEEFFFVYTEPAQRKQFFEFLGKCLNVLSVKVILSLRVDYIHYLLECNDLSSLKIIGNDILSNNVLYKLGNFSPADTKSIIQRLTEHTSFRLEDALVEQLVQDLADGLGEVRPIELQVVGAQLQTENITTLAEYRQRGTKDELVKRYLDEVVNDCGVENQQAAEILLYLLTDEKGTRPLKTRAELERDLLPYFSEIPPTPLKKGGFIFSTPFLRGSTQAGGSEARAEQASEISKLDLVLKIFVQSGLVVLLPENPADRYQLVHDYIAAFIRQQQEPKLKQVMAELEKERKERKLSDAKLNNFLKRALFGSVAAGLVLAGLTGLSWRSANEANEQKKVADINEINAINNSSEAFLASGQHPDALIAALKASEKLKRTPSALKRSDTRMQTVATLRQAVYLKPNEKKENRAIEVNTLEGHSDTVRSVAYSPNGQQLASASDDNTLKIWDVSSGQLLKTLTGHSDGIKSIAYSPNGQQLASASGDNTMKIWDVSSGRLLKTLTGHSGWVNSVVYSPNGQQLASASEDKTIKIWDVSSGQLLKTLTGHSSLVISVAYSPNGQQLASASGDNTMKIWDVSSGQLLKTLTGHSGQVISVVYSPNGQQLASASADKTMKIWDVSSGQLLKTLIGHSSAVISVAYSPNGQQLASASEDKTLKIWDVSSGQLLKTLIGHSDAVSSVAYSPNGQQLASASFDKTLKIWDVSSGQLLKTLTGHSSAVISVVYSPNGQQLASASADKTMKIWDVSSGQLLKSLTGHSSTVISVAYSPNGQQLASASADNTIKIWDISSGQLLKTLAGHSSTVNSIAYSLNGQQLASASADKTLKIWDVSSGQLLKTLTGHSSAVISIAYSPNGQQLASASADKTLKIWDVSSGQLLKTLTGHSDIVYSVAYSPNGQQLASASADNTIKIWDVSSGQLFKTLTGHSYRVNSVAYSPNGQQLASASEDKTIKIWDVSSGQLLKSLTGHSDIVYSVAYSPNGQQLASASSDKTIMLWDFDFDNLLHSGCNLLNNYFIGHPEVLEELQSCQTPSRKAQGATTLVIQGEKLARNNDIQGAVEKFNKAQQWNNKLKFDSQARAKELAN
>NZ_CP040094.1|WP_174711281.1|5013878_5015231_+|AAA-family-ATPase
MPIDLREFYQASDPSRTLFVNNSSDGKYYIDFSSVRGGDILGKLKQKITFFKPNEPTCTLFTGHIGCGKSTELLRLQAELEKLGFHVVYFESSDDLEMTDVDIADVLLAIARRVSQSLDKIILDSPNKFNELLQGAWKVLNSEVTGAKVKVPVVGDVGLSTDKEKLSLSVGIGEITAKMKNDPTLREKLNQYLAPQKTKLLEAINQELLEPAIAKLKQQGKNGLVVIVDNLDRIDNRVKPWGRPQQEYLFVDQGEFLTKLNCHLIYTMPLSLKFSNDYGMLTQRFPEDPKVLPMVPVQKTDGSVHLQGMALMQQMVLARAFPDITPEERLNRITEIFDSAASLERLCKMSGGHVRDVLRLLNTWIMEEMSLPLTRETLEQVIRSRRNEIMLPISDEEWQLLRHVKERKKVSDDHGYQKLIRSRFVFEYRDGGESWFDVNPVLAEARELSL
>NZ_CP040094.1|WP_174711280.1|5013125_5013323_+|hypothetical-protein
MLHIGDYALHQRTGQIGQVFGYGHQVMDGVYITTLKVRVSKHKGTRRQSRFLEDAYSRWILAEAE
>NZ_CP040094.1|WP_174711279.1|5011749_5013021_+|glycosyltransferase
MFQNKKHRIALISVDGDPAVEIGQEEAGGQNVYVRQVGYALAQQGWQVDMFTRRSNPEQAAIAQHSPNCRTIRLKAGPAEFIGRDNLFQHLPEFIEEFQQFQQRQGFHYSLIHTNYWLSSWVGMELKKQQPLIQVHTYHSLGAVKYRSIGDVPVIAAQRLAVEKACLETIDCVVATSPQEQQHMRILVSSKGNIEMIPCGTDTDKFGGIERSAARENLGIAPDAKMILYVGRFDRRKGIETLVRAVGKSSLRGEANLQLVIGGGSRPGQSDGIERDRIASIVTELGLENCTSFTDRLDETVLPFYYAAADVCVVPSHYEPFGLVAIEAMASKTPVVASDVGGLQFTVVPKVTGLLAPPKDEVAFAAAIDRILTNPAWRDELGEAARQRTEIAFSWYSVGFRLTQLYTRLLAQTAPNTQLRIAA
>NZ_CP040094.1|WP_174711278.1|5009291_5011130_+|alkaline-phosphatase-family-protein
MFLPKIYKSFLIIATVTLITVLAVSGFAKTKPQHNVIIFITDGLRPSKVNAQETPNLHQIRQQGVSFVNSHSLFPTFTTANASAIATGHYLGDTGDFSNTINVGFPVNSASNSPVPFLENNAVLGEISQHFNGNYLNEESLLDAAREAGFSTAAVGKVGPVLIQDVTQRSGKSTIIIDDATGSQTGIPLSSEIAELLTKNGIALKSPTRGDNGKSGNSTVPGTKVANIFQQQYFADITTKVLLPLFKQRQKPFVLIYWSRDPDGTQHNQGDSLNTLTPGINGPTSLAARQNVDNNLGQIRAVLKQLNLEASTNIFVTADHGFSTISKESKTSYSRTLNYPDVMKGFLPPGFLAIDIAHGLGLPLFDPDKQNATVAPTQGQFSKNGLIGKDPSKPDVLVASNGGSDLIYLPNSANNKALAKQVVDILLKEDYVSGLFVNDKLGSIPGTLPLSAIGLNGKSHLPSPAIAVNFRTFDTGCGDPTACGVEVADSSLQQGQGMHGSFSRADTYNYMAAIGPDFKKAFVDRVPVSNADVAITLANTLNLKIPHQGKLIGRVLHESLVKGVKKVSFKSHTLTSQPSTSGLKTILKYQTVASTRYFDVAGFPGRTLGLAK
>NZ_CP040094.1|WP_174711277.1|5007951_5008950_-|DUF1350-family-protein
MVNTNLKLRFKPVSHSWVALHPQPKGVIQFVAGAFFGTFAPMLFYRHLLQSLFEQGYTIILLPFNFTFDHYVEAGFLMREQYEILPELVRMATVEGYDYEAYLDDKNFSWIGHSLGCKYISLLEGFTALPPEPQEREKFIRSLLAYTSNESQIKTVIADINILFEELQRKIAEDQKLICTYVNRKVKINSVFIKGQVSILLAPDISDTASAIRPQFLANIIDNLGWGVKPTPEETKNLIKDSGLFHIMGLVCFRSDNIAKLTCEWFTDILKKPPQKFLETLEGGHLKPLGIQLGKYVINLFDQPLVESVQNRNKGFENHVIQLLNELKKESK
>NZ_CP040094.1|WP_174711288.1|5031165_5031972_+|hypothetical-protein
MQFTINPLFKKLSVKYLTVITAIVTILPLPVNAATFLVTERAGLEGNDQVNWGSLGKVFNPSAPDFSVFLPNSFSTTSQGGLGLDINIAPTNNPRVTPPFVFQTLPSPGIRSNFALGDFILFGGIDPTGFIPLPPGTPDPGTKGNGEPLTISFDQPVFGAGAQIAIDSSKLKIETFLNAFDSTNNLLASFSVPNISSLALDNSAVFLGVRSDTPNISRLVFSSSAPQFGLAINQVSILAVPESTYTLAILAFGFSGAVLKLRQRNLAK
>NZ_CP040094.1|WP_174711289.1|5032886_5034065_+|MFS-transporter
MTVFIDLLGFGIILPILPLYAEQFGAKPNEATLLVAIYSLMQFLFAPVWGRFSDRYGRRPVLLLTLFGSVIAYAGLGFANSLWMLFLARSLAGIMAGNISTAQAYIADITTPTNRARGMGIIGAAFGLGFILGPAIGGLLIGSDPDNANFHLPSLFSGGLSLFALLCALTLVPESLNSETKAKMQANRHRRRRLNLLQLSQRPQFCVLVGIYFFVTFAVAAMDSTLALWSKQQLNWGPQQTSYLFAFMGIVSTIVQGGLIGFLKKHFGEIKLLTLGILGLGLGLLLIGFSQSLSLLLVATTLVAWGISVSQPILNSLISQMTAPEEQGQILGIASSCSALARIVGPSWAGISFMKFGSDSPFLSGFLVMIVALVLSLRVTKSASESNKERIA
>NZ_CP040094.1|WP_174708137.1|5034158_5035181_+|IS4-family-transposase
MIINSFPKIVKDILKSLPKNDYPVLNSRLFFECWLSYALDNSLTSMRDLFNRLNNNCFEVDISTFSKANLHRSQKPFQEIYQKLNELVQKKVQKKLHNKYAICPIDSTIITLTSKLLWVLGHHQVKLFSSLNLSTGSPEDNFINFGHDHDYKFGSKMMSSLPINAVGVMDRGFAGLKFIQELVQENKYFVLRIKNNWKLEFDGSNGLVKVGASDDAQAYRVINFCDLETKTEFRLVTNLPESGDAAVHDDEIRDIYRLRWGVELLWKFLKMHLKLDKLITKNVNGITIQIYVSLIAYLILQLLSIPEQWGHTLLDKFRYLQSCMCQKISYVHWFEEMMFC
>NZ_CP040094.1|WP_174711290.1|5035387_5036365_+|hypothetical-protein
MTGRRVLFLGIFVSILLTYAIWIGGSIPASIIKLPDQGLNWYYWKLPQPTFWSRTTAWGMYIGHQFSIWACILWAQRSQLKYKSALHPINYLMLAINGIFIALHFLQTYIWYDALAQDTSIWASQGAVVLLLVFVLILETPRRGLFFGNSVPFHQQFLQIIKLYHGYFFSFAAIYTFWYHPMEATVGHLIGFLYMFLLLLQSSLIFNRAHVNRWWTFTLEITVLLHSVVVSLMLGQSKWPTFLFGFFGILVLTQLHGLPVSIWTKRIIYTAFLMSVMVVYGLTERGLGRIYEITYIPLIEFGLVGAIYLIFLLILWTISRVPIKT
>NZ_CP040094.1|WP_174711291.1|5036529_5037975_-|deoxyribodipyrimidine-photo-lyase,-8-HDF-type
MSDLILFWHRRDLRISDNTGLAAAKQQSPKVVGVFCLDPHILERDDVAPVRVTYMIGCLQKLQERYAQVGSQLLILHADPVQAIPALAEAINAKAVFWNWDVEPYSQERDRTVINALKEKGIEFLNQNWDQILNSPDDIRTGGNSPYTVYTPFWKNWITKPKANPVETLQNVEGLTEAEQEIAKLAGSLTLPSAKDLGFIWDEQLIISPGEAAAQERLEEFTNKAITEYQEQRNFPGVDGTSQLSAALKFGVIGIRTVWQATIEALENSRSEETAVNIRTWQQELAWREFYQHAMYNFPELADGAFRDTFKNFPWETNEEHFQAWCEGRTGYPIVDAAMRQMNESGWMHNRCRMIVASFLTKDLLINPQLGEKYFMKHLIDGDLSANNGGWQWSASSGMDPKPVRIFNPASQTQKFDPEGEYIRQWVSELRSVDTEYLVTGKIPPLERHAVGYPDPIVDHKIQQNQFKLRYQQQKNISGGE
>NZ_CP040094.1|WP_174711292.1|5038167_5038320_+|hypothetical-protein
MPSLRDAARTTNALLATIRLCAAGTRFSCGDVLRTDLGGMKGLRLRQKLQ
>NZ_CP040094.1|WP_174711293.1|5043188_5044577_+|hypothetical-protein
MRSNADVRGGTITIDTERLRLSNGGNISTSVLIGGKGQGGNLVVRATDSIDITGVGGELLYSSHLAPSGLFAELQTGGIGSGGSIDVTIGRLNLSNQGEISATTFNQGNAGNIGINAEKIDLRGSSRIITQVDSEAKGNAGNINIKTQLLNVQEESQISSGTRGNGNAGNLTVKADNIILTGSDSESASSLTSSVDEKANGQGADIDITTNRLIVRDDAEIVSGSLGTGDAGNIRIKANFIEILGKGSAIASLTNAGNGGDITLDIADLLLLRDRGLISTTAGRSQVGGNGGNININSKFIVAIPEENSDISANAYTGTGGKVKINSQGIFGIEARSQPTDKSDITASSQLGVSGFTDINAPDTSSIQNSFTEASPNLIDTNALIANSCISRSSKQGGTFFITGSGALRNSPGNGLISVYSTGEVRNVEPTSRAWKKGDPIIEAEGVYRLANGQLLLSRGCQ
>NZ_CP040094.1|WP_174711294.1|5044622_5045525_+|uroporphyrinogen-III-synthase
MLILDRIELISFIHKQMHIQSTQINMLTPSRELPLYSKRILVTAPRNYACRLSEQIIKQGGLPVLMPTIEICYLSNYTNLDAALNRIAEFDWIVFTSRNGITAFFHRMNDLNIPVSLVQKCQLCALGKDAESLLYFCGKVDLIPTESSPGGIVAELAKMPQIQNQKVLIPAPEVVGLPEPDVVPNLITDLQQLGIEVTRVPTYITQGLDTSIYSVELNQMRQGTIDVIAFSSTAEVESFLTMVNSQSDYERCIIACFGPYTTANARKLGVDVSIVSRDYSSFEGFAEAIAEFFTLTSNSD
>NZ_CP040094.1|WP_174711295.1|5045628_5045928_+|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein
MATYKVTLKTPDEEKTIEVSEDDYILEIANEENEMDLPYSCNAGSCSTCAGKLVSGTVDQSDQNFLDDDQIDAGWVLTCVAKPTSDCVILTHQEDELNG
>NZ_CP040094.1|WP_174708137.1|5046170_5047193_+|IS4-family-transposase
MIINSFPKIVKDILKSLPKNDYPVLNSRLFFECWLSYALDNSLTSMRDLFNRLNNNCFEVDISTFSKANLHRSQKPFQEIYQKLNELVQKKVQKKLHNKYAICPIDSTIITLTSKLLWVLGHHQVKLFSSLNLSTGSPEDNFINFGHDHDYKFGSKMMSSLPINAVGVMDRGFAGLKFIQELVQENKYFVLRIKNNWKLEFDGSNGLVKVGASDDAQAYRVINFCDLETKTEFRLVTNLPESGDAAVHDDEIRDIYRLRWGVELLWKFLKMHLKLDKLITKNVNGITIQIYVSLIAYLILQLLSIPEQWGHTLLDKFRYLQSCMCQKISYVHWFEEMMFC

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Crispr_ID: NZ_CP040094_23

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040094_23

5027934-5028047

Orphan

N:A

Consensus_repeat	Method
GACATCATTGATGGTGGAGAAGGCAACGATAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040094_23

>merge|NZ_CP040094|23|5027934-5028047|CRISPRCasFinder
GACATCATTGATGGTGGAGAAGGCAACGATACTTTGGCTGGTAATGGCGGTGATGATACATTCAAGGGCGGTCGAGGTAACGACAGCATTGATGGTGGAGAAGGCAACGATACC

>NZ_CP040094|23|22|5027934-5028047|CRISPRCasFinder
GACATCATTGATGGTGGAGAAGGCAACGATAC	TTTGGCTGGTAATGGCGGTGATGATACATTCAAGGGCGGTCGAGGTAAC
GACAGCATTGATGGTGGAGAAGGCAACGATACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040094.1\|WP_174708137.1\|5034158_5035181_+\|IS4-family-transposase	unknown	unknown	gnl\|CDD\|376573
NZ_CP040094.1\|WP_174711288.1\|5031165_5031972_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174711291.1\|5036529_5037975_-\|deoxyribodipyrimidine-photo-lyase,-8-HDF-type	unknown	unknown	gnl\|CDD\|274644
NZ_CP040094.1\|WP_174711290.1\|5035387_5036365_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174711294.1\|5044622_5045525_+\|uroporphyrinogen-III-synthase	unknown	unknown	gnl\|CDD\|224503
NZ_CP040094.1\|WP_174711277.1\|5007951_5008950_-\|DUF1350-family-protein	unknown	unknown	gnl\|CDD\|115718
NZ_CP040094.1\|WP_174711295.1\|5045628_5045928_+\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|273926
NZ_CP040094.1\|WP_174711293.1\|5043188_5044577_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174711286.1\|5025284_5026949_+\|mechanosensitive-ion-channel-family-protein	unknown	unknown	gnl\|CDD\|223740
NZ_CP040094.1\|WP_174711292.1\|5038167_5038320_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174711279.1\|5011749_5013021_+\|glycosyltransferase	unknown	unknown	gnl\|CDD\|340830
NZ_CP040094.1\|WP_174711282.1\|5015306_5020643_+\|ribosome-assembly-protein-4	unknown	unknown	gnl\|CDD\|238121
NZ_CP040094.1\|WP_174711289.1\|5032886_5034065_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340888
NZ_CP040094.1\|WP_174711284.1\|5022501_5023491_-\|D-alanine--D-alanine-ligase	unknown	unknown	gnl\|CDD\|234948
NZ_CP040094.1\|WP_174711283.1\|5020864_5022226_+\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|240536
NZ_CP040094.1\|WP_174708137.1\|5046170_5047193_+\|IS4-family-transposase	unknown	unknown	gnl\|CDD\|376573
NZ_CP040094.1\|WP_174711280.1\|5013125_5013323_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174711285.1\|5023496_5024651_-\|KamA-family-radical-SAM-protein	unknown	unknown	gnl\|CDD\|163532
NZ_CP040094.1\|WP_174711278.1\|5009291_5011130_+\|alkaline-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|366747
NZ_CP040094.1\|WP_174711281.1\|5013878_5015231_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|377105

Protein	Function_ID	Function_description	E-value
NZ_CP040094.1\|WP_174708137.1\|5034158_5035181_+\|IS4-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	1.97298e-17
NZ_CP040094.1\|WP_174711291.1\|5036529_5037975_-\|deoxyribodipyrimidine-photo-lyase,-8-HDF-type	gnl\|CDD\|274644	TIGR03556, photolyase_8HDF, deoxyribodipyrimidine photo-lyase, 8-HDF type. This model describes a narrow clade of cyanobacterial deoxyribodipyrimidine photo-lyase. This group, in contrast to several closely related proteins, uses a chromophore that, in other lineages is modified further to become coenzyme F420. This chromophore is called 8-HDF in most articles on the DNA photolyase and FO in most literature on coenzyme F420. [DNA metabolism, DNA replication, recombination, and repair].	0
NZ_CP040094.1\|WP_174711294.1\|5044622_5045525_+\|uroporphyrinogen-III-synthase	gnl\|CDD\|224503	COG1587, HemD, Uroporphyrinogen-III synthase [Coenzyme metabolism].	3.96239e-47
NZ_CP040094.1\|WP_174711277.1\|5007951_5008950_-\|DUF1350-family-protein	gnl\|CDD\|115718	pfam07082, DUF1350, Protein of unknown function (DUF1350). This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.	7.00261e-14
NZ_CP040094.1\|WP_174711295.1\|5045628_5045928_+\|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein	gnl\|CDD\|273926	TIGR02008, Ferredoxin_root_R-B1, ferredoxin [2Fe-2S]. This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.	1.50993e-46
NZ_CP040094.1\|WP_174711286.1\|5025284_5026949_+\|mechanosensitive-ion-channel-family-protein	gnl\|CDD\|223740	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	1.1941e-24
NZ_CP040094.1\|WP_174711279.1\|5011749_5013021_+\|glycosyltransferase	gnl\|CDD\|340830	cd03800, GT4_sucrose_synthase, sucrose-phosphate synthase and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.	2.32178e-150
NZ_CP040094.1\|WP_174711282.1\|5015306_5020643_+\|ribosome-assembly-protein-4	gnl\|CDD\|238121	cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment.	1.04242e-119
NZ_CP040094.1\|WP_174711281.1\|5013878_5015231_+\|AAA-family-ATPase	gnl\|CDD\|377105	pfam03709, OKR_DC_1_N, Orn/Lys/Arg decarboxylase, N-terminal domain. This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure.	0.00342872
NZ_CP040094.1\|WP_174711284.1\|5022501_5023491_-\|D-alanine--D-alanine-ligase	gnl\|CDD\|234948	PRK01372, ddl, D-alanine--D-alanine ligase; Reviewed.	9.87107e-52
NZ_CP040094.1\|WP_174711283.1\|5020864_5022226_+\|MATE-family-efflux-transporter	gnl\|CDD\|240536	cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM. The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Vibrio cholerae NorM and functions most likely as a multidrug efflux pump, removing xenobiotics from the interior of the cell. The pump utilizes a cation gradient across the membrane to facilitate the export process. NorM appears to bind monovalent cations in an outward-facing conformation and may subsequently cycle through an inward-facing and outward-facing conformation to capture and release its substrate.	3.78169e-131
NZ_CP040094.1\|WP_174708137.1\|5046170_5047193_+\|IS4-family-transposase	gnl\|CDD\|376573	pfam01609, DDE_Tnp_1, Transposase DDE domain. Transposase proteins are necessary for efficient DNA transposition. This domain is a member of the DDE superfamily, which contain three carboxylate residues that are believed to be responsible for coordinating metal ions needed for catalysis. The catalytic activity of this enzyme involves DNA cleavage at a specific site followed by a strand transfer reaction. This family contains transposases for IS4, IS421, IS5377, IS427, IS402, IS1355, IS5, which was original isolated in bacteriophage lambda.	1.97298e-17
NZ_CP040094.1\|WP_174711285.1\|5023496_5024651_-\|KamA-family-radical-SAM-protein	gnl\|CDD\|163532	TIGR03820, lys_2_3_AblA, lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.	1.67141e-158
NZ_CP040094.1\|WP_174711278.1\|5009291_5011130_+\|alkaline-phosphatase-family-protein	gnl\|CDD\|366747	pfam01663, Phosphodiest, Type I phosphodiesterase / nucleotide pyrophosphatase. This family consists of phosphodiesterases, including human plasma-cell membrane glycoprotein PC-1 / alkaline phosphodiesterase i / nucleotide pyrophosphatase (nppase). These enzymes catalyze the cleavage of phosphodiester and phosphosulfate bonds in NAD, deoxynucleotides and nucleotide sugars. Also in this family is ATX an autotaxin, tumor cell motility-stimulating protein which exhibits type I phosphodiesterases activity. The alignment encompasses the active site. Also present with in this family is 60-kDa Ca2+-ATPase form F. odoratum.	1.01782e-27
NZ_CP040094.1\|WP_174711289.1\|5032886_5034065_+\|MFS-transporter	gnl\|CDD\|340888	cd17330, MFS_SLC46_TetA_like, Eukaryotic Solute carrier 46 (SLC46) family, Bacterial Tetracycline resistance proteins, and similar proteins of the Major Facilitator Superfamily of transporters. This family is composed of the eukaryotic proteins MFSD9, MFSD10, MFSD14, and SLC46 family proteins, as well as bacterial multidrug resistance (MDR) transporters such as tetracycline resistance protein TetA and multidrug resistance protein MdtG. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. TetA proteins confer resistance to tetracycline while MdtG confers resistance to fosfomycin and deoxycholate. The Solute carrier 46 (SLC46) family is composed of three vertebrate members (SLC46A1, SLC46A2, and SLC46A3), the best-studied of which is SLC46A1, which functions both as an intestinal proton-coupled high-affinity folate transporter involved in the absorption of folates and as an intestinal heme transporter which mediates heme uptake. MFSD10 facilitates the uptake of organic anions such as some non-steroidal anti-inflammatory drugs (NSAIDs) and confers resistance to such NSAIDs. The SLC46/TetA-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.25423e-85

>NZ_CP040094.1|WP_174711286.1|5025284_5026949_+|mechanosensitive-ion-channel-family-protein
MNYTPIAKAAESASKSSIVSASPTFPTSAQISSCLYTFGASIVVAFVLYILLFYLLRSFLRRTEKDTAVFILGMLQIPVIVIFILASLKLSLSQLETRGIINWIDRGLTACLILALTYGINVLFTEAAIYYLKVYARKTEAVWDDVLIPLIQNFIPVITYVIGISLFFTTLGVDLTGIGLAIGSITVVLGLAVKDILSDFFSGLVLLVDTPFRFGDVISMPDGSIAIIKHIGIRVTKLYLINEHCEVYTPNTTLGGQNIVNLSRPTTHYAYTIQVSVRVDADAVVATNILQQIIVGHPDTLGNIDEKLQFLDSFAALREAEGDKLSKKEAGRLRLLVEKDVNSQLKKIEQAFGDFVREVKKLEKGGLNSEERGNLQKSYLEILNFVGLIAITERKKNKGKWLQSHLEEQVQTEKSTLISLIRQWYQTWLKDPDLVIEDQHLLPDEWEQKIELMKIKLNKLFQKILNPGVDESRLDDYSLKFVEWLHDSFKESNTTWKEPQVQLTDIQGSAMQFSVRFYVDNIQLEHWRRGNRIQNEVRREMVRRLRQAYIYTLG
>NZ_CP040094.1|WP_174711285.1|5023496_5024651_-|KamA-family-radical-SAM-protein
MLKNTTLDPLVTDVRCEEICQILGETYNQERWNDWRWQMRHRLTKLEQFQRLLRLSVTEEQGLLIAPEKFAVAVTPYFASLLDPEDPFCPLRLQVIPRKEELIVSTADMVDPCGEDNDAPVPGLVHRYPDRVLLLALDTCATYCRYCTRSRLVSQGEMYPVTRRLDAIAAYLEEHTEIRDVLISGGDPLLMSDEPLNNLLERLRAIRHIEFIRIGSRVPSFLPQRITPELVVLLRKHRVWLSLHFCHVREFTPEVAQACDRLADGGIPLGSQTVLLKGVNDSEQALKQLFHGLLKLRVRPYYLYQCDPVVGTAHLRTSVQTGLDLISKLRGHTTGYAVPTYVIDAPGGGGKVPIQAETLLAYEQGTATVRNWAGQTYTYVDPVE
>NZ_CP040094.1|WP_174711284.1|5022501_5023491_-|D-alanine--D-alanine-ligase
MGLFIGLCYDLKTDYLKAGFNASEVMEFDDEETIIGLEAALFELGHQVERIGNGRELALQLAKGDRWDLVFNIAEGLQGRSREAQVPAVCELFAQPYTFSDPLTCALTLDKALAKRVIRDRGLPTAAFEVVSNTAEAIAVSLPMPLFLKPIAEGSSKGVTDRSLVKERKELVSTYELLRELFPQPVLVETFLPGRELTVGIVGNGSNSRVVGVMEVIFTDQAETSAYTTLNKNEYLERVSYRLLIDPEPLAVQARQLALDAYHSLGCRDAARVDLRCDVHGTLHFMEVNPLPGLHHIRSDLPIMGRLGGVTYTAIIAEIVDSAWQRYKC
>NZ_CP040094.1|WP_174711283.1|5020864_5022226_+|MATE-family-efflux-transporter
MELSLQEFKSKLILEVQACLQLAVPLVITQILEAGIPLLDGVMMGLLNSQALAAGALGAVTFSTLASICRSILSAAGVTVANAFGAGKIDQISRATGQGIWLAVTMCLPVMFIIWHFEYILLLTGQEENNVLLAQTYLRSIVWGFPAALGFCILKEVSSALNRPQFLTVITVTGLLLNAVANYVLMFGEFGLPTLGLAGIGWASTLIFWLNFIAAASWVCFDNYFKDYQLDLALNQFDKDMFIDIFQTGWFLGLQYGAEIGVFTTTALMMGWFGTDTLAAHEITVETESFVETVSIGISYAVTMRVGQLRGQDDLKGASRAGFVCIALITPFVSIVALIFLLFPKYIVAMYLDTSNLDNIEIVKTAIPFLAAGALVQIFYSIQTIAAGALIGLKDTKVPVLITMFAYWVLGLGGGYLMAFSLDWGAIGLWLGLVLGLFMGAVLLTWRFYWLTR
>NZ_CP040094.1|WP_174711282.1|5015306_5020643_+|ribosome-assembly-protein-4
MSSQQPPEDNHVNNDRTLKQLAWAIESSVGQFKLILARCNYASLRDRLISRLQEICQVEIRVLAVQHSNRTLYTAIQEEFGEEMPACVMVVGLESVQNLSVMLTSANQVREEFRKNFAFPLVLWIDDEIYKQLIQLAPDLESWATTRNFEISTQELVDFVTQTANDWFGNNLKFSVDIYVKLENELEAAQRYLLNKPDVYNLELQANLESLLGFIKQINNQKDSALRYYHKACKLWQLNNNLEHQIKILGEIGFCYYLKAFKHQYITHPDWQATWHYVQEYINFISQLRTPDLIANAVVKFGDILRDLQKWETLQSLTEKALVIHQTNNQLRELAKDYGFLAEVALAKKNWVEANQLVQEALKVFAAIPNVESASISGVVSEISERDFKSKDFSLYQFVLGRSQYHLGQTQQANLSLETARDVGNPLEDVRLYLDILRFLQQLYFERKEYLKAYKIKQQQRSIEQQFGLRAFIGAGRLEATKQAFVETLRSNSPQGNIAPEIAASGRLLDVERLIERMGRPDYKLIVIHGQSGVGKSSLVNAGLVPALKNKAIGIQDYMPVVMRVYTNWAEELGRLLGRDEGDKRGKGDERELEGQLSSSEGQRPPSEGQRSSSEGQRSSSEGQRSSSEGQRPPSEGQRSSSEGQRPPSEGQRPPSEGQLPPSEGQLPPSELGTPQYLISRLKENEQCNLRTVLIFDQFEEFFFVYTEPAQRKQFFEFLGKCLNVLSVKVILSLRVDYIHYLLECNDLSSLKIIGNDILSNNVLYKLGNFSPADTKSIIQRLTEHTSFRLEDALVEQLVQDLADGLGEVRPIELQVVGAQLQTENITTLAEYRQRGTKDELVKRYLDEVVNDCGVENQQAAEILLYLLTDEKGTRPLKTRAELERDLLPYFSEIPPTPLKKGGFIFSTPFLRGSTQAGGSEARAEQASEISKLDLVLKIFVQSGLVVLLPENPADRYQLVHDYIAAFIRQQQEPKLKQVMAELEKERKERKLSDAKLNNFLKRALFGSVAAGLVLAGLTGLSWRSANEANEQKKVADINEINAINNSSEAFLASGQHPDALIAALKASEKLKRTPSALKRSDTRMQTVATLRQAVYLKPNEKKENRAIEVNTLEGHSDTVRSVAYSPNGQQLASASDDNTLKIWDVSSGQLLKTLTGHSDGIKSIAYSPNGQQLASASGDNTMKIWDVSSGRLLKTLTGHSGWVNSVVYSPNGQQLASASEDKTIKIWDVSSGQLLKTLTGHSSLVISVAYSPNGQQLASASGDNTMKIWDVSSGQLLKTLTGHSGQVISVVYSPNGQQLASASADKTMKIWDVSSGQLLKTLIGHSSAVISVAYSPNGQQLASASEDKTLKIWDVSSGQLLKTLIGHSDAVSSVAYSPNGQQLASASFDKTLKIWDVSSGQLLKTLTGHSSAVISVVYSPNGQQLASASADKTMKIWDVSSGQLLKSLTGHSSTVISVAYSPNGQQLASASADNTIKIWDISSGQLLKTLAGHSSTVNSIAYSLNGQQLASASADKTLKIWDVSSGQLLKTLTGHSSAVISIAYSPNGQQLASASADKTLKIWDVSSGQLLKTLTGHSDIVYSVAYSPNGQQLASASADNTIKIWDVSSGQLFKTLTGHSYRVNSVAYSPNGQQLASASEDKTIKIWDVSSGQLLKSLTGHSDIVYSVAYSPNGQQLASASSDKTIMLWDFDFDNLLHSGCNLLNNYFIGHPEVLEELQSCQTPSRKAQGATTLVIQGEKLARNNDIQGAVEKFNKAQQWNNKLKFDSQARAKELAN
>NZ_CP040094.1|WP_174711281.1|5013878_5015231_+|AAA-family-ATPase
MPIDLREFYQASDPSRTLFVNNSSDGKYYIDFSSVRGGDILGKLKQKITFFKPNEPTCTLFTGHIGCGKSTELLRLQAELEKLGFHVVYFESSDDLEMTDVDIADVLLAIARRVSQSLDKIILDSPNKFNELLQGAWKVLNSEVTGAKVKVPVVGDVGLSTDKEKLSLSVGIGEITAKMKNDPTLREKLNQYLAPQKTKLLEAINQELLEPAIAKLKQQGKNGLVVIVDNLDRIDNRVKPWGRPQQEYLFVDQGEFLTKLNCHLIYTMPLSLKFSNDYGMLTQRFPEDPKVLPMVPVQKTDGSVHLQGMALMQQMVLARAFPDITPEERLNRITEIFDSAASLERLCKMSGGHVRDVLRLLNTWIMEEMSLPLTRETLEQVIRSRRNEIMLPISDEEWQLLRHVKERKKVSDDHGYQKLIRSRFVFEYRDGGESWFDVNPVLAEARELSL
>NZ_CP040094.1|WP_174711280.1|5013125_5013323_+|hypothetical-protein
MLHIGDYALHQRTGQIGQVFGYGHQVMDGVYITTLKVRVSKHKGTRRQSRFLEDAYSRWILAEAE
>NZ_CP040094.1|WP_174711279.1|5011749_5013021_+|glycosyltransferase
MFQNKKHRIALISVDGDPAVEIGQEEAGGQNVYVRQVGYALAQQGWQVDMFTRRSNPEQAAIAQHSPNCRTIRLKAGPAEFIGRDNLFQHLPEFIEEFQQFQQRQGFHYSLIHTNYWLSSWVGMELKKQQPLIQVHTYHSLGAVKYRSIGDVPVIAAQRLAVEKACLETIDCVVATSPQEQQHMRILVSSKGNIEMIPCGTDTDKFGGIERSAARENLGIAPDAKMILYVGRFDRRKGIETLVRAVGKSSLRGEANLQLVIGGGSRPGQSDGIERDRIASIVTELGLENCTSFTDRLDETVLPFYYAAADVCVVPSHYEPFGLVAIEAMASKTPVVASDVGGLQFTVVPKVTGLLAPPKDEVAFAAAIDRILTNPAWRDELGEAARQRTEIAFSWYSVGFRLTQLYTRLLAQTAPNTQLRIAA
>NZ_CP040094.1|WP_174711278.1|5009291_5011130_+|alkaline-phosphatase-family-protein
MFLPKIYKSFLIIATVTLITVLAVSGFAKTKPQHNVIIFITDGLRPSKVNAQETPNLHQIRQQGVSFVNSHSLFPTFTTANASAIATGHYLGDTGDFSNTINVGFPVNSASNSPVPFLENNAVLGEISQHFNGNYLNEESLLDAAREAGFSTAAVGKVGPVLIQDVTQRSGKSTIIIDDATGSQTGIPLSSEIAELLTKNGIALKSPTRGDNGKSGNSTVPGTKVANIFQQQYFADITTKVLLPLFKQRQKPFVLIYWSRDPDGTQHNQGDSLNTLTPGINGPTSLAARQNVDNNLGQIRAVLKQLNLEASTNIFVTADHGFSTISKESKTSYSRTLNYPDVMKGFLPPGFLAIDIAHGLGLPLFDPDKQNATVAPTQGQFSKNGLIGKDPSKPDVLVASNGGSDLIYLPNSANNKALAKQVVDILLKEDYVSGLFVNDKLGSIPGTLPLSAIGLNGKSHLPSPAIAVNFRTFDTGCGDPTACGVEVADSSLQQGQGMHGSFSRADTYNYMAAIGPDFKKAFVDRVPVSNADVAITLANTLNLKIPHQGKLIGRVLHESLVKGVKKVSFKSHTLTSQPSTSGLKTILKYQTVASTRYFDVAGFPGRTLGLAK
>NZ_CP040094.1|WP_174711277.1|5007951_5008950_-|DUF1350-family-protein
MVNTNLKLRFKPVSHSWVALHPQPKGVIQFVAGAFFGTFAPMLFYRHLLQSLFEQGYTIILLPFNFTFDHYVEAGFLMREQYEILPELVRMATVEGYDYEAYLDDKNFSWIGHSLGCKYISLLEGFTALPPEPQEREKFIRSLLAYTSNESQIKTVIADINILFEELQRKIAEDQKLICTYVNRKVKINSVFIKGQVSILLAPDISDTASAIRPQFLANIIDNLGWGVKPTPEETKNLIKDSGLFHIMGLVCFRSDNIAKLTCEWFTDILKKPPQKFLETLEGGHLKPLGIQLGKYVINLFDQPLVESVQNRNKGFENHVIQLLNELKKESK
>NZ_CP040094.1|WP_174711288.1|5031165_5031972_+|hypothetical-protein
MQFTINPLFKKLSVKYLTVITAIVTILPLPVNAATFLVTERAGLEGNDQVNWGSLGKVFNPSAPDFSVFLPNSFSTTSQGGLGLDINIAPTNNPRVTPPFVFQTLPSPGIRSNFALGDFILFGGIDPTGFIPLPPGTPDPGTKGNGEPLTISFDQPVFGAGAQIAIDSSKLKIETFLNAFDSTNNLLASFSVPNISSLALDNSAVFLGVRSDTPNISRLVFSSSAPQFGLAINQVSILAVPESTYTLAILAFGFSGAVLKLRQRNLAK
>NZ_CP040094.1|WP_174711289.1|5032886_5034065_+|MFS-transporter
MTVFIDLLGFGIILPILPLYAEQFGAKPNEATLLVAIYSLMQFLFAPVWGRFSDRYGRRPVLLLTLFGSVIAYAGLGFANSLWMLFLARSLAGIMAGNISTAQAYIADITTPTNRARGMGIIGAAFGLGFILGPAIGGLLIGSDPDNANFHLPSLFSGGLSLFALLCALTLVPESLNSETKAKMQANRHRRRRLNLLQLSQRPQFCVLVGIYFFVTFAVAAMDSTLALWSKQQLNWGPQQTSYLFAFMGIVSTIVQGGLIGFLKKHFGEIKLLTLGILGLGLGLLLIGFSQSLSLLLVATTLVAWGISVSQPILNSLISQMTAPEEQGQILGIASSCSALARIVGPSWAGISFMKFGSDSPFLSGFLVMIVALVLSLRVTKSASESNKERIA
>NZ_CP040094.1|WP_174708137.1|5034158_5035181_+|IS4-family-transposase
MIINSFPKIVKDILKSLPKNDYPVLNSRLFFECWLSYALDNSLTSMRDLFNRLNNNCFEVDISTFSKANLHRSQKPFQEIYQKLNELVQKKVQKKLHNKYAICPIDSTIITLTSKLLWVLGHHQVKLFSSLNLSTGSPEDNFINFGHDHDYKFGSKMMSSLPINAVGVMDRGFAGLKFIQELVQENKYFVLRIKNNWKLEFDGSNGLVKVGASDDAQAYRVINFCDLETKTEFRLVTNLPESGDAAVHDDEIRDIYRLRWGVELLWKFLKMHLKLDKLITKNVNGITIQIYVSLIAYLILQLLSIPEQWGHTLLDKFRYLQSCMCQKISYVHWFEEMMFC
>NZ_CP040094.1|WP_174711290.1|5035387_5036365_+|hypothetical-protein
MTGRRVLFLGIFVSILLTYAIWIGGSIPASIIKLPDQGLNWYYWKLPQPTFWSRTTAWGMYIGHQFSIWACILWAQRSQLKYKSALHPINYLMLAINGIFIALHFLQTYIWYDALAQDTSIWASQGAVVLLLVFVLILETPRRGLFFGNSVPFHQQFLQIIKLYHGYFFSFAAIYTFWYHPMEATVGHLIGFLYMFLLLLQSSLIFNRAHVNRWWTFTLEITVLLHSVVVSLMLGQSKWPTFLFGFFGILVLTQLHGLPVSIWTKRIIYTAFLMSVMVVYGLTERGLGRIYEITYIPLIEFGLVGAIYLIFLLILWTISRVPIKT
>NZ_CP040094.1|WP_174711291.1|5036529_5037975_-|deoxyribodipyrimidine-photo-lyase,-8-HDF-type
MSDLILFWHRRDLRISDNTGLAAAKQQSPKVVGVFCLDPHILERDDVAPVRVTYMIGCLQKLQERYAQVGSQLLILHADPVQAIPALAEAINAKAVFWNWDVEPYSQERDRTVINALKEKGIEFLNQNWDQILNSPDDIRTGGNSPYTVYTPFWKNWITKPKANPVETLQNVEGLTEAEQEIAKLAGSLTLPSAKDLGFIWDEQLIISPGEAAAQERLEEFTNKAITEYQEQRNFPGVDGTSQLSAALKFGVIGIRTVWQATIEALENSRSEETAVNIRTWQQELAWREFYQHAMYNFPELADGAFRDTFKNFPWETNEEHFQAWCEGRTGYPIVDAAMRQMNESGWMHNRCRMIVASFLTKDLLINPQLGEKYFMKHLIDGDLSANNGGWQWSASSGMDPKPVRIFNPASQTQKFDPEGEYIRQWVSELRSVDTEYLVTGKIPPLERHAVGYPDPIVDHKIQQNQFKLRYQQQKNISGGE
>NZ_CP040094.1|WP_174711292.1|5038167_5038320_+|hypothetical-protein
MPSLRDAARTTNALLATIRLCAAGTRFSCGDVLRTDLGGMKGLRLRQKLQ
>NZ_CP040094.1|WP_174711293.1|5043188_5044577_+|hypothetical-protein
MRSNADVRGGTITIDTERLRLSNGGNISTSVLIGGKGQGGNLVVRATDSIDITGVGGELLYSSHLAPSGLFAELQTGGIGSGGSIDVTIGRLNLSNQGEISATTFNQGNAGNIGINAEKIDLRGSSRIITQVDSEAKGNAGNINIKTQLLNVQEESQISSGTRGNGNAGNLTVKADNIILTGSDSESASSLTSSVDEKANGQGADIDITTNRLIVRDDAEIVSGSLGTGDAGNIRIKANFIEILGKGSAIASLTNAGNGGDITLDIADLLLLRDRGLISTTAGRSQVGGNGGNININSKFIVAIPEENSDISANAYTGTGGKVKINSQGIFGIEARSQPTDKSDITASSQLGVSGFTDINAPDTSSIQNSFTEASPNLIDTNALIANSCISRSSKQGGTFFITGSGALRNSPGNGLISVYSTGEVRNVEPTSRAWKKGDPIIEAEGVYRLANGQLLLSRGCQ
>NZ_CP040094.1|WP_174711294.1|5044622_5045525_+|uroporphyrinogen-III-synthase
MLILDRIELISFIHKQMHIQSTQINMLTPSRELPLYSKRILVTAPRNYACRLSEQIIKQGGLPVLMPTIEICYLSNYTNLDAALNRIAEFDWIVFTSRNGITAFFHRMNDLNIPVSLVQKCQLCALGKDAESLLYFCGKVDLIPTESSPGGIVAELAKMPQIQNQKVLIPAPEVVGLPEPDVVPNLITDLQQLGIEVTRVPTYITQGLDTSIYSVELNQMRQGTIDVIAFSSTAEVESFLTMVNSQSDYERCIIACFGPYTTANARKLGVDVSIVSRDYSSFEGFAEAIAEFFTLTSNSD
>NZ_CP040094.1|WP_174711295.1|5045628_5045928_+|2Fe-2S-iron-sulfur-cluster-binding-domain-containing-protein
MATYKVTLKTPDEEKTIEVSEDDYILEIANEENEMDLPYSCNAGSCSTCAGKLVSGTVDQSDQNFLDDDQIDAGWVLTCVAKPTSDCVILTHQEDELNG
>NZ_CP040094.1|WP_174708137.1|5046170_5047193_+|IS4-family-transposase
MIINSFPKIVKDILKSLPKNDYPVLNSRLFFECWLSYALDNSLTSMRDLFNRLNNNCFEVDISTFSKANLHRSQKPFQEIYQKLNELVQKKVQKKLHNKYAICPIDSTIITLTSKLLWVLGHHQVKLFSSLNLSTGSPEDNFINFGHDHDYKFGSKMMSSLPINAVGVMDRGFAGLKFIQELVQENKYFVLRIKNNWKLEFDGSNGLVKVGASDDAQAYRVINFCDLETKTEFRLVTNLPESGDAAVHDDEIRDIYRLRWGVELLWKFLKMHLKLDKLITKNVNGITIQIYVSLIAYLILQLLSIPEQWGHTLLDKFRYLQSCMCQKISYVHWFEEMMFC

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Crispr_ID: NZ_CP040094_25

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040094_25

5112598-5113730

TypeV-U2

N:A

Consensus_repeat	Method
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT	PILER-CR
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT	CRISPRCasFinder
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT	CRT

15 spacers

csx3

The CRISPR arrays of NZ_CP040094_25

>merge|NZ_CP040094|25|5112598-5113730|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAATCAAATCATTTTAAAAGTCTAGGTTTGATTAACTAATCAGTTTCAATCCCTAATAGGGATTTTGATAAATTGCAATCTTTAACACAAGCGTAGTTGTTAGCGAGTGGGAAGGTTTCAATCCCTAATAGGGATTTTGATAAATTGCAATCTTTCTGAGGTTAGCGCAATCGCGTGCTGTCTGTTACTTTTGTTTCAATCCCTAATAGGGATTTTGATAAATTGCAATTTTTGGCACAGTTGGTACATTGCGTGATTGATAATAAAGTTTCAATCCCTAATAGGGATTTTGATAAATTGCAATATGGAACAAAGCGCAAAACCGCAAAGTTGATTGTTGTTTCAATCCCTAATAGGGATTTTGATAAATTGCAATTCCTTGGTTGGAATGCACCACGGTTGCACACTGCAAATGTTTCAATCCCTAATAGGGATTTTGATAAATTGCAATCCGTTGTCCTCGTACACCACTCCAACAAACTAGGAGTTTCAATCCCTAATAGGGATTTTGATAAATTGCAATAGAAGGGTTAGGCAGCTAAAACTTCAGTCTCCTCGTTTCAATCCCTAATAGGGATTTTGATAAATTGCAATCTCAAGATAGCTACCGAAACAAATTAGCAGCCGTTTCAATCCCTAATAGGGATTTTGATAAATTGCAATGCGTAGAAGCGTATTTCCACAGTCACAAAGCAATGTTTCAATCCCTAATAGGGATTTTGATAAATTGCAATTCTAAATAACGAAACCAGCAACCTTCCCAATTGCAAGTTTCAATCCCTAATAGGGATTTTGATAAATTGCAATTTGATTCGTCAATTTCCCACTTGTACCTAAGAGAAGTTTCAATCCCTAATAGGGATTTTGATAAATTGCAATCATACCCCCCCTTATTCTGGAAGTGTTACTTTCTACTGTTTCAATCCCTAATAGGGATTTTGATAAATTGCAATTTTGCGCTATTCCGTTTATCAGCGATGTTACGAAGTTAGTTTCAATCCCTAATAGGGATTTTGATAAATTGCAATCACCTCGTGACAATCCACATTGTTACTCTGGCTGGGTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT

>NZ_CP040094|25|11|5112598-5113730|PILER-CR
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT	CAAATCATTTTAAAAGTCTAGGTTTGATTAACTAATCA
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT	CTTTAACACAAGCGTAGTTGTTAGCGAGTGGGAAG
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT	CTTTCTGAGGTTAGCGCAATCGCGTGCTGTCTGTTACTTTT
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT	TTTTGGCACAGTTGGTACATTGCGTGATTGATAATAAA
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT	ATGGAACAAAGCGCAAAACCGCAAAGTTGATTGTT
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT	TCCTTGGTTGGAATGCACCACGGTTGCACACTGCAAAT
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT	CCGTTGTCCTCGTACACCACTCCAACAAACTAGGA
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT	AGAAGGGTTAGGCAGCTAAAACTTCAGTCTCCTC
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT	CTCAAGATAGCTACCGAAACAAATTAGCAGCC
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT	GCGTAGAAGCGTATTTCCACAGTCACAAAGCAAT
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT	TCTAAATAACGAAACCAGCAACCTTCCCAATTGCAA
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT	TTGATTCGTCAATTTCCCACTTGTACCTAAGAGAA
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT	CATACCCCCCCTTATTCTGGAAGTGTTACTTTCTACT
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT	TTTGCGCTATTCCGTTTATCAGCGATGTTACGAAGTTA
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT	CACCTCGTGACAATCCACATTGTTACTCTGGCTGG
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT

>NZ_CP040094|25|24|5112598-5113730|CRISPRCasFinder
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT	CAAATCATTTTAAAAGTCTAGGTTTGATTAACTAATCA
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT	CTTTAACACAAGCGTAGTTGTTAGCGAGTGGGAAG
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT	CTTTCTGAGGTTAGCGCAATCGCGTGCTGTCTGTTACTTTT
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT	TTTTGGCACAGTTGGTACATTGCGTGATTGATAATAAA
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT	ATGGAACAAAGCGCAAAACCGCAAAGTTGATTGTT
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT	TCCTTGGTTGGAATGCACCACGGTTGCACACTGCAAAT
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT	CCGTTGTCCTCGTACACCACTCCAACAAACTAGGA
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT	AGAAGGGTTAGGCAGCTAAAACTTCAGTCTCCTC
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT	CTCAAGATAGCTACCGAAACAAATTAGCAGCC
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT	GCGTAGAAGCGTATTTCCACAGTCACAAAGCAAT
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT	TCTAAATAACGAAACCAGCAACCTTCCCAATTGCAA
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT	TTGATTCGTCAATTTCCCACTTGTACCTAAGAGAA
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT	CATACCCCCCCTTATTCTGGAAGTGTTACTTTCTACT
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT	TTTGCGCTATTCCGTTTATCAGCGATGTTACGAAGTTA
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT	CACCTCGTGACAATCCACATTGTTACTCTGGCTGG
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT

>NZ_CP040094|25|9|5112598-5113730|CRT
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT	CAAATCATTTTAAAAGTCTAGGTTTGATTAACTAATCA
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT	CTTTAACACAAGCGTAGTTGTTAGCGAGTGGGAAG
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT	CTTTCTGAGGTTAGCGCAATCGCGTGCTGTCTGTTACTTTT
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT	TTTTGGCACAGTTGGTACATTGCGTGATTGATAATAAA
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT	ATGGAACAAAGCGCAAAACCGCAAAGTTGATTGTT
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT	TCCTTGGTTGGAATGCACCACGGTTGCACACTGCAAAT
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT	CCGTTGTCCTCGTACACCACTCCAACAAACTAGGA
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT	AGAAGGGTTAGGCAGCTAAAACTTCAGTCTCCTC
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT	CTCAAGATAGCTACCGAAACAAATTAGCAGCC
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT	GCGTAGAAGCGTATTTCCACAGTCACAAAGCAAT
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT	TCTAAATAACGAAACCAGCAACCTTCCCAATTGCAA
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT	TTGATTCGTCAATTTCCCACTTGTACCTAAGAGAA
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT	CATACCCCCCCTTATTCTGGAAGTGTTACTTTCTACT
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT	TTTGCGCTATTCCGTTTATCAGCGATGTTACGAAGTTA
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT	CACCTCGTGACAATCCACATTGTTACTCTGGCTGG
GTTTCAATCCCTAATAGGGATTTTGATAAATTGCAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040094.1\|WP_174711329.1\|5104421_5105294_-\|3-deoxy-7-phosphoheptulonate-synthase	unknown	unknown	gnl\|CDD\|184028
NZ_CP040094.1\|WP_174711339.1\|5121277_5122333_+\|3-deoxy-7-phosphoheptulonate-synthase	unknown	unknown	gnl\|CDD\|237190
NZ_CP040094.1\|WP_174711341.1\|5124230_5124956_-\|J-domain-containing-protein	unknown	unknown	gnl\|CDD\|197617
NZ_CP040094.1\|WP_174711340.1\|5123166_5124225_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|271177
NZ_CP040094.1\|WP_174711330.1\|5106749_5107415_+\|pentapeptide-repeat-containing-protein	unknown	unknown	gnl\|CDD\|224276
NZ_CP040094.1\|WP_174711338.1\|5119418_5121077_+\|alpha-amylase-C-terminal-domain-containing-protein	unknown	unknown	gnl\|CDD\|200488
NZ_CP040094.1\|WP_174711336.1\|5118068_5118371_-\|acylphosphatase	unknown	unknown	gnl\|CDD\|237713
NZ_CP040094.1\|WP_174711327.1\|5099183_5102534_-\|efflux-RND-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|182501
NZ_CP040094.1\|WP_163936261.1\|5106172_5106667_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174711337.1\|5118720_5119098_+\|DUF1823-family-protein	unknown	unknown	gnl\|CDD\|370156
NZ_CP040094.1\|WP_174711342.1\|5125396_5125939_-\|HAD-IIIA-family-hydrolase	unknown	unknown	gnl\|CDD\|319806
NZ_CP040094.1\|WP_174711326.1\|5097938_5098562_-\|Uma2-family-endonuclease	unknown	unknown	gnl\|CDD\|368559
NZ_CP040094.1\|WP_174711331.1\|5108234_5108840_+\|DUF4360-domain-containing-protein	unknown	unknown	gnl\|CDD\|372992
NZ_CP040094.1\|WP_174711335.1\|5114691_5114871_-\|high-light-inducible-protein	unknown	unknown	gnl\|CDD\|177653
NZ_CP040094.1\|WP_174711332.1\|5109422_5110280_+\|DUF72-domain-containing-protein	unknown	unknown	gnl\|CDD\|224714
NZ_CP040094.1\|WP_174711334.1\|5111321_5112383_+\|ribosome-small-subunit-dependent-GTPase-A	unknown	unknown	gnl\|CDD\|234988
NZ_CP040094.1\|WP_174711333.1\|5110565_5111006_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174711328.1\|5102657_5104103_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
NZ_CP040094.1\|WP_174713734.1\|5125014_5125209_-\|hypothetical-protein	csx3	mkCas0115_csx3_CAS-I:CAS-III	gnl\|CDD\|370583
NZ_CP040094.1\|WP_114080697.1\|5114075_5114399_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP040094.1\|WP_174711329.1\|5104421_5105294_-\|3-deoxy-7-phosphoheptulonate-synthase	gnl\|CDD\|184028	PRK13398, PRK13398, 3-deoxy-7-phosphoheptulonate synthase; Provisional.	7.02249e-173
NZ_CP040094.1\|WP_174711339.1\|5121277_5122333_+\|3-deoxy-7-phosphoheptulonate-synthase	gnl\|CDD\|237190	PRK12755, PRK12755, phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional.	0
NZ_CP040094.1\|WP_174711341.1\|5124230_5124956_-\|J-domain-containing-protein	gnl\|CDD\|197617	smart00271, DnaJ, DnaJ molecular chaperone homology domain.	4.716e-08
NZ_CP040094.1\|WP_174711340.1\|5123166_5124225_+\|hypothetical-protein	gnl\|CDD\|271177	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain. Rci protein is a tyrosine recombinase specifically involved in Shufflon type of DNA rearrangement in bacteria. The shufflon of plasmid R64 consists of four invertible DNA segments which are separated and flanked by seven 19-bp repeat sequences. RCI recombinase facilitates the site-specific recombination between any inverted repeats results in an inversion of the DNA segment(s) either independently or in groups. HP1 integrase promotes site-specific recombination of the HP1 genome into that of Haemophilus influenza. Bacteriophage Hp1_like integrases are tyrosine based site specific recombinases. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	5.92973e-17
NZ_CP040094.1\|WP_174711330.1\|5106749_5107415_+\|pentapeptide-repeat-containing-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	1.65866e-27
NZ_CP040094.1\|WP_174711338.1\|5119418_5121077_+\|alpha-amylase-C-terminal-domain-containing-protein	gnl\|CDD\|200488	cd11350, AmyAc_4, Alpha amylase catalytic domain found in an uncharacterized protein family. The Alpha-amylase family comprises the largest family of glycoside hydrolases (GH), with the majority of enzymes acting on starch, glycogen, and related oligo- and polysaccharides. These proteins catalyze the transformation of alpha-1,4 and alpha-1,6 glucosidic linkages with retention of the anomeric center. The protein is described as having 3 domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a loop between the beta 3 strand and alpha 3 helix of A; C is the C-terminal extension characterized by a Greek key. The majority of the enzymes have an active site cleft found between domains A and B where a triad of catalytic residues (Asp, Glu and Asp) performs catalysis. Other members of this family have lost the catalytic activity as in the case of the human 4F2hc, or only have 2 residues that serve as the catalytic nucleophile and the acid/base, such as Thermus A4 beta-galactosidase with 2 Glu residues (GH42) and human alpha-galactosidase with 2 Asp (GH31). The family members are quite extensive and include: alpha amylase, maltosyltransferase, cyclodextrin glycotransferase, maltogenic amylase, neopullulanase, isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase, 4-alpha-glucotransferase, oligo-1,6-glucosidase, amylosucrase, sucrose phosphorylase, and amylomaltase.	2.60242e-158
NZ_CP040094.1\|WP_174711336.1\|5118068_5118371_-\|acylphosphatase	gnl\|CDD\|237713	PRK14423, PRK14423, acylphosphatase; Provisional.	4.9791e-52
NZ_CP040094.1\|WP_174711327.1\|5099183_5102534_-\|efflux-RND-transporter-permease-subunit	gnl\|CDD\|182501	PRK10503, PRK10503, MdtB/MuxB family multidrug efflux RND transporter permease subunit.	0
NZ_CP040094.1\|WP_174711337.1\|5118720_5119098_+\|DUF1823-family-protein	gnl\|CDD\|370156	pfam08853, DUF1823, Domain of unknown function (DUF1823). This presumed domain is functionally uncharacterized.	1.6137e-79
NZ_CP040094.1\|WP_174711326.1\|5097938_5098562_-\|Uma2-family-endonuclease	gnl\|CDD\|368559	pfam05685, Uma2, Putative restriction endonuclease. This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. A small number of member proteins also contain pfam02861 domains that are involved in protein interactions. Solutions of several structures for members of this family show that it is likely to be acting as an endonuclease.	8.80999e-34
NZ_CP040094.1\|WP_174711331.1\|5108234_5108840_+\|DUF4360-domain-containing-protein	gnl\|CDD\|372992	pfam14273, DUF4360, Domain of unknown function (DUF4360). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 200 and 228 amino acids in length. There is a conserved GCP sequence motif near the N-terminus.	4.45134e-57
NZ_CP040094.1\|WP_174711335.1\|5114691_5114871_-\|high-light-inducible-protein	gnl\|CDD\|177653	PLN00014, PLN00014, light-harvesting-like protein 3; Provisional.	3.44297e-05
NZ_CP040094.1\|WP_174711332.1\|5109422_5110280_+\|DUF72-domain-containing-protein	gnl\|CDD\|224714	COG1801, COG1801, Uncharacterized conserved protein [Function unknown].	8.09463e-78
NZ_CP040094.1\|WP_174711334.1\|5111321_5112383_+\|ribosome-small-subunit-dependent-GTPase-A	gnl\|CDD\|234988	PRK01889, PRK01889, GTPase RsgA; Reviewed.	0
NZ_CP040094.1\|WP_174711342.1\|5125396_5125939_-\|HAD-IIIA-family-hydrolase	gnl\|CDD\|319806	cd07503, HAD_HisB-N, histidinol phosphate phosphatase and related phosphatases. This family includes the N-terminal domain of the Escherichia coli bifunctional enzyme histidinol-phosphate phosphatase/imidazole-glycerol-phosphate dehydratase, HisB. The N-terminal histidinol-phosphate phosphatase domain catalyzes the dephosphorylation of histidinol phosphate, the eight step of L-histidine biosynthesis. This family also includes Escherichia coli GmhB phosphatase which is highly specific for D-glycero-D-manno-heptose-1,7-bisphosphate, it removes the C(7)phosphate and not the C(1)phosphate, and this is the third essential step of lipopolysaccharide heptose biosynthesis. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	2.69413e-20
NZ_CP040094.1\|WP_174713734.1\|5125014_5125209_-\|hypothetical-protein	gnl\|CDD\|370583	pfam09620, Cas_csx3, CRISPR-associated protein (Cas_csx3). This entry is encoded in CRISPR-associated (cas) gene clusters, near CRISPR repeats, in the genomes of several different thermophiles: Archaeoglobus fulgidus (archaeal), Aquifex aeolicus (Aquificae), Dictyoglomus thermophilum (Dictyoglomi), and a thermophilic Synechococcus (Cyanobacteria). It is not yet assigned to a specific CRISPR/cas subtype (hence the x designation csx3).	0.00286645
NZ_CP040094.1\|WP_174711328.1\|5102657_5104103_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	2.60089e-68

>NZ_CP040094.1|WP_174711334.1|5111321_5112383_+|ribosome-small-subunit-dependent-GTPase-A
MNLDYLGWSDFFARSFEPYRLQGFSVARVAIEYRNTYTLYSEEGELSAEVAGKLRHRASQPQDFPAVGDWVVISLRESERRATINEILPRKSKFSRKTVGSKTEEQIVAANIDTVFLVSGLDGDFNPRRVERYLILAWESGANPVVVLNKADLCNSLEEYLAQVEAVALGVPIVVLSATNHQGLDGLKPYLQPGQTVALLGSSGVGKSTITNQLQGTSVQMVQPVRRGDDRGRHTTTHRELILLSTGGLIIDTPGMREIQIWAGDEGLQETFTDIETLAQKCHFRNCQHNNEPGCGVQQALAEGELDYSRFLSYQKLQKELDYLTRKQDQRMQLAEKERWKKIHKAMRNHHKR
>NZ_CP040094.1|WP_174711333.1|5110565_5111006_+|hypothetical-protein
MSRLLYESSVSYKGYLIIPLVFGKVDNYDIYSYKLLSDIGNRSQFHKAENPAGIYGSGVSNIIDIAKEHIDQNSDFVNQRDYFKSRYIYRNHLIIIFQEGDKCFYDHYPPELLNNIAAPKLFKSEYECLSWIKQGLDGRHVRQRTN
>NZ_CP040094.1|WP_174711332.1|5109422_5110280_+|DUF72-domain-containing-protein
MNFFIGCAVWAYKGWVGELYPQGTRTADFLHLYSRRFTTVEGNTTFYAVPNQQTVTRWAAETPAGFEFCLKLPRDITHQGLLQPYIPAALKFLEGMRPLGKRLGPIFAQLPPSYAPALLEDLTSFLEAWPRTDAPLALEVRHPDWFREPHASNLTALLQKLGVGRVLLDSRPIYTGDDDSQLQSERRKPKLPLQLSVTAPFTLIRFISHPNLLVNQPFMEEWVRQIQQWLQAGVRIYFFIHCPIEARSPNIARHFQQLLEQSDTPVPPLPWNNLEHPPNQLSLWS
>NZ_CP040094.1|WP_174711331.1|5108234_5108840_+|DUF4360-domain-containing-protein
MNNQNYKTTSINFIKSFLAAATLITASVGPAFANDKVEIVGAEYGGNGCPEGSASVSVSPDGQELSILFDKFIAVGNKAEERRKSCNLSIPIKVPQGFQISLYDADYRGYVAPSTIGRLRAEYFFAGQRGPVFSRTFNGESDYNVRDQLVTVADVWSRCGDSVNMRVNAAMTASGQGMATVDSFDLAHRGLVYHVKYRQCR
>NZ_CP040094.1|WP_174711330.1|5106749_5107415_+|pentapeptide-repeat-containing-protein
MSDLERYYRILELEPGATLEEVNQAYKDLVFVWHPDRIPKENLRLQQKAQDKLKAINEAREKLRSLKTKHQTISNSPSPSPSPSYQQQTSPQKTQPPPKQNSDLSGKDYSRANLSNKDLSGRNLSYANLSGANLSDTFMHKVNLRGANLSEANLFRANLLLADLREANLRGANLIGADLSGTDLRGADLTGARIRSGERLLVKLIGANLAGAIMPDGAIYQ
>NZ_CP040094.1|WP_163936261.1|5106172_5106667_+|hypothetical-protein
MPSSKILAQSFDYYGVYPCPVCRIGKISHMPLMEAMACDFCQEIFTVNLEIQQIKMPSRQPPLTWRWNGFSWTEGQLEGVELGWGYGLAAAVFVILPTTLIGIVAYYFPADLKEPITWTPYIWTVLTFLSHLSIIVWIVIEIYQIPVAAYLRAIARWRNREMER
>NZ_CP040094.1|WP_174711329.1|5104421_5105294_-|3-deoxy-7-phosphoheptulonate-synthase
MINAKLAAQSHPNHQTIVKISEKVAFGGEELVIIGGPCTVESLEQMEIVAQKLSTASIQGLRGGVYKPRTSPYAFQGMGEEGLRILARVRSHYNMPVVTEVMSISQIEVVAAHADMLQVGSRNMQNFDLLKALGQAGKPILLKRGLAATIEEFVMAAEYILSHGNHDVVLCERGIRSFDDYTRNVLDLGAVAALKQITHLPVIVDPSHAVGKRELVAPVARAAIACGADGLIIECHPQPEKSVSDARQALSLEDMVRLVDSLKPVAKAVGRNISSNVGAGLSPAPIFCAA
>NZ_CP040094.1|WP_174711328.1|5102657_5104103_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MCFPFPQIVNMRRLVSIQTIKPSSLAAQTIFSFHNVIQRGRFSLLILGLTYLCAACNASEAQPSGKEAGKKRAVPVVVATATQKTIPIQLAATGTVEAYSTVSVKSQVGGQLTGVYFQQGQNVKKGDLLFKIDSRPLQAALMQANAAKAKDLAQVKQAQANVLKAIAQVNQAKANVVKDKSQATNANVQAQRYASLLKQGAISKEQSEQYQTTAAAQQATVQADQEGVANAQAAIAAAQADVQNAQAVVVADEAAIDNAKVQLSYTSIYSPIAGRTGSLKLNQGNLVEANATDPLITISQIHPIYVNFSIAQRLLPDIKKYSANNGKLEVDALPPKDAGRPVRGELTFVDSGVNTQTGTIQLKGTFANADDRLFPGQFVNVVLKLSEEPNAITVPSQAVQSGQKGQFVYVIKPDKTAEMRAITVGDTVGNETVIQQGVKPGEQVVIDGQFNLVPDATVQVKPEVGSRGAGGQEAGGAGGAR
>NZ_CP040094.1|WP_174711327.1|5099183_5102534_-|efflux-RND-transporter-permease-subunit
MNISELFIRRPIMTTLVMLGILIFGLISYQQLPVSDLPNVDYPTLQVTANLPGASPETMAASVATPLEQQFSSIAGLSSMNSTSSLGTTQLTLQFDLNRDIDGAAQDVQSAIAKGAKQLPTNMPNPPSYRKVNPADQPVLYISLNSSILPLSTVDKYAETLLAQRLSMVDGVAQVQVFGSQKYAVRIQLDPEALSVKGIGIDEVADAIANGNVNLPTGTLYGKQQNSTIQANGQLNDAASYRSLSVAYQNGAPVQLGELGQVLDSVENDKIASWYFPVKKESKGAEEQGSRGAGEQRSRGAGEKSSIQNSGVRAIVLAIQRQPGTNTVQVVDAIKKLLPSFRTQIPAAVNMDILYDRSQSIRESVDDVQFTLLLTIALVVLVIFLFLRNISATVIPSLAVPLSIVATFGVMVLLGFSLDNLSLMALTLSVGFVVDDAVVMLENIVRHMEMGESRMEAALNGSREIGFTILSMTISLVAVFIPILFMEGILGRLFREFAVTISVAILVSGVISLSLTPMLCSRFLSPPHHEQESEGDDEQGSRGAGEAGEQGGEGEILNSQSRVPSPESPVPTPQSRIKNFNRRLYNFSENVFNVILGGYDWSLKKSLKYHRTTMVISGAILVATVYLFIIVPKGFVPNADVGQITATTQASEDISFDEMVKHQQAVAAIAYRDPNVDSINSSVGAGGPNASANAGRLLIELKPRHERSLSADEVVQELRPKLSVVPGIKVFLQNPPAINVGGQQTKAQYQFTLQTPNIQELYQYAPVLEEKLRSLSDLQDVNSDLQIKNPQVKVDINRDQASALGLTANQIETALSNAYGTRQVSTIYAPDSQYQVIMGVEPKYQQNANALDLLSVRAPSGQLVPLNAIATLSKDVGPLTINHKGQLASVTFSFNLKPGVSLGNVTGKIEELARQTLPPTISTGFQGSAQAFQSSIQGLGLLLLVAILVIYIVLGILYENFIHPLTILSSLPSAGFGAILTLLLFQVDLNIYAFVGIILLVGIVKKNGIMMVDFAIVARHNGKTPYDAIYEACLVRFRPIMMTTMAALMGTLPIALGLGAGADTRRPLGLAVVGGLVFSQFLTLYLTPVFYTYMESWQTKLKKRSWRKQPILHSPD
>NZ_CP040094.1|WP_174711326.1|5097938_5098562_-|Uma2-family-endonuclease
MTQALRKLITFDEFVAQYPDNPQRRYELHDGVIVEMAQPTGDHEEVTGFLATKITLEYSRLNLPYFIPKTVFVKPLENESAYSPDVLILNQPNLINEPLWKKTSTVSLAASIPLVVEVVSTNWRDDYHKKYADYEEMGIPEYWIVDYAALGGREFIGKPKQPTILVCCLEEGEYLINKFRGNDRIQSPTFPELNLTAEQIFRVGIVS
>NZ_CP040094.1|WP_114080697.1|5114075_5114399_-|hypothetical-protein
MEIPQRVSVRYKDASFNSNEIRLRTFRLGLQIWEEQTKPRKTELYQFISSCLKQVDRQDRFMFSLLFIELTDMIRNSSLERGTKEVLIKTAFREFACAITDFEDVGK
>NZ_CP040094.1|WP_174711335.1|5114691_5114871_-|high-light-inducible-protein
MTGFKNPAPTVSEDPNAVRFGFTPQSENWNGRLAMIGFLSAILIEAFSGQGLLHFWGIL
>NZ_CP040094.1|WP_174711336.1|5118068_5118371_-|acylphosphatase
MQNSTAPPKIIRAHVFISGRVQGVGYRYSTVDTARQLGLTGWVRNLPDNRVEAVFEGARQVVDDMVRWCHSGPPAAVVKDVVVEYEVPEGLRGFEVKRVE
>NZ_CP040094.1|WP_174711337.1|5118720_5119098_+|DUF1823-family-protein
MSNLPPLNTATIWAILDDKIDDATVNQLLWHYLGYRYDSSTAQWDISQVEPEWQEDYPQPPNFIESRPATVKLTRSIPAENKQMLKEKLGFKGYKIGEFGPRQTRRATVANWFLSYLQQTNSKIE
>NZ_CP040094.1|WP_174711338.1|5119418_5121077_+|alpha-amylase-C-terminal-domain-containing-protein
MAKPIEFNLFAPYNKGAALIGSFSDWQEIPMGKSDDGYFLTSVELEDGVHKYKFRIQSNSWFFEPEQWVDVTDPYATDIDELSGKDDSVIHVKDGERITDTYVWQHDDKPLPADHELVIYELHVGDFSGGEDDPYARGKYKHVIEKLDYLGELGINAIELMPLKEYPGDYSWGYNPRHFFATESSYGSTAELKKLVDECHARGIRVILDGIYNHSEASAPLTQIDHDYWYHHEPRDPDNNWGPEFNYEHYDEKLDIKPAWKFIGEAIRFWISEYHLDGIRYDAARQIANYDFMHWIVQEAKKTAGAKPFYNVAEHIPETTSITNVDGPMDGCWHDSFYHCILEHICGDTFDLERLKDVIDCKRQGFLGATNVVNYLTNHDHNHIMVELGNREIFDEEAFRRAKLGVAILMTAVGIPLIWMGEEFGEYKPKQPESSKIDWTLLGNDLNRSLFESYKGLTNLRKSNHALYTENIDFIHENPEAKVLAYTRWNDEGSRVVVIANFSENFLAGYHVPNFPSAGTWHEWTGNYDVESGDDGIITDLGPYEAKVFVWQ
>NZ_CP040094.1|WP_174711339.1|5121277_5122333_+|3-deoxy-7-phosphoheptulonate-synthase
MHNKLFNTNIDNANIENDRILLTPNEIKSKLPLTQLAEQRVLAYRQEIEDILDFQDRRKFIVVGPCSIHDPKAALEYSERLKALSEQVKDKLLLIMRVYFEKPRTTVGWKGLINDPDMDDSFHVENGLLIARDLLLKITELGLPAGTEALDPIIPQYISELITWSAIGARTTESQTHREMASGLSMPVGFKNGTDGNIQVALNALQSARNPHNFLGINQNGQVSVFQTKGNGYGHVILRGGSQPNFDAANVKSVEDKLKQANLPPRIVIDCSHGNTNKDYKLQGAVLENIIQQIVDGNTSIVGMMLESHLYEGSQPITGKEELKYGVSVTDKCISWEETEKIILAAYEKLK
>NZ_CP040094.1|WP_174711340.1|5123166_5124225_+|hypothetical-protein
MGVSLRQRGDTLSLRATLPPRPGSEKTQPYQQDLALKMYANPAGMKAAEDKAIELAADIIKWKSGQNFPWNNWIEGKPKLGFTCQSWIDNFKAEFLERQEKFSPRTWKRHYQPMFNRLPSTAELTGDLLLRTVLSLPNDTWTRLRAASIYQQLAFHAGLEIDLRPYKGKYDHTDTIKNLPSDELIASVRDKITSPRWQWVYGMLSSYGLRPHEVFFATVEPKAPYKCHVAEGKTGARTVQPFYPQWVERWKLWEAKKPKTKQTEYGDLGKAVYLAMRRHFLEINEADFTPYDLRHCYAIRISVVFELPVTTSAKLMGHSVTEHLKTYQRHIDEKTNSRAVERAIARFDGVAP
>NZ_CP040094.1|WP_174711341.1|5124230_5124956_-|J-domain-containing-protein
MLITAYPLAWPPSQKRTPGDKRTSASYRVGFAKARDDLLDELRLSSADDVVISSNIPLRKDGKPLASFKEPIDPGIAVYFRSKGQSYVVCCDAWDKVKNNLRAIGEYISALRAIVNCQVSSVLPVLAKHAIENYVLRESGQPKSKSKKPSSSNSKKRKSQDSKSQQQPHTETKSRPHAKATASLGWREILGVPHESDFATVRSAYYGAARVHHPDGGIFPNEEKMKAINQAFEQAKLEYGK
>NZ_CP040094.1|WP_174713734.1|5125014_5125209_-|hypothetical-protein
MRGRLLKINGAQSISIAYHIAHKVAHLYGAVAIFDPKLSGYVVSITHDSEYKLGMVLSDEPIIV
>NZ_CP040094.1|WP_174711342.1|5125396_5125939_-|HAD-IIIA-family-hydrolase
MKLLILDLDNTVRRPKSGAKFISTPDDQEIIPGSARAIAHYKSQGFLIVGATNQGGVAAGHKQLEDAIQEQYQTLRLCPEIWCIYFCPDYEGQFCWFCTLDPEEISTPIHLGWAANYQGSFRKPGAGMLNAAIENGLGSKNPEHQILFVGDRDEDKGAAEAANVNFLWASDWWESGAANL

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Crispr_ID: NZ_CP040094_26

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040094_26

5297813-5297920

Orphan

N:A

Consensus_repeat	Method
ATAGAAGGTTTAAAAGCCGGGAAGAAACTTAAAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040094_26

>merge|NZ_CP040094|26|5297813-5297920|CRISPRCasFinder
ATAGAAGGTTTAAAAGCCGGGAAGAAACTTAAAGAACTAGATAAAGTCCAAGTCAACATTCTTGATGCTTTCATAGAAGGTTTAAAAGCCGGGAAGAAACTCAAAGAA

>NZ_CP040094|26|25|5297813-5297920|CRISPRCasFinder
ATAGAAGGTTTAAAAGCCGGGAAGAAACTTAAAGAA	CTAGATAAAGTCCAAGTCAACATTCTTGATGCTTTC
ATAGAAGGTTTAAAAGCCGGGAAGAAACTCAAAGAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040094.1\|WP_174711520.1\|5306030_5306270_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174708167.1\|5290388_5291726_+\|IS701-family-transposase	unknown	unknown	gnl\|CDD\|227946
NZ_CP040094.1\|WP_174711509.1\|5280833_5281310_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174711514.1\|5294579_5295302_-\|carbonic-anhydrase	unknown	unknown	gnl\|CDD\|239473
NZ_CP040094.1\|WP_174711508.1\|5276836_5277814_+\|PatU	unknown	unknown	unknown
NZ_CP040094.1\|WP_174711513.1\|5291759_5293334_+\|GAF-domain-containing-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
NZ_CP040094.1\|WP_174711511.1\|5284769_5284859_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372967
NZ_CP040094.1\|WP_174711520.1\|5305390_5305630_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174711516.1\|5299979_5302718_+\|peptidoglycan-binding-protein	unknown	unknown	gnl\|CDD\|239110
NZ_CP040094.1\|WP_174711510.1\|5281395_5282670_-\|proton-extrusion-protein-PcxA	unknown	unknown	gnl\|CDD\|235046
NZ_CP040094.1\|WP_174711521.1\|5306670_5306910_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174711520.1\|5306350_5306590_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174711512.1\|5285415_5289312_+\|serine/threonine-protein-kinase-PknK	unknown	unknown	gnl\|CDD\|226415
NZ_CP040094.1\|WP_174713745.1\|5278373_5280677_+\|DUF3488-domain-containing-protein	unknown	unknown	gnl\|CDD\|224224
NZ_CP040094.1\|WP_174711519.1\|5305070_5305310_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174711517.1\|5302735_5303530_-\|MinD/ParA-family-protein	unknown	unknown	gnl\|CDD\|223531
NZ_CP040094.1\|WP_174711521.1\|5305710_5305950_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174711518.1\|5303573_5304635_-\|DUF3365-domain-containing-protein	unknown	unknown	gnl\|CDD\|378734
NZ_CP040094.1\|WP_174711522.1\|5306990_5307230_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174708235.1\|5295534_5296601_+\|ISKra4-family-transposase	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP040094.1\|WP_174711512.1\|5285415_5289312_+\|serine/threonine-protein-kinase-PknK	gnl\|CDD\|226415	COG3899, COG3899, Predicted ATPase [General function prediction only].	0
NZ_CP040094.1\|WP_174713745.1\|5278373_5280677_+\|DUF3488-domain-containing-protein	gnl\|CDD\|224224	COG1305, COG1305, Transglutaminase-like enzymes, putative cysteine proteases [Amino acid transport and metabolism].	1.62682e-26
NZ_CP040094.1\|WP_174708167.1\|5290388_5291726_+\|IS701-family-transposase	gnl\|CDD\|227946	COG5659, COG5659, FOG: Transposase [DNA replication, recombination, and repair].	1.28236e-89
NZ_CP040094.1\|WP_174711517.1\|5302735_5303530_-\|MinD/ParA-family-protein	gnl\|CDD\|223531	COG0455, flhG, Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility].	2.60404e-47
NZ_CP040094.1\|WP_174711514.1\|5294579_5295302_-\|carbonic-anhydrase	gnl\|CDD\|239473	cd03378, beta_CA_cladeC, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.	8.64518e-79
NZ_CP040094.1\|WP_174711513.1\|5291759_5293334_+\|GAF-domain-containing-sensor-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	4.1947e-43
NZ_CP040094.1\|WP_174711511.1\|5284769_5284859_+\|hypothetical-protein	gnl\|CDD\|372967	pfam14218, COP23, Circadian oscillating protein COP23. This family includes the circadian oscillating protein COP23 from Cyanothece sp. (strain PCC 8801). The levels of this peripheral membrane protein display a circadian oscillation.	4.08078e-05
NZ_CP040094.1\|WP_174711518.1\|5303573_5304635_-\|DUF3365-domain-containing-protein	gnl\|CDD\|378734	pfam11845, DUF3365, Protein of unknown function (DUF3365). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 198 to 657 amino acids in length.	1.36522e-52
NZ_CP040094.1\|WP_174711516.1\|5299979_5302718_+\|peptidoglycan-binding-protein	gnl\|CDD\|239110	cd02619, Peptidase_C1, C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel structure with the active sites imbedded in the central channel. Some members of the C1 family are proteins classified as non-peptidase homologs which lack peptidase activity or have missing active site residues.	1.05167e-43
NZ_CP040094.1\|WP_174711510.1\|5281395_5282670_-\|proton-extrusion-protein-PcxA	gnl\|CDD\|235046	PRK02507, PRK02507, proton extrusion protein PcxA; Provisional.	0

>NZ_CP040094.1|WP_174708235.1|5295534_5296601_+|ISKra4-family-transposase
MTPEQKQALQKHIQAIAKILYEDTSKEKLTNLAAIEEAVRSQMQKHVMPEVGGFFIETITGTTAGYQRRLKSILGELAITSKQAIELEVAPSTQLSPYLETCCLRVSANVSYEDAASDIKYFTGIEVSHSSQQRLVHRQNFELPTPEQTIEELSVDGGNIRVRTPKGQICAWLGYKAISLHHLGILGTSFQNNQIVIDWVNDQPLASPLTCIGDGHDGIWNIIDQLAPDAQRREILDWFHLIENLHKVGGSQKRLKQAQNLLWKGQVEATIALFTDCKGKQVQNFCRYLDKHRNRIINYEYYQAEEICSIGSGSVESAVKQVDRRTKISGAQWKRENVPQVLAHRCAYLNGLLSV
>NZ_CP040094.1|WP_174711514.1|5294579_5295302_-|carbonic-anhydrase
MSRINGFVGRRDFLKFASVVGIAATAFGDSFWNTEQTAIADIHPVSSNPVSPNEAIKRLLDGNQRFINQKRQYPDQSLEHLRLVANAQYPFAAILGCADSRVPAEIVFDQGLGDLFVVRVAGNVVSDTVIGSLEYSTTVLGSQLIVVLGHKRCGAVAEAIKNEPLPGRIGLIIEGIKPSVERVKLRTGDNMQNAVIANIQYQTEKLQESSTILAKLLSEGKLKIVGACYDIDTGKVNIIT
>NZ_CP040094.1|WP_174711513.1|5291759_5293334_+|GAF-domain-containing-sensor-histidine-kinase
MTEEGYCYSRWGAKAKILNLEKCYPQLLKPILEQQRFTLNPLETISLRGTSSSSCTNSTGSIAISDGLDFTSVLKAAIAISSSLELEQLIASLTRIIIENSGAKKAVLLLPEKDTWQVRAITFIEHKEMQTILESQSLDNFRDLPLNIIYYVKNTHQTVVIDNCKTDIPGLIGEYILQYQPKSIFCTPIINQRHLVGILYLENKLTQGVFSSARLRVIHLLSSQAAISLENARLYQQAGIALQDLQQAQLQIVQSEKMSALGNLVAGVGHEMNNPLGFIFATLQQAKPTLNDIVKHLNLYQNTLTNKSDEIKDHAEEIDLDYVLEDLPKMIDAMAVACDRLTNISTSLRTFSRADKDYKVPFNIHEGINSTILILKHRLKANEEHPAIEVITNYGDLPLVNCFPGQLNQVFMNIIANAIDVFEESNIGQTFAEIQANYNRITITTLKADKYVKISIADNGQGINEAVKQKIFDHLFTTKEVGKGTGLGLAIAKSIVVEKHDGSLDVDSTPGKGTEFVITLPILA
>NZ_CP040094.1|WP_174708167.1|5290388_5291726_+|IS701-family-transposase
MDVELQILKHLARDAQPTVAIIDEYCAEYKDLFKEVRNYECFKYLHLGIIAPIKRKSLPEIAKVVSINSAQSLHHFIAYSDWSANKLKSRRLDKLKKALNSQAITVVIDETGDRKKGKKTDYVARQYLGSVGKIDNGIVSVNAYGVYENVTFPLSFKVFKPKGTLKSGDKYKTKIELASEIITELINEGFNIELVLADSLYGESSKFIKKLNEYELAYVVAIRSNHGVWLPANQSVRANKWCKFERTFSNKKSEIRYIREIIYGKKRAITYWEITTDPETMPDNSTSFVMTNLQGNLKKTLGDLYGLRTWVEYGFRQCKQELGWTDYRLTNFQHIERWWEIIFCVYTMISLNSPAFLALNQSLQIETEVIGTSYVNCVDFSHHQQWNHNSGWKNTLNNLRLIVQPLLLFWLIYPWLDIFPNSHLLLGFNHLICAMNQFKPFFASG
>NZ_CP040094.1|WP_174711512.1|5285415_5289312_+|serine/threonine-protein-kinase-PknK
MFSSQVSIPGYQVSKELYNGSRTLVYQGYRETDQKPVVIKLLKNLYPTFSELVQFRNQYTITKNLNYPKIIQTYTLEVYQNVYILVMEDFGGISLKDYFANNHNVSSLNEFLQIAISLCDALDILSRHRIIHKDIKLANILINPETKQIKLIDFSIASLLPRETQTLISPNVLEGTLAYISPEQTGRMNRGIDYRADFYSLGITFYELLTGKLPFQSNDVMELVHCHIAKQPPLLGNSEEIPQVLCDIITKLMAKNAEDRYQSALGLKFDLEICLHQLNEIGRIESFSIAQRDVCDRFIIPDKLYGRETEVKTLLQAFERVSQGATEMMLVAGFSGIGKTAVVNEVHKPIVRQQGYFIKGKYDQFNRNIPFSAFVQAFRNLMAQLLTESDLQIQQWKTKILEAVGENGQVIIEVIPELSRIIGQQPPTTELSGTAAQNRFNLLFQKFTKIFTSDAHPLVMFLDDLQWADSASLMLMQLLMADTKHFLLIGAYRDNEVNPAHQLMLTLNDIQKTAATINTITLAALSQGQVNQLVADTLQCSENLAWTLSRLVAQKTQGNPFFATQFLKALHQDGVIEFNLELGCWQCDITQINQRSLTNDIVEFMALQLQKLPASTQGILKLAACIGNQFDLETLAIVSKQSKIETAVCLWNALQESLVLPQSEVYKFFVGLENQAVTPENSEIIGYKFLHDRIQQAAYSLIPSDQKQKTHLMIGQLLLQGLSEQEQQERIFDLVNQLNLGQGAIAEDDSLSNIATHEQKKQLARLNLQAGQKAKLSAAYQASQSYCTTGIDLLPATAWQTDYELMYSLHREGSEAAYLCGNFDLAEVLYGEALSHAQTPLDKAVIYRVQMTQYQLQGRNVEAIAMQRQSLQLLDWEMPTEQELIQASLDKEIAIVNRFLEQQTVESILNLPKMVDASIAEMLRILQILFYAAWLNGQSTLGLLVLAKMTTLSVQYGNSDMSPFSYAGYALIANAILKDLGTAYQFGEMAVQLCEQFDNADVRGMTNFLFAADIHSWSHPIREADTYYDNAYKYGMEAGNWLTVGFMIMQSGSDRLTYGKNLDELYAIAQAHADFLRRIKSLENLDALIVGVIQPIRNLLGLTKNLFSFDDDSFSEAEYLQKYSNTPYHLAWLYSVKIRHAYLFDHKATYPDLIPQLSIIENTISSHAKVPSSVFYVALMHLSLAEIASDEQERQFHWQALIPLEERLNSWAKACPENILHKCLLILAEKARLKGQKAEALDFYEQAIAQAQCQGYGYEEALANELAAKFFLNWGKEKAASDYIHEAYYSGYQSTSVQ
>NZ_CP040094.1|WP_174711511.1|5284769_5284859_+|hypothetical-protein
MSKWVSQNYFSQEWTVERRCQEVYQLEDK
>NZ_CP040094.1|WP_174711510.1|5281395_5282670_-|proton-extrusion-protein-PcxA
MKNLFTKTAELLHQNFQKYLRSLNNWFFNTPERALLEAQQAAQRIKNIEIEHFEGKKISSESVKYTETAMSYWQVYLDKNLTIIKFRLAEFQLSRGIVNISNSVLLEKLKVIDEVVEKYAIKDELISNSELLSNYKPLKVTQSEINKQSELSNIKRLPPNQKVRALPGSIGRTINKIKGDFSPQGEEEFVRNYRISKNKTKIGLRFLLTLIIVPLLTQILSKQFLVIPLLEKTRGENTSQIFINSDMEKEAIHELSNFQQNLRFESLLNNAPALSSEVIKEKIKDKAIEIAEEFNLKTNSAVSNVFADLISLISFSLIIVYSKREIVIVKSFIDTIVYGLSDSAKAFIIILFTDIFVGFHSPDGWEVLLEGFAEHLGLPASRNAIFLFIATFPVILNTIFKYWIFRYLSRLSPSALATLKEMDE
>NZ_CP040094.1|WP_174711509.1|5280833_5281310_-|hypothetical-protein
MDFESKANAPTSTDNIEFAQQTTNRKPLQVLRDTEALLRRPTVAILSPILPSKLSNKFQVTSSLADDSFKELAEIDLDTISDFELRPVRIRVGLSFVGFGALMILVLLLYLNTLHPELSTGEQIRQYWYQYVWFVSLGVAGMFMLGREAMRPMPKRRK
>NZ_CP040094.1|WP_174713745.1|5278373_5280677_+|DUF3488-domain-containing-protein
MNRFWRVPVGNFWRQNLQRSPLTEVEDSIPLRVLVLALVILGIGATDIAAETSFSFWALPLSVSGAIWSYYRRRDANVAVKFCIAIGMLMALGSFFGRLVGELNDTRLGLAELLIQLQVLHSFDTPRRKNLGYSIVIGLILLGVAATLSQTLAFAPVLLLFLAIALPTLVLDYRSRLGLQPLKTQKEKFNPKNSSTLNFKFLTLTFLLIVSLGLAIFAVLPRFPGYQLRNFPVSSAIQLKGNFTGRTIINPGYVRQGSGNNQGSGTGQVRSGEPGKVDNNFYYGFNSQINQNLRGEMKPKVVMRVRSQAEGFWRVLGFDRYTGKGWEVSRNEDVTTIKRSPWSYQIFLNPPLTTAKTQEIVQTYTVVADLPNLIPAMAYPKDIYFPTPMVAVDKEDGLRSPVELSEGLTYTVISEVPYRDRTKLGEASTKYPRDIKQHYLQIPPEITEKVQQRTEEILANYSREGVTKSSKSLDSAYEKALYLAQYLKQRYSLPQNPLDLPYLGEKDDLVEAFLFKYKGGYPDHFSTVLTVMLRSIGIPARLVAGFSSGEFNPFTGLYVVRNTDAYAMTEVYFPKYGWFAFDPIPNHPLIPPSVEDTQTFSVLRQLWHWVAGWLPSPVTGLLNNVFETIFKWVIRAIAWFLALFSQGWFGILTGLILVTTAAFFGWLGWGQWREWRNRRWLKKLPAMESLYQQMLQWTTQKGLGKHPAQTPLEYARGSYQHHPLATAEVIDEISQAYVGWRYGGHTPNLKRLRQRWQGIKNAGKADK
>NZ_CP040094.1|WP_174711508.1|5276836_5277814_+|PatU
MNSDSESSQYQYLGWLLTDDVKNNEQSVESEENDGVKKLINEATASKSSEPKLGVTPQTLQLGEIPTVQDRFQAVIKHRLQIQAQDHPPLFPWETQLIDYPDFVDEPSMTLVPTWGWMVQQSKLKLPCPLPERVFQQLLEQCQALVTSSVPLGAKLVQVVENFFPNESQALNDIAGLVLRSTYRSVGTLETLPNIQSDYSDLQPRQQMALSLLAAKQLLENLTLPLSATNPVVERQWLTTVGNLNIRVEYQSVGKLTKLLVQAELPVKGTLILRGSGTLAMATSSTSGYLSVELGCEQLNPTYTLEVEFPEIDQQPLLFVINPTA
>NZ_CP040094.1|WP_174711516.1|5299979_5302718_+|peptidoglycan-binding-protein
MAKKSTGWVPDYPDFRDYRMDEIDQKLTITVQDVQINDDDSQSSIEELFELLNSIKNGLKVEEPIKNTLDEKFKNFGQKISKGFKLINAKAIKEQIFLAPGCAGKEVYNLQRKLLKLSSYENKFEICIEEIKNLKKAFEELDYIEYGYFGKNTNEAVKLFKKIFSLASDDKVDSVVDKITLYTLNQVLEILENIKIETNYPDEVKKLGMFDEEIKKIQIKLNRLGYLNNLGENNGAIQGFFDYLTQDAVQEFQKQNCSQYNLEVDGIVDDNTNKALDSLAQNYNNQQKKAYGDEQVKKLQQLLRELGEFDGQVTGYCGLQTKIAIESFQAKYGLVVDGLVDSPKTLEVLNYLVLLKKQQQLVLPASSSIHISLYEIILRVFEIFEFKAEDFVSEKGFQVVTDSDKSDISQHQRVLKRSIDMMVKLVAQLISPLAQHRNLEKAVRDGLEKLDQYFNKSEYVNCIRKDNIELSRRMRYTQISFTKSNSYTVNKKSFQQDFLGKSSTFSPEENEKNLFKDWDFNPLSLYIALSTILNLKLSLKNIKETSEHKDIKDRITTSFNKIDNIFKSLKNLEVSLKNYNPPDQDEENSKNKHKNLRTIIQILPELQDEQNELQKNLEFQSDLQLLVQGNLQKCIIPKQKEGIDGKIVYLLMPEFVDLSFWCSPVEDQGSLDSCTAHAGVALMEYFEKRSFDRYVDASRLFLYKATRNLMHRQGDAGASLRETMKAMALFGVPPEEYWPYTEDNFDEEPTPFCYSFGQSYQTLKYFRLNPLGTTEDILLFRIKTALAAGFPCAFGFTMYYSIEDLNPSGHIPYPVKNDKVKGGHAVVAVGYDDHKIIENADGSRRSQGALLIRNSWGTDWGEGGYGWLPYDYVLEGLTNDWWSLLKSKWFETGHFGLGANNLGGGDPPNRPR
>NZ_CP040094.1|WP_174711517.1|5302735_5303530_-|MinD/ParA-family-protein
MSEIISIHSFRGGTGKSNVTSNLAALIARSGKRVGIVDTDIQSPGIHVLFGLEQERIRYTLNDYLWGRCQIEEAVYDVSAILKQKQTFFGRQGSVHLIPSSIKMSDISRILREGYDARRLNDGLHNLVRRLKLDYLLIDTHPGINEETLLSIILSDVLVLILRPDKQDYQGTAVAIDVARKLEVPKMLIVINKALPSLDFKELGKRVENTYKTPVAGILPVCEEMFELGSGGIFCLRYPDHSWTQKISAIAKQITGSGARLFAK
>NZ_CP040094.1|WP_174711518.1|5303573_5304635_-|DUF3365-domain-containing-protein
MFNRFKLATKFTLLLLLVFIGAIAVSGFALSHALEQKAEAEIGYRSQVIAETMNSVRNYTNTRINPLLTPMMGTQSTFIPESVPSFAAREVFENLRKNEEFKDFLYKDANLNPTNLRDKADVFEMELIEQFRNDPGLKNISGFRDSYDEKMFYNARPFSINNPTCLRCHSTPEVAPKSQIASYGSENGFGWKLNEILGTQIIYIPAKQVFEDAHRAFVLFISLFITIFAIMILLINYLLKRNVLQPLKPMAQLAQKISMNEISVEEAQEYDREKLTSIVQRHDELGQLGRVFQRMVHEISAREQQFKQQLHTLRIEVDEAKRAREVAEIAESKTFLKLQEEAKAIRNKRNTPN
>NZ_CP040094.1|WP_174711519.1|5305070_5305310_+|hypothetical-protein
MSDNIKPVELSAEELDNVAGGAFSFVDADNYNAIDQQAGATVIGPNGGISSLNTQQTAVSHQSLHEIKATGFFPTTLES
>NZ_CP040094.1|WP_174711520.1|5305390_5305630_+|hypothetical-protein
MSDNIKPVELSAEELDNVAGGAFSFVDADNYNALDQQIGETVLGPHGGIGSSTAQQTTVSHQSLHEIKATGFFPTTLEK
>NZ_CP040094.1|WP_174711521.1|5305710_5305950_+|hypothetical-protein
MSDNIKPVELSAEELDNVAGGAFSFVDADNYNALDQQIGETVLGPHGGIGSSTAQQTTVSHQSLHEIKATGLFPTTLEK
>NZ_CP040094.1|WP_174711520.1|5306030_5306270_+|hypothetical-protein
MSDNIKPVELSAEELDNVAGGAFSFVDADNYNALDQQIGETVLGPHGGIGSSTAQQTTVSHQSLHEIKATGFFPTTLEK
>NZ_CP040094.1|WP_174711520.1|5306350_5306590_+|hypothetical-protein
MSDNIKPVELSAEELDNVAGGAFSFVDADNYNALDQQIGETVLGPHGGIGSSTAQQTTVSHQSLHEIKATGFFPTTLEK
>NZ_CP040094.1|WP_174711521.1|5306670_5306910_+|hypothetical-protein
MSDNIKPVELSAEELDNVAGGAFSFVDADNYNALDQQIGETVLGPHGGIGSSTAQQTTVSHQSLHEIKATGLFPTTLEK
>NZ_CP040094.1|WP_174711522.1|5306990_5307230_+|hypothetical-protein
MSDNIKPVELSAEELDNVAGGAFSFVDADNYNALDQQIGETVLGPHGGIGSSTAQQTTVSHQSLHEIKATGLFPTTLES

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Crispr_ID: NZ_CP040094_27

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040094_27

5660078-5662236

Orphan

N:A

Consensus_repeat	Method
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	CRISPRCasFinder
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	CRT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	PILER-CR

29 spacers

The CRISPR arrays of NZ_CP040094_27

>merge|NZ_CP040094|27|5660078-5662236|CRISPRCasFinder,CRT,PILER-CR
TCAACCCTACCTAATAGGGATTTTGATGAATTGCAATGTTTGGCGTGTTCCAGATGTCTGAAGGCGTTCCGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAATAATCATAAACTCTGTAGTCCCTGTCCAGATTCGCGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAATTTAAATTGTGATTCAGCATAAATTTGATAAGATGCAAGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAATTCGAATCTCAAGTTACGCTGCTCAAACCGTAAACATTGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAATGAACCAGGTGCCTATTATGTAACAAATGCCAAGTGGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAATTCCTTATTGATTTCATGAATGGAAGAGTCAAATTTGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAATGATAAATGTACTCTTACCACCCTTGGCTCGATTGACAACAGGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAATGTTTTATCATCTCTGCATGATTTGTATTTCTTATGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAATTTGTGTTTTGCTGCATCTCCCGTAGTTTCTTTGTAAGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAATAATCTCGTAATATCCCCATGCTGAAAGGGGATTTTTGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAATTATTTGCTTTGGTATATTTGTCACCTTTTAAGATGGAGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAATATGTCCGCGCCAAATGGTCATTTTGGGGAAGTTTGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAATTTGAGCGATATATTTTTCACCATCGAAAGAAAAAGAGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAATTCGTACCCATTTATTGGTTTGGGAATCCTGATGGAGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAATTAGCTGGCCACCCTCCTCTAAAGACAATTGTTCCATGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAATTCAATCACTGCTAGCGGTTGAACCTACTGTGTCTCGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAATTTTATCTATGCCGTGGCCGCCCGTGGATAGCGACGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAATCAGGCTGCCTCTGGGGGTGGTGGGCTACTAACCGCTATATATATTGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAATCTTATGCGATTCCAAATCCAAACCCAAACCCAAATCCAGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAATCCCTTTGCAGTGGGGAGAGGAGGATGAAGATTTTTGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAATCTAGTTTTTCTCCCGGTTTTCCCCCCTGGATTTTAGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAATTTTTCTTTATATCTTTTGGGTAAAAGGGGGATTAAGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAATGTGCGATCGCCTTTTAAAATCGATTCCAACAAGTAAATTTTTGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAATAATTGTTGGTCAGTCATGGTAAGTTTTGGTTAGGTAGAGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAATTGGAGCGGTCTTCACGAGTATCTCCAATGTGGTTTTGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAATAGCCCAATTGCAATCCTCCCTTAGAGAATCCTTGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAATAATTTGTACTATCAAATAAATTTATGAGATTTTGGGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAATATTGATAGGGATTATAATCCCCAGAAAAGCTTTTTTGCGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAATGGGCAGCAGCATCAGCTTGAGTCTGAGCTAAAAGGTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT

>NZ_CP040094|27|26|5660078-5662236|CRISPRCasFinder
TCAACCCTACCTAATAGGGATTTTGATGAATTGCAAT	GTTTGGCGTGTTCCAGATGTCTGAAGGCGTTCC
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	AATCATAAACTCTGTAGTCCCTGTCCAGATTCGC
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TTAAATTGTGATTCAGCATAAATTTGATAAGATGCAA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TCGAATCTCAAGTTACGCTGCTCAAACCGTAAACATT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	GAACCAGGTGCCTATTATGTAACAAATGCCAAGTG
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TCCTTATTGATTTCATGAATGGAAGAGTCAAATTT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	GATAAATGTACTCTTACCACCCTTGGCTCGATTGACAACAG
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	GTTTTATCATCTCTGCATGATTTGTATTTCTTAT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TTGTGTTTTGCTGCATCTCCCGTAGTTTCTTTGTAA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	AATCTCGTAATATCCCCATGCTGAAAGGGGATTTTT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TATTTGCTTTGGTATATTTGTCACCTTTTAAGATGGA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	ATGTCCGCGCCAAATGGTCATTTTGGGGAAGTTT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TTGAGCGATATATTTTTCACCATCGAAAGAAAAAGA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TCGTACCCATTTATTGGTTTGGGAATCCTGATGGA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TAGCTGGCCACCCTCCTCTAAAGACAATTGTTCCAT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TCAATCACTGCTAGCGGTTGAACCTACTGTGTCTC
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TTTATCTATGCCGTGGCCGCCCGTGGATAGCGAC
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	CAGGCTGCCTCTGGGGGTGGTGGGCTACTAACCGCTATATATATT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	CTTATGCGATTCCAAATCCAAACCCAAACCCAAATCCA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	CCCTTTGCAGTGGGGAGAGGAGGATGAAGATTTTT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	CTAGTTTTTCTCCCGGTTTTCCCCCCTGGATTTTA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TTTTCTTTATATCTTTTGGGTAAAAGGGGGATTAA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	GTGCGATCGCCTTTTAAAATCGATTCCAACAAGTAAATTTTT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	AATTGTTGGTCAGTCATGGTAAGTTTTGGTTAGGTAGA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TGGAGCGGTCTTCACGAGTATCTCCAATGTGGTTTT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	AGCCCAATTGCAATCCTCCCTTAGAGAATCCTT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	AATTTGTACTATCAAATAAATTTATGAGATTTTGG
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	ATTGATAGGGATTATAATCCCCAGAAAAGCTTTTTTGC
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	GGGCAGCAGCATCAGCTTGAGTCTGAGCTAAAAG
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT

>NZ_CP040094|27|10|5660078-5662236|CRT
TCAACCCTACCTAATAGGGATTTTGATGAATTGCAAT	GTTTGGCGTGTTCCAGATGTCTGAAGGCGTTCC
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	AATCATAAACTCTGTAGTCCCTGTCCAGATTCGC
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TTAAATTGTGATTCAGCATAAATTTGATAAGATGCAA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TCGAATCTCAAGTTACGCTGCTCAAACCGTAAACATT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	GAACCAGGTGCCTATTATGTAACAAATGCCAAGTG
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TCCTTATTGATTTCATGAATGGAAGAGTCAAATTT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	GATAAATGTACTCTTACCACCCTTGGCTCGATTGACAACAG
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	GTTTTATCATCTCTGCATGATTTGTATTTCTTAT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TTGTGTTTTGCTGCATCTCCCGTAGTTTCTTTGTAA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	AATCTCGTAATATCCCCATGCTGAAAGGGGATTTTT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TATTTGCTTTGGTATATTTGTCACCTTTTAAGATGGA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	ATGTCCGCGCCAAATGGTCATTTTGGGGAAGTTT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TTGAGCGATATATTTTTCACCATCGAAAGAAAAAGA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TCGTACCCATTTATTGGTTTGGGAATCCTGATGGA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TAGCTGGCCACCCTCCTCTAAAGACAATTGTTCCAT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TCAATCACTGCTAGCGGTTGAACCTACTGTGTCTC
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TTTATCTATGCCGTGGCCGCCCGTGGATAGCGAC
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	CAGGCTGCCTCTGGGGGTGGTGGGCTACTAACCGCTATATATATT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	CTTATGCGATTCCAAATCCAAACCCAAACCCAAATCCA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	CCCTTTGCAGTGGGGAGAGGAGGATGAAGATTTTT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	CTAGTTTTTCTCCCGGTTTTCCCCCCTGGATTTTA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TTTTCTTTATATCTTTTGGGTAAAAGGGGGATTAA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	GTGCGATCGCCTTTTAAAATCGATTCCAACAAGTAAATTTTT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	AATTGTTGGTCAGTCATGGTAAGTTTTGGTTAGGTAGA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TGGAGCGGTCTTCACGAGTATCTCCAATGTGGTTTT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	AGCCCAATTGCAATCCTCCCTTAGAGAATCCTT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	AATTTGTACTATCAAATAAATTTATGAGATTTTGG
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	ATTGATAGGGATTATAATCCCCAGAAAAGCTTTTTTGC
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	GGGCAGCAGCATCAGCTTGAGTCTGAGCTAAAAG
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT

>NZ_CP040094|27|12|5660148-5662236|PILER-CR
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	AATCATAAACTCTGTAGTCCCTGTCCAGATTCGC
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TTAAATTGTGATTCAGCATAAATTTGATAAGATGCAA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TCGAATCTCAAGTTACGCTGCTCAAACCGTAAACATT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	GAACCAGGTGCCTATTATGTAACAAATGCCAAGTG
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TCCTTATTGATTTCATGAATGGAAGAGTCAAATTT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	GATAAATGTACTCTTACCACCCTTGGCTCGATTGACAACAG
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	GTTTTATCATCTCTGCATGATTTGTATTTCTTAT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TTGTGTTTTGCTGCATCTCCCGTAGTTTCTTTGTAA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	AATCTCGTAATATCCCCATGCTGAAAGGGGATTTTT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TATTTGCTTTGGTATATTTGTCACCTTTTAAGATGGA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	ATGTCCGCGCCAAATGGTCATTTTGGGGAAGTTT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TTGAGCGATATATTTTTCACCATCGAAAGAAAAAGA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TCGTACCCATTTATTGGTTTGGGAATCCTGATGGA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TAGCTGGCCACCCTCCTCTAAAGACAATTGTTCCAT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TCAATCACTGCTAGCGGTTGAACCTACTGTGTCTC
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TTTATCTATGCCGTGGCCGCCCGTGGATAGCGAC
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	CAGGCTGCCTCTGGGGGTGGTGGGCTACTAACCGCTATATATATT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	CTTATGCGATTCCAAATCCAAACCCAAACCCAAATCCA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	CCCTTTGCAGTGGGGAGAGGAGGATGAAGATTTTT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	CTAGTTTTTCTCCCGGTTTTCCCCCCTGGATTTTA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TTTTCTTTATATCTTTTGGGTAAAAGGGGGATTAA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	GTGCGATCGCCTTTTAAAATCGATTCCAACAAGTAAATTTTT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	AATTGTTGGTCAGTCATGGTAAGTTTTGGTTAGGTAGA
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	TGGAGCGGTCTTCACGAGTATCTCCAATGTGGTTTT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	AGCCCAATTGCAATCCTCCCTTAGAGAATCCTT
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	AATTTGTACTATCAAATAAATTTATGAGATTTTGG
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	ATTGATAGGGATTATAATCCCCAGAAAAGCTTTTTTGC
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT	GGGCAGCAGCATCAGCTTGAGTCTGAGCTAAAAG
GTTTCAATCCCTAATAGGGATTTTGATGAATTGCAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040094.1\|WP_174711740.1\|5666969_5667752_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174711734.1\|5651956_5652178_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	unknown	unknown	gnl\|CDD\|224514
NZ_CP040094.1\|WP_174711738.1\|5664298_5664928_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP040094.1\|WP_174711741.1\|5667854_5668067_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174711737.1\|5663679_5664177_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379326
NZ_CP040094.1\|WP_174711730.1\|5642509_5644846_-\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|223551
NZ_CP040094.1\|WP_174711743.1\|5669465_5669708_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174711739.1\|5666150_5666807_-\|gamma-glutamylcyclotransferase	unknown	unknown	gnl\|CDD\|226226
NZ_CP040094.1\|WP_174708235.1\|5670971_5672038_+\|ISKra4-family-transposase	unknown	unknown	unknown
NZ_CP040094.1\|WP_174711744.1\|5670266_5670587_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174711728.1\|5636380_5641960_+\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|226415
NZ_CP040094.1\|WP_174711735.1\|5653429_5660026_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|236848
NZ_CP040094.1\|WP_174711736.1\|5662560_5663040_-\|phosphatase	unknown	unknown	gnl\|CDD\|350353
NZ_CP040094.1\|WP_174711732.1\|5646341_5647283_-\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|119407
NZ_CP040094.1\|WP_174711742.1\|5668073_5669207_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174711729.1\|5642042_5642429_+\|four-helix-bundle-protein	unknown	unknown	gnl\|CDD\|377534
NZ_CP040094.1\|WP_174711731.1\|5644998_5645976_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187664
NZ_CP040094.1\|WP_174711727.1\|5634929_5635979_-\|molybdopterin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239028
NZ_CP040094.1\|WP_174711726.1\|5634165_5634909_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174711733.1\|5648145_5651904_+\|magnesium-chelatase-subunit-H	unknown	unknown	gnl\|CDD\|215643

Protein	Function_ID	Function_description	E-value
NZ_CP040094.1\|WP_174711734.1\|5651956_5652178_+\|type-II-toxin-antitoxin-system-HicB-family-antitoxin	gnl\|CDD\|224514	COG1598, COG1598, Predicted nuclease of the RNAse H fold, HicB family [General function prediction only].	1.51094e-05
NZ_CP040094.1\|WP_174711738.1\|5664298_5664928_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.4813e-13
NZ_CP040094.1\|WP_174711737.1\|5663679_5664177_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379326	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	3.26185e-18
NZ_CP040094.1\|WP_174711730.1\|5642509_5644846_-\|cation:proton-antiporter	gnl\|CDD\|223551	COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism].	2.68396e-92
NZ_CP040094.1\|WP_174711739.1\|5666150_5666807_-\|gamma-glutamylcyclotransferase	gnl\|CDD\|226226	COG3703, ChaC, Uncharacterized protein involved in cation transport [Inorganic ion transport and metabolism].	1.1876e-56
NZ_CP040094.1\|WP_174711728.1\|5636380_5641960_+\|AAA-family-ATPase	gnl\|CDD\|226415	COG3899, COG3899, Predicted ATPase [General function prediction only].	0
NZ_CP040094.1\|WP_174711735.1\|5653429_5660026_+\|HAMP-domain-containing-protein	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	2.05875e-70
NZ_CP040094.1\|WP_174711736.1\|5662560_5663040_-\|phosphatase	gnl\|CDD\|350353	cd14503, PTP-bact, bacterial tyrosine-protein phosphataseS similar to Neisseria NMA1982. This subfamily is composed of bacterial tyrosine-protein phosphatases similar to Neisseria meningitidis NMA1982, which displays phosphatase activity but whose biological function is still unknown.	2.74012e-29
NZ_CP040094.1\|WP_174711732.1\|5646341_5647283_-\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|119407	cd02696, MurNAc-LAA, N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs are members of the bacterial autolytic system and carry a signal peptide in their N-termini that allows their transport across the cytoplasmic membrane. However, the bacteriophage MurNAc-LAAs are endolysins since these phage-encoded enzymes break down bacterial peptidoglycan at the terminal stage of the phage reproduction cycle. As opposed to autolysins, almost all endolysins have no signal peptides and their translocation through the cytoplasmic membrane is thought to proceed with the help of phage-encoded holin proteins. The amidase catalytic module is fused to another functional module (cell wall binding module or CWBM) either at the N- or C-terminus, which is responsible for high affinity binding of the protein to the cell wall.	2.52886e-47
NZ_CP040094.1\|WP_174711729.1\|5642042_5642429_+\|four-helix-bundle-protein	gnl\|CDD\|377534	pfam05635, 23S_rRNA_IVP, 23S rRNA-intervening sequence protein. This family consists of bacterial proteins encoded within an intervening sequence present within some 23S rRNA genes. It folds into an anti-parallel four-helix bundle and forms homopentamers.	1.95229e-33
NZ_CP040094.1\|WP_174711731.1\|5644998_5645976_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187664	cd09763, DHRS1-like_SDR_c, human dehydrogenase/reductase (SDR family) member 1 (DHRS1) -like, classical (c) SDRs. This subgroup includes human DHRS1 and related proteins. These are members of the classical SDR family, with a canonical Gly-rich NAD-binding motif and the typical YXXXK active site motif. However, the rest of the catalytic tetrad is not strongly conserved. DHRS1 mRNA has been detected in many tissues, liver, heart, skeletal muscle, kidney and pancreas; a longer transcript is predominantly expressed in the liver , a shorter one in the heart. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	1.03852e-110
NZ_CP040094.1\|WP_174711727.1\|5634929_5635979_-\|molybdopterin-dependent-oxidoreductase	gnl\|CDD\|239028	cd02110, SO_family_Moco_dimer, Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain. This molybdopterin cofactor (Moco) binding domain is found in a variety of oxidoreductases, main members of this family are nitrate reductase (NR) and sulfite oxidase (SO). .	9.96622e-78
NZ_CP040094.1\|WP_174711733.1\|5648145_5651904_+\|magnesium-chelatase-subunit-H	gnl\|CDD\|215643	PLN03241, PLN03241, magnesium chelatase subunit H; Provisional.	0

>NZ_CP040094.1|WP_174711735.1|5653429_5660026_+|HAMP-domain-containing-protein
MATEQLTRDSDNLDLNQLLRTLNAVKQGDFSARMPIDHTGVAGKIADTLNNIIDQNERMAAELQRIGNVVGKEGKIAERASLGDVRGSWSNCVTSVNTLITDLVQPTAETTRVIRSVANGDLSQTIATEIDGRPLQGEFLQTANIVNTMVERLGSFASEVTRVAREVGTEGKLGVQAEVQGVAGTWKDLTDNVNLMAGNLTGQVRNIAEVATAIANGDLSKKITVDVKGEILELKNTVNTMVDQLNSFASEVTRVAREVGTEGKLGVQAEVKGVAGTWKDLTDNVNLMAGNLTAQVRNIAEVTTAVANGDLSKKITVDVKGEILELKNTVNIMVDQLNSFASEVTRVAREVGAEGKLGGQAEVRGVAGTWKDLTDSVNFMAGSLTAQVRNIAEVTTAVANGDLSKKITVDVKGEILELKNTINTMVDQLNSFASEVTRVAREVGTEGKLGVQAEVRGVAGTWKDLTDNVNLMAGNLTGQVRNIAEVATAIANGDLSKKITVDVRGEILELKNTINIMVDQLSSFASEVTRVAREVGSEGKLGVQADVRGVAGTWKDLTDSVNFMAGSLTAQVRNIAEVTTAVATGDLSKKITVDVKGEILELKNTINTMVDQLNSFASEVTRVAREVGSEGKLGVQAEVRGVAGTWKDLTDSVNFMAGSLTAQVRNIAEVTTAVATGDLSKKITVDVKGEILELKNTINTMVDQLSSFASEVTRVAREVGTEGKLGVQAEVKDVAGTWKDLTDSVNFMAGSLTAQVRNIAEVTTAIANGDLSKKITVAVKGEILELKNTINIMVDQLNSFASEVTRVAREVGSEGKLGVQADVRGVAGTWKDLTDSVNFMAGSLTAQVRNIATVTTAVANGDLSKKISVDVKGEILELKNTINTMVDQLNSFASEVTRVAREVGTEGKLGVQAEVKGVAGTWKDLTESVNFMAGSLTAQVRNIAEVTTAVANGDLSKKITVDVKGEIQELKNTINTMVDQLNSFASEVTRVAREVGTEGKLGVQAYVRGVAGTWKDLTDNVNSMAGNLTGQVRNIAEVTKAVANGDLSKKITVDAKGEILDLKNTTNTMVDQLSSFASEVTRVAREVGTEGKLGGQAQVQGVAGTWKDLTDNVNSMAGNLTAQVRGIARVVTAVANGDLKRKLMLDAKGEIETLAETINEMIDTLATFANQVTTVAREVGIEGKLGGQARVPGAAGTWKDLTDNVNELAATLTTQLRAIAEVATAVTKGDLTRSIAVEALGEVAILKDNINQMIANLRETTQKNTEQDWLKTNLAKFTRMLQGQRDLETVSKLILSELAPLVGAQHGVFFLMESGENTPFLKLISSYAYRERRHLANRFHLGEGLVGQCALEKERILLTDVPSDYVRIASGLGEASPLNAVVLPVLFEGQVTAVIELASFRRFSEIHLTFFDQLTESIAIVLNTIAASMRTEELLKQSQSLAEELQTQQNELRETNKRLEQQAQSLKTSEDLLKGQQEELQQTNAELEEKAELLAMQKKEVERKNREIEQARMSLEDKAEQLALSSKYKSEFLANMSHELRTPLNSLLILAKLLADNIDHNLTSKQVEYSQTIYSAGTDLLALINDILDLAKIESGTMSIDITQMPLVELGEQIERTFRQIADNKGLAFAIEFTPDLPTTIYTDVKRLQQVLKNLLSNAFKFTEQGEVRLQIAVAKQGWSNDQVTLNRAQNVIAFSVSDTGIGIAPDKQKVIFEAFQQADGSTSRRYGGTGLGLSISREIARLFGGEIKLTSQPGQGSTFTFFFPQLNPESTSTQLLTPYSLLPTLHSSLSTQNSALLSDDRATIGMGDRVLLIVEDDVNFARILIDMAQQHGFKVITAQNGSTGLALAQQFYPSAVLLDIRMPEMDGWTVLDRLKHDPNTRHIPVHIMTVEEGQQRSLQLGAIAYLQKPLSSETISEALVKIKGFVERQVKNLLVVEDDDTQRHSIVELIGNNDVYTTAVATGAEALEAIRTQHFDCLVLDLGLPDMTGFELIDQIKLLPHGKTLPIIVYTGRDISKAQETELRRIAETIIIKDVRSPERLLDETALFLHRVQANLPAPKRQILEQLHSIDYLLAGKKALIVDDDMRNIFALTSMLERYQIQVLYAENGREGINLLENTPDIDVVLMDVMMPEMDGYETTSLIRQNEQFKSLPIIALTAKAMQGDREKCIEAGASDYITKPVDTEQLLSLLRVWLYR
>NZ_CP040094.1|WP_174711734.1|5651956_5652178_+|type-II-toxin-antitoxin-system-HicB-family-antitoxin
MENSFTAVYEKIDDWYIGYVQELPGANVQERTLEEARESLREAIELILISNRELAEQQISGKDVVREQITVKL
>NZ_CP040094.1|WP_174711733.1|5648145_5651904_+|magnesium-chelatase-subunit-H
MKRIVLVAGFESFNADLYRKAAFLANSRCPELDIRVFSDRNITSQRAEVEAALDNADVFFGSLLFDYDQVVWLGDRISQIPIRLVFESALELMSLTKLGDFAIGDKPKGMPKPVKFILDKFSNGREEDKLAGYISFLKIGPKLLKYVPVQKVQDLRNWLIIYGYWNAGGPENVASLFWTLAEKYLDLKVGDIPPLIETPNIGLLHPDYQGFFESPREYLEWYKTHCRDAIHRVFPIDAMNRVSTKPVVGILLYRKHVITKLPYIPQLIRSFEKAGLTPLPIFINGVEGHVAVRDLMTTDYEIQQRQLGNIETPSLSSEAVKVDAIVSTIGFPLVGGPAGSMEAGRQIEVAKRILTAKNVPYIVAAPLLIQDIHSWTRQGVGGLQSVVLYALPELDGAIDTIPLGGLVGENIYLVPERVQRLIDRVKSWVSLRQKPASERKIAIILYGFPPGYGAVGTAALLNVPRSLLKFLHALKEQGYTVGDLPEDGEELIRWVKEADEANPLVGQSSRPPLDNGAHVAHPTSTVNFRTLEKWLGYLQTSRIEKQWKSLTGTGIKTYGEEFQIGGVQLGNVWIGVQPPLGIQGDPMRLMFERDLTPHPQYAAYYKWLQNEFQADAIVHFGMHGTVEWLPGSPLGNTGYSWSDILLGNLPNLYIYAANNPSESMLAKRRGYGVLISHNVPPYGRAGLYKELVALRDLIAEYREDPQKNYALKEAICKKIVDSGLDADCPFANAKKLGIAFTPENVRMFSGHAFDDYLVELYEYLQVLENRLFSSGLHTLGERPSEEELGAYLEAYFGGEEEENEPRRRKGREEREEEERLIRDLLMQSTDELTNLLRGLNGEYIPPAPGGDLLRDGAGVLPTGRNIHALDPYRMPSPAAYERGREIGQKIIAQHLEECEKYPETVAVMLWGLDAIKTKGESLGILLELVGAEPVKEGTGRVVRYELKPLAEVGHPRIDVLGNLSGIFRDSFVNIIELLDDLFQRAADADEPDDQNFVRKHALALKAQGVENASARLFSNPAGDFGSLVNDRVVDGNWESGEELGNTWQSRNVFSYGREDKGQARPEVLNTLLKTSDRIVQEIDSVEYGLTDIQEYYANTGGLKKAAEKQSGKKVTTSFVESFSKDTTPRNLDDLLRMEYRTKLVNPKWAQAMANQGSGGAFEISQRMTALIGWGGTADFTDDWVYDQAADTYALDAEMAEKLRKANPEAFRNILGRMLEAHGRGFWEADGEKLDKLRQLYELTDEELEGVTV
>NZ_CP040094.1|WP_174711732.1|5646341_5647283_-|N-acetylmuramoyl-L-alanine-amidase
MKFGIDSGHNCPPDTGASGIKFEDNLTLDVGNRVIAKLRALGNEVVVCRPSSARTVTESLSKRCSTANGSKVDIYVSIHFNCFNGQANGTEVYATSDTGRKIAKPVLDEIVKLGFFNRGVKSGSHLYVLKNTDMPAILVEGCFIDSQKDVNLFNPEAMANAIVKGLTGKVPTTPVNPVPDEEENVDTTILRLQKALNRLKIVDKNGKALVEDGLTGANTKSAVEKFQAIVGVQSTGVADEATWNAINLILAKRIIRPNHAGGAVVRYLQYRLGVENDGVYGPQTEVVVKNFQKQNGLDADGIVGPDSWQKLIG
>NZ_CP040094.1|WP_174711731.1|5644998_5645976_-|SDR-family-NAD(P)-dependent-oxidoreductase
MKHLEGRVALVTGATRGIGRGIAIGLAEAGATVYVTGRSLNNSSSDAVSGSLGETQSTIEEVGGVCIPVQVDHGDDEQVRLLFERIQDEQDGQLDLLVNNAYSGVEALKNAFGQPFWDCELSLWDASNNVGLRSHYVASVFAARMMTKRNSGLICTISSWGSMSYIFNTAYGVGKAACDRLAADMAVELKPHNVASVSIWPGIVGTELFSRFATEMNQTDTTEQKNSLISDRYNWETPLLTGRVIAALACEPNLMRRTGRVQIVAELADKYGIVDENGDRPASLRSLRFVLPAALPILRNYSWLIPDIKMPWSFLLLSALSSPKI
>NZ_CP040094.1|WP_174711730.1|5642509_5644846_-|cation:proton-antiporter
MQEDFRLIVDLVLVLGVAACGGLLAALLRQPVLLGYLIGGIVIGPTGLGLIKEVIQVETLAQFGVAFLLFALGVEFSFAELKKVKAIALGGGGLQIALTILVTVVVSGLSGAWGTLPAKGMFLGCILSLSSTAVVLKCLMERNETETPHGQVMLGILVVQDLALGLMLAVLPALNQPAETIGIAVLTALLWIALFAAGAVAAGMWLIPPLLQLLARTESRELFLLGVVALCLGIALLTEHLGLSIEMGAFVAGLMISEVEYADQTLTYVEPLRDIFASLFFAAIGMLIDPVFLWNNLELILGLVALVFIGKFLIITPLVKLFRYPLKTAIIAGLGLAQIGEFSFVLASEGQSLGLVSRQIYLLILGTTAVTLMLTPFVLRLVPFLFNFAESMPWLKPYLEEQEALDVSEDLPFKDHVVVCGYGRVGKNLVKLLLQHNLPVVVIDQSESRIQQLREAGVSYVYGNCVSLHVLETAGVNHAKGMAIALPDPISTRLSLKRALELRPELDLVVRATQDKNIEVLYQLGAREVVQPEFEASLEMATYLLTGLGLLSPTVVQREMQQIRNDHYLDLRPERSATEVARDLRQATRDLNQRWYPLPADSPLIGMSIEEADMRYLTGASLMAIRRANGDEIDYPNNQTKLEDGDRLLVVGADEELAALAEFAKGQAAVPGENSACQWVTVNADTPTLGKTLADLDINKRFGVQVQAIRRDGKFIRYPDGGMDLQVGDQVLLCGGLIGLSQIEQLFAIANSLPLSLPVLKAAQAEALQEFLPVDRVD
>NZ_CP040094.1|WP_174711729.1|5642042_5642429_+|four-helix-bundle-protein
MEKEPIKSHEDLEVYKMAFDVAMKIFELSKKFLVEEKYSLTDQIRRSSRSVCANLAEAWRKRRYEAAFVAKLNDCESEAAETQTWLKFALQCNYLNVETGRELYETYNRVLGILVNIIKNPSSWLIKR
>NZ_CP040094.1|WP_174711728.1|5636380_5641960_+|AAA-family-ATPase
MVENRVDVPGYGIGEKIYTSTRILVYRGWREADQTPVVIKLLKNSYPSLIELAQFRNQYSITKILNVPGVVRIYSLESCQNRPVLILEDFGGISLKEYTVFRRKGLGETGNQENSSSLHPDFLTEFLEIAIALADILADLYHHEIIHKDIKPANILINPTTKQVKLIDFSIASLLPRVNQLSTSPTVLEGTLAYLSPEQTGRMNRGIDYRTDFYSLGVTFYELLTGQLPFQSDDLMELVHCHIAKQPPLLNDKGEIPQILCDIVMKLMAKNAEDRYQSALGLKHDLQICLEQLQSSGNIIPFQLGHRDVCDRFAIPEKLYGREVEVAMLLETFERVRQGTSEMMLVAGSSGIGKTAIVNEVHKPITRQRGYFIKGKFDQFNRNIPFFALVQAFRDLMAQLLTESDAQIEQWKTQILSTLGESGQVIIEVIPELERIIGKQPSLPELSGSAVQSRFNLLFQKFIQVFTTQEHPLVIFLDDLQWADSASLKLMHLLMSEASNSYLLVIGAYRDNEVSSAHPLMLTIEEMRQEAITVSNIVLSPLTETDLNQLIADTLKYSTEQATAIANLVYQKTKGNPFFTNQFLKSLYEDGLIAFASRTGDWQCNLVQIRALSFTEDIVEFVALQLNKLPQQTQNVLKLAACVGNQFDLETLSVVYEKSPVQTAADLWPALKDELILPSGEGYTFFQDESVVMDDLTNDNTPIIITYKFFHDRIQQAAYSLIPDDQKSATHLKIGQLLLSNTSETEQELLIFEIVNQLNLGIELIASQTDRDQLAQLNLLAGKKAKSSTAYQVAIEYLTTGIRLLRSDCWQSQYELTLALHESAADAAYLSGAYEQMEQLARTVIQQAKTPLDLVGIYETKIQAYTAKNDVLGAIAIARQGMSKFGVIFPETPTPQDIQQALQETATLINGRDIAELVDLPVMVAAEKLAVTRIVANVAPAVYIADPNLFPLLVLSQVQASIEYGNAPFSAFCYGCYGILLSGILQDIETADRVGNLALALTDKFNISDIKPTVFYVVGAFITYLKSSLQKSLQLMLEGYKIALETGNVYYVGFNTKDICQYSYFLGRELNSLEEDIRAYCHVLENFKQGTTLNYCRIFWQTVLNLLGKSENPCIITGEALNEAEFVNQLVQANELTGLHYFFLHKLILCYLFENLSQAVETAAKAREYLVAGTGYATVPMFYFYDSLTALAEYRTATASRQETLLERVTENQEKMQTWAHHAPMNYLHKFELVKAEECRVLGQMAQAVDYYDRAIAQAKANRYIQEEALANELAARFYLEWNKEAIAQIYLENAYYTYLSWGAIAKVNQLERQYSQLLLKLFQQDETTSSTLTTTIGFNQSSSTGTEALDLATVMKASHALAGEIELEKLLTTLMQVVIENAGADKSVLLMLQEDNWVVVAQKTSQAIFEEQQFLPHPTPTDENLGIINLHSLPLSASQDVPKAVVNYVSRTTETLVLDDARKETTFANDPYIILWQPKSLLCTPIHNRGQLIGILYLENSLTTGAFTQNRLEVLRLLTAQAAISLQNAMLYNNLAVAKAQLEDYSHTLEQKVEQRTLELNDKNQHLSETLEELQHTQSQLIQTEKMSSLGQMVAGVAHEINNPINFIYGNLTYTNEYCQDLLHLVERYQHYYPQPFPEIQQELEAIDLNFLKPDLQKLLQSMKVGADRIRQIVLSLRNFSRLDEAEMKSVNLHEGIDSTLLILHHRLEEKAHRPGIDVIKEYEQLPEVSCYASQINQVFMNILNNAIDALDSSFINEDRQTKIPAIQIRTKMTDADTVIIQIADNGSGMSDEVKQRLFDPFFTTKPIGTGTGLGLSISHSIVEKHGGRLSVISEPGKGAEFSLSIPLHNTVEQRLLK
>NZ_CP040094.1|WP_174711727.1|5634929_5635979_-|molybdopterin-dependent-oxidoreductase
MNEFDQTLEDQSMSYVGMIAKFPLGVHDLKSFITPENHLFVLCHLGIPVIDIQQWSLKISGLVEQNLELSYQNLLSLEYRELTVLHQCSGNPLQPKVPTRLISNVTWGGVSLRAILNQLQVKPEARYVWFVGTDRGVYEGVASDSYIKDIPIRKALDNDVLLAYKLNGEFLSAERGFPLRLVVPGYYGTNFVKWLSHIYVTDRRSPGTFTTTFYNDRVRGDDATLKPVWEVAPESVIVHPSQNEVLYLQPQTHWGWAWASKGIQSVDVSIDGGITWQAAEVEPRMQYAWQRFTFQWTPPTPGQYSLMSRATDYDGAIQPIQQERNAVYTVAVTVKETTVKDSKPFTAAE
>NZ_CP040094.1|WP_174711726.1|5634165_5634909_+|hypothetical-protein
MKSILELIEQKNQEYAKLPFFEYMKDESIDPRQRLAFAPVIAPLALEFSELCKRVLRDEPTTNYIQEMVNLHTHEEHFHWQWLLEDMEKMGIDYPMRFSDAVRFLWSDHTKVSRSMFPIFERYTRGADPIIRLVAIEVSEVTANVFFRSTMSAALQLQEMTQTEFRYFGMRHNHIENTHTLHTPASLQIMKEIEVPEEIRQQALELIDVAFVYFTDLINEFLVYIKTHSYQEPFSKVYEPERSLTSI
>NZ_CP040094.1|WP_174711736.1|5662560_5663040_-|phosphatase
MINAIQINENLTTTGQIIPKQLEQAIQEGFKSVLNLRSPDELGFSKDEQKVAEALGLHYKNVPLKVDLKNLNEEAITKILTTLEEIPKPAVVHCAAGMRSTGIALLSIAIQEGLTPEETLARAKNLGFGFFEHAGVSPRLKQLFVDYVSKHARLAVPTC
>NZ_CP040094.1|WP_174711737.1|5663679_5664177_+|GNAT-family-N-acetyltransferase
MSANEISLRPAQETDAWVMSAIHIAAIKALPATFYTEKELLAWRNYHDKPDGSNILKSMKVETCKVAIRGDVVIGFASFIVDELIGLYVHPKYQGKGIGRALVQHFCDEATDQGIDKVITTASLYAEGFYLRLGFTAIQKAPHYLRKGIVVPVTKMSKTLATAPK
>NZ_CP040094.1|WP_174711738.1|5664298_5664928_+|TetR/AcrR-family-transcriptional-regulator
MNKSIRSSTLTRIRLIEAASQVFASLGVQGATTREIARVAGVNEVTLFRHFASKEQLLGAVIKNALALQTEALAYPEAWTQDLKIDLRQYAHLYNTMLEAQEDLIRTFIGEAKRHPEAAKQVIQEAAKPLGEKLVDYLQSSQKLGTVRVDLDPFPAVDMFTGMLLAGMLCRSAKFNQGSYSCEDYIETCVDIFVRGISTSNISQCGCKF
>NZ_CP040094.1|WP_174711739.1|5666150_5666807_-|gamma-glutamylcyclotransferase
MSLSRSDLEAGNAQTRLLEASHSGINLTTLSEDELQRSLHEILQYQLPNSDIWIFAYGSLIWNPLITYVERRPGIIYGWHRRFCTWMILGRGTPENPGLLLGLDRGGSCRGIIYRIAASDVPTELLLIWRREMLAGVYVARWVRVLDGKQEFKAIAFVANRQHPRYAHKLPLTTTVNSIATASGKLGSCADYLMKTVDGLIAEGIKDRKLLLLRKQVL
>NZ_CP040094.1|WP_174711740.1|5666969_5667752_+|hypothetical-protein
MTSATNQLLKLSIQYLPTIATKLAITTLIAILPLPVKAVTLVTSRADFASNDGIDWSILGKVFNPFAPDPSAFLPNSFSAVSEGGLALGVTVPQVNDSGITPPFVFQTSFIPKGIPTNFTDGDFLLLTGLNPQSGFPAIGNSGPLTINFDRPVFGAGTQIAVDDILKFNVFVSAFDSANNLLGTFSAPGTSSVTLDNSALFVGISSETANISRLVFSTSELNRAFAINRVSIIAVPEPNYTLAILAFGVSSVILKVRQRR
>NZ_CP040094.1|WP_174711741.1|5667854_5668067_-|hypothetical-protein
MISIPLPRQKSLDNLTPGRVAQAMGGVLVLIPPPTHSPKPRQRKNRYPIVEKTATVPRKEPSVGVSDFCR
>NZ_CP040094.1|WP_174711742.1|5668073_5669207_-|hypothetical-protein
MKISLLCALTIFSVLGISHQAKAYNLEACQKNPMADKPQMINLLQPIDQKIVDCIPLLDSIASQWQSQARSIVSKVNQFTIGNQGNTSLEKLEYNVVGNTIYLVAKVQPKHTWSVTIPAVKADVPVTRNRDVKKCIGSGRLKTCATITVPEIVMELQTITPETSASHTASVTCNYEYTFNLSTKEQKPVLDCGKGWTGNIKLDASSITSILSGEMPTLGSLIGSIDLTPPLFKDATRDEYITTRDNIIAQNPNSIVYFSSQPFVNWASVKNQAANVIITALSGGGYSPEFLRQLEEKLRSEIIYMADFTAQTAIDLGTEQILSMIQERKILNFDRYTVSVKVVDTPEVQQKCVVNRSECTPPIQLSRLGFAIIASPK
>NZ_CP040094.1|WP_174711743.1|5669465_5669708_-|hypothetical-protein
MSTATTVGEQREKVRLGLSSQLHPYIVNKTWFLSCDRILKQPIYVAGFSTSQNRVAPLLLVFASICAFPPLLIVFLVCFD
>NZ_CP040094.1|WP_174711744.1|5670266_5670587_+|hypothetical-protein
MMLEEKLSQSFSVVKPLTQQEYRQRKILLKKINNSWIKGALKNSLYAKALIDLGRVRDYEDLSERLKLRSAICIQPLTSEYIDRYLEDAGESLEGLKILLQQDSEL
>NZ_CP040094.1|WP_174708235.1|5670971_5672038_+|ISKra4-family-transposase
MTPEQKQALQKHIQAIAKILYEDTSKEKLTNLAAIEEAVRSQMQKHVMPEVGGFFIETITGTTAGYQRRLKSILGELAITSKQAIELEVAPSTQLSPYLETCCLRVSANVSYEDAASDIKYFTGIEVSHSSQQRLVHRQNFELPTPEQTIEELSVDGGNIRVRTPKGQICAWLGYKAISLHHLGILGTSFQNNQIVIDWVNDQPLASPLTCIGDGHDGIWNIIDQLAPDAQRREILDWFHLIENLHKVGGSQKRLKQAQNLLWKGQVEATIALFTDCKGKQVQNFCRYLDKHRNRIINYEYYQAEEICSIGSGSVESAVKQVDRRTKISGAQWKRENVPQVLAHRCAYLNGLLSV

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Crispr_ID: NZ_CP040094_28

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040094_28

6117125-6117229

Orphan

N:A

Consensus_repeat	Method
TCCTATTTCAGGAGACAGTTCTATCAGTTGATTGTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040094_28

>merge|NZ_CP040094|28|6117125-6117229|CRISPRCasFinder
TCCTATTTCAGGAGACAGTTCTATCAGTTGATTGTCTTTGAGGTGTAGCAGTCTGAGGTTGGTGAGTTGTCCTATTTCAGGAGGCAGTTCTATCAGTTGATTGTC

>NZ_CP040094|28|27|6117125-6117229|CRISPRCasFinder
TCCTATTTCAGGAGACAGTTCTATCAGTTGATTGTC	TTTGAGGTGTAGCAGTCTGAGGTTGGTGAGTTG
TCCTATTTCAGGAGGCAGTTCTATCAGTTGATTGTC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040094.1\|WP_174712041.1\|6113288_6114167_-\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|133475
NZ_CP040094.1\|WP_012409876.1\|6127252_6127621_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174713774.1\|6125162_6125636_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174712038.1\|6108627_6109917_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP040094.1\|WP_174712047.1\|6123234_6124122_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176106
NZ_CP040094.1\|WP_174712050.1\|6130513_6131707_-\|TIGR00303-family-protein	unknown	unknown	gnl\|CDD\|235300
NZ_CP040094.1\|WP_174712033.1\|6100040_6101366_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379062
NZ_CP040094.1\|WP_174712043.1\|6117912_6118434_-\|GNAT-family-N-acetyltransferase	unknown	unknown	unknown
NZ_CP040094.1\|WP_174712048.1\|6124256_6125033_+\|methyltransferase-domain-containing-protein	unknown	unknown	gnl\|CDD\|379312
NZ_CP040094.1\|WP_174712036.1\|6104705_6107348_-\|ATP-dependent-chaperone-ClpB	unknown	unknown	gnl\|CDD\|274529
NZ_CP040094.1\|WP_174712039.1\|6110062_6111121_-\|N-acetyl-gamma-glutamyl-phosphate-reductase	unknown	unknown	gnl\|CDD\|234761
NZ_CP040094.1\|WP_174712046.1\|6121767_6123099_+\|phosphoesterase	unknown	unknown	gnl\|CDD\|309350
NZ_CP040094.1\|WP_174712032.1\|6097783_6099772_-\|molecular-chaperone-HtpG	unknown	unknown	gnl\|CDD\|235366
NZ_CP040094.1\|WP_174712045.1\|6118910_6121541_+\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|223896
NZ_CP040094.1\|WP_174712040.1\|6111445_6113119_+\|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase-RibB/GTP-cyclohydrolase-II-RibA	unknown	unknown	gnl\|CDD\|236465
NZ_CP040094.1\|WP_174712044.1\|6118423_6118708_-\|DUF1778-domain-containing-protein	unknown	unknown	gnl\|CDD\|370057
NZ_CP040094.1\|WP_174712035.1\|6104243_6104546_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174712049.1\|6125717_6126896_-\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270379
NZ_CP040094.1\|WP_174712037.1\|6107936_6108371_-\|lactoylglutathione-lyase	unknown	unknown	gnl\|CDD\|272886
NZ_CP040094.1\|WP_174712034.1\|6101362_6104158_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|274350

Protein	Function_ID	Function_description	E-value
NZ_CP040094.1\|WP_174712041.1\|6113288_6114167_-\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|133475	cd06583, PGRP, Peptidoglycan recognition proteins (PGRPs) are pattern recognition receptors that bind, and in certain cases, hydrolyze peptidoglycans (PGNs) of bacterial cell walls. PGRPs have been divided into three classes: short PGRPs (PGRP-S), that are small (20 kDa) extracellular proteins; intermediate PGRPs (PGRP-I) that are 40-45 kDa and are predicted to be transmembrane proteins; and long PGRPs (PGRP-L), up to 90 kDa, which may be either intracellular or transmembrane. Several structures of PGRPs are known in insects and mammals, some bound with substrates like Muramyl Tripeptide (MTP) or Tracheal Cytotoxin (TCT). The substrate binding site is conserved in PGRP-LCx, PGRP-LE, and PGRP-Ialpha proteins. This family includes Zn-dependent N-Acetylmuramoyl-L-alanine Amidase, EC:3.5.1.28. This enzyme cleaves the amide bond between N-acetylmuramoyl and L-amino acids, preferentially D-lactyl-L-Ala, in bacterial cell walls. The structure for the bacteriophage T7 lysozyme shows that two of the conserved histidines and a cysteine are zinc binding residues. Site-directed mutagenesis of T7 lysozyme indicates that two conserved residues, a Tyr and a Lys, are important for amidase activity.	2.38132e-16
NZ_CP040094.1\|WP_174712050.1\|6130513_6131707_-\|TIGR00303-family-protein	gnl\|CDD\|235300	PRK04447, PRK04447, hypothetical protein; Provisional.	5.65106e-168
NZ_CP040094.1\|WP_174712038.1\|6108627_6109917_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP040094.1\|WP_174712033.1\|6100040_6101366_+\|ATP-binding-protein	gnl\|CDD\|379062	pfam13191, AAA_16, AAA ATPase domain. This family of domains contain a P-loop motif that is characteristic of the AAA superfamily.	0.00117368
NZ_CP040094.1\|WP_174712048.1\|6124256_6125033_+\|methyltransferase-domain-containing-protein	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	6.98499e-26
NZ_CP040094.1\|WP_174712036.1\|6104705_6107348_-\|ATP-dependent-chaperone-ClpB	gnl\|CDD\|274529	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. [Protein fate, Protein folding and stabilization].	0
NZ_CP040094.1\|WP_174712039.1\|6110062_6111121_-\|N-acetyl-gamma-glutamyl-phosphate-reductase	gnl\|CDD\|234761	PRK00436, argC, N-acetyl-gamma-glutamyl-phosphate reductase; Validated.	0
NZ_CP040094.1\|WP_174712046.1\|6121767_6123099_+\|phosphoesterase	gnl\|CDD\|309350	pfam04185, Phosphoesterase, Phosphoesterase family. This family includes both bacterial phospholipase C enzymes EC:3.1.4.3, but also eukaryotic acid phosphatases EC:3.1.3.2.	4.91757e-06
NZ_CP040094.1\|WP_174712032.1\|6097783_6099772_-\|molecular-chaperone-HtpG	gnl\|CDD\|235366	PRK05218, PRK05218, heat shock protein 90; Provisional.	0
NZ_CP040094.1\|WP_174712045.1\|6118910_6121541_+\|U32-family-peptidase	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	1.47459e-112
NZ_CP040094.1\|WP_174712040.1\|6111445_6113119_+\|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase-RibB/GTP-cyclohydrolase-II-RibA	gnl\|CDD\|236465	PRK09319, PRK09319, bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase RibB/GTP cyclohydrolase II RibA.	0
NZ_CP040094.1\|WP_174712044.1\|6118423_6118708_-\|DUF1778-domain-containing-protein	gnl\|CDD\|370057	pfam08681, DUF1778, Protein of unknown function (DUF1778). This is a family of uncharacterized proteins. The structure of one of the hypothetical proteins in this family has been solved and it forms a helix structure which may form interactions with DNA.	1.75575e-16
NZ_CP040094.1\|WP_174712047.1\|6123234_6124122_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176106	cd08414, PBP2_LTTR_aromatics_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold. This CD includes the C-terminal substrate binding domain of LTTRs involved in degradation of aromatic compounds, such as CbnR, BenM, CatM, ClcR and TfdR, as well as that of other transcriptional regulators clustered together in phylogenetic trees, including XapR, HcaR, MprR, IlvR, BudR, AlsR, LysR, and OccR. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the substrate-binding domains from ionotropic glutamate receptors, LysR-like transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	1.32017e-85
NZ_CP040094.1\|WP_174712049.1\|6125717_6126896_-\|extracellular-solute-binding-protein	gnl\|CDD\|270379	cd13661, PBP2_PotD_PotF_like_1, The periplasmic substrate-binding component of an uncharacterized active transport system closely related to spermidine and putrescine transporters; contains the type 2 periplasmic binding fold. This group represents the periplasmic binding domain that serves as a primary polyamine receptor of an uncharacterized ABC-type transport system from plants and plant-symbiotic cyanobacteria. Polyamine transport plays an essential role in the regulation of intracellular polyamine levels which are known to be elevated in rapidly proliferating cells and tumors. Natural polyamines are putrescine, spermindine, and spermine. They are polycations that play multiple roles in cell growth, survival and proliferation, as well as plant stress and disease resistance. They can interact with negatively charged molecules, such as nucleic acids, to modulate their functions. Members of this family belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	7.76868e-119
NZ_CP040094.1\|WP_174712037.1\|6107936_6108371_-\|lactoylglutathione-lyase	gnl\|CDD\|272886	TIGR00068, Lactoylglutathione_lyase, lactoylglutathione lyase. Lactoylglutathione lyase is also known as aldoketomutase and glyoxalase I. Glyoxylase I is a homodimer in many species. In some eukaryotes, including yeasts and plants, the orthologous protein carries a tandem duplication, is twice as long, and hits this model twice. [Central intermediary metabolism, Amino sugars, Energy metabolism, Other].	4.4583e-82
NZ_CP040094.1\|WP_174712034.1\|6101362_6104158_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	2.57238e-35

>NZ_CP040094.1|WP_174712041.1|6113288_6114167_-|N-acetylmuramoyl-L-alanine-amidase
MRFKDWATRVLLISLMFMAVIVVLLIGRATKLHNNPTTSHVSNPRVMAFSQYPQVQFQSAKEPEKKSQRVIKSPVKTNKPVSRYITTQAFAKYRPSYQVAAVDPSNYGERYTQDVNGVRLNNQPIIVLHETGYSASSAINFFQVAHNDESVQASYHALIKLDGTVVYLVPPEKRAFGAANSVFESTQGLETVQTNPNLPASVNNFAYHVSLETPPDSYDSSSQQTHSGYTEAQYKSLAWLIAQSQVPDYRITTHHLVDRSGKKVDPINFDGNRFLSLLNTFRQVRPIYRASN
>NZ_CP040094.1|WP_174712040.1|6111445_6113119_+|bifunctional-3,4-dihydroxy-2-butanone-4-phosphate-synthase-RibB/GTP-cyclohydrolase-II-RibA
MSQPNPTQAFKFDSINAALADLKAGRVIVVVDDENRENEGDLICAAQFATPDTINFMAVEARGLICLAMTGDRLDELDLPLMVSNITDTNQTAFTVSIDAGPELGVTTGISAEDRARTIQVTLNPATKPSDLRRPGHIFPIRAKAGGVLKRAGHTEAAVDLARLAGLYPAGVICEIQNSDGSMARLQQLVEYAERHNLKIISIADLISYRLQHDRLVYREVITKLPSQFGQFEIYAYRHTLDHTEHVAIVKGDPDNFKDEPVMVRMHSECLTGDALGSLRCDCRMQLEAALKMIEAAGQGVVVYLRQEGRGIGLINKLKAYSLQDMGLDTVEANERLGFPADLRDYGMGAQMLMDLGIKKIRLITNNPRKIAGVKGYGLEVVDRVPLLIEANDYNSYYLATKAKKLGHMLLQTYLVTVAIHWQDDPEAVTERYERLEKLRHLAKSNDLLLQEEARPLAIAIFDEPSLTVHLGFDQAKVASCDWYQQSGHPYIQAIFQILDNLATLPYIQKLEFLISSGCDPLSNLQVQLDRQTFSDGTLPSSISDRLEKQQIYSFSK
>NZ_CP040094.1|WP_174712039.1|6110062_6111121_-|N-acetyl-gamma-glutamyl-phosphate-reductase
MGKFRRVPVGIIGASGYGEVQLVRLLMDHPEVELVYLGGESSIGKSFGDLYPHLAHTANLPIEAVEPEIIAHRCEVVFLSLPNGLACQIAPKLLEKGCKVLDLSADYRFRDLTTYTNWYGIERSDRTIAATAVYGLPELYRDRIAEAQLIGCPGSYPTASLLALSPLLKQGLILPETAIIDAKAGTSSSGRQLQTNLLLSEADNSIAAFNIGRHRHTPEIEQICSDLAGHELMIQFTPHLVPMVRGILATVYAKMSDPGLVRDDLITIFSAFYRNSPWVKVCGSGIYPQTKWANSSNLCYIGVEVDPRTGRVIVMSAIDNLIKGQAGQAIQCLNLMMGWDETLGLPKLGFYP
>NZ_CP040094.1|WP_174712038.1|6108627_6109917_+|phosphopyruvate-hydratase
MSKFLDTAIEAIAAREILDSRGRPTIEAEVHLANGVVGLAQVPSGASTGSFEAHELRDGDKSRYGGKGVLKAVQNVKESLAPKLLGLDALNQELLDRTMIAIDGSPNKSNLGANAILGVSLAAAKAGAESLDIPLYRYLGGPLANLLPVPLMNVINGGAHASNNVDFQEFMIVPIGATSFREALRWGAEVFATLSQVLDEKGLLTGVGDEGGFAPNLESNQVALELLVAAIKKAGYKPGEEVALALDVAASEFYKNGQYVYDGKPHAPAEFIDYLGQLVDQYPIVSIEDGLHEEDWQSWQLITQKLGSRVQLVGDDLFVTNATRLQRGIQEKAANAILIKLNQIGSLTETLETIDLATRNSIRSVISHRSGETEDTTIADLAVATRAGQIKTGSLCRSERVAKYNRLLRIEDELGDRAVYAGAVGLGPK
>NZ_CP040094.1|WP_174712037.1|6107936_6108371_-|lactoylglutathione-lyase
MRLLHTMLRVGNLEESLKFYCELLGMKLLRRKDYPGGEFTLAFVGYGDESDNAVIELTYNWGVEKYELGNAYGHIALGVDDIYATCEEIRNQGGKVVREPGPMKHGSTVIAFVEDPDGYKIELIQLGSQGSAAKQESQEQLVIQ
>NZ_CP040094.1|WP_174712036.1|6104705_6107348_-|ATP-dependent-chaperone-ClpB
MQPTDPNKFTDKAWEGIVKSQDIVRAYQQQQLDVEHLIIALLEEPTSLAIRILARSEVDPIRFQQQLEAFIQRQPKVGKSDQLYLSRSLDVLLDKAEEARVRMKDSYISVEHILLAFAEDDRIGRKILKSFSADAAKLEATIKLVRGSQKVTDQSPESRYEALQKFGRDLTEQAKAGKLDPVIGRDDEIRRVIQVLSRRSKNNPVLIGEPGVGKTAIAEALAQRMVNGDVPESLKNRQLISLDIGSLIAGAKLRGEFEERLKAVLKEVMDSNGQIVLFIDELHTVVGTGSSQQGAMDAGNLLKPMLARGELRCIGATTLDEFRKHIEKDAALERRFQQVFVDQPSVENTISILRGLKERYEVHHNVKISDSALVAAATLSARYISDRFLPDKAIDLVDEAAAQLKMEITSKPAELETIDRRLMQLEMEKLSLAGEEKGTAQTKERLQRIEQEIANLTEKQQIFNEQWQGEKQILEAISALKKEEDALRVQIEQAERAYDLNKAAQLKYGKLEGVQHEREAKEASLLEIQNQGSTLLREQVTEADIAEIVAKWTGIPVNRLLESERQKLLQLESHLHQRVIGQEEAVEAVAAAIRRARAGMKDPSRPIGSFLFMGPTGVGKTELARALAQFLFDSDDALVRLDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLSEAVRRRPYSVVLLDEVEKAHPDVFNILLQVLDDGRITDSQGRTVDFRNSVIVMTSNIGSEHILDVSGDDSQYETMRKRVMEGLRSHFRPEFLNRVDDIILFHTLNRTEMRQIIRIQLKRVENLLREQKIFFEISQAACDHLVESGYDPVYGARPLKRAIQREVENPLATKLLENTFISGDTIIIDKNENGLSFSKKVPVKVSVPQIAT
>NZ_CP040094.1|WP_174712035.1|6104243_6104546_+|hypothetical-protein
MSENAQEQKQPSLRETAQLPLEERHKILEPFIVAIAEDFLNDPELTEFSVLDGEDWENENENIIHVEDIKNIRNHDAFLNGYTLEDEELYDDYINQKQST
>NZ_CP040094.1|WP_174712034.1|6101362_6104158_+|tetratricopeptide-repeat-protein
MNPNLSDWDDDLPPEPEEAYQDLLRALRRKSGFGLFFVQCTPVEADNLIVKLPKEIPQKKIAVLRLVEAIDNLYQPVVEFVKDKQVDILLIKGLEYSLYKYEKRSFGEITEGQFSNLTSVPHILNHLNQQRERFRDDFPISFVFLLRSFSVNYFIHRAPDFFDWRSGVFELPTTPEVVDEESTRLLDEADYEEYLKLSPEQKIEKLLEIQDLLIEKHQSESRKASLLFELGRLLSTTNEYEAALTSYDQSVKIRPDLYQAWNSRGTALRNLGRYEEAVASYDQALKFKPDDHQAWYNRGNALRNLGHYEAAISCFDKVLEIKPDYHQAWNNRGTALRNLERYEEAIASYDQALKFKPNDHQAWNNRGIALGNLVRYEDAIISYDKAVEIKPDYHYAWNFRGNALGNLVRYEDAIISYDKALEIKPDYHYAWNFRGIMLNDLGRYEEAIASYDQALKFKLDYHEVWNNRGNALRNLGRNEEAIASYDHALKFKSDYHFSWNNRGNALRNLGRNEEAIVSYDQALKFKSDDHFSWNNRGNALRNLGRNEEAIASYDQALKFKSDYHFSWNNRGNVLRNLGRNEEAIASYDQALKFKPDDHEVWYNRGVLLRNLGRNEEAIVSYDQALEFKPDYHQAWNNRGNVLRNLERNEEAIVSYDQALKFKPDYHYAWYNKGRALFNLGQYYEAITNYETCLEIQADYYYAWEHRGYALYHLDCYSEAISSFDKVLEIQPSNYQCWNNRGYLLLKKYSFEGMSPVYEKALEIGFISQDFLNKKSLLLSDFEHCIEALSNFQKVLELKPDFEITWANRGFALYYLGRYKEAIESCNKALEFKYDDYVAWSNKGFVLMKLERYEEAIASFDKVIEIKLDNHTAWYNKACCYASQSNVELAIKNLQQAININPGEYREMAKTESDFYGIREDERFQALIQQKM
>NZ_CP040094.1|WP_174712033.1|6100040_6101366_+|ATP-binding-protein
MVNSSDLLAKLYNAFNPFEPLPAGDPKYVDCQDVRGDADIEQELGNRMRLADTNTCQLYSGHRGAGKSTELLRLKKYLENREFYVVYFAADEEDIDSEDAQYTDILLACTRRLLKDLKGIASPRPILDWLKGRWEDLKDLAQTPIEFESLGVEAQLTQFAKLTANLRAVPELRQKIRQKIDPYTVTLIQVLNEFLVDAKQHLPNGYKKLAVIVDNLDRMVLVKDGERTNYEEVFLDRSEQLQALDCHLIYTVPISMVYSTRATDLRDIYGDPQILPMIMVKTFEGDVYQPGLKKVKEVINKRVRQIAPELSLETEIFDSPQTLDRLCLMSGGHVRNLLLLTQDAIGRTEELPVSEKAVRRAITQARDTYRRAVENHQWCLLAEVSCSKRIINDDLYRSLMYNRCLLEYRYLDDDGEMQRWYDIHPLIQGIPEFKEAVAKLS
>NZ_CP040094.1|WP_174712032.1|6097783_6099772_-|molecular-chaperone-HtpG
MLEQGTISIHTDNIFPIIKKSLYSDHQIFLRELVSNAVDAIQKLKMVSRAGDYAGDIGEPEIEIAIDKDNKTLSISDNGIGMTADEVKKYINQVAFSSAEEFIHKYEGKSDQPIIGHFGLGFYSSFMVAQKVEIDTLSYQEGAQAVHWTCDGSPAFTLEESPRTTRGTTITLSLQGEEEEFLESARIKNLVKTYCDFLPVPIKLEGEVLNKQKAPWRESPSNLSQEEYLEFYRYLYPFQEEPLLWVHLNTDYPFIINGILYFPKMRPDVDVTKGQIKLFCNQVFVSDNCEEIIPQFLMPMRGVIDSTDIPLNVSRSALQGDRTVKRIGDYIAKKVGDRLKELFRDNREQYISAWKDLGTFVKFGVLNDDKFKKQIEDIIVFRTTAKLTEKVAAETPVVEVQSSDGDAWQDVTPSPSAENSTPTAPYTTLKEYLERNKERNENRVFYSTDETTQATYIELHKNQGLEVLFMDSFIDTHFINFLEREYQDVKFTRVDSDLDNTLLEQDKDKEIVDPKTNKTRSETIKELFEKSLNKPKLNIRTEALKSDDPQGTPPAIVLLPEILRRLREMNAMMQQGTAEFPEDHILLVNTAHPLIQNLANLNQGSIIQGDGQSSTDQLVNLICQHVYDLALMSQKGFDAEGMKSFVERSNEVLTKLTEQASK
>NZ_CP040094.1|WP_174712043.1|6117912_6118434_-|GNAT-family-N-acetyltransferase
MTSDGEARWNFVPIDKKYQRNSFDCDYVILNDYLKKYARQNHNKGIAKTFVAISASGSLKIDGYYTVSASIIEYESLPEYCQSGMPAYPIPAMLIERLAVDNSVKGQGLGGELLADALYRAVRVSQEIGMYAVRVDAIDLQAKEFYLKYEFIPFQDNKLSLFLPIATIVREFG
>NZ_CP040094.1|WP_174712044.1|6118423_6118708_-|DUF1778-domain-containing-protein
MSETSSAKDCRIDLRVTQEQKELLERAASLKGISLSAYTLFHVLPVAKQDIDANERLVLSNLDRDLFMSIMENPPELKGKLKSAIHKYRQKYDK
>NZ_CP040094.1|WP_174712045.1|6118910_6121541_+|U32-family-peptidase
MKSDRPQLSPQRPELLAPAGNWECAKAAVENGADAIYFGLDRFNARMRAENFTEADLPQLMAFLHRRGVKGYVTVNTLIFPKELAEAQQYLCTIIAAGVDAVIVQDVGICRLIRHLSPDFPIHASTQMTITSAAGVEFAKSLGCQLVVLARECSLQEINKIQQQIALQETSLPLEVFVHGALCVAYSGQCLTSEALGGRSANRGECAQACRMPYDLIADGKVVNLKERKYLLSPQDLAGLDVLPDLVKSGVTCLKIEGRLKAPEYVANVTRVYRQALDGVMEELERPNPLTPFPCREGGIKAPLFVSERGWGRGQLDQEHYNLEMAFSRGLYTGWFGGINNQELVHARFGKKRGVYLGEVTRIHNEQVTIKLEAPVKPGDGIVFDCGHPEAKEEGGRVYAVVSKGKEAMLTFGRNDLNLRRLHIGDRIWKTNDPELDKQLRQSFAGENPQFQRPIDVEVYGEIGQPLIAIARDRLGNIVQVESAISLVEAHTKPLDTDRLQEQFGRLGNTPFVLEKLTNHLSTSLMLPVSELNRMRREIVVQLEELRSQPKRWQLRSDVSFQDLLPSSSSSSPLSPSLIVLVRNLKQLQAALKAGVETLYCEFEDPRAYREAVQMVRQQQQKNKADNSSLLTPFCTDAINRVSQLPTIWVAPPRITKPGENWILQQVRACEADGYLIRNYDQLQFFAQDRCIGDFSLNIANSLTADYFQQHFGLERLTASYDLNITQLQDLLTSCPPQWFEVTIHQHIPMFHMEHCVFCAFLSTGTDYTNCGRPCEKQEVKLKDRVGSEHILKADVGCRNTVFNGTAQTGAEYVQRLIELGLSHFRVEFVNETPDQVTKIIHRYRQLLQGEITGSQLWRELKLQNQLGVTRGPLGL
>NZ_CP040094.1|WP_174712046.1|6121767_6123099_+|phosphoesterase
MQLRLFRWMILSVAFVAGNLLSTHMAVAEKGKSVGRVESLARGKRNERDERDERGQRGRRLKHIFIIDMENHNFTQPSSDTKAPNQIFGNPAAPYQNSLITPGNPNAVHVSYAGAYHNVLATPSGNNPSIHPSEPNYIWQEAGDNFGVLNDNDPFKNPGGTNQNTTLHLSALLDKAGIPWKSYQEDIDLAKNANGQLTSTVLPKNQWTVPLTSFSGTSPDYTNPYNGSHQYNFAAKHDGHLFFTDSNGGNDPTPANPLASKYAPLQQLEEDLAHNQLEEDLAHNKVASYTLITPDQFNDSHTALSNGFDYHGVHYTGDQSAIAQGDNFLSQIIPKIMSSAAYKDGGAIVIWWDETEGTNQNDFSHTIEEIVISPLAKGNAYESFVNYTHSSDLKSWEELFDVYAPGGGFLGDANSPNTNDLSDLFKEGALTPKGQRQWTTKDE
>NZ_CP040094.1|WP_174712047.1|6123234_6124122_-|LysR-family-transcriptional-regulator
MELRHLRYFVTLAEELHFGRAAERLHIAQPPLSQQIRQLEKELGFELFHRTKRNVQLTEAGQVFLGEVQQIMRQLQQAIQVGQQTSRGEIGQLVVGFVSSAAYNILPTILRTFRSYVPGVSIELHELTTDQQLEWLREGRMDVGLLRPPVEENRFSCETIFQESLMVALPEAHLLASQSDVCLASLANEPFILFPRILAPGLYDLIISVCQQAGFSPKVAQEAIQMQTIVSLVAAEMGVAIVPASLQNLQRIGVVYKTLEEAIPKVSIAMIWRKNETSPIVQRFLEIVKQAAQQW
>NZ_CP040094.1|WP_174712048.1|6124256_6125033_+|methyltransferase-domain-containing-protein
MNNLSIAKNYWDATLYEDKHAFVWQYGEDLLKFLNLQPGESILDLGCGTGQLTEKIAQAGAEVIGVDFAPAMIEKARANYPHIRFDVADASNFQVDKPLDAVFSNAVLHWVKEAQSAIASIHQSLKPGGRFVAEFGGKGNVQAIATALESALEAINIPAQALNPWYFPSIGEYASLLEQQGFDVIHAMLFARPTPLAEGEAGMSNWIGMFASSFLAGLSSEQQIQVIRVVEEYLKPTLYQKGTWTADYRRIRIVAIKV
>NZ_CP040094.1|WP_174713774.1|6125162_6125636_+|hypothetical-protein
MALTTLLVPPSQAQTHSIPSPSNAPLELELLTKPKDYIITANTIHPEGLTVPSLWWAQQNSEKKLLDNWIAYPASDKEPARVDLIVNQQIWSLLEYIERYDFINRLGSAARNFGYNVRVFNYQKEPLATYTCNFSTSPALCSIQTNVKNKIGLQRLL
>NZ_CP040094.1|WP_174712049.1|6125717_6126896_-|extracellular-solute-binding-protein
MDRRSFLLGTSTLALSQLLFGCGGNRQTQLKVQLLKGSIPGQVVNQFHKSLQQQVQLKFAPVEQIEDLFQQLQNWQKKPKATDEQGWSRFIPFRQSQKTADADLVTLGDYWLKAAIEQKLIQPLQEVQGNQLKQWPALDERWKKLVTRNDQGNLDTQGKVWGAPYRWGSTVIVYNRDKLRELGWTPKDWSDLWRDEMQQRISLLNQPREVIGLVLKKLGKSYNTENLDQVPNLEKELQTLNQQVKFYSSNNYLEPLIMGDTWLAVGWSSDVLQVLGRYPQLGAVIPKSGTAIWADLWVRPAGIAKNTLSDQWIDFCWQPSIAKQISVLTKSNSPISTNITAFDTQESLLSLLQSDVYDGLRLRAVFDKSEFLLPLPPSAIKQYESLFAKIKV
>NZ_CP040094.1|WP_012409876.1|6127252_6127621_+|hypothetical-protein
MELLQQQILTLSEKLDALCQVIEQLDAKVTQTFSECSIANTQAKDNYQENGAAGGYQLRRISLNPEMEHKDVLTDGIYLDMHRQSGDNITPEIQIQRLTAQLTAAYNRIAALEEQLLRERIH
>NZ_CP040094.1|WP_174712050.1|6130513_6131707_-|TIGR00303-family-protein
MPNSQIRIYTQKEQGEEWLRRYRGSLPVFGCVLGFTETGLIPGISAAGRTPEDRKYTACADAEFLYYGPEHKPQHPLPPLAAGASPVLISRAVFESLNIPVHLFNAGLPHPPAVPLIDLGGASAKCLSGGAAMEITTVHHLFKQGLFWGERLAANMQQSYVIFGECVVGGTTTALAILTALGIDAAGKVNSSHPICNHGQKWALVQAGLEKAGSRGQGAGGRGQDEIFQSQILTSVDPLKIVAAVGDPMQVVVAGMAIAASRSCGVMLAGGTQMLAVYALMSAIAQAYALSWQPEAVVIGTTRWVAEDPTGATVDLALSLKKGNFSPSGTTPPLLATDLSFVDSRYPQLRAYEQGFVKEGMGAGAACIAAHLSQNWQQDQLLAAIESQLERLSTAFH

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Crispr_ID: NZ_CP040094_29

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040094_29

6359181-6359259

Orphan

N:A

Consensus_repeat	Method
GCTTTGGCTTCGTTAATCTGCTGTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040094_29

>merge|NZ_CP040094|29|6359181-6359259|CRISPRCasFinder
GCTTTGGCTTCGTTAATCTGCTGTTGCAAGCTAGCGATGATTTGATTGCGGTTAGCTTTGGCTTCTTTAATCTGCTGTT

>NZ_CP040094|29|28|6359181-6359259|CRISPRCasFinder
GCTTTGGCTTCGTTAATCTGCTGTT	GCAAGCTAGCGATGATTTGATTGCGGTTA
GCTTTGGCTTCTTTAATCTGCTGTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040094.1\|WP_174712227.1\|6366337_6367639_+\|adenylate/guanylate-cyclase-domain-containing-protein	unknown	unknown	gnl\|CDD\|306677
NZ_CP040094.1\|WP_174712224.1\|6361776_6363108_+\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|236722
NZ_CP040094.1\|WP_174712219.1\|6355064_6356570_+\|NACHT-domain-containing-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174712229.1\|6371356_6373201_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|315987
NZ_CP040094.1\|WP_174712225.1\|6363386_6364601_-\|DUF790-family-protein	unknown	unknown	gnl\|CDD\|368530
NZ_CP040094.1\|WP_174712216.1\|6353062_6353596_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174712230.1\|6373332_6377445_-\|response-regulator	unknown	unknown	gnl\|CDD\|236848
NZ_CP040094.1\|WP_174712220.1\|6356729_6357434_-\|DevA-family-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|274374
NZ_CP040094.1\|WP_174712226.1\|6364530_6366132_-\|DEAD/DEAH-box-helicase	unknown	unknown	gnl\|CDD\|223989
NZ_CP040094.1\|WP_174712115.1\|6346830_6347448_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226144
NZ_CP040094.1\|WP_174712228.1\|6367933_6371074_+\|PAS-domain-S-box-protein	unknown	unknown	gnl\|CDD\|274362
NZ_CP040094.1\|WP_174712215.1\|6350405_6352850_-\|after-VIT-domain-containing-protein	unknown	unknown	gnl\|CDD\|274782
NZ_CP040094.1\|WP_174712217.1\|6354059_6354509_+\|HNH-endonuclease	unknown	unknown	gnl\|CDD\|238038
NZ_CP040094.1\|WP_174713784.1\|6377787_6379971_-\|Eco57I-restriction-modification-methylase-domain-containing-protein	unknown	unknown	gnl\|CDD\|377679
NZ_CP040094.1\|WP_094331432.1\|6361049_6361538_-\|translation-initiation-factor-IF-3	unknown	unknown	gnl\|CDD\|234582
NZ_CP040094.1\|WP_174712223.1\|6360254_6360869_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP040094.1\|WP_174712114.1\|6347529_6348108_-\|antA/AntB-antirepressor-family-protein	unknown	unknown	gnl\|CDD\|369825
NZ_CP040094.1\|WP_174712221.1\|6357521_6358697_-\|FtsX-like-permease-family-protein	unknown	unknown	gnl\|CDD\|130253
NZ_CP040094.1\|WP_174712218.1\|6354659_6354866_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174713783.1\|6353646_6354048_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP040094.1\|WP_174712227.1\|6366337_6367639_+\|adenylate/guanylate-cyclase-domain-containing-protein	gnl\|CDD\|306677	pfam00211, Guanylate_cyc, Adenylate and Guanylate cyclase catalytic domain.	8.17941e-81
NZ_CP040094.1\|WP_174712224.1\|6361776_6363108_+\|DEAD/DEAH-box-helicase	gnl\|CDD\|236722	PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional.	0
NZ_CP040094.1\|WP_174712229.1\|6371356_6373201_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|315987	pfam13424, TPR_12, Tetratricopeptide repeat.	2.31093e-07
NZ_CP040094.1\|WP_174712225.1\|6363386_6364601_-\|DUF790-family-protein	gnl\|CDD\|368530	pfam05626, DUF790, Protein of unknown function (DUF790). This family consists of several hypothetical archaeal proteins of unknown function.	0
NZ_CP040094.1\|WP_174712230.1\|6373332_6377445_-\|response-regulator	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	1.10034e-130
NZ_CP040094.1\|WP_174712220.1\|6356729_6357434_-\|DevA-family-ABC-transporter-ATP-binding-protein	gnl\|CDD\|274374	TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.	1.1256e-147
NZ_CP040094.1\|WP_174712226.1\|6364530_6366132_-\|DEAD/DEAH-box-helicase	gnl\|CDD\|223989	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].	3.52894e-100
NZ_CP040094.1\|WP_174712115.1\|6346830_6347448_-\|hypothetical-protein	gnl\|CDD\|226144	COG3617, COG3617, Prophage antirepressor [Transcription].	3.42614e-34
NZ_CP040094.1\|WP_174712228.1\|6367933_6371074_+\|PAS-domain-S-box-protein	gnl\|CDD\|274362	TIGR02956, sensor_protein_TorS, TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072). [Signal transduction, Two-component systems].	1.27028e-59
NZ_CP040094.1\|WP_174712215.1\|6350405_6352850_-\|after-VIT-domain-containing-protein	gnl\|CDD\|274782	TIGR03788, marine_srt_targ, marine proteobacterial sortase target protein. Members of this protein family are restricted to the Proteobacteria. Each contains a C-terminal sortase-recognition motif, transmembrane domain, and basic residues cluster at the the C-terminus, and is encoded adjacent to a sortase gene. This protein is frequently the only sortase target in its genome, which is as unusual its occurrence in Gram-negative rather than Gram-positive genomes. Many bacteria with this system are marine. In addition to the LPXTG signal, members carry a vault protein inter-alpha-trypsin inhibitor domain (pfam08487) and a von Willebrand factor type A domain (pfam00092).	2.76247e-138
NZ_CP040094.1\|WP_174712217.1\|6354059_6354509_+\|HNH-endonuclease	gnl\|CDD\|238038	cd00085, HNHc, HNH nucleases; HNH endonuclease signature which is found in viral, prokaryotic, and eukaryotic proteins. The alignment includes members of the large group of homing endonucleases, yeast intron 1 protein, MutS, as well as bacterial colicins, pyocins, and anaredoxins.	0.00272334
NZ_CP040094.1\|WP_174713784.1\|6377787_6379971_-\|Eco57I-restriction-modification-methylase-domain-containing-protein	gnl\|CDD\|377679	pfam06616, BsuBI_PstI_RE, BsuBI/PstI restriction endonuclease C-terminus. This family represents the C-terminus of bacterial enzymes similar to type II restriction endonucleases BsuBI and PstI (EC:3.1.21.4). The enzymes of the BsuBI restriction/modification (R/M) system recognize the target sequence 5'CTGCAG and are functionally identical with those of the PstI R/M system.	7.29678e-66
NZ_CP040094.1\|WP_174712223.1\|6360254_6360869_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	2.37822e-15
NZ_CP040094.1\|WP_174712114.1\|6347529_6348108_-\|antA/AntB-antirepressor-family-protein	gnl\|CDD\|369825	pfam08346, AntA, AntA/AntB antirepressor. In E. coli the two proteins AntA and AntB have 62% amino acid identities near their N termini. AntA appears to be encoded by a truncated and divergent copy of AntB. The two proteins are homologous to putative antirepressors found in numerous bacteriophages, such as the hypothetical antirepressor protein encoded by the gene LO142 of the bacteriophage 933W.	1.9553e-05
NZ_CP040094.1\|WP_174712221.1\|6357521_6358697_-\|FtsX-like-permease-family-protein	gnl\|CDD\|130253	TIGR01185, membrane_spanning_subunit, DevC protein. This model describes a predicted membrane subunit, DevC, of an ABC transporter known so far from two species of cyanobacteria. Some experimental data from mutational analysis suggest that this protein along with DevA and DevB encoded in the same operon may be involved in the transport/export of glycolipids. [Transport and binding proteins, Other].	1.1582e-168
NZ_CP040094.1\|WP_094331432.1\|6361049_6361538_-\|translation-initiation-factor-IF-3	gnl\|CDD\|234582	PRK00028, infC, translation initiation factor IF-3; Reviewed.	1.27262e-57

>NZ_CP040094.1|WP_174712221.1|6357521_6358697_-|FtsX-like-permease-family-protein
MIGFIQQLRQRTPLGWLQLSHEKSRLLVALSGIAFADILMFMQLGFQTALFDSNTKLHNSIQADIFLLSPQARNVLNASTFTRRRLYQAMDIQGVKSAEPMYVNIVDWKNPKTRQKTSVLVIGINPEKQAFNLPDVNSQIDRVKLPDTLLFDRASRGDYKEAIAQVEQGLPVTTEIDRRTITISGLFSIGASFAADGNLITSDQNFLRLFPKREASSVSLGLIQLEPGYDPKQIKAALESHLDDDIKVLTKAEFIEFETDYWKKNTAIGFIFSLGVGMGFMVGVIIVYQVLSTDVNSHIKEYATFKAMGYNNLYLLGVVFEEAIILAILGFIPGMIAPLGLYHLTRNATNLPLYMTVARATTVLILTMIMCIISGAIATRKLQSADPADMF
>NZ_CP040094.1|WP_174712220.1|6356729_6357434_-|DevA-family-ABC-transporter-ATP-binding-protein
MPAVISVKNLDHYFGSGQLRKQVLFDINLDINAGEIIIMTGPSGSGKTTLLTLAGGLRSAQSGSLQILGQELCGASTAQLTQVRRNNGYIFQAHNLHGSLTVLQNVRMGLEVHNNISPAEMKTRSAQMLEEVGLGHRLNYYPDDLSGGQKQRVAIARALVGRPQIVLADEPTAALDSKSGRDVVNLMQKLAKEQDCTILLVTHDNRILDIADRIVYMEDGKLVNDRAVIVNSRV
>NZ_CP040094.1|WP_174712219.1|6355064_6356570_+|NACHT-domain-containing-protein
MSNSLKASTAGLAIVDKSRQRLGWTKTNTARWWQDAHTSRATLRRFWQGDRIQREIFIAICQAVGIVNWEAIAESSNADLESIADITTPYLECNEAPDLESFYGRNQELAQLEEWITSQNWKLVTINGIAGIGKTALALALVDRIQSKFDCLIWKSLQTSPSLISLLNSLLNSFEQSVAQNIQQGTAQLIQQLQKRRCLLILDEFEATFSQPEDLSYGQFIQQLSRERHQSCILISSREQINTGEINTKTFRCLNLKGLQKIEAVELLQSRGLTGKELGLSVLIQLYRGNPLALKLVTPLIQSVFAGNVAAFLSQHTLIVGDRLRVILKQQFEQLSGLEQDILYWLAIWQEPVSFSRLQTHLLISVDPAMVLEGIVALERRSLLEKWVSDYESSFTLQPLVMKVVTDELVEHAAQEIYKVVQSNDIRHFQILRTHWLLRPGTDDIAGDRILTQLWKKLWHLYGATLPQIFNQILLLLNGQSPLAMGYIKSNVAILSGIESV
>NZ_CP040094.1|WP_174712218.1|6354659_6354866_+|hypothetical-protein
MNAHKIELVLTEDETLTLHGLPFHAGDAVEVIILEAKPPDNQVALKFQLDTNLYPLHDTQPYHYENPF
>NZ_CP040094.1|WP_174712217.1|6354059_6354509_+|HNH-endonuclease
MNLEEKELNELFKIADKIGSKRYHKLTHQDFENYRKFDYWRYVNGDYECGTTQESKTWVRDNSDCYCPICGDKYFEKGGKTIDHKLPRSQYPWLSMEFKNFWVICLMCNQQKGEMHWYEYEHYIFVRYPDYYIGVKVARPSYLLQSLKE
>NZ_CP040094.1|WP_174713783.1|6353646_6354048_+|hypothetical-protein
MSYRDTQRVNSKNRNKLKQEDIHWLKTEGYKNVGWNNLISLYHKIKDFLDKYQFDDLTLEELFLEADRIGNKYFTVQEIQETNHRLAKEVNEIAEEIDKQFPDTEIEFIDFSNKPKKTYRKQNNQKLYRTVKY
>NZ_CP040094.1|WP_174712216.1|6353062_6353596_+|hypothetical-protein
MNKSQAIKLLEGEGWTTADAKRALEKIDFNINPDEITIRRAISHFAGSELINRQRLQAAQKGLVTKKTNELERKEKEYATKIDRLINSQREEKDKREAEIQSLYSKSNLVEDRLKAITSQNKDLIVVNEQLMKDNKTLKNLIDEIRLKLAINTKKILQYEDSEIRKAVIHLFKSTLG
>NZ_CP040094.1|WP_174712215.1|6350405_6352850_-|after-VIT-domain-containing-protein
MTQTLEQQPSGLYLQNFNQQIAFPLKHTEVKAKIAGNISRVEVTQSFENPFTTTLEAVYIFPLPDEAAVDDMLIRIGDRTIQGSIKKRQEALAIYEQARKQGQTAGLLEQERDNIFTQSLANIKPGEQIDVIIRYSDSLKFEGGNYEFVFPMVVGPRYIPGITIEENAVGGGSAIAPMTLNQDTDLVPDASRLNAPILPAGMRSSHDINVTIEINAGVEIQDINSPSHQIQIIREGQLVNVKLGGGDTIPNKDLILRYQVSSNNTQTTTLTQADERGGHFALYMIPAVEYRPDEIVAKDMVFLIDSSGSQSGEPLMQCQELMRRFINGLNPDDTFSIIDFSDTTQQLSPVPLANTFQNRLLAINYINRLNADGGTEMLGGIRTVLNLKPTNPGRLRNIVLLTDGYIGNENQILAEVKQRLQPGTRLHSFGAGSSVNRFLLNRIAELGRGIARIIRHDEPVDEVVEKFFHQINNPVLANIQLQWEGDGESPIMYPSTPPDLFAEQPLVLFGRKPDAHSGKLHVTGITGGGRRYQHSFHLDFPQTGNPAIAQLWGRSRIKDLMNQMVSGDTKGGVEAVIDTALTYQLLSQYTAFVAVSDDIRVNPNQDSISVQVPVEIPEAISYEGIFSNVSFGAAPGGGMASSRQKAKKQSAPSPMSVLPPPSPMSAPAKPMQRFEEMESLSEIELGYADDFSNLDSLLSVSESSMPQLEDLKALRKEESSVPHLQIVSVTGLNQQMISLLTQYLQAIQLPRGFGGDLVFEFQLSQGRVRQLLLDEQASSLKEQTVIELIKRSLLAWLPSQTLTSTVVLTLRIQP
>NZ_CP040094.1|WP_174712114.1|6347529_6348108_-|antA/AntB-antirepressor-family-protein
MTQLTFDKTLALSIYNSDEQFPIDLDDAWLWLGWASKQKALDCLVANFEEGTDFLTLGKKASNGGRPGKHIMLTVDCFKCFAMMSGTEQGKVIRKYFIECESIAKEANIKALPSVSTSKLTELKANDALVRHHIRVLESELAEKRMELQSIQKELFTEAKAVLDANPELARAVLDAREIIERAKQANKYLSV
>NZ_CP040094.1|WP_174712115.1|6346830_6347448_-|hypothetical-protein
MSNLSIFSFETHDIRFVGTAIDPWWVAADICKALEITNPSTAISKLDDDEKTRDITLNDVSGKFASTRAQKVWCVNEPGLYALVLTSRKPSTKRFKKWLTSEVIPAIRRTGSYSIPNNAHVRTSTTFDKKVAELMKRKELLSERIDATTKSLKSLQEQYDSLEQEYSRLYVEHYRHEGEEYIKHKQIVGSHNPYLSKLNDIKTCH
>NZ_CP040094.1|WP_174712223.1|6360254_6360869_+|TetR/AcrR-family-transcriptional-regulator
MVRIKTDEVDRDNSLDKVEQILQGAMQEFLQNGYAGTSMDRVAVAAGVSKATVYSHFQDKEGLFKVLIEQLASKKNNSIFGTVPIEGEPRAVLRGIGTKALELMNSDQEHSAFMRVLIGESGRFPELAQICVHAMIKPVTETLTQYLAAPELKIPDPEATARILLGALVHFHITQDVMHGRDIIPMESDRLIDALTHLITKCAD
>NZ_CP040094.1|WP_094331432.1|6361049_6361538_-|translation-initiation-factor-IF-3
MAIQKQLINSQIKSPHVFLIDHENNNRGLIDTNEALQLAESLELDLVVVSQGKEAPIAKILNYGKLQYQKKKRQSQSARPTVKEVRFGLNVGIADYNLRIEKAVGWLSKGDSVKFAIRLRGREHQYRDQAGELLDRIAKDLSQVGKIQSLDKRSLIVQVIPA
>NZ_CP040094.1|WP_174712224.1|6361776_6363108_+|DEAD/DEAH-box-helicase
MNFSTLGLSNEIIRAVTERGYTEPTPIQIQSIPAVLSGSDLLAGAQTGTGKTASFTLPLLHRLSSQKNVKVTSNGYRPIRALILTPTRELAAQVEESVREYGKYLQLNSMVMFGGVGINLQKQRLKNRVDILVATPGRLLDHVQQGTLNLSHIEILVLDEADRMLDMGFIHDIRRILALLPKQRQNLLFFATFSDKIKALAAGLLNNPKMIEVARRNVTAETIAQKIYQVDRDKKRQLLSHLIRRDNWYQVLVFTRTKYGADRLVKQLGEDRIQALAIHGNKSQPVRTNALAKFKNGSLQVLVATDIAARGLDISELPHVVNFDLPNVPEDYVHRIGRTGRAGASGEAVSLVCVDEYSLLTDIEKLIEQRLPREVVAGFGPNPDTTAEPIPNGRQHRPKSGGEKRSPRTPKPLQRTSAKRKAAPPATNGEKPGARSSASRRSK
>NZ_CP040094.1|WP_174712225.1|6363386_6364601_-|DUF790-family-protein
MLPTDLLMHRQNGEEIIPKRLKIDQKTSELAIELINYFQSAVGKTQGVLERQLTDFEGDSTDYRVKRGLAYILKSSFCTFEVVSPLEPQMLRERVFSLAAKSVSSRESTQATLSKIADELTQELEREVLLEQVRNGLYADLSENKILTVFDAPTAPDLLNRYNLSQVQGVFYKASKLVLNAHRNVPGEYKLLFRYLKLFQLMAYIEGDADHGFTITIDGPTSLFNPSTRYGLAIAKLIPALLHVTKWSLASILQTRDAYTNTWKTGRFTLNSECGLVSHYPPGKPYDSMLEASFADKWDALKSGWALEREVDLIPIPGSVMIPDFRLVHSDGRTFLLEIVGYWRPEYLQKKFSQVRRAGRDDLILAISERLNLEKAGVKLNDVPARIVWFKDKLLPKAVLAVID
>NZ_CP040094.1|WP_174712226.1|6364530_6366132_-|DEAD/DEAH-box-helicase
MARTPTLNFDRGTLILHPPPRGKGWMDYATWDDRVEKFRIPAIRYRSLVEALQAEEVNFIDEAKQFYPVDLVPTLEMEPYAHQTEALAAWKLAGRQGVVVLPTAAGKTYLAQMAMQSTPRTTLIVVPTLDLMHQWYAHLVAAFPDAEVGLLGGGSRDRTAILVATYDSAAIHAETLGNQYALIVFDECHHLPTDFNRVIAEYAIAPYRLGLSATPERTDGKHADLNILIGEEVYRKRAEDLAGKALAEHEIVQIKVKLSQLERERYNQLIQTRNDFLKQSKISLGSLQGWQMFVQMSARSQSGRRAMLAHREAKDIALGTDGKLRILINLLAEHYPARILIFTADNATVYRISQELLIPAITHQTPVKERHEILTKFREGKYNTLVASHVLNEGVDVPAATVAIILSGTGSAREYTQRLGRILRKGNIENKQAILYEVVAEDTSEEGTSARRRGERRDEPQRRGGRREEEEKKGKLEVVYGSGKERSLKAAEQLEINYSTGSSKSKIQNSDVTDRLTDASPKRRGDHSEETED
>NZ_CP040094.1|WP_174712227.1|6366337_6367639_+|adenylate/guanylate-cyclase-domain-containing-protein
MINPSNSDKTQLDALISHGMSNRQTNNNLAESYKEQRQSFLLKRLQLQAQIMLVAGLTLIAFFLWANSYLEAKIYAFKIGIVVELFTLICWGLCKTPIGRRHPDLIFLSLCWAVTCVVQIDIALLFNNLEPRSNIWTLMFLTQATIIPVQWWMHLISQLGTIICYLTLYLLYNPILKNPSAFYAEQGLYFFWTCIICVFSVFLYERLRKKEFYARKAMELAQQKSERLLLNILPGMIAEQLKQQPTTIADSFMEVTVLFADIVGFTELSARTSPTELVEFLNTIFCLFDQLAEVHGVEKIKTIGDAYMAVAGLPNQSNDHASAIANMALDMQNSIAIFNAENNQLFSIRIGISTGPVVAGVIGLKKFAYDLWGDTVNTASRMESHGIAGSIQVCEATYQLLKDKYLFHKRGLIQVKGKGKMMTYILKEVNYKN
>NZ_CP040094.1|WP_174712228.1|6367933_6371074_+|PAS-domain-S-box-protein
MKGTRSLLAPYAVALLAVSSTLLLTLLLQPLLKPTIFLLFFAAVAVSAWYGGMEAGLLATALSTLTVSYFFLEPVFSLSVASLDNIRRLGLFVLVTTFITLLNSELRTAKQHLQMSLQKLKLSEAKFRRLVESNIIGVIVANMDGAIAEANDAFLRMVGYSQEDLVAGRVRWRDLISAKYIEANNSAMPTAGYAYAELKTKDVCQPFENEYICKDQNCVPILLSSALLENNSNDIISFVLDLSERKQVELALCQSEERYRAFLEQSSEGIWCIELEVPISPDCPADEQIQHFYQYVYLAECNNVMAQMYGCSRTEEIINARLGDFLVPSDPHNIAYLRNFIRSNYRLIDAESHEIDKQGNSKYFLNNLVGIVENGLLVRAWGTQRDITERKRAEAALCQREDELRLITNAVPVQISYVDTQQRYRFNNKGYEDWFGLSASEIHGKHIKEILGESVYQSILPYVEAVLSGEQVTYETQLPHKDGTHHYINVNYVPQFNQQGKVEGFVALITDITLHKLAEAALKQSEKRLKTLTEKVRIIPWEVNATTGNFTYVGPQTIEILGYPLSDWYIDDFWAKHIHPEDREWAIQYCQESSLTLNNYEFEYRMLAADGRIVWLYDIVNVVRDDNGPQMLHGFMLDITDRKQAEQEREQLLEREQVARADAETANRMKDEFLATLSHELRTPLNAILGWTQLLRSRKFDEATTARALETIERNTRSLTQLIEDVLDVSRIIRGTLHLSMHRVKLVPLLEAAIDTVRPAAEAKEISINCRFDGEVGVIVGDVNRLQQVVWNLLSNAVKFTPKGGRVDVQLERIESSVQIRVSDTGMGIAAEFLPHVFERFRQADSSITRSHGGLGLGLAIVRHLVELHGGTVSVESPGIGQGATFIVNLPMKAVYVEANAAEQLSAVVNIQEVNNYLPRLDDLRVLIVDDEEDARHLLTTILEQYGAQVIAVASASDALLALQKVCPHIMVSDIGMPQEDGYALIRQVRALPAERGGRVPAVALTAYARAEDRTQALLAGFQLHVPKPVNPAELAAVVANLTGRT
>NZ_CP040094.1|WP_174712229.1|6371356_6373201_+|tetratricopeptide-repeat-protein
MSDSLPLRDRYLALIDEIVESTLKGKISSVDMVYQMLLKGITSGTGEVFELVLSDRLNALQSQVDSEKDELKKGKATRSLRAIKTIQSQWQRWQEQNKTTVAIASAVTEITTATADERLATFLRITDPNQKYPLNLQQLQQLSKALQQFAQADADLQQFSEGITRGLASWQRLQDNLLSWMYEQKEALGFGGVPGERGPWASWAKQLNSELPKALLRTLAMEESAIEFAQRQRGITLRDWVEMALILQFLQRGLINWFDQQAYDVKAGPKLSISTFLTFAVIWSQLASGFASIGTVYADACSQIMLQILRTFAQRPYFPFYGGIFASFTGTYLRDALDYLDEPLRRGEGTQEKARILTLLGYSQRALGQYQRSIDFHQQALEIARNAGDRACEIANLNHLSRTYVQQQNYAEAINYSQRALILSRQAGDRTGEANALVNLGYSEVMQAQELENLEPETYESAINYLEQGLKLSEKLGDIQSKALCVSSLGIAYLVIGEHQTAIKYLEDGFKTAQVSGDLYLQGRNLAYLAEAYYHLQNAEKTVYTGCLGMYLLEQIASNEWRQAAGLLTILQGQIGTEAFQNFLQQHRPKIIAVIGVDGYDYIPKLLEVYKQDM
>NZ_CP040094.1|WP_174712230.1|6373332_6377445_-|response-regulator
MFISSTALTEADLESAIVRNPLIVSPSTSVMAVIAQMSGSRTVCSSSREADMEIEARHLEARSSCVLIVEGNQLLGIFTERDVVRLSSQMRRLDNLAIADVMAHPVISLHQSAFTDLFLAVNLLQQYRIRHLPLLNEQDEIVGLLTHESLQQLSRPIDLLHLRLAKDVMTSGVICAAPSVSMLAITHLMAENRVSSVMLVKERVAQGQLIQVPVGIVTERDIVQFQALELDFEHFQAEVVMSTPVFSVSPDYSLWRVQELMRQYLVKRIAVTGTQGELLGIVTQTSILKVLNPIELTNLVEVLEYQVNRLEAEKLALLKNRNAELEELVQQRTATLKAKAEREQLIATIARQVHSSLNLQDILDTTVQEVRSLLNCDRAMILQFQPDLSMVVVADSVKNGYASYLGKQVHDTCCATDVFDLYHHEEIRVVSDIYTAQISDCHRELLKKLQTRAKILVPIIQSGNLWGLLNVVESLAPRFWQAEEISLVQQLSTQMAIAIQQATAYQQLKTAENELQQQNLRAKLLANVTLKIRESLQIDEILKTSVTEVQKLLKADRVLIFQLESNYSLTALQEAVLPNFPTVLGQNITDTCFEEKYIQKYREGRIQTITDIEQANIQPCHIELLQRFAVKANVVVPIILKHELWGLLIAHQCSHSRQWISWEIELLGELANQIGIALTQAKLLEAETLQRQELEMARQQAELASEAKSSFLANMSHEIRTPMNAVLGMTGLLLETSLTPEQRDLAETISVSGDALLYLINEILDLSKLEAGEMMLETLDFDLSSCVEEVLELLAPQAHHKGLKIAALIHRNVPTYLQGDANRLRQVLMNLIGNAIKFTSAGEVVIRAELQSENYATATIKFSVIDTGIGMALQDQSKLFQPFTQVDASITRKYGGTGLGLAICKQLVNLMGGEIGVESQIDNGSKFWFELAFTKQHQAVYQNHEHELLSQRRLLVVDDNATNRKIIYHQATRWGMHVDEASCATTALQALQQSVEQGIPYDIAVIDMQMSEIDGMNLGIQIKTNPTIADIPLIMLTYTNQTDEVQRALNIGFANYLVKPVKPSRLFDTIVNVLGSQAKLNDSHVYRIEQPFVPIQVETIHDSTKPKLKLLLAEDNLVNQKVILKQLQNLGYKADVVANGQEVLQILDKIPYDLIFMDYQMPILDGLETTREIRRRSTSSFASHRQPIVVALTANAMAEDQQNCRDAGMDDYLSKPVTKKDLAVVLERWSQIIITAQAVTIADSTFSNQDSQNRNFIDLLIDWEYLHQLSDNDTELELEFLQLFQENSQSHLESTKAAFAAQDFQQIAWEAHHLKGSSGNMGVRLMQQSAEELELLSRKHETAGMVNLIADLEEFINRIQDFLIKKNLNM
>NZ_CP040094.1|WP_174713784.1|6377787_6379971_-|Eco57I-restriction-modification-methylase-domain-containing-protein
MDFDCKFLVLTEPYDFIEDAVRLLQIGLLNSAKATEFTHAILNPPYLKINANSKVRELLHSIGLETSNLYTGFMAATAQLLKPSGEFVAITPRSFCFCNGPYFRDFRKMFLEMMALQQVHLFESRQEAFSDDDILQETIIIQAIKKRQKSSSVIINTSFGANDDLIMSQSVPYTALVNPNDQEQFIHIIPDKISKQIVERIEIFPCTLKDLGITVSTGRVVDFRSKEYLRVNLENNTVPLIYPVNLANGYVEHPKITKKPQAIVSLEKTANLLIPNEHYVLCKRFSSKEEKRRVVAMVYDANQFNYAYVGFENHLNYFHKDGRGLSLSLARGLAIYLNSTLVDAFFRLFNGHTQVNATDLRKLKYSNLEQLLALGIEITEQFPCLRKIDELIENQLQSMSNLSENNPIVTKSRIDEALQILTQLGFPRTQLNERSALTLLALLGLKPTDSWQFATSPLMGITPIMDFMAQHYGKTYKPNTRETVRRQTVHQFLDAGLIVANPDNLSRPVNSPKTAYQIQNSALELLRTYGTEEWEKSICTYLASVETLKKQYAQEREMSRIPIVIDGDIKTLSPGGQNILIEKIINDFAFRFTPNGKLIYVGDTDEKFAHFDAAALTDLGVNIDSHGKMPDVIIHFTTNNWLVLIKAVISHGPINPKWKKEFEVLFRSAEIPLVMVTTFLSRKAMVAYLAEIAWETDVWVAEDSTHLIHFNGEYLLQAYQIEKKQIS

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Crispr_ID: NZ_CP040094_30

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040094_30

6500361-6500616

Orphan

N:A

Consensus_repeat	Method
GTTTCAATCCCTAATAGGGATTTTATTTGATTGCAATTT	PILER-CR
GTTTTAATCCCTAATAGGGATTTTATTTGATTGCAATT	CRISPRCasFinder
AATCCCTAATAGGGATTTTATTTGATTGCAATTT	CRT

3 spacers

The CRISPR arrays of NZ_CP040094_30

>merge|NZ_CP040094|30|6500361-6500616|PILER-CR,CRISPRCasFinder,CRT
GTTTTAATCCCTAATAGGGATTTTATTTGATTGCAATTTATAGTTCCTGCATCTTTTGAAGTAACAGACATGTTTCAATCCCTAATAGGGATTTTATTTGATTGCAATTTCCCGTGTTTATCGCAACAAATCATGATGATGGGTTTTAATCCCTAATAGGGATTTTATTTGATTGCAATTCCTAAAATTTGCTTTTGGTTAACCTGCGCGTAGCGTCGTTTCAATCCCTAATAGGGATTTTATTTGATTGCAATTT

>NZ_CP040094|30|13|6500361-6500616|PILER-CR
GTTTTAATCCCTAATAGGGATTTTATTTGATTGCAATTT	ATAGTTCCTGCATCTTTTGAAGTAACAGACAT
GTTTCAATCCCTAATAGGGATTTTATTTGATTGCAATTT	CCCGTGTTTATCGCAACAAATCATGATGATGG
GTTTTAATCCCTAATAGGGATTTTATTTGATTGCAATTC	CTAAAATTTGCTTTTGGTTAACCTGCGCGTAGCGTC
GTTTCAATCCCTAATAGGGATTTTATTTGATTGCAATTT

>NZ_CP040094|30|29|6500361-6500615|CRISPRCasFinder
GTTTTAATCCCTAATAGGGATTTTATTTGATTGCAATT	TATAGTTCCTGCATCTTTTGAAGTAACAGACAT
GTTTCAATCCCTAATAGGGATTTTATTTGATTGCAATT	TCCCGTGTTTATCGCAACAAATCATGATGATGG
GTTTTAATCCCTAATAGGGATTTTATTTGATTGCAATT	CCTAAAATTTGCTTTTGGTTAACCTGCGCGTAGCGTC
GTTTCAATCCCTAATAGGGATTTTATTTGATTGCAATT

>NZ_CP040094|30|11|6500366-6500616|CRT
AATCCCTAATAGGGATTTTATTTGATTGCAATTT	ATAGTTCCTGCATCTTTTGAAGTAACAGACATGTTTC
AATCCCTAATAGGGATTTTATTTGATTGCAATTT	CCCGTGTTTATCGCAACAAATCATGATGATGGGTTTT
AATCCCTAATAGGGATTTTATTTGATTGCAATTC	CTAAAATTTGCTTTTGGTTAACCTGCGCGTAGCGTCGTTTC
AATCCCTAATAGGGATTTTATTTGATTGCAATTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040094.1\|WP_174712324.1\|6500769_6501537_-\|circadian-clock-protein-KaiB	unknown	unknown	gnl\|CDD\|239276
NZ_CP040094.1\|WP_174713791.1\|6494087_6494639_+\|DUF421-domain-containing-protein	unknown	unknown	gnl\|CDD\|225205
NZ_CP040094.1\|WP_174712329.1\|6507220_6508915_-\|NAD(P)/FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224154
NZ_CP040094.1\|WP_174712322.1\|6497014_6498181_-\|ferrochelatase	unknown	unknown	gnl\|CDD\|178068
NZ_CP040094.1\|WP_174712327.1\|6504717_6505581_-\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|224016
NZ_CP040094.1\|WP_174712325.1\|6501726_6503010_-\|type-IV-pilus-twitching-motility-protein-PilT	unknown	unknown	gnl\|CDD\|225364
NZ_CP040094.1\|WP_174712318.1\|6490219_6491833_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174712317.1\|6489891_6490218_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174712326.1\|6503738_6504113_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174712330.1\|6509030_6509789_-\|DUF2993-domain-containing-protein	unknown	unknown	gnl\|CDD\|378597
NZ_CP040094.1\|WP_174712319.1\|6492914_6493922_+\|YihY/virulence-factor-BrkB-family-protein	unknown	unknown	gnl\|CDD\|224214
NZ_CP040094.1\|WP_174708235.1\|6499137_6500204_-\|ISKra4-family-transposase	unknown	unknown	unknown
NZ_CP040094.1\|WP_174712323.1\|6498275_6498899_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|379312
NZ_CP040094.1\|WP_174712332.1\|6511200_6512331_-\|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)	unknown	unknown	gnl\|CDD\|272978
NZ_CP040094.1\|WP_174712333.1\|6513332_6514376_+\|phosphate-ABC-transporter-substrate-binding-protein-PstS	unknown	unknown	gnl\|CDD\|270283
NZ_CP040094.1\|WP_174712331.1\|6510272_6510944_+\|peptidoglycan-binding-protein	unknown	unknown	gnl\|CDD\|213747
NZ_CP040094.1\|WP_174712320.1\|6494679_6495975_+\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|180954
NZ_CP040094.1\|WP_174712328.1\|6505659_6506403_-\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276809
NZ_CP040094.1\|WP_174712321.1\|6496335_6496890_+\|DUF4126-domain-containing-protein	unknown	unknown	gnl\|CDD\|379253
NZ_CP040094.1\|WP_174712316.1\|6489571_6489772_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP040094.1\|WP_174712324.1\|6500769_6501537_-\|circadian-clock-protein-KaiB	gnl\|CDD\|239276	cd02978, KaiB_like, KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensory domain with a TRX fold which is involved in the SasA-KaiC interaction. This domain shows high sequence similarity with KaiB. However, the KaiB structure does not show a classical TRX fold. The N-terminal half of KaiB shares the same beta-alpha-beta topology as TRX, but the topology of its C-terminal half diverges.	2.31369e-30
NZ_CP040094.1\|WP_174713791.1\|6494087_6494639_+\|DUF421-domain-containing-protein	gnl\|CDD\|225205	COG2323, COG2323, Predicted membrane protein [Function unknown].	1.14975e-45
NZ_CP040094.1\|WP_174712322.1\|6497014_6498181_-\|ferrochelatase	gnl\|CDD\|178068	PLN02449, PLN02449, ferrochelatase.	0
NZ_CP040094.1\|WP_174712327.1\|6504717_6505581_-\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|224016	COG1091, RfbD, dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane].	1.85457e-76
NZ_CP040094.1\|WP_174712329.1\|6507220_6508915_-\|NAD(P)/FAD-dependent-oxidoreductase	gnl\|CDD\|224154	COG1233, COG1233, Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism].	1.54314e-139
NZ_CP040094.1\|WP_174712332.1\|6511200_6512331_-\|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)	gnl\|CDD\|272978	TIGR00236, UDP-N-acetylglucosamine_2-epimerase, UDP-N-acetylglucosamine 2-epimerase. This cytosolic enzyme converts UDP-N-acetyl-D-glucosamine to UDP-N-acetyl-D-mannosamine. In E. coli, this is the first step in the pathway of enterobacterial common antigen biosynthesis.Members of this orthology group have many gene symbols, often reflecting the overall activity of the pathway and/or operon that includes it. Symbols include epsC (exopolysaccharide C) in Burkholderia solanacerum, cap8P (type 8 capsule P) in Staphylococcus aureus, and nfrC in an older designation based on the effects of deletion on phage N4 adsorption. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other. [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides].	0
NZ_CP040094.1\|WP_174712320.1\|6494679_6495975_+\|adenylosuccinate-lyase	gnl\|CDD\|180954	PRK07380, PRK07380, adenylosuccinate lyase; Provisional.	0
NZ_CP040094.1\|WP_174712325.1\|6501726_6503010_-\|type-IV-pilus-twitching-motility-protein-PilT	gnl\|CDD\|225364	COG2805, PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion].	0
NZ_CP040094.1\|WP_174712319.1\|6492914_6493922_+\|YihY/virulence-factor-BrkB-family-protein	gnl\|CDD\|224214	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair].	9.74834e-59
NZ_CP040094.1\|WP_174712323.1\|6498275_6498899_+\|class-I-SAM-dependent-methyltransferase	gnl\|CDD\|379312	pfam13649, Methyltransf_25, Methyltransferase domain. This family appears to be a methyltransferase domain.	1.61405e-27
NZ_CP040094.1\|WP_174712333.1\|6513332_6514376_+\|phosphate-ABC-transporter-substrate-binding-protein-PstS	gnl\|CDD\|270283	cd13565, PBP2_PstS, Substrate binding domain of ABC-type phosphate transporter, a member of the type 2 periplasmic-binding fold superfamily. This subfamily contians phosphate binding domain found in PstS proteins that serve as initial receptors in the ABC transport of phosphate in eubacteria and archaea. After binding the ligand, PstS interacts with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The PstS proteins belong to the PBPII superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	9.75971e-117
NZ_CP040094.1\|WP_174712331.1\|6510272_6510944_+\|peptidoglycan-binding-protein	gnl\|CDD\|213747	TIGR02869, Spore_cortex-lytic_enzyme, spore cortex-lytic enzyme. Members of this protein family are the spore cortex-lytic enzyme SleB from Bacillus subtilis and other Gram-positive, endospore-forming bacterial species. This protein is stored in an inactive form in the spore and activated during germination. [Cellular processes, Sporulation and germination].	4.23507e-12
NZ_CP040094.1\|WP_174712330.1\|6509030_6509789_-\|DUF2993-domain-containing-protein	gnl\|CDD\|378597	pfam11209, DUF2993, Protein of unknown function (DUF2993). This family of proteins with unknown function appears to be restricted to Cyanobacteria.	4.72386e-21
NZ_CP040094.1\|WP_174712328.1\|6505659_6506403_-\|tetratricopeptide-repeat-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	3.87172e-21
NZ_CP040094.1\|WP_174712321.1\|6496335_6496890_+\|DUF4126-domain-containing-protein	gnl\|CDD\|379253	pfam13548, DUF4126, Domain of unknown function (DUF4126).	1.21138e-32

>NZ_CP040094.1|WP_174708235.1|6499137_6500204_-|ISKra4-family-transposase
MTPEQKQALQKHIQAIAKILYEDTSKEKLTNLAAIEEAVRSQMQKHVMPEVGGFFIETITGTTAGYQRRLKSILGELAITSKQAIELEVAPSTQLSPYLETCCLRVSANVSYEDAASDIKYFTGIEVSHSSQQRLVHRQNFELPTPEQTIEELSVDGGNIRVRTPKGQICAWLGYKAISLHHLGILGTSFQNNQIVIDWVNDQPLASPLTCIGDGHDGIWNIIDQLAPDAQRREILDWFHLIENLHKVGGSQKRLKQAQNLLWKGQVEATIALFTDCKGKQVQNFCRYLDKHRNRIINYEYYQAEEICSIGSGSVESAVKQVDRRTKISGAQWKRENVPQVLAHRCAYLNGLLSV
>NZ_CP040094.1|WP_174712323.1|6498275_6498899_+|class-I-SAM-dependent-methyltransferase
MATILRDWSYRYQWLYDSISRLAALSVGGEARFRQLALQALTIHSDTQILDLCCGSGQTTQFLVKLSQNVTGLDASPKSLQRARLNVPEASYVEAFAEEMPFADNLFDLVHISVALHEMQPQQLRKIINEVYRVLKPGGVFTLVDFHAPRNSILWPGISLFLLLFETETAWQLLKTDLAGLLTETGFDVSKPILYAGGSLQVIQARK
>NZ_CP040094.1|WP_174712322.1|6497014_6498181_-|ferrochelatase
MGRVGVLLLNLGGPDKLEDVGPFLYNLFSDPEIIRLPFRWLQKPLAWFIASRRTRTSQENYKQIGGGSPLRRITEAQGEALKEQLGYLGQEANIYVGMRYWHPYTEEAIAQITQDNIEHLVILPLYPQFSISTSGSSFRLLDKLWREDPKLQPIEYTVIPSWYKQPGYLQAMAELIAQELEQFPNPNEVHIFFSAHGVPKSYVEEAGDPYQQEIEECTALIMQTLNRPNAHTLAYQSRVGPVEWLQPYTEDALKELGAQGVKDLVVVPISFVSEHIETLQEIDIEYREVAEESGIHNFRRVPAPNTHPVFINALADLVIDALKNPSFKLSQAAQMKKMVKMYPQERWEWGLTTSAEVWNGRIAMLGFIALIIELVTGHGFLHMIGLLQ
>NZ_CP040094.1|WP_174712321.1|6496335_6496890_+|DUF4126-domain-containing-protein
MIEILATLSASAAAGMRIGIPLLIIGLLQGSNLWSQVPILSHISPPILLGCLTFWSLFELLASKKLWGQRLLQLVQLFMSPIVGAIMGLAVANATATPNWLIACIGGSLALVLQLVQVGWFYRLRGLPLWAVFLQDTLCIALVLFAFDAPWQGGLIALIMLWFAVCSAKQWYDWYHNKGIGHRA
>NZ_CP040094.1|WP_174712320.1|6494679_6495975_+|adenylosuccinate-lyase
MIERYTLPEMANLWSEAYKLKTWLQVEIAVCEAQAELGYIPSQAVEEIKAKADFDPKRVLEIEAVVRHDVIAFLTNVNEYVGDAGRYIHLGLTSSDVLDTALALQLVASLDLLLQRLEDLIQVIREKAREHRHTVMAGRSHGIHAEPITFGFKLAGWLAEVLRHQERLRILRQTIAVGKISGAVGTYANVEPRVEAIACQKLGLKPDTASTQVISRDRHADYVQQLALVAASIERFAVEIRNLQKTDVLEVEEFFAKGQKGSSAMPHKRNPIRSERLTGMARLVRSHAGAALENVALWHERDISHSSVERVILPDACTLTHFMLSEITDLVKNLLVYPENMERNLNCYGGVVFSQKVLLALIDKGSSREEAYAIVQESAHVAWNKPGGNFQDLISKDPRVTQKLSPAELEVCFDPQQHLQHLEEVYQRLEI
>NZ_CP040094.1|WP_174713791.1|6494087_6494639_+|DUF421-domain-containing-protein
MEKWFFIDWQAIFVPSISVFELIIRGSLVYLALFSVLRFLPSRQLGTLGITDLLVVVLFAEAAQNAMASNYTSITEGAILVGTVIFWSYLLNWLGYKIPQFQRFMNQPPLLLVKNGRMIQRHLQRELITDDELMSKLRQQGVEFLADVKFAYMEADGRISIITFDSKTNSVPEPKTALKIDLH
>NZ_CP040094.1|WP_174712319.1|6492914_6493922_+|YihY/virulence-factor-BrkB-family-protein
MNLQAIGKLFQETFKEWSEDKASRLAAALAYYTIFSIAPLLIIVIAIAGAVFGEEAARGQIVGQIQGLVGIEGAKFLESAIQNANQPKTGAIASIISVVVLLVGATGLFTELQDAMNTIWEVKPKPGRGVNNIIRLRILSFAMVIGIGFLLLVSLVISTVLTTLVTYFSNLLPGVDFLWQFVNFLLSFAITTVLFGLIFKVLPDVKIAWSDVLVGASLTSVLFSIGRFLLGQYLGNGSFGSTYGAAGSLVVILAWVNYATQILFFGAEFTQVYARRYGSGITPTKHAIPLSDKTEYNGKAPTRQSSTNKKPPSNLINRLFQSFKKPKRLKNRRRN
>NZ_CP040094.1|WP_174712318.1|6490219_6491833_+|hypothetical-protein
MASCAYCFNQYDLIDGFGTHCSRRCAVRHGNKNIWSDEELNHLKSLVGSNPVAKIINDWNAIAVRKGWIERSPNSIKIKAVRLFKGASTKAKDDNLSFTTWSKRLNIAVDRFQDWELCGLKVENYSKDAGGRSHIKCVSRQSLTEFARIHPEKLWGISKNNLEKSLIDKALAKALFKSVNQPTVGRPIAIVDLKHCAVYPSAKNAASVLDLHKSTILHNAKISPHPYSKNLKHNFAQLDYPVWWISREHASVMHEIAGVVLYEMHSEYVEVDGYTKQRFLTLGVAIAVRIAIRSLNIYFHEHKAIPETNSGIVKEIATRIRKVSDSFQQRFVDRDSSQCFEIIKRTIKGSTAHIFHGRVLDKRKIDIYLEEFANDYIEFAAKFFKRRQYLPKDWKPKTSIEKAYYWDSILGVVYIKREIGRSTEESKMILIRVLMAYQFIQKKGLEFSSVERNENYLSHQTAESNASLFEEELANFIEANSQNKYLQSILFAIAHGFSDKEIAMQLALSKDRYFEYKTQLQDLTKLLSGRLVVGKPC
>NZ_CP040094.1|WP_174712317.1|6489891_6490218_+|hypothetical-protein
MNKLNWEISKLNPPLWWQLHLGEGLIVITIVHRPNAQEPGYHASVGNGLATRGNVLSTLGQAKSWGIESAGVALKEMSNELQPENPWLLWTCLVGAIALQAIWLLLFN
>NZ_CP040094.1|WP_174712316.1|6489571_6489772_+|hypothetical-protein
MGLIADVILNAIAALIDWRNGYQGKVTNGFAVNGFTPQKPGKLRYAGLIFAFAISIRQQIFALKFQ
>NZ_CP040094.1|WP_174712324.1|6500769_6501537_-|circadian-clock-protein-KaiB
MNNLTTNKLSTPQLFKGIALFTPGGDLIYCIDPSKQGRWHLHLCSALQEILDLPEPPHFLVPCYTATIDHWLDPRTQQVRTFAEAYPAVIRHQALLNAIFGTGELVWQAAPWQEGLCDRMVLTSYRSSFGQLWEDHDLIVRLDLSEPVPKYHQPVIVQKKEVITQGYVLRLFVAGHSSTTERILQNLHELLERSLGHPYTLKVIDVLSHPEQAELNQVSATPTLVKVWPHPIRRIVGELDHVEKILQMLATKEKF
>NZ_CP040094.1|WP_174712325.1|6501726_6503010_-|type-IV-pilus-twitching-motility-protein-PilT
MTESQSPSNSSPVTERNLPPMPPMPPPPPTFSTQRQMTQTLDMSMDKSTNTPVAGHRPVSPPPIPSSVPPKTSSAGPTLEKLIREAYDQGYSDLHLGVGEVPRFRSRGEIQSWDYPEVDKEAFMNWLREVMSEAEIQRFEEHLEFDGATQYDFARVRINVFGTLRGPAMVLRLIPLKILTMEQLRLPPVFRDICHHHKGLILVTGPTGSGKSTTMAAMVDYINKEMAKHIITIEDPIEFIHQSRKSLVKQREVGMHTRKFDNALKAALREDPDLILVGEMRDKETVNTALKAAQTGHLVMGTLHTNSAVKTIERILNLYSGDEQDAMRVAISESLVSVIAQGLCRTTDGKRAAFHDVLINTEAIKEWIKDGKYDEIGELMKQASFDGMITMNQSLLNLYQEGRITEETALEMSPTPNEMAQFLRGRV
>NZ_CP040094.1|WP_174712326.1|6503738_6504113_+|hypothetical-protein
MVSAQSSNLGKTYSLLMIKSFLIWTFTLAVCLLVVGFPLVVLMATVGCLLSIILQSVMPVSAVLLVAGALIMFNVMAVVFAAGVLTIKGVHPSEVKWLSWLHGEADQMQTTVYAACPLTCEIKI
>NZ_CP040094.1|WP_174712327.1|6504717_6505581_-|NAD(P)-dependent-oxidoreductase
MKKLLITGASGFLGWHLCQLAKQEWEIYGTYLSHPLEIPGMKILKANLANFQEFKRIFNDVKPEAVIHTAAHSQPNFCQTNPKESHAINVIASCNIAALCADNSIPCAFTSTDLVFDGLNAPYQETDAVCPVNLYGEQKAIAEADMLERYPMTAVCRMPLMFGAETPTAKSFIQPFIQTLTAEKELNLFIDEFRTPVSGTTAAKGLLLALEKVNGIIHLGGKERISRYDFGKILVEVLQLPTIGLKSCRQQDVKMAAPRPADVSLDSSKAFALGYQPLSLKEELEML
>NZ_CP040094.1|WP_174712328.1|6505659_6506403_-|tetratricopeptide-repeat-protein
MIVQRCFVASGLIAFFAFGCSGGANSSIENTTQVVQESNVTQLFIEAKATQKAEDFFHQGNNLLDGQRYEDAIKVYDKAIAIKVESPEAWINRGIALTSLQRYQDALASYDRAIAIKPDKYEAWYNRGIALTSLQRYKDAIASYDKAIAIQPNKYQALINRGIALTKLHRYKDAIASYDKAIVIKQDLHQAYYNKACSYALQSNLELAIENLDKAIELVPDKYKKLAKTDPDFSKVRSEKQFQELIQ
>NZ_CP040094.1|WP_174712329.1|6507220_6508915_-|NAD(P)/FAD-dependent-oxidoreductase
MQEYDVVLIGAGHNGLVCAAYLLKAGYSVLLLEKRSVPGGAATTEECLPQEAPGFKFNLCAIDHEFIHLGPVVEELELEKYGLHYLECDPVVFCPHPDGKYFLGHKSLEKTCAEIARYNERDAKKYAEFVDFWQRAIGAMIPMFNAPPKSIIDIVGNYDIKKIKDLFSVIGSPNKTLDFIRTMLTSAEDLLNEWFDEEFLKAPLARLASELGAPPSQKTLAIGAIMMAMRHNPGMARPRGGTGALVQALVNLVTSKGGVILTDQHVEKVLIDDGKAVGVRVAGGKEYRAKYGVISNIDAKRLFLQMTDKSDVDGADPDLWERLERRIVNNNETILKIDLALDEPLRFPHHAHKDEYLVGSILIADSVAHVEQAHSKCTLGEIPDADPSMYVVMPSYLDPTLAPPGKHTVWIEYFAPYQIAGAEGTGLKGTGWTDELKNKVADRVVDKLADYAPNVKNATIARRVESPAELGERLGAYKGNYYHVDMTLDQMIFFRPLPEIANYKTPIDNLFLTGAGTHPGGSISGMPGRNCARAFLQAKHPISQTLKDARDSIKSTVESVFGIN
>NZ_CP040094.1|WP_174712330.1|6509030_6509789_-|DUF2993-domain-containing-protein
MPDEHRLEEQFLSQEAERRISEKLDEAEKIEIDVQTDLLKIIQGQADGVSVVGQGLVIKENIRVQEIHLQTDSIAINPFSALFGQIELNQPVNTIARIILTETDINRTLASDFVNSQMQDFDLDVDGKIVSFEAQKIEIFLPGDGKIESRGRVLLKEKGNTRVLGYTAIACPRTHSQPAMLESFNCTEGGGISIEVVTALMQKAKELMNIPYFKWEDMVFHIKDIKVGIGSLILMVETQVKQIPSSSILPSS
>NZ_CP040094.1|WP_174712331.1|6510272_6510944_+|peptidoglycan-binding-protein
MEYLAYSHMFIAQEEASGNTKYNLPKSQLNGKEPLKSSNIVIAEKQASANSKTKFNWKKLLKSSAWLALAGVGVLLIAATQIQISSAAYVKTNGSCLRIRTGPSTNYSYIDCVSNGATLPAIERYENGFARLSTGRYVYARWVADRPNNPPVTSKPGGVGGSVILTRGSRGQLVRDVQTALGNLRVDGIYGQETVNQVRTFQTSKGLLVDGTVGPETRAALGI
>NZ_CP040094.1|WP_174712332.1|6511200_6512331_-|UDP-N-acetylglucosamine-2-epimerase-(non-hydrolyzing)
MTNQKRVCIILGTRPEAIKLAPVIQVFQKSLAFESQVILTGQHREMVEQVMQLFNIKADYDLEIMQVQQSLNDITCRSLQGLETLFKEKKPDLVVVQGDTTTAFAAALAAFYQKIPIGHVEAGLRTDDLFNPYPEEANRRLISQITQLHFAPTPWAVENLHRSGVLGEIHMTGNTVIDALLNVAATQAVCNIPGLDWDSYRVLLATVHRRENWGEPLQAIAQGFLQILDKFRDTALLLPLHRNPTVRIPLQELLGNHPRIFLTEPLDYGELVGAIGRSHLLLTDSGGLQEEAPSLGKPVLVLRDTTERPEAVVAGTAKLVGTTSENIFAAAAELLSNPDAYEAMANAINPFGDGHAAERILQIVQNYLGVSSEIST
>NZ_CP040094.1|WP_174712333.1|6513332_6514376_+|phosphate-ABC-transporter-substrate-binding-protein-PstS
MIFSTTTLNRVVATSLVTTSVALSPFFGAIAQAETLNGAGATFPAPLYERYAREVKKKYPDLKINYQAIGSGGGIRQVTAGTVDFGGSDAAMKDDEIAKVKNGVILVPTAGGAVSVVYNLPGVNDLKLSRKILPEIFSGQITKWDDAKIKADNPGVNLPSQAIKFVVRADGSGTTFIFTNHLSATSGYFKGRVGANTAPKWNLPNVLKGKGNPGVAAIVARTPGSIGYVEYAYAVKNNLKSALVQNKKGEFVAPSLESANAALSTVTFPDNYRVFVGEPAQGYPIVGLTWMMVYKQYANAAKADAIKKWINWVLKDGQQYNDDLNYTKIPSDVANRVLQTVNSSVKP

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Crispr_ID: NZ_CP040094_31

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040094_31

6743293-6743397

Orphan

N:A

Consensus_repeat	Method
TACAAGCCCCTGAATTTATTTATGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040094_31

>merge|NZ_CP040094|31|6743293-6743397|CRISPRCasFinder
TACAAGCCCCTGAATTTATTTATGGAGAAACAAAAAAGATGTATGTAGTGACGCACAGCGCATATTTACTACGTTTTTATTACAAGCCCCTAAATTTATTTATGG

>NZ_CP040094|31|30|6743293-6743397|CRISPRCasFinder
TACAAGCCCCTGAATTTATTTATGG	AGAAACAAAAAAGATGTATGTAGTGACGCACAGCGCATATTTACTACGTTTTTAT
TACAAGCCCCTAAATTTATTTATGG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040094.1\|WP_174712471.1\|6735786_6736128_+\|photosystem-II-reaction-center-protein-Psb28	unknown	unknown	gnl\|CDD\|237446
NZ_CP040094.1\|WP_174712487.1\|6752992_6753250_-\|cytotoxic-translational-repressor-of-toxin-antitoxin-stability-system	unknown	unknown	unknown
NZ_CP040094.1\|WP_174712483.1\|6746735_6748607_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174712479.1\|6743486_6744455_+\|malate-dehydrogenase	unknown	unknown	gnl\|CDD\|133424
NZ_CP040094.1\|WP_174712472.1\|6736869_6738627_+\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NZ_CP040094.1\|WP_174712485.1\|6750372_6751035_+\|Nif11-family-protein	unknown	unknown	gnl\|CDD\|369562
NZ_CP040094.1\|WP_174712476.1\|6741445_6741661_+\|photosystem-I-reaction-center-subunit-IV	unknown	unknown	gnl\|CDD\|367080
NZ_CP040094.1\|WP_174713809.1\|6736231_6736741_+\|MogA/MoaB-family-molybdenum-cofactor-biosynthesis-protein	unknown	unknown	gnl\|CDD\|238451
NZ_CP040094.1\|WP_174712480.1\|6744792_6745122_-\|translation-initiation-factor	unknown	unknown	unknown
NZ_CP040094.1\|WP_174712477.1\|6741912_6742812_+\|DNA-formamidopyrimidine-glycosylase	unknown	unknown	gnl\|CDD\|184410
NZ_CP040094.1\|WP_174712481.1\|6745218_6745701_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174712488.1\|6753356_6753554_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174712486.1\|6751293_6752880_-\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|237609
NZ_CP040094.1\|WP_174712478.1\|6742913_6743129_+\|NAD(P)H-quinone-oxidoreductase-subunit-O	unknown	unknown	gnl\|CDD\|371791
NZ_CP040094.1\|WP_174712475.1\|6740572_6741157_+\|fibrillin	unknown	unknown	gnl\|CDD\|309752
NZ_CP040094.1\|WP_174712470.1\|6735229_6735682_+\|D-tyrosyl-tRNA(Tyr)-deacylase	unknown	unknown	gnl\|CDD\|235383
NZ_CP040094.1\|WP_174712474.1\|6740093_6740330_-\|DUF3134-domain-containing-protein	unknown	unknown	gnl\|CDD\|371474
NZ_CP040094.1\|WP_174712484.1\|6748617_6749991_+\|DUF1802-family-protein	unknown	unknown	gnl\|CDD\|370138
NZ_CP040094.1\|WP_174712473.1\|6738922_6740014_-\|phospho-N-acetylmuramoyl-pentapeptide--transferase	unknown	unknown	gnl\|CDD\|234638
NZ_CP040094.1\|WP_174712482.1\|6746040_6746697_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP040094.1\|WP_174712471.1\|6735786_6736128_+\|photosystem-II-reaction-center-protein-Psb28	gnl\|CDD\|237446	PRK13612, PRK13612, photosystem II reaction center protein Psb28; Provisional.	8.70217e-72
NZ_CP040094.1\|WP_174712479.1\|6743486_6744455_+\|malate-dehydrogenase	gnl\|CDD\|133424	cd01339, LDH-like_MDH, L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	7.74516e-178
NZ_CP040094.1\|WP_174712472.1\|6736869_6738627_+\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.01046e-51
NZ_CP040094.1\|WP_174712485.1\|6750372_6751035_+\|Nif11-family-protein	gnl\|CDD\|369562	pfam07862, Nif11, Nif11 domain. This domain is found mainly in the Cyanobacteria and in Proteobacteria such as the nitrogen-fixing bacterium Azotobacter vinelandii. It is found in Nif11, a protein described in Azotobacter as linked to nitrogen fixation. It also constitutes a leader peptide in Nif11-derived peptides (N11P), which are thought to be post-translationally modified microcins derived from a putative nitrogen-fixing protein. N11P sequences have a classic leader peptide cleavage motif, usually Gly-Gly, which marks the end of family-wide similarity area and the beginning of a low-complexity region rich in Cys, Gly and Ser.	3.27244e-05
NZ_CP040094.1\|WP_174712476.1\|6741445_6741661_+\|photosystem-I-reaction-center-subunit-IV	gnl\|CDD\|367080	pfam02427, PSI_PsaE, Photosystem I reaction centre subunit IV / PsaE. PsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane. The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains.	2.11291e-39
NZ_CP040094.1\|WP_174713809.1\|6736231_6736741_+\|MogA/MoaB-family-molybdenum-cofactor-biosynthesis-protein	gnl\|CDD\|238451	cd00886, MogA_MoaB, MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.	7.68725e-67
NZ_CP040094.1\|WP_174712477.1\|6741912_6742812_+\|DNA-formamidopyrimidine-glycosylase	gnl\|CDD\|184410	PRK13945, PRK13945, formamidopyrimidine-DNA glycosylase; Provisional.	0
NZ_CP040094.1\|WP_174712486.1\|6751293_6752880_-\|glucose-6-phosphate-isomerase	gnl\|CDD\|237609	PRK14096, pgi, glucose-6-phosphate isomerase; Provisional.	0
NZ_CP040094.1\|WP_174712478.1\|6742913_6743129_+\|NAD(P)H-quinone-oxidoreductase-subunit-O	gnl\|CDD\|371791	pfam11910, NdhO, Cyanobacterial and plant NDH-1 subunit O. The proton-pumping NADH:ubiquinone oxidoreductase catalyzes the electron transfer from NADH to ubiquinone linked with proton translocation across the membrane. It is the largest, most complex and least understood of the respiratory chain enzymes and is referred to as Complex I. The subunit composition of the enzyme varies between groups of organisms. Complex I originating from mammalian mitochondria contains 45 different proteins, whereas in bacteria, the corresponding complex NDH-1 consists of 14 different polypeptides. homologs of these 14 proteins are found among subunits of the mitochondrial complex I, and therefore bacterial NDH-1 might be considered a model proton-pumping NADH dehydrogenase with a minimal set of subunits. Escherichia coli NDH-1 readily disintegrates into 3 subcomplexes: a water-soluble NADH dehydrogenase fragment (NuoE, -F, and -G),the connecting fragment (NuoB, -C, -D, and -I), and the membrane fragment (NuoA, -H, -J, -K, -L, -M, -N). In cyanobacteria and their descendants, the chloroplasts of green plants, the subunit composition of NDH-1 remains obscure. The genes for eleven subunits NdhA-NdhK, homologous to the NuoA-NuoD and NuoH-NuoN of the E. coli complex, have been found in the genome of Synechocystis sp. PCC 6803 which has a family of 6 ndhD genes and a family of 3 ndhF genes. Two reported multisubunit complexes, NDH-1L and NDH-1M, represent distinct NDH-1 complexes in the thylakoid membrane of Synechocystis 6803 -cyanobacterium. NDH-1L was shown to be essential for photoheterotrophic cell growth, whereas expression of NDH-1M was a prerequisite for CO2 uptake and played an important role in growth of cells at low CO2. Here we report the subunit composition of these two complexes. Fifteen proteins were discovered in NDH-1L including NdhL, a new component of the membrane fragment, and Ssl1690 (designated as NdhO), a novel peripheral subunit. The three nuclear-encoded subunits NdhM,NdhN and NdhO are vital for the functional integrity of the plastidial complex.	2.87248e-41
NZ_CP040094.1\|WP_174712475.1\|6740572_6741157_+\|fibrillin	gnl\|CDD\|309752	pfam04755, PAP_fibrillin, PAP_fibrillin. This family identifies a conserved region found in a number of plastid lipid-associated proteins (PAPs), and in a number of putative fibrillin proteins.	3.96071e-77
NZ_CP040094.1\|WP_174712470.1\|6735229_6735682_+\|D-tyrosyl-tRNA(Tyr)-deacylase	gnl\|CDD\|235383	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional.	2.09792e-89
NZ_CP040094.1\|WP_174712474.1\|6740093_6740330_-\|DUF3134-domain-containing-protein	gnl\|CDD\|371474	pfam11332, DUF3134, Protein of unknown function (DUF3134). This family of proteins with unknown function appears to be restricted to Cyanobacteria.	2.62528e-24
NZ_CP040094.1\|WP_174712473.1\|6738922_6740014_-\|phospho-N-acetylmuramoyl-pentapeptide--transferase	gnl\|CDD\|234638	PRK00108, mraY, phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional.	1.71363e-134
NZ_CP040094.1\|WP_174712484.1\|6748617_6749991_+\|DUF1802-family-protein	gnl\|CDD\|370138	pfam08819, DUF1802, Domain of unknown function (DUF1802). The function of this family is unknown. This region is found associated with a pfam04471 suggesting they could be part of a restriction modification system..	1.06332e-41

>NZ_CP040094.1|WP_174712478.1|6742913_6743129_+|NAD(P)H-quinone-oxidoreductase-subunit-O
MAVKKGDMVRAIREKLENSLEAKASDTRFPSYLFETKGEIVDIKGDYALIKFGKVPTPNVWLRVDQLEEFK
>NZ_CP040094.1|WP_174712477.1|6741912_6742812_+|DNA-formamidopyrimidine-glycosylase
MPELPEVETVRKGLNQLTLNQEITGGDVLLNRTIAYPFSVGEFVDGISKNAYPGGVGAAIATWHRRGKYLLAELSSPSSTSWLGVHLRMTGQLLWLHRDEPLHKHTRVRLFFGNQQELRFVDQRTFGKIWWVPPGIPVESIITGLAKLAADPFSPEFTVEYLASKLKNRRRPIKTALLDQSVVAGLGNIYADEALFKSGILPETLCIDLQLKQIERLRTAIIQVLETSIQAGGTTFSNFLSVQGVNGNYGGVAWVYNRAGEPCRVCGMPIQRIRLAGRSSHFCSECQTLRGLENGERRD
>NZ_CP040094.1|WP_174712476.1|6741445_6741661_+|photosystem-I-reaction-center-subunit-IV
MVQRGSKVRILRPESYWFQDLGTVASIDQSGIKYPVIVRFDKVNYAGINTNNFAQDELVEVEAPKAKPAKK
>NZ_CP040094.1|WP_174712475.1|6740572_6741157_+|fibrillin
MMGKAALMDAIAGTNRGLLATEAQKQAILAAIANLEDFNPTPHPVEAGNLLDGNWRLLYTTSKALLNLDRLPFCKLGQIYQCIRVETTSVYNIAEIYGLPYLEGLISIAAKFEPVSGRRVQVKFERSIIGLQRLIEYNSPGTFIQQIEEGRKFPAIDVAINSDKQQGWLDITYIDNDLRIGRGNEGSVFILSKT
>NZ_CP040094.1|WP_174712474.1|6740093_6740330_-|DUF3134-domain-containing-protein
MLNSPLREEPRNQRAHVIPLKPESSLLDWLENKGRIITRDVQEPDFQNGEEEIDSLMGVEDGIGYDLDDDDDIGIAED
>NZ_CP040094.1|WP_174712473.1|6738922_6740014_-|phospho-N-acetylmuramoyl-pentapeptide--transferase
MDAKLSPEQGLNISGIALASLLAVGLGTTAFFLDSMANRLPWQSMSLTLPLLLCALGSGVVGFWVIPLLQALKTGQIIREDGPQAHLKKAGTPTMGGIFFIPVGVIIACILSNFATDVLAVSALTLSYGLIGWLDDWQILRRKSNKGISPRTKLALQVGFAAVFCLWLMFNQPSNITNIALPWVSFTLPLGFLFWPLAGFVLVAESNATNLTDGIDGLAAGTVAIALLALGALIAPTAPGLMVFCAALSGGCLGFLAHNRNPARVFMGDTGSLALGGALAAVALLTNTLVVLFILSGIFFVETLSVMAQVSYYKATKGPDGKGKRLLKMAPLHHHLELTGWSELQVVGVFYVIAAILAAICLA
>NZ_CP040094.1|WP_174712472.1|6736869_6738627_+|diguanylate-cyclase
MQSTYWNCIIAHSITAFSYFGIPVLIGVFFAKTKATIPSKFWLAFLLSGGFVLLCGFHHFLAIFETHSAISLLHLFVLDVMGFVSLSALLCLIPTAYQIVEAIAKYQEDTRELQRSQQMQRLFLDQGPFGAYIKDEQSRVLYYNQEIQSRFSVDSQEWLGKTDSEFLPDPEEGRRVMENDRVVLKTLRPLKLIEEVKISSNNQPCYWLSFKFPFSDGATGDRRIGGISIDITESIEVQRSLTDLNRQLEEKTLKLEAKKQELIYLSDMADMLYCCESKDEVYQAVALTCSKLFPNMSGYICIIANSKNYVQMNSIWGGEKIRTSKEIFSQSECWALRRGKFNLLSSGQSGLMCSHLIQPVSGTHLCVPLFGQGEVVGILHIYTLEEISPEDQQISEIIARTLGFALNNLSIKQRLTHDNLRDGMTQLFNQSYMETILEQRLAEAERSAQPLSLIFLDIDNFKSYNSLYGHVTANIVIQGLAKLLLKSIRSFDIPCRWGGEEFVIVMPNMTLEALRKRVEQLRVDVEQMQLKDGDQILEGITASFGIAVSEPGITVKDFLNRANQAMLEAKRTGKNRVMEYVNRYE
>NZ_CP040094.1|WP_174713809.1|6736231_6736741_+|MogA/MoaB-family-molybdenum-cofactor-biosynthesis-protein
MPQPHPDSSRITVTCAVVTVSDTRTFETDKSGQLIQQLLVAANYAVGAYTIIKDEPTQIQEQIEHLGKSSNLDAVIFNGGTGIAPRDTTYDAIEKLLEKTLPGFGELFRFLSYQEIGSRAIASRAVAGVYQDKLIFSLPGSSNAVRLAMEKLIVPELTHLVSQLCKGVK
>NZ_CP040094.1|WP_174712471.1|6735786_6736128_+|photosystem-II-reaction-center-protein-Psb28
MAKIQFSKGLDEVVIPEVRLTRSRTGDSGTATFIFTNPKILDQGSTEDITGMYLSDEEGEIITREVKAKFINGKPEALEALYVMKSAQEWDRFMRFMERYAEENDLGLSKNEA
>NZ_CP040094.1|WP_174712470.1|6735229_6735682_+|D-tyrosyl-tRNA(Tyr)-deacylase
MRVLIQRVKSSQVTVNGEIVGKIGRGLNLLVGIANTDTDTEIDWMVRKSLELRLFSDEEEDERWQKSVQEIGGDLLVVSQFTLYGDCRKGRRPSFDRSAPPQSAADLYNRFVTKLRASGLLVETGQFGAMMQVSIENDGPVTLILDKEAI
>NZ_CP040094.1|WP_174712479.1|6743486_6744455_+|malate-dehydrogenase
MSSSPNSPIVCNLPRVTIVGAGRVGSTLAQRVAEKNLADVVLLDIIAGMPQGLALDLMEARGIEIHNRQIIGTNNYADTFGSQIVVITAGLPRKPGMSRDDLLKTNAKIVVEAAKNAIAHSPNAIFIVVTNPLDVMTYLAWQATGLPRDRIMGMAGVLDSARFETFIALELGVLPADVKAMVLGSHGDLMVPLSRYATVNGIPITELLDAATIERLVERTRNGGAEIVELMQTGGAFFAPASATSVMVESILLNQSRLLPVAAYLQGEYGLEDVVIGVPCRLGCGGIESVLELTLSDEEREGLHTSAQSVRKNIERSQEILG
>NZ_CP040094.1|WP_174712480.1|6744792_6745122_-|translation-initiation-factor
MVDDFLRKAKDLFFGGNSNQDEDAELRDRNVRPASEDPYGDPADPASYGNVIPASQDPYGDPADISSYGNVRPASEDPYGDPADQGEFGNVRPASEDPYGDPADEDYRR
>NZ_CP040094.1|WP_174712481.1|6745218_6745701_-|hypothetical-protein
MNTIYKERKIVSRLFAVLLSALLMVPLLSSCGGGSRNASVPPPVDDSAGRTVSDRQTEAKKGLGTGQKVALLAGAAALYYMYNQHKNAPQEGAQGKYYLSKNGRVYYRDAEHRAHWVTPPTEGIRVPESEAQKYRQFQGYNGSTTGRDLTGITSSAAPAL
>NZ_CP040094.1|WP_174712482.1|6746040_6746697_+|hypothetical-protein
MTSKNTAQTSTRLLLALWDLGGTQQEVKKGQLTKRIVSKSKKAADYQGLFEELQNQGVIAISKKGYSLTSPEGLEVLGKGLRSGEFKFEGTIVGTWVANALVKWISQIDVAVTGADVPVNGKSAIVSYDEFKSVALEVYDKLNYEYNFNNLVPIYRIRRGIGDRISRTEFNDWLLETQADDILQLQGGSVEDSAPDKIEDSVATELDGLRCYATRLKP
>NZ_CP040094.1|WP_174712483.1|6746735_6748607_+|hypothetical-protein
MTVTTSTIDDLIRNQNPFAGHIVVRPQQIWGKSFPDVPSINAHASNTVFDAVDKVRKGKRETVGITITAEKGLGKSHIISRIRHRLQTEDSSLFIYMNKYDNLNQIKSLFLQSVASSLRAFGSQKVMQWQEIAAALINEAKQWEYTPQQYISMYPGWLSKHSTKAIVHLTESVLKVKPEITNPYIVKAILWTLSPVHINYASYWLSGLELAQSQAEEMGLPNPKNEDKEAEALSTVRQILDITSYYRVPVICFDELDIYDTADNGFLAAQLIASLVKDLYNSLKQGVLLLAMYPRTWEDQIKALPQAEAVIDRLVSDQADRQPIKLSFLNSDDIVALVSQWLQDFYEEYKQIPPHPLYPFHETKLRELGKERPTVRSVLKWCAENFILTATDKPKNIHPVEPHFKAAVVNVDTAIDLLIEDEVAIAAALRVAFASLARDTIEIEEVKVERVEEILVNKADQGYLNFRIVGNNGKVKIGVVVIQQSGGKFIGAALKRLIEYEKFNLTRGCLVRSKKINPGASVPQECLKILLKERGGEWVRLQSEDIKPLLAISSVYYNWRSYELTEEQIFDFIKQKQLAINNPLIREILSDPSGQQPTNLTNDGLPVSIPQPITNADNIDLNL
>NZ_CP040094.1|WP_174712484.1|6748617_6749991_+|DUF1802-family-protein
MNQQFSIPTALCLPVPDIEALIQGRTIAALPKMFIRPGQKFVLYPADSSASIKAWAKCELCQILDETKPLDILSKLTIWTPKILEGLLQKQQYLFLAYLRVYQLPQLQEISANPNIQEKLGKFVSLLNSLTVSEANPVLNDRTFAQRKHQLEKLEPPLHPELEELQSAIASLTISQPAAKQLDDDIKAFLGWSSNKLTNSLDLDLLWIQKIAEVGNSSDGHTFEKLVRRGLLKLGFTGSGLNPDATGGAGGMDFYAEQPYPIVGECKATKTEKVTDGTPAQLLKIGMNHLGKFQYDNSIKLIVAAGELNFYALRTATENQMNVISPETLQKLVELQAHYKNSINLLEVKEYLQQAPFGLAEAKINTYIDKVRQSLKLRSHIIQLVKNYLENSGAESAGVDALHGAYFGSYPPQPLKTVEMHEILIELSSPLTGYLGRIKGSDWKSDRFYFLRDLPIN
>NZ_CP040094.1|WP_174712485.1|6750372_6751035_+|Nif11-family-protein
MYYQIWNFFLKEDKYMYWQEKIKLNKKFDKVTWQKIIDFLLLVEQTFQLKSQLAETDSIEPFLKLAKENGYSLTADELAWFLVTRRQIWDLFDFAQKTPFLKEELLIAKDPQQFVNIAADHGYSFSVEELAWLLIEIKSSPEIVSINNSVGEILTGSNYGRIDIGYWIWLAEEWGIVPPFCHREKLGNLLSGDTSNPFLLDRCFLPKSYFNQRLLVSSNS
>NZ_CP040094.1|WP_174712486.1|6751293_6752880_-|glucose-6-phosphate-isomerase
MDARALWQRYQNWLYFHEGLGLYLDISRIRFDDAFVESLQPKFDKAFADMAELEKGAIANPDENRMVGHYWLRNPDLAPTPELTQEIVQTLEQIEAFAEKVQTGAIHPPRASRFTDIISIGIGGSALGPQFVAEALAPDFPPLKIHFIDNNDPAGIDRVINHLRNSLASTLVLVISKSGGTPEPRNGMIEVKKAYAGHNLEFAQYAVAITSVDSNLDKLAKEEGWLARFPMYDWVGGRTSEMSAVGLVPAALQGIDVRAILDGAKEMDDATRVPDVKNNPAALLALSWYFAGNGKGEKDMVVLPYKDSLFLFSRYLQQLVMESLGKEKDLDGKVVHQGIAVYGNKGSTDQHAYVQQLREGVANFFATFVEVLEDRQGPSTEIDPGVTSGDYLSGFLQGTRQALYENHRDSITVTIPQVNPRTVGALIALYERAVGLYASLVNVNAYHQPGVEAGKKAAASILDLQTRVVAVLQKEKAPISLEELAKKAGASEQVEAIYKILRHIYANQRGVVLQGDLHKPGSLTVSAS
>NZ_CP040094.1|WP_174712487.1|6752992_6753250_-|cytotoxic-translational-repressor-of-toxin-antitoxin-stability-system
MSLEMRYARSFLLDLKNLEPAAYERVHDFVFIELAQKWQLSDLKELRQLDNEGIFHRFTLDNYLIGIEIRGEIVKFLRVIPMPDV
>NZ_CP040094.1|WP_174712488.1|6753356_6753554_-|hypothetical-protein
MNLLRLRMHHLIEQLADEDLQDIWNVLEALHCDFYMLKAIQQVKRSQQPWDILTHEEAIRLLMFF

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Crispr_ID: NZ_CP040094_32

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040094_32

6744812-6745016

Orphan

N:A

Consensus_repeat	Method
TCTGCGGGGTCGCCGTAGGGGTCTT	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP040094_32

>merge|NZ_CP040094|32|6744812-6745016|CRISPRCasFinder
TCTGCGGGATCGCCGTAGGGATCTTCGCTAGCTGGACGGACGTTACCAAACTCCCCTTGGTCTGCGGGGTCGCCGTAAGGGTCTTCACTAGCTGGGCGAACATTGCCGTAAGACGAGATATCTGCGGGGTCGCCGTAGGGGTCTTGACTGGCTGGAATCACGTTACCGTAAGATGCTGGGTCTGCGGGATCGCCGTAGGGGTCTT

>NZ_CP040094|32|31|6744812-6745016|CRISPRCasFinder
TCTGCGGGATCGCCGTAGGGATCTT	CGCTAGCTGGACGGACGTTACCAAACTCCCCTTGG
TCTGCGGGGTCGCCGTAAGGGTCTT	CACTAGCTGGGCGAACATTGCCGTAAGACGAGATA
TCTGCGGGGTCGCCGTAGGGGTCTT	GACTGGCTGGAATCACGTTACCGTAAGATGCTGGG
TCTGCGGGATCGCCGTAGGGGTCTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040094.1\|WP_174712471.1\|6735786_6736128_+\|photosystem-II-reaction-center-protein-Psb28	unknown	unknown	gnl\|CDD\|237446
NZ_CP040094.1\|WP_174712487.1\|6752992_6753250_-\|cytotoxic-translational-repressor-of-toxin-antitoxin-stability-system	unknown	unknown	unknown
NZ_CP040094.1\|WP_174712483.1\|6746735_6748607_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174712479.1\|6743486_6744455_+\|malate-dehydrogenase	unknown	unknown	gnl\|CDD\|133424
NZ_CP040094.1\|WP_174712472.1\|6736869_6738627_+\|diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
NZ_CP040094.1\|WP_174712485.1\|6750372_6751035_+\|Nif11-family-protein	unknown	unknown	gnl\|CDD\|369562
NZ_CP040094.1\|WP_174712474.1\|6740093_6740330_-\|DUF3134-domain-containing-protein	unknown	unknown	gnl\|CDD\|371474
NZ_CP040094.1\|WP_174713809.1\|6736231_6736741_+\|MogA/MoaB-family-molybdenum-cofactor-biosynthesis-protein	unknown	unknown	gnl\|CDD\|238451
NZ_CP040094.1\|WP_174712489.1\|6753772_6754906_+\|branched-chain-amino-acid-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226645
NZ_CP040094.1\|WP_174712477.1\|6741912_6742812_+\|DNA-formamidopyrimidine-glycosylase	unknown	unknown	gnl\|CDD\|184410
NZ_CP040094.1\|WP_174712481.1\|6745218_6745701_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174712488.1\|6753356_6753554_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174712486.1\|6751293_6752880_-\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|237609
NZ_CP040094.1\|WP_174712478.1\|6742913_6743129_+\|NAD(P)H-quinone-oxidoreductase-subunit-O	unknown	unknown	gnl\|CDD\|371791
NZ_CP040094.1\|WP_174712475.1\|6740572_6741157_+\|fibrillin	unknown	unknown	gnl\|CDD\|309752
NZ_CP040094.1\|WP_174712476.1\|6741445_6741661_+\|photosystem-I-reaction-center-subunit-IV	unknown	unknown	gnl\|CDD\|367080
NZ_CP040094.1\|WP_174712484.1\|6748617_6749991_+\|DUF1802-family-protein	unknown	unknown	gnl\|CDD\|370138
NZ_CP040094.1\|WP_174712490.1\|6754895_6755678_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223488
NZ_CP040094.1\|WP_174712473.1\|6738922_6740014_-\|phospho-N-acetylmuramoyl-pentapeptide--transferase	unknown	unknown	gnl\|CDD\|234638
NZ_CP040094.1\|WP_174712482.1\|6746040_6746697_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP040094.1\|WP_174712471.1\|6735786_6736128_+\|photosystem-II-reaction-center-protein-Psb28	gnl\|CDD\|237446	PRK13612, PRK13612, photosystem II reaction center protein Psb28; Provisional.	8.70217e-72
NZ_CP040094.1\|WP_174712479.1\|6743486_6744455_+\|malate-dehydrogenase	gnl\|CDD\|133424	cd01339, LDH-like_MDH, L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.	7.74516e-178
NZ_CP040094.1\|WP_174712472.1\|6736869_6738627_+\|diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.01046e-51
NZ_CP040094.1\|WP_174712485.1\|6750372_6751035_+\|Nif11-family-protein	gnl\|CDD\|369562	pfam07862, Nif11, Nif11 domain. This domain is found mainly in the Cyanobacteria and in Proteobacteria such as the nitrogen-fixing bacterium Azotobacter vinelandii. It is found in Nif11, a protein described in Azotobacter as linked to nitrogen fixation. It also constitutes a leader peptide in Nif11-derived peptides (N11P), which are thought to be post-translationally modified microcins derived from a putative nitrogen-fixing protein. N11P sequences have a classic leader peptide cleavage motif, usually Gly-Gly, which marks the end of family-wide similarity area and the beginning of a low-complexity region rich in Cys, Gly and Ser.	3.27244e-05
NZ_CP040094.1\|WP_174712474.1\|6740093_6740330_-\|DUF3134-domain-containing-protein	gnl\|CDD\|371474	pfam11332, DUF3134, Protein of unknown function (DUF3134). This family of proteins with unknown function appears to be restricted to Cyanobacteria.	2.62528e-24
NZ_CP040094.1\|WP_174713809.1\|6736231_6736741_+\|MogA/MoaB-family-molybdenum-cofactor-biosynthesis-protein	gnl\|CDD\|238451	cd00886, MogA_MoaB, MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.	7.68725e-67
NZ_CP040094.1\|WP_174712489.1\|6753772_6754906_+\|branched-chain-amino-acid-ABC-transporter-permease	gnl\|CDD\|226645	COG4177, LivM, ABC-type branched-chain amino acid transport system, permease component [Amino acid transport and metabolism].	1.26547e-46
NZ_CP040094.1\|WP_174712477.1\|6741912_6742812_+\|DNA-formamidopyrimidine-glycosylase	gnl\|CDD\|184410	PRK13945, PRK13945, formamidopyrimidine-DNA glycosylase; Provisional.	0
NZ_CP040094.1\|WP_174712486.1\|6751293_6752880_-\|glucose-6-phosphate-isomerase	gnl\|CDD\|237609	PRK14096, pgi, glucose-6-phosphate isomerase; Provisional.	0
NZ_CP040094.1\|WP_174712478.1\|6742913_6743129_+\|NAD(P)H-quinone-oxidoreductase-subunit-O	gnl\|CDD\|371791	pfam11910, NdhO, Cyanobacterial and plant NDH-1 subunit O. The proton-pumping NADH:ubiquinone oxidoreductase catalyzes the electron transfer from NADH to ubiquinone linked with proton translocation across the membrane. It is the largest, most complex and least understood of the respiratory chain enzymes and is referred to as Complex I. The subunit composition of the enzyme varies between groups of organisms. Complex I originating from mammalian mitochondria contains 45 different proteins, whereas in bacteria, the corresponding complex NDH-1 consists of 14 different polypeptides. homologs of these 14 proteins are found among subunits of the mitochondrial complex I, and therefore bacterial NDH-1 might be considered a model proton-pumping NADH dehydrogenase with a minimal set of subunits. Escherichia coli NDH-1 readily disintegrates into 3 subcomplexes: a water-soluble NADH dehydrogenase fragment (NuoE, -F, and -G),the connecting fragment (NuoB, -C, -D, and -I), and the membrane fragment (NuoA, -H, -J, -K, -L, -M, -N). In cyanobacteria and their descendants, the chloroplasts of green plants, the subunit composition of NDH-1 remains obscure. The genes for eleven subunits NdhA-NdhK, homologous to the NuoA-NuoD and NuoH-NuoN of the E. coli complex, have been found in the genome of Synechocystis sp. PCC 6803 which has a family of 6 ndhD genes and a family of 3 ndhF genes. Two reported multisubunit complexes, NDH-1L and NDH-1M, represent distinct NDH-1 complexes in the thylakoid membrane of Synechocystis 6803 -cyanobacterium. NDH-1L was shown to be essential for photoheterotrophic cell growth, whereas expression of NDH-1M was a prerequisite for CO2 uptake and played an important role in growth of cells at low CO2. Here we report the subunit composition of these two complexes. Fifteen proteins were discovered in NDH-1L including NdhL, a new component of the membrane fragment, and Ssl1690 (designated as NdhO), a novel peripheral subunit. The three nuclear-encoded subunits NdhM,NdhN and NdhO are vital for the functional integrity of the plastidial complex.	2.87248e-41
NZ_CP040094.1\|WP_174712475.1\|6740572_6741157_+\|fibrillin	gnl\|CDD\|309752	pfam04755, PAP_fibrillin, PAP_fibrillin. This family identifies a conserved region found in a number of plastid lipid-associated proteins (PAPs), and in a number of putative fibrillin proteins.	3.96071e-77
NZ_CP040094.1\|WP_174712484.1\|6748617_6749991_+\|DUF1802-family-protein	gnl\|CDD\|370138	pfam08819, DUF1802, Domain of unknown function (DUF1802). The function of this family is unknown. This region is found associated with a pfam04471 suggesting they could be part of a restriction modification system..	1.06332e-41
NZ_CP040094.1\|WP_174712490.1\|6754895_6755678_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223488	COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism].	1.46972e-128
NZ_CP040094.1\|WP_174712476.1\|6741445_6741661_+\|photosystem-I-reaction-center-subunit-IV	gnl\|CDD\|367080	pfam02427, PSI_PsaE, Photosystem I reaction centre subunit IV / PsaE. PsaE is a 69 amino acid polypeptide from photosystem I present on the stromal side of the thylakoid membrane. The structure is comprised of a well-defined five-stranded beta-sheet similar to SH3 domains.	2.11291e-39
NZ_CP040094.1\|WP_174712473.1\|6738922_6740014_-\|phospho-N-acetylmuramoyl-pentapeptide--transferase	gnl\|CDD\|234638	PRK00108, mraY, phospho-N-acetylmuramoyl-pentapeptide-transferase; Provisional.	1.71363e-134

>NZ_CP040094.1|WP_174712479.1|6743486_6744455_+|malate-dehydrogenase
MSSSPNSPIVCNLPRVTIVGAGRVGSTLAQRVAEKNLADVVLLDIIAGMPQGLALDLMEARGIEIHNRQIIGTNNYADTFGSQIVVITAGLPRKPGMSRDDLLKTNAKIVVEAAKNAIAHSPNAIFIVVTNPLDVMTYLAWQATGLPRDRIMGMAGVLDSARFETFIALELGVLPADVKAMVLGSHGDLMVPLSRYATVNGIPITELLDAATIERLVERTRNGGAEIVELMQTGGAFFAPASATSVMVESILLNQSRLLPVAAYLQGEYGLEDVVIGVPCRLGCGGIESVLELTLSDEEREGLHTSAQSVRKNIERSQEILG
>NZ_CP040094.1|WP_174712478.1|6742913_6743129_+|NAD(P)H-quinone-oxidoreductase-subunit-O
MAVKKGDMVRAIREKLENSLEAKASDTRFPSYLFETKGEIVDIKGDYALIKFGKVPTPNVWLRVDQLEEFK
>NZ_CP040094.1|WP_174712477.1|6741912_6742812_+|DNA-formamidopyrimidine-glycosylase
MPELPEVETVRKGLNQLTLNQEITGGDVLLNRTIAYPFSVGEFVDGISKNAYPGGVGAAIATWHRRGKYLLAELSSPSSTSWLGVHLRMTGQLLWLHRDEPLHKHTRVRLFFGNQQELRFVDQRTFGKIWWVPPGIPVESIITGLAKLAADPFSPEFTVEYLASKLKNRRRPIKTALLDQSVVAGLGNIYADEALFKSGILPETLCIDLQLKQIERLRTAIIQVLETSIQAGGTTFSNFLSVQGVNGNYGGVAWVYNRAGEPCRVCGMPIQRIRLAGRSSHFCSECQTLRGLENGERRD
>NZ_CP040094.1|WP_174712476.1|6741445_6741661_+|photosystem-I-reaction-center-subunit-IV
MVQRGSKVRILRPESYWFQDLGTVASIDQSGIKYPVIVRFDKVNYAGINTNNFAQDELVEVEAPKAKPAKK
>NZ_CP040094.1|WP_174712475.1|6740572_6741157_+|fibrillin
MMGKAALMDAIAGTNRGLLATEAQKQAILAAIANLEDFNPTPHPVEAGNLLDGNWRLLYTTSKALLNLDRLPFCKLGQIYQCIRVETTSVYNIAEIYGLPYLEGLISIAAKFEPVSGRRVQVKFERSIIGLQRLIEYNSPGTFIQQIEEGRKFPAIDVAINSDKQQGWLDITYIDNDLRIGRGNEGSVFILSKT
>NZ_CP040094.1|WP_174712474.1|6740093_6740330_-|DUF3134-domain-containing-protein
MLNSPLREEPRNQRAHVIPLKPESSLLDWLENKGRIITRDVQEPDFQNGEEEIDSLMGVEDGIGYDLDDDDDIGIAED
>NZ_CP040094.1|WP_174712473.1|6738922_6740014_-|phospho-N-acetylmuramoyl-pentapeptide--transferase
MDAKLSPEQGLNISGIALASLLAVGLGTTAFFLDSMANRLPWQSMSLTLPLLLCALGSGVVGFWVIPLLQALKTGQIIREDGPQAHLKKAGTPTMGGIFFIPVGVIIACILSNFATDVLAVSALTLSYGLIGWLDDWQILRRKSNKGISPRTKLALQVGFAAVFCLWLMFNQPSNITNIALPWVSFTLPLGFLFWPLAGFVLVAESNATNLTDGIDGLAAGTVAIALLALGALIAPTAPGLMVFCAALSGGCLGFLAHNRNPARVFMGDTGSLALGGALAAVALLTNTLVVLFILSGIFFVETLSVMAQVSYYKATKGPDGKGKRLLKMAPLHHHLELTGWSELQVVGVFYVIAAILAAICLA
>NZ_CP040094.1|WP_174712472.1|6736869_6738627_+|diguanylate-cyclase
MQSTYWNCIIAHSITAFSYFGIPVLIGVFFAKTKATIPSKFWLAFLLSGGFVLLCGFHHFLAIFETHSAISLLHLFVLDVMGFVSLSALLCLIPTAYQIVEAIAKYQEDTRELQRSQQMQRLFLDQGPFGAYIKDEQSRVLYYNQEIQSRFSVDSQEWLGKTDSEFLPDPEEGRRVMENDRVVLKTLRPLKLIEEVKISSNNQPCYWLSFKFPFSDGATGDRRIGGISIDITESIEVQRSLTDLNRQLEEKTLKLEAKKQELIYLSDMADMLYCCESKDEVYQAVALTCSKLFPNMSGYICIIANSKNYVQMNSIWGGEKIRTSKEIFSQSECWALRRGKFNLLSSGQSGLMCSHLIQPVSGTHLCVPLFGQGEVVGILHIYTLEEISPEDQQISEIIARTLGFALNNLSIKQRLTHDNLRDGMTQLFNQSYMETILEQRLAEAERSAQPLSLIFLDIDNFKSYNSLYGHVTANIVIQGLAKLLLKSIRSFDIPCRWGGEEFVIVMPNMTLEALRKRVEQLRVDVEQMQLKDGDQILEGITASFGIAVSEPGITVKDFLNRANQAMLEAKRTGKNRVMEYVNRYE
>NZ_CP040094.1|WP_174713809.1|6736231_6736741_+|MogA/MoaB-family-molybdenum-cofactor-biosynthesis-protein
MPQPHPDSSRITVTCAVVTVSDTRTFETDKSGQLIQQLLVAANYAVGAYTIIKDEPTQIQEQIEHLGKSSNLDAVIFNGGTGIAPRDTTYDAIEKLLEKTLPGFGELFRFLSYQEIGSRAIASRAVAGVYQDKLIFSLPGSSNAVRLAMEKLIVPELTHLVSQLCKGVK
>NZ_CP040094.1|WP_174712471.1|6735786_6736128_+|photosystem-II-reaction-center-protein-Psb28
MAKIQFSKGLDEVVIPEVRLTRSRTGDSGTATFIFTNPKILDQGSTEDITGMYLSDEEGEIITREVKAKFINGKPEALEALYVMKSAQEWDRFMRFMERYAEENDLGLSKNEA
>NZ_CP040094.1|WP_174712481.1|6745218_6745701_-|hypothetical-protein
MNTIYKERKIVSRLFAVLLSALLMVPLLSSCGGGSRNASVPPPVDDSAGRTVSDRQTEAKKGLGTGQKVALLAGAAALYYMYNQHKNAPQEGAQGKYYLSKNGRVYYRDAEHRAHWVTPPTEGIRVPESEAQKYRQFQGYNGSTTGRDLTGITSSAAPAL
>NZ_CP040094.1|WP_174712482.1|6746040_6746697_+|hypothetical-protein
MTSKNTAQTSTRLLLALWDLGGTQQEVKKGQLTKRIVSKSKKAADYQGLFEELQNQGVIAISKKGYSLTSPEGLEVLGKGLRSGEFKFEGTIVGTWVANALVKWISQIDVAVTGADVPVNGKSAIVSYDEFKSVALEVYDKLNYEYNFNNLVPIYRIRRGIGDRISRTEFNDWLLETQADDILQLQGGSVEDSAPDKIEDSVATELDGLRCYATRLKP
>NZ_CP040094.1|WP_174712483.1|6746735_6748607_+|hypothetical-protein
MTVTTSTIDDLIRNQNPFAGHIVVRPQQIWGKSFPDVPSINAHASNTVFDAVDKVRKGKRETVGITITAEKGLGKSHIISRIRHRLQTEDSSLFIYMNKYDNLNQIKSLFLQSVASSLRAFGSQKVMQWQEIAAALINEAKQWEYTPQQYISMYPGWLSKHSTKAIVHLTESVLKVKPEITNPYIVKAILWTLSPVHINYASYWLSGLELAQSQAEEMGLPNPKNEDKEAEALSTVRQILDITSYYRVPVICFDELDIYDTADNGFLAAQLIASLVKDLYNSLKQGVLLLAMYPRTWEDQIKALPQAEAVIDRLVSDQADRQPIKLSFLNSDDIVALVSQWLQDFYEEYKQIPPHPLYPFHETKLRELGKERPTVRSVLKWCAENFILTATDKPKNIHPVEPHFKAAVVNVDTAIDLLIEDEVAIAAALRVAFASLARDTIEIEEVKVERVEEILVNKADQGYLNFRIVGNNGKVKIGVVVIQQSGGKFIGAALKRLIEYEKFNLTRGCLVRSKKINPGASVPQECLKILLKERGGEWVRLQSEDIKPLLAISSVYYNWRSYELTEEQIFDFIKQKQLAINNPLIREILSDPSGQQPTNLTNDGLPVSIPQPITNADNIDLNL
>NZ_CP040094.1|WP_174712484.1|6748617_6749991_+|DUF1802-family-protein
MNQQFSIPTALCLPVPDIEALIQGRTIAALPKMFIRPGQKFVLYPADSSASIKAWAKCELCQILDETKPLDILSKLTIWTPKILEGLLQKQQYLFLAYLRVYQLPQLQEISANPNIQEKLGKFVSLLNSLTVSEANPVLNDRTFAQRKHQLEKLEPPLHPELEELQSAIASLTISQPAAKQLDDDIKAFLGWSSNKLTNSLDLDLLWIQKIAEVGNSSDGHTFEKLVRRGLLKLGFTGSGLNPDATGGAGGMDFYAEQPYPIVGECKATKTEKVTDGTPAQLLKIGMNHLGKFQYDNSIKLIVAAGELNFYALRTATENQMNVISPETLQKLVELQAHYKNSINLLEVKEYLQQAPFGLAEAKINTYIDKVRQSLKLRSHIIQLVKNYLENSGAESAGVDALHGAYFGSYPPQPLKTVEMHEILIELSSPLTGYLGRIKGSDWKSDRFYFLRDLPIN
>NZ_CP040094.1|WP_174712485.1|6750372_6751035_+|Nif11-family-protein
MYYQIWNFFLKEDKYMYWQEKIKLNKKFDKVTWQKIIDFLLLVEQTFQLKSQLAETDSIEPFLKLAKENGYSLTADELAWFLVTRRQIWDLFDFAQKTPFLKEELLIAKDPQQFVNIAADHGYSFSVEELAWLLIEIKSSPEIVSINNSVGEILTGSNYGRIDIGYWIWLAEEWGIVPPFCHREKLGNLLSGDTSNPFLLDRCFLPKSYFNQRLLVSSNS
>NZ_CP040094.1|WP_174712486.1|6751293_6752880_-|glucose-6-phosphate-isomerase
MDARALWQRYQNWLYFHEGLGLYLDISRIRFDDAFVESLQPKFDKAFADMAELEKGAIANPDENRMVGHYWLRNPDLAPTPELTQEIVQTLEQIEAFAEKVQTGAIHPPRASRFTDIISIGIGGSALGPQFVAEALAPDFPPLKIHFIDNNDPAGIDRVINHLRNSLASTLVLVISKSGGTPEPRNGMIEVKKAYAGHNLEFAQYAVAITSVDSNLDKLAKEEGWLARFPMYDWVGGRTSEMSAVGLVPAALQGIDVRAILDGAKEMDDATRVPDVKNNPAALLALSWYFAGNGKGEKDMVVLPYKDSLFLFSRYLQQLVMESLGKEKDLDGKVVHQGIAVYGNKGSTDQHAYVQQLREGVANFFATFVEVLEDRQGPSTEIDPGVTSGDYLSGFLQGTRQALYENHRDSITVTIPQVNPRTVGALIALYERAVGLYASLVNVNAYHQPGVEAGKKAAASILDLQTRVVAVLQKEKAPISLEELAKKAGASEQVEAIYKILRHIYANQRGVVLQGDLHKPGSLTVSAS
>NZ_CP040094.1|WP_174712487.1|6752992_6753250_-|cytotoxic-translational-repressor-of-toxin-antitoxin-stability-system
MSLEMRYARSFLLDLKNLEPAAYERVHDFVFIELAQKWQLSDLKELRQLDNEGIFHRFTLDNYLIGIEIRGEIVKFLRVIPMPDV
>NZ_CP040094.1|WP_174712488.1|6753356_6753554_-|hypothetical-protein
MNLLRLRMHHLIEQLADEDLQDIWNVLEALHCDFYMLKAIQQVKRSQQPWDILTHEEAIRLLMFF
>NZ_CP040094.1|WP_174712489.1|6753772_6754906_+|branched-chain-amino-acid-ABC-transporter-permease
MVDYLIFLAISTALFALFGLGLNLQWGFTGLINFGHIAFMTLGAYTTVLLSLKGVPLLISAVAGAVVAALLGLIIGFATLRLREDYLGIVTIGTGELIRLVVNNQELPVGDTWASGAFGVQSYPIPLSTEPNLFIRLVMIGLLTLLAAVTFFTLWQWIRTTQISRTTDLGKRTTSKQEFASRLAVGIILAVLAAAIYISGVIGLYNYNPKAGLMLVLLLVLALVYWRLEILVRSPWGRILKAIREDEEIPKALGKNVFWYKLQSLMLGGAIAGIAGAFFAWQLSAIYPDNFQPQITFDTWIMVILGGSGNNVGTILGAVIFFAYDALTREVLPRIVPLDEARLGAFRIMVIGLILMILMIWRPQGILGKKEELTLGK
>NZ_CP040094.1|WP_174712490.1|6754895_6755678_+|ABC-transporter-ATP-binding-protein
MVNNQSPPLPLLVATGLSKSFGGVKAVNEAKIEVAKGSITGLIGPNGAGKTTFFNLLSNFIRPDKGRVIFDGEPIHNLQPYQIAQQGVIRTFQVARTLSRLSVLENMLLAAQKQTGENFWQVQLQPHIVAKEEKELEERAMFLLESVGLAKKAHDYAGCLSGGQRKLLEMGRALMTNPKLILLDEPAAGVNPKLIDDICDRILTWNRQDGMTFLIIEHNMDVIMSLCDRVWVLAEGQNLADGTPAEIQTNPKVLEAYLGK

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Crispr_ID: NZ_CP040094_33

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040094_33

7037226-7037401

Orphan

N:A

Consensus_repeat	Method
TGCTCCTTCCAAGTTGGCATCACAAA	CRISPRCasFinder

2 spacers

The CRISPR arrays of NZ_CP040094_33

>merge|NZ_CP040094|33|7037226-7037401|CRISPRCasFinder
CACGCCTTCTAAGTTGGCCCCAGCAAGTTTTGCGTTTTGTAGGTTACTGCCAATCAGGTTTGCATCTTCGAGGTTGCTACCCTCGAAGTTGGCTTCAAAGAGGTTAGCATCACAAAGAATTGCTCCTTCCAAGTTGGCATCACAAAGAATTGCTCCTTCCAAGTTGGCATCACAAA

>NZ_CP040094|33|32|7037226-7037401|CRISPRCasFinder
CACGCCTTCTAAGTTGGCCCCAGCAA	GTTTTGCGTTTTGTAGGTTACTGCCAATCAGGTTTGCATCTTCGAGGTTGCTACCCTCGAAGTT
GGCTTCAAAGAGGTTAGCATCACAAA	GAATTGCTCCTTCCAAGTTGGCATCACAAAGAAT
TGCTCCTTCCAAGTTGGCATCACAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040094.1\|WP_174712683.1\|7047038_7047809_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|181609
NZ_CP040094.1\|WP_174712676.1\|7038638_7039346_-\|actin-binding-WH2-domain-containing-protein	unknown	unknown	gnl\|CDD\|275106
NZ_CP040094.1\|WP_174712672.1\|7032439_7032667_+\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	unknown	unknown	gnl\|CDD\|226603
NZ_CP040094.1\|WP_174712680.1\|7042183_7044433_-\|TIR-domain-containing-protein	unknown	unknown	gnl\|CDD\|224165
NZ_CP040094.1\|WP_174712681.1\|7045684_7046605_+\|lysophospholipase	unknown	unknown	gnl\|CDD\|378820
NZ_CP040094.1\|WP_174712673.1\|7032663_7033050_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	unknown	unknown	gnl\|CDD\|350220
NZ_CP040094.1\|WP_174712669.1\|7030739_7031147_+\|chaperonin-family-protein-RbcX	unknown	unknown	gnl\|CDD\|367041
NZ_CP040094.1\|WP_174712678.1\|7040115_7041660_-\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223717
NZ_CP040094.1\|WP_174712682.1\|7046658_7046988_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174712677.1\|7039384_7040092_-\|actin-binding-WH2-domain-containing-protein	unknown	unknown	gnl\|CDD\|378270
NZ_CP040094.1\|WP_174712668.1\|7029208_7030639_+\|form-I-ribulose-bisphosphate-carboxylase-large-subunit	unknown	unknown	gnl\|CDD\|176981
NZ_CP040094.1\|WP_174712674.1\|7033141_7034419_+\|ribulose-bisphosphate-carboxylase-small-subunit	unknown	unknown	gnl\|CDD\|215031
NZ_CP040094.1\|WP_114082919.1\|7036429_7036801_-\|DUF2358-domain-containing-protein	unknown	unknown	gnl\|CDD\|370865
NZ_CP040094.1\|WP_174712679.1\|7041718_7042036_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174712671.1\|7031755_7032397_+\|lipase	unknown	unknown	gnl\|CDD\|238873
NZ_CP040094.1\|WP_174712684.1\|7047815_7048319_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP040094.1\|WP_174712685.1\|7048503_7049898_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE	unknown	unknown	gnl\|CDD\|235392
NZ_CP040094.1\|WP_174712675.1\|7034567_7035320_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040094.1\|WP_174712670.1\|7031194_7031533_+\|ribulose-bisphosphate-carboxylase-small-subunit	unknown	unknown	gnl\|CDD\|365873
NZ_CP040094.1\|WP_174712667.1\|7027244_7028357_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|225829

Protein	Function_ID	Function_description	E-value
NZ_CP040094.1\|WP_174712683.1\|7047038_7047809_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|181609	PRK09009, PRK09009, SDR family oxidoreductase.	1.25239e-89
NZ_CP040094.1\|WP_174712676.1\|7038638_7039346_-\|actin-binding-WH2-domain-containing-protein	gnl\|CDD\|275106	TIGR04286, hypothetical_protein_HMPREF9455_00034, MSEP-CTERM protein. Members of this protein family average over 900 residues in length and appear to have multiple membrane-spanning helices in the N-terminal half. The extreme C-terminal region consists of a motif with consensus sequence MSEP, then a transmembrane alpha helix, then a short region with several basic residues. This region, hereby dubbed MSEP-CTERM, resembles other putative sorting signals associated with the archaeosortase/exosortase protein family (see TIGR04178). Genes for all members of this family are found next to a gene for exosortase K.	0.00792913
NZ_CP040094.1\|WP_174712672.1\|7032439_7032667_+\|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	gnl\|CDD\|226603	COG4118, Phd, Antitoxin of toxin-antitoxin stability system [Cell division and chromosome partitioning].	4.70076e-15
NZ_CP040094.1\|WP_174712680.1\|7042183_7044433_-\|TIR-domain-containing-protein	gnl\|CDD\|224165	COG1244, COG1244, Predicted Fe-S oxidoreductase [General function prediction only].	1.16774e-57
NZ_CP040094.1\|WP_174712681.1\|7045684_7046605_+\|lysophospholipase	gnl\|CDD\|378820	pfam12146, Hydrolase_4, Serine aminopeptidase, S33. This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The majority of the members in this family carry the exopeptidase active-site residues of Ser-122, Asp-239 and His-269 as in UniProtKB:Q7ZWC2.	9.43151e-78
NZ_CP040094.1\|WP_174712673.1\|7032663_7033050_+\|type-II-toxin-antitoxin-system-VapC-family-toxin	gnl\|CDD\|350220	cd09872, PIN_Sll0205-like, VapC-like PIN domain of Sll0205 protein and homologs. Virulence associated protein C (VapC)-like PIN (PilT N terminus) domain of the Synechocystis sp. (strain PCC 6803) Sll0205 protein and other uncharacterized homologs are included in this subfamily. They are similar to the PIN domains of the Mycobacterium tuberculosis VapC and Neisseria gonorrhoeae FitB toxins of the prokaryotic toxin/antitoxin operons, VapBC and FitAB, respectively, which are believed to be involved in growth inhibition by regulating translation. These toxins are nearly always co-expressed with an antitoxin, a cognate protein inhibitor, forming an inert protein complex. Disassociation of the protein complex activates the ribonuclease activity of the toxin by an, as yet undefined mechanism. The PIN domain belongs to a large nuclease superfamily. The structural properties of the PIN (PilT N terminus) domain indicate its active center, consisting of three highly conserved catalytic residues which coordinate metal ions, in some members, additional metal coordinating residues can be found. Some members of the superfamily lack several of these key catalytic residues. The PIN active site is geometrically similar in the active center of structure-specific 5' nucleases, PIN-domain ribonucleases of eukaryotic rRNA editing proteins, and bacterial toxins of toxin-antitoxin (TA) operons.	2.34304e-51
NZ_CP040094.1\|WP_174712669.1\|7030739_7031147_+\|chaperonin-family-protein-RbcX	gnl\|CDD\|367041	pfam02341, RcbX, RbcX protein. The RBCX protein has been identified as having a possible chaperone-like function. The rbcX gene is juxtaposed to and cotranscribed with rbcL and rbcS encoding RuBisCO in Anabaena sp. CA. RbcX has been shown to possess a chaperone-like function assisting correct folding of RuBisCO in E. coli expression studies and is needed for RuBisCO to reach its maximal activity.	9.32975e-61
NZ_CP040094.1\|WP_174712678.1\|7040115_7041660_-\|FAD-binding-oxidoreductase	gnl\|CDD\|223717	COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion].	2.97165e-07
NZ_CP040094.1\|WP_174712677.1\|7039384_7040092_-\|actin-binding-WH2-domain-containing-protein	gnl\|CDD\|378270	pfam09843, DUF2070, Predicted membrane protein (DUF2070). This is a family of Archaeal 7-TM proteins. There are 6 closely assembled TM-regions at the N-terminus followed by a long intracellular, from residues 220-590, highly conserved region, of unknown function, terminating with one more TM-region. The short 25 residue section between TMs 5 and 6 might lie on the outer surface of the membrane and be acting as a receptor (from TMHMM).	0.000181508
NZ_CP040094.1\|WP_174712668.1\|7029208_7030639_+\|form-I-ribulose-bisphosphate-carboxylase-large-subunit	gnl\|CDD\|176981	CHL00040, rbcL, ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit.	0
NZ_CP040094.1\|WP_174712674.1\|7033141_7034419_+\|ribulose-bisphosphate-carboxylase-small-subunit	gnl\|CDD\|215031	PLN00020, PLN00020, ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional.	2.59903e-162
NZ_CP040094.1\|WP_114082919.1\|7036429_7036801_-\|DUF2358-domain-containing-protein	gnl\|CDD\|370865	pfam10184, DUF2358, Uncharacterized conserved protein (DUF2358). DUF2358 is a family of conserved proteins found from plants to humans. The function is unknown.	1.48166e-49
NZ_CP040094.1\|WP_174712671.1\|7031755_7032397_+\|lipase	gnl\|CDD\|238873	cd01835, SGNH_hydrolase_like_3, SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.	1.03851e-71
NZ_CP040094.1\|WP_174712684.1\|7047815_7048319_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	4.95799e-07
NZ_CP040094.1\|WP_174712685.1\|7048503_7049898_-\|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE	gnl\|CDD\|235392	PRK05291, trmE, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE.	0
NZ_CP040094.1\|WP_174712670.1\|7031194_7031533_+\|ribulose-bisphosphate-carboxylase-small-subunit	gnl\|CDD\|365873	pfam00101, RuBisCO_small, Ribulose bisphosphate carboxylase, small chain.	3.4345e-58
NZ_CP040094.1\|WP_174712667.1\|7027244_7028357_-\|transcriptional-regulator	gnl\|CDD\|225829	COG3292, COG3292, Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms].	6.90875e-117

>NZ_CP040094.1|WP_114082919.1|7036429_7036801_-|DUF2358-domain-containing-protein
MDIIEILKEDYQRFPVNQTYSIYAPDVYFQDPLNKFRGVKRYQKMINFIQTWFLDPKMDLHNIQRLGDTIKTEWTLSWNTPLPWKPRISIPGWSELGLNSDGLIVSHIDYWNCSPLDVVKQHF
>NZ_CP040094.1|WP_174712675.1|7034567_7035320_-|hypothetical-protein
MIYSQKFQKYLAGFSLSVVLVADLVLTQKVPPAFAEIVNSSVGNAVTFSCNDSEATIKAKNGARVVSGSSAFYIGYQQVSSNNKNPITIRFNNGIKTWCRTDYETTNDDGTGYGLYWSGGNFLYGVYSSTGSQTGNDFRRFATGRWLSSYGSGGGPKVAVIARINPANGEVYYATFLSAKKADNGNTNSLVVRSLSWDGTNLTVQAKSWWTPRRTNTNSMTCSGASPYIYTAVFTGDLTKVNSASAATCS
>NZ_CP040094.1|WP_174712674.1|7033141_7034419_+|ribulose-bisphosphate-carboxylase-small-subunit
MGYYIAPRFLDKLAVHITKNFLKLPGVRVPVILGIHGRKGEGKTFQCQLVFEKMGIEVTNISGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLVNATLMNIADNPTDVQLPGSYDSTPLHRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPDRDDKVGIVKGIFEQDGLSQKEVEQLVDTFVNQSIDFFSALRSRIYDEQIRNYIHQVGFERVSLSVVNSTEGPPEFKKPDFRLSHLIESGNFLIGEQKRVENSHLVDDYNRLNRGRNSQSAPPPATPINQSSSNGATQEAKTNGNGFQKQEGSSSHLTLDTQAQIRQLLSQGYKISIEHVDQRRFRMGSWQTCVHSHIDAESDAISNLEATLAEYSGEYVRLVGIDPKAKRRVVETIIQRPDGKN
>NZ_CP040094.1|WP_174712673.1|7032663_7033050_+|type-II-toxin-antitoxin-system-VapC-family-toxin
MILLLDTHTFIWYVTDNSRLSNQVVELINDKKNEILLSIASLWETAIKQNLGKLSFNQPFEIFIRQQLNLNDFSLLDIKINHVTVFATLFLHHRDPFDLILIAQALVENILILSADKIFDAYSIERLW
>NZ_CP040094.1|WP_174712672.1|7032439_7032667_+|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin
MQQITLAKASRNLADLIEAALSGEEIIIIKDNQPVVKLIPVSPVKRPRQPGSAKGLITISDDFDAPLEEFKEYME
>NZ_CP040094.1|WP_174712671.1|7031755_7032397_+|lipase
MELQYLPEVRICFVGDSFVNGTGDQEYLGWTGRVCANANKKGYDITYYNLGIRRDTSTDIAKRWLQEVSLRLPKEYDGRIVFSFGLNDTTLEKAKTRVDLADSIKNAREILSKAQNLYPVLMVGPAAYAQEEPQRKQITIDLSKQYTLICKEFNVPYLNVFPILEKSNIWINEARANDGVHPRAGGYTEFAQIVENWDAWLNWFPLTSSSIQS
>NZ_CP040094.1|WP_174712670.1|7031194_7031533_+|ribulose-bisphosphate-carboxylase-small-subunit
MQTLPKERRYETLSYLPPLSDAQIAKQIQYILNQGYIPAIEFNETSEPTELYWTMWKLPLFGAKSTQEVLSEVQGCRSQFNSSYIRVVGFDNIKQCQVLSFLVHKPNKGSRY
>NZ_CP040094.1|WP_174712669.1|7030739_7031147_+|chaperonin-family-protein-RbcX
MNLKQIAKDTAKTLQSYLTYQALRTVLAQLGETNPPLELWLHNFSSGKIQNGESFIEQLLREKPDLALRIMTVREHIAEEITEFLPEMVRTGIQQANMEQRRQHLERITRIDTSNPSLQPEQQATSDPNLDNLSN
>NZ_CP040094.1|WP_174712668.1|7029208_7030639_+|form-I-ribulose-bisphosphate-carboxylase-large-subunit
MSYAQTKTQSKSGYQAGVKDYRLTYYTPDYTPKDTDLLAAFRMTPQPGVPPEEAGAAVAAESSTGTWTTVWTDLLTDLDRYKGRCYDIEPVPGEDNQYICYVAYPLDLFEEGSVTNVLTSIVGNVFGFKALRALRLEDIRFPVAYIKTFQGPPHGIQVERDKLNKYGRPLLGCTIKPKLGLSAKNYGRAVYECLRGGLDFTKDDENINSAPFQRWRDRFLFVAEAINKSQAETGEIKGHYLNVTAPTCEEMLKRAEYAKELKMPIIMHDYLTAGFTANTTLARWCRDNGILLHIHRAMHAVIDRQKNHGIHFRVLAKALRLSGGDHIHTGTVVGKLEGERGITMGFVDLLRENYVEQDKSRGIYFTQDWASLPGVMAVASGGIHVWHMPALVEIFGDDSVLQFGGGTLGHPWGNAPGATANRVALEAVVQARNEGRNLAREGNDIIREAAKWSPELAVACELWKEIKFEFEAMDTV
>NZ_CP040094.1|WP_174712667.1|7027244_7028357_-|transcriptional-regulator
MARGNVSKGNVTVVLFCKRTSLLITSMLLGLIAVPSMGWAQKTPDIKPSDLTPAYPASAPPPRVESLPDERGVQENSPETDYRVGNLLADVTGNLWVGSWRGLSRIDPKTGKIISRVSLPNVAIGALAQDKVGRVWVGSYGGLVRVDPRTNEITAQNLFLPSKRVLSLLLDKRGYLWTGTDSGLALISPDQGLIMTTVKNLPGVSANTLTLDAEGQLWVGTLDGLVRVNTASAAIMKRIADLPGTTVQALAISPEGLIWAGMPNNLLVIDPKTGAVLRSVTRLRGRDVTAVRFAKDGSVWVGTSNGLLRLNPNTGAVLDAEVAGLPSSRVLALLPDISNKLWIGTSEGLAWLMPKADSAKTHIAFSRAVK
>NZ_CP040094.1|WP_174712676.1|7038638_7039346_-|actin-binding-WH2-domain-containing-protein
MLDKKNRGIQQFGVLVTLLRDRQSFLEEIRQGIRLQNKISSLFVSSSIFFALYGAIIGASHSWAQALSGAIKLPVFYLITLIICFPTLFFFNVLFGSRSSVLQHFVVLLTSVSVISVLLFSLAPVTLFFLITTPDSYQFFKLLNVLIFGITGIFGVKFLYEGMQLLSQQDEVGKKTRTTILRSWLLLYAFVGMQLGWFLRPFFGAPDSKFELFRAVKGNFYLDIVTAISEILGLR
>NZ_CP040094.1|WP_174712677.1|7039384_7040092_-|actin-binding-WH2-domain-containing-protein
MIERKSSGIKYFAVLIGFLRDRPGFLEEIRQGTRLPTKIISLLVCSSLFLAAYGGIIGAYHSWMQALSSAIKLPALYLITLLICIPTLFFANIIFGSKRTFGQHLALVLTAVSVTSVLLFSFAPITLFFLITTNNYQFLILLNVFIFALTGFIGISSLYQATSLVLEQDDEGSKTRQKILQFWLFLYAFVGSQLGWTLRPFFGTPGSTFELFREREGNFYLSVIQAIGYLLGIRN
>NZ_CP040094.1|WP_174712678.1|7040115_7041660_-|FAD-binding-oxidoreductase
MSLTEEILSQLPGDVLGGLRQSDRILTSLRENTAPVPTLVKESQQPLGVVDFDVLICGGTLGILIGCALAVKGLRVALLERGILQGREQEWNISRKELDVFVELDLLTEDELETAIATKYNPARVSFDGGTEVWVEDVLNIGVDPVYLLATLKTRFLAVGGKLLENTPFTEAVVHPDGVMVNNQFKTRLLIDAMGHLSPITQQARQGKKPDALCLVVGSCAQGFAENNSGDLLLSFTPLQNQCQYFWEAFPARDGRTTYLFTYMDAHPQRLSLETLFEEYLRLLPEYQGVELSKLKFQRALFGFFPTYRQSPLKTPWNRILPAGDSSGSQSPLSFGGFGAMVRHLKRLTYGISEALETEQLSAKALAVLQPYQPSLTVTWLFQKAMSVGINQKISPDQINQLLSAVFQEMQQLGTPVLKPFLQDIVQFSALTQTLLKTGLSHPGIVAKIIPQVGLGSLLDWTLHYGNLGVYTALFSLSPMLETWIKNQPEQQYYWHRLVDAWKYGSGGDYSDET
>NZ_CP040094.1|WP_174712679.1|7041718_7042036_-|hypothetical-protein
MSIALNQLPDPPDAEKPGIKELLTQLKEAISQSTDLPEAEKVEALEQVQALAEAGKNPQESTKQKTAKTAITMLKGIFTGLPAIASLVEAGNKLLPAITKLFGLG
>NZ_CP040094.1|WP_174712680.1|7042183_7044433_-|TIR-domain-containing-protein
MFKVFISHTHSDRPLADALRNFLEETFTEHIRVYYSSAKDVKAGIQPGAEWLQWIHQNLRECNLCLVLLSQRSLLKPWLIWESGAVLGMNLTTSSSIRIVPILFGINANQIPSPLKACRLQVMNGSCEEELNKLYTIIFDDIKNNVSSSYLNEVVVKKPQASQTYLSRIEAHLSSENPKLSISELIRFLEPLPDLSRLIKCLETLPNLRDINPHLLSQLLIKLAEVGGGQYNILGVANVYRHDSEVIKCLKAGDTYRATHPFIANPEAMDQRILNRNAFQNYIKIQIEAANRGVKVTRIYIVPDHYNLDNLQDIQRKHLESLLDSQIEIKLISEQNIDLPDGISYDCVLINTYCIGTGVPPKGVMFGSKYQIHPPSQPSELYLKHDKFFNELYSQSVSLEQCLQSKITTMIPPLSNNKIKDIKNYQEQRELAQMPAFVTKTNANINGSKVQRLMIVLRTNGCSYDKGKKGCTMCDFRKHAIDIPVEAKWMMSQFKSALAKVQTAKEQIEQIDLLTLGSFLYDGEISPEFRHTVMKYISQIPEVKKVVIESRATYVNLERLEFIKQCLRKDQILELGIGVETSNEYLRQEILRKGMPWSILERAIESCKNADVHFQAYLLIGTQRLSEIEAIEDAVRSAEDVVDLCLKYSVPFKIAFEPVFITKGTPLEELYIKKEYKLINLWSVVEVLRRTHHLGTIFVGMSDEGLSDGRIPEGCPLCTQKLRDAIEEFNGSQDIKIFDSIICNQCNPG
>NZ_CP040094.1|WP_174712681.1|7045684_7046605_+|lysophospholipase
MIDHSDRIASRKDGTFQGVGGLNLYYQSWHPEGKVRAILVIVHGLGAHSDHFSNIVQHLIPKKYAVYGLDLRGHGRSQGQRGYINAWSEFREDLGAFLQLIQTHNSGCPIFLLGHSLGGAIILDYILRYPQQASVLQGAIALAPTLGKVGISPIRVLLGKLLSRVWPRFTLNTGIDISAGSRDPQVLAALAQDTLRHTLGTARLATEFFATVDWINAKAGDWQLPLLILHGGADRVALPAGSDIFYQRINCTDKLRIEYPEAYHEIQRDLNYPEVMADLEDWLERHLPPETAQLGRGSAELEFPNS
>NZ_CP040094.1|WP_174712682.1|7046658_7046988_-|hypothetical-protein
MKFFVPAAKDDIKAEQVYSAFARSVKAPITEKRIWKLQWRDREIDMECEVGKPLPSSYQTGKELVMAIFECENFYKICTLTRGGVKGEPMLVGKNFQSSLTYFSDDVNN
>NZ_CP040094.1|WP_174712683.1|7047038_7047809_-|SDR-family-NAD(P)-dependent-oxidoreductase
MSFIDEINSVNALIVGASQGIGFGFVKRLLQDEKIAKIFATSRQLELSTDLIALVDEHSERLICLEMDITDELQIVETIQKIHAKVDKLHLVVNCVGLLHEDTLQPEKSLRQINSENLLRYFQINSIGAVLLAKHLLPLFRHGERSVFASISAKLGSIGDNKLGGWYGYRASKAALNMLMRTAAIEYKRSCPKALIVTLHPGTTDTRLSRPFQRNVSAEKLFTVERTVTQLLTVIEQLQEGDSGQFFSWDGSRLPW
>NZ_CP040094.1|WP_174712684.1|7047815_7048319_-|GNAT-family-N-acetyltransferase
MYISIRQATIQDTVIVSNVLLEAALWLQGRGIPLWGDSEVSRESISEDVANGLFFIAECAGEPAGTIKFQLEDLLFWPDISQEESAFVHRLAIRRCYSGGKVSSALLTWAVERAQTLGKRYLRLDCDASRPRLRAVYEGFGFRYHSDRQVGAYFVSRYEYEILPQLT
>NZ_CP040094.1|WP_174712685.1|7048503_7049898_-|tRNA-uridine-5-carboxymethylaminomethyl(34)-synthesis-GTPase-MnmE
MSEVFATTGTIAAIATAVVPQQGSVGIVRVSGSEAMALAQTLFHAPGQQVWETHRILYGYIRHPQTQQLVDEALLLIMKAPRSYTREDVVEFHCHGGIMAVQQVLQLCLENGARLAQPGEFTLRAFLNGRLDLTQAEGIADLVGAKSPQAAQTALAGLQGKLAHPIRQLRANCLDILAEIEARIDFEEDLPPLDDKAIISEIEKIAAEITRLLATKDKGELLRTGLKVAIVGRPNVGKSSLLNAWSRSDRAIVTDLPGTTRDVVESQLVVEGIPVQVLDTAGIRETTDQVEKIGVERSRRAANAADLVLLTIDASAGWTEGDREIYEQVQHRPLILVINKIDLVEENESKNLQSQIPNLKSKIVTAVAQNQGVDALETAILDIVNAGKFQVADMDLAINQRQAAALIQAKTSLEQVQATIAQQLPLDFWTIDLRGAIQALGEISGEEVTESVLDRIFSKFCIGK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	366201-366217	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	366208-366224	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	366215-366231	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	379948-379964	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	488967-488983	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	559795-559811	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	751652-751668	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	751659-751675	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	812793-812809	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	1024651-1024667	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	1024658-1024674	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	1024665-1024681	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	1024672-1024688	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	1024679-1024695	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	1024686-1024702	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	1024693-1024709	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	1041509-1041525	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	1360822-1360838	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	1394970-1394986	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	1394977-1394993	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	1394984-1395000	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	2119539-2119555	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	2220043-2220059	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	2298081-2298097	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	2298088-2298104	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	2548924-2548940	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	2647994-2648010	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	2648001-2648017	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	2651362-2651378	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	2651369-2651385	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	2651376-2651392	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	3500132-3500148	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	3849556-3849572	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	3849563-3849579	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	3849570-3849586	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	3849577-3849593	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	4058739-4058755	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	4343387-4343403	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	4343394-4343410	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	4630494-4630510	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	4630501-4630517	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	4722297-4722313	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	5310357-5310373	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	5331020-5331036	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	5331027-5331043	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	5387568-5387584	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	5399933-5399949	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	5595757-5595773	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	5595764-5595780	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	5764269-5764285	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	6068030-6068046	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	6300810-6300826	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	6363111-6363127	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	6587145-6587161	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	6661391-6661407	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	6661398-6661414	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	6935000-6935016	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	6935007-6935023	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	7299164-7299180	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	7299171-7299187	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	7299178-7299194	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	7299185-7299201	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	7299192-7299208	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	7299199-7299215	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	7299206-7299222	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	7309047-7309063	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	7323360-7323376	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	7323367-7323383	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	7413557-7413573	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	7413564-7413580	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	7689276-7689292	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	7689283-7689299	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	7689290-7689306	0	1.0
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	7709925-7709941	0	1.0
NZ_CP040094_11	11.1\|2219976\|17\|NZ_CP040094\|CRISPRCasFinder	2219976-2219992	17	NZ_CP040094.1	4722310-4722326	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	27424-27440	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	90842-90858	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	134374-134390	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	134388-134404	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	188589-188605	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	200758-200774	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	366222-366238	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	451932-451948	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	488953-488969	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	488960-488976	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	812800-812816	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	1024700-1024716	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	1024707-1024723	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	1041516-1041532	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	1128347-1128363	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	1150866-1150882	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	1150873-1150889	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	1360815-1360831	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	1384105-1384121	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	1394991-1395007	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	2119511-2119527	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	2119518-2119534	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	2119532-2119548	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	2298095-2298111	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	2298102-2298118	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	2405978-2405994	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	2548917-2548933	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	2548931-2548947	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	2651404-2651420	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	2919328-2919344	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	3119021-3119037	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	3214586-3214602	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	3214614-3214630	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	3310791-3310807	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	3519373-3519389	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	3799641-3799657	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	3799648-3799664	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	4335401-4335417	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	4335408-4335424	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	4362942-4362958	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	4722330-4722346	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	5100812-5100828	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	5100826-5100842	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	5100833-5100849	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	5100840-5100856	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	5331013-5331029	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	5387554-5387570	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	5387561-5387577	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	5387575-5387591	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	5387582-5387598	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	5389346-5389362	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	5396689-5396705	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	5396696-5396712	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	5396703-5396719	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	5396710-5396726	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	5397978-5397994	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	6068037-6068053	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	6107515-6107531	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	6366278-6366294	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	6587138-6587154	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	6628838-6628854	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	6653845-6653861	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	6653852-6653868	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	6839584-6839600	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	6911599-6911615	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	6913917-6913933	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	6934993-6935009	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	7076088-7076104	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	7261865-7261881	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	7323374-7323390	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	7413550-7413566	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	7632472-7632488	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	7808682-7808698	1	0.941
NZ_CP040094_11	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	NZ_CP040094.1	7815851-7815867	1	0.941
NZ_CP040094_24	24.1\|5028413\|49\|NZ_CP040094\|CRISPRCasFinder	5028413-5028461	49	NZ_CP040094.1	5029754-5029802	2	0.959

1. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 366201-366217, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

2. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 366208-366224, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

3. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 366215-366231, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

4. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 379948-379964, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

5. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 488967-488983, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

6. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 559795-559811, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

7. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 751652-751668, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

8. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 751659-751675, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

9. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 812793-812809, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

10. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 1024651-1024667, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

11. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 1024658-1024674, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

12. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 1024665-1024681, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

13. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 1024672-1024688, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

14. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 1024679-1024695, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

15. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 1024686-1024702, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

16. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 1024693-1024709, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

17. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 1041509-1041525, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

18. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 1360822-1360838, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

19. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 1394970-1394986, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

20. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 1394977-1394993, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

21. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 1394984-1395000, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

22. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 2119539-2119555, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

23. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 2220043-2220059, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

24. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 2298081-2298097, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

25. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 2298088-2298104, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

26. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 2548924-2548940, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

27. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 2647994-2648010, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

28. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 2648001-2648017, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

29. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 2651362-2651378, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

30. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 2651369-2651385, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

31. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 2651376-2651392, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

32. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 3500132-3500148, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

33. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 3849556-3849572, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

34. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 3849563-3849579, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

35. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 3849570-3849586, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

36. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 3849577-3849593, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

37. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 4058739-4058755, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

38. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 4343387-4343403, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

39. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 4343394-4343410, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

40. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 4630494-4630510, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

41. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 4630501-4630517, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

42. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 4722297-4722313, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

43. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 5310357-5310373, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

44. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 5331020-5331036, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

45. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 5331027-5331043, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

46. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 5387568-5387584, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

47. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 5399933-5399949, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

48. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 5595757-5595773, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

49. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 5595764-5595780, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

50. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 5764269-5764285, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

51. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 6068030-6068046, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

52. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 6300810-6300826, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

53. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 6363111-6363127, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

54. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 6587145-6587161, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

55. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 6661391-6661407, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

56. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 6661398-6661414, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

57. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 6935000-6935016, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

58. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 6935007-6935023, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

59. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 7299164-7299180, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

60. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 7299171-7299187, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

61. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 7299178-7299194, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

62. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 7299185-7299201, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

63. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 7299192-7299208, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

64. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 7299199-7299215, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

65. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 7299206-7299222, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

66. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 7309047-7309063, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

67. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 7323360-7323376, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

68. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 7323367-7323383, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

69. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 7413557-7413573, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

70. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 7413564-7413580, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

71. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 7689276-7689292, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

72. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 7689283-7689299, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

73. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 7689290-7689306, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

74. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 7709925-7709941, mismatch: 0, identity: 1.0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

75. spacer 11.1|2219976|17|NZ_CP040094|CRISPRCasFinder matches to position: 4722310-4722326, mismatch: 1, identity: 0.941

gactgggactgggactg	CRISPR spacer
gattgggactgggactg	Protospacer
**.**************

76. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 27424-27440, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggagactggggact	Protospacer
*****.***********

77. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 90842-90858, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggggattggggact	Protospacer
********.********

78. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 134374-134390, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggggattggggact	Protospacer
********.********

79. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 134388-134404, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggggattggggact	Protospacer
********.********

80. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 188589-188605, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggggactgggtact	Protospacer
************* ***

81. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 200758-200774, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggggaatggggact	Protospacer
******** ********

82. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 366222-366238, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actagggactggggact	Protospacer
***.*************

83. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 451932-451948, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggggactagggact	Protospacer
**********.******

84. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 488953-488969, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actagggactggggact	Protospacer
***.*************

85. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 488960-488976, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggggactagggact	Protospacer
**********.******

86. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 812800-812816, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggggactagggact	Protospacer
**********.******

87. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 1024700-1024716, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actagggactggggact	Protospacer
***.*************

88. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 1024707-1024723, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggggactagggact	Protospacer
**********.******

89. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 1041516-1041532, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actagggactggggact	Protospacer
***.*************

90. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 1128347-1128363, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggggattggggact	Protospacer
********.********

91. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 1150866-1150882, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggggactggagact	Protospacer
************.****

92. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 1150873-1150889, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggagactggggact	Protospacer
*****.***********

93. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 1360815-1360831, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggggactagggact	Protospacer
**********.******

94. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 1384105-1384121, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggggcctggggact	Protospacer
******* *********

95. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 1394991-1395007, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggggactggagact	Protospacer
************.****

96. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 2119511-2119527, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggggactgggaact	Protospacer
*************.***

97. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 2119518-2119534, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actgggaactggggact	Protospacer
******.**********

98. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 2119532-2119548, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggggactgggaact	Protospacer
*************.***

99. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 2298095-2298111, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
acttgggactggggact	Protospacer
*** *************

100. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 2298102-2298118, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggggacttgggact	Protospacer
********** ******

101. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 2405978-2405994, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggggattggggact	Protospacer
********.********

102. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 2548917-2548933, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggggactagggact	Protospacer
**********.******

103. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 2548931-2548947, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actgggaactggggact	Protospacer
******.**********

104. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 2651404-2651420, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggggaatggggact	Protospacer
******** ********

105. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 2919328-2919344, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actagggactggggact	Protospacer
***.*************

106. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 3119021-3119037, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggggactgaggact	Protospacer
***********.*****

107. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 3214586-3214602, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggggattggggact	Protospacer
********.********

108. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 3214614-3214630, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggggattggggact	Protospacer
********.********

109. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 3310791-3310807, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggggattggggact	Protospacer
********.********

110. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 3519373-3519389, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggggattggggact	Protospacer
********.********

111. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 3799641-3799657, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggggactagggact	Protospacer
**********.******

112. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 3799648-3799664, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actagggactggggact	Protospacer
***.*************

113. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 4335401-4335417, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggggactagggact	Protospacer
**********.******

114. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 4335408-4335424, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
acaggggactggggact	Protospacer
** **************

115. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 4362942-4362958, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggggattggggact	Protospacer
********.********

116. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 4722330-4722346, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggggattggggact	Protospacer
********.********

117. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 5100812-5100828, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggggagtggggact	Protospacer
******** ********

118. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 5100826-5100842, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggggactcgggact	Protospacer
********** ******

119. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 5100833-5100849, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actcgggactggggact	Protospacer
*** *************

120. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 5100840-5100856, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggggactcgggact	Protospacer
********** ******

121. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 5331013-5331029, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actagggactggggact	Protospacer
***.*************

122. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 5387554-5387570, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggggactagggact	Protospacer
**********.******

123. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 5387561-5387577, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actagggactggggact	Protospacer
***.*************

124. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 5387575-5387591, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggggactagggact	Protospacer
**********.******

125. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 5387582-5387598, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actagggactggggact	Protospacer
***.*************

126. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 5389346-5389362, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggggactgggggct	Protospacer
**************.**

127. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 5396689-5396705, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actagggactggggact	Protospacer
***.*************

128. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 5396696-5396712, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggggactagggact	Protospacer
**********.******

129. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 5396703-5396719, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actagggactggggact	Protospacer
***.*************

130. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 5396710-5396726, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggggactagggact	Protospacer
**********.******

131. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 5397978-5397994, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actagggactggggact	Protospacer
***.*************

132. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 6068037-6068053, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggggactgggaact	Protospacer
*************.***

133. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 6107515-6107531, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggggactagggact	Protospacer
**********.******

134. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 6366278-6366294, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggggactgggtact	Protospacer
************* ***

135. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 6587138-6587154, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggggactagggact	Protospacer
**********.******

136. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 6628838-6628854, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggagactggggact	Protospacer
*****.***********

137. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 6653845-6653861, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggggactgggaact	Protospacer
*************.***

138. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 6653852-6653868, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actgggaactggggact	Protospacer
******.**********

139. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 6839584-6839600, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actagggactggggact	Protospacer
***.*************

140. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 6911599-6911615, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actgggggctggggact	Protospacer
*******.*********

141. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 6913917-6913933, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggggattggggact	Protospacer
********.********

142. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 6934993-6935009, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggggactgggaact	Protospacer
*************.***

143. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 7076088-7076104, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggggaatggggact	Protospacer
******** ********

144. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 7261865-7261881, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggggactgggaact	Protospacer
*************.***

145. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 7323374-7323390, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggggactgggaact	Protospacer
*************.***

146. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 7413550-7413566, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actagggactggggact	Protospacer
***.*************

147. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 7632472-7632488, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggggactggagact	Protospacer
************.****

148. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 7808682-7808698, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggggagtggggact	Protospacer
******** ********

149. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to position: 7815851-7815867, mismatch: 1, identity: 0.941

actggggactggggact	CRISPR spacer
actggggattggggact	Protospacer
********.********

150. spacer 24.1|5028413|49|NZ_CP040094|CRISPRCasFinder matches to position: 5029754-5029802, mismatch: 2, identity: 0.959

gattgatggtggagatggcaatgacacattgataggtggtgatggcgat	CRISPR spacer
gattgatggtggagatggcaatgacacattgataggtggtgcaggcgat	Protospacer
*****************************************  ******

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP040094_6	6.1\|1738099\|27\|NZ_CP040094\|CRISPRCasFinder	1738099-1738125	27	GU070616	Salmonella phage PVP-SE1, complete genome	92274-92300	6	0.778
NZ_CP040094_6	6.1\|1738099\|27\|NZ_CP040094\|CRISPRCasFinder	1738099-1738125	27	MG969411	UNVERIFIED: Salmonella phage GE_vB_MG, complete genome	138229-138255	6	0.778
NZ_CP040094_6	6.1\|1738099\|27\|NZ_CP040094\|CRISPRCasFinder	1738099-1738125	27	JX181824	Salmonella phage SSE-121, complete genome	122565-122591	6	0.778
NZ_CP040094_13	13.9\|2676591\|31\|NZ_CP040094\|CRISPRCasFinder,PILER-CR	2676591-2676621	31	HQ683709	Planktothrix phage PaV-LD, complete genome	48629-48659	6	0.806
NZ_CP040094_9	9.11\|2097011\|31\|NZ_CP040094\|PILER-CR,CRISPRCasFinder,CRT	2097011-2097041	31	NC_017495	Lactococcus lactis subsp. cremoris A76 plasmid pQA518, complete sequence	4487-4517	7	0.774
NZ_CP040094_13	13.5\|2676591\|32\|NZ_CP040094\|CRT	2676591-2676622	32	HQ683709	Planktothrix phage PaV-LD, complete genome	48629-48660	7	0.781
NZ_CP040094_30	30.1\|6500400\|32\|NZ_CP040094\|PILER-CR	6500400-6500431	32	NZ_CP025426	Enterococcus faecium strain SC4 plasmid p1, complete sequence	60649-60680	8	0.75
NZ_CP040094_30	30.1\|6500400\|32\|NZ_CP040094\|PILER-CR	6500400-6500431	32	LT603679	Enterococcus faecium isolate Ef_DMG1500501 genome assembly, plasmid: 2	35138-35169	8	0.75
NZ_CP040094_30	30.1\|6500400\|32\|NZ_CP040094\|PILER-CR	6500400-6500431	32	NZ_CP040369	Enterococcus faecium strain VB3240 plasmid unnamed1, complete sequence	175050-175081	8	0.75
NZ_CP040094_30	30.1\|6500400\|32\|NZ_CP040094\|PILER-CR	6500400-6500431	32	NZ_CP020485	Enterococcus faecium strain CFSAN059070 plasmid unnamed1, complete sequence	177542-177573	8	0.75
NZ_CP040094_30	30.1\|6500400\|32\|NZ_CP040094\|PILER-CR	6500400-6500431	32	NZ_CP027401	Enterococcus faecium strain FDAARGOS_323 plasmid unnamed, complete sequence	117187-117218	8	0.75
NZ_CP040094_30	30.1\|6500400\|32\|NZ_CP040094\|PILER-CR	6500400-6500431	32	NZ_CP013995	Enterococcus faecium strain 6E6 plasmid unnamed1, complete sequence	206788-206819	8	0.75
NZ_CP040094_30	30.1\|6500400\|32\|NZ_CP040094\|PILER-CR	6500400-6500431	32	NZ_CP027518	Enterococcus faecium strain AUSMDU00004024 plasmid unnamed1, complete sequence	81447-81478	8	0.75
NZ_CP040094_30	30.1\|6500400\|32\|NZ_CP040094\|PILER-CR	6500400-6500431	32	NZ_CP027498	Enterococcus faecium strain AUSMDU00004167 plasmid unnamed1, complete sequence	33690-33721	8	0.75
NZ_CP040094_30	30.1\|6500400\|32\|NZ_CP040094\|PILER-CR	6500400-6500431	32	NZ_CP027507	Enterococcus faecium strain AUSMDU00004055 plasmid unnamed1, complete sequence	132738-132769	8	0.75
NZ_CP040094_30	30.1\|6500400\|32\|NZ_CP040094\|PILER-CR	6500400-6500431	32	NZ_LR135298	Enterococcus faecium isolate E7429 plasmid 2	211961-211992	8	0.75
NZ_CP040094_30	30.1\|6500400\|32\|NZ_CP040094\|PILER-CR	6500400-6500431	32	NZ_LR135340	Enterococcus faecium isolate E7356 plasmid 2	32003-32034	8	0.75
NZ_CP040094_30	30.1\|6500400\|32\|NZ_CP040094\|PILER-CR	6500400-6500431	32	NZ_CP046076	Enterococcus faecium strain VRE plasmid p5_03A17012, complete sequence	101477-101508	8	0.75
NZ_CP040094_30	30.1\|6500400\|32\|NZ_CP040094\|PILER-CR	6500400-6500431	32	NZ_CP027513	Enterococcus faecium strain AUSMDU00004028 plasmid unnamed1, complete sequence	164430-164461	8	0.75
NZ_CP040094_30	30.1\|6500400\|32\|NZ_CP040094\|PILER-CR	6500400-6500431	32	NZ_LR135279	Enterococcus faecium isolate E6975 plasmid 2	146328-146359	8	0.75
NZ_CP040094_30	30.1\|6500400\|32\|NZ_CP040094\|PILER-CR	6500400-6500431	32	NZ_LR135255	Enterococcus faecium isolate E7098 plasmid 2	197175-197206	8	0.75
NZ_CP040094_30	30.1\|6500400\|32\|NZ_CP040094\|PILER-CR	6500400-6500431	32	NZ_LR135198	Enterococcus faecium isolate E6055 plasmid 2	202864-202895	8	0.75
NZ_CP040094_30	30.1\|6500400\|32\|NZ_CP040094\|PILER-CR	6500400-6500431	32	NZ_CP019209	Enterococcus faecium strain 2014-VREF-41 plasmid p41-1, complete sequence	103309-103340	8	0.75
NZ_CP040094_30	30.1\|6500400\|32\|NZ_CP040094\|PILER-CR	6500400-6500431	32	NZ_CP019989	Enterococcus faecium isolate 2014-VREF-63 plasmid p63-1, complete sequence	217085-217116	8	0.75
NZ_CP040094_30	30.1\|6500400\|32\|NZ_CP040094\|PILER-CR	6500400-6500431	32	NZ_LR135429	Enterococcus faecium isolate E8927 plasmid 2	173715-173746	8	0.75
NZ_CP040094_30	30.1\|6500400\|32\|NZ_CP040094\|PILER-CR	6500400-6500431	32	NZ_LR135483	Enterococcus faecium isolate E4456 plasmid 2	200092-200123	8	0.75
NZ_CP040094_30	30.1\|6500400\|32\|NZ_CP040094\|PILER-CR	6500400-6500431	32	NZ_LR135476	Enterococcus faecium isolate E8423 plasmid 2	83295-83326	8	0.75
NZ_CP040094_30	30.1\|6500400\|32\|NZ_CP040094\|PILER-CR	6500400-6500431	32	NZ_LR135175	Enterococcus faecium isolate E4402 plasmid 2	141727-141758	8	0.75
NZ_CP040094_30	30.1\|6500400\|32\|NZ_CP040094\|PILER-CR	6500400-6500431	32	NZ_LR135489	Enterococcus faecium isolate E8414 plasmid 2	206814-206845	8	0.75
NZ_CP040094_30	30.1\|6500400\|32\|NZ_CP040094\|PILER-CR	6500400-6500431	32	NZ_LR135365	Enterococcus faecium isolate E8195 plasmid 2	198947-198978	8	0.75
NZ_CP040094_30	30.1\|6500400\|32\|NZ_CP040094\|PILER-CR	6500400-6500431	32	NZ_LR135415	Enterococcus faecium isolate E8328 plasmid 2	216950-216981	8	0.75
NZ_CP040094_30	30.1\|6500400\|32\|NZ_CP040094\|PILER-CR	6500400-6500431	32	NZ_LR135395	Enterococcus faecium isolate E8290 plasmid 2	216950-216981	8	0.75
NZ_CP040094_30	30.1\|6500400\|32\|NZ_CP040094\|PILER-CR	6500400-6500431	32	NZ_LR135345	Enterococcus faecium isolate E8202 plasmid 2	165972-166003	8	0.75
NZ_CP040094_30	30.1\|6500400\|32\|NZ_CP040094\|PILER-CR	6500400-6500431	32	NZ_LR135409	Enterococcus faecium isolate E8284 plasmid 2	216950-216981	8	0.75
NZ_CP040094_30	30.1\|6500400\|32\|NZ_CP040094\|PILER-CR	6500400-6500431	32	NZ_LR135352	Enterococcus faecium isolate E8014 plasmid 2	81449-81480	8	0.75
NZ_CP040094_30	30.1\|6500400\|32\|NZ_CP040094\|PILER-CR	6500400-6500431	32	NZ_LR135385	Enterococcus faecium isolate E7933 plasmid 2	215403-215434	8	0.75
NZ_CP040094_30	30.1\|6500400\|32\|NZ_CP040094\|PILER-CR	6500400-6500431	32	NZ_LR135373	Enterococcus faecium isolate E8172 plasmid 2	136444-136475	8	0.75
NZ_CP040094_30	30.1\|6500400\|32\|NZ_CP040094\|PILER-CR	6500400-6500431	32	NZ_CP045013	Enterococcus faecium strain LAC7.2 plasmid pI, complete sequence	170201-170232	8	0.75
NZ_CP040094_30	30.1\|6500400\|32\|NZ_CP040094\|PILER-CR	6500400-6500431	32	NZ_AP022342	Enterococcus faecium strain KUHS13 plasmid pKO1, complete sequence	189465-189496	8	0.75
NZ_CP040094_30	30.1\|6500400\|32\|NZ_CP040094\|PILER-CR	6500400-6500431	32	NZ_CP044275	Enterococcus faecium strain V2937 plasmid pHVH-V2937-1, complete sequence	178154-178185	8	0.75
NZ_CP040094_30	30.1\|6500400\|32\|NZ_CP040094\|PILER-CR	6500400-6500431	32	NZ_CP019993	Enterococcus faecium isolate 2014-VREF-268 plasmid p268-1, complete sequence	225160-225191	8	0.75
NZ_CP040094_30	30.1\|6500400\|32\|NZ_CP040094\|PILER-CR	6500400-6500431	32	NZ_CP035655	Enterococcus faecium strain UAMSEF_08 plasmid unnamed1, complete sequence	146905-146936	8	0.75
NZ_CP040094_30	30.1\|6500400\|32\|NZ_CP040094\|PILER-CR	6500400-6500431	32	NZ_CP035661	Enterococcus faecium strain UAMSEF_09 plasmid unnamed1, complete sequence	140569-140600	8	0.75
NZ_CP040094_30	30.1\|6500400\|32\|NZ_CP040094\|PILER-CR	6500400-6500431	32	NZ_CP035667	Enterococcus faecium strain UAMSEF_20 plasmid unnamed1, complete sequence	140454-140485	8	0.75
NZ_CP040094_30	30.1\|6500400\|32\|NZ_CP040094\|PILER-CR	6500400-6500431	32	NC_017963	Enterococcus faecium DO plasmid 3, complete sequence	61965-61996	8	0.75
NZ_CP040094_30	30.1\|6500400\|32\|NZ_CP040094\|PILER-CR	6500400-6500431	32	NZ_LR134096	Enterococcus faecium isolate E1334 plasmid 2	117708-117739	8	0.75
NZ_CP040094_30	30.1\|6500400\|32\|NZ_CP040094\|PILER-CR	6500400-6500431	32	NZ_CP035649	Enterococcus faecium strain UAMSEF_01 plasmid unnamed1, complete sequence	146938-146969	8	0.75
NZ_CP040094_30	30.1\|6500400\|32\|NZ_CP040094\|PILER-CR	6500400-6500431	32	NZ_CP040850	Enterococcus faecium strain F17E0263 plasmid p_unnamned1, complete sequence	74929-74960	8	0.75
NZ_CP040094_30	30.1\|6500400\|32\|NZ_CP040094\|PILER-CR	6500400-6500431	32	NZ_CP018066	Enterococcus faecium strain E1 plasmid pE1_230, complete sequence	202298-202329	8	0.75
NZ_CP040094_30	30.1\|6500400\|32\|NZ_CP040094\|PILER-CR	6500400-6500431	32	NZ_CP016164	Enterococcus faecium strain ISMMS_VRE_11 plasmid ISMMS_VRE11_p1, complete sequence	155397-155428	8	0.75
NZ_CP040094_30	30.1\|6500400\|32\|NZ_CP040094\|PILER-CR	6500400-6500431	32	NZ_LT598664	Enterococcus faecium isolate Ef_aus00233 plasmid 2	188630-188661	8	0.75
NZ_CP040094_9	9.16\|2097362\|34\|NZ_CP040094\|PILER-CR,CRISPRCasFinder,CRT	2097362-2097395	34	NC_017399	Borreliella burgdorferi N40 plasmid N40_cp9, complete sequence	185-218	9	0.735
NZ_CP040094_9	9.16\|2097362\|34\|NZ_CP040094\|PILER-CR,CRISPRCasFinder,CRT	2097362-2097395	34	NZ_CP031399	Borreliella burgdorferi strain MM1 plasmid plsm_cp9, complete sequence	24-57	9	0.735
NZ_CP040094_9	9.16\|2097362\|34\|NZ_CP040094\|PILER-CR,CRISPRCasFinder,CRT	2097362-2097395	34	NZ_CP017210	Borreliella burgdorferi strain B331 plasmid B331_cp9, complete sequence	185-218	9	0.735
NZ_CP040094_9	9.16\|2097362\|34\|NZ_CP040094\|PILER-CR,CRISPRCasFinder,CRT	2097362-2097395	34	NZ_AF292711	Borreliella burgdorferi N40 plasmid cp9, complete sequence	4519-4552	9	0.735
NZ_CP040094_12	12.1\|2397940\|32\|NZ_CP040094\|CRISPRCasFinder	2397940-2397971	32	MF351863	Synechococcus phage Bellamy, complete genome	82641-82672	9	0.719
NZ_CP040094_12	12.1\|2397940\|32\|NZ_CP040094\|CRISPRCasFinder	2397940-2397971	32	MH319745	Marine virus AG-345-E15 Ga0172270_15 genomic sequence	6604-6635	9	0.719
NZ_CP040094_15	15.16\|3154671\|34\|NZ_CP040094\|CRISPRCasFinder,CRT	3154671-3154704	34	MN831413	Enterococcus faecium strain M17/0314 plasmid pM17/0314, complete sequence	77078-77111	9	0.735
NZ_CP040094_15	15.16\|3154671\|34\|NZ_CP040094\|CRISPRCasFinder,CRT	3154671-3154704	34	NZ_CP039730	Enterococcus faecium strain ZY2 plasmid pZY2	68460-68493	9	0.735
NZ_CP040094_15	15.16\|3154671\|34\|NZ_CP040094\|CRISPRCasFinder,CRT	3154671-3154704	34	NZ_MG640601	Enterococcus faecium strain SRR6 plasmid pEMSRR6, complete sequence	74228-74261	9	0.735
NZ_CP040094_15	15.16\|3154671\|34\|NZ_CP040094\|CRISPRCasFinder,CRT	3154671-3154704	34	NZ_LT598665	Enterococcus faecium isolate Ef_aus00233 plasmid 3	57404-57437	9	0.735
NZ_CP040094_15	15.35\|3154673\|34\|NZ_CP040094\|PILER-CR	3154673-3154706	34	MN831413	Enterococcus faecium strain M17/0314 plasmid pM17/0314, complete sequence	77078-77111	9	0.735
NZ_CP040094_15	15.35\|3154673\|34\|NZ_CP040094\|PILER-CR	3154673-3154706	34	NZ_CP039730	Enterococcus faecium strain ZY2 plasmid pZY2	68460-68493	9	0.735
NZ_CP040094_15	15.35\|3154673\|34\|NZ_CP040094\|PILER-CR	3154673-3154706	34	NZ_MG640601	Enterococcus faecium strain SRR6 plasmid pEMSRR6, complete sequence	74228-74261	9	0.735
NZ_CP040094_15	15.35\|3154673\|34\|NZ_CP040094\|PILER-CR	3154673-3154706	34	NZ_LT598665	Enterococcus faecium isolate Ef_aus00233 plasmid 3	57404-57437	9	0.735
NZ_CP040094_27	27.1\|5660115\|33\|NZ_CP040094\|CRISPRCasFinder,CRT	5660115-5660147	33	NC_009621	Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence	460442-460474	9	0.727
NZ_CP040094_27	27.29\|5662166\|34\|NZ_CP040094\|CRISPRCasFinder,CRT,PILER-CR	5662166-5662199	34	CP040041	Acinetobacter baumannii strain VB958 plasmid unnamed1, complete sequence	302814-302847	9	0.735
NZ_CP040094_30	30.1\|6500400\|32\|NZ_CP040094\|PILER-CR	6500400-6500431	32	NZ_CP030828	Neorhizobium sp. NCHU2750 plasmid pNCHU2750a, complete sequence	328910-328941	9	0.719
NZ_CP040094_4	4.2\|1113235\|32\|NZ_CP040094\|PILER-CR,CRISPRCasFinder,CRT	1113235-1113266	32	NZ_CP043762	Paenibacillus sp. 37 plasmid pART37, complete sequence	196639-196670	10	0.688
NZ_CP040094_9	9.16\|2097362\|34\|NZ_CP040094\|PILER-CR,CRISPRCasFinder,CRT	2097362-2097395	34	KJ019089	Synechococcus phage ACG-2014j isolate Syn7803US23, complete genome	36175-36208	10	0.706
NZ_CP040094_10	10.4\|2110787\|33\|NZ_CP040094\|PILER-CR,CRISPRCasFinder,CRT	2110787-2110819	33	AP014395	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S45-C86, * SEQUENCING IN PROGRESS *	13281-13313	10	0.697
NZ_CP040094_27	27.3\|5660256\|37\|NZ_CP040094\|CRISPRCasFinder,CRT,PILER-CR	5660256-5660292	37	NZ_AP017566	Pseudanabaena sp. ABRG5-3 plasmid ABRG53f, complete sequence	95955-95991	10	0.73
NZ_CP040094_15	15.18\|3154814\|34\|NZ_CP040094\|CRISPRCasFinder,CRT	3154814-3154847	34	NZ_CP020900	Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5d, complete sequence	923231-923264	11	0.676
NZ_CP040094_15	15.18\|3154814\|34\|NZ_CP040094\|CRISPRCasFinder,CRT	3154814-3154847	34	NZ_CP013556	Rhizobium phaseoli strain N931 plasmid pRphaN931d, complete sequence	676589-676622	11	0.676
NZ_CP040094_15	15.18\|3154814\|34\|NZ_CP040094\|CRISPRCasFinder,CRT	3154814-3154847	34	NZ_CP013589	Rhizobium phaseoli strain N161 plasmid pRphaN161d, complete sequence	665336-665369	11	0.676
NZ_CP040094_15	15.18\|3154814\|34\|NZ_CP040094\|CRISPRCasFinder,CRT	3154814-3154847	34	NZ_CP013579	Rhizobium phaseoli strain N671 plasmid pRphaN671e, complete sequence	658794-658827	11	0.676
NZ_CP040094_15	15.18\|3154814\|34\|NZ_CP040094\|CRISPRCasFinder,CRT	3154814-3154847	34	NZ_CP013536	Rhizobium phaseoli strain R650 plasmid pRphaR650d, complete sequence	239039-239072	11	0.676
NZ_CP040094_15	15.18\|3154814\|34\|NZ_CP040094\|CRISPRCasFinder,CRT	3154814-3154847	34	NZ_CP013541	Rhizobium phaseoli strain R630 plasmid pRphaR630d, complete sequence	679381-679414	11	0.676
NZ_CP040094_15	15.18\|3154814\|34\|NZ_CP040094\|CRISPRCasFinder,CRT	3154814-3154847	34	NZ_CP013546	Rhizobium phaseoli strain R620 plasmid pRphaR620d, complete sequence	673216-673249	11	0.676
NZ_CP040094_15	15.18\|3154814\|34\|NZ_CP040094\|CRISPRCasFinder,CRT	3154814-3154847	34	NZ_CP013567	Rhizobium phaseoli strain N831 plasmid pRphaN831d, complete sequence	676589-676622	11	0.676
NZ_CP040094_15	15.18\|3154814\|34\|NZ_CP040094\|CRISPRCasFinder,CRT	3154814-3154847	34	NZ_CP013573	Rhizobium phaseoli strain N771 plasmid pRphaN771e, complete sequence	658794-658827	11	0.676
NZ_CP040094_15	15.18\|3154814\|34\|NZ_CP040094\|CRISPRCasFinder,CRT	3154814-3154847	34	NC_010997	Rhizobium etli CIAT 652 plasmid pC, complete sequence	655059-655092	11	0.676
NZ_CP040094_15	15.37\|3154816\|34\|NZ_CP040094\|PILER-CR	3154816-3154849	34	NZ_CP020900	Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5d, complete sequence	923231-923264	11	0.676
NZ_CP040094_15	15.37\|3154816\|34\|NZ_CP040094\|PILER-CR	3154816-3154849	34	NZ_CP013556	Rhizobium phaseoli strain N931 plasmid pRphaN931d, complete sequence	676589-676622	11	0.676
NZ_CP040094_15	15.37\|3154816\|34\|NZ_CP040094\|PILER-CR	3154816-3154849	34	NZ_CP013589	Rhizobium phaseoli strain N161 plasmid pRphaN161d, complete sequence	665336-665369	11	0.676
NZ_CP040094_15	15.37\|3154816\|34\|NZ_CP040094\|PILER-CR	3154816-3154849	34	NZ_CP013579	Rhizobium phaseoli strain N671 plasmid pRphaN671e, complete sequence	658794-658827	11	0.676
NZ_CP040094_15	15.37\|3154816\|34\|NZ_CP040094\|PILER-CR	3154816-3154849	34	NZ_CP013536	Rhizobium phaseoli strain R650 plasmid pRphaR650d, complete sequence	239039-239072	11	0.676
NZ_CP040094_15	15.37\|3154816\|34\|NZ_CP040094\|PILER-CR	3154816-3154849	34	NZ_CP013541	Rhizobium phaseoli strain R630 plasmid pRphaR630d, complete sequence	679381-679414	11	0.676
NZ_CP040094_15	15.37\|3154816\|34\|NZ_CP040094\|PILER-CR	3154816-3154849	34	NZ_CP013546	Rhizobium phaseoli strain R620 plasmid pRphaR620d, complete sequence	673216-673249	11	0.676
NZ_CP040094_15	15.37\|3154816\|34\|NZ_CP040094\|PILER-CR	3154816-3154849	34	NZ_CP013567	Rhizobium phaseoli strain N831 plasmid pRphaN831d, complete sequence	676589-676622	11	0.676
NZ_CP040094_15	15.37\|3154816\|34\|NZ_CP040094\|PILER-CR	3154816-3154849	34	NZ_CP013573	Rhizobium phaseoli strain N771 plasmid pRphaN771e, complete sequence	658794-658827	11	0.676
NZ_CP040094_15	15.37\|3154816\|34\|NZ_CP040094\|PILER-CR	3154816-3154849	34	NC_010997	Rhizobium etli CIAT 652 plasmid pC, complete sequence	655059-655092	11	0.676
NZ_CP040094_27	27.29\|5662166\|34\|NZ_CP040094\|CRISPRCasFinder,CRT,PILER-CR	5662166-5662199	34	DQ163915	Bacteriophage PA11, complete genome	1163-1196	11	0.676
NZ_CP040094_27	27.29\|5662166\|34\|NZ_CP040094\|CRISPRCasFinder,CRT,PILER-CR	5662166-5662199	34	MN855785	Siphoviridae sp. isolate 112, partial genome	8841-8874	11	0.676
NZ_CP040094_27	27.29\|5662166\|34\|NZ_CP040094\|CRISPRCasFinder,CRT,PILER-CR	5662166-5662199	34	NC_007808	Pseudomonas phage PA11, complete genome	1163-1196	11	0.676
NZ_CP040094_27	27.29\|5662166\|34\|NZ_CP040094\|CRISPRCasFinder,CRT,PILER-CR	5662166-5662199	34	MG676466	Pseudomonas phage TC6, complete genome	42001-42034	11	0.676
NZ_CP040094_27	27.20\|5661506\|35\|NZ_CP040094\|CRISPRCasFinder,CRT,PILER-CR	5661506-5661540	35	NZ_CP054213	Erwiniaceae bacterium PD-1 plasmid pPD-1, complete sequence	78625-78659	12	0.657

1. spacer 6.1|1738099|27|NZ_CP040094|CRISPRCasFinder matches to GU070616 (Salmonella phage PVP-SE1, complete genome) position: , mismatch: 6, identity: 0.778

actatcaagcaatatccagcgcgaaga	CRISPR spacer
ttcattaagcaatatccagcacgaagt	Protospacer
 ..**.**************.*****

2. spacer 6.1|1738099|27|NZ_CP040094|CRISPRCasFinder matches to MG969411 (UNVERIFIED: Salmonella phage GE_vB_MG, complete genome) position: , mismatch: 6, identity: 0.778

actatcaagcaatatccagcgcgaaga	CRISPR spacer
ttcattaagcaatatccagcacgaagt	Protospacer
 ..**.**************.*****

3. spacer 6.1|1738099|27|NZ_CP040094|CRISPRCasFinder matches to JX181824 (Salmonella phage SSE-121, complete genome) position: , mismatch: 6, identity: 0.778

actatcaagcaatatccagcgcgaaga	CRISPR spacer
ttcattaagcaatatccagcacgaagt	Protospacer
 ..**.**************.*****

4. spacer 13.9|2676591|31|NZ_CP040094|CRISPRCasFinder,PILER-CR matches to HQ683709 (Planktothrix phage PaV-LD, complete genome) position: , mismatch: 6, identity: 0.806

ctcttccattcaggagtgttatgattcttcc	CRISPR spacer
tgcctacattcaggagaattatgattcttcc	Protospacer
. *.* ********** .*************

5. spacer 9.11|2097011|31|NZ_CP040094|PILER-CR,CRISPRCasFinder,CRT matches to NC_017495 (Lactococcus lactis subsp. cremoris A76 plasmid pQA518, complete sequence) position: , mismatch: 7, identity: 0.774

acaatgccataagattgtcaaaacctcttac	CRISPR spacer
acgctcgtataatattgtcaaaacctctgac	Protospacer
**. *  .**** *************** **

6. spacer 13.5|2676591|32|NZ_CP040094|CRT matches to HQ683709 (Planktothrix phage PaV-LD, complete genome) position: , mismatch: 7, identity: 0.781

ctcttccattcaggagtgttatgattcttcca	CRISPR spacer
tgcctacattcaggagaattatgattcttccc	Protospacer
. *.* ********** .*************

7. spacer 30.1|6500400|32|NZ_CP040094|PILER-CR matches to NZ_CP025426 (Enterococcus faecium strain SC4 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.75

atagttcctgcatcttttgaagtaacagacat	CRISPR spacer
ttcttccatggaccttttgaagtaacagacaa	Protospacer
 *  *.* ** *.******************

8. spacer 30.1|6500400|32|NZ_CP040094|PILER-CR matches to LT603679 (Enterococcus faecium isolate Ef_DMG1500501 genome assembly, plasmid: 2) position: , mismatch: 8, identity: 0.75

atagttcctgcatcttttgaagtaacagacat	CRISPR spacer
ttcttccatggaccttttgaagtaacagacaa	Protospacer
 *  *.* ** *.******************

9. spacer 30.1|6500400|32|NZ_CP040094|PILER-CR matches to NZ_CP040369 (Enterococcus faecium strain VB3240 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

atagttcctgcatcttttgaagtaacagacat	CRISPR spacer
ttcttccatggaccttttgaagtaacagacaa	Protospacer
 *  *.* ** *.******************

10. spacer 30.1|6500400|32|NZ_CP040094|PILER-CR matches to NZ_CP020485 (Enterococcus faecium strain CFSAN059070 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

atagttcctgcatcttttgaagtaacagacat	CRISPR spacer
ttcttccatggaccttttgaagtaacagacaa	Protospacer
 *  *.* ** *.******************

11. spacer 30.1|6500400|32|NZ_CP040094|PILER-CR matches to NZ_CP027401 (Enterococcus faecium strain FDAARGOS_323 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

atagttcctgcatcttttgaagtaacagacat	CRISPR spacer
ttcttccatggaccttttgaagtaacagacaa	Protospacer
 *  *.* ** *.******************

12. spacer 30.1|6500400|32|NZ_CP040094|PILER-CR matches to NZ_CP013995 (Enterococcus faecium strain 6E6 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

atagttcctgcatcttttgaagtaacagacat	CRISPR spacer
ttcttccatggaccttttgaagtaacagacaa	Protospacer
 *  *.* ** *.******************

13. spacer 30.1|6500400|32|NZ_CP040094|PILER-CR matches to NZ_CP027518 (Enterococcus faecium strain AUSMDU00004024 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

atagttcctgcatcttttgaagtaacagacat	CRISPR spacer
ttcttccatggaccttttgaagtaacagacaa	Protospacer
 *  *.* ** *.******************

14. spacer 30.1|6500400|32|NZ_CP040094|PILER-CR matches to NZ_CP027498 (Enterococcus faecium strain AUSMDU00004167 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

atagttcctgcatcttttgaagtaacagacat	CRISPR spacer
ttcttccatggaccttttgaagtaacagacaa	Protospacer
 *  *.* ** *.******************

15. spacer 30.1|6500400|32|NZ_CP040094|PILER-CR matches to NZ_CP027507 (Enterococcus faecium strain AUSMDU00004055 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

atagttcctgcatcttttgaagtaacagacat	CRISPR spacer
ttcttccatggaccttttgaagtaacagacaa	Protospacer
 *  *.* ** *.******************

16. spacer 30.1|6500400|32|NZ_CP040094|PILER-CR matches to NZ_LR135298 (Enterococcus faecium isolate E7429 plasmid 2) position: , mismatch: 8, identity: 0.75

atagttcctgcatcttttgaagtaacagacat	CRISPR spacer
ttcttccatggaccttttgaagtaacagacaa	Protospacer
 *  *.* ** *.******************

17. spacer 30.1|6500400|32|NZ_CP040094|PILER-CR matches to NZ_LR135340 (Enterococcus faecium isolate E7356 plasmid 2) position: , mismatch: 8, identity: 0.75

atagttcctgcatcttttgaagtaacagacat	CRISPR spacer
ttcttccatggaccttttgaagtaacagacaa	Protospacer
 *  *.* ** *.******************

18. spacer 30.1|6500400|32|NZ_CP040094|PILER-CR matches to NZ_CP046076 (Enterococcus faecium strain VRE plasmid p5_03A17012, complete sequence) position: , mismatch: 8, identity: 0.75

atagttcctgcatcttttgaagtaacagacat	CRISPR spacer
ttcttccatggaccttttgaagtaacagacaa	Protospacer
 *  *.* ** *.******************

19. spacer 30.1|6500400|32|NZ_CP040094|PILER-CR matches to NZ_CP027513 (Enterococcus faecium strain AUSMDU00004028 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

atagttcctgcatcttttgaagtaacagacat	CRISPR spacer
ttcttccatggaccttttgaagtaacagacaa	Protospacer
 *  *.* ** *.******************

20. spacer 30.1|6500400|32|NZ_CP040094|PILER-CR matches to NZ_LR135279 (Enterococcus faecium isolate E6975 plasmid 2) position: , mismatch: 8, identity: 0.75

atagttcctgcatcttttgaagtaacagacat	CRISPR spacer
ttcttccatggaccttttgaagtaacagacaa	Protospacer
 *  *.* ** *.******************

21. spacer 30.1|6500400|32|NZ_CP040094|PILER-CR matches to NZ_LR135255 (Enterococcus faecium isolate E7098 plasmid 2) position: , mismatch: 8, identity: 0.75

atagttcctgcatcttttgaagtaacagacat	CRISPR spacer
ttcttccatggaccttttgaagtaacagacaa	Protospacer
 *  *.* ** *.******************

22. spacer 30.1|6500400|32|NZ_CP040094|PILER-CR matches to NZ_LR135198 (Enterococcus faecium isolate E6055 plasmid 2) position: , mismatch: 8, identity: 0.75

atagttcctgcatcttttgaagtaacagacat	CRISPR spacer
ttcttccatggaccttttgaagtaacagacaa	Protospacer
 *  *.* ** *.******************

23. spacer 30.1|6500400|32|NZ_CP040094|PILER-CR matches to NZ_CP019209 (Enterococcus faecium strain 2014-VREF-41 plasmid p41-1, complete sequence) position: , mismatch: 8, identity: 0.75

atagttcctgcatcttttgaagtaacagacat	CRISPR spacer
ttcttccatggaccttttgaagtaacagacaa	Protospacer
 *  *.* ** *.******************

24. spacer 30.1|6500400|32|NZ_CP040094|PILER-CR matches to NZ_CP019989 (Enterococcus faecium isolate 2014-VREF-63 plasmid p63-1, complete sequence) position: , mismatch: 8, identity: 0.75

atagttcctgcatcttttgaagtaacagacat	CRISPR spacer
ttcttccatggaccttttgaagtaacagacaa	Protospacer
 *  *.* ** *.******************

25. spacer 30.1|6500400|32|NZ_CP040094|PILER-CR matches to NZ_LR135429 (Enterococcus faecium isolate E8927 plasmid 2) position: , mismatch: 8, identity: 0.75

atagttcctgcatcttttgaagtaacagacat	CRISPR spacer
ttcttccatggaccttttgaagtaacagacaa	Protospacer
 *  *.* ** *.******************

26. spacer 30.1|6500400|32|NZ_CP040094|PILER-CR matches to NZ_LR135483 (Enterococcus faecium isolate E4456 plasmid 2) position: , mismatch: 8, identity: 0.75

atagttcctgcatcttttgaagtaacagacat	CRISPR spacer
ttcttccatggaccttttgaagtaacagacaa	Protospacer
 *  *.* ** *.******************

27. spacer 30.1|6500400|32|NZ_CP040094|PILER-CR matches to NZ_LR135476 (Enterococcus faecium isolate E8423 plasmid 2) position: , mismatch: 8, identity: 0.75

atagttcctgcatcttttgaagtaacagacat	CRISPR spacer
ttcttccatggaccttttgaagtaacagacaa	Protospacer
 *  *.* ** *.******************

28. spacer 30.1|6500400|32|NZ_CP040094|PILER-CR matches to NZ_LR135175 (Enterococcus faecium isolate E4402 plasmid 2) position: , mismatch: 8, identity: 0.75

atagttcctgcatcttttgaagtaacagacat	CRISPR spacer
ttcttccatggaccttttgaagtaacagacaa	Protospacer
 *  *.* ** *.******************

29. spacer 30.1|6500400|32|NZ_CP040094|PILER-CR matches to NZ_LR135489 (Enterococcus faecium isolate E8414 plasmid 2) position: , mismatch: 8, identity: 0.75

atagttcctgcatcttttgaagtaacagacat	CRISPR spacer
ttcttccatggaccttttgaagtaacagacaa	Protospacer
 *  *.* ** *.******************

30. spacer 30.1|6500400|32|NZ_CP040094|PILER-CR matches to NZ_LR135365 (Enterococcus faecium isolate E8195 plasmid 2) position: , mismatch: 8, identity: 0.75

atagttcctgcatcttttgaagtaacagacat	CRISPR spacer
ttcttccatggaccttttgaagtaacagacaa	Protospacer
 *  *.* ** *.******************

31. spacer 30.1|6500400|32|NZ_CP040094|PILER-CR matches to NZ_LR135415 (Enterococcus faecium isolate E8328 plasmid 2) position: , mismatch: 8, identity: 0.75

atagttcctgcatcttttgaagtaacagacat	CRISPR spacer
ttcttccatggaccttttgaagtaacagacaa	Protospacer
 *  *.* ** *.******************

32. spacer 30.1|6500400|32|NZ_CP040094|PILER-CR matches to NZ_LR135395 (Enterococcus faecium isolate E8290 plasmid 2) position: , mismatch: 8, identity: 0.75

atagttcctgcatcttttgaagtaacagacat	CRISPR spacer
ttcttccatggaccttttgaagtaacagacaa	Protospacer
 *  *.* ** *.******************

33. spacer 30.1|6500400|32|NZ_CP040094|PILER-CR matches to NZ_LR135345 (Enterococcus faecium isolate E8202 plasmid 2) position: , mismatch: 8, identity: 0.75

atagttcctgcatcttttgaagtaacagacat	CRISPR spacer
ttcttccatggaccttttgaagtaacagacaa	Protospacer
 *  *.* ** *.******************

34. spacer 30.1|6500400|32|NZ_CP040094|PILER-CR matches to NZ_LR135409 (Enterococcus faecium isolate E8284 plasmid 2) position: , mismatch: 8, identity: 0.75

atagttcctgcatcttttgaagtaacagacat	CRISPR spacer
ttcttccatggaccttttgaagtaacagacaa	Protospacer
 *  *.* ** *.******************

35. spacer 30.1|6500400|32|NZ_CP040094|PILER-CR matches to NZ_LR135352 (Enterococcus faecium isolate E8014 plasmid 2) position: , mismatch: 8, identity: 0.75

atagttcctgcatcttttgaagtaacagacat	CRISPR spacer
ttcttccatggaccttttgaagtaacagacaa	Protospacer
 *  *.* ** *.******************

36. spacer 30.1|6500400|32|NZ_CP040094|PILER-CR matches to NZ_LR135385 (Enterococcus faecium isolate E7933 plasmid 2) position: , mismatch: 8, identity: 0.75

atagttcctgcatcttttgaagtaacagacat	CRISPR spacer
ttcttccatggaccttttgaagtaacagacaa	Protospacer
 *  *.* ** *.******************

37. spacer 30.1|6500400|32|NZ_CP040094|PILER-CR matches to NZ_LR135373 (Enterococcus faecium isolate E8172 plasmid 2) position: , mismatch: 8, identity: 0.75

atagttcctgcatcttttgaagtaacagacat	CRISPR spacer
ttcttccatggaccttttgaagtaacagacaa	Protospacer
 *  *.* ** *.******************

38. spacer 30.1|6500400|32|NZ_CP040094|PILER-CR matches to NZ_CP045013 (Enterococcus faecium strain LAC7.2 plasmid pI, complete sequence) position: , mismatch: 8, identity: 0.75

atagttcctgcatcttttgaagtaacagacat	CRISPR spacer
ttcttccatggaccttttgaagtaacagacaa	Protospacer
 *  *.* ** *.******************

39. spacer 30.1|6500400|32|NZ_CP040094|PILER-CR matches to NZ_AP022342 (Enterococcus faecium strain KUHS13 plasmid pKO1, complete sequence) position: , mismatch: 8, identity: 0.75

atagttcctgcatcttttgaagtaacagacat	CRISPR spacer
ttcttccatggaccttttgaagtaacagacaa	Protospacer
 *  *.* ** *.******************

40. spacer 30.1|6500400|32|NZ_CP040094|PILER-CR matches to NZ_CP044275 (Enterococcus faecium strain V2937 plasmid pHVH-V2937-1, complete sequence) position: , mismatch: 8, identity: 0.75

atagttcctgcatcttttgaagtaacagacat	CRISPR spacer
ttcttccatggaccttttgaagtaacagacaa	Protospacer
 *  *.* ** *.******************

41. spacer 30.1|6500400|32|NZ_CP040094|PILER-CR matches to NZ_CP019993 (Enterococcus faecium isolate 2014-VREF-268 plasmid p268-1, complete sequence) position: , mismatch: 8, identity: 0.75

atagttcctgcatcttttgaagtaacagacat	CRISPR spacer
ttcttccatggaccttttgaagtaacagacaa	Protospacer
 *  *.* ** *.******************

42. spacer 30.1|6500400|32|NZ_CP040094|PILER-CR matches to NZ_CP035655 (Enterococcus faecium strain UAMSEF_08 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

atagttcctgcatcttttgaagtaacagacat	CRISPR spacer
ttcttccatggaccttttgaagtaacagacaa	Protospacer
 *  *.* ** *.******************

43. spacer 30.1|6500400|32|NZ_CP040094|PILER-CR matches to NZ_CP035661 (Enterococcus faecium strain UAMSEF_09 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

atagttcctgcatcttttgaagtaacagacat	CRISPR spacer
ttcttccatggaccttttgaagtaacagacaa	Protospacer
 *  *.* ** *.******************

44. spacer 30.1|6500400|32|NZ_CP040094|PILER-CR matches to NZ_CP035667 (Enterococcus faecium strain UAMSEF_20 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

atagttcctgcatcttttgaagtaacagacat	CRISPR spacer
ttcttccatggaccttttgaagtaacagacaa	Protospacer
 *  *.* ** *.******************

45. spacer 30.1|6500400|32|NZ_CP040094|PILER-CR matches to NC_017963 (Enterococcus faecium DO plasmid 3, complete sequence) position: , mismatch: 8, identity: 0.75

atagttcctgcatcttttgaagtaacagacat	CRISPR spacer
ttcttccatggaccttttgaagtaacagacaa	Protospacer
 *  *.* ** *.******************

46. spacer 30.1|6500400|32|NZ_CP040094|PILER-CR matches to NZ_LR134096 (Enterococcus faecium isolate E1334 plasmid 2) position: , mismatch: 8, identity: 0.75

atagttcctgcatcttttgaagtaacagacat	CRISPR spacer
ttcttccatggaccttttgaagtaacagacaa	Protospacer
 *  *.* ** *.******************

47. spacer 30.1|6500400|32|NZ_CP040094|PILER-CR matches to NZ_CP035649 (Enterococcus faecium strain UAMSEF_01 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

atagttcctgcatcttttgaagtaacagacat	CRISPR spacer
ttcttccatggaccttttgaagtaacagacaa	Protospacer
 *  *.* ** *.******************

48. spacer 30.1|6500400|32|NZ_CP040094|PILER-CR matches to NZ_CP040850 (Enterococcus faecium strain F17E0263 plasmid p_unnamned1, complete sequence) position: , mismatch: 8, identity: 0.75

atagttcctgcatcttttgaagtaacagacat	CRISPR spacer
ttcttccatggaccttttgaagtaacagacaa	Protospacer
 *  *.* ** *.******************

49. spacer 30.1|6500400|32|NZ_CP040094|PILER-CR matches to NZ_CP018066 (Enterococcus faecium strain E1 plasmid pE1_230, complete sequence) position: , mismatch: 8, identity: 0.75

atagttcctgcatcttttgaagtaacagacat	CRISPR spacer
ttcttccatggaccttttgaagtaacagacaa	Protospacer
 *  *.* ** *.******************

50. spacer 30.1|6500400|32|NZ_CP040094|PILER-CR matches to NZ_CP016164 (Enterococcus faecium strain ISMMS_VRE_11 plasmid ISMMS_VRE11_p1, complete sequence) position: , mismatch: 8, identity: 0.75

atagttcctgcatcttttgaagtaacagacat	CRISPR spacer
ttcttccatggaccttttgaagtaacagacaa	Protospacer
 *  *.* ** *.******************

51. spacer 30.1|6500400|32|NZ_CP040094|PILER-CR matches to NZ_LT598664 (Enterococcus faecium isolate Ef_aus00233 plasmid 2) position: , mismatch: 8, identity: 0.75

atagttcctgcatcttttgaagtaacagacat	CRISPR spacer
ttcttccatggaccttttgaagtaacagacaa	Protospacer
 *  *.* ** *.******************

52. spacer 9.16|2097362|34|NZ_CP040094|PILER-CR,CRISPRCasFinder,CRT matches to NC_017399 (Borreliella burgdorferi N40 plasmid N40_cp9, complete sequence) position: , mismatch: 9, identity: 0.735

tcttctactacaagttgtggttttacaggttgtg	CRISPR spacer
tttattgtagcaagttgtggttttactggttttg	Protospacer
*.* .*.. .**************** **** **

53. spacer 9.16|2097362|34|NZ_CP040094|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031399 (Borreliella burgdorferi strain MM1 plasmid plsm_cp9, complete sequence) position: , mismatch: 9, identity: 0.735

tcttctactacaagttgtggttttacaggttgtg	CRISPR spacer
tttattgtagcaagttgtggttttactggttttg	Protospacer
*.* .*.. .**************** **** **

54. spacer 9.16|2097362|34|NZ_CP040094|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017210 (Borreliella burgdorferi strain B331 plasmid B331_cp9, complete sequence) position: , mismatch: 9, identity: 0.735

tcttctactacaagttgtggttttacaggttgtg	CRISPR spacer
tttattgtagcaagttgtggttttactggttttg	Protospacer
*.* .*.. .**************** **** **

55. spacer 9.16|2097362|34|NZ_CP040094|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AF292711 (Borreliella burgdorferi N40 plasmid cp9, complete sequence) position: , mismatch: 9, identity: 0.735

tcttctactacaagttgtggttttacaggttgtg	CRISPR spacer
tttattgtagcaagttgtggttttactggttttg	Protospacer
*.* .*.. .**************** **** **

56. spacer 12.1|2397940|32|NZ_CP040094|CRISPRCasFinder matches to MF351863 (Synechococcus phage Bellamy, complete genome) position: , mismatch: 9, identity: 0.719

tatggaggatcaattgttgcaaagtatgaatg	CRISPR spacer
gtagaatcatcaatagttgcaaagtatgcata	Protospacer
   *.*  ****** ************* **.

57. spacer 12.1|2397940|32|NZ_CP040094|CRISPRCasFinder matches to MH319745 (Marine virus AG-345-E15 Ga0172270_15 genomic sequence) position: , mismatch: 9, identity: 0.719

tatggaggatcaattgttgcaaagtatgaatg	CRISPR spacer
ccagaatcatcaattgttgcaaagtaagcata	Protospacer
.  *.*  ****************** * **.

58. spacer 15.16|3154671|34|NZ_CP040094|CRISPRCasFinder,CRT matches to MN831413 (Enterococcus faecium strain M17/0314 plasmid pM17/0314, complete sequence) position: , mismatch: 9, identity: 0.735

atacgaagaaatcgcagcatcatcatttttagat	CRISPR spacer
tagcgaagaaatctcagcatcatcactttggggg	Protospacer
  .********** ***********.*** .*.

59. spacer 15.16|3154671|34|NZ_CP040094|CRISPRCasFinder,CRT matches to NZ_CP039730 (Enterococcus faecium strain ZY2 plasmid pZY2) position: , mismatch: 9, identity: 0.735

atacgaagaaatcgcagcatcatcatttttagat	CRISPR spacer
tagcgaagaaatctcagcatcatcactttggggg	Protospacer
  .********** ***********.*** .*.

60. spacer 15.16|3154671|34|NZ_CP040094|CRISPRCasFinder,CRT matches to NZ_MG640601 (Enterococcus faecium strain SRR6 plasmid pEMSRR6, complete sequence) position: , mismatch: 9, identity: 0.735

atacgaagaaatcgcagcatcatcatttttagat	CRISPR spacer
tagcgaagaaatctcagcatcatcactttggggg	Protospacer
  .********** ***********.*** .*.

61. spacer 15.16|3154671|34|NZ_CP040094|CRISPRCasFinder,CRT matches to NZ_LT598665 (Enterococcus faecium isolate Ef_aus00233 plasmid 3) position: , mismatch: 9, identity: 0.735

atacgaagaaatcgcagcatcatcatttttagat	CRISPR spacer
tagcgaagaaatctcagcatcatcactttggggg	Protospacer
  .********** ***********.*** .*.

62. spacer 15.35|3154673|34|NZ_CP040094|PILER-CR matches to MN831413 (Enterococcus faecium strain M17/0314 plasmid pM17/0314, complete sequence) position: , mismatch: 9, identity: 0.735

atacgaagaaatcgcagcatcatcatttttagat	CRISPR spacer
tagcgaagaaatctcagcatcatcactttggggg	Protospacer
  .********** ***********.*** .*.

63. spacer 15.35|3154673|34|NZ_CP040094|PILER-CR matches to NZ_CP039730 (Enterococcus faecium strain ZY2 plasmid pZY2) position: , mismatch: 9, identity: 0.735

atacgaagaaatcgcagcatcatcatttttagat	CRISPR spacer
tagcgaagaaatctcagcatcatcactttggggg	Protospacer
  .********** ***********.*** .*.

64. spacer 15.35|3154673|34|NZ_CP040094|PILER-CR matches to NZ_MG640601 (Enterococcus faecium strain SRR6 plasmid pEMSRR6, complete sequence) position: , mismatch: 9, identity: 0.735

atacgaagaaatcgcagcatcatcatttttagat	CRISPR spacer
tagcgaagaaatctcagcatcatcactttggggg	Protospacer
  .********** ***********.*** .*.

65. spacer 15.35|3154673|34|NZ_CP040094|PILER-CR matches to NZ_LT598665 (Enterococcus faecium isolate Ef_aus00233 plasmid 3) position: , mismatch: 9, identity: 0.735

atacgaagaaatcgcagcatcatcatttttagat	CRISPR spacer
tagcgaagaaatctcagcatcatcactttggggg	Protospacer
  .********** ***********.*** .*.

66. spacer 27.1|5660115|33|NZ_CP040094|CRISPRCasFinder,CRT matches to NC_009621 (Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence) position: , mismatch: 9, identity: 0.727

gtttggcgtgttccagatgtctgaaggcgttcc	CRISPR spacer
ccttggcgtgttccagatcgctgaagaaacgcc	Protospacer
 .****************  ******. .. **

67. spacer 27.29|5662166|34|NZ_CP040094|CRISPRCasFinder,CRT,PILER-CR matches to CP040041 (Acinetobacter baumannii strain VB958 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

gggcagcagcatcagcttgagtctgagctaaaag	CRISPR spacer
caggagcagcaccagcttgagtctgagcaactgc	Protospacer
 .* *******.**************** *  .

68. spacer 30.1|6500400|32|NZ_CP040094|PILER-CR matches to NZ_CP030828 (Neorhizobium sp. NCHU2750 plasmid pNCHU2750a, complete sequence) position: , mismatch: 9, identity: 0.719

atagttcctgcatcttttgaagtaacagacat	CRISPR spacer
acagttcctgcatcttttgaggaaattcagcc	Protospacer
*.******************.* **.  *  .

69. spacer 4.2|1113235|32|NZ_CP040094|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP043762 (Paenibacillus sp. 37 plasmid pART37, complete sequence) position: , mismatch: 10, identity: 0.688

tcatattctctctgttgatctaggactgacat	CRISPR spacer
ccattttctctctgttgatctgggaagcggtc	Protospacer
.*** ****************.***   .  .

70. spacer 9.16|2097362|34|NZ_CP040094|PILER-CR,CRISPRCasFinder,CRT matches to KJ019089 (Synechococcus phage ACG-2014j isolate Syn7803US23, complete genome) position: , mismatch: 10, identity: 0.706

tcttctactacaagttgtggttttacaggttgtg	CRISPR spacer
gcagttactacaatttgtggtttgacaggaacag	Protospacer
 *  .******** ********* *****    *

71. spacer 10.4|2110787|33|NZ_CP040094|PILER-CR,CRISPRCasFinder,CRT matches to AP014395 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S45-C86, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.697

ttgacagtgtgaaagtttctaccatctgtacta	CRISPR spacer
ataacattgttaaagtttctaccatctaagtct	Protospacer
 *.*** *** ****************. ...

72. spacer 27.3|5660256|37|NZ_CP040094|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP017566 (Pseudanabaena sp. ABRG5-3 plasmid ABRG53f, complete sequence) position: , mismatch: 10, identity: 0.73

ttaaattgtgattcagcataaatttgataagatgcaa	CRISPR spacer
tcaaattgtgatttagaataaatttgatgggtaggtt	Protospacer
*.***********.** ***********..*  *

73. spacer 15.18|3154814|34|NZ_CP040094|CRISPRCasFinder,CRT matches to NZ_CP020900 (Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5d, complete sequence) position: , mismatch: 11, identity: 0.676

gtgaagaagataattgagaactacttttttatgc	CRISPR spacer
cgcaagaagattattgagaactcctttgccagat	Protospacer
   ******** ********** **** ..* ..

74. spacer 15.18|3154814|34|NZ_CP040094|CRISPRCasFinder,CRT matches to NZ_CP013556 (Rhizobium phaseoli strain N931 plasmid pRphaN931d, complete sequence) position: , mismatch: 11, identity: 0.676

gtgaagaagataattgagaactacttttttatgc	CRISPR spacer
cgcaagaagattattgagaactcctttgccagat	Protospacer
   ******** ********** **** ..* ..

75. spacer 15.18|3154814|34|NZ_CP040094|CRISPRCasFinder,CRT matches to NZ_CP013589 (Rhizobium phaseoli strain N161 plasmid pRphaN161d, complete sequence) position: , mismatch: 11, identity: 0.676

gtgaagaagataattgagaactacttttttatgc	CRISPR spacer
cgcaagaagattattgagaactcctttgccagat	Protospacer
   ******** ********** **** ..* ..

76. spacer 15.18|3154814|34|NZ_CP040094|CRISPRCasFinder,CRT matches to NZ_CP013579 (Rhizobium phaseoli strain N671 plasmid pRphaN671e, complete sequence) position: , mismatch: 11, identity: 0.676

gtgaagaagataattgagaactacttttttatgc	CRISPR spacer
cgcaagaagattattgagaactcctttgccagat	Protospacer
   ******** ********** **** ..* ..

77. spacer 15.18|3154814|34|NZ_CP040094|CRISPRCasFinder,CRT matches to NZ_CP013536 (Rhizobium phaseoli strain R650 plasmid pRphaR650d, complete sequence) position: , mismatch: 11, identity: 0.676

gtgaagaagataattgagaactacttttttatgc	CRISPR spacer
cgcaagaagattattgagaactcctttgccagat	Protospacer
   ******** ********** **** ..* ..

78. spacer 15.18|3154814|34|NZ_CP040094|CRISPRCasFinder,CRT matches to NZ_CP013541 (Rhizobium phaseoli strain R630 plasmid pRphaR630d, complete sequence) position: , mismatch: 11, identity: 0.676

gtgaagaagataattgagaactacttttttatgc	CRISPR spacer
cgcaagaagattattgagaactcctttgccagat	Protospacer
   ******** ********** **** ..* ..

79. spacer 15.18|3154814|34|NZ_CP040094|CRISPRCasFinder,CRT matches to NZ_CP013546 (Rhizobium phaseoli strain R620 plasmid pRphaR620d, complete sequence) position: , mismatch: 11, identity: 0.676

gtgaagaagataattgagaactacttttttatgc	CRISPR spacer
cgcaagaagattattgagaactcctttgccagat	Protospacer
   ******** ********** **** ..* ..

80. spacer 15.18|3154814|34|NZ_CP040094|CRISPRCasFinder,CRT matches to NZ_CP013567 (Rhizobium phaseoli strain N831 plasmid pRphaN831d, complete sequence) position: , mismatch: 11, identity: 0.676

gtgaagaagataattgagaactacttttttatgc	CRISPR spacer
cgcaagaagattattgagaactcctttgccagat	Protospacer
   ******** ********** **** ..* ..

81. spacer 15.18|3154814|34|NZ_CP040094|CRISPRCasFinder,CRT matches to NZ_CP013573 (Rhizobium phaseoli strain N771 plasmid pRphaN771e, complete sequence) position: , mismatch: 11, identity: 0.676

gtgaagaagataattgagaactacttttttatgc	CRISPR spacer
cgcaagaagattattgagaactcctttgccagat	Protospacer
   ******** ********** **** ..* ..

82. spacer 15.18|3154814|34|NZ_CP040094|CRISPRCasFinder,CRT matches to NC_010997 (Rhizobium etli CIAT 652 plasmid pC, complete sequence) position: , mismatch: 11, identity: 0.676

gtgaagaagataattgagaactacttttttatgc	CRISPR spacer
cgcaagaagattattgagaactcctttgccagat	Protospacer
   ******** ********** **** ..* ..

83. spacer 15.37|3154816|34|NZ_CP040094|PILER-CR matches to NZ_CP020900 (Rhizobium phaseoli Brasil 5 strain Bra5 plasmid pRphaBra5d, complete sequence) position: , mismatch: 11, identity: 0.676

gtgaagaagataattgagaactacttttttatgc	CRISPR spacer
cgcaagaagattattgagaactcctttgccagat	Protospacer
   ******** ********** **** ..* ..

84. spacer 15.37|3154816|34|NZ_CP040094|PILER-CR matches to NZ_CP013556 (Rhizobium phaseoli strain N931 plasmid pRphaN931d, complete sequence) position: , mismatch: 11, identity: 0.676

gtgaagaagataattgagaactacttttttatgc	CRISPR spacer
cgcaagaagattattgagaactcctttgccagat	Protospacer
   ******** ********** **** ..* ..

85. spacer 15.37|3154816|34|NZ_CP040094|PILER-CR matches to NZ_CP013589 (Rhizobium phaseoli strain N161 plasmid pRphaN161d, complete sequence) position: , mismatch: 11, identity: 0.676

gtgaagaagataattgagaactacttttttatgc	CRISPR spacer
cgcaagaagattattgagaactcctttgccagat	Protospacer
   ******** ********** **** ..* ..

86. spacer 15.37|3154816|34|NZ_CP040094|PILER-CR matches to NZ_CP013579 (Rhizobium phaseoli strain N671 plasmid pRphaN671e, complete sequence) position: , mismatch: 11, identity: 0.676

gtgaagaagataattgagaactacttttttatgc	CRISPR spacer
cgcaagaagattattgagaactcctttgccagat	Protospacer
   ******** ********** **** ..* ..

87. spacer 15.37|3154816|34|NZ_CP040094|PILER-CR matches to NZ_CP013536 (Rhizobium phaseoli strain R650 plasmid pRphaR650d, complete sequence) position: , mismatch: 11, identity: 0.676

gtgaagaagataattgagaactacttttttatgc	CRISPR spacer
cgcaagaagattattgagaactcctttgccagat	Protospacer
   ******** ********** **** ..* ..

88. spacer 15.37|3154816|34|NZ_CP040094|PILER-CR matches to NZ_CP013541 (Rhizobium phaseoli strain R630 plasmid pRphaR630d, complete sequence) position: , mismatch: 11, identity: 0.676

gtgaagaagataattgagaactacttttttatgc	CRISPR spacer
cgcaagaagattattgagaactcctttgccagat	Protospacer
   ******** ********** **** ..* ..

89. spacer 15.37|3154816|34|NZ_CP040094|PILER-CR matches to NZ_CP013546 (Rhizobium phaseoli strain R620 plasmid pRphaR620d, complete sequence) position: , mismatch: 11, identity: 0.676

gtgaagaagataattgagaactacttttttatgc	CRISPR spacer
cgcaagaagattattgagaactcctttgccagat	Protospacer
   ******** ********** **** ..* ..

90. spacer 15.37|3154816|34|NZ_CP040094|PILER-CR matches to NZ_CP013567 (Rhizobium phaseoli strain N831 plasmid pRphaN831d, complete sequence) position: , mismatch: 11, identity: 0.676

gtgaagaagataattgagaactacttttttatgc	CRISPR spacer
cgcaagaagattattgagaactcctttgccagat	Protospacer
   ******** ********** **** ..* ..

91. spacer 15.37|3154816|34|NZ_CP040094|PILER-CR matches to NZ_CP013573 (Rhizobium phaseoli strain N771 plasmid pRphaN771e, complete sequence) position: , mismatch: 11, identity: 0.676

gtgaagaagataattgagaactacttttttatgc	CRISPR spacer
cgcaagaagattattgagaactcctttgccagat	Protospacer
   ******** ********** **** ..* ..

92. spacer 15.37|3154816|34|NZ_CP040094|PILER-CR matches to NC_010997 (Rhizobium etli CIAT 652 plasmid pC, complete sequence) position: , mismatch: 11, identity: 0.676

gtgaagaagataattgagaactacttttttatgc	CRISPR spacer
cgcaagaagattattgagaactcctttgccagat	Protospacer
   ******** ********** **** ..* ..

93. spacer 27.29|5662166|34|NZ_CP040094|CRISPRCasFinder,CRT,PILER-CR matches to DQ163915 (Bacteriophage PA11, complete genome) position: , mismatch: 11, identity: 0.676

gggcagcagcatcagcttgagtctgagctaaaag	CRISPR spacer
ctaatgcagcatcagcttcggtctgagctgtttg	Protospacer
  .  ************* .*********.   *

94. spacer 27.29|5662166|34|NZ_CP040094|CRISPRCasFinder,CRT,PILER-CR matches to MN855785 (Siphoviridae sp. isolate 112, partial genome) position: , mismatch: 11, identity: 0.676

gggcagcagcatcagcttgagtctgagctaaaag	CRISPR spacer
aggcatcagcatcagcttgactctggttttgcgt	Protospacer
.**** ************** ****. .* . .

95. spacer 27.29|5662166|34|NZ_CP040094|CRISPRCasFinder,CRT,PILER-CR matches to NC_007808 (Pseudomonas phage PA11, complete genome) position: , mismatch: 11, identity: 0.676

gggcagcagcatcagcttgagtctgagctaaaag	CRISPR spacer
ctaatgcagcatcagcttcggtctgagctgtttg	Protospacer
  .  ************* .*********.   *

96. spacer 27.29|5662166|34|NZ_CP040094|CRISPRCasFinder,CRT,PILER-CR matches to MG676466 (Pseudomonas phage TC6, complete genome) position: , mismatch: 11, identity: 0.676

gggcagcagcatcagcttgagtctgagctaaaag	CRISPR spacer
ctaatgcagcatcagcttcggtctgagctgtttg	Protospacer
  .  ************* .*********.   *

97. spacer 27.20|5661506|35|NZ_CP040094|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054213 (Erwiniaceae bacterium PD-1 plasmid pPD-1, complete sequence) position: , mismatch: 12, identity: 0.657

ccctttgcagtggggagaggaggatgaagattttt	CRISPR spacer
ggagctggagtggggtgaggaggatgaagacgggg	Protospacer
    .** ******* **************.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

243209 : 313943

Bacillus_phage(62.5%)

tRNA,transposase,bacteriocin

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_174708132.1\|243209_243851_-\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_174708133.1\|244002_244278_-	TatA/E family twin arginine-targeting protein translocase	NA	NA	NA	NA
WP_094327589.1\|244428_244632_-	photosystem II reaction center protein PsbH	NA	NA	NA	NA
WP_174708134.1\|244717_244849_+	photosystem II reaction center protein PsbN	NA	NA	NA	NA
WP_174708135.1\|244932_248178_-	alpha-mannosidase	NA	NA	NA	NA
WP_174708136.1\|248265_249915_+	hypothetical protein	NA	NA	NA	NA
WP_174708137.1\|250236_251259_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_174708138.1\|252897_254604_-	S-layer homology domain-containing protein	NA	NA	NA	NA
WP_174708139.1\|255475_258712_-	PAS domain-containing protein	W8CYF6	Bacillus_phage	1.4e-24	32.5
WP_174708140.1\|259326_260406_-	hypothetical protein	NA	NA	NA	NA
WP_174708141.1\|260459_261443_-	hypothetical protein	NA	NA	NA	NA
WP_174708142.1\|261909_262662_+	response regulator transcription factor	W8CYM9	Bacillus_phage	8.7e-39	40.2
WP_174708143.1\|262715_264035_+	histidine kinase	W8CYF6	Bacillus_phage	9.9e-22	29.5
WP_174708144.1\|264063_264732_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA
WP_174708145.1\|265286_266723_-	hypothetical protein	NA	NA	NA	NA
WP_174708146.1\|267718_268960_+	glycosyltransferase	NA	NA	NA	NA
WP_174708147.1\|269692_270322_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
WP_174708148.1\|270454_272128_+	iron uptake porin	Q5GQG9	Synechococcus_phage	2.1e-08	28.4
WP_174708149.1\|272209_272476_-	hypothetical protein	NA	NA	NA	NA
WP_174708150.1\|272744_273350_+	DUF3318 domain-containing protein	NA	NA	NA	NA
WP_114082889.1\|274168_274573_-	hypothetical protein	NA	NA	NA	NA
WP_174708151.1\|274994_276485_-	carotene isomerase	NA	NA	NA	NA
WP_174708152.1\|277113_277764_+	uracil phosphoribosyltransferase	NA	NA	NA	NA
WP_174708153.1\|277841_278195_+	hypothetical protein	NA	NA	NA	NA
WP_012410570.1\|278323_278602_+	YggT family protein	NA	NA	NA	NA
WP_174708154.1\|278890_280108_-	ABC transporter permease	NA	NA	NA	NA
WP_174708155.1\|280118_281585_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_174708156.1\|283852_284863_+\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
WP_174708157.1\|284922_285843_+	methylenetetrahydrofolate reductase	NA	NA	NA	NA
WP_174708158.1\|285968_286805_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_174708159.1\|286866_287424_-	phosphate-starvation-inducible PsiE family protein	NA	NA	NA	NA
WP_174708160.1\|287504_288425_-	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_174708161.1\|288883_290932_+	elongation factor G	E4ZFJ7	Streptococcus_phage	1.2e-37	24.2
WP_174708162.1\|291042_292674_-\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_174708163.1\|293796_294192_-	hypothetical protein	NA	NA	NA	NA
WP_174708164.1\|294375_295161_-	DUF4058 family protein	NA	NA	NA	NA
WP_174708165.1\|295436_296333_+	prohibitin family protein	A0A172JI70	Bacillus_phage	8.2e-20	30.2
WP_174707947.1\|296329_296467_-	hypothetical protein	NA	NA	NA	NA
WP_174708166.1\|296470_296782_-	hypothetical protein	NA	NA	NA	NA
WP_174708167.1\|296956_298294_-\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_174708168.1\|299485_300136_+	Uma2 family endonuclease	NA	NA	NA	NA
WP_174713491.1\|300249_300642_+	nuclease	NA	NA	NA	NA
WP_174708169.1\|300721_301561_-	DNA/RNA non-specific endonuclease	NA	NA	NA	NA
WP_174708170.1\|301878_302376_-	hypothetical protein	NA	NA	NA	NA
WP_174708171.1\|302642_302828_+\|transposase	transposase	NA	NA	NA	NA
WP_174708172.1\|302899_304183_-	S41 family peptidase	A0A0R6PIZ1	Moraxella_phage	1.2e-27	28.3
WP_174708173.1\|304489_305716_-	(E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	NA	NA	NA	NA
WP_174708174.1\|305941_306913_-	glutathione S-transferase family protein	NA	NA	NA	NA
WP_174708175.1\|307195_307426_+	hypothetical protein	NA	NA	NA	NA
WP_174708176.1\|307459_309676_+	PAS domain S-box protein	NA	NA	NA	NA
WP_174708177.1\|310383_310839_+	hypothetical protein	NA	NA	NA	NA
WP_174708178.1\|311069_313943_-\|bacteriocin	NHLP bacteriocin export ABC transporter permease/ATPase subunit	W8CYL7	Bacillus_phage	1.2e-35	26.9

DBSCAN-SWA_2

953704 : 1022337

uncultured_Mediterranean_phage(25.0%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_174708235.1\|953704_954771_-\|transposase	ISKra4 family transposase	NA	NA	NA	NA
WP_174708611.1\|954907_955159_+	hypothetical protein	NA	NA	NA	NA
WP_174708612.1\|955211_955709_+	hypothetical protein	NA	NA	NA	NA
WP_174708613.1\|955852_956629_+	AIM24 family protein	NA	NA	NA	NA
WP_174708614.1\|957062_962405_+	hypothetical protein	A0A1B1IPM9	uncultured_Mediterranean_phage	6.6e-08	30.7
WP_174708615.1\|963182_964442_-	FAD-dependent hydroxylase	NA	NA	NA	NA
WP_174708616.1\|964628_964820_-	hypothetical protein	NA	NA	NA	NA
WP_174708617.1\|965037_965796_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
WP_174708618.1\|965989_967285_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_174708619.1\|967595_969167_-	metallophosphoesterase	NA	NA	NA	NA
WP_174708620.1\|969379_969775_-	hypothetical protein	NA	NA	NA	NA
WP_174708621.1\|969909_970176_+\|transposase	transposase	NA	NA	NA	NA
WP_174708622.1\|970370_970631_+	hypothetical protein	NA	NA	NA	NA
WP_174708623.1\|970664_971102_+	nitrogen fixation protein	NA	NA	NA	NA
WP_174708624.1\|971446_971764_+	Nif11-like leader peptide family natural product precursor	NA	NA	NA	NA
WP_174708625.1\|971828_972182_+	Nif11-like leader peptide family natural product precursor	NA	NA	NA	NA
WP_174708626.1\|972268_973525_+	nif11-class peptide radical SAM maturase 3	NA	NA	NA	NA
WP_174707951.1\|973559_973760_+	hypothetical protein	NA	NA	NA	NA
WP_174708627.1\|973997_975158_+	aminoglycoside phosphotransferase family protein	NA	NA	NA	NA
WP_174708628.1\|975183_976296_+	hypothetical protein	NA	NA	NA	NA
WP_174708629.1\|976295_977312_+	aldo/keto reductase	NA	NA	NA	NA
WP_174708630.1\|977335_978085_+	peptidylprolyl isomerase	NA	NA	NA	NA
WP_174708631.1\|978397_978616_+	hypothetical protein	NA	NA	NA	NA
WP_174708632.1\|978642_978834_+	hypothetical protein	NA	NA	NA	NA
WP_174708633.1\|979363_979579_+	hypothetical protein	NA	NA	NA	NA
WP_174708634.1\|979605_979797_+	hypothetical protein	NA	NA	NA	NA
WP_174708635.1\|979967_980225_+	hypothetical protein	NA	NA	NA	NA
WP_174708636.1\|980365_981124_-	peptidylprolyl isomerase	NA	NA	NA	NA
WP_174708637.1\|981248_982772_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_174708638.1\|982890_985653_-	peptidase domain-containing ABC transporter	W8CYL7	Bacillus_phage	4.7e-58	34.1
WP_174708639.1\|985546_986272_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_174708235.1\|987900_988967_-\|transposase	ISKra4 family transposase	NA	NA	NA	NA
WP_174708640.1\|989090_989969_+	SWIM zinc finger domain-containing protein	NA	NA	NA	NA
WP_174708641.1\|989970_994182_+	DEAD/DEAH box helicase	A0A160DHD3	Gordonia_phage	4.9e-38	27.4
WP_174708067.1\|994400_995215_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_174708642.1\|995379_995730_+	hypothetical protein	NA	NA	NA	NA
WP_174708643.1\|996193_997546_+	histidine phosphatase family protein	NA	NA	NA	NA
WP_174708644.1\|997731_999057_+	dihydroorotase	NA	NA	NA	NA
WP_174713519.1\|999111_999378_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_174713520.1\|999800_1000289_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_174708645.1\|1000377_1000779_-	VOC family protein	NA	NA	NA	NA
WP_174708646.1\|1000798_1001596_-	acetolactate decarboxylase	NA	NA	NA	NA
WP_174708647.1\|1002092_1003040_+	zinc-binding dehydrogenase	NA	NA	NA	NA
WP_174708648.1\|1003190_1003991_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_174708649.1\|1004066_1004981_+	TauD/TfdA family dioxygenase	NA	NA	NA	NA
WP_174708650.1\|1005772_1006573_+	RMD1 family protein	NA	NA	NA	NA
WP_174713521.1\|1006892_1007498_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_012412287.1\|1007652_1007865_+	DUF2555 domain-containing protein	NA	NA	NA	NA
WP_174708651.1\|1007976_1009182_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	A0A1V0S7W6	Shearwaterpox_virus	3.3e-24	38.5
WP_174708652.1\|1009328_1010846_+	hypothetical protein	NA	NA	NA	NA
WP_174708653.1\|1010829_1014237_+	hypothetical protein	NA	NA	NA	NA
WP_174708654.1\|1014239_1017398_+	DUF3893 domain-containing protein	NA	NA	NA	NA
WP_174708655.1\|1017917_1018274_+	hypothetical protein	NA	NA	NA	NA
WP_174713522.1\|1018377_1019400_+	radical SAM protein	NA	NA	NA	NA
WP_174708656.1\|1019748_1021230_+\|protease	site-2 protease family protein	NA	NA	NA	NA
WP_174708657.1\|1021443_1022337_+\|transposase	transposase family protein	NA	NA	NA	NA

DBSCAN-SWA_3

1762331 : 1805881

Ralstonia_phage(33.33%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_174709164.1\|1762331_1763240_+\|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	NA	NA	NA	NA
WP_174709165.1\|1763715_1764063_-\|transposase	transposase	NA	NA	NA	NA
WP_174709166.1\|1765535_1765889_+	hypothetical protein	NA	NA	NA	NA
WP_174709167.1\|1765910_1766141_-	hypothetical protein	NA	NA	NA	NA
WP_174709168.1\|1766428_1767397_-	TauD/TfdA family dioxygenase	NA	NA	NA	NA
WP_174709169.1\|1767746_1769783_-	NAD-dependent DNA ligase LigA	A0A0K2QQN8	Ralstonia_phage	2.0e-122	38.8
WP_174709170.1\|1769882_1770101_-	hypothetical protein	NA	NA	NA	NA
WP_174709171.1\|1770556_1771507_+	hypothetical protein	NA	NA	NA	NA
WP_174708167.1\|1772952_1774290_+\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_174709172.1\|1775070_1775766_-	SAM-dependent methyltransferase	NA	NA	NA	NA
WP_174713557.1\|1775973_1777080_-	iron-containing redox enzyme family protein	NA	NA	NA	NA
WP_174709173.1\|1777394_1779233_-	penicillin-binding protein 2	NA	NA	NA	NA
WP_174709174.1\|1779338_1780052_-	hypothetical protein	NA	NA	NA	NA
WP_174709175.1\|1780553_1780751_+	hypothetical protein	NA	NA	NA	NA
WP_174709176.1\|1781282_1781618_+	hypothetical protein	NA	NA	NA	NA
WP_174709177.1\|1781781_1784073_+	1,4-alpha-glucan branching enzyme	NA	NA	NA	NA
WP_174709178.1\|1784181_1784790_-	3-isopropylmalate dehydratase small subunit	NA	NA	NA	NA
WP_174709179.1\|1784857_1786261_-	3-isopropylmalate dehydratase large subunit	NA	NA	NA	NA
WP_012406985.1\|1786913_1787186_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
WP_174709180.1\|1787671_1788502_+	metallophosphoesterase	NA	NA	NA	NA
WP_174709181.1\|1788720_1789554_+	metallophosphoesterase	NA	NA	NA	NA
WP_174709182.1\|1790076_1790829_-	hypothetical protein	NA	NA	NA	NA
WP_174709183.1\|1791352_1791982_-	DnaJ domain-containing protein	E3T4P7	Cafeteria_roenbergensis_virus	3.1e-05	48.1
WP_174709184.1\|1792014_1793112_+	tocopherol cyclase	NA	NA	NA	NA
WP_174709185.1\|1794273_1795425_+	sensor domain-containing diguanylate cyclase	NA	NA	NA	NA
WP_174708162.1\|1795804_1797436_+\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_174709186.1\|1797714_1798170_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_174709187.1\|1798460_1798622_+	DUF1392 family protein	NA	NA	NA	NA
WP_174713558.1\|1798631_1798880_+	DUF1392 family protein	NA	NA	NA	NA
WP_174709188.1\|1799215_1800661_+	PAS domain-containing protein	NA	NA	NA	NA
WP_174707957.1\|1800677_1800932_+	hypothetical protein	NA	NA	NA	NA
WP_174709189.1\|1801226_1801487_-	HNH endonuclease	NA	NA	NA	NA
WP_174709190.1\|1801749_1802493_+	hypothetical protein	NA	NA	NA	NA
WP_174708330.1\|1802603_1803560_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	9.1e-17	26.7
WP_174709191.1\|1803612_1804464_-\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_174713559.1\|1804762_1805881_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA

DBSCAN-SWA_4

1915133 : 1957516

Leptospira_phage(40.0%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_174708167.1\|1915133_1916471_-\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_174709242.1\|1916830_1917787_+	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_174709243.1\|1918911_1919694_-	hypothetical protein	NA	NA	NA	NA
WP_174709244.1\|1919774_1921406_-\|protease	M48 family metalloprotease	NA	NA	NA	NA
WP_174709245.1\|1921672_1922398_-	Uma2 family endonuclease	NA	NA	NA	NA
WP_174709246.1\|1922575_1922746_-	ssl1498 family light-harvesting-like protein	NA	NA	NA	NA
WP_174709247.1\|1923259_1924306_-	DUF1611 domain-containing protein	NA	NA	NA	NA
WP_174709248.1\|1924289_1925342_-	dipeptide epimerase	NA	NA	NA	NA
WP_174709249.1\|1925464_1926013_+	NUDIX hydrolase	NA	NA	NA	NA
WP_174709250.1\|1926293_1929380_-	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	9.9e-73	24.5
WP_174709251.1\|1929385_1929766_+	hypothetical protein	NA	NA	NA	NA
WP_174709252.1\|1929955_1933078_-	efflux RND transporter permease subunit	S5VTK5	Leptospira_phage	1.1e-74	23.9
WP_174709253.1\|1933074_1934628_-	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_174709254.1\|1934875_1935847_-	RNA polymerase sigma factor, RpoD/SigA family	F4YCU2	Synechococcus_phage	6.1e-45	37.7
WP_174709255.1\|1935975_1936884_-	hypothetical protein	NA	NA	NA	NA
WP_174709256.1\|1936929_1938210_-	S41 family peptidase	A0A0R6PIZ1	Moraxella_phage	3.2e-25	29.3
WP_174709257.1\|1938324_1938696_-	hypothetical protein	NA	NA	NA	NA
WP_174709258.1\|1938970_1940230_+	sensor histidine kinase	NA	NA	NA	NA
WP_174709259.1\|1940233_1940881_+	response regulator transcription factor	NA	NA	NA	NA
WP_174713562.1\|1941454_1941829_+\|transposase	transposase	NA	NA	NA	NA
WP_174709260.1\|1942208_1942361_+	hypothetical protein	NA	NA	NA	NA
WP_174709083.1\|1942715_1943396_-	hypothetical protein	NA	NA	NA	NA
WP_174709084.1\|1943573_1944338_-	hypothetical protein	NA	NA	NA	NA
WP_174713563.1\|1946201_1946855_+	AAA family ATPase	K7R2R7	Vibrio_phage	3.3e-34	41.6
WP_174708067.1\|1946967_1947781_+\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_174713564.1\|1947803_1948046_+	hypothetical protein	NA	NA	NA	NA
WP_174709261.1\|1948148_1948430_+	hypothetical protein	NA	NA	NA	NA
WP_174709262.1\|1950573_1950945_+	hypothetical protein	NA	NA	NA	NA
WP_174709263.1\|1952165_1952831_-	PEP-CTERM sorting domain-containing protein	NA	NA	NA	NA
WP_174709264.1\|1952924_1953083_+	hypothetical protein	NA	NA	NA	NA
WP_174709265.1\|1953420_1953585_-	tautomerase family protein	NA	NA	NA	NA
WP_174709266.1\|1953807_1954536_-	hypothetical protein	NA	NA	NA	NA
WP_174709267.1\|1955938_1956247_-\|transposase	transposase	NA	NA	NA	NA
WP_174708235.1\|1956450_1957516_+\|transposase	ISKra4 family transposase	NA	NA	NA	NA

DBSCAN-SWA_5

1966388 : 2025337

Feldmannia_species_virus(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_174708137.1\|1966388_1967411_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_174709273.1\|1968334_1968661_-	hypothetical protein	NA	NA	NA	NA
WP_174709274.1\|1968709_1968991_-	hypothetical protein	NA	NA	NA	NA
WP_174709275.1\|1969448_1969859_+	peptidoglycan-binding protein	NA	NA	NA	NA
WP_174709276.1\|1970296_1970485_-	hypothetical protein	NA	NA	NA	NA
WP_174713566.1\|1973533_1974862_+	DUF4157 domain-containing protein	NA	NA	NA	NA
WP_174707959.1\|1975085_1975544_-	hypothetical protein	NA	NA	NA	NA
WP_174709277.1\|1978045_1978309_-	hypothetical protein	NA	NA	NA	NA
WP_174709278.1\|1979260_1979860_-	CRISPR-associated protein Cas4	NA	NA	NA	NA
WP_174709279.1\|1979967_1980996_-	CRISPR system precrRNA processing endoribonuclease RAMP protein Cas6	NA	NA	NA	NA
WP_174709280.1\|1984793_1985258_-	DEAD/DEAH box helicase	NA	NA	NA	NA
WP_174709281.1\|1985254_1985425_-	DEAD/DEAH box helicase	NA	NA	NA	NA
WP_174709282.1\|1985688_1986801_+\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_174709283.1\|1988621_1995572_+	AAA family ATPase	B5LWE2	Feldmannia_species_virus	2.1e-06	24.6
WP_174709284.1\|1995555_1996185_+	response regulator transcription factor	NA	NA	NA	NA
WP_174709285.1\|1996430_1997024_+	DsbA family protein	NA	NA	NA	NA
WP_174713567.1\|1998367_2000182_+	PAS domain-containing protein	NA	NA	NA	NA
WP_174709286.1\|2000190_2000820_+	response regulator transcription factor	NA	NA	NA	NA
WP_174709287.1\|2001466_2002024_+	DsbA family protein	NA	NA	NA	NA
WP_174709288.1\|2002123_2002300_+	hypothetical protein	NA	NA	NA	NA
WP_174709289.1\|2002283_2002718_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_174709290.1\|2002815_2003322_+	SgcJ/EcaC family oxidoreductase	NA	NA	NA	NA
WP_174709291.1\|2003507_2004257_+	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	6.4e-18	32.7
WP_174709292.1\|2004789_2006229_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_174709293.1\|2006394_2007387_+	alpha/beta hydrolase	A0A0G2YDK2	Acanthamoeba_polyphaga_mimivirus	6.5e-50	35.6
WP_174709294.1\|2007724_2008120_+	hypothetical protein	NA	NA	NA	NA
WP_174708137.1\|2010273_2011296_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_174709295.1\|2013290_2014478_+	DUF2252 domain-containing protein	NA	NA	NA	NA
WP_174709296.1\|2014711_2015062_+	phospholipid-binding protein	NA	NA	NA	NA
WP_174709297.1\|2015110_2015545_+	hypothetical protein	NA	NA	NA	NA
WP_174709298.1\|2016333_2016813_-	hypothetical protein	NA	NA	NA	NA
WP_174709299.1\|2017134_2017428_-	hypothetical protein	NA	NA	NA	NA
WP_174709300.1\|2017598_2017868_+	hypothetical protein	NA	NA	NA	NA
WP_174709301.1\|2018680_2018932_+	hypothetical protein	NA	NA	NA	NA
WP_174708162.1\|2019617_2021249_+\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_174709302.1\|2021211_2022006_+	hypothetical protein	NA	NA	NA	NA
WP_174709303.1\|2022894_2023788_-\|transposase	transposase family protein	NA	NA	NA	NA
WP_174713568.1\|2024416_2025337_-\|transposase	transposase	A0A218MNH3	uncultured_virus	6.2e-47	37.5

DBSCAN-SWA_6

2654618 : 2721805

Bacillus_phage(33.33%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_174709691.1\|2654618_2655425_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_174709692.1\|2655746_2656868_-	geranylgeranyl reductase family protein	NA	NA	NA	NA
WP_174709693.1\|2657053_2657602_-	ribosome recycling factor	NA	NA	NA	NA
WP_174709694.1\|2657588_2658317_-	UMP kinase	NA	NA	NA	NA
WP_174709695.1\|2658388_2658943_-	thioredoxin family protein	NA	NA	NA	NA
WP_174709696.1\|2659031_2659178_-	hypothetical protein	NA	NA	NA	NA
WP_174709697.1\|2659394_2660297_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_174709698.1\|2661131_2661281_-	hypothetical protein	NA	NA	NA	NA
WP_174709699.1\|2661912_2662128_-	hypothetical protein	NA	NA	NA	NA
WP_174709700.1\|2662450_2662768_-	hypothetical protein	NA	NA	NA	NA
WP_174709701.1\|2662798_2664967_-	peptidase domain-containing ABC transporter	W8CYL7	Bacillus_phage	3.5e-40	26.4
WP_174709702.1\|2665046_2666555_-	HlyD family efflux transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_174709703.1\|2667613_2667901_-	hypothetical protein	NA	NA	NA	NA
WP_174709704.1\|2668432_2669905_+	glycolate oxidase subunit GlcD	NA	NA	NA	NA
WP_174709705.1\|2670372_2670888_+	hypothetical protein	NA	NA	NA	NA
WP_174709706.1\|2671300_2672548_+	glycoside hydrolase family 10 protein	NA	NA	NA	NA
WP_174709707.1\|2672547_2673111_+	hypothetical protein	NA	NA	NA	NA
WP_174709708.1\|2673465_2675712_+	GAF domain-containing protein	W8CYF6	Bacillus_phage	3.4e-22	29.5
WP_174709709.1\|2677119_2679057_-	hypothetical protein	NA	NA	NA	NA
WP_174709710.1\|2679134_2679560_+	MerR family transcriptional regulator	NA	NA	NA	NA
WP_174713608.1\|2679650_2681186_+	SAM-dependent DNA methyltransferase	A0A220A2U4	Liberibacter_phage	3.8e-81	37.9
WP_174709711.1\|2681185_2682250_+	hypothetical protein	NA	NA	NA	NA
WP_174709712.1\|2682242_2683619_+	restriction endonuclease subunit S	NA	NA	NA	NA
WP_174709713.1\|2683664_2684288_+	DUF4433 domain-containing protein	NA	NA	NA	NA
WP_174709714.1\|2684342_2685407_+	macro domain-containing protein	B0FIJ9	Escherichia_phage	4.2e-23	42.0
WP_174709715.1\|2685384_2687055_-	hypothetical protein	NA	NA	NA	NA
WP_174709716.1\|2687316_2690499_+	type I restriction endonuclease subunit R	A0A220A398	Liberibacter_phage	6.2e-54	25.4
WP_174709717.1\|2690495_2691194_+	M48 family metallopeptidase	NA	NA	NA	NA
WP_174709718.1\|2691750_2692587_-	TniB family NTP-binding protein	NA	NA	NA	NA
WP_174713609.1\|2692590_2694282_-\|transposase	Mu transposase C-terminal domain-containing protein	NA	NA	NA	NA
WP_174708017.1\|2698755_2699778_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_174709719.1\|2700045_2701335_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_174709720.1\|2701517_2702954_-	hypothetical protein	NA	NA	NA	NA
WP_174709721.1\|2703018_2703213_-	hypothetical protein	NA	NA	NA	NA
WP_174709722.1\|2703459_2704233_+	hypothetical protein	NA	NA	NA	NA
WP_174709723.1\|2705817_2706702_-	hypothetical protein	NA	NA	NA	NA
WP_174713610.1\|2706772_2707366_-	DUF1517 domain-containing protein	NA	NA	NA	NA
WP_174713611.1\|2707473_2709048_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
WP_174713612.1\|2709117_2709957_+	prephenate/arogenate dehydrogenase	NA	NA	NA	NA
WP_174709724.1\|2710273_2710564_+	hypothetical protein	NA	NA	NA	NA
WP_174709725.1\|2710964_2711108_+	hypothetical protein	NA	NA	NA	NA
WP_174709726.1\|2711091_2711310_+	hypothetical protein	NA	NA	NA	NA
WP_174709727.1\|2711341_2712028_-	Uma2 family endonuclease	NA	NA	NA	NA
WP_174709728.1\|2712044_2712401_-	cupin domain-containing protein	NA	NA	NA	NA
WP_174707960.1\|2712393_2712552_-	hypothetical protein	NA	NA	NA	NA
WP_174709729.1\|2712612_2712963_-	hypothetical protein	NA	NA	NA	NA
WP_174709730.1\|2713126_2714128_-	apocytochrome f	NA	NA	NA	NA
WP_174709731.1\|2714234_2714774_-	cytochrome b6-f complex iron-sulfur subunit	NA	NA	NA	NA
WP_012406962.1\|2715002_2715311_+	DUF3067 family protein	NA	NA	NA	NA
WP_174709732.1\|2715459_2717091_+\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_174709733.1\|2717475_2718003_+	cysteine hydrolase	NA	NA	NA	NA
WP_174709734.1\|2718230_2718809_+	NAD(P)H-dependent oxidoreductase	A0A2P0ZL77	Lactobacillus_phage	1.0e-10	32.6
WP_174709735.1\|2718815_2719190_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_174709736.1\|2719435_2720401_-	acetamidase/formamidase family protein	NA	NA	NA	NA
WP_174708137.1\|2720782_2721805_+\|transposase	IS4 family transposase	NA	NA	NA	NA

DBSCAN-SWA_7

2738030 : 2790545

Hokovirus(22.22%)

tRNA,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_174709748.1\|2738030_2738732_+\|protease	rhomboid family intramembrane serine protease	NA	NA	NA	NA
WP_174709749.1\|2738908_2741545_+	PAS domain S-box protein	A0A1V0SGX0	Hokovirus	2.9e-28	26.5
WP_174709750.1\|2741629_2741947_+	hypothetical protein	NA	NA	NA	NA
WP_174709751.1\|2741953_2743288_+	50S ribosome-binding GTPase	NA	NA	NA	NA
WP_114082400.1\|2743319_2743736_-\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_174709752.1\|2743781_2744036_-	RNA-binding S4 domain-containing protein	NA	NA	NA	NA
WP_174709753.1\|2744147_2744351_-	hypothetical protein	NA	NA	NA	NA
WP_174709754.1\|2744533_2747845_+	helicase	A0A1B1IUI1	uncultured_Mediterranean_phage	7.7e-15	21.2
WP_174709755.1\|2748082_2749177_+	DUF4350 domain-containing protein	NA	NA	NA	NA
WP_114082403.1\|2749249_2750200_+	MoxR family ATPase	NA	NA	NA	NA
WP_174709756.1\|2750325_2750805_+	YbjN domain-containing protein	NA	NA	NA	NA
WP_174709757.1\|2750843_2751569_+	lipoate--protein ligase family protein	NA	NA	NA	NA
WP_174709758.1\|2751767_2752466_-	response regulator transcription factor	NA	NA	NA	NA
WP_174709759.1\|2752532_2753177_+	ATP phosphoribosyltransferase	NA	NA	NA	NA
WP_174709760.1\|2753618_2756180_+	GAF domain-containing protein	A0A1V0SGX0	Hokovirus	1.1e-16	27.3
WP_174709761.1\|2756176_2756623_+	response regulator	NA	NA	NA	NA
WP_174713613.1\|2756628_2758908_+	response regulator	Q6XLV6	Feldmannia_irregularis_virus	1.2e-14	24.3
WP_174709762.1\|2759100_2760012_+	hypothetical protein	NA	NA	NA	NA
WP_174709763.1\|2760017_2760167_+	hypothetical protein	NA	NA	NA	NA
WP_174709764.1\|2760206_2761298_-	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_174709765.1\|2761343_2761541_-	hypothetical protein	NA	NA	NA	NA
WP_174709766.1\|2761744_2761981_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	1.1e-16	56.5
WP_174709767.1\|2762042_2762744_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
WP_174709768.1\|2763220_2763721_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_174709769.1\|2763784_2764132_+\|transposase	transposase	NA	NA	NA	NA
WP_174709770.1\|2764476_2769657_-	hypothetical protein	NA	NA	NA	NA
WP_174709771.1\|2769626_2770964_-	AAA family ATPase	NA	NA	NA	NA
WP_174708235.1\|2771504_2772570_+\|transposase	ISKra4 family transposase	NA	NA	NA	NA
WP_174709772.1\|2772771_2773629_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_174709773.1\|2773848_2774079_-	hypothetical protein	NA	NA	NA	NA
WP_174709774.1\|2774571_2775366_+	twin-arginine translocase subunit TatC	NA	NA	NA	NA
WP_174709775.1\|2775411_2775756_+\|tRNA	tRNA-binding protein	NA	NA	NA	NA
WP_174709776.1\|2775740_2777372_-\|transposase	IS1634 family transposase	NA	NA	NA	NA
WP_174709777.1\|2777813_2778794_-	2-dehydropantoate 2-reductase	NA	NA	NA	NA
WP_174709778.1\|2778838_2779708_-	inositol monophosphatase family protein	NA	NA	NA	NA
WP_174709779.1\|2780297_2780945_-	glutathione S-transferase	NA	NA	NA	NA
WP_174709780.1\|2781106_2781832_-	response regulator transcription factor	W8CYM9	Bacillus_phage	2.3e-36	38.5
WP_174709781.1\|2782177_2782444_+	hypothetical protein	NA	NA	NA	NA
WP_174709782.1\|2782987_2784508_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	1.3e-81	54.6
WP_174713614.1\|2785086_2785719_+	HD domain-containing protein	NA	NA	NA	NA
WP_174709783.1\|2786377_2786629_+	hypothetical protein	NA	NA	NA	NA
WP_174709784.1\|2787288_2787642_+	hypothetical protein	NA	NA	NA	NA
WP_174713615.1\|2787682_2788090_-	hypothetical protein	NA	NA	NA	NA
WP_174709785.1\|2788289_2788910_-	J domain-containing protein	NA	NA	NA	NA
WP_174709786.1\|2789149_2789761_-\|protease	ATP-dependent Clp protease proteolytic subunit	A0A223W000	Agrobacterium_phage	1.3e-45	52.5
WP_174709787.1\|2789882_2790545_-\|protease	ATP-dependent Clp protease proteolytic subunit	G3M9Z8	Bacillus_virus	3.4e-23	37.7

DBSCAN-SWA_8

3030045 : 3100025

Megavirus(16.67%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_174708137.1\|3030045_3031068_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_174709956.1\|3031655_3032189_+	hypothetical protein	NA	NA	NA	NA
WP_174709957.1\|3032897_3033770_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_174709958.1\|3034297_3035695_+	hypothetical protein	NA	NA	NA	NA
WP_174709959.1\|3039173_3039956_+	nucleoside phosphorylase	NA	NA	NA	NA
WP_174709960.1\|3040190_3040772_+\|protease	retroviral-like aspartic protease family protein	NA	NA	NA	NA
WP_012412753.1\|3040797_3041190_+	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
WP_174709961.1\|3041244_3042057_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_174709962.1\|3042440_3042821_-	KGK family protein	NA	NA	NA	NA
WP_174709963.1\|3042934_3045376_-	dynamin-like GTPase family protein	NA	NA	NA	NA
WP_174709964.1\|3045928_3046486_+	HPP family protein	NA	NA	NA	NA
WP_174709965.1\|3046549_3048385_-	signal peptide peptidase SppA	NA	NA	NA	NA
WP_174709966.1\|3048590_3049640_-	type 2 isopentenyl-diphosphate Delta-isomerase	NA	NA	NA	NA
WP_174709967.1\|3050438_3050831_-	hypothetical protein	NA	NA	NA	NA
WP_174709968.1\|3050979_3051222_+	hypothetical protein	NA	NA	NA	NA
WP_174709969.1\|3051302_3051557_-	hypothetical protein	NA	NA	NA	NA
WP_174709970.1\|3051717_3055428_+	HEAT repeat domain-containing protein	NA	NA	NA	NA
WP_174709971.1\|3055499_3055694_-	hypothetical protein	NA	NA	NA	NA
WP_174709972.1\|3055838_3056117_-	hypothetical protein	NA	NA	NA	NA
WP_174708067.1\|3056209_3057024_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_174709973.1\|3057283_3057922_+\|transposase	transposase	NA	NA	NA	NA
WP_174709974.1\|3057978_3059493_-	phenylacetate--CoA ligase family protein	NA	NA	NA	NA
WP_174709975.1\|3059704_3061399_+	serine/threonine protein kinase	G5CRS8	Megavirus	1.4e-07	25.4
WP_174709976.1\|3061497_3063639_+	serine/threonine protein kinase	A0A1V0SBL0	Catovirus	7.2e-06	20.2
WP_174709977.1\|3063772_3064585_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_174709978.1\|3065176_3065548_+	EamA family transporter	NA	NA	NA	NA
WP_174709979.1\|3065601_3066576_-	threo-3-hydroxy-L-aspartate ammonia-lyase	NA	NA	NA	NA
WP_174709980.1\|3066784_3067597_+	SDR family oxidoreductase	NA	NA	NA	NA
WP_174709981.1\|3067842_3068043_+	heavy-metal-associated domain-containing protein	NA	NA	NA	NA
WP_174708017.1\|3068338_3069361_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_174709982.1\|3069486_3070449_-	hypothetical protein	NA	NA	NA	NA
WP_174709983.1\|3070706_3071807_-	3-deoxy-7-phosphoheptulonate synthase	E3T537	Cafeteria_roenbergensis_virus	7.0e-13	27.5
WP_174709984.1\|3072215_3073331_-	anthranilate phosphoribosyltransferase	NA	NA	NA	NA
WP_174709985.1\|3073376_3074606_-	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_174709986.1\|3074732_3075584_-	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_174713628.1\|3075632_3076037_-	hypothetical protein	NA	NA	NA	NA
WP_174709987.1\|3076141_3076969_-	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	5.4e-50	45.2
WP_174709988.1\|3077062_3079294_-	anthranilate synthase	NA	NA	NA	NA
WP_174709989.1\|3079801_3080983_-	3-dehydroquinate synthase	NA	NA	NA	NA
WP_174709990.1\|3081608_3082898_-	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_174709991.1\|3083118_3084315_-	scytonemin biosynthesis PEP-CTERM protein ScyF	NA	NA	NA	NA
WP_174709992.1\|3084489_3085854_-	ScyD/ScyE family protein	NA	NA	NA	NA
WP_174709993.1\|3085924_3087205_-	ScyD/ScyE family protein	NA	NA	NA	NA
WP_174709994.1\|3087262_3088231_-	scytonemin biosynthesis cyclase/decarboxylase ScyC	NA	NA	NA	NA
WP_174709995.1\|3088253_3089315_-	tryptophan dehydrogenase ScyB	NA	NA	NA	NA
WP_174709996.1\|3089739_3091611_-	scytonemin biosynthesis protein ScyA	NA	NA	NA	NA
WP_174709997.1\|3091708_3091861_-	hypothetical protein	NA	NA	NA	NA
WP_174709998.1\|3093389_3095369_+	PAS domain-containing sensor histidine kinase	W8CYF6	Bacillus_phage	1.5e-18	27.4
WP_174709999.1\|3095565_3096417_+	response regulator transcription factor	Q56AR1	Bacillus_thuringiensis_phage	2.0e-07	29.5
WP_012408021.1\|3096598_3097801_-	AAA family ATPase	NA	NA	NA	NA
WP_174710000.1\|3098419_3099583_-	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	NA	NA	NA	NA
WP_174713629.1\|3099713_3100025_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_9

3138625 : 3213519

Cyanophage(28.57%)

tRNA,tail,transposase,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_174710022.1\|3138625_3140086_-\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA	NA	NA	NA
WP_041565237.1\|3140453_3140594_+	hypothetical protein	NA	NA	NA	NA
WP_174710023.1\|3140769_3143685_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_174710024.1\|3143681_3144029_+	cupin domain-containing protein	NA	NA	NA	NA
WP_174710025.1\|3144032_3144623_-	Uma2 family endonuclease	NA	NA	NA	NA
WP_174710026.1\|3144730_3145087_-	hypothetical protein	NA	NA	NA	NA
WP_174710027.1\|3145386_3145692_-	hypothetical protein	NA	NA	NA	NA
WP_174710028.1\|3145963_3148189_-	adenylate/guanylate cyclase domain-containing protein	M1HLN3	Pelagibacter_phage	2.1e-32	25.7
WP_174710029.1\|3148194_3149040_-	DUF928 domain-containing protein	NA	NA	NA	NA
WP_174710030.1\|3149343_3150624_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
WP_174710031.1\|3151048_3151600_+	PEP-CTERM sorting domain-containing protein	NA	NA	NA	NA
WP_174710032.1\|3151826_3153413_+	alkaline phosphatase	NA	NA	NA	NA
WP_174713633.1\|3155446_3156277_+	dienelactone hydrolase family protein	NA	NA	NA	NA
WP_174710033.1\|3156287_3157229_-	hypothetical protein	NA	NA	NA	NA
WP_174710034.1\|3157348_3157591_-	hypothetical protein	NA	NA	NA	NA
WP_174710035.1\|3158226_3161343_-	MFS transporter	NA	NA	NA	NA
WP_174710036.1\|3161971_3162184_+	high light inducible protein	NA	NA	NA	NA
WP_174710037.1\|3162230_3162428_+	high light inducible protein	NA	NA	NA	NA
WP_174713634.1\|3162941_3163559_-	universal stress protein	NA	NA	NA	NA
WP_174713635.1\|3163912_3164749_-	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	8.7e-32	41.4
WP_174710038.1\|3164849_3166292_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_174710039.1\|3166379_3167231_-	nitrate ABC transporter permease	NA	NA	NA	NA
WP_174710040.1\|3167977_3169168_+	HAMP domain-containing histidine kinase	A0A1V0SGX0	Hokovirus	7.6e-21	29.6
WP_174710041.1\|3169226_3169913_-	ribonuclease III	M1HK80	Acanthocystis_turfacea_Chlorella_virus	4.1e-19	37.1
WP_174710042.1\|3170065_3170836_-	NYN domain-containing protein	NA	NA	NA	NA
WP_174710043.1\|3171352_3171961_-	hypothetical protein	NA	NA	NA	NA
WP_174710044.1\|3172004_3172592_-	Uma2 family endonuclease	NA	NA	NA	NA
WP_174710045.1\|3172683_3174717_+	magnesium chelatase ATPase subunit D	NA	NA	NA	NA
WP_012408070.1\|3174775_3175561_-	RNA polymerase sigma factor SigF	C7F449	Cyanophage	3.5e-14	40.0
WP_174710046.1\|3175886_3176615_+	Bax inhibitor-1 family protein	NA	NA	NA	NA
WP_174713636.1\|3177767_3178661_+\|transposase	transposase family protein	NA	NA	NA	NA
WP_174710047.1\|3178745_3179072_-	hypothetical protein	NA	NA	NA	NA
WP_174710048.1\|3179244_3179745_+	membrane protein insertion efficiency factor YidD	NA	NA	NA	NA
WP_174710049.1\|3180025_3180817_+	hypothetical protein	NA	NA	NA	NA
WP_174710050.1\|3181127_3183578_+\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
WP_174710051.1\|3183676_3183946_+	YciI family protein	NA	NA	NA	NA
WP_174710052.1\|3184171_3184966_+	Tab2/Atab2 family RNA-binding protein	NA	NA	NA	NA
WP_174710053.1\|3185152_3185383_+	CopG family transcriptional regulator	NA	NA	NA	NA
WP_174710054.1\|3185369_3185729_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA
WP_174710055.1\|3185948_3187148_-	DUF4159 domain-containing protein	NA	NA	NA	NA
WP_174710056.1\|3187395_3188424_-\|tail	phage tail protein	NA	NA	NA	NA
WP_174710057.1\|3188497_3190696_-\|plate	putative baseplate assembly protein	NA	NA	NA	NA
WP_174710058.1\|3190884_3191298_-	GPW/gp25 family protein	NA	NA	NA	NA
WP_174710059.1\|3191585_3192068_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_174710060.1\|3192200_3192698_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_174710061.1\|3192816_3194550_-	VgrG-related protein	NA	NA	NA	NA
WP_174710062.1\|3194630_3195188_-	hypothetical protein	NA	NA	NA	NA
WP_174710063.1\|3195226_3198769_-	hypothetical protein	A0A1L2BX61	Bacteriophage	2.3e-09	35.4
WP_174710064.1\|3198792_3199317_-\|tail	phage tail protein	NA	NA	NA	NA
WP_174710065.1\|3199316_3199556_-	hypothetical protein	NA	NA	NA	NA
WP_174713637.1\|3200015_3201455_+	DUF4157 domain-containing protein	NA	NA	NA	NA
WP_174713638.1\|3202880_3204599_+	DUF4157 domain-containing protein	NA	NA	NA	NA
WP_174710066.1\|3204954_3205599_-	FHA domain-containing protein	NA	NA	NA	NA
WP_174710067.1\|3205570_3207709_-	substrate-binding domain-containing protein	NA	NA	NA	NA
WP_174710068.1\|3207820_3208501_-	response regulator transcription factor	NA	NA	NA	NA
WP_174710069.1\|3208592_3209714_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
WP_174710070.1\|3210384_3211224_+	DUF4255 domain-containing protein	NA	NA	NA	NA
WP_174710071.1\|3211254_3212916_+\|tail	phage tail sheath family protein	H6WFT7	Cyanophage	1.5e-19	33.7
WP_012407860.1\|3213063_3213519_+\|tail	phage tail protein	NA	NA	NA	NA

DBSCAN-SWA_10

3667967 : 3725123

Bacillus_phage(37.5%)

tRNA,transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_174710440.1\|3667967_3670610_-\|tRNA	alanine--tRNA ligase	A0A2K9L3D8	Tupanvirus	2.8e-60	37.4
WP_174710441.1\|3671803_3672823_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.8e-18	34.5
WP_174710442.1\|3672842_3673520_-\|protease	ATP-dependent Zn protease	NA	NA	NA	NA
WP_174710443.1\|3673844_3675488_+	lipoxygenase	NA	NA	NA	NA
WP_174710444.1\|3675775_3676018_-	hypothetical protein	NA	NA	NA	NA
WP_174710445.1\|3676076_3677018_+	AAA family ATPase	NA	NA	NA	NA
WP_174710446.1\|3676992_3677196_+	ATP-binding protein	NA	NA	NA	NA
WP_174708167.1\|3678298_3679636_+\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_174710447.1\|3679632_3680661_+	DUF4435 domain-containing protein	NA	NA	NA	NA
WP_174710448.1\|3680717_3681572_-	formyltetrahydrofolate deformylase	M4QRX9	Synechococcus_phage	1.6e-12	37.1
WP_174710449.1\|3681596_3682220_-	DUF4340 domain-containing protein	NA	NA	NA	NA
WP_174710450.1\|3682302_3684039_-	Gldg family protein	NA	NA	NA	NA
WP_174710451.1\|3684053_3684866_-	ABC transporter permease subunit	NA	NA	NA	NA
WP_174710452.1\|3684866_3685877_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	5.6e-25	33.0
WP_174710453.1\|3686302_3687373_+	hypothetical protein	NA	NA	NA	NA
WP_174710454.1\|3687411_3688251_+	hypothetical protein	NA	NA	NA	NA
WP_174710455.1\|3688393_3690646_+	cadmium-translocating P-type ATPase	M1HXH2	Paramecium_bursaria_Chlorella_virus	9.6e-09	26.6
WP_163929371.1\|3690716_3691022_+	DUF5132 domain-containing protein	NA	NA	NA	NA
WP_174710456.1\|3691392_3691971_+	hypothetical protein	NA	NA	NA	NA
WP_174710457.1\|3691980_3694329_-	WD40 repeat domain-containing protein	NA	NA	NA	NA
WP_174710258.1\|3695709_3696018_-\|transposase	transposase	NA	NA	NA	NA
WP_174710458.1\|3697240_3698977_-	flavin reductase	NA	NA	NA	NA
WP_174710459.1\|3699119_3699632_-	phosphate-starvation-inducible PsiE family protein	NA	NA	NA	NA
WP_174710460.1\|3699738_3701469_-	flavin reductase	NA	NA	NA	NA
WP_174710461.1\|3701677_3702661_+	1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase	NA	NA	NA	NA
WP_174710462.1\|3702768_3703398_+	DUF262 domain-containing protein	NA	NA	NA	NA
WP_174708137.1\|3703357_3704380_-\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_174710463.1\|3704582_3705731_+	hypothetical protein	NA	NA	NA	NA
WP_174710464.1\|3705859_3706519_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_174710465.1\|3706922_3707183_-	hypothetical protein	NA	NA	NA	NA
WP_174713662.1\|3708290_3708587_+	AMP-binding protein	A0A2K9KZV5	Tupanvirus	3.2e-05	38.0
WP_174710466.1\|3708598_3709858_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
WP_174710467.1\|3709922_3710399_+	hypothetical protein	NA	NA	NA	NA
WP_174713663.1\|3710576_3711647_+	methyltransferase	NA	NA	NA	NA
WP_174710468.1\|3713456_3714596_+	3-oxoacyl-ACP synthase III family protein	NA	NA	NA	NA
WP_174710469.1\|3714731_3715319_+	hypothetical protein	NA	NA	NA	NA
WP_174710470.1\|3715589_3715997_+	hypothetical protein	NA	NA	NA	NA
WP_174710471.1\|3716282_3718013_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	7.3e-57	31.8
WP_174710472.1\|3718105_3719938_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.5e-55	31.3
WP_174710473.1\|3720003_3720750_-	YdcF family protein	NA	NA	NA	NA
WP_174710474.1\|3721061_3722402_+	S41 family peptidase	NA	NA	NA	NA
WP_174710475.1\|3722550_3723564_+	glycosyltransferase	NA	NA	NA	NA
WP_174709303.1\|3724229_3725123_+\|transposase	transposase family protein	NA	NA	NA	NA

DBSCAN-SWA_11

4511357 : 4578760

Vibrio_phage(16.67%)

transposase,integrase

attL 4549791:4549850|attR 4578698:4578788

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_174709027.1\|4511357_4512479_-\|transposase	IS630 family transposase	NA	NA	NA	NA
WP_174710970.1\|4512533_4513211_-	hypothetical protein	NA	NA	NA	NA
WP_174710971.1\|4513361_4513859_+	MAPEG family protein	NA	NA	NA	NA
WP_174710972.1\|4513898_4514615_+	DUF4336 domain-containing protein	NA	NA	NA	NA
WP_174710973.1\|4515043_4515826_-	hypothetical protein	NA	NA	NA	NA
WP_174710974.1\|4515865_4516348_-	NAD(P)-binding protein	NA	NA	NA	NA
WP_174710975.1\|4516802_4517126_+	hypothetical protein	NA	NA	NA	NA
WP_174710976.1\|4517422_4518217_-	methyltransferase domain-containing protein	NA	NA	NA	NA
WP_174713709.1\|4518350_4518539_-	hypothetical protein	NA	NA	NA	NA
WP_174710977.1\|4522087_4523002_-\|integrase	site-specific integrase	NA	NA	NA	NA
WP_174710978.1\|4523078_4523549_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_174710979.1\|4524003_4525185_+	hypothetical protein	NA	NA	NA	NA
WP_174710980.1\|4526708_4527497_+	tryptophan-rich sensory protein	NA	NA	NA	NA
WP_174710981.1\|4527616_4528423_+	aldo/keto reductase	NA	NA	NA	NA
WP_094344845.1\|4528632_4528863_+	hypothetical protein	NA	NA	NA	NA
WP_174710982.1\|4528885_4529818_-	ParB/RepB/Spo0J family partition protein	NA	NA	NA	NA
WP_174710983.1\|4529804_4530446_-	ParA family protein	K7R2R7	Vibrio_phage	3.0e-16	32.1
WP_174710984.1\|4530689_4531163_-	shikimate kinase	NA	NA	NA	NA
WP_174710985.1\|4531387_4532104_+	iron-containing redox enzyme family protein	NA	NA	NA	NA
WP_100904368.1\|4534747_4535269_-	HNH endonuclease	F5B475	Synechococcus_phage	2.1e-20	38.3
WP_174710986.1\|4535855_4536836_+	hypothetical protein	NA	NA	NA	NA
WP_174710987.1\|4536912_4537122_-	hypothetical protein	NA	NA	NA	NA
WP_174710988.1\|4537485_4537752_-	HNH endonuclease	NA	NA	NA	NA
WP_174710989.1\|4537833_4538067_-	hypothetical protein	NA	NA	NA	NA
WP_174710990.1\|4538093_4538936_-\|integrase	tyrosine-type recombinase/integrase	A0A0K2CP59	Brevibacillus_phage	8.8e-16	28.7
WP_174710991.1\|4539147_4539822_-	hypothetical protein	NA	NA	NA	NA
WP_174710992.1\|4539842_4540376_-	hypothetical protein	NA	NA	NA	NA
WP_174710993.1\|4540733_4541627_+	DNA/RNA non-specific endonuclease	NA	NA	NA	NA
WP_174710994.1\|4541647_4542055_-	nuclease	NA	NA	NA	NA
WP_174710995.1\|4542424_4542772_-	hypothetical protein	NA	NA	NA	NA
WP_174710996.1\|4542843_4543266_+	hypothetical protein	NA	NA	NA	NA
WP_174710997.1\|4543317_4543800_-	DUF4174 domain-containing protein	NA	NA	NA	NA
WP_174710998.1\|4543903_4544065_-	hypothetical protein	NA	NA	NA	NA
WP_174710999.1\|4544289_4545753_+	FAD-binding protein	NA	NA	NA	NA
WP_174711000.1\|4546145_4547165_-	S1/P1 nuclease	NA	NA	NA	NA
WP_174711001.1\|4547422_4548490_-	WD40 repeat domain-containing protein	NA	NA	NA	NA
WP_174711002.1\|4548650_4549717_-\|transposase	ISKra4 family transposase	NA	NA	NA	NA
4549791:4549850	attL	NA	NA	NA	NA
WP_174711003.1\|4550009_4551611_+	hypothetical protein	NA	NA	NA	NA
WP_174713710.1\|4554309_4556604_-	catalase/peroxidase HPI	NA	NA	NA	NA
WP_174711004.1\|4556991_4559238_-	ATP-dependent RecD-like DNA helicase	A0A1P8DII4	Virus_Rctr197k	2.0e-51	29.4
WP_174711005.1\|4559419_4560538_-	ParB N-terminal domain-containing protein	NA	NA	NA	NA
WP_114086238.1\|4560540_4561332_-	ParA family protein	NA	NA	NA	NA
WP_174711006.1\|4562046_4562565_+	hypothetical protein	NA	NA	NA	NA
WP_174711007.1\|4563139_4564099_+	ParM/StbA family protein	NA	NA	NA	NA
WP_174711008.1\|4564109_4564400_+	hypothetical protein	NA	NA	NA	NA
WP_174711009.1\|4564968_4566273_+	MFS transporter	NA	NA	NA	NA
WP_174711010.1\|4566826_4567288_+	alpha/beta fold hydrolase	NA	NA	NA	NA
WP_174711011.1\|4568874_4569303_+	hypothetical protein	NA	NA	NA	NA
WP_174711012.1\|4569299_4569707_-	hypothetical protein	NA	NA	NA	NA
WP_174711013.1\|4569889_4570165_-	HU family DNA-binding protein	A0A2H4PAM3	Aphanizomenon_phage	8.1e-19	55.6
WP_174711014.1\|4570969_4571530_-	hypothetical protein	NA	NA	NA	NA
WP_174711015.1\|4573129_4573444_-	hypothetical protein	NA	NA	NA	NA
WP_174711016.1\|4573501_4573705_-	hypothetical protein	NA	NA	NA	NA
WP_174711017.1\|4573746_4573968_-	hypothetical protein	NA	NA	NA	NA
WP_174711018.1\|4574482_4575376_-\|integrase	tyrosine-type recombinase/integrase	A0A160DFH7	Gordonia_phage	3.0e-06	26.3
WP_174713711.1\|4575462_4575930_+	zinc ribbon domain-containing protein	NA	NA	NA	NA
WP_174708235.1\|4577694_4578760_+\|transposase	ISKra4 family transposase	NA	NA	NA	NA
4578698:4578788	attR	NA	NA	NA	NA

DBSCAN-SWA_12

5237851 : 5311908

Organic_Lake_phycodnavirus(20.0%)

transposase,bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_174711480.1\|5237851_5239054_-\|transposase	transposase	A0A191SB13	Nostoc_phage	2.5e-181	77.7
WP_174711481.1\|5239166_5240396_+	tetratricopeptide repeat protein	NA	NA	NA	NA
WP_174711482.1\|5240472_5242062_+	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_174711483.1\|5242075_5242672_+	dephospho-CoA kinase	NA	NA	NA	NA
WP_174711484.1\|5243165_5243492_+	hypothetical protein	NA	NA	NA	NA
WP_174711485.1\|5243571_5244975_-	hypothetical protein	NA	NA	NA	NA
WP_174711486.1\|5245362_5246718_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA
WP_174708235.1\|5247352_5248418_+\|transposase	ISKra4 family transposase	NA	NA	NA	NA
WP_174711487.1\|5249015_5250785_+	asparagine synthase	F2Y2L7	Organic_Lake_phycodnavirus	1.8e-18	26.6
WP_174711488.1\|5251194_5251443_+	hypothetical protein	NA	NA	NA	NA
WP_174711489.1\|5251497_5252529_-	VOC family protein	NA	NA	NA	NA
WP_174711490.1\|5252718_5253342_+	DUF3859 domain-containing protein	NA	NA	NA	NA
WP_174711491.1\|5253347_5255174_+	asparagine synthase	R4TIC1	Phaeocystis_globosa_virus	1.5e-12	22.5
WP_174711492.1\|5255143_5256427_+	decarboxylase	NA	NA	NA	NA
WP_174711493.1\|5256501_5257803_+	hypothetical protein	NA	NA	NA	NA
WP_174711494.1\|5258128_5258662_+	MgtC/SapB family protein	G3MA03	Bacillus_virus	6.0e-10	35.3
WP_174711495.1\|5258875_5259370_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA
WP_174711496.1\|5259628_5260495_-	glutamate racemase	NA	NA	NA	NA
WP_174711497.1\|5260622_5262515_-	N-acetylmuramoyl-L-alanine amidase	E5DV68	Deep-sea_thermophilic_phage	3.7e-22	36.9
WP_174711498.1\|5263047_5264943_-	N-acetylmuramoyl-L-alanine amidase	A0A2H4JCM7	uncultured_Caudovirales_phage	4.3e-26	40.8
WP_174711499.1\|5265750_5267229_-	cation:proton antiporter	NA	NA	NA	NA
WP_174711500.1\|5267428_5267629_-	hypothetical protein	NA	NA	NA	NA
WP_174711501.1\|5267658_5268399_+	SIMPL domain-containing protein	NA	NA	NA	NA
WP_174711502.1\|5268532_5268895_-	single-stranded DNA-binding protein	A0A291LA01	Bordetella_phage	5.3e-18	37.9
WP_094330992.1\|5269258_5270266_+	rod shape-determining protein	F2Y0P3	Organic_Lake_phycodnavirus	8.1e-08	24.2
WP_174711503.1\|5270365_5271175_+	rod shape-determining protein MreC	NA	NA	NA	NA
WP_174711504.1\|5271201_5271837_+	rod shape-determining protein MreD	NA	NA	NA	NA
WP_174711505.1\|5272551_5272749_-	hypothetical protein	NA	NA	NA	NA
WP_174711506.1\|5273697_5274669_+	solanesyl diphosphate synthase	NA	NA	NA	NA
WP_174711507.1\|5274960_5275434_-	hypothetical protein	NA	NA	NA	NA
WP_012408510.1\|5275638_5276844_+	heterocyst differentiation protein HetZ	NA	NA	NA	NA
WP_174711508.1\|5276836_5277814_+	PatU	NA	NA	NA	NA
WP_174713745.1\|5278373_5280677_+	DUF3488 domain-containing protein	NA	NA	NA	NA
WP_174711509.1\|5280833_5281310_-	hypothetical protein	NA	NA	NA	NA
WP_174711510.1\|5281395_5282670_-	proton extrusion protein PcxA	NA	NA	NA	NA
WP_174711511.1\|5284769_5284859_+	hypothetical protein	NA	NA	NA	NA
WP_174711512.1\|5285415_5289312_+	serine/threonine-protein kinase PknK	A0A1V0SGY7	Hokovirus	1.8e-15	29.2
WP_174708167.1\|5290388_5291726_+\|transposase	IS701 family transposase	NA	NA	NA	NA
WP_174711513.1\|5291759_5293334_+	GAF domain-containing sensor histidine kinase	NA	NA	NA	NA
WP_174711514.1\|5294579_5295302_-	carbonic anhydrase	NA	NA	NA	NA
WP_174708235.1\|5295534_5296600_+\|transposase	ISKra4 family transposase	NA	NA	NA	NA
WP_174711515.1\|5297038_5299846_+	TIR domain-containing protein	NA	NA	NA	NA
WP_174711516.1\|5299979_5302718_+	peptidoglycan-binding protein	A0A1V0SLQ7	Klosneuvirus	3.0e-28	33.5
WP_174711517.1\|5302735_5303530_-	MinD/ParA family protein	NA	NA	NA	NA
WP_174711518.1\|5303573_5304635_-	DUF3365 domain-containing protein	NA	NA	NA	NA
WP_174711519.1\|5305070_5305310_+	hypothetical protein	NA	NA	NA	NA
WP_174711520.1\|5305390_5305630_+	hypothetical protein	NA	NA	NA	NA
WP_174711521.1\|5305710_5305950_+	hypothetical protein	NA	NA	NA	NA
WP_174711520.1\|5306030_5306270_+	hypothetical protein	NA	NA	NA	NA
WP_174711520.1\|5306350_5306590_+	hypothetical protein	NA	NA	NA	NA
WP_174711521.1\|5306670_5306910_+	hypothetical protein	NA	NA	NA	NA
WP_174711522.1\|5306990_5307230_+	hypothetical protein	NA	NA	NA	NA
WP_174711523.1\|5307317_5307560_+	hypothetical protein	NA	NA	NA	NA
WP_174711524.1\|5307624_5307882_+	hypothetical protein	NA	NA	NA	NA
WP_174711525.1\|5307911_5308151_+	hypothetical protein	NA	NA	NA	NA
WP_174711526.1\|5308147_5308573_+	hypothetical protein	NA	NA	NA	NA
WP_174711527.1\|5308717_5308945_+\|bacteriocin	bacteriocin	NA	NA	NA	NA
WP_174711528.1\|5309133_5310231_+	cyclic nucleotide-binding domain-containing protein	NA	NA	NA	NA
WP_174711529.1\|5310465_5311908_+\|bacteriocin	NHLP bacteriocin system secretion protein	NA	NA	NA	NA

DBSCAN-SWA_13

7128829 : 7166136

Bodo_saltans_virus(25.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_174712741.1\|7128829_7129789_+\|transposase	IS630 family transposase	A0A2H4UV16	Bodo_saltans_virus	2.0e-16	27.3
WP_174712742.1\|7129820_7130648_+	hypothetical protein	NA	NA	NA	NA
WP_174712743.1\|7130881_7132084_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_174712744.1\|7132379_7132991_-	hypothetical protein	NA	NA	NA	NA
WP_163935789.1\|7133208_7133640_+	biotin carboxylase	NA	NA	NA	NA
WP_174712745.1\|7134819_7135425_-	hypothetical protein	NA	NA	NA	NA
WP_174712746.1\|7135470_7136496_-	glucokinase	NA	NA	NA	NA
WP_174712747.1\|7136580_7137228_-	histidine phosphatase family protein	NA	NA	NA	NA
WP_174712748.1\|7137508_7137742_-	DUF1493 family protein	NA	NA	NA	NA
WP_174712749.1\|7137771_7138335_-	Uma2 family endonuclease	NA	NA	NA	NA
WP_174712750.1\|7138368_7139100_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.0e-15	29.1
WP_174712751.1\|7139277_7140117_+\|transposase	Rpn family recombination-promoting nuclease/putative transposase	NA	NA	NA	NA
WP_174708067.1\|7140984_7141799_-\|transposase	IS5 family transposase	NA	NA	NA	NA
WP_174712752.1\|7141978_7142749_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	2.7e-19	28.2
WP_174712753.1\|7142796_7143759_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_174712754.1\|7143774_7144377_-	Uma2 family endonuclease	NA	NA	NA	NA
WP_174712755.1\|7144391_7145342_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
WP_174712756.1\|7145349_7146594_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_012411375.1\|7146820_7147147_-	hypothetical protein	NA	NA	NA	NA
WP_174712757.1\|7147373_7147880_-	hypothetical protein	NA	NA	NA	NA
WP_174712758.1\|7148151_7148613_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_174712759.1\|7148764_7149805_-	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
WP_174712760.1\|7150603_7150858_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_174712761.1\|7150859_7154597_+	PAS domain S-box protein	W8CYF6	Bacillus_phage	4.3e-22	30.0
WP_174712762.1\|7154900_7156112_-	aspartate aminotransferase	NA	NA	NA	NA
WP_174712763.1\|7156108_7157299_-	iron-containing alcohol dehydrogenase family protein	NA	NA	NA	NA
WP_174712764.1\|7157962_7158484_-	DUF2518 family protein	NA	NA	NA	NA
WP_174712765.1\|7158887_7159097_+	hypothetical protein	NA	NA	NA	NA
WP_174712766.1\|7159459_7160788_-	O-antigen ligase family protein	NA	NA	NA	NA
WP_114082369.1\|7160769_7161612_-	hypothetical protein	NA	NA	NA	NA
WP_174712767.1\|7161906_7162971_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
WP_174712768.1\|7163502_7163880_+	hypothetical protein	NA	NA	NA	NA
WP_174713829.1\|7163972_7164449_-\|transposase	transposase	NA	NA	NA	NA
WP_174708235.1\|7164475_7165542_-\|transposase	ISKra4 family transposase	NA	NA	NA	NA
WP_174712769.1\|7165656_7166136_-\|transposase	transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: NZ_CP040094.1|WP_174711511.1|5284769_5284859_+|hypothetical-protein

Click the colored protein region to show detailed information

Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP040094.1|WP_174711511.1|5284769_5284859_+|hypothetical-protein

5284769_5284859_+

29 aa aa

5237851-5311908

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP040094_11	Orphan	11.2\|2220016\|17\|NZ_CP040094\|CRISPRCasFinder	2220016-2220032	17	5310373-5310357	0

1. spacer 11.2|2220016|17|NZ_CP040094|CRISPRCasFinder matches to NZ_CP040094 position: 5310373-5310357, mismatch: 0

actggggactggggact	CRISPR spacer
actggggactggggact	Protospacer
*****************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP040094

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection