CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP040109	Escherichia coli O157:H7 strain MB9-1 plasmid pMB9_2, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP040108	Escherichia coli O157:H7 strain MB9-1 plasmid pMB9_1, complete sequence	0 crisprs	NA	0	0	0	0
NZ_CP040107	Escherichia coli O157:H7 strain MB9-1 chromosome	8 crisprs	csa3,PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,c2c9_V-U4,DEDDh,DinG,PrimPol	1	10	18	1
NZ_CP040110	Escherichia coli O157:H7 strain MB9-1 plasmid pMB9_3, complete sequence	0 crisprs	NA	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP040107_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040107_1

1094283-1094371

Unclear

I-E

Consensus_repeat	Method
GAGTTCCCCGCGCCAGCGGGGATAAACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040107_1

>merge|NZ_CP040107|1|1094283-1094371|CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACCGCAAAAGCGGGCAGCGAAAAAATTAAAGTCGAGGAGTTCCCCGCGCCAGTGGGGATAAACC

>NZ_CP040107|1|1|1094283-1094371|CRISPRCasFinder
GAGTTCCCCGCGCCAGCGGGGATAAACC	GCAAAAGCGGGCAGCGAAAAAATTAAAGTCGAG
GAGTTCCCCGCGCCAGTGGGGATAAACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040107.1\|WP_001509307.1\|1101762_1102542_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
NZ_CP040107.1\|WP_000210878.1\|1086432_1088070_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
NZ_CP040107.1\|WP_001199973.1\|1093271_1093943_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
NZ_CP040107.1\|WP_001164582.1\|1096449_1097727_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
NZ_CP040107.1\|WP_001243487.1\|1091808_1092483_-\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429
NZ_CP040107.1\|WP_000036723.1\|1088157_1089456_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
NZ_CP040107.1\|WP_001301471.1\|1104389_1105661_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182194
NZ_CP040107.1\|WP_012779383.1\|1089515_1090430_-\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429
NZ_CP040107.1\|WP_000109503.1\|1104138_1104399_-\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|225289
NZ_CP040107.1\|WP_001071672.1\|1085413_1086205_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
NZ_CP040107.1\|WP_001217990.1\|1090426_1091575_-\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429
NZ_CP040107.1\|WP_000039701.1\|1094944_1096423_-\|sugar-kinase	unknown	unknown	gnl\|CDD\|212662
NZ_CP040107.1\|WP_000059304.1\|1098900_1100355_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
NZ_CP040107.1\|WP_000021347.1\|1098045_1098831_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187605
NZ_CP040107.1\|WP_000254738.1\|1085007_1085343_+\|endoribonuclease-MazF	unknown	unknown	gnl\|CDD\|182138
NZ_CP040107.1\|WP_000211937.1\|1106419_1108219_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
NZ_CP040107.1\|WP_001130278.1\|1103546_1104122_-\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865
NZ_CP040107.1\|WP_000108294.1\|1105738_1106101_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
NZ_CP040107.1\|WP_000581937.1\|1084759_1085008_+\|type-II-toxin-antitoxin-system-antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
NZ_CP040107.1\|WP_042909427.1\|1092496_1093117_-\|LemA-family-protein	unknown	unknown	gnl\|CDD\|224618

Protein	Function_ID	Function_description	E-value
NZ_CP040107.1\|WP_001509307.1\|1101762_1102542_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	2.58286e-65
NZ_CP040107.1\|WP_000210878.1\|1086432_1088070_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
NZ_CP040107.1\|WP_001199973.1\|1093271_1093943_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.98248e-155
NZ_CP040107.1\|WP_001164582.1\|1096449_1097727_-\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	7.69151e-30
NZ_CP040107.1\|WP_001243487.1\|1091808_1092483_-\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	3.44494e-83
NZ_CP040107.1\|WP_000036723.1\|1088157_1089456_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
NZ_CP040107.1\|WP_001301471.1\|1104389_1105661_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	4.44674e-126
NZ_CP040107.1\|WP_012779383.1\|1089515_1090430_-\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	1.30872e-104
NZ_CP040107.1\|WP_000109503.1\|1104138_1104399_-\|ferredoxin-family-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	1.18571e-41
NZ_CP040107.1\|WP_001071672.1\|1085413_1086205_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	1.24402e-159
NZ_CP040107.1\|WP_001217990.1\|1090426_1091575_-\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	5.38776e-66
NZ_CP040107.1\|WP_000039701.1\|1094944_1096423_-\|sugar-kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	1.25899e-108
NZ_CP040107.1\|WP_000059304.1\|1098900_1100355_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	4.96301e-83
NZ_CP040107.1\|WP_000021347.1\|1098045_1098831_+\|SDR-family-oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	2.24046e-138
NZ_CP040107.1\|WP_000254738.1\|1085007_1085343_+\|endoribonuclease-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	1.17475e-74
NZ_CP040107.1\|WP_000211937.1\|1106419_1108219_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
NZ_CP040107.1\|WP_001130278.1\|1103546_1104122_-\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	1.96043e-88
NZ_CP040107.1\|WP_000108294.1\|1105738_1106101_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	1.01593e-59
NZ_CP040107.1\|WP_000581937.1\|1084759_1085008_+\|type-II-toxin-antitoxin-system-antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48
NZ_CP040107.1\|WP_042909427.1\|1092496_1093117_-\|LemA-family-protein	gnl\|CDD\|224618	COG1704, LemA, Uncharacterized conserved protein [Function unknown].	2.13345e-77

>NZ_CP040107.1|WP_001199973.1|1093271_1093943_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>NZ_CP040107.1|WP_042909427.1|1092496_1093117_-|LemA-family-protein
MKRDLNTLRIFIVIIFIFNLSGCGYNDIQTYDEQVNASWSEVLNQYQRRADLIPNLVASIKGYSSHERDVLEAVTLARSQANRASSDLQQTPGDEQKLQAWQQAQAQVTRTLGQLTIISERYPELKSQELYQNLMVQLEGSENRIAVARGRYIKAIEQYNVTIRKFPAVLTAKVMDYTPKKNYLPDDVAAVSKAPTIDFSQNANAH
>NZ_CP040107.1|WP_001243487.1|1091808_1092483_-|YgcG-family-protein
MRNFIFLMAFFCSSVFATQIPVPESPKYVNDLTGTLTNSEVNTLTNQIKALTQKNYAQLVVLVVETTGDETIEQYATRVFDSWKPGDKDRDDGVLLLVAWQDHTVRIEIGYGLEGIITDAQSGKIIRNSIIPAFKKGDLAGGLQKGISDIESRLTGNNLATITPTDHPLPFSGWWALLVWAIVLTFISARGYIKTLGVICFAAIVLAFVLPIAGFSGSWGVLAT
>NZ_CP040107.1|WP_001217990.1|1090426_1091575_-|YgcG-family-protein
MRIFLLLLMLCGFQVFAERLPSVTDLTGTLTTEEQTALTQQLQTLEQQNHFQVAVLVTPTTGGKNIKLAASQRYGVYHWKPVGEKRYGEGILILVVWPEGLASMKIGHGLEEMLPPEQAAQIVRYHMQPEFEKNNLFAGLTGGIESIAQFTHIKANLSPLDALANHLFANPQRSLPCLAWTLLMIVAIVVLWLFASRPRRGIWMISMITPMVWFFSFQDDVIIRRVSVVCFSLLLATTCKQRLAVVFNMCRVFPMMLTPKNKNAKVKKQKKTPQVRESGRNSLFVVMLIIIVGWCLVFASNKDIAFISTIIGLIDHFIGPITIAGIVLLIIVAKFTGNLKLGSGEKSNRKTGNRNAHSRSSSRNSFRGGGGSSGGGGSSVRW
>NZ_CP040107.1|WP_012779383.1|1089515_1090430_-|YgcG-family-protein
MIVMRLIFILFTLWCLPGLAQQIAVPELRQQVTDITGTLSTSEQQSLTQQLQDITHKTRAQVAVLVVPSTGDDSIEQYATRVFDSWKLGDKQRNDGILLLVAWEDHAVRIEVGYGLEGVVTDLQAAKIIRDILIPAFKSDDLMGGLTLASENIGALLLNGELPEDRGDYYSINPPIPLSLAVIILLAVLSYFIVFTDPSNLPWITLTGAIYGMVFLYVAEPGPWTNLIVACGMLTPFAIVPLVIFWLIVNKKLRAKYKKLSKDRASRKGSSSSSSGGGSSGGGSGGGFSGGGGSSGGGGASGRW
>NZ_CP040107.1|WP_000036723.1|1088157_1089456_+|phosphopyruvate-hydratase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>NZ_CP040107.1|WP_000210878.1|1086432_1088070_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>NZ_CP040107.1|WP_001071672.1|1085413_1086205_+|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATITPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEARQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>NZ_CP040107.1|WP_000254738.1|1085007_1085343_+|endoribonuclease-MazF
MVSRYVPDMGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>NZ_CP040107.1|WP_000581937.1|1084759_1085008_+|type-II-toxin-antitoxin-system-antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>NZ_CP040107.1|WP_000039701.1|1094944_1096423_-|sugar-kinase
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKSWAWSEDAAVMEKFNIPRHMLFDVQMPGTVLGQITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDARAQDLSPEDLLNKKASCVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDKMVRVKDIFIPIESNAKRYDAMNKGIFKALTKHTDVILKKSYEVMHGELGNADSIQSWSNA
>NZ_CP040107.1|WP_001164582.1|1096449_1097727_-|MFS-transporter
MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSTSLKTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSVLGLLALTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGHWQDTQPAAEAYRNMWLMGMAALAMVIVFTFLLFQKIRTADSAPAMASSK
>NZ_CP040107.1|WP_000021347.1|1098045_1098831_+|SDR-family-oxidoreductase
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANVFIPSFVKDNGETKEMIENQGVEVDFMQVDITAEGAPQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASQASNYVNGHLLVVDGGYLVR
>NZ_CP040107.1|WP_000059304.1|1098900_1100355_+|FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREIMVEGYRPSIARLYDAEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIETWFNNLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVNCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWALLEGLKKQFDPNGIMNTGTIYPIEK
>NZ_CP040107.1|WP_001509307.1|1101762_1102542_+|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNILLAFKAEPDAGMLAEKEWQAAAHGNSGPDISLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGNERALHWLRYLMALGFEEAVLLETAADLRFASEFVARHIAEWQRQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDAPFITLEQRTEHGLRCCRIRLPAVIAVRQCGEVALPVPGMRQRMAAGKAEIIRKTVAAELPAMQCLQLARAEQRRGATLIDGQTVAEKAQKLWQDYLRQRMQP
>NZ_CP040107.1|WP_001130278.1|1103546_1104122_-|glycerol-3-phosphate-responsive-antiterminator
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISQIVKKIKNAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>NZ_CP040107.1|WP_000109503.1|1104138_1104399_-|ferredoxin-family-protein
MSVARNLWRAADAPHIVPADSVERQMVQRLINACPVGLFSLTPEGDLRVDYHGCLECGTCRLLCDESTLQQWRYPPSGFGITYRFG
>NZ_CP040107.1|WP_001301471.1|1104389_1105661_-|FAD-dependent-oxidoreductase
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTHALAELLPQFHLTAPLERRITHESLSLLTPDCATTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRARYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGGICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLARFKTHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLVGDALRSCVNTGISVRGMDTALTGAQAAAQTLISACQHREPQNLFPLYHHNVERSLLWDVLQRYQHVPVLLQRPGWYRTWPALMQDISRDLWDQGDKPVPPLRQLLWRHLRRHGLWNLAGDVIRSVRCL
>NZ_CP040107.1|WP_000108294.1|1105738_1106101_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLFKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIIDFAELKAAFKPTYERLDHHYLNDIPGLENPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCIYRGE
>NZ_CP040107.1|WP_000211937.1|1106419_1108219_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTQVPPSALLPLNPEQLARLQAATTDLTPTQLAWVSGYFWGVLNQQPAALAATPAPAAEMPGITIISASQTGNARRVAEALRDDLLTAKLNVKLVNAGDYKFKQIASEKLLIVVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDSSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDALKSRAPVAAPSQSVATGVVNEIHTSPYSKDAPLVASLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVEGKTLPLNEALQWHFELTVNTANIVENYATLTRSETLLPLVGDKAKLQHYAATTPIVDMVRFSPAQLDAEALINLLRPLTPRLYSIASSQEEVENEVHVTVGVVRYDVEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRAFMQQRAADEAPGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLTRIDLAWSRDQKEKVYVQDKLREQGAELWRWINDGAHIYVCGDANRMAKDVEQALLEVIAEFGGMDTEAADEFLSELRVERRYQRDVY

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Crispr_ID: NZ_CP040107_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040107_2

1120001-1120213

TypeI-E

I-E

Consensus_repeat	Method
TGTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
TGTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder

3 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of NZ_CP040107_2

>merge|NZ_CP040107|2|1120001-1120213|PILER-CR,CRT,CRISPRCasFinder
TGTGTTCCCCGCGCCAGCGGGGATAAACCGTCACCAAAACAGTGACAAAAACTGTCACCAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCTCATATTCGGATTGATCGTGTGTTTCGGTTTGTGTTCCCCGCGCCAGCGGGGATAAACCGGCCCAGGGATTTGTTCAATCCAGCGTGCCGCTGTGTTCCCCGCATCAGCGGGGATAAACCG

>NZ_CP040107|2|1|1120001-1120152|PILER-CR
TGTGTTCCCCGCGCCAGCGGGGATAAACCG	TCACCAAAACAGTGACAAAAACTGTCACCAA
AGTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCATATTCGGATTGATCGTGTGTTTCGGTT
TGTGTTCCCCGCGCCAGCGGGGATAAACCG

>NZ_CP040107|2|1|1120001-1120213|CRT
TGTGTTCCCCGCGCCAGCGGGGATAAACCG	TCACCAAAACAGTGACAAAAACTGTCACCAA
AGTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCATATTCGGATTGATCGTGTGTTTCGGTT
TGTGTTCCCCGCGCCAGCGGGGATAAACCG	GCCCAGGGATTTGTTCAATCCAGCGTGCCGC
TGTGTTCCCCGCATCAGCGGGGATAAACCG

>NZ_CP040107|2|2|1120002-1120213|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCACCAAAACAGTGACAAAAACTGTCACCAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCATATTCGGATTGATCGTGTGTTTCGGTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCCCAGGGATTTGTTCAATCCAGCGTGCCGCT
GTGTTCCCCGCATCAGCGGGGATAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040107.1\|WP_001090366.1\|1122493_1123921_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
NZ_CP040107.1\|WP_001295182.1\|1127638_1128400_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
NZ_CP040107.1\|WP_000039864.1\|1110004_1110739_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
NZ_CP040107.1\|WP_000206445.1\|1116250_1117306_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
NZ_CP040107.1\|WP_000490413.1\|1120294_1121332_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	unknown	unknown	gnl\|CDD\|182299
NZ_CP040107.1\|WP_000063176.1\|1119611_1119905_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
NZ_CP040107.1\|WP_000517476.1\|1125092_1125404_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
NZ_CP040107.1\|WP_001233978.1\|1111346_1114046_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
NZ_CP040107.1\|WP_000568934.1\|1126608_1127658_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
NZ_CP040107.1\|WP_000246158.1\|1125422_1126133_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
NZ_CP040107.1\|WP_000956458.1\|1111002_1111155_+\|type-I-toxin-antitoxin-system-Hok-family-toxin	unknown	unknown	gnl\|CDD\|366840
NZ_CP040107.1\|WP_000144847.1\|1118691_1119615_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
NZ_CP040107.1\|WP_001246103.1\|1124575_1124899_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
NZ_CP040107.1\|WP_000029325.1\|1115702_1116239_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
NZ_CP040107.1\|WP_001173673.1\|1123920_1124526_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
NZ_CP040107.1\|WP_001084082.1\|1114143_1115706_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
NZ_CP040107.1\|WP_001219242.1\|1126132_1126612_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
NZ_CP040107.1\|WP_000085058.1\|1117316_1118063_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
NZ_CP040107.1\|WP_000372111.1\|1121583_1122492_+\|sulfate-adenylyltransferase-subunit-CysD	unknown	unknown	gnl\|CDD\|235375
NZ_CP040107.1\|WP_000281463.1\|1118044_1118695_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869

Protein	Function_ID	Function_description	E-value
NZ_CP040107.1\|WP_001090366.1\|1122493_1123921_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
NZ_CP040107.1\|WP_001295182.1\|1127638_1128400_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
NZ_CP040107.1\|WP_000039864.1\|1110004_1110739_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	5.85899e-137
NZ_CP040107.1\|WP_000206445.1\|1116250_1117306_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.45802e-155
NZ_CP040107.1\|WP_000490413.1\|1120294_1121332_-\|alkaline-phosphatase-isozyme-conversion-aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
NZ_CP040107.1\|WP_000063176.1\|1119611_1119905_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	2.35543e-65
NZ_CP040107.1\|WP_000517476.1\|1125092_1125404_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
NZ_CP040107.1\|WP_001233978.1\|1111346_1114046_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
NZ_CP040107.1\|WP_000568934.1\|1126608_1127658_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
NZ_CP040107.1\|WP_000246158.1\|1125422_1126133_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	6.38982e-120
NZ_CP040107.1\|WP_000956458.1\|1111002_1111155_+\|type-I-toxin-antitoxin-system-Hok-family-toxin	gnl\|CDD\|366840	pfam01848, HOK_GEF, Hok/gef family.	8.32243e-12
NZ_CP040107.1\|WP_000144847.1\|1118691_1119615_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	7.06391e-157
NZ_CP040107.1\|WP_001246103.1\|1124575_1124899_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	3.44794e-52
NZ_CP040107.1\|WP_000029325.1\|1115702_1116239_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	3.2742e-30
NZ_CP040107.1\|WP_001173673.1\|1123920_1124526_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148
NZ_CP040107.1\|WP_001084082.1\|1114143_1115706_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
NZ_CP040107.1\|WP_001219242.1\|1126132_1126612_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.56248e-104
NZ_CP040107.1\|WP_000085058.1\|1117316_1118063_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	7.00414e-48
NZ_CP040107.1\|WP_000372111.1\|1121583_1122492_+\|sulfate-adenylyltransferase-subunit-CysD	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
NZ_CP040107.1\|WP_000281463.1\|1118044_1118695_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	5.5854e-93

>NZ_CP040107.1|WP_000063176.1|1119611_1119905_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAIWLLEVRAGVYVGDTSKRIREMIWQQITQLAGCGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVDNQ
>NZ_CP040107.1|WP_000144847.1|1118691_1119615_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLSPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVHLAATVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALTEDLRLKVVRKMYELRFREPPPARRSVDQLRGIEGSRVRQTYALLAKQYGVKWNGRKYDPKDWEKGDVVNRCISAATSCLYGISEAAVLAAGYAPAIGFIHSGKPLSFVYDIADIIKFDSVVPKAFEIAARQPAEPDKEVRLACRDIFRSTKLTGKLIPLIEKVLAAGEIEPPQPAPDMLPPAIPEPETLGDSGHRGRGG
>NZ_CP040107.1|WP_000281463.1|1118044_1118695_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTGQLSPAQLLHLVDRGEYVMHQWLWDLFPGGKERQFLYRREELQGAFRFFVLSQERPAESETFTIECRSFVPELRTGQQLCFNLRANPTICKAGKRHDLLMEAKRQVRGQAEGSDVWLHQQQAALDWLAAQGERSGFTLLDTSVDAYRQQQLRRENSRQLIQFSSVDYTGMLTVTDPGLFLQRLSQGYGKSRAFGCGLMLIKPGAEV
>NZ_CP040107.1|WP_000085058.1|1117316_1118063_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLIFQLHGPMASWGVDAPGEVRHTHELPSRSALLGLLAAGVGIRRDDTERLNAFNRHYSLVVCASRNPRWARDYHTVQMPKEVRKARYFSRREELSAPDLLSAIISRRDYYTDAWWMVAVATTPDAPYSLEQLQDGLRHPVFPLYLGRKSHPLALPLAPLLLEGNASDVLRNAYQQYQDSFRELKVSLPKLQDECWWEGEHDGLVASKILRRRDVPLNRQQWLFGERTINQGPWLSKEEPCTSQE
>NZ_CP040107.1|WP_000206445.1|1116250_1117306_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRVSSQSLKRAWRTSALFEQALAGHIGIRSGRIAREAATILIEKGIEEKKAIEWAAKIADYLGKAKNDKKPKDPLTNAETEQLVHISPAEFDAVKALAHQLAEEKRAPKEEDLALLRKDRMAVDIAMFGRMLANKPEFNVEAACQVAHAFGVSETIVEDDFFTAVDDLRQASEDAGAGHLGETGFGSALFYTYICIDKDLLVENLGGDEALANQTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTEQPRSLAAAFYEPINGTRQLDVAVQRITTLRENMNTVYEQKTECASFDVMNKQGSMKDVLDFICA
>NZ_CP040107.1|WP_000029325.1|1115702_1116239_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSIVKEEHKATLRKWHEELQEKRGERASLRRSTTVNDVCLTDGFRLFLKNRQIKWQDEPEWRITALALIAALSANVKAIDERLPFAAQLAAVMSKGRFTRLSAVKTPDELLRQLRRVVRLLNGSVNLDSLAEGVFRWCQESDDLLNHHRRHQRPTEFIRIRWALEYYQAGDVDNEQNQ
>NZ_CP040107.1|WP_001084082.1|1114143_1115706_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNSFSLLTTPWLPVRFKDGTTGKLAPVDLADENVVDIAAPRADLQGAAWQFLLGLLQSSFAPKDYRRWDDIWEDGLEAEKLREALLSLEHPFQFGPDSPSFMQDFEVLMGDKVQVASLLPEIPGAQTTKFNKDHFIKRGVTEHVCSHCSALALFSLQLNAPSGGKGYRTGLRGGGPMTTLIELQEYQGNQQAPLWRKLWLNVMPQDEADLPLPKKFDDLVFPWLGPTRTSELAGAVVTDDQVNKLQAYWGMPRRIRIDFNTTTVGNCDICGEQSDALLSLMTTKNYGANYAMWQHPLTPYRVPLKEGGEFYSVKPQPGGLIWRDWLGLIETGKSENNTELPALVVKLFNASSLKQAKVGLWGFGYDFDNMKARCWYEHHFPLLLNKKEGQIPKLRLAAQTASRILSLLRSALKEAWFSDPKGARGDFSFVDIDFWNKTQHRFLRLVRQIEEGQDADELLGKWQKEIWLFARQDFDERVFTNPYEPVDLERVMTARKKYFTTSAEKQSAKAAREKKQEAAE
>NZ_CP040107.1|WP_001233978.1|1111346_1114046_+|CRISPR-associated-helicase/endonuclease-Cas3
MRKYPLSLLKDKNIVTFFDFWGKTRRGEKEGGDGYHLLCWHSLDVAAMGYLMVKRNCFGLADYFRQLGISDKEQAAQFFAWLLCWHDIGKFARSFQQLYLAPELKIPEGSRKNYEKISHSTLGYWLWNYYLSECEELLPSSSLSSRKLTRVIEMWMSITTGHHGRPPDRIDELDNFLPEDKAAARDFLLEIKALFPLIEIPTFWDDDEGVELLKQLSWYISATVVLADWTGSSTRFFPRVAHPMDIKDYWQKTLVQAQNALTVFPPKAETAPFTGINTLFPFIEHPTPLQQKVLDLDISQPGPQLFILEDVTGAGKTEAALILAHRLMAARKAQGLFFGLPTMATANAMYDRLVKTWLAFYSPESRPSLVLAHSARTLMDRFNESLWSGDLVGSEEPDEQTFSQGCAAWFANSNKKALLAEIGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAYMSCILEGLIERQARGGNSVILLSATLSQQQRDKLVAAFARGTEGQQEAPFLEKDDYPWLTHVTKSDVNSHRVATRKDVERSVSVGWLHSEQESIARIESAVSQGKCIAWIRNSVDDAIKVHRQLLARGVIPASSLSLFHSRFAFSDRQRIEMETLARFGKEDGSQRAGKVLICTQVLEQSVDCDLDEMISDLAPVDLLIQRAGRLQRHIRDINGQLKRDGKDERSPPELLILAPVWDDAPGDEWFGSAMRNSAYVYPDHGRIWLTQRVLREQGAIQMPHAARLLIESVYGEDVVMPEGFARSEQEQVGKYYCDRAMAKKFVLNFKPGYAANINDYLPEKLSTRLAEESVSLWLATCIAGVVKPYATGAHAWEMSVVRVRRSWWKKHRDEFSLLEGEAFRQWCIEQRQDPEMANVILVTDDESCGYSAREGLIGKVD
>NZ_CP040107.1|WP_000956458.1|1111002_1111155_+|type-I-toxin-antitoxin-system-Hok-family-toxin
MLTKYALVAIIVLCCTVLGFTLMVGDSLCELSIRERGMEFKAVLAYESKK
>NZ_CP040107.1|WP_000039864.1|1110004_1110739_+|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAQLEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKNGLKYHPLWDEGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>NZ_CP040107.1|WP_000490413.1|1120294_1121332_-|alkaline-phosphatase-isozyme-conversion-aminopeptidase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKNWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPQSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEIFDKAGIAVLSVEATNWNLGNKDGYQQRAKTAAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIMLPLVKELAKAS
>NZ_CP040107.1|WP_000372111.1|1121583_1122492_+|sulfate-adenylyltransferase-subunit-CysD
MDQIRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHQNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>NZ_CP040107.1|WP_001090366.1|1122493_1123921_+|sulfate-adenylyltransferase-subunit-CysN
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEETFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRSRVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLIFIDRLSNVTVGAGMVHEPVSQATAAPSEFSAFELELNALVRRHFPHWGARDLLGEK
>NZ_CP040107.1|WP_001173673.1|1123920_1124526_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>NZ_CP040107.1|WP_001246103.1|1124575_1124899_+|DUF3561-family-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLMTVGIMFGALFMWLLG
>NZ_CP040107.1|WP_000517476.1|1125092_1125404_+|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>NZ_CP040107.1|WP_000246158.1|1125422_1126133_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVYALLAHPRVKRVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGAAITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>NZ_CP040107.1|WP_001219242.1|1126132_1126612_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>NZ_CP040107.1|WP_000568934.1|1126608_1127658_+|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGALRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELVELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>NZ_CP040107.1|WP_001295182.1|1127638_1128400_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW

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Crispr_ID: NZ_CP040107_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040107_3

1644382-1644487

Orphan

Consensus_repeat	Method
CCGAGCCGTAGGCCGGATTAGGCGTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040107_3

>merge|NZ_CP040107|3|1644382-1644487|CRISPRCasFinder
CCGAGCCGTAGGCCGGATTAGGCGTTCACGCCGCATCCTGTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAACCGAGCCGTAGGCCGGATAAGGCGTT

>NZ_CP040107|3|3|1644382-1644487|CRISPRCasFinder
CCGAGCCGTAGGCCGGATTAGGCGTT	CACGCCGCATCCTGTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACAAA
CCGAGCCGTAGGCCGGATAAGGCGTT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040107.1\|WP_000176738.1\|1639895_1640774_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176102
NZ_CP040107.1\|WP_000301028.1\|1642196_1642847_+\|lipopolysaccharide-kinase-InaA	unknown	unknown	gnl\|CDD\|182136
NZ_CP040107.1\|WP_000332037.1\|1643154_1644285_-\|ribonucleotide-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|181647
NZ_CP040107.1\|WP_001225855.1\|1663530_1664307_+\|YfaP-family-protein	unknown	unknown	gnl\|CDD\|227021
NZ_CP040107.1\|WP_021502145.1\|1657481_1661876_+\|alpha-2-macroglobulin-family-protein	unknown	unknown	gnl\|CDD\|225248
NZ_CP040107.1\|WP_000948724.1\|1635698_1637057_+\|glycerol-3-phosphate-transporter	unknown	unknown	gnl\|CDD\|236889
NZ_CP040107.1\|WP_001209872.1\|1632548_1633808_-\|glycerol-3-phosphate-dehydrogenase-subunit-GlpB	unknown	unknown	gnl\|CDD\|225617
NZ_CP040107.1\|WP_000990779.1\|1651385_1652108_-\|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase	unknown	unknown	gnl\|CDD\|235350
NZ_CP040107.1\|WP_001301786.1\|1638361_1639432_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040107.1\|WP_001104501.1\|1661876_1662671_+\|DUF2300-domain-containing-protein	unknown	unknown	gnl\|CDD\|227732
NZ_CP040107.1\|WP_001000379.1\|1631361_1632552_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C	unknown	unknown	gnl\|CDD\|132422
NZ_CP040107.1\|WP_001295211.1\|1656714_1657338_+\|DUF1175-domain-containing-protein	unknown	unknown	gnl\|CDD\|225774
NZ_CP040107.1\|WP_001263825.1\|1647492_1651245_+\|AIDA-I-family-autotransporter-adhesin-YfaL/EhaC	unknown	unknown	gnl\|CDD\|182059
NZ_CP040107.1\|WP_001075170.1\|1644511_1646797_-\|ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|181649
NZ_CP040107.1\|WP_000660231.1\|1640925_1642116_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341042
NZ_CP040107.1\|WP_042355394.1\|1655089_1656718_+\|DUF2138-domain-containing-protein	unknown	unknown	gnl\|CDD\|227030
NZ_CP040107.1\|WP_000135039.1\|1642900_1643155_-\|ferredoxin-like-diferric-tyrosyl-radical-cofactor-maintenance-protein-YfaE	unknown	unknown	gnl\|CDD\|182668
NZ_CP040107.1\|WP_001281251.1\|1652254_1654882_+\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A	unknown	unknown	gnl\|CDD\|235502
NZ_CP040107.1\|WP_000857257.1\|1633797_1635426_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	unknown	unknown	gnl\|CDD\|236847
NZ_CP040107.1\|WP_000141661.1\|1662743_1663526_+\|DUF2300-domain-containing-protein	unknown	unknown	gnl\|CDD\|227732

Protein	Function_ID	Function_description	E-value
NZ_CP040107.1\|WP_000176738.1\|1639895_1640774_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|176102	cd05466, PBP2_LTTR_substrate, The substrate binding domain of LysR-type transcriptional regulators (LTTRs), a member of the type 2 periplasmic binding fold protein superfamily. This model and hierarchy represent the the substrate-binding domain of the LysR-type transcriptional regulators that form the largest family of prokaryotic transcription factor. Homologs of some of LTTRs with similar domain organizations are also found in the archaea and eukaryotic organisms. The LTTRs are composed of two functional domains joined by a linker helix involved in oligomerization: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal substrate-binding domain, which is structurally homologous to the type 2 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcriptional repressor undergoes a conformational change upon substrate binding which in turn changes the DNA binding affinity of the repressor. The genes controlled by the LTTRs have diverse functional roles including amino acid biosynthesis, CO2 fixation, antibiotic resistance, degradation of aromatic compounds, oxidative stress responses, nodule formation of nitrogen-fixing bacteria, synthesis of virulence factors, toxin production, attachment and secretion, to name a few. The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the substrate-binding domains from ionotropic glutamate receptors, LysR-like transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	1.9401e-45
NZ_CP040107.1\|WP_000301028.1\|1642196_1642847_+\|lipopolysaccharide-kinase-InaA	gnl\|CDD\|182136	PRK09902, PRK09902, lipopolysaccharide kinase InaA.	4.41923e-159
NZ_CP040107.1\|WP_000332037.1\|1643154_1644285_-\|ribonucleotide-diphosphate-reductase-subunit-beta	gnl\|CDD\|181647	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed.	0
NZ_CP040107.1\|WP_001225855.1\|1663530_1664307_+\|YfaP-family-protein	gnl\|CDD\|227021	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown].	3.30839e-153
NZ_CP040107.1\|WP_021502145.1\|1657481_1661876_+\|alpha-2-macroglobulin-family-protein	gnl\|CDD\|225248	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only].	0
NZ_CP040107.1\|WP_000948724.1\|1635698_1637057_+\|glycerol-3-phosphate-transporter	gnl\|CDD\|236889	PRK11273, glpT, glycerol-3-phosphate transporter.	0
NZ_CP040107.1\|WP_001209872.1\|1632548_1633808_-\|glycerol-3-phosphate-dehydrogenase-subunit-GlpB	gnl\|CDD\|225617	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism].	0
NZ_CP040107.1\|WP_000990779.1\|1651385_1652108_-\|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase	gnl\|CDD\|235350	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG.	1.1677e-171
NZ_CP040107.1\|WP_001104501.1\|1661876_1662671_+\|DUF2300-domain-containing-protein	gnl\|CDD\|227732	COG5445, COG5445, Predicted secreted protein [Function unknown].	2.60621e-126
NZ_CP040107.1\|WP_001295211.1\|1656714_1657338_+\|DUF1175-domain-containing-protein	gnl\|CDD\|225774	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown].	7.99004e-141
NZ_CP040107.1\|WP_001263825.1\|1647492_1651245_+\|AIDA-I-family-autotransporter-adhesin-YfaL/EhaC	gnl\|CDD\|182059	PRK09752, PRK09752, AIDA-I family autotransporter YfaL.	0
NZ_CP040107.1\|WP_001000379.1\|1631361_1632552_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C	gnl\|CDD\|132422	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit. Members of this protein family are the membrane-anchoring, non-catalytic C subunit, product of the glpC gene, of a three-subunit, FAD-dependent, anaerobic glycerol-3-phosphate dehydrogenase. GlpC lasks classical hydrophobic transmembrane helices; Cole, et al suggest interaction with the membrane may involve amphipathic helices. GlcC has conserved Cys-containing motifs suggestive of iron-sulfur binding. This complex is found mostly in Escherichia coli and closely related species. [Energy metabolism, Anaerobic].	0
NZ_CP040107.1\|WP_000660231.1\|1640925_1642116_+\|MFS-transporter	gnl\|CDD\|341042	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli membrane proteins, YfcJ and YhhS, Bacillus subtilis uncharacterized MFS-type transporter YwoG, and similar proteins. YfcJ and YhhS are putative arabinose efflux transporters. YhhS has been implicated glyphosate resistance. YfcJ-like arabinose efflux transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	4.20553e-100
NZ_CP040107.1\|WP_042355394.1\|1655089_1656718_+\|DUF2138-domain-containing-protein	gnl\|CDD\|227030	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown].	0
NZ_CP040107.1\|WP_001075170.1\|1644511_1646797_-\|ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|181649	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha.	0
NZ_CP040107.1\|WP_000135039.1\|1642900_1643155_-\|ferredoxin-like-diferric-tyrosyl-radical-cofactor-maintenance-protein-YfaE	gnl\|CDD\|182668	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein.	1.23742e-52
NZ_CP040107.1\|WP_001281251.1\|1652254_1654882_+\|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A	gnl\|CDD\|235502	PRK05560, PRK05560, DNA gyrase subunit A; Validated.	0
NZ_CP040107.1\|WP_000857257.1\|1633797_1635426_-\|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A	gnl\|CDD\|236847	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A.	0
NZ_CP040107.1\|WP_000141661.1\|1662743_1663526_+\|DUF2300-domain-containing-protein	gnl\|CDD\|227732	COG5445, COG5445, Predicted secreted protein [Function unknown].	4.11509e-123

>NZ_CP040107.1|WP_000332037.1|1643154_1644285_-|ribonucleotide-diphosphate-reductase-subunit-beta
MAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQLSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISIPELETWVETWAFSETIHSRSYTHIIRNIVNDPSVVFDDIVTNEQIQKRAEGISSYYDELIEMTSYWHLLGEGTHTVNGKTVTVSLRELKKKLYLCLMSVNALEAIRFYVSFACSFAFAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGADDPEMAEIAEECKQECYDLFVQAAQQEKDWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIPWINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTDDLSNFQL
>NZ_CP040107.1|WP_000135039.1|1642900_1643155_-|ferredoxin-like-diferric-tyrosyl-radical-cofactor-maintenance-protein-YfaE
MARVTLRITGTQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEPLAFIQPGEILPCCCRAKGDIEIEL
>NZ_CP040107.1|WP_000301028.1|1642196_1642847_+|lipopolysaccharide-kinase-InaA
MAVSAKHDEFNHWWATEGDWVEEPNYRRNGMSGVQCVERNGKKLYVKRMTHHLFHSVRYPFGRPTIVREVAVIKELERAGVIVPKIVFGEAVKIEGEWRALLVTEDMAGFISIADWYAQHAVTPYSDEVRQAMLKAVALAFKKMHSVNRQHGCCYVRHIYVKTEGKAEAGFLDLEKSRRRLRRDKAINHDFRQLEKYLEPIPKADWEQVKAYYYAM
>NZ_CP040107.1|WP_000660231.1|1640925_1642116_+|MFS-transporter
MKEKLWTKDFWAITIISFIIFFVFYVLLTLLPIYISDRLHASPDKAGLLVTLFLIAAIVIRPFAGQWVGKYSNKTILVLSSLAFLVVTALYPFCHSIESLLFIRVLHGITFGVITTVKGTISARLIPASRRGEGISFFSLAMGLAMVVGPWIGLNMARWEAFNMAFWLCTGVAAVGIILSLIMTVPPVISHADGSKPKMGFAAMFDRAALPFAMVTFFMTFSYAGVSAFLALYARELNLMSAASNFLLCYAIFLMICRTFTGNVCDKKGPKYVVYPCLLFFTVGLVVLGYTQGSVMMVVSGALIGIGYGSVTPVFQTQIISSVEPHKIGVANSLFFNAMDAGLALGACVMGMMVAHTGYRMIYLLGALLVVVAGGVYALQMKGKSGVALVVAKEIH
>NZ_CP040107.1|WP_000176738.1|1639895_1640774_-|LysR-family-transcriptional-regulator
MTLTQINSLLAVLDYGGFTEASKRLFMTQSAVSQAIAALEQELGVNILLRDRRKAIQLTTAGHRIVQHLRAINREVNAVKEIAEQEKQNPQRTLRLGCFPSVCACILPVVIRYFEIHHPNIKIIPFEENSTAIIDSLQNESIDAGFVHFPVSGMYSVPIYQDKFTVVLPPNHALAKNSTITVEELMGEPLIISKGRYELSIMALFKEKNITPQIKYEFNHPDTAISFIRQGLGIALLPELTLKTIADELCSVPLEPTFYRQISLLAKEKPVEGSPLFLLQMCTEQLVVSGKI
>NZ_CP040107.1|WP_001301786.1|1638361_1639432_-|hypothetical-protein
MPNTSIHLSRCNILQNNKLQPTEIYKESQQTAKLEFFCDEFLKISQSRYGLSTSTDSIANLLAFFTKASDAIDSIKTQKIDVHSYGFVPIRHFVEHVITYKNEFAADYEPYTLTFTRGENNEGILSVESKEGFISQRTINLNEYETAINIINEHVIKENIHNTVQSPTEKYISKINSSDKPYKTSSKESIKSQLYSDQRNIQTCYYILRKNTEWYKYASSEERYDKFKNSSKEIKNTYKQIVQAQKKLNQMKYINKLSGELIDITDKKLAPLINDSFSYTRDFFAYSKQEKNIFTFDNSKFVDPKEKEGLMVQHSNGQLVITGKYCPEGVQTAFTQEQYDKLIRYINIFFTFPKLE
>NZ_CP040107.1|WP_000948724.1|1635698_1637057_+|glycerol-3-phosphate-transporter
MLSIFKPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFFYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHQELLQKRNGG
>NZ_CP040107.1|WP_000857257.1|1633797_1635426_-|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-A
MKTRDSQSSDVIIIGGGATGAGIARDCALRGLRVILVERHDIATGATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVEPTNGLFITLPEDDLSFQATFIRACEEAGISAEAIDPQQARIIEPAVNPALIGAVKVPDGTVDPFRLTAANMLDAKEHGAVILTAHEVTGLIREGATVCGVRVRNHLTGETQALHAPVVVNAAGIWGQHIAEYADLRIRMFPAKGSLLIMDHRINQHVINRCRKPSDADILVPGDTISLIGTTSLRIDYNEIDDNRVTAEEVDILLREGEKLAPVMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFITITGGKLMTYRLMAEWATDAVCRKLGNTRPCTTADLALPGSQEPAEVTLRKVISLPAPLRGSAVYRHGDRTPAWLSEGRLHRSLVCECEAVTAGEVQYAVENLNVNSLLDLRRRTRVGMGTCQGELCACRAAGLLQRFNVTTSAQSIEQLSTFLNERWKGVQPIAWGDALRESEFTRWVYQGLCGLEKEQKDAL
>NZ_CP040107.1|WP_001209872.1|1632548_1633808_-|glycerol-3-phosphate-dehydrogenase-subunit-GlpB
MRFDTIIMGGGLAGLLCGLQLQKHGLRCAIVTRGQSALHFSSGSLDLLSHLPDGQAVTDIHSGLESLRQQAPAHPYSLLGPQRVLDLACQAQALIAESGAQLQGSVELPHQRITPLGTLRSTWLSSPEVPVWPLPAKKICVVGISGLMDFQAHLAAASLRELDLAVETAEIELPELDVLRNNATEFRAVNIARFLDNEENWPLLLDALIPVANTCEMILMPACFGLADDKLWRWLNEKLPCSLMLLPTLPPSVLGIRLQNQLQRQFVRQGGVWMPGDEVKKVTCKNGVVNEIWTRNHADIPLRPRFAVLASGSFFSGGLVAERNGIREPILGLDVLQTATRGEWYKGDFFAPQPWQQFGVTTDQTLRPSQAGQTIENLFTIGSVLGGFDPIAQGCGGGVCAVSALHAAQQIAQRAGGQQ
>NZ_CP040107.1|WP_001000379.1|1631361_1632552_-|anaerobic-glycerol-3-phosphate-dehydrogenase-subunit-C
MNDTSFENCIKCTVCTTACPVSRVNPGYPGPKQAGPDGERLRLKDGALYDEALKYCINCKRCEVACPSDVKIGDIIQRARAKYDTTRPSLRNFVLSHTDLMGSVSTPFAPIVNTATSLKPVRQLLDAALKIDHRRTLPKYSFGTFRRWYRSVAAQQAQYKDQVAFFHGCFVNYNHPQLGKDLIKVLNAMGTGVQLLSKEKCCGVPLIANGFTDKARKQAITNVESIREAVGVKGIPVIATSSTCTFALRDEYPEVLNVDNKGLRDHIELATRWLWRKLDEGKTLPLKPLPLKVVYHTPCHMEKMGWTLYTLELLRNIPGLELTVLDSQCCGIAGTYGFKKENYPTSQAIGAPLFRQIEESGADLVVTDCETCKWQIEMSTSLRCEHPITLLAQALA
>NZ_CP040107.1|WP_001075170.1|1644511_1646797_-|ribonucleoside-diphosphate-reductase-subunit-alpha
MNQNLLVTKRDGSTERINLDKIHRVLDWAAEGLHNVSISQVELRSHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAYGQFEPPALYDHVVKMVEMGKYDNHLLEDYTEEEFKQMDTFIDHDRDMTFSYAAVKQLEGKYLVQNRVTGEIYESAQFLYILVAACLFSNYPRETRLQYVKRFYDAVSTFKISLPTPIMSGVRTPTRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHTGCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMDYGVQINKLMYTRLLKGEDITLFSPSDVPGLYDAFFADQEEFERLYTKYEKDDSIRKQRVKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPAIAPVRQSNLCLEIALPTKPLNDVNDENGEIALCTLSAFNLGAINSLDELEELAILAVRALDALLDYQDYPIPAAKRGAMGRRTLGIGVINFAYYLAKHGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACPWFNETTYAKGILPIDTYKKDLDAIANEPLHYDWEALRESIKTHGLRNSTLSALMPSETSSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLHDAYELLWEMPGNDGYLQLVGIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDGAEDAQDDLVPSIQDDGCESGACKI
>NZ_CP040107.1|WP_001263825.1|1647492_1651245_+|AIDA-I-family-autotransporter-adhesin-YfaL/EhaC
MRVIFLRKEYLSLLPSMIASLFSANGVAAAIDLCQGYDIKASCHASRQSLSGITQVWSIADGQWLVFSDMTNNASGGAVFLQQGAEFTLSPENETGMTLFANNTVSGEYNNGGAIFAKENSTLNLTDVIFSGNVAGGYGGAIYSSGTNDTGAIDLRVTNAVFRNNIANDGKGGAIYTINNDIYLSDDVFNNNQAYTSTSYSDGDGGAIDVTDNNSDSKHPSGYTIINNTAFTNNTAEGYGGAIYTNSATAPYLIDISVDDSYSQNGGVLVDENNSAAGYGDGPSSAAGGFMYLGLSEVIFDIADGKTLVIGNTENDGAVDSIAGTGLITKTGSGDLVLNADNNDFTGEMQIENGEVTLGRSNSLMNVGDTHCQDDPQDCYGLTIGSIDKYQNQAELNVGSTQQTFAHSLTGFQNGTLNIDAGGNVTVNQGSFAGTIEGAGQLTIAQNGSYVLAGAQSMALTGDIVVDAGAVLSLEGDAADLAALQDDPQSIVLNGGMLDLSDFSTWQSGTSYKDGLEVSGSSGTVIGSQDVVDLAGGNDMHIGGDGKDGVYVVIDAGDGQVSLANDNQYLGTTQIASGTLMVSDNSQLGYTHYNRQVIFTDKPQESVMEITANVDTRSTTTEHGRDIEMRADGEVAVDAGVDTQWGALMADSSGQHQDEGSTLTKTGAGTLELTASGTTQSAVRVEEGTLQGDVADIFPYASSLWVGDGATFVTGADQDIQSIDATSSGTIDISDGTVLRLTGQDTSVALNASLFNCDGTLVNATDGVTLTGELNTNLETDSLTYLSNVTVNGNLTNTSGAVSLQNGVAGDTLTVNGDYTGGGTLLLDSELNGDDSVSDQLVMNGNTAGNTTVVVNSITGIGEPTSTGIKVVDFAADPTQFQNNAQFSLAGSGYVNMGAYDYTLVEDNNDWYLRSQEVTPPSPPDPDPTPDPDPTQDPDPTPDPEPTPAYQPVLNAKVGGYLNNLRAANQAFMMERRDHAGGDGQTLNLRVIGGDYHYTAAGQLAQHEDTSTVQLSGDLFSGRWGTDGEWMLGIVGGYSDNQGDSRSSMTGTRADNQNHGYAVGLTSSWFQHGKQKQGAWLDNWLQYAWFSNDVSEHEDGVDHYHSSGIIASLEAGYQWLPGRGVVIEPQAQVIYQGVQQDDFTAANRARVSQSQGDDIQTRLGLHSEWRTAVHVIPTLDLNYYHDPHSTEIEEDASTISDDAVKQRGEIKVGVTGNISQRVSLRGSVAWQKGSDDFAQTAGFLSMTVKW
>NZ_CP040107.1|WP_000990779.1|1651385_1652108_-|bifunctional-3-demethylubiquinone-3-O-methyltransferase/2-octaprenyl-6-hydroxy-phenol-methylase
MNAEKSPVNHNVDHEEIAKFEAVASRWWDLEGEFKPLHRINPLRLSYIAERAGGLFGKKVLDVGCGGGILAESMAREGATVTGLDMGFEPLQVAKLHALESGIQVDYVQETVEEHAAKHAGQYDVVTCMEMLEHVPDPQSVVRACAQLVKPGGDVFFSTLNRNGKSWLMAVVGAEYILRMVPKGTHDVKKFIKPAELLGWVDQTSLKERHITGLHYNPITNTFKLGPGVDVNYMLHTQNK
>NZ_CP040107.1|WP_001281251.1|1652254_1654882_+|DNA-topoisomerase-(ATP-hydrolyzing)-subunit-A
MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKVYIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRREVVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARPEWLEPEFGVRDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSADRLMEVIREELELVREQFGDKRRTEITANSADINLEDLITQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVEGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVAEPVDEEDLDTIDGSAAEGDDEIAPEVDVDDEPEEE
>NZ_CP040107.1|WP_042355394.1|1655089_1656718_+|DUF2138-domain-containing-protein
MALLSAGVWALQYAGSGPEKTLSPLVVHNNLQIDLNEPDLFLDSDSLSQLPKDLLTIPFLHDVLSEDFVFYYQNHADRLGIEGSIRRIVYEHDLTLKDKLFSSLLDQPAQAALWHDKQGHLSHYMVLIQRSGLSKLLEPLLFAATSDSQLSKTEISSIKINSETIPVYQLRYNGNNALMFATYQDKMLVFSSTDMLFKDDQQDTEATAIASDLLSGKKRWQASFGLEERAAEKTPVRQRIVASARLLGFGYQRLMPSFAGVRFEMGNDGWHSFVALNDESASVDASFDFTPVWNSMPAGASFCVAVPYSHGIAEEMLSHISQENDKLNGALDGAAGLCWYEDSKLQTPLFVGQFDGTAEQAQLPGKLFTQNIGAHESKAPEGVLPVSQTQQGEAQIWRREVSSRYGQYPKAQAAQPDQLMSDYFFRVSLAMQNKTLLFSLDDTLVNNALQTLNKTRPAMVDVIPTDGIVPLYINPQGVAKLLRNETLTSLPKNLEPVFYNAAQTLLMPKLDALSQQPRYVMKLAQMEPGAAWQWLPIIWQPL
>NZ_CP040107.1|WP_001295211.1|1656714_1657338_+|DUF1175-domain-containing-protein
MRHGLLALICWLCCVVAHSEMLNVEQSGLFRAWFVRIAQEQLRQGPSPRWYQQDCAGLVRFAANETLKVHDSKWLKSNGLSSQYLPPEMTLTPEQRQLAQNWNQGNGKTGPYVTAINLIQYNSQFIGQDINQALPGDMIFFDQGDAQHLMVWMGRYVIYHTGSATKTDNGMRAVSLQQLMTWKDTRWIPNDSNPNFIGIYRLNFLAR
>NZ_CP040107.1|WP_021502145.1|1657481_1661876_+|alpha-2-macroglobulin-family-protein
MRLEAPGRDYRRYQMEEYGGVDVRLYRIPDPMAFLRQQKNLHRIVVQPQYLGDGLNNTLTWLWDNWYGKSRRVMQRTFSSQSRQNVTQALPELQLGNAIIKPSRYVQNNQFSPLKKYPLVEQFRYPLWQAKPVEPQQGVKLEGASSNFISPQPGNIYIPLGQQEPGLYLVEAMVGGYRATTVVFVSDTVALSKVSGKELLVWTAGKKQGEAKPGSEILWTDGLGVMTRGVTDDSGTLQLQHISPERSYILGKDAEGGVFVSENFFYESEIYNTRLYIFTDRPLYRAGDRVDVKVMGREFHDPLHSSPIVSAPAKLSVLDANGSLLQTVDVTLDARNGGQGSFRLPENAVAGGYELRLAYRNQVYSSSFRVANYIKPHFEIGLALDKKEFKTGEAVSGKLQLLYPDGEPVKNARVQLSLRAQQLSMVGNDLRYAGRFPVSLEGSETVSDASGHVALNLPAADKPSRYLLTVSASDGAAYRVTTTKEILIERGLAHYSLSTAAQYSNSGESVVFRYAALESSKQVPVTYEWLRLEDRTSHSGDLPSGGKSFTVNFDKPGNYNLTLRDKDGLILAGLSHAVSGKGSMSHTGTVDIVADKTLYQPGETAKMLITFPEPIDEALLTLERDRVEQQSLLSHPANWLTLQRLNDTQYEARVPVSNSFAPNITFSVLYTRNGQYSFQNAGIKVAVPQLDIRVKTDKTHYQPGELVNVELTSSLKGKPVSAQLTVGVVDEMIYALQPEIAPNIGKFFYPLGRNNVRTSSSLSFISYDQALSSEPVAPGATNRSERRVKMLERPRREEVDTAAWMPSLTTDKQGKAYFTFLMPDSLTRWRITARGMNGDGLVGQGRAYLRSEKNLYMKWSMPTVYRVGDKPSAGLFIFSQQDNEPVALVTKFAGAEMRQTLTLHKGANYISLAQNIQQSGLLSAELQQNGQVQDSISTKLSFVDNSWPVEQQKNVMLGGGDNALMLPEQASNIRLQSSETPQEIFRNNLDALVDEPWGGVINTGSRLIPLSLAWRSLADHQSAAANDIRQMIQDNRLRLMQLAGPGARFTWWGEDGNGDAFLTAWAWYADWQASQALGVTQQPEYWQHMLDSYAEQADNMPLLHRALVLAWAQEMNLPCKTLLKGLDEAIARRGTKTEDFSEEDTRDINDSLILDTPESPLADAVANVLTMTLLKKAQLKSTVMPQVQQYAWDKAVNSNQPLAHTVVLLNSGGDATQAAAILSGLTAEQSTIERALAMNWLAKYMATMPSVVLPAPAGAWAKHKLTGGGEYWRWVGQGVPDILSFGDELSPQNVQVRWREAAKTAQQSNIPVTVERQLYRLIPGEEEMSFTLQPVTSNEIDSDALYLDEITLTSEQDAVLRYGQVEVPLPPGADVERTTWGISVNKPNAGKQQGQLLEKARNEMGELAYMVPVKELTGTVTFRHLLRFSQKGQFVLPPARYVRSYAPAQQSVAAGSEWTGMQVK
>NZ_CP040107.1|WP_001104501.1|1661876_1662671_+|DUF2300-domain-containing-protein
MNWRRIVWLLALVTLPTLAEETPLQLALRGAQHDQLYQLSSSGVTKVSALPDTLTTPLGSLWKLYVYAWLEDTHQPEQPYQCRGNSPEEVYCCQAGESITRDTALVRSCGLYFAPQRLHIGADVWGQYWQQRQAPAWLASLSTLKPETSVTVKSLLDSLATLPAQNKAQEVLLDVVLDEAKIGVASMLGSRVRVKTWSWFADDKQEIRQGGFAGWLTDGTPLWVTGSGTSKTVLTRYATVLNRVLPVPTQVASGQCVEVELFAR
>NZ_CP040107.1|WP_000141661.1|1662743_1663526_+|DUF2300-domain-containing-protein
MTFANGNHITFVSHGETTLLTEKGKLKLQSHLDREEYVARVLDREAKSTPPEAAKAMTVAIRTFLQQNANREGDCLTIPDSSATQRVSASPATTGARTMTVWTQDLIYAGDPVHYHGSRATEGTLSWRQAMAQAGKGERYDQILAFAYPDNSLSRWGAPRTTCQLLPKAKAWLAKKMPQWRRILQGETGYNEPDVFAVCRLVSGFPYTDRQQKRLFIRNFFTLQDRLDLTHEYLHLAFDGYPTGLDENYIETLTRQLLMD
>NZ_CP040107.1|WP_001225855.1|1663530_1664307_+|YfaP-family-protein
MRKIFLPLLLVALSPVAHSEGVQEVEIDAPLSGWHPAEGEDASFSQSINYPASSVNMADDQNISAQIRGKIKNYAAAGKVQQGRLVVNGASMPQRIESDGSFARPYIFTEGSNSVQVISPDGQSRQKMQFYSTPGTGTIRARLRLVLSWDTDNTDLDLHVVTPDGEHAWYGNTVLKNSGALDMDVTTGYGPEIFAMPAPVHGRYQVYINYYGGRSETELTTAQLTLITDEGSVNEKQETFIVPMRNAGELTLVKSFDW

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Crispr_ID: NZ_CP040107_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040107_4

2281514-2281663

Orphan

Consensus_repeat	Method
TACCAGAGATAGCGAACCGTAGGTCGGAAAAGGCGCTCGCGCCGCATCCGACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040107_4

>merge|NZ_CP040107|4|2281514-2281663|CRISPRCasFinder
TACCAGAGATAGCGAACCGTAGGTCGGAAAAGGCGCTCGCGCCGCATCCGACATTGGCAGTGTGCCTGATGCGACGCTGTTCGCGTCTTACCAGGCCTACCAGAGATAGCGAACCGTAGGTCGGATAAGGCGCTCGCGCCGCATCCGACA

>NZ_CP040107|4|4|2281514-2281663|CRISPRCasFinder
TACCAGAGATAGCGAACCGTAGGTCGGAAAAGGCGCTCGCGCCGCATCCGACA	TTGGCAGTGTGCCTGATGCGACGCTGTTCGCGTCTTACCAGGCC
TACCAGAGATAGCGAACCGTAGGTCGGATAAGGCGCTCGCGCCGCATCCGACA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040107.1\|WP_001184045.1\|2284245_2285568_+\|murein-DD-endopeptidase-MepM	unknown	unknown	gnl\|CDD\|236946
NZ_CP040107.1\|WP_001258685.1\|2275259_2277032_+\|aspartate--tRNA-ligase	unknown	unknown	gnl\|CDD\|234775
NZ_CP040107.1\|WP_000448391.1\|2285687_2286659_+\|lauroyl-Kdo(2)-lipid-IV(A)-myristoyltransferase	unknown	unknown	gnl\|CDD\|236355
NZ_CP040107.1\|WP_000091169.1\|2286789_2288232_-\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|235619
NZ_CP040107.1\|WP_010723105.1\|2279601_2279667_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040107.1\|WP_000800512.1\|2293124_2293766_+\|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase	unknown	unknown	gnl\|CDD\|235577
NZ_CP040107.1\|WP_001024949.1\|2278928_2279531_-\|YebB-family-permuted-papain-like-enzyme	unknown	unknown	gnl\|CDD\|183152
NZ_CP040107.1\|WP_000568519.1\|2280425_2281436_+\|Holliday-junction-branch-migration-DNA-helicase-RuvB	unknown	unknown	gnl\|CDD\|234619
NZ_CP040107.1\|WP_000891621.1\|2274383_2274950_-\|hydrolase	unknown	unknown	gnl\|CDD\|183137
NZ_CP040107.1\|WP_000580323.1\|2279805_2280417_+\|Holliday-junction-branch-migration-protein-RuvA	unknown	unknown	gnl\|CDD\|234645
NZ_CP040107.1\|WP_000639267.1\|2273568_2274387_-\|DUF72-domain-containing-protein	unknown	unknown	gnl\|CDD\|182366
NZ_CP040107.1\|WP_000571476.1\|2281681_2282467_-\|zinc-ABC-transporter-permease-subunit-ZnuB	unknown	unknown	gnl\|CDD\|181938
NZ_CP040107.1\|WP_001056694.1\|2288359_2289229_-\|DNA-binding-transcriptional-regulator-HexR	unknown	unknown	gnl\|CDD\|183082
NZ_CP040107.1\|WP_001300367.1\|2277149_2277602_+\|dihydroneopterin-triphosphate-diphosphatase	unknown	unknown	gnl\|CDD\|236516
NZ_CP040107.1\|WP_000907234.1\|2277630_2278371_+\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|234640
NZ_CP040107.1\|WP_000202996.1\|2282463_2283219_-\|zinc-ABC-transporter-ATP-binding-protein-ZnuC	unknown	unknown	gnl\|CDD\|181939
NZ_CP040107.1\|WP_001069467.1\|2291276_2293088_+\|phosphogluconate-dehydratase	unknown	unknown	gnl\|CDD\|181628
NZ_CP040107.1\|WP_001303192.1\|2283297_2284230_+\|zinc-ABC-transporter-substrate-binding-protein-ZnuA	unknown	unknown	gnl\|CDD\|236558
NZ_CP040107.1\|WP_000301737.1\|2289566_2291042_+\|glucose-6-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|235579
NZ_CP040107.1\|WP_001295503.1\|2278405_2278927_+\|crossover-junction-endodeoxyribonuclease-RuvC	unknown	unknown	gnl\|CDD\|129331

Protein	Function_ID	Function_description	E-value
NZ_CP040107.1\|WP_001184045.1\|2284245_2285568_+\|murein-DD-endopeptidase-MepM	gnl\|CDD\|236946	PRK11649, PRK11649, putative peptidase; Provisional.	0
NZ_CP040107.1\|WP_001258685.1\|2275259_2277032_+\|aspartate--tRNA-ligase	gnl\|CDD\|234775	PRK00476, aspS, aspartyl-tRNA synthetase; Validated.	0
NZ_CP040107.1\|WP_000448391.1\|2285687_2286659_+\|lauroyl-Kdo(2)-lipid-IV(A)-myristoyltransferase	gnl\|CDD\|236355	PRK08943, PRK08943, lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated.	0
NZ_CP040107.1\|WP_000091169.1\|2286789_2288232_-\|pyruvate-kinase	gnl\|CDD\|235619	PRK05826, PRK05826, pyruvate kinase; Provisional.	0
NZ_CP040107.1\|WP_001069467.1\|2291276_2293088_+\|phosphogluconate-dehydratase	gnl\|CDD\|181628	PRK09054, PRK09054, phosphogluconate dehydratase; Validated.	0
NZ_CP040107.1\|WP_000800512.1\|2293124_2293766_+\|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase	gnl\|CDD\|235577	PRK05718, PRK05718, keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional.	4.22426e-135
NZ_CP040107.1\|WP_001024949.1\|2278928_2279531_-\|YebB-family-permuted-papain-like-enzyme	gnl\|CDD\|183152	PRK11470, PRK11470, YebB family permuted papain-like enzyme.	5.39625e-135
NZ_CP040107.1\|WP_000568519.1\|2280425_2281436_+\|Holliday-junction-branch-migration-DNA-helicase-RuvB	gnl\|CDD\|234619	PRK00080, ruvB, Holliday junction branch migration DNA helicase RuvB.	0
NZ_CP040107.1\|WP_000891621.1\|2274383_2274950_-\|hydrolase	gnl\|CDD\|183137	PRK11440, PRK11440, putative hydrolase; Provisional.	4.9839e-137
NZ_CP040107.1\|WP_000580323.1\|2279805_2280417_+\|Holliday-junction-branch-migration-protein-RuvA	gnl\|CDD\|234645	PRK00116, ruvA, Holliday junction branch migration protein RuvA.	7.87495e-104
NZ_CP040107.1\|WP_000639267.1\|2273568_2274387_-\|DUF72-domain-containing-protein	gnl\|CDD\|182366	PRK10302, PRK10302, hypothetical protein; Provisional.	0
NZ_CP040107.1\|WP_000571476.1\|2281681_2282467_-\|zinc-ABC-transporter-permease-subunit-ZnuB	gnl\|CDD\|181938	PRK09543, znuB, zinc ABC transporter permease subunit ZnuB.	2.64509e-163
NZ_CP040107.1\|WP_001056694.1\|2288359_2289229_-\|DNA-binding-transcriptional-regulator-HexR	gnl\|CDD\|183082	PRK11302, PRK11302, DNA-binding transcriptional regulator HexR; Provisional.	0
NZ_CP040107.1\|WP_001300367.1\|2277149_2277602_+\|dihydroneopterin-triphosphate-diphosphatase	gnl\|CDD\|236516	PRK09438, nudB, dihydroneopterin triphosphate pyrophosphatase; Provisional.	2.13728e-99
NZ_CP040107.1\|WP_000907234.1\|2277630_2278371_+\|YebC/PmpR-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|234640	PRK00110, PRK00110, YebC/PmpR family DNA-binding transcriptional regulator.	4.59796e-164
NZ_CP040107.1\|WP_000202996.1\|2282463_2283219_-\|zinc-ABC-transporter-ATP-binding-protein-ZnuC	gnl\|CDD\|181939	PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.	0
NZ_CP040107.1\|WP_001303192.1\|2283297_2284230_+\|zinc-ABC-transporter-substrate-binding-protein-ZnuA	gnl\|CDD\|236558	PRK09545, znuA, zinc ABC transporter substrate-binding protein ZnuA.	0
NZ_CP040107.1\|WP_000301737.1\|2289566_2291042_+\|glucose-6-phosphate-dehydrogenase	gnl\|CDD\|235579	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated.	0
NZ_CP040107.1\|WP_001295503.1\|2278405_2278927_+\|crossover-junction-endodeoxyribonuclease-RuvC	gnl\|CDD\|129331	TIGR00228, Crossover_junction_endodeoxyribonuclease_RuvC, crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC. [DNA metabolism, DNA replication, recombination, and repair].	1.05967e-94

>NZ_CP040107.1|WP_000568519.1|2280425_2281436_+|Holliday-junction-branch-migration-DNA-helicase-RuvB
MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGATTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDGTISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATTRAWNHFGITPPEMP
>NZ_CP040107.1|WP_000580323.1|2279805_2280417_+|Holliday-junction-branch-migration-protein-RuvA
MIGRLRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTPAADLVLTSPASPATDDAEQEAVAALVALGYKPQEASRMVSKIARPDASSETLIREALRAAL
>NZ_CP040107.1|WP_010723105.1|2279601_2279667_+|hypothetical-protein
MYIFITHFFTEYVILKYLLPI
>NZ_CP040107.1|WP_001024949.1|2278928_2279531_-|YebB-family-permuted-papain-like-enzyme
MNINYPAEYEIGDKVFTCIGAALFGQISAASNCWSNHVGIIIGHNGEDFLVAESRVPLSTITTLSRFIKRSSNQRYAIKRLDAGLTEQQKQRIVEQVPSRLRKLYHTGFKYESSRQFCSKFVFDIYKEALCIPVGEIETFGELLNSNPNAKLTFWKFWFLGSIPWERKTVTPASLWHHPGLVLIHAEGVETPQPELTEAV
>NZ_CP040107.1|WP_001295503.1|2278405_2278927_+|crossover-junction-endodeoxyribonuclease-RuvC
MAIILGIDPGSRVTGYGVIRQVGRQLSYLGSGCIRTKVDDLPSRLKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEYAARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQMSESRLNLARGRLR
>NZ_CP040107.1|WP_000907234.1|2277630_2278371_+|YebC/PmpR-family-DNA-binding-transcriptional-regulator
MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPDANPRLRAAIDKALSNNMTRDTLNRAIARGVGGDDDANMETIIYEGYGPGGTAIMIECLSDNRNRTVAEVRHAFSKCGGNLGTDGSVAYLFSKKGVISFEKGDEDTIMEAALEAGAEDVVTYDDGAIDVYTAWEEMGKVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLMRLIDMLEDCDDVQEVYHNGEISDEVAATL
>NZ_CP040107.1|WP_001300367.1|2277149_2277602_+|dihydroneopterin-triphosphate-diphosphatase
MKDKVYKRPVSILVVIYAQDTKRVLMLQRRDDPDFWQSVTGSVEEGETAPQAAMREVKEEVTIDVVAEQLTLIDCQRTVEFEIFSHLRHRYAPGVTRNTESWFCLALPHERQIVFTEHLAYKWLDAPAAAALTKSWSNRQAIEQFVINAA
>NZ_CP040107.1|WP_001258685.1|2275259_2277032_+|aspartate--tRNA-ligase
MRTEYCGQLRLSHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGIVQVFFDPDRADALKLASELRNEFCIQVTGTVRARDEKNINRDMATGEIEVLASSLTIINRADVLPLDSNHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQPEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVDLGDFPVMTFAEAERRYGSDKPDLRNPMELTDVADLLRSVEFAVFAGPANDPKGRVAALRVPGGASLTRKQIDEYGNFVKIYGAKGLAYIKVNERAKGLEGINSPVAKFLNAEIIEAILDRTAAQDGDMIFFGADNKKIVADAMGALRLKVGKDLGLTDESKWAPLWVIDFPMFEDDGEGGLTAMHHPFTSPKDMTAAELKAAPENAVANAYDMVINGYEVGGGSVRIHNGDMQQTVFGILGINEEEQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKTTAAACLMTEAPSFANPAALAELSIQVVKKAENN
>NZ_CP040107.1|WP_000891621.1|2274383_2274950_-|hydrolase
MLELNAKTTALVVIDLQEGILPFAGGPHTADEVVNRAGKLAAKFRASGQPVFLVRVGWSADYAEALKQPVDAPSPAKVLPENWWQHPAALGATDSDIEIIKRQWGAFYGTDLELQLRRRGIDTIVLCGISTNIGVESTARNAWELGFNLVIAEDACSAASAEQHNNSINHIYPRIARVRSVEEILNAL
>NZ_CP040107.1|WP_000639267.1|2273568_2274387_-|DUF72-domain-containing-protein
MIYIGLPQWSHPKWVRLGITSLEEYARHFNCVEGNTTLYALPKPEVVLRWREQTTDDFRFCFKFPATISHQAALRHCDDLVTEFLTRMSPLAPRIGQYWLQLPATFGPRELPALWHFLDSLPGEFNYGVEVRHPQFFAKGEEEQTLNRGLHQRGVNQVILDSRPVHAARPHSEAIRDAQRKKPKVPVHAVLTATNPLIRFIGSDDMTQNRELFQVWLQKLAQWHQTTTPYLFLHTPDIAQAPELVHTLWEDLRKTLPEIGAVPAIPQQSSLF
>NZ_CP040107.1|WP_000571476.1|2281681_2282467_-|zinc-ABC-transporter-permease-subunit-ZnuB
MIELLFPGWLAGIMLACAAGPLGSFVVWRRMSYFGDTLAHASLLGVAFGLLLDVNPFYAVIAVTLLLAGGLVWLEKRPQLAIDTLLGIMAHSALSLGLVVVSLMSNIRVDLMAYLFGDLLAVTPEDLISIAIGVVIVVAILFWQWRNLLSMTISPDLAFVDGVKLQRVKLLLMLVTALTIGVAMKFVGALIITSLLIIPAATARRFARTPEQMAGVAVLVGMVAVTDGLTFSAFYDTPAGPSVVLCAALLFIISMMKKQAS
>NZ_CP040107.1|WP_000202996.1|2282463_2283219_-|zinc-ABC-transporter-ATP-binding-protein-ZnuC
MTSLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVTPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLRPGTHKEDILPALKRVQAGHLINAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCGVLMVSHDLHLVMAKTDEVLCLNHHICCSGTPEVVSLHPEFISMFGPRGAEQLGIYRHHHNHRHDLQGRIVLRRGNDRS
>NZ_CP040107.1|WP_001303192.1|2283297_2284230_+|zinc-ABC-transporter-substrate-binding-protein-ZnuA
MLHKKTLLFAALFAALWGGATQAADAAVVASLKPVGFIASAIADGVTETEVLLPDGASEHDYSLRPSDVKRLQNADLVVWVGPEMEAFMQKPVSKLPEAKQVTIAQLEDVKPLLMKSINGDDDDHDHAEKSDEDHHHGDFNMHLWLSPEIARATAVAIHGKLVELMPQSRAKLDANLKDFEAQLASTETQVGNELAPLKGKGYFVFHDAYGYFEKQFGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQFRPAVVESVARGTSVRMGTLDPLGTNIKLGKTSYSEFLSQLANQYASCLKGD
>NZ_CP040107.1|WP_001184045.1|2284245_2285568_+|murein-DD-endopeptidase-MepM
MQQIARSVALAFNNLPRPHRVMLGSLTVLTLAVAVWRPYVYHRDATPIVKTIELEQNEIRSLLPEASEPIDQAAQEDEAIPQDELDDKIAGEAGVHEYVVSTGDTLSSILNQYGIDMGDITQLAAADKELRNLKIGQQLSWTLTADGELQRLTWEVSRRETRTYDRTAANGFKMTSEMQQGEWVNNLLKGTVGGSFVASARNAGLTSAEVSAVIKAMQWQMDFRKLKKGDEFAVLMSREMLDGKREQSQLLGVRLRSEGKDYYAIRAEDGKFYDRNGTGLAKGFLRFPTAKQFRISSNFNPRRTNPVTGRVAPHRGVDFAMPQGTPVLSVGDGEVVVAKRSGAAGYYVAIRHGRSYTTRYMHLRKILVKPGQKVKRGDRIALSGNTGRSTGPHLHYEVWINQQAVNPLTAKLPRTEGLTGSDRREFLAQAKEIVPQLRFD
>NZ_CP040107.1|WP_000448391.1|2285687_2286659_+|lauroyl-Kdo(2)-lipid-IV(A)-myristoyltransferase
METKKNNSEYIPEFDKSFRHPRYWGAWLGVAAMAGIALTPPKFRDPILARLGRIAGRLGKSSRRRALINLSLCFPERSEAEREAIVDEMFATAPQAMAMMAELAIRGPEKIQPRVDWQGLEIIEEMRRNNEKVIFLVPHGWAVDIPAMLMASQGQKMAAMFHNQGNPVFDYVWNTVRRRFGGRLHARNDGIKPFIQSVRQGYWGYYLPDQDHGPEHSEFVDFFATYKATLPAIGRLMKVCRARVVPLFPIYDGKTHRLTIQVRPPMDDLLEADDHTIARRMNEEVEIFVGPRPEQYTWILKLLKTRKPGEIQPYKRKDLYPIK
>NZ_CP040107.1|WP_000091169.1|2286789_2288232_-|pyruvate-kinase
MSRRLRRTKIVTTLGPATDRDNNLEKVIAAGANVVRMNFSHGSPEDHKMRADKVREIAAKLGRHVAILGDLQGPKIRVSTFKEGKVFLNIGDKFLLDANLGKGEGDKEKVGINYKGLPADVVPGDILLLDDGRVQLKVLEVQGMKVFTEVTVGGPLSNNKGINKLGGGLSAEALTEKDKADIKTAALIGVDYLAVSFPRCGEDLNYARRLARDAGCDAKIVAKVERAEAVCSQDAMDDIILASDVVMVARGDLGVEIGDPELVGIQKALIRRARQLNRAVITATQMMESMITNPMPTRAEVMDVANAVLDGTDAVMLSAETAAGQYPSETVAAMARVCLGAEKIPSINVSKHRLDVQFDNVEEAIAMSAMYAANHLKGVTAIITMTESGRTALMTSRISSGLPIFAMSRHERTLNLTALYRGVTPVHFDSANDGVAAASEAVNLLRDKGYLMSGDLVIVTQGDVMSTVGSTNTTRILTVE
>NZ_CP040107.1|WP_001056694.1|2288359_2289229_-|DNA-binding-transcriptional-regulator-HexR
MNMLEKIQSQLEHLSKSERKVAEVILASPDNAIHSSIAALALEANVSEPTVNRFCRSMDTRGFPDFKLHLAQSLANGTPYVNRNVNEDDSVESYTGKIFESAMATLDHVRHSLDKSAINRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVVYSDDIVLQRMSCMNCSDGDVVVLISHTGRTKNLVELAQLARENDAMVIALTSAGTPLAREATLAITLDVPEDTDIYMPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKESRFDKQLLNLSDDR
>NZ_CP040107.1|WP_000301737.1|2289566_2291042_+|glucose-6-phosphate-dehydrogenase
MAVTQTAQVCDLVIFGAKGDLARRKLLPSLYQLEKAGQLNPDTRIIGVGRADWDKAAYTKVVREALETFMKETIDEGLWDTLSARLDFCNLDVNDTAAFSRLGAMLDQKNRITINYFAMPPSTFGAICKGLGEAKLNAKPARVVMEKPLGTSLATSQEINDQVGEYFEECQVYRIDHYLGKETVLNLLALRFANSLFVNNWDNRTIDHVEITVAEEVGIEGRWGYFDKAGQMRDMIQNHLLQILCMIAMSPPSDLSADSIRDEKVKVLKSLRRIDRSNVREKTVRGQYTAGFAQGKKVPGYLEEEGANKSSNTETFVAIRVDIDNWRWAGVPFYLRTGKRLPTKCSEVVVYFKTPELNLFKESWQDLPQNKLTIRLQPDEGVDIQVLNKVPGLDHKHNLQITKLDLSYSETFNQTHLADAYERLLLETMRGIQALFVRRDEVEEAWKWVDSITEAWAMDNDAPKPYQAGTWGPVASVAMITRDGRSWNEFE
>NZ_CP040107.1|WP_001069467.1|2291276_2293088_+|phosphogluconate-dehydratase
MNPQLLRVTNRIIERSRETRSAYLARIEQAKTSTVHRSQLACGNLAHGFAACQPEDKASLKSMLRNNIAIITSYNDMLSAHQPYEHYPEIIRKALHEANAVGQVAGGVPAMCDGVTQGQDGMELSLLSREVIAMSAAVGLSHNMFDGALFLGVCDKIVPGLTMAALSFGHLPAVFVPSGPMASGLPNKEKVRIRQLYAEGKVDRMALLESEAASYHAPGTCTFYGTANTNQMVVEFMGMQLPGSSFVHPDSPLRDALTAAAARQVTRMTGNGNEWMPIGKMIDEKVVVNGIVALLATGGSTNHTMHLVAMARAAGIQINWDDFSDLSDVVPLMARLYPNGPADINHFQAAGGVPVLVRELLKAGLLHEDVNTVAGFGLSRYTLEPWLNNGELDWREGAEKSLDSNVIASFEQPFSHHGGTKVLSGNLGRAVMKTSAVPVENQVIEAPAVVFESQHDVMPAFEAGLLDRDCVVVVRHQGPKANGMPELHKLMPPLGVLLDRCFKIALVTDGRLSGASGKVPSAIHVTPEAYDGGLLAKVRDGDIIRVNGQTGELTLLVDEAELAAREPHIPDLSASRVGTGRELFSALREKLSGAEQGATCITF
>NZ_CP040107.1|WP_000800512.1|2293124_2293766_+|bifunctional-4-hydroxy-2-oxoglutarate-aldolase/2-dehydro-3-deoxy-phosphogluconate-aldolase
MKNWKTSAESILTTGPVVPVIVVKKLEHAVPMAKALVAGGVRVLEVTLRTECAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISPGLTEPLLKAATEGTIPLIPGISTVSELMLGMDYGLKEFKFFPAEANGGVKALQAIAGPFSQVRFCPTGGISPANYRDYLALKSVLCIGGSWLVPADALEAGDYDRITKLAREAVEGAKL

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Crispr_ID: NZ_CP040107_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040107_5

2481437-2481560

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040107_5

>merge|NZ_CP040107|5|2481437-2481560|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>NZ_CP040107|5|5|2481437-2481560|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040107.1\|WP_001070230.1\|2473524_2474151_+\|ferredoxin-like-protein	unknown	unknown	gnl\|CDD\|182135
NZ_CP040107.1\|WP_000181307.1\|2474171_2476274_+\|aldehyde-ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|236629
NZ_CP040107.1\|WP_001295403.1\|2470890_2472303_-\|pyruvate-kinase-PykF	unknown	unknown	gnl\|CDD\|181699
NZ_CP040107.1\|WP_000190982.1\|2489132_2490158_-\|HTH-type-transcriptional-repressor-PurR	unknown	unknown	gnl\|CDD\|236739
NZ_CP040107.1\|WP_000269501.1\|2488203_2489136_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
NZ_CP040107.1\|WP_000212652.1\|2480996_2481302_-\|monooxygenase	unknown	unknown	gnl\|CDD\|182975
NZ_CP040107.1\|WP_001069991.1\|2477653_2478439_+\|thiosulfate-reductase-cytochrome-B-subunit	unknown	unknown	gnl\|CDD\|184968
NZ_CP040107.1\|WP_000098902.1\|2485440_2486589_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
NZ_CP040107.1\|WP_000534283.1\|2481874_2483131_+\|AIDA-repeat-containing-protein	unknown	unknown	gnl\|CDD\|137602
NZ_CP040107.1\|WP_001174945.1\|2483171_2484545_-\|multidrug-efflux-MATE-transporter-MdtK	unknown	unknown	gnl\|CDD\|234981
NZ_CP040107.1\|WP_000102278.1\|2490456_2490546_+\|stress-response-protein-YnhF	unknown	unknown	unknown
NZ_CP040107.1\|WP_001302076.1\|2476286_2476925_+\|YdhW-family-putative-oxidoreductase-system-protein	unknown	unknown	gnl\|CDD\|182160
NZ_CP040107.1\|WP_000587574.1\|2478442_2479255_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182159
NZ_CP040107.1\|WP_000716940.1\|2479266_2480871_-\|FAD-NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|182134
NZ_CP040107.1\|WP_000493947.1\|2484759_2485401_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846
NZ_CP040107.1\|WP_001182346.1\|2486879_2488091_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182924
NZ_CP040107.1\|WP_000528342.1\|2472859_2473069_+\|fumarate-hydratase-FumD	unknown	unknown	gnl\|CDD\|182359
NZ_CP040107.1\|WP_001412436.1\|2476988_2477657_+\|4Fe-4S-dicluster-domain-containing-protein	unknown	unknown	gnl\|CDD\|274451
NZ_CP040107.1\|WP_000007283.1\|2492026_2492608_-\|superoxide-dismutase-[Fe]	unknown	unknown	gnl\|CDD\|182534
NZ_CP040107.1\|WP_000701046.1\|2490711_2491881_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371

Protein	Function_ID	Function_description	E-value
NZ_CP040107.1\|WP_001070230.1\|2473524_2474151_+\|ferredoxin-like-protein	gnl\|CDD\|182135	PRK09898, PRK09898, ferredoxin-like protein.	6.99609e-140
NZ_CP040107.1\|WP_000181307.1\|2474171_2476274_+\|aldehyde-ferredoxin-oxidoreductase	gnl\|CDD\|236629	PRK09849, PRK09849, putative oxidoreductase; Provisional.	0
NZ_CP040107.1\|WP_001295403.1\|2470890_2472303_-\|pyruvate-kinase-PykF	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
NZ_CP040107.1\|WP_000190982.1\|2489132_2490158_-\|HTH-type-transcriptional-repressor-PurR	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
NZ_CP040107.1\|WP_000269501.1\|2488203_2489136_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
NZ_CP040107.1\|WP_000212652.1\|2480996_2481302_-\|monooxygenase	gnl\|CDD\|182975	PRK11118, PRK11118, putative monooxygenase; Provisional.	5.72726e-63
NZ_CP040107.1\|WP_001069991.1\|2477653_2478439_+\|thiosulfate-reductase-cytochrome-B-subunit	gnl\|CDD\|184968	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional.	4.74994e-163
NZ_CP040107.1\|WP_000098902.1\|2485440_2486589_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
NZ_CP040107.1\|WP_000534283.1\|2481874_2483131_+\|AIDA-repeat-containing-protein	gnl\|CDD\|137602	PRK09945, PRK09945, hypothetical protein; Provisional.	0
NZ_CP040107.1\|WP_001174945.1\|2483171_2484545_-\|multidrug-efflux-MATE-transporter-MdtK	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
NZ_CP040107.1\|WP_001302076.1\|2476286_2476925_+\|YdhW-family-putative-oxidoreductase-system-protein	gnl\|CDD\|182160	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein.	1.56001e-121
NZ_CP040107.1\|WP_000587574.1\|2478442_2479255_+\|hypothetical-protein	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	5.65445e-174
NZ_CP040107.1\|WP_000716940.1\|2479266_2480871_-\|FAD-NAD(P)-binding-protein	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
NZ_CP040107.1\|WP_000493947.1\|2484759_2485401_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	2.24506e-123
NZ_CP040107.1\|WP_001182346.1\|2486879_2488091_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
NZ_CP040107.1\|WP_000528342.1\|2472859_2473069_+\|fumarate-hydratase-FumD	gnl\|CDD\|182359	PRK10292, PRK10292, fumarate hydratase FumD.	2.11502e-34
NZ_CP040107.1\|WP_001412436.1\|2476988_2477657_+\|4Fe-4S-dicluster-domain-containing-protein	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	5.84654e-75
NZ_CP040107.1\|WP_000007283.1\|2492026_2492608_-\|superoxide-dismutase-[Fe]	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	3.77321e-138
NZ_CP040107.1\|WP_000701046.1\|2490711_2491881_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	3.05036e-98

>NZ_CP040107.1|WP_000212652.1|2480996_2481302_-|monooxygenase
MATLLQLHFAFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTAQLKKLGVEEVVAKVFDVNEPLSQINQAKLA
>NZ_CP040107.1|WP_000716940.1|2479266_2480871_-|FAD-NAD(P)-binding-protein
MKKIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEASHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARKQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDLAVIATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFHRDNASEKLNITLMSRTGILPEADFYCPIPYEPLHIVTDQALNAEIQKGEYGLLDRVFRLIVEEIKFADPDWSQRIALESLNVDSFAQAWFAERKQRDQFDWAEKNLQEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYKMEINESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFPGLREQLQKTGDEIPDVGEDYTLQQPEDIRGRVAFGALPWLMHDQPFVQGLTACAEIGEAMARAVVKPASRARRRLSFD
>NZ_CP040107.1|WP_000587574.1|2478442_2479255_+|hypothetical-protein
MIITRADLREWRIGAVMYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLADENFAHQEVSSMQKLATDPGERAFCSQFARSDDHARIGCCEDNARIATAGYAAQIASMGYSVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRIANTGMRVRVCTLGKRCHVASNGDLVQIASFGANARIANSGDNVHIIASGENSTVVSTGVVDSIILGPGGSAALAYHDGERVRFAVAIEGENNIRAGVRYRLNEQHQFVEC
>NZ_CP040107.1|WP_001069991.1|2477653_2478439_+|thiosulfate-reductase-cytochrome-B-subunit
MNPSQHAEQFQSQLANYVPQFTPEFWPVWLIIAGVLLVGMWLVLGLHALLRARGVKKSATDHGERIYLYSKAVRLWHWSNALLFVLLLASGLINHFALVGATAVKSLVAVHEVCGFLLLACWLGFVLINGVGGNGHHYRIRRQGWLERAAKQTRFYLFGIMQGEEHPFPATTQSKFNPLQQVAYVGVMYGLLPLLLLTGLLCLYPQAVGDVFPGVRYWLLQAHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH
>NZ_CP040107.1|WP_001412436.1|2476988_2477657_+|4Fe-4S-dicluster-domain-containing-protein
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKEVRYAMIHDESRCNGCNICARACRKTNHAPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTGASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGREDSPEIQAWLQDNKYYQYQLPGAGKPHLYRRFGQHLIKKENV
>NZ_CP040107.1|WP_001302076.1|2476286_2476925_+|YdhW-family-putative-oxidoreductase-system-protein
MNHQDELPLAKVSEVDEAKRQWLQGMRHPVDTVTEPEPAEILAEFIRQHSVAGQLVARAVFLSPPYSVAEEELSVLLENIKQNGDYADIACMTGSQDDYYYSTQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEAAIAAMDVAPEYADIRQVESSTAVLYLFSERFMTYGKAYGLCEWFEVEQFQNP
>NZ_CP040107.1|WP_000181307.1|2474171_2476274_+|aldehyde-ferredoxin-oxidoreductase
MTNGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKIMYDEVPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQMKFAGYDVIIIEGKAKSPVWLKIKDDKVSLEKADFLWGKGTRATTEEICRLTSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKRLNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPPGNQNTVGFRTYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPSTGGNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYSKGVFKRVLPAEEYAEIRWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAECWNLGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEEMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRNEHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGCPTRETLQRLGLEDIAADLAAHNLLPA
>NZ_CP040107.1|WP_001070230.1|2473524_2474151_+|ferredoxin-like-protein
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQKEGCITVDHKRCIGCSACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV
>NZ_CP040107.1|WP_000528342.1|2472859_2473069_+|fumarate-hydratase-FumD
MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAMETVINALVK
>NZ_CP040107.1|WP_001295403.1|2470890_2472303_-|pyruvate-kinase-PykF
MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL
>NZ_CP040107.1|WP_000534283.1|2481874_2483131_+|AIDA-repeat-containing-protein
MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDQGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPGGEASNCEINQGGVFMLAGKANDTLLADGTMNNLGGEDSDTIVENGAIYRLGTDGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGADLQQSTITVQQGGVLILDGSTVKGDSVTFSIGNINLNGGKLWLITGAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVNGDIRVQITDASRQTLCNALKLQPDEDGIGATLQPA
>NZ_CP040107.1|WP_001174945.1|2483171_2484545_-|multidrug-efflux-MATE-transporter-MdtK
MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRYLQRLPSAIILQRASR
>NZ_CP040107.1|WP_000493947.1|2484759_2485401_+|riboflavin-synthase
MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA
>NZ_CP040107.1|WP_000098902.1|2485440_2486589_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIAGARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTILLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFTVVDRNLKPEGIFLLHTIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFVAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR
>NZ_CP040107.1|WP_001182346.1|2486879_2488091_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLLWGPLSDRYGRKPVLLIGLTIFALGSLGMLWVENAAMLLVLRFVQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWLKPTTKARNNSQDGLTFTDLLRSKTYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLVLFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEVGCQNHGNAEVAHSESH
>NZ_CP040107.1|WP_000269501.1|2488203_2489136_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRVVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALELENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLREPEETPATGD
>NZ_CP040107.1|WP_000190982.1|2489132_2490158_-|HTH-type-transcriptional-repressor-PurR
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>NZ_CP040107.1|WP_000102278.1|2490456_2490546_+|stress-response-protein-YnhF
MSTDLKFSLVTTIIVLGLIVAVGLTAALH
>NZ_CP040107.1|WP_000701046.1|2490711_2491881_+|MFS-transporter
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPDYMTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFFSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNKFGAAISMAVWGAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPETVCVANS
>NZ_CP040107.1|WP_000007283.1|2492026_2492608_-|superoxide-dismutase-[Fe]
MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA

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Crispr_ID: NZ_CP040107_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040107_6

3195490-3195603

Orphan

Consensus_repeat	Method
TTTTTTTACCTGATTCGGGTAAA	PILER-CR

2 spacers

The CRISPR arrays of NZ_CP040107_6

>merge|NZ_CP040107|6|3195490-3195603|PILER-CR
TTTACCTGATTCGGGTAAACGCCTTTACCTGATTTGGGTAAACTTTTTTTACCTGATTCAGGTAAATTTACCTCTTTCAGGTAAACTTTATTTTTCTTACCTGATTCGGGTAAT

>NZ_CP040107|6|2|3195490-3195603|PILER-CR
TTTACCTGATTCGGGTAAACGCC	TTTACCTGATTTGGGTAAACTTTT
TTTACCTGATTCAGGTAAATTTA	CCTCTTTCAGGTAAACTTTATTTTT
CTTACCTGATTCGGGTAAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040107.1\|WP_001302833.1\|3193439_3193562_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040107.1\|WP_000145915.1\|3194026_3194329_-\|protein-ren	unknown	unknown	unknown
NZ_CP040107.1\|WP_000741454.1\|3196177_3197320_+\|phage-integrase-Arm-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|271181
NZ_CP040107.1\|WP_001301861.1\|3200033_3201140_+\|tRNA-2-thiouridine(34)-synthase-MnmA	unknown	unknown	gnl\|CDD\|234664
NZ_CP040107.1\|WP_000224907.1\|3190728_3190899_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182029
NZ_CP040107.1\|WP_001053040.1\|3190898_3191354_-\|recombination-protein-NinB	unknown	unknown	gnl\|CDD\|182057
NZ_CP040107.1\|WP_000476093.1\|3199518_3199980_+\|phosphatase-NudJ	unknown	unknown	gnl\|CDD\|239647
NZ_CP040107.1\|WP_001265474.1\|3203359_3204031_+\|two-component-system-response-regulator-PhoP	unknown	unknown	gnl\|CDD\|182755
NZ_CP040107.1\|WP_000971093.1\|3189949_3190090_-\|YlcG-family-protein	unknown	unknown	unknown
NZ_CP040107.1\|WP_001248690.1\|3198855_3199509_+\|23S-rRNA-pseudouridine(2457)-synthase-RluE	unknown	unknown	gnl\|CDD\|183115
NZ_CP040107.1\|WP_000709077.1\|3191855_3193382_-\|recombinase-family-protein	unknown	unknown	gnl\|CDD\|238206
NZ_CP040107.1\|WP_000735407.1\|3204030_3205491_+\|two-component-system-sensor-histidine-kinase-PhoQ	unknown	unknown	gnl\|CDD\|182754
NZ_CP040107.1\|WP_001070446.1\|3193626_3193959_-\|SMR-family-multidrug-efflux-protein-EmrE	unknown	unknown	gnl\|CDD\|137367
NZ_CP040107.1\|WP_000088657.1\|3195951_3196188_+\|excisionase	unknown	unknown	unknown
NZ_CP040107.1\|WP_000423729.1\|3201820_3203191_+\|adenylosuccinate-lyase	unknown	unknown	gnl\|CDD\|236452
NZ_CP040107.1\|WP_001099695.1\|3190086_3190449_-\|crossover-junction-endodeoxyribonuclease-RusA	unknown	unknown	gnl\|CDD\|182075
NZ_CP040107.1\|WP_000788869.1\|3194325_3195027_-\|Replication-protein-P	unknown	unknown	gnl\|CDD\|369163
NZ_CP040107.1\|WP_000774504.1\|3190445_3190736_-\|DUF1364-domain-containing-protein	unknown	unknown	gnl\|CDD\|377777
NZ_CP040107.1\|WP_000444477.1\|3197433_3198684_-\|NADP-dependent-isocitrate-dehydrogenase	unknown	unknown	gnl\|CDD\|180792
NZ_CP040107.1\|WP_001301618.1\|3201175_3201817_+\|high-frequency-lysogenization-protein-HflD	unknown	unknown	gnl\|CDD\|234690

Protein	Function_ID	Function_description	E-value
NZ_CP040107.1\|WP_000224907.1\|3190728_3190899_-\|hypothetical-protein	gnl\|CDD\|182029	PRK09689, PRK09689, prophage protein NinE; Provisional.	4.47204e-27
NZ_CP040107.1\|WP_001053040.1\|3190898_3191354_-\|recombination-protein-NinB	gnl\|CDD\|182057	PRK09741, PRK09741, hypothetical protein; Provisional.	1.22245e-92
NZ_CP040107.1\|WP_000741454.1\|3196177_3197320_+\|phage-integrase-Arm-DNA-binding-domain-containing-protein	gnl\|CDD\|271181	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase. Lambda-type integrases catalyze site-specific integration and excision of temperate bacteriophages and other mobile genetic elements to and from the bacterial host chromosome. They are tyrosine-based site-specific recombinase and belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The phage lambda integrase can bridge two different and well-separated DNA sequences called arm- and core-sites. The C-terminal domain binds, cleaves and re-ligates DNA strands at the core-sites, while the N-terminal domain is largely responsible for high-affinity binding to the arm-type sites.	8.09219e-49
NZ_CP040107.1\|WP_001301861.1\|3200033_3201140_+\|tRNA-2-thiouridine(34)-synthase-MnmA	gnl\|CDD\|234664	PRK00143, mnmA, tRNA-specific 2-thiouridylase MnmA; Reviewed.	0
NZ_CP040107.1\|WP_000476093.1\|3199518_3199980_+\|phosphatase-NudJ	gnl\|CDD\|239647	cd03675, Nudix_Hydrolase_2, Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are determined by the N-terminal extension or by residues in variable loop regions. Mechanistically, substrate hydrolysis occurs by a nucleophilic substitution reaction, with variation in the numbers and roles of divalent cations required.	5.27812e-69
NZ_CP040107.1\|WP_000423729.1\|3201820_3203191_+\|adenylosuccinate-lyase	gnl\|CDD\|236452	PRK09285, PRK09285, adenylosuccinate lyase; Provisional.	0
NZ_CP040107.1\|WP_001070446.1\|3193626_3193959_-\|SMR-family-multidrug-efflux-protein-EmrE	gnl\|CDD\|137367	PRK09541, emrE, EmrE family multidrug efflux SMR transporter.	1.98145e-62
NZ_CP040107.1\|WP_001248690.1\|3198855_3199509_+\|23S-rRNA-pseudouridine(2457)-synthase-RluE	gnl\|CDD\|183115	PRK11394, PRK11394, 23S rRNA pseudouridine(2457) synthase RluE.	3.28772e-150
NZ_CP040107.1\|WP_000709077.1\|3191855_3193382_-\|recombinase-family-protein	gnl\|CDD\|238206	cd00338, Ser_Recombinase, Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are proteins with N-terminal DNA binding domains similar to IS607- and IS1535-transposases from Helicobacter and Mycobacterium.	1.58922e-25
NZ_CP040107.1\|WP_000735407.1\|3204030_3205491_+\|two-component-system-sensor-histidine-kinase-PhoQ	gnl\|CDD\|182754	PRK10815, PRK10815, two-component system sensor histidine kinase PhoQ.	0
NZ_CP040107.1\|WP_001265474.1\|3203359_3204031_+\|two-component-system-response-regulator-PhoP	gnl\|CDD\|182755	PRK10816, PRK10816, two-component system response regulator PhoP.	2.17564e-165
NZ_CP040107.1\|WP_001099695.1\|3190086_3190449_-\|crossover-junction-endodeoxyribonuclease-RusA	gnl\|CDD\|182075	PRK09786, PRK09786, endodeoxyribonuclease RUS; Reviewed.	2.64855e-71
NZ_CP040107.1\|WP_000788869.1\|3194325_3195027_-\|Replication-protein-P	gnl\|CDD\|369163	pfam06992, Phage_lambda_P, Replication protein P. This family consists of several Bacteriophage lambda replication protein P like proteins. The bacteriophage lambda P protein promoters replication of the phage chromosome by recruiting a key component of the cellular replication machinery to the viral origin. Specifically, P protein delivers one or more molecules of Escherichia coli DnaB helicase to a nucleoprotein structure formed by the lambda O initiator at the lambda replication origin.	6.84926e-83
NZ_CP040107.1\|WP_000774504.1\|3190445_3190736_-\|DUF1364-domain-containing-protein	gnl\|CDD\|377777	pfam07102, DUF1364, Protein of unknown function (DUF1364). This family consists of several bacterial and phage proteins of around 95 residues in length. The function of this family is unknown.	5.39804e-47
NZ_CP040107.1\|WP_000444477.1\|3197433_3198684_-\|NADP-dependent-isocitrate-dehydrogenase	gnl\|CDD\|180792	PRK07006, PRK07006, isocitrate dehydrogenase; Reviewed.	0
NZ_CP040107.1\|WP_001301618.1\|3201175_3201817_+\|high-frequency-lysogenization-protein-HflD	gnl\|CDD\|234690	PRK00218, PRK00218, lysogenization regulator HflD.	1.16291e-113

>NZ_CP040107.1|WP_000788869.1|3194325_3195027_-|Replication-protein-P
MKNIAAQMVNFDREQMRRIANNMPEQYDEKPQVQQVAQIINGVFSQLLATFPASLANRDQNELNEIRRQWVLAFRENGITTMEQVNAGMRVARRQNRPFLPSPGQFVAWCREEASVIAGLPNVSELVDMVYEYCRKRGLYPDAESYPWKSNAHYWLVTNLYQNMRANALTDAELRRKAADELTCMTARINRGETIPEPVKQLPVMGGRPLNRAQALAKIAEIKAKFGLKGASV
>NZ_CP040107.1|WP_000145915.1|3194026_3194329_-|protein-ren
MTGKEAIIHYLGTHKSFCAQDVAAVTGATVTSINQAAAKMARAGILVVDGKVWRTVYYRFATREEREGKVSTNLIFKECRQSAAMKRVLRVYKRTSMGTQ
>NZ_CP040107.1|WP_001070446.1|3193626_3193959_-|SMR-family-multidrug-efflux-protein-EmrE
MNPYIYLGGAILAEVIGTTLMKFSEGFTRLWPSVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAVIGMMLICAGVLVINLLSRSTPH
>NZ_CP040107.1|WP_001302833.1|3193439_3193562_-|hypothetical-protein
MFLVFVYSFVPSRLLRKQIAIRLLLYIQDSVIVIVFLNKN
>NZ_CP040107.1|WP_000709077.1|3191855_3193382_-|recombinase-family-protein
MKKAIAYMRFSSPGQMSGDSLNRQRRLIAEWLKVNSDYYLDTITYEDLGLSAFKGKHAQSGAFSEFLDAIEHGYILPGTTLLVESLDRLSREKVGEAIERLKLILNHGIDVITLCDNTVYNIDSLNEPYSLIKAILIAQRANEESEIKSSRVKLSWKKKRQDALESGTIMTASCPRWLSLDDKRTAFVPDPDRVKTIELIFKLRMERRSLNAIAKYLNDHAVKNFSGKESAWGPSVIEKLLANKALIGICVPSYRARGKGISEIAGYYPRVISDDLFYAVQEIRLAPFGISNSSKNPMLINLLRTVMKCEACGNTMIVHAVSGSLHGYYVCPMRRLHRCDRPSIKRDLVDYNIINELLFNCSKIQPVENKKDANETLELKIIELQMKINNLIVALSVAPEVTAIAEKIRLLDKELRRALVSLKTLKSKGVNSFSDFYAIDLTSKNGRELCRTLAYKIFEKIIINTDNKTCDIYFMNGIVFKHYPLMKVISAQQAISALKYMVDGEVYF
>NZ_CP040107.1|WP_001053040.1|3190898_3191354_-|recombination-protein-NinB
MNLPQDGIKLHRGNFTAVGQQIQTYLEDGKCFRMVLKPWRERRSLSQNALSHMWYSEISEYLISRGKSFATSAWVKDALKHTYLGYETKDLVDVVTGEITTIQSLRHTSDLGTGEMYVFLCKVEAWAMNIGCHLTIPQSCEFQLLRDKQEA
>NZ_CP040107.1|WP_000224907.1|3190728_3190899_-|hypothetical-protein
MATPLIRVMNGHIYKVPNRRKRKPELKPSEIPTLLGYTASLVDKKWLRLAARRNHG
>NZ_CP040107.1|WP_000774504.1|3190445_3190736_-|DUF1364-domain-containing-protein
MADLRKAARSRECQVRIPGVCNGNPETSVLAHIRLTGLCGTGTKPPDLIATIACSACHDEIDRRTHFVDAAYAKECALEGMARTQVIWLKEGVIKA
>NZ_CP040107.1|WP_001099695.1|3190086_3190449_-|crossover-junction-endodeoxyribonuclease-RusA
MNTYSITLPWPPSNNRYYRHNRGRTHISAEGQAYRDNVARIIKGSMLDIGLAMPVKIRIECHMPDRRRRDLDNLQKAAFDALTKAGFWLDDAQVVDYRVVKMPVTKGGKLELTITELGNE
>NZ_CP040107.1|WP_000971093.1|3189949_3190090_-|YlcG-family-protein
MMFESYMAERLRHRWMRLRLYRFPGSVLTDYRILKNYAKTLKGAAA
>NZ_CP040107.1|WP_000088657.1|3195951_3196188_+|excisionase
MSRLITLRDWAKEEFGDLAPSERVLKKYAQGKMMAPPTIKVGRYWMIDRNSRFVGTLAEPQLPINANPKLQRIIADGC
>NZ_CP040107.1|WP_000741454.1|3196177_3197320_+|phage-integrase-Arm-DNA-binding-domain-containing-protein
MAASPRSHKISIPNLYCKLDKRTGKVYWQYKHPLSGRFHSLGTDENEAKQVATEANTIIAEQRTRQILSVNERLERMKGRRSDITVTEWLDKYNSIQEDRLQHNELRPNSYRQKGKPIRLFREHCGMQHLKDITALDIAEIIDAVKAEGHNRMAQVVRMVLIDVFKEAQHAGHVPPGFNPAQATKQPRNRVNRQRLSLPEWQAIFDSVSRRQPYLKCGMLLALVTGQRLSDICNLKFSDIWDDMLHITQEKTGSKLAIPLNLKCDALNITLREVISQCRDAVVSKYLVHYRHTTSQANRGDQVSANTLTTAFKKAREKCGIKWEQGTAPTFHEQRSLSERLYREQGLDTQKLLGHKSRKMTDRYNDDRGKDWIIVDIKTA
>NZ_CP040107.1|WP_000444477.1|3197433_3198684_-|NADP-dependent-isocitrate-dehydrogenase
MESKVVVPAQGKKITLQNGKLNVPENPIIPYIEGDGIGVDVTPAMLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAETLDLIREYRVAIKGPLTTPVGGGIRSLNVALRQELDLYICLRPVRYYQGTPSPVKHPELTDMVIFRENSEDIYAGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKRLVRAAIEYAIANDRDSVTLVHKGNIMKFTEGAFKDWGYELAREEFGGELIDGGPWLKVKNPNTGKEIVIKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECALFEATHGTAPKYAGQDKVNPGSIILSAEMMLRHMGWTEAADLIVKGMEGAINAKTVTYDFERLMEGAKLLKCSEFGDAIIKNM
>NZ_CP040107.1|WP_001248690.1|3198855_3199509_+|23S-rRNA-pseudouridine(2457)-synthase-RluE
MRQFIISENTMQKTSFRNHQVKRFSSQRSTRRKPENQPTRVILFNKPYDVLPQFTDEAGRKTLKEFIPVQGVYAAGRLDRDSEGLLVLTNNGALQARLTQPGKRTGKIYYVQVEGIPTQDALEALRNGVTLNDGPTLPAGAELVDEPAWLWPRNPPIRERKSIPTSWLKITLYEGRNRQVRRMTAHVGFPTLRLIRYAMGDYSLDNLANGEWREATE
>NZ_CP040107.1|WP_000476093.1|3199518_3199980_+|phosphatase-NudJ
MFKPHVTVACVVHAEGKFLVVEETINGKALWNQPAGHLEADETLVEAAARELWEETGISAQPQHFIRMHQWIAPDKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPLVAESIRCYQSGQRYPLEMIGDFNWPFTKGVI
>NZ_CP040107.1|WP_001301861.1|3200033_3201140_+|tRNA-2-thiouridine(34)-synthase-MnmA
MSETAKKVIVGMSGGVDSSVSAWLLQQQGYQVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFLAEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYVRRADVDGKSRLLRGLDSNKDQSYFLYTLSHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGERKFREFLGRYLPAQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKEGTEEPWYVVDKDVENNILIVAQGHEHPRLMSVGLIAQQLHWVDREPFTGTMRCTVKTRYRQTDIPCTVKALDDDRIEVIFDEPVAAVTPGQSAVFYNGEVCLGGGIIEQRLPLPI
>NZ_CP040107.1|WP_001301618.1|3201175_3201817_+|high-frequency-lysogenization-protein-HflD
MAKNYYDITLALAGICQSARLVQQLAHQGHCDADALHVSLNSIIDMNPSSTLAVFGGSEANLRVGLETLLGVLNASSRQGLNAELTRYTLSLMVLKRKLSSAKGALDTLGNRINGLQRQLEHFDLQSETLMSAMAAIYVDVISPLGPRIQVTGSPAVLQSPQVQAKVRATLLAGIRAAVLWHQVGGGRLQLMFSRNRLTTQAKQILAHLTPEL
>NZ_CP040107.1|WP_000423729.1|3201820_3203191_+|adenylosuccinate-lyase
MELSSLTAVSPVDGRYGDKVSALRGIFSEYGLLKFRVQVEVRWLQKLAAHAAIKEVPAFAADAIGYLDAIVANFSEEDAARIKTIERTTNHDVKAVEYFLKEKVAEIPELHAVSEFIHFACTSEDINNLSHALMLKTARDEVILPYWRQLIDGIKDLAVQYRDIPLLSRTHGQPATPSTIGKEMANVAYRMERQYRQLNQVEILGKINGAVGNYNAHIAAYPEVDWHQFSEEFVTSLGIQWNPYTTQIEPHDYIAELFDCVARFNTILIDFDRDVWGYIALNHFKQKTIAGEIGSSTMPHKVNPIDFENSEGNLGLSNAVLQHLASKLPVSRWQRDLTDSTVLRNLGVGIGYALIAYQSTLKGVSKLEVNRDHLLDELDHNWEVLAEPIQTVMRRYGIEKPYEKLKELTRGKRVDAEGMKQFIDGLALPEEEKARLKAMTPANYIGRAITMVDELK
>NZ_CP040107.1|WP_001265474.1|3203359_3204031_+|two-component-system-response-regulator-PhoP
MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHLPDIAIVDLGLPDEDGLSLICRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRNSGLASQVISLPPFQVDLSRRELSINDEVIKLTAFEYTIMETLIRNNGKVVSKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPQEVITTVRGQGYLFELR
>NZ_CP040107.1|WP_000735407.1|3204030_3205491_+|two-component-system-sensor-histidine-kinase-PhoQ
MKKLLRLFFPLSLRVRFLLATAAVVLVLSLAYGMVALIGYSVSFDKTTFRLLRGESNLFYTLAKWENNKLHVELPENIDKQSPTMTLIYDENGQLLWAQRDVPWLMKMIQPDWLKSNGFHEIEADVNDTSLLLSGDHSIQQQLQEVREDDDDAEMTHSVAVNVYPATSRMPKLTIVVVDTIPVELKSSYMVWSWFIYVLSANLLLVIPLLWVAAWWSLRPIEALAKEVRELEEHNRELLNPATTRELTSLVRNLNRLLKSERERYDKYRTTLTDLTHSLKTPLAVLQSTLRSLRSEKMSVSDAEPVMLEQISRISQQIGYYLHRASMHGGTLLSRELHPVAPLLDNLTSALNKVYQRKGVNISLDISPEISFVGEQNDFVEVMGNVLDNACKYCLEFVEISARQTDEHLYIVVEDDGPGIPLSKREVIFDRGQRVDTLRPGQGVGLAVAREITKQYEGKIVAGESMLGGARMEVIFGRQHSTPKDE

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Crispr_ID: NZ_CP040107_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040107_7

4693316-4693450

Orphan

Consensus_repeat	Method
GGCCTACACGCTGCAATTTTGTAGGCCGGATAAGCAACGCGCATCCGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040107_7

>merge|NZ_CP040107|7|4693316-4693450|CRISPRCasFinder
GGCCTACACGCTGCAATTTTGTAGGCCGGATAAGCAACGCGCATCCGGCATTCAGCGCCTGATGCGACGCTGACGCGTCTTATCTGGCCTACACGCTGCGATTTTGTAGGCCGGATAAGCAACGCGCATCCGGCA

>NZ_CP040107|7|6|4693316-4693450|CRISPRCasFinder
GGCCTACACGCTGCAATTTTGTAGGCCGGATAAGCAACGCGCATCCGGCA	TTCAGCGCCTGATGCGACGCTGACGCGTCTTATCT
GGCCTACACGCTGCGATTTTGTAGGCCGGATAAGCAACGCGCATCCGGCA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040107.1\|WP_000868321.1\|4683704_4684274_-\|T3SS-effector-EspY2	unknown	unknown	unknown
NZ_CP040107.1\|WP_000151715.1\|4691761_4693264_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
NZ_CP040107.1\|WP_001138626.1\|4681817_4683476_+\|DNA-binding-transcriptional-regulator-SgrR	unknown	unknown	gnl\|CDD\|184188
NZ_CP040107.1\|WP_001301693.1\|4684645_4685629_+\|thiamine-ABC-transporter-substrate-binding-subunit	unknown	unknown	gnl\|CDD\|236883
NZ_CP040107.1\|WP_001148407.1\|4687983_4688748_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
NZ_CP040107.1\|WP_001304001.1\|4700743_4701496_-\|pentapeptide-repeat-containing-protein	unknown	unknown	unknown
NZ_CP040107.1\|WP_001065380.1\|4707539_4708361_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
NZ_CP040107.1\|WP_000746183.1\|4702860_4705215_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
NZ_CP040107.1\|WP_000916267.1\|4687198_4687897_+\|thiamine-ABC-transporter-ATP-binding-protein-ThiQ	unknown	unknown	gnl\|CDD\|182716
NZ_CP040107.1\|WP_001117011.1\|4696748_4699655_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
NZ_CP040107.1\|WP_001200573.1\|4701790_4702606_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
NZ_CP040107.1\|WP_001300811.1\|4688833_4689712_-\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
NZ_CP040107.1\|WP_000235663.1\|4685604_4687215_+\|thiamine/thiamine-pyrophosphate-ABC-transporter-permease-ThiP	unknown	unknown	gnl\|CDD\|181853
NZ_CP040107.1\|WP_000800457.1\|4705267_4706554_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
NZ_CP040107.1\|WP_000241259.1\|4706553_4707543_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
NZ_CP040107.1\|WP_000525186.1\|4699666_4700326_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
NZ_CP040107.1\|WP_000035699.1\|4694233_4696585_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
NZ_CP040107.1\|WP_000888654.1\|4693463_4694159_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
NZ_CP040107.1\|WP_000951872.1\|4690050_4691751_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
NZ_CP040107.1\|WP_001248768.1\|4681597_4681729_-\|glucose-uptake-inhibitor-SgrT	unknown	unknown	gnl\|CDD\|374203

Protein	Function_ID	Function_description	E-value
NZ_CP040107.1\|WP_001138626.1\|4681817_4683476_+\|DNA-binding-transcriptional-regulator-SgrR	gnl\|CDD\|184188	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR.	0
NZ_CP040107.1\|WP_000151715.1\|4691761_4693264_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
NZ_CP040107.1\|WP_001301693.1\|4684645_4685629_+\|thiamine-ABC-transporter-substrate-binding-subunit	gnl\|CDD\|236883	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional.	0
NZ_CP040107.1\|WP_001148407.1\|4687983_4688748_-\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	1.79494e-49
NZ_CP040107.1\|WP_001065380.1\|4707539_4708361_+\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	2.27697e-148
NZ_CP040107.1\|WP_000746183.1\|4702860_4705215_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
NZ_CP040107.1\|WP_000916267.1\|4687198_4687897_+\|thiamine-ABC-transporter-ATP-binding-protein-ThiQ	gnl\|CDD\|182716	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ.	5.93317e-163
NZ_CP040107.1\|WP_001117011.1\|4696748_4699655_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
NZ_CP040107.1\|WP_001200573.1\|4701790_4702606_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	1.09407e-169
NZ_CP040107.1\|WP_001300811.1\|4688833_4689712_-\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
NZ_CP040107.1\|WP_000235663.1\|4685604_4687215_+\|thiamine/thiamine-pyrophosphate-ABC-transporter-permease-ThiP	gnl\|CDD\|181853	PRK09433, thiP, thiamine transporter membrane protein; Reviewed.	0
NZ_CP040107.1\|WP_000800457.1\|4705267_4706554_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
NZ_CP040107.1\|WP_000241259.1\|4706553_4707543_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
NZ_CP040107.1\|WP_000525186.1\|4699666_4700326_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	5.25024e-158
NZ_CP040107.1\|WP_000035699.1\|4694233_4696585_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
NZ_CP040107.1\|WP_000888654.1\|4693463_4694159_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	3.528e-179
NZ_CP040107.1\|WP_000951872.1\|4690050_4691751_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
NZ_CP040107.1\|WP_001248768.1\|4681597_4681729_-\|glucose-uptake-inhibitor-SgrT	gnl\|CDD\|374203	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT.	0.00111324

>NZ_CP040107.1|WP_000151715.1|4691761_4693264_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPETLRQVTQHAEHVVKALNTEAKLPCKLVLKPLGTTPDEITAICRDANYDDRCAGLVVWLHTFSPAKMWINGLTMLNKPLLQFHTQFNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKQAHERIGSWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDVNALVDEYESCYTMTPATQIHGEKRQNVLEAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFEKGNDLVLGSHMLEVCPSIAAEEKPILDVQHLGIGGKDDPARLIFNTQTGPAIVASLIDLGDRYRLLVNCIDTVKTPHSLPKLPVANALWKAQPDLPTASEAWILAGGAHHTVFSHALNLNDMRQFAEMHDIEITVIDNDTRLPAFKDALRWNEVYYGFRR
>NZ_CP040107.1|WP_000951872.1|4690050_4691751_+|ribulokinase
MAIAIGLDFGSDSVRALAVDCTTGEEIATSVEWYPRWQKGQFCDAPNNQFRHHPRDYIESMEAALKTVLAELSVEQRAAVVGIGVDSTGSTPAPIDADGNVLALRPEFAENPNAMFVLWKDHTAVEEAEEITRLCHAPGNVDYSRYIGGIYSSEWFWAKILHVTRQDSAVAQSAASWIELCDWVPALLSGTTRPQDIRRGRCSAGHKSLWHESWGGLPPASFFDELDPILNRHLPSPLFTDTWTADIPVGTLCPEWAQRLGLPESVVISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKQSVGERAVKGICGQVDGSVVPGFIGLEAGQSAFGDIYAWFGRVLGWPLEQLAAQHPELKEQIDASQKQLLPALTEAWAKNPSLDHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPLLFGGLIAATAFGARAIMECFTDQGIAVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAKVHADIPSAQQKMASAVEKTLQPRSEQAQRFEQLYRRYQQWAMSAEQHYLPTSAPAQAAQAVPTL
>NZ_CP040107.1|WP_001300811.1|4688833_4689712_-|arabinose-operon-transcriptional-regulator-AraC
MAEAQNDPLLPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMKGYILNLTIRGQGVVKNQGREFVCRPGDILLFPPGEIHHYGRHPEAREWYHQWVYFRPRAYWHEWLNWPSIFANTGFFRPDEAHQPHFSDLFGQIINAGQGEGRYSELLAINLLEQLLLRRMEAINESLHPPMDNRVREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRAGCEEKVNDVAVKLS
>NZ_CP040107.1|WP_001148407.1|4687983_4688748_-|DedA-family-protein
MQALLEHFITQSTVYSLMAVVLVAFLESLALVGLILPGTVLMAGLGALIGSGELSFWHAWLAGIVGCLLGDWISFWLGWRFKKPLHRWSFLKKNKALLDKTEHALHQHSMFTILVGRFVGPTRPLVPMVAGMLDLPVAKFITPNIIGCLLWPPFYFLPGILAGAAIDIPAGMQSGEFKWLLLATAVFLWVGGWLCWRLWRSGKATDRLSHYLSRGRLLWLTPLISAIGVVALVVLVRHPLMPVYIDILRKVVGV
>NZ_CP040107.1|WP_000916267.1|4687198_4687897_+|thiamine-ABC-transporter-ATP-binding-protein-ThiQ
MLKLTDITWLYHHLPMRFSLTVERGEQVAILGPSGAGKSTLLNLIAGFLTPASGALTIDGVDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAVQQEKMHAIARQMGIDNLMARLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSTSCQQQKMTLLMVSHSVEDAARIATRSVVVADGRIAWQGMTNELLSGKASASALLGITG
>NZ_CP040107.1|WP_000235663.1|4685604_4687215_+|thiamine/thiamine-pyrophosphate-ABC-transporter-permease-ThiP
MATRRQPLIPGWLIPGVSAATLVVAVALAAFLALWWNAPQGDWSAVWQDSYLWHVVRFSFWQAFLSALLSVVPAIFLARALYRRRFPGRLALLRLCAMTLILPVLVAVFGILSVYGRQGWLASLCQSLGLEWTFSPYGLQGILLAHVFFNLPMASRLLLQALENIPGEQRQLAAQLGMRGWHFFRFVEWPWLRRQIPPVTALIFMLCFASFATVLSLGGGPQATTIELAIYQALSYDYDPARAAMLALIQMVCCLGLVLLSQRLSKAIAPGTTLLQGWRDPDDRLHSRICDTMLIVLALLLLLPPLLAVIVDGVNRQLPEVLAQPVLWQALWTSLRIALAAGVLCVVLTMMLLWSSRELRARQKMLAGQALEMSGMLILAMPGIVLATGFFLLLNNTIGLPQSADGIVIFTNALMAIPYALKVLENPMRDITARYSMLCQSLGIEGWSRLKVVELRALKRPLAQALAFACVLSIGDFGVVALFGNDDFRTLPFYLYQQIGSYRSQDGAVTALILLLLCFLLFSVIEKIPGRNVKTD
>NZ_CP040107.1|WP_001301693.1|4684645_4685629_+|thiamine-ABC-transporter-substrate-binding-subunit
MLKKCLPLLLLCTAPVFAKPVLTVYTYDSFAADWGPGPVVKKAFEADCNCELKLVALEDGVSLLNRLRMEGKNSKADVVLGLDNNLLDAASKTGLFAKSGVAADAVNVPGGWNNDIFVPFDYGYFAFVYDKNKLKNPPQSLKELVESDQNWRVIYQDPRTSTPGLGLLLWMQKVYGDDAPQAWQKLAKKTVTVTKGWSEAYGLFLKGESDLVLSYTTSPAYHILEEKKDNYAAANFSEGHYLQVEVAARTAASKQPELAQKFLQFMVSPAFQNAIPTGNWMYPVANVTLPAGFEKLTKPATTLEFTPAEVAAQRQAWISEWQRAVSR
>NZ_CP040107.1|WP_000868321.1|4683704_4684274_-|T3SS-effector-EspY2
MKVRNPEQISIPASNTTKDPGLTNSQIIRMANLVKKTENMNIFEELWETLRNLFQSDKHSQTAARQILKDAFYFQNSDDYSKYFTGAVDGKARDKLTHWLIKFNELKEYAKDPENMAAKASLSPEGTLCVSFFIGDEAIFTLELQLKKSTRTGGIDLSNAYFNGVVICGIDCLEVDLSNAETNNSRWYD
>NZ_CP040107.1|WP_001138626.1|4681817_4683476_+|DNA-binding-transcriptional-regulator-SgrR
MPSARLQQQFIRLWQCCEGKSQDTTLNELAALLSCSRRHMRTLLNTMQDRGWLTWEAEVGRGKRSRLTFLYTGLALQQQRAEDLLEQDRIDQLVQLVGDKATVRQMLVSHLGRSFRQGRHILRVLYYRPLRNLLPGSALRRSETHIARQIFSSLTRINEENGELEADIAHHWQQISPLHWRFFLRPGVHFHHGRELEMDDVIASLKRINTLPLYSHIADIVSPTPWTLDIHLTQPDRWLPLLLGQVPAMILPREWETLSNFASHPIGTGPYAVIRNSTNQLKIQAFDDFFGYRALIDEVNVWVLPEIADEPAGGLMLKGPQGEEKEIESRLEEGCYYLLFDSRTHRGANQQVRDWVSYVLSPTNLVYFAEEQYQQLWFPAYGLLPRWHHARTITSEKPAGLESLTLTFYQDHSEHRVIAGIMQQILASHQVTLEIKEISYDQWHEGEIESDIWLNSANFTLPLDFSLFAHLCEVPLLQHCIPIDWQVDAARWRNGEMNLANWCQQLVASKAMVPLIHHWLIIQGQRSMRGLRMNTLGWFDFKSAWFAPPDPE
>NZ_CP040107.1|WP_001248768.1|4681597_4681729_-|glucose-uptake-inhibitor-SgrT
MRQFYQHYFTATAKLCWLRWLSVPQRLTMLEELMQWEGSHSDY
>NZ_CP040107.1|WP_000888654.1|4693463_4694159_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDRERGVFVIKPSGVDYSIMTADDMVVVSIETGEVVEGAKKPSSDTPTHRLLYQAFPSIGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGTIPCTRKMTDAEINGEYEWETGNVIVETFEKQGIDAAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEVAYMGIFCRQLAPQLPDMQQTLLDKHYLRKHGAKAYYGQ
>NZ_CP040107.1|WP_000035699.1|4694233_4696585_+|DNA-polymerase-II
MAQAGFILTRHWRDTPQGTEVSFWLATDNGPLQVTLAPQESVAFIPADQVPRAQHILRGEQGFRLTPLALKDFHRQPVYGLYCRAHRQLMNYEKRLREGGVTVYEADVRPPERYLMERFITSPVWVEGDMHNGAIVNARLKPHPDYRPPLKWVSIDIETTRHGELYCIGLEGCGQRIVYMLGPENGDASALDFELEYVASRPQLLEKLNAWFANYDPDVIIGWNVVQFDLRMLQKHAERYRIPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKDCELVTQIFHKTEIMPFLLERATVNGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLGEVPPHASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGMAQPDPEHSTEGFLDAWFSREKHCLPEIVTNIWHGRDEAKRQGNKPLSQALKIIMNAFYGVLGTTACRFFDPRLVSSITMRGHQIMRQTKALIEAQGYDVIYGDTDSTFVWLKGAHSEEEATKIGRALVQHVNVWWAETLQKQQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGLIQEGDKQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNEPYQEYFRETIDKLMAGELDARLVYRKRLRRPLSEYQRNVPPHVRAARLADEENQKRGRPLQYQNRGTIKYVWTTNGPEPLDYQRSPLDYEHYLTRQLQPVAEGILPFIEDNFATLMTGQLGLF
>NZ_CP040107.1|WP_001117011.1|4696748_4699655_+|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVAVDARTVTLLFPSTGENRLYARSDSPVTRVMFNPGDTITSHDGWQMQVEEVKEENGLLTYIGTRLDTEESGVALREVFLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKYSSEQFRMPYSGLRGQRTSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVEMLRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYRPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTIYDSVYNDLINYLASPDQTEGFDDLIKNCREQHEALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTNLIAFAMNLFDIIGINQDDRGDNMIVLTPSDHMLVPDFPGLSEDGITITFDREVALAREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLVELIYVVEAQAPKQLQLNRFLPPTPVRMLLDKNGNNLAAQVEFETFNRQLNAVNRHTGSKLVNAVQQDVHAILQLGEAQIEKSARALIDAARNEADEKLSAELSRLEALRAVNPNIRDDELTAIESNRQQVMESLDQAGWRLDALRLIVVTHQ
>NZ_CP040107.1|WP_000525186.1|4699666_4700326_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MGMENYNPPQEPWLVILYQDDHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDYPQAESVHRLDMATSGVIVVALTKAAERELKRQFRERVPKKQYVTRVWGHPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQTEYEVVEYAADNTARVVLKPITGRSHQLRVHMLALGHPILGDRFYASPEARAMAPRLLLHAEMLTITHPAYGNSMTFKAPADF
>NZ_CP040107.1|WP_001304001.1|4700743_4701496_-|pentapeptide-repeat-containing-protein
MKVSVPGMPATLLNMSNNDIYKMVSGDKMDMKMNIFQRLWETLRHLFWSDKQTEAYKLLFNFVNKKAGNINASKYFTGAVNENEKEKFIHSLELFNELKTCAKNPDEMVAKGNMSWVAQTFGDIELSVTFFIENKEICTQTLQLHKGPGNLGVDLREAYLPGVDMRDCYLGLKTMKGHNKVLYLEPGWNANLDGATLDGATLDGATVDGATHLYDEVIIINKITPKKIDTEEVATKQSTAEQITDNAIIE
>NZ_CP040107.1|WP_001200573.1|4701790_4702606_-|co-chaperone-DjlA
MQYWGKIIGVAVALLMGGGFWGVVLGLLIGHMFDKARSRKMAWFANQRERQALFFATTFEVMGHLTKSKGRVTEADIHIASQLMDRMNLHGASRTAAQNAFRVGKSDNYPLREKMRQFRSVCFGRFDLIRMFLEIQIQAAFADGSLHPNERAVLYVIAEELGISRAQFDQFLRMMQGGAQFGGGYQQQSGGGNWQQAQRGPTLEDACNVLGVKPTDDATTIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKQKAQEIQQAYELIKQQKGFK
>NZ_CP040107.1|WP_000746183.1|4702860_4705215_+|LPS-assembly-protein-LptD
MKKRIPTLLATMIATALYSQQGLAADLASQCMLGVPSYDRPLVQGDTNDLPVTINANHAKGDYPDDAVFTGSVDIMQGNSRLQADEVQLHQKEAPGQPEPVRTVDALGNVHYDDNQVILKGPKGWANLNTKDTNVWEGDYQMVGRQGRGKADLMKQRGENRYTILDNGSFTSCLPGSDTWSVVGSEIIHDREEQVAEIWNARFKVGPVSIFYSPYLQLPVGDKRRSGFLIPNAKYTTTNYFEFYLPYYWNIAPNMDATITPHYMHRRGNIMWENEFRYLSQAGAGLMELDYLPSDKVYEDEHPNDDSSRRWLFYWNHSGVMDQVWRFNVDYTKVSDPSYFNDFDNKYGSSTDGYATQKFSVGYAVQNFNATVSTKQFQVFSEQNTSSYSAEPQLDVNYYQNDVGPFDTRIYGQAVHFVNTRDDMPEATRVHLEPTINLPLSNNWGSINTEAKLLATHYQQTNLDWYNSRNTTKLDESVNRVMPQFKVDGKMVFERDMEMLAPGYTQTLEPRAQYLYVPYRDQSDIYNYDSSLLQSDYSGLFRDRTYGGLDRIASANQVTTGVTSRIYDDAAVERFNISVGQIYYFTESRTGDDNITWENDDKTGSLVWAGDTYWRISERWGLRGGIQYDTRLDNVATSNSSIEYRRDEDRLVQLNYRYASPEYIQATLPKYYSTAEQYKNGISQVGAVASWPIADRWSIVGAYYYDTNANKQADSMLGVQYSSCCYAIRVGYERKLNGWDNDKQHAVYDNAIGFNIELRGLSSNYGLGTQEMLRSNILPYQNTL
>NZ_CP040107.1|WP_000800457.1|4705267_4706554_+|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAAQARQQLPDDATLRHQIMERLIMDQIILQMGQKMGVKISDEQLDQAIANIAKQNNMTLDQMRSRLAYDGLNYNTYRNQIRKEMIISEVRNNEVRRRITILPQEVESLAQQVGNQNDASTELNLSHILIPLPENPTSDQVNEAESQARAIVDQARNGADFGKLAIAHSADQQALNGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGESKNISVTEVHARHILLKPSPIMTDEQARVKLEQIAADIKSGKTTFAAAAKEFSQDPGSANQGGDLGWATPDIFDPAFRDALTRLNKGQMSAPVHSSFGWHLIELLDTRNVDKTDAAQKDRAYRMLMNRKFSEEAASWMQEQRASAYVKILSN
>NZ_CP040107.1|WP_000241259.1|4706553_4707543_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MVKTQRVVITPGEPAGIGPDLVVQLAQREWPVELVVCADATLLTDRAAMLGLPLTLRPYSPNSPAQPQTTGTLTLLPVALRESVTAGQLAIENGHYVVETLARACDGCLNGEFAALITGPVHKGVINDAGIPFTGHTEFFEERSQAKKVVMMLATEELRVALATTHLPLRDIADAITPALLHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHMGTEEIDTIIPVLDELRAQGMKLNGPLPADTLFQPKYLDNADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGRGEADVGSFITALNLAIKMIVNTQ
>NZ_CP040107.1|WP_001065380.1|4707539_4708361_+|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCNVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPHPVKDVRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTGMGIDPAMRAENISVAQYCQMANYLAENAPFQES

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Crispr_ID: NZ_CP040107_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP040107_8

4924877-4925026

Orphan

Consensus_repeat	Method
TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP040107_8

>merge|NZ_CP040107|8|4924877-4925026|CRISPRCasFinder
TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAATGCTGTTATTGTCGGATGCGGCATGAACGCCTTATCCGACCTACACAGCACCGAACTCGTAGGCCTGATAAGACGCG

>NZ_CP040107|8|7|4924877-4925026|CRISPRCasFinder
TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	CAAGCGTCGCATCAGGCAATGCTGTTATTGTCGGATGCGGCA
TGAACGCCTTATCCGACCTACACAGCACCGAACTCGTAGGCCTGATAAGACGCG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP040107.1\|WP_000012925.1\|4931062_4932067_+\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|179587
NZ_CP040107.1\|WP_000256678.1\|4934525_4935119_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|366102
NZ_CP040107.1\|WP_000002953.1\|4930484_4930901_-\|ribonuclease-E-inhibitor-RraB	unknown	unknown	gnl\|CDD\|236876
NZ_CP040107.1\|WP_000936844.1\|4915875_4916181_-\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
NZ_CP040107.1\|WP_000397144.1\|4923328_4924840_+\|leucyl-aminopeptidase	unknown	unknown	gnl\|CDD\|234863
NZ_CP040107.1\|WP_000079623.1\|4928546_4929743_-\|DUF898-domain-containing-protein	unknown	unknown	gnl\|CDD\|226719
NZ_CP040107.1\|WP_001453880.1\|4915064_4915799_-\|type-II-restriction-endonuclease	unknown	unknown	unknown
NZ_CP040107.1\|WP_001059397.1\|4929935_4930439_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP040107.1\|WP_000446132.1\|4912884_4913457_+\|Polarity-suppression-protein	unknown	unknown	gnl\|CDD\|311413
NZ_CP040107.1\|WP_000500712.1\|4935189_4935903_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|183714
NZ_CP040107.1\|WP_001295681.1\|4920879_4921962_-\|LPS-export-ABC-transporter-permease-LptG	unknown	unknown	gnl\|CDD\|237900
NZ_CP040107.1\|WP_096942529.1\|4932123_4933806_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP040107.1\|WP_001294533.1\|4919216_4920719_+\|DUF853-domain-containing-protein	unknown	unknown	gnl\|CDD\|283518
NZ_CP040107.1\|WP_000416407.1\|4925636_4928492_+\|valine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235582
NZ_CP040107.1\|WP_000584114.1\|4921961_4923062_-\|LPS-export-ABC-transporter-permease-LptF	unknown	unknown	gnl\|CDD\|185075
NZ_CP040107.1\|WP_000583470.1\|4933928_4934381_-\|toxin-antitoxin-biofilm-protein-TabA	unknown	unknown	gnl\|CDD\|225345
NZ_CP040107.1\|WP_001301967.1\|4918067_4919087_+\|NADPH-dependent-aldehyde-reductase-Ahr	unknown	unknown	gnl\|CDD\|176186
NZ_CP040107.1\|WP_000772662.1\|4916348_4917623_-\|integrase-arm-type-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|170049
NZ_CP040107.1\|WP_000786399.1\|4925193_4925637_+\|DNA-polymerase-III-subunit-chi	unknown	unknown	gnl\|CDD\|235581
NZ_CP040107.1\|WP_000095622.1\|4913782_4915027_+\|DNA-cytosine-methyltransferase	unknown	unknown	gnl\|CDD\|223348

Protein	Function_ID	Function_description	E-value
NZ_CP040107.1\|WP_000012925.1\|4931062_4932067_+\|ornithine-carbamoyltransferase	gnl\|CDD\|179587	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional.	0
NZ_CP040107.1\|WP_000256678.1\|4934525_4935119_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|366102	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.	9.63528e-10
NZ_CP040107.1\|WP_000002953.1\|4930484_4930901_-\|ribonuclease-E-inhibitor-RraB	gnl\|CDD\|236876	PRK11191, PRK11191, ribonuclease E inhibitor RraB.	4.50628e-69
NZ_CP040107.1\|WP_000936844.1\|4915875_4916181_-\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.8494e-12
NZ_CP040107.1\|WP_000079623.1\|4928546_4929743_-\|DUF898-domain-containing-protein	gnl\|CDD\|226719	COG4269, COG4269, Predicted membrane protein [Function unknown].	5.35185e-152
NZ_CP040107.1\|WP_000397144.1\|4923328_4924840_+\|leucyl-aminopeptidase	gnl\|CDD\|234863	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional.	0
NZ_CP040107.1\|WP_001059397.1\|4929935_4930439_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	3.52162e-19
NZ_CP040107.1\|WP_000446132.1\|4912884_4913457_+\|Polarity-suppression-protein	gnl\|CDD\|311413	pfam07455, Psu, Phage polarity suppression protein (Psu). This family contains a number of phage polarity suppression proteins (Psu) (approximately 190 residues long). The Psu protein of bacteriophage P4 causes suppression of transcriptional polarity in Escherichia coli by overcoming Rho termination factor activity.	5.7343e-53
NZ_CP040107.1\|WP_000500712.1\|4935189_4935903_+\|SDR-family-oxidoreductase	gnl\|CDD\|183714	PRK12742, PRK12742, SDR family oxidoreductase.	2.19644e-150
NZ_CP040107.1\|WP_001295681.1\|4920879_4921962_-\|LPS-export-ABC-transporter-permease-LptG	gnl\|CDD\|237900	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional.	0
NZ_CP040107.1\|WP_001294533.1\|4919216_4920719_+\|DUF853-domain-containing-protein	gnl\|CDD\|283518	pfam05872, DUF853, Bacterial protein of unknown function (DUF853). This family consists of several bacterial proteins of unknown function. BMEI1370 is thought to be an ATPase.	0
NZ_CP040107.1\|WP_000416407.1\|4925636_4928492_+\|valine--tRNA-ligase	gnl\|CDD\|235582	PRK05729, valS, valyl-tRNA synthetase; Reviewed.	0
NZ_CP040107.1\|WP_000583470.1\|4933928_4934381_-\|toxin-antitoxin-biofilm-protein-TabA	gnl\|CDD\|225345	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism].	3.50239e-70
NZ_CP040107.1\|WP_001301967.1\|4918067_4919087_+\|NADPH-dependent-aldehyde-reductase-Ahr	gnl\|CDD\|176186	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines.	5.44918e-169
NZ_CP040107.1\|WP_000095622.1\|4913782_4915027_+\|DNA-cytosine-methyltransferase	gnl\|CDD\|223348	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair].	4.0359e-78
NZ_CP040107.1\|WP_000772662.1\|4916348_4917623_-\|integrase-arm-type-DNA-binding-domain-containing-protein	gnl\|CDD\|170049	PRK09692, PRK09692, integrase; Provisional.	8.97279e-83
NZ_CP040107.1\|WP_000786399.1\|4925193_4925637_+\|DNA-polymerase-III-subunit-chi	gnl\|CDD\|235581	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated.	5.53743e-66
NZ_CP040107.1\|WP_000584114.1\|4921961_4923062_-\|LPS-export-ABC-transporter-permease-LptF	gnl\|CDD\|185075	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional.	0

>NZ_CP040107.1|WP_000397144.1|4923328_4924840_+|leucyl-aminopeptidase
MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFNVPTRRELTSGERAIQHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNVITRVIGEQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFEPEAVIDVATLTGACVIALGHHITGLMANHNPLAHELIAASEQSGDRAWRLPLGDEYQEQLESNFADMANIGGRPGGAITAGCFLSRFTRKYNWAHLDIAGTAWRSGKAKGATGRPVALLAQFLLNRAGFNGEE
>NZ_CP040107.1|WP_000584114.1|4921961_4923062_-|LPS-export-ABC-transporter-permease-LptF
MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIPANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAAMILAVFTAIVAAVNVMWAGPWSSRHQDEVLAEAKANPGMAALAQGQFQQATNGSSVLFIESVDGSDFKDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNQGTRFEGTALLRDFRITDFQDYQAIIGHQAVALDPNDTDQMDMRTLWNTDTDRARAELNWRITLVFTVFMMALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSLKSNGGKGKLDPTLWMWTVNLIYLALAIVLNLWDTVPVRRLRASFSRKGAV
>NZ_CP040107.1|WP_001295681.1|4920879_4921962_-|LPS-export-ABC-transporter-permease-LptG
MQPFGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQGSYDALGAGMYTLLSVPKDVQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQVALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNFVYIERVKGDEELGGISIYAFNENRRLQSVRYAATAKFDPEHKVWRLSQVDESDLTNPKQITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLHNYVKYLKSSGQDAGRYQLNMWSKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYGIPPIIGALLPSASFFLISLWLLMRKS
>NZ_CP040107.1|WP_001294533.1|4919216_4920719_+|DUF853-domain-containing-protein
MSEPLLIARTPDTELFLLPGMANRHGLITGATGTGKTVTLQKLAESLSEIGVPVFMADVKGDLTGIAQAGTASEKLLARLKNIDVNDWQPHANPVVVWDIFGEKGHSVRATVSDLGPLLLARLLNLNDVQSGVLNIIFRIADDQGLLLLDFKDLRAITQYIGDNAKSFQNQYGNISSASVGAIQRGLLSLEQQGAAHFFGEPMLDIKDWMRTDANGKGVINILSAEKLYQMPKLYAASLLWMLSELYEQLPEAGDLEKPKLVFFFDEAHLLFNDAPQVLLDKIEQVIRLIRSKGVGVWFVSQNPSDIPDNVLGQLGNRVQHALRAFTPKDQKAVKAAAQTMRANPAFDTEKAIQELGTGEALISFLDAKGSPSVVERAMVIAPCSRMGPVTEDERNGLINHSPVYGKYEDEVDRESAYEMLQKGFQASTEQQNNPPAKGKEVAVDDGILGGLKDILFGTTGPRGGKKDGVVQTMAKSAARQVTNQIVRGMLGSLLGGRRR
>NZ_CP040107.1|WP_001301967.1|4918067_4919087_+|NADPH-dependent-aldehyde-reductase-Ahr
MSMIKSYAAKEAGGELEVYEYDPGELRPQDVEVQVDYCGICHSDLSMIDNEWGFSQYPLVAGHEVIGRVVALGSAAQDKGLQVGQRVGIGWTARSCGHCDACISGNQINCEQGAVPTIMNRGGFAEKLRADWQWVIPLPENIDIESAGPLLCGGITVFKPLLMHHITATSRVGVIGIGGLGHIAIKLLHAMGCEVTAFSSNPAKEQEVLAMGADKVVNSRDPQALKALSGQFDLIINTVNVSLDWQPYFEALTYGGNFHTVGAVLTPLPVPAFTLIAGDRSVSGSATGTPYELRKLMRFAARSKVAPTTELFPMSKINDAIKHVRDGKARYRVVLKADF
>NZ_CP040107.1|WP_000772662.1|4916348_4917623_-|integrase-arm-type-DNA-binding-domain-containing-protein
MKLNARQVETAKPKDKSYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPTVTLAEARTRRDEAKKLLAQGIDPKAVQKEAQAENAGAYNFETIAREWHASNKRWSEDHRARVLRYLELYIFPYIGLSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQNDYIDSNPASDMAGALSTAKTRHYPALPSHRFPEFLARLAAYRGRMMTKIAVELSLLTFVRSSELRFARWDEFDFDKSLWRIPAKREEIKGVRYSYRGMKMKEEHLVPLSRQAIGLLEQLKQISGDKTLLFPGDHDATKVMSENTVNNALRAMGYDTKTEVCGHGFRTMARGALGESGLWSDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLYSNREKHISAFEFANKLNKNSLD
>NZ_CP040107.1|WP_000936844.1|4915875_4916181_-|helix-turn-helix-transcriptional-regulator
MLPIRLKKARLNAGLTQEQLGILVGIDECSASARMNQYEKGKHMPDFSLTKKIADLLNVPVSYFYTPEDDLAEIILLINKLDKKQRLILLKNLSDGFISHE
>NZ_CP040107.1|WP_001453880.1|4915064_4915799_-|type-II-restriction-endonuclease
MSETMSINPFMTPFIFDYHSLNDFDELVEAIIAKHLMTGHDTGFGKLIDEKILPRVFGAYKLDKSYRAANEPFIHPCFDEIDHVIQRDDGRIELLSLKAGKWTIQLTMAVQLNKAFHEIINNYPGVADNIVVGVFYGNSHGLTDKYRILRGINTGANHNVIDIRDKVHVYAGKEFWSWLNNGEAETQHWVLEGIERAVKEADIKEKNKDLIEKFKEHVAKKYNEQVLNADGTAQWHKLLEMINE
>NZ_CP040107.1|WP_000095622.1|4913782_4915027_+|DNA-cytosine-methyltransferase
MSSKKFISLFSGAMGLDLGLEEAGFELVACVEQDKAALKTIKTNKPNLAVFEGSIVDCTGSELLALAGVNDKEEIDLVAGGPPCQAFSVFGNRLGLEDARGQLIFEYVRMIKELNPKVFVMENVRGLLSMSIVPASKKKELSGTIAASAFEKGSLIKRVANEFNKLGYHVDCFVVNAANYGAPQIRERVILIGNRFGMIANFASPLFSNRVEDNLPPFKTLGDVIGPESGFVDKYPEVMNFSPRKLKYLSMVPPGGNWRSMPEEMQKESMGKSWYLKGGRSAYWRKLSFQFPSPTVVTMPNHAGTSMCHPTELRAISVGEAAAIQEFPDYWKFEGTTTEKFRQIGNAVPVRLGKVAGEAAMELLHRIQENKVADLVTPDYIETHIRPHIRTRSFFKNGQAYSGDVSYYDLEEEV
>NZ_CP040107.1|WP_000446132.1|4912884_4913457_+|Polarity-suppression-protein
MESTALQQAFDTCQNNKAAWLQRKNELAAAEQEYLRLLSGEGRNVSRLDELRNIIEVRKWQVNQAAGRYIRSHEAVQHISIRDRLNDFMQQHGTALAAALAPELMGYSELTAIARNCAIQRATDALREALLSWLAKGEKINYSAQDSDILTTIGFRPDAASVDDSREKFTPAQNMIFSRKSAQLASRQSV
>NZ_CP040107.1|WP_000786399.1|4925193_4925637_+|DNA-polymerase-III-subunit-chi
MKNATFYLLDNDTTVDGLSAVEQLVCEIAAERWRSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGPRGGAPVEIAWPQKRSSSPRDILISLRTSFADFATAFTEVVDFVPYEDSLKQLARERYKAYRVAGFNLNTATWK
>NZ_CP040107.1|WP_000416407.1|4925636_4928492_+|valine--tRNA-ligase
MEKTYNPQDIEQPLYEHWEKQGYFKPNGDESQESFCIMIPPPNVTGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKIAAEEGKTRHDYGREAFIDKIWEWKAESGGTITRQMRRLGNSVDWERERFTMDEGLSNAVKEVFVRLYKEDLIYRGKRLVNWDPKLRTAISDLEVENRESKGSMWHIRYPLADGAKTADGKDYLVVATTRPETLLGDTGVAVNPEDPRYKDLIGKYVILPLVNRRIPIVGDEHADMEKGTGCVKITPAHDFNDYEVGKRHALPMINILTFDGDIRESAQVFDTKGNESDVYSSEIPAEFQKLERFAARKAVVAAVDALGLLEEIKPHDLTVPYGDRGGVVIEPMLTDQWYVRADVLAKPAVEAVENGDIQFVPKQYENMYFSWMRDIQDWCISRQLWWGHRIPAWYDEAGNVYVGRNEEEVRKENNLGADVALRQDEDVLDTWFSSALWTFSTLGWPENTDALRQFHPTSVMVSGFDIIFFWIARMIMMTMHFIKDENGKPQVPFHTVYMTGLIRDDEGQKMSKSKGNVIDPLDMVDGISLPELLEKRTGNMMQPQLADKIRKRTEKQFPNGIEPHGTDALRFTLAALASTGRDINWDMKRLEGYRNFCNKLWNASRFVLMNTEGQDCGFNGGEMTLSLADRWILAEFNQTIKAYREALDSFRFDIAAGILYEFTWNQFCDWYLELTKPVMNGGTEAELRGTRHTLVTVLEGLLRLAHPIIPFITETIWQRVKVLCGITADTIMLQPFPQYDASQVDEAALADTEWLKQAIVAVRNIRAEMNIAPGKPLELLLRGCSADAERRVNENRGFLQTLARLESITVLPADDKGPVSVTKIIDGAELLIPMAGLINKEDELARLAKEVAKIEGEISRIENKLANEGFVARAPEAVIAKEREKLEGYAEAKAKLIEQQAVIAAL
>NZ_CP040107.1|WP_000079623.1|4928546_4929743_-|DUF898-domain-containing-protein
MAQVINEMDVPSHSFVFHGTGERYFLICVVNVLLTIITLGIYLPWALMKCKRYLYANMEVNGQRFSYGITGGNVFFSCLVFVFFYFAILMTVSADMPLIGCVLTLSLLVLLIFMAAKGLRYQALMTSLNGVRFSFNCSMKGVWWVTFFLPILMAIGMGTVFFISTKMLHANSSSSVIVSVVLMAIVGIVSIGIFNGTLYSLVMSFLWSNTSFGIHRFKVKLDTAYCIKYAILAFLALLPFLAVAGYIIFDQILNAYDSSVYANDDIENLQQFMEMQRKMIIAQLIYYFGIAVSTSYLTVSLRNHFMSNLSLNDGRIRFRSTLTYHGMLYRMCALVVISGITGGLAYPLLKIWMIDWQAKNTYLLGDLDDLPLINKEEQPDKGFLASISRGIMPSLPFL
>NZ_CP040107.1|WP_001059397.1|4929935_4930439_+|GNAT-family-N-acetyltransferase
MNNIAPQSPVMRRLTLQDNPAIARVIRQVSAEYGLTADKGYTVADPNLDELYQVYSQPGHAYWVVEYEGEVVGGGGIAPLAGSESDICELQKMYFLPAIRGKGLAKKLALKAMEEAREMGFKRCYLETTAFLKEAIGLYEHLGFQHIDYALGCTGHVDCEVRMLREL
>NZ_CP040107.1|WP_000002953.1|4930484_4930901_-|ribonuclease-E-inhibitor-RraB
MANPEQLEEQREETRLIIEELLEDGSDPDALYTIEHHLSADDLETLEKAAVEAFKLGYEVTDPEELEVEDGDIVICCDILSECALNADLIDAQVEQLMTLAEKFDVEYDGWGTYFEDPNGEDGDDEDFVDEDDDGVRH
>NZ_CP040107.1|WP_000012925.1|4931062_4932067_+|ornithine-carbamoyltransferase
MSGFYHKHFLKLLDFTPAELNSLLQLAAKLKADKKSGKEEAKLTGKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGYGQEIVETLAEYAGVPVWNGLTNEFHPTQLLADLLTMQEHLPGKPFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDVWVSMGEAKEKWAERIALLRDYQVNSKMMQLTGNPEVKFLHCLPAFHDDQTTLGKKMAEEFGLHGGMEVTDEVFESAASIVFDQAENRMHTIKAVMVATLSK
>NZ_CP040107.1|WP_096942529.1|4932123_4933806_-|hypothetical-protein
MSKISDLNYSQHITLADNFKQKSEVLNTWRVGMNNFARNAGGQDNTRNILNPKTFLEFLVKIFTLGYVDFSKRSNEAGRNMMAHIESSSYIKNNDGSEIMKFVMNNPEGERADSPKVIIEISLSTITTMGTRQGHTAIIFPQPDGSTNRYERKSFERKDESSLHLITNKVLACYQREANKEIARLLNNHQKLNNLQKLNNSQELNNSQELNNSQDLKNSQVSCKGSVDFTITDLLEKSLNNALLAIRNEHLLLMPHVCSESISYLLGENGILEEIDKLYELNDHGIDNDKEGNNEINDIMINLSHILIESLDDAKVNLTPVIHSMLMTFLELPYNNDVKILEWCFNKSMQYFDDSAKIEHACSVINHINFRRDQSKVAETLFFNLDKEPYKNSPELQELIWKKLVVYVNDFNLSNREKTYLIQRIFNNVESLFNKVPVSILVNDIFMNDFFMKNTEMINWYFPRLLKSYEDEKIYFDKLGYNFNNKESNEEIMKNQPKDVIEEKLNNELKLRFRMMQTILKSEVNVSPFIDQQRLNTLNPPENLRIAIEKFGWKKKTITA
>NZ_CP040107.1|WP_000583470.1|4933928_4934381_-|toxin-antitoxin-biofilm-protein-TabA
MIIGNIHNLQPWLPQELRQAIEHIKAHVTAETPKGKHDIEGNRLFYLISEDMTEPYEARRAEYHARYLDIQIVLKGQEGMTFSTQPAGTPDTDWLADKDIAFLPEGVDEKTVILNEGDFVVFYPGEVHKPLCAVGAPAQVRKAVVKMLMA
>NZ_CP040107.1|WP_000256678.1|4934525_4935119_-|TetR/AcrR-family-transcriptional-regulator
MVTKKQSRVPGRPRRFAPEQAVSAAKVLFHQKGFDAVSVAEVTDYLGINPPSLYAAFGSKAGLFSRVLNEYVGTEAIPLVDILRDDRPVGECLAEVLKEAARRYSQNGGCAGCMVLEGIHSHDPQARDIAVQYYHAAETAIYDYIARLHPQSAQCVTDFMSTVMSGLSAKAREGHSLEQLCATAALAGEAIKTILKE
>NZ_CP040107.1|WP_000500712.1|4935189_4935903_+|SDR-family-oxidoreductase
MGAFTGKTVLILGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQETGATAVFTDSADRDAVIDVVRKSGALDILVVNAGIGVFGDALELNADDIDRLFKINIHAPYHASVEAARQMPEGGRILIIGSVNGDRMPVAGMAAYAASKSALQGMARGLARDFGPRGITINVVQPGPIDTDANPANGPMRDMLHSFMAIKRHGQPEEVAGMVAWLAGPEASFVTGAMHTIDGAFGA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP040107_6	6.2\|3195560\|25\|NZ_CP040107\|PILER-CR	3195560-3195584	25	NZ_CP040107.1	1785172-1785196	0	1.0

1. spacer 6.2|3195560|25|NZ_CP040107|PILER-CR matches to position: 1785172-1785196, mismatch: 0, identity: 1.0

tttacctctttcaggtaaactttat	CRISPR spacer
tttacctctttcaggtaaactttat	Protospacer
*************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP040107_6	6.1\|3195513\|24\|NZ_CP040107\|PILER-CR	3195513-3195536	24	NC_049946	Escherichia virus Lambda_4A7 genome assembly, chromosome: 1	37652-37675	0	1.0
NZ_CP040107_6	6.1\|3195513\|24\|NZ_CP040107\|PILER-CR	3195513-3195536	24	LR595861	Escherichia virus Lambda_4C10 genome assembly, chromosome: 1	37935-37958	0	1.0
NZ_CP040107_6	6.2\|3195560\|25\|NZ_CP040107\|PILER-CR	3195560-3195584	25	NC_049946	Escherichia virus Lambda_4A7 genome assembly, chromosome: 1	37604-37628	0	1.0
NZ_CP040107_6	6.2\|3195560\|25\|NZ_CP040107\|PILER-CR	3195560-3195584	25	LR595861	Escherichia virus Lambda_4C10 genome assembly, chromosome: 1	37887-37911	0	1.0
NZ_CP040107_2	2.1\|1120031\|31\|NZ_CP040107\|PILER-CR,CRT	1120031-1120061	31	MK047640	Phage NV18, complete genome	15646-15676	1	0.968
NZ_CP040107_2	2.4\|1120031\|32\|NZ_CP040107\|CRISPRCasFinder	1120031-1120062	32	MK047640	Phage NV18, complete genome	15645-15676	1	0.969
NZ_CP040107_6	6.1\|3195513\|24\|NZ_CP040107\|PILER-CR	3195513-3195536	24	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	44572-44595	1	0.958
NZ_CP040107_6	6.2\|3195560\|25\|NZ_CP040107\|PILER-CR	3195560-3195584	25	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	44524-44548	1	0.96
NZ_CP040107_2	2.1\|1120031\|31\|NZ_CP040107\|PILER-CR,CRT	1120031-1120061	31	MF417881	Uncultured Caudovirales phage clone 7AX_3, partial genome	2718-2748	2	0.935
NZ_CP040107_2	2.4\|1120031\|32\|NZ_CP040107\|CRISPRCasFinder	1120031-1120062	32	MF417881	Uncultured Caudovirales phage clone 7AX_3, partial genome	2718-2749	2	0.938
NZ_CP040107_5	5.1\|2481480\|38\|NZ_CP040107\|CRISPRCasFinder	2481480-2481517	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	101196-101230	2	0.943
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	165464-165498	3	0.914
NZ_CP040107_6	6.2\|3195560\|25\|NZ_CP040107\|PILER-CR	3195560-3195584	25	NZ_CP015341	Lactobacillus brevis strain 100D8 plasmid unnamed3, complete sequence	35661-35685	4	0.84
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	14239-14273	5	0.857
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP044308	Escherichia coli strain C27A plasmid pC27A-3, complete sequence	56080-56114	5	0.857
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	6804-6838	6	0.829
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	208981-209015	6	0.829
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	219475-219509	6	0.829
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	210309-210343	6	0.829
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	191264-191298	6	0.829
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	30177-30211	6	0.829
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	MT230312	Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence	170-204	6	0.829
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_AP023209	Escherichia coli strain TUM18781 plasmid pMTY18781-4, complete sequence	88-122	6	0.829
NZ_CP040107_2	2.3\|1120153\|31\|NZ_CP040107\|CRT	1120153-1120183	31	NC_015512	Haliscomenobacter hydrossis DSM 1100 plasmid pHALHY02, complete sequence	90200-90230	7	0.774
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	87137-87171	7	0.8
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	138033-138067	7	0.8
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	43-77	7	0.8
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	3372-3406	7	0.8
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	208887-208921	7	0.8
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	42-76	7	0.8
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	3371-3405	7	0.8
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	219381-219415	7	0.8
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	42-76	7	0.8
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	3371-3405	7	0.8
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	210215-210249	7	0.8
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	42-76	7	0.8
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	3371-3405	7	0.8
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	191170-191204	7	0.8
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	27246-27280	7	0.8
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP044307	Escherichia coli strain C27A plasmid pC27A-2, complete sequence	18350-18384	7	0.8
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP044307	Escherichia coli strain C27A plasmid pC27A-2, complete sequence	15018-15052	7	0.8
NZ_CP040107_2	2.1\|1120031\|31\|NZ_CP040107\|PILER-CR,CRT	1120031-1120061	31	NC_011370	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG203, complete sequence	102901-102931	8	0.742
NZ_CP040107_2	2.1\|1120031\|31\|NZ_CP040107\|PILER-CR,CRT	1120031-1120061	31	NZ_CP032697	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525a, complete sequence	313484-313514	8	0.742
NZ_CP040107_2	2.1\|1120031\|31\|NZ_CP040107\|PILER-CR,CRT	1120031-1120061	31	NZ_CP049249	Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed3, complete sequence	984473-984503	8	0.742
NZ_CP040107_2	2.6\|1120153\|32\|NZ_CP040107\|CRISPRCasFinder	1120153-1120184	32	NC_015512	Haliscomenobacter hydrossis DSM 1100 plasmid pHALHY02, complete sequence	90200-90231	8	0.75
NZ_CP040107_3	3.1\|1644408\|54\|NZ_CP040107\|CRISPRCasFinder	1644408-1644461	54	MT230402	Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence	262-315	8	0.852
NZ_CP040107_3	3.1\|1644408\|54\|NZ_CP040107\|CRISPRCasFinder	1644408-1644461	54	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	12103-12156	8	0.852
NZ_CP040107_3	3.1\|1644408\|54\|NZ_CP040107\|CRISPRCasFinder	1644408-1644461	54	NZ_CP019246	Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence	41406-41459	8	0.852
NZ_CP040107_4	4.1\|2281567\|44\|NZ_CP040107\|CRISPRCasFinder	2281567-2281610	44	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	210148-210191	8	0.818
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	61916-61950	8	0.771
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4114-4148	8	0.771
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229148-229182	8	0.771
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229249-229283	8	0.771
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229350-229384	8	0.771
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229451-229485	8	0.771
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	203852-203886	8	0.771
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	204038-204072	8	0.771
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	204131-204165	8	0.771
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4113-4147	8	0.771
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239642-239676	8	0.771
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239743-239777	8	0.771
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239844-239878	8	0.771
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239945-239979	8	0.771
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	214346-214380	8	0.771
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	214532-214566	8	0.771
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	214625-214659	8	0.771
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4113-4147	8	0.771
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230554-230588	8	0.771
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230655-230689	8	0.771
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230756-230790	8	0.771
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230857-230891	8	0.771
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	205180-205214	8	0.771
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	205366-205400	8	0.771
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	205459-205493	8	0.771
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4113-4147	8	0.771
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211524-211558	8	0.771
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211625-211659	8	0.771
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211726-211760	8	0.771
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211827-211861	8	0.771
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	186135-186169	8	0.771
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	186321-186355	8	0.771
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	186414-186448	8	0.771
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP044307	Escherichia coli strain C27A plasmid pC27A-2, complete sequence	14272-14306	8	0.771
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP044147	Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2	6744-6778	8	0.771
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP044147	Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2	7392-7426	8	0.771
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	CP044351	Escherichia coli strain 194195 plasmid p194195_1, complete sequence	83590-83624	8	0.771
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	CP044351	Escherichia coli strain 194195 plasmid p194195_1, complete sequence	84216-84250	8	0.771
NZ_CP040107_2	2.4\|1120031\|32\|NZ_CP040107\|CRISPRCasFinder	1120031-1120062	32	NC_011370	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG203, complete sequence	102900-102931	9	0.719
NZ_CP040107_2	2.4\|1120031\|32\|NZ_CP040107\|CRISPRCasFinder	1120031-1120062	32	NZ_CP032697	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525a, complete sequence	313483-313514	9	0.719
NZ_CP040107_2	2.4\|1120031\|32\|NZ_CP040107\|CRISPRCasFinder	1120031-1120062	32	NZ_CP049249	Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed3, complete sequence	984472-984503	9	0.719
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	386558-386592	9	0.743
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4013-4047	9	0.743
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4012-4046	9	0.743
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4012-4046	9	0.743
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4012-4046	9	0.743
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP044308	Escherichia coli strain C27A plasmid pC27A-3, complete sequence	13988-14022	9	0.743
NZ_CP040107_7	7.1\|4693366\|35\|NZ_CP040107\|CRISPRCasFinder	4693366-4693400	35	NZ_CP019246	Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence	41415-41449	9	0.743
NZ_CP040107_3	3.1\|1644408\|54\|NZ_CP040107\|CRISPRCasFinder	1644408-1644461	54	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229441-229494	10	0.815
NZ_CP040107_3	3.1\|1644408\|54\|NZ_CP040107\|CRISPRCasFinder	1644408-1644461	54	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239935-239988	10	0.815
NZ_CP040107_3	3.1\|1644408\|54\|NZ_CP040107\|CRISPRCasFinder	1644408-1644461	54	NZ_CP044147	Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2	7383-7436	10	0.815
NZ_CP040107_3	3.1\|1644408\|54\|NZ_CP040107\|CRISPRCasFinder	1644408-1644461	54	CP044351	Escherichia coli strain 194195 plasmid p194195_1, complete sequence	84207-84260	10	0.815
NZ_CP040107_3	3.1\|1644408\|54\|NZ_CP040107\|CRISPRCasFinder	1644408-1644461	54	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	87127-87180	10	0.815
NZ_CP040107_3	3.1\|1644408\|54\|NZ_CP040107\|CRISPRCasFinder	1644408-1644461	54	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230847-230900	10	0.815
NZ_CP040107_3	3.1\|1644408\|54\|NZ_CP040107\|CRISPRCasFinder	1644408-1644461	54	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211817-211870	10	0.815
NZ_CP040107_3	3.1\|1644408\|54\|NZ_CP040107\|CRISPRCasFinder	1644408-1644461	54	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4105-4158	11	0.796
NZ_CP040107_3	3.1\|1644408\|54\|NZ_CP040107\|CRISPRCasFinder	1644408-1644461	54	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	3363-3416	11	0.796
NZ_CP040107_3	3.1\|1644408\|54\|NZ_CP040107\|CRISPRCasFinder	1644408-1644461	54	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4104-4157	11	0.796
NZ_CP040107_3	3.1\|1644408\|54\|NZ_CP040107\|CRISPRCasFinder	1644408-1644461	54	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	3362-3415	11	0.796
NZ_CP040107_3	3.1\|1644408\|54\|NZ_CP040107\|CRISPRCasFinder	1644408-1644461	54	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4104-4157	11	0.796
NZ_CP040107_3	3.1\|1644408\|54\|NZ_CP040107\|CRISPRCasFinder	1644408-1644461	54	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	3362-3415	11	0.796
NZ_CP040107_3	3.1\|1644408\|54\|NZ_CP040107\|CRISPRCasFinder	1644408-1644461	54	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4104-4157	11	0.796
NZ_CP040107_3	3.1\|1644408\|54\|NZ_CP040107\|CRISPRCasFinder	1644408-1644461	54	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	3362-3415	11	0.796
NZ_CP040107_3	3.1\|1644408\|54\|NZ_CP040107\|CRISPRCasFinder	1644408-1644461	54	NZ_AP023207	Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence	31242-31295	11	0.796
NZ_CP040107_3	3.1\|1644408\|54\|NZ_CP040107\|CRISPRCasFinder	1644408-1644461	54	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	34-87	12	0.778
NZ_CP040107_3	3.1\|1644408\|54\|NZ_CP040107\|CRISPRCasFinder	1644408-1644461	54	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4004-4057	12	0.778
NZ_CP040107_3	3.1\|1644408\|54\|NZ_CP040107\|CRISPRCasFinder	1644408-1644461	54	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229239-229292	12	0.778
NZ_CP040107_3	3.1\|1644408\|54\|NZ_CP040107\|CRISPRCasFinder	1644408-1644461	54	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229340-229393	12	0.778
NZ_CP040107_3	3.1\|1644408\|54\|NZ_CP040107\|CRISPRCasFinder	1644408-1644461	54	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	33-86	12	0.778
NZ_CP040107_3	3.1\|1644408\|54\|NZ_CP040107\|CRISPRCasFinder	1644408-1644461	54	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4003-4056	12	0.778
NZ_CP040107_3	3.1\|1644408\|54\|NZ_CP040107\|CRISPRCasFinder	1644408-1644461	54	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239733-239786	12	0.778
NZ_CP040107_3	3.1\|1644408\|54\|NZ_CP040107\|CRISPRCasFinder	1644408-1644461	54	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239834-239887	12	0.778
NZ_CP040107_3	3.1\|1644408\|54\|NZ_CP040107\|CRISPRCasFinder	1644408-1644461	54	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	33-86	12	0.778
NZ_CP040107_3	3.1\|1644408\|54\|NZ_CP040107\|CRISPRCasFinder	1644408-1644461	54	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4003-4056	12	0.778
NZ_CP040107_3	3.1\|1644408\|54\|NZ_CP040107\|CRISPRCasFinder	1644408-1644461	54	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230645-230698	12	0.778
NZ_CP040107_3	3.1\|1644408\|54\|NZ_CP040107\|CRISPRCasFinder	1644408-1644461	54	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230746-230799	12	0.778
NZ_CP040107_3	3.1\|1644408\|54\|NZ_CP040107\|CRISPRCasFinder	1644408-1644461	54	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	33-86	12	0.778
NZ_CP040107_3	3.1\|1644408\|54\|NZ_CP040107\|CRISPRCasFinder	1644408-1644461	54	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4003-4056	12	0.778
NZ_CP040107_3	3.1\|1644408\|54\|NZ_CP040107\|CRISPRCasFinder	1644408-1644461	54	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211615-211668	12	0.778
NZ_CP040107_3	3.1\|1644408\|54\|NZ_CP040107\|CRISPRCasFinder	1644408-1644461	54	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211716-211769	12	0.778
NZ_CP040107_3	3.1\|1644408\|54\|NZ_CP040107\|CRISPRCasFinder	1644408-1644461	54	NZ_CP044307	Escherichia coli strain C27A plasmid pC27A-2, complete sequence	15008-15061	12	0.778
NZ_CP040107_3	3.1\|1644408\|54\|NZ_CP040107\|CRISPRCasFinder	1644408-1644461	54	NZ_CP044307	Escherichia coli strain C27A plasmid pC27A-2, complete sequence	18340-18393	12	0.778
NZ_CP040107_3	3.1\|1644408\|54\|NZ_CP040107\|CRISPRCasFinder	1644408-1644461	54	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	30167-30220	13	0.759
NZ_CP040107_3	3.1\|1644408\|54\|NZ_CP040107\|CRISPRCasFinder	1644408-1644461	54	MT230312	Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence	160-213	14	0.741

1. spacer 6.1|3195513|24|NZ_CP040107|PILER-CR matches to NC_049946 (Escherichia virus Lambda_4A7 genome assembly, chromosome: 1) position: , mismatch: 0, identity: 1.0

cgcctttacctgatttgggtaaac	CRISPR spacer
cgcctttacctgatttgggtaaac	Protospacer
************************

2. spacer 6.1|3195513|24|NZ_CP040107|PILER-CR matches to LR595861 (Escherichia virus Lambda_4C10 genome assembly, chromosome: 1) position: , mismatch: 0, identity: 1.0

cgcctttacctgatttgggtaaac	CRISPR spacer
cgcctttacctgatttgggtaaac	Protospacer
************************

3. spacer 6.2|3195560|25|NZ_CP040107|PILER-CR matches to NC_049946 (Escherichia virus Lambda_4A7 genome assembly, chromosome: 1) position: , mismatch: 0, identity: 1.0

tttacctctttcaggtaaactttat	CRISPR spacer
tttacctctttcaggtaaactttat	Protospacer
*************************

4. spacer 6.2|3195560|25|NZ_CP040107|PILER-CR matches to LR595861 (Escherichia virus Lambda_4C10 genome assembly, chromosome: 1) position: , mismatch: 0, identity: 1.0

tttacctctttcaggtaaactttat	CRISPR spacer
tttacctctttcaggtaaactttat	Protospacer
*************************

5. spacer 2.1|1120031|31|NZ_CP040107|PILER-CR,CRT matches to MK047640 (Phage NV18, complete genome) position: , mismatch: 1, identity: 0.968

tcaccaaaacagtgacaaaaactgtcaccaa	CRISPR spacer
tcaccaaaacagtgacaaaaagtgtcaccaa	Protospacer
********************* *********

6. spacer 2.4|1120031|32|NZ_CP040107|CRISPRCasFinder matches to MK047640 (Phage NV18, complete genome) position: , mismatch: 1, identity: 0.969

tcaccaaaacagtgacaaaaactgtcaccaaa	CRISPR spacer
tcaccaaaacagtgacaaaaagtgtcaccaaa	Protospacer
********************* **********

7. spacer 6.1|3195513|24|NZ_CP040107|PILER-CR matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 1, identity: 0.958

cgcctttacctgatttgggtaaac	CRISPR spacer
tgcctttacctgatttgggtaaac	Protospacer
.***********************

8. spacer 6.2|3195560|25|NZ_CP040107|PILER-CR matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 1, identity: 0.96

tttacctctttcaggtaaactttat	CRISPR spacer
tttacctctttaaggtaaactttat	Protospacer
*********** *************

9. spacer 2.1|1120031|31|NZ_CP040107|PILER-CR,CRT matches to MF417881 (Uncultured Caudovirales phage clone 7AX_3, partial genome) position: , mismatch: 2, identity: 0.935

tcaccaaaacagtgacaaaaactgtcaccaa	CRISPR spacer
tcaccaaatcagtgacaaaaagtgtcaccaa	Protospacer
******** ************ *********

10. spacer 2.4|1120031|32|NZ_CP040107|CRISPRCasFinder matches to MF417881 (Uncultured Caudovirales phage clone 7AX_3, partial genome) position: , mismatch: 2, identity: 0.938

tcaccaaaacagtgacaaaaactgtcaccaaa	CRISPR spacer
tcaccaaatcagtgacaaaaagtgtcaccaaa	Protospacer
******** ************ **********

11. spacer 5.1|2481480|38|NZ_CP040107|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

12. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 2, identity: 0.943

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
ttcagcgcctgatgcgacgctggcgcgtcttatca	Protospacer
**********************.***********

13. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 3, identity: 0.914

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
tgtaacgcctgatgcgacgctgacgcgtcttatct	Protospacer
* .*.******************************

14. spacer 6.2|3195560|25|NZ_CP040107|PILER-CR matches to NZ_CP015341 (Lactobacillus brevis strain 100D8 plasmid unnamed3, complete sequence) position: , mismatch: 4, identity: 0.84

tttacctctttcaggtaaactttat	CRISPR spacer
ggtatctcattcaggtaaactttat	Protospacer
  **.*** ****************

15. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 5, identity: 0.857

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
accagcgcctgatgcgccgctgtcgcgtcttatca	Protospacer
 .************** ***** ***********

16. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP044308 (Escherichia coli strain C27A plasmid pC27A-3, complete sequence) position: , mismatch: 5, identity: 0.857

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
ctcaacgcctgatgcgacgctggcgcgtcttagcg	Protospacer
.***.*****************.********* *

17. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 6, identity: 0.829

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gtttatgccagatgcgacgctgacgcgtcttatct	Protospacer
 *. ..*** *************************

18. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 6, identity: 0.829

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
tcagatgcctgatgcgacgctgacgcgtcttatca	Protospacer
*. ...****************************

19. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 6, identity: 0.829

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
tcagatgcctgatgcgacgctgacgcgtcttatca	Protospacer
*. ...****************************

20. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 6, identity: 0.829

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
tcagatgcctgatgcgacgctgacgcgtcttatca	Protospacer
*. ...****************************

21. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 6, identity: 0.829

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
tcagatgcctgatgcgacgctgacgcgtcttatca	Protospacer
*. ...****************************

22. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 6, identity: 0.829

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
tctgatgcctgatgcgacgctgacgcgtcttatca	Protospacer
*.....****************************

23. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to MT230312 (Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence) position: , mismatch: 6, identity: 0.829

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
attgaagcctgatgcgacgctgacgcgtcttatca	Protospacer
 *... ****************************

24. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_AP023209 (Escherichia coli strain TUM18781 plasmid pMTY18781-4, complete sequence) position: , mismatch: 6, identity: 0.829

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gccgatgcctgatgcgacgctgacgcgtcttatca	Protospacer
 .*...****************************

25. spacer 2.3|1120153|31|NZ_CP040107|CRT matches to NC_015512 (Haliscomenobacter hydrossis DSM 1100 plasmid pHALHY02, complete sequence) position: , mismatch: 7, identity: 0.774

gcccaggg---atttgttcaatccagcgtgccgc	CRISPR spacer
---caaagtccatttgttcaacccatcgtgccgc	Protospacer
   **..*   **********.*** ********

26. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 7, identity: 0.8

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
cacgatgcctgatgcgacgctgccgcgtcttatca	Protospacer
. *...**************** ***********

27. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 7, identity: 0.8

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
tgcgctgcctgatgcgacgctaatgcgtcttatca	Protospacer
* *. .***************.*.**********

28. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 7, identity: 0.8

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gctgatgcctgatgcgacgctgacgcgtcttatca	Protospacer
 .....****************************

29. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 7, identity: 0.8

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcaggtgcctgatgcgacgctggcgcgtcttatca	Protospacer
 . .*.****************.***********

30. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 7, identity: 0.8

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gccgatgcctgatgcgacgctgacgcgttttatca	Protospacer
 .*...**********************.*****

31. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 7, identity: 0.8

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gctgatgcctgatgcgacgctgacgcgtcttatca	Protospacer
 .....****************************

32. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 7, identity: 0.8

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcaggtgcctgatgcgacgctggcgcgtcttatca	Protospacer
 . .*.****************.***********

33. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 7, identity: 0.8

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gccgatgcctgatgcgacgctgacgcgttttatca	Protospacer
 .*...**********************.*****

34. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 7, identity: 0.8

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gctgatgcctgatgcgacgctgacgcgtcttatca	Protospacer
 .....****************************

35. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 7, identity: 0.8

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcaggtgcctgatgcgacgctggcgcgtcttatca	Protospacer
 . .*.****************.***********

36. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 7, identity: 0.8

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gccgatgcctgatgcgacgctgacgcgttttatca	Protospacer
 .*...**********************.*****

37. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 7, identity: 0.8

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gctgatgcctgatgcgacgctgacgcgtcttatca	Protospacer
 .....****************************

38. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 7, identity: 0.8

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcaggtgcctgatgcgacgctggcgcgtcttatca	Protospacer
 . .*.****************.***********

39. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 7, identity: 0.8

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gccgatgcctgatgcgacgctgacgcgttttatca	Protospacer
 .*...**********************.*****

40. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 7, identity: 0.8

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
accggtgccagatgcgacgcagacgcgtcttatca	Protospacer
 .*.*.*** ********** *************

41. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 7, identity: 0.8

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gctgatgcctgatgcgacgctgacgcgtcttatca	Protospacer
 .....****************************

42. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 7, identity: 0.8

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
ccaggtgcctgatgcgacgctggcgcgtcttatca	Protospacer
.. .*.****************.***********

43. spacer 2.1|1120031|31|NZ_CP040107|PILER-CR,CRT matches to NC_011370 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG203, complete sequence) position: , mismatch: 8, identity: 0.742

tcaccaaaacagtgacaaaaactgtcaccaa	CRISPR spacer
tcaccaaaacagtgccaaagactcttgactg	Protospacer
************** ****.*** *.. * .

44. spacer 2.1|1120031|31|NZ_CP040107|PILER-CR,CRT matches to NZ_CP032697 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525a, complete sequence) position: , mismatch: 8, identity: 0.742

tcaccaaaacagtgacaaaaactgtcaccaa	CRISPR spacer
tcaccaaaacagtgccaaagactcttgactg	Protospacer
************** ****.*** *.. * .

45. spacer 2.1|1120031|31|NZ_CP040107|PILER-CR,CRT matches to NZ_CP049249 (Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.742

tcaccaaaacagtgacaaaaactgtcaccaa	CRISPR spacer
tcaccaaaacggtgccaaaaactcttgactg	Protospacer
**********.*** ******** *.. * .

46. spacer 2.6|1120153|32|NZ_CP040107|CRISPRCasFinder matches to NC_015512 (Haliscomenobacter hydrossis DSM 1100 plasmid pHALHY02, complete sequence) position: , mismatch: 8, identity: 0.75

gcccaggg---atttgttcaatccagcgtgccgct	CRISPR spacer
---caaagtccatttgttcaacccatcgtgccgca	Protospacer
   **..*   **********.*** ********

47. spacer 3.1|1644408|54|NZ_CP040107|CRISPRCasFinder matches to MT230402 (Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence) position: , mismatch: 8, identity: 0.852

cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
catccggcaatcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacaaa	Protospacer
**. * *** .* .***************** **********************

48. spacer 3.1|1644408|54|NZ_CP040107|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 8, identity: 0.852

cacgccg-catcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
-gctccgacgttcggtgcctgatgcgacgctggcgcgtcttatcaggcctacgag	Protospacer
 .* *** *.*.* **************************************.*.

49. spacer 3.1|1644408|54|NZ_CP040107|CRISPRCasFinder matches to NZ_CP019246 (Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence) position: , mismatch: 8, identity: 0.852

cacgccgcatcctg-tgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
-aggcaccgtgctgatgtctgatgcgacgctggcgcgtcttatcagacctacaaa	Protospacer
 * **  *.* *** **.****************************.********

50. spacer 4.1|2281567|44|NZ_CP040107|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 8, identity: 0.818

ttggcagtgtgcctgatgcgacgctgttcgcgtcttaccaggcc	CRISPR spacer
tgcacaagatgcctgatgcgacgctgtccgcgtcttatcaggcc	Protospacer
*  .**. .******************.*********.******

51. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgccagatgcgacgctggcgcgtcttatct	Protospacer
 . ...*** ************.************

52. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctggcgcgtcttatca	Protospacer
 . ...****************.***********

53. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatca	Protospacer
 . ...***************.************

54. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatca	Protospacer
 . ...***************.************

55. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatca	Protospacer
 . ...***************.************

56. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatca	Protospacer
 . ...***************.************

57. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gccgatgcctgatgcgtcgctgacgcgacttatca	Protospacer
 .*...********** ********** ******

58. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
accgatgcctgatgcgccgctgacgcgacttatca	Protospacer
 .*...********** ********** ******

59. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
accgatgcctgatgcgccgctgacgcgacttatca	Protospacer
 .*...********** ********** ******

60. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctggcgcgtcttatca	Protospacer
 . ...****************.***********

61. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatca	Protospacer
 . ...***************.************

62. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatca	Protospacer
 . ...***************.************

63. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatca	Protospacer
 . ...***************.************

64. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatca	Protospacer
 . ...***************.************

65. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gccgatgcctgatgcgtcgctgacgcgacttatca	Protospacer
 .*...********** ********** ******

66. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
accgatgcctgatgcgccgctgacgcgacttatca	Protospacer
 .*...********** ********** ******

67. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
accgatgcctgatgcgccgctgacgcgacttatca	Protospacer
 .*...********** ********** ******

68. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctggcgcgtcttatca	Protospacer
 . ...****************.***********

69. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatca	Protospacer
 . ...***************.************

70. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatca	Protospacer
 . ...***************.************

71. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatca	Protospacer
 . ...***************.************

72. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatca	Protospacer
 . ...***************.************

73. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gccgatgcctgatgcgtcgctgacgcgacttatca	Protospacer
 .*...********** ********** ******

74. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
accgatgcctgatgcgccgctgacgcgacttatca	Protospacer
 .*...********** ********** ******

75. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
accgatgcctgatgcgccgctgacgcgacttatca	Protospacer
 .*...********** ********** ******

76. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctggcgcgtcttatca	Protospacer
 . ...****************.***********

77. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatca	Protospacer
 . ...***************.************

78. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatca	Protospacer
 . ...***************.************

79. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatca	Protospacer
 . ...***************.************

80. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctaacgcgtcttatca	Protospacer
 . ...***************.************

81. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gccgatgcctgatgcgtcgctgacgcgacttatca	Protospacer
 .*...********** ********** ******

82. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
accgatgcctgatgcgccgctgacgcgacttatca	Protospacer
 .*...********** ********** ******

83. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
accgatgcctgatgcgccgctgacgcgacttatca	Protospacer
 .*...********** ********** ******

84. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
tgaattacctgatgcgacgctggcgcatcttatca	Protospacer
*  * ..***************.***.*******

85. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatacgacgctgacgcgtcttatca	Protospacer
 . ...*******.********************

86. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
ccggatgcctgatgcgacgctggcgcgtcttatca	Protospacer
.. ...****************.***********

87. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatacgacgctgacgcgtcttatca	Protospacer
 . ...*******.********************

88. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 8, identity: 0.771

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
ccggatgcctgatgcgacgctggcgcgtcttatca	Protospacer
.. ...****************.***********

89. spacer 2.4|1120031|32|NZ_CP040107|CRISPRCasFinder matches to NC_011370 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG203, complete sequence) position: , mismatch: 9, identity: 0.719

tcaccaaaacagtgacaaaaactgtcaccaaa	CRISPR spacer
tcaccaaaacagtgccaaagactcttgactgt	Protospacer
************** ****.*** *.. * .

90. spacer 2.4|1120031|32|NZ_CP040107|CRISPRCasFinder matches to NZ_CP032697 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525a, complete sequence) position: , mismatch: 9, identity: 0.719

tcaccaaaacagtgacaaaaactgtcaccaaa	CRISPR spacer
tcaccaaaacagtgccaaagactcttgactgc	Protospacer
************** ****.*** *.. * .

91. spacer 2.4|1120031|32|NZ_CP040107|CRISPRCasFinder matches to NZ_CP049249 (Rhizobium rhizoryzae strain DSM 29514 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.719

tcaccaaaacagtgacaaaaactgtcaccaaa	CRISPR spacer
tcaccaaaacggtgccaaaaactcttgactgc	Protospacer
**********.*** ******** *.. * .

92. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 9, identity: 0.743

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gctgatgcctgatgcgatgctaacgcgtcttatca	Protospacer
 .....***********.***.************

93. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 9, identity: 0.743

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctagcgcgtcttatca	Protospacer
 . ...***************..***********

94. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 9, identity: 0.743

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctagcgcgtcttatca	Protospacer
 . ...***************..***********

95. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 9, identity: 0.743

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctagcgcgtcttatca	Protospacer
 . ...***************..***********

96. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 9, identity: 0.743

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gcagatgcctgatgcgacgctagcgcgtcttatca	Protospacer
 . ...***************..***********

97. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP044308 (Escherichia coli strain C27A plasmid pC27A-3, complete sequence) position: , mismatch: 9, identity: 0.743

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
acggatgcccgatgcgacgctggcgcgtcttatcg	Protospacer
 . ...***.************.***********

98. spacer 7.1|4693366|35|NZ_CP040107|CRISPRCasFinder matches to NZ_CP019246 (Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence) position: , mismatch: 9, identity: 0.743

ttcagcgcctgatgcgacgctgacgcgtcttatct	CRISPR spacer
gctgatgtctgatgcgacgctggcgcgtcttatca	Protospacer
 .....*.**************.***********

99. spacer 3.1|1644408|54|NZ_CP040107|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 10, identity: 0.815

cacgccgcatcctg-tgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
-cagtcgtgtgcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaa	Protospacer
   *.**..* * * ****************..**********************

100. spacer 3.1|1644408|54|NZ_CP040107|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 10, identity: 0.815

cacgccgcatcctg-tgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
-cagtcgtgtgcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaa	Protospacer
   *.**..* * * ****************..**********************

101. spacer 3.1|1644408|54|NZ_CP040107|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 10, identity: 0.815

cacgcc-gcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
-gcgctggtgccggatgcctgatgcgacgctggcgcgtcttatcatgcctacaaa	Protospacer
 .***. *...*  .****************************** *********

102. spacer 3.1|1644408|54|NZ_CP040107|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 10, identity: 0.815

cacgcc-gcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
-gcgctggtgccggatgcctgatgcgacgctggcgcgtcttatcatgcctacaaa	Protospacer
 .***. *...*  .****************************** *********

103. spacer 3.1|1644408|54|NZ_CP040107|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 10, identity: 0.815

cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
cattcggtgcacgatgcctgatgcgacgctgccgcgtcttatcaggcctacaaa	Protospacer
**. * *... * .***************** **********************

104. spacer 3.1|1644408|54|NZ_CP040107|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 10, identity: 0.815

cacgccgcatcctg-tgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
-cagtcgtgtgcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaa	Protospacer
   *.**..* * * ****************..**********************

105. spacer 3.1|1644408|54|NZ_CP040107|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 10, identity: 0.815

cacgccgcatcctg-tgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
-cagtcgtgtgcagatgcctgatgcgacgctaacgcgtcttatcaggcctacaaa	Protospacer
   *.**..* * * ****************..**********************

106. spacer 3.1|1644408|54|NZ_CP040107|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.796

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
cagttatgcgcag------atgcctgatgcgacgctggcgcgtcttatcatgcctacaaa	Protospacer
      ..*** *      .****************************** *********

107. spacer 3.1|1644408|54|NZ_CP040107|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.796

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
cagttgtacgcag------gtgcctgatgcgacgctggcgcgtcttatcatgcctacgag	Protospacer
      .**** *      ******************************* ******.*.

108. spacer 3.1|1644408|54|NZ_CP040107|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.796

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
cagttatgcgcag------atgcctgatgcgacgctggcgcgtcttatcatgcctacaaa	Protospacer
      ..*** *      .****************************** *********

109. spacer 3.1|1644408|54|NZ_CP040107|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.796

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
cagttgtacgcag------gtgcctgatgcgacgctggcgcgtcttatcatgcctacgag	Protospacer
      .**** *      ******************************* ******.*.

110. spacer 3.1|1644408|54|NZ_CP040107|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.796

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
cagttatgcgcag------atgcctgatgcgacgctggcgcgtcttatcatgcctacaaa	Protospacer
      ..*** *      .****************************** *********

111. spacer 3.1|1644408|54|NZ_CP040107|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.796

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
cagttgtacgcag------gtgcctgatgcgacgctggcgcgtcttatcatgcctacgag	Protospacer
      .**** *      ******************************* ******.*.

112. spacer 3.1|1644408|54|NZ_CP040107|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.796

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
cagttatgcgcag------atgcctgatgcgacgctggcgcgtcttatcatgcctacaaa	Protospacer
      ..*** *      .****************************** *********

113. spacer 3.1|1644408|54|NZ_CP040107|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.796

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
cagttgtacgcag------gtgcctgatgcgacgctggcgcgtcttatcatgcctacgag	Protospacer
      .**** *      ******************************* ******.*.

114. spacer 3.1|1644408|54|NZ_CP040107|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 11, identity: 0.796

cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
catccggtaatcaatgcctgatgcgacgctgtcgcgtcttatcaggcctacagc	Protospacer
**. * *.* .* .***************** ********************.

115. spacer 3.1|1644408|54|NZ_CP040107|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.778

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
catttgtgcgctg------atgcctgatgcgacgctgacgcgtcttatcatgcctacaaa	Protospacer
      ..***.*      .*****************.************ *********

116. spacer 3.1|1644408|54|NZ_CP040107|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.778

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
taattgtgcgcag------atgcctgatgcgacgctagcgcgtcttatcatgcctacaaa	Protospacer
      ..*** *      .****************.************* *********

117. spacer 3.1|1644408|54|NZ_CP040107|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.778

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
cagtcgtgcgcag------atgcctgatgcgacgctaacgcgtcttatcaggcctacaaa	Protospacer
      ..*** *      .****************..**********************

118. spacer 3.1|1644408|54|NZ_CP040107|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.778

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
cagtcgtgcgcag------atgcctgatgcgacgctaacgcgtcttatcaggcctacaaa	Protospacer
      ..*** *      .****************..**********************

119. spacer 3.1|1644408|54|NZ_CP040107|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.778

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
catttgtgcgctg------atgcctgatgcgacgctgacgcgtcttatcatgcctacaaa	Protospacer
      ..***.*      .*****************.************ *********

120. spacer 3.1|1644408|54|NZ_CP040107|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.778

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
taattgtgcgcag------atgcctgatgcgacgctagcgcgtcttatcatgcctacaaa	Protospacer
      ..*** *      .****************.************* *********

121. spacer 3.1|1644408|54|NZ_CP040107|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.778

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
cagtcgtgcgcag------atgcctgatgcgacgctaacgcgtcttatcaggcctacaaa	Protospacer
      ..*** *      .****************..**********************

122. spacer 3.1|1644408|54|NZ_CP040107|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.778

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
cagtcgtgcgcag------atgcctgatgcgacgctaacgcgtcttatcaggcctacaaa	Protospacer
      ..*** *      .****************..**********************

123. spacer 3.1|1644408|54|NZ_CP040107|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.778

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
catttgtgcgctg------atgcctgatgcgacgctgacgcgtcttatcatgcctacaaa	Protospacer
      ..***.*      .*****************.************ *********

124. spacer 3.1|1644408|54|NZ_CP040107|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.778

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
taattgtgcgcag------atgcctgatgcgacgctagcgcgtcttatcatgcctacaaa	Protospacer
      ..*** *      .****************.************* *********

125. spacer 3.1|1644408|54|NZ_CP040107|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.778

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
cagtcgtgcgcag------atgcctgatgcgacgctaacgcgtcttatcaggcctacaaa	Protospacer
      ..*** *      .****************..**********************

126. spacer 3.1|1644408|54|NZ_CP040107|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.778

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
cagtcgtgcgcag------atgcctgatgcgacgctaacgcgtcttatcaggcctacaaa	Protospacer
      ..*** *      .****************..**********************

127. spacer 3.1|1644408|54|NZ_CP040107|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.778

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
catttgtgcgctg------atgcctgatgcgacgctgacgcgtcttatcatgcctacaaa	Protospacer
      ..***.*      .*****************.************ *********

128. spacer 3.1|1644408|54|NZ_CP040107|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.778

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
taattgtgcgcag------atgcctgatgcgacgctagcgcgtcttatcatgcctacaaa	Protospacer
      ..*** *      .****************.************* *********

129. spacer 3.1|1644408|54|NZ_CP040107|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.778

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
cagtcgtgcgcag------atgcctgatgcgacgctaacgcgtcttatcaggcctacaaa	Protospacer
      ..*** *      .****************..**********************

130. spacer 3.1|1644408|54|NZ_CP040107|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.778

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
cagtcgtgcgcag------atgcctgatgcgacgctaacgcgtcttatcaggcctacaaa	Protospacer
      ..*** *      .****************..**********************

131. spacer 3.1|1644408|54|NZ_CP040107|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 12, identity: 0.778

cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
caacaattaccaggtgcctgatgcgacgctggcgcgtcttatcatgcctacgag	Protospacer
**     .*.*  ******************************* ******.*.

132. spacer 3.1|1644408|54|NZ_CP040107|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 12, identity: 0.778

------cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
catttgtgcgctg------atgcctgatgcgacgctgacgcgtcttatcatgcctacaaa	Protospacer
      ..***.*      .*****************.************ *********

133. spacer 3.1|1644408|54|NZ_CP040107|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 13, identity: 0.759

cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
catttgtgctctgatgcctgatgcgacgctgacgcgtcttatcatgcctacaat	Protospacer
**. .    **. .*****************.************ ********

134. spacer 3.1|1644408|54|NZ_CP040107|CRISPRCasFinder matches to MT230312 (Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence) position: , mismatch: 14, identity: 0.741

cacgccgcatcctgtgcctgatgcgacgctggcgcgtcttatcaggcctacaaa	CRISPR spacer
tctccggcaattgaagcctgatgcgacgctgacgcgtcttatcaggcctacnag	Protospacer
. . * *** .. . ****************.******************* *.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1229009 : 1242446

Enterobacteria_phage(38.46%)

tail,holin

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001223948.1\|1229009_1229621_+	recombination protein NinG	A0A1U9AJF8	Stx1_converting_phage	2.5e-92	95.6
WP_001028854.1\|1229617_1230283_+	serine/threonine protein phosphatase	Q5TJL8	Enterobacteria_phage	5.0e-131	99.5
WP_001235472.1\|1230279_1230903_+	antitermination protein	K7PM87	Enterobacteria_phage	2.2e-112	98.1
WP_001302581.1\|1231155_1231899_+	hypothetical protein	NA	NA	NA	NA
WP_000499458.1\|1231984_1232152_+	DUF3927 family protein	NA	NA	NA	NA
WP_000143065.1\|1232559_1234413_+	DUF1737 domain-containing protein	H6WZJ9	Escherichia_phage	0.0e+00	97.9
WP_000284517.1\|1234562_1234778_+\|holin	class II holin family protein	A0A0P0ZC45	Stx2-converting_phage	4.5e-33	98.6
WP_000731241.1\|1234782_1235127_+	YdfR family protein	A0A0P0ZD64	Stx2-converting_phage	1.7e-58	99.1
WP_001171554.1\|1235483_1235864_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	1.4e-66	100.0
WP_000612591.1\|1235860_1236208_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.2e-61	100.0
WP_001023396.1\|1236825_1237095_+\|tail	phage tail fiber C-terminal domain-containing protein	B6DZB8	Enterobacteria_phage	3.8e-45	100.0
WP_000442132.1\|1237255_1237678_+	DUF1076 domain-containing protein	B6DZB9	Enterobacteria_phage	5.7e-72	97.0
WP_001301665.1\|1237807_1238866_-	T3SS effector EspW	NA	NA	NA	NA
WP_001144077.1\|1238944_1239595_-	T3SS effector NleG family protein	B6DZZ5	Stx2-converting_phage	2.8e-25	37.2
WP_001132157.1\|1239777_1240368_+	T3SS effector guanine nucleotide exchange factor EspM2	NA	NA	NA	NA
WP_001217542.1\|1240869_1241118_-	DinI-like family protein	A5LH55	Enterobacteria_phage	3.1e-38	98.8
WP_000162574.1\|1241963_1242446_-	SsrA-binding protein SmpB	W5RAM5	Staphylococcus_phage	4.0e-29	46.8

DBSCAN-SWA_2

1521342 : 1526768

Enterobacteria_phage(50.0%)

integrase

attL 1510330:1510346|attR 1528964:1528980

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1510330:1510346	attL	NA	NA	NA	NA
WP_000950857.1\|1521342_1521912_+	hypothetical protein	Q716G6	Shigella_phage	4.6e-69	99.3
WP_000403517.1\|1521911_1522379_+	DUF2824 family protein	Q2A0B3	Sodalis_phage	1.7e-64	74.7
WP_000960724.1\|1522365_1523046_+	DNA transfer protein	G5DA80	Enterobacteria_phage	1.8e-59	71.0
WP_000257010.1\|1523055_1524192_+	phage DNA ejection protein	Q716G3	Shigella_phage	1.4e-80	72.8
WP_000958700.1\|1524366_1525524_-\|integrase	prophage integrase IntS	E7DYQ6	Enterobacteria_phage	2.2e-222	100.0
WP_000368131.1\|1525835_1526768_-	formate/nitrite transporter family protein	E7DYY8	Enterobacteria_phage	1.2e-167	100.0
1528964:1528980	attR	NA	NA	NA	NA

DBSCAN-SWA_3

1771049 : 1872000

110

Enterobacteria_phage(50.68%)

protease,tRNA,terminase,portal,tail,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000569336.1\|1771049_1771976_+	glycine betaine ABC transporter ATP binding protein YehX	G3M9Y6	Bacillus_virus	4.8e-23	30.8
WP_000783120.1\|1771980_1772712_+	glycine betaine ABC transporter permease YehW	NA	NA	NA	NA
WP_001216963.1\|1772692_1772800_-	protein YohO	NA	NA	NA	NA
WP_027868261.1\|1772859_1773561_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.6e-103	100.0
WP_000063648.1\|1773581_1774868_-	DUF3596 domain-containing protein	Q9EY96	Enterobacteria_phage	7.6e-253	100.0
WP_001193437.1\|1774901_1775156_-	excisionase family protein	Q859D3	Escherichia_coli_phage	3.0e-44	100.0
WP_000556583.1\|1775174_1775309_-	hypothetical protein	A0A0P0ZDP5	Stx2-converting_phage	4.9e-22	100.0
WP_000457728.1\|1775312_1775555_-	DUF4222 domain-containing protein	B6DZ51	Enterobacteria_phage	1.5e-37	100.0
WP_000610375.1\|1775642_1776005_-	DUF551 domain-containing protein	Q9EY98	Enterobacteria_phage	1.8e-71	100.0
WP_000207903.1\|1776001_1776358_-	hypothetical protein	A0A0N7KZJ2	Stx2-converting_phage	3.1e-63	100.0
WP_001356547.1\|1776691_1776868_-	hypothetical protein	B6DZ55	Enterobacteria_phage	4.6e-28	100.0
WP_001289954.1\|1776869_1777817_-	ead/Ea22-like family protein	A0A0P0ZE96	Stx2-converting_phage	3.6e-183	100.0
WP_000763383.1\|1777813_1778035_-	TraR/DksA family transcriptional regulator	A0A1I9LJM6	Stx_converting_phage	2.9e-35	100.0
WP_001444000.1\|1778133_1778415_-	cell division protein ZapA	A0A0P0ZBQ0	Stx2-converting_phage	1.9e-47	100.0
WP_000548547.1\|1778425_1778617_-	DUF1382 family protein	A0A1I9LJM8	Stx_converting_phage	1.9e-27	100.0
WP_032195523.1\|1778589_1778772_-	DUF1317 domain-containing protein	A0A0P0ZAS9	Stx2-converting_phage	1.6e-28	98.3
WP_000186740.1\|1778771_1779449_-	YqaJ viral recombinase family protein	A0A1I9LJM9	Stx_converting_phage	4.6e-132	100.0
WP_000100847.1\|1779445_1780231_-	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	6.3e-149	100.0
WP_000995395.1\|1780236_1780533_-	host-nuclease inhibitor protein Gam	Q9EYA6	Enterobacteria_phage	4.3e-50	100.0
WP_023148105.1\|1780608_1780899_-	hypothetical protein	K7P6H3	Enterobacteria_phage	5.0e-27	85.1
WP_001362421.1\|1781402_1783010_-	SIR2 family protein	A0A1S5SA14	Streptococcus_phage	6.9e-94	49.0
WP_000712399.1\|1783116_1783809_-	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	2.5e-109	86.1
WP_001182876.1\|1784172_1784712_+	hypothetical protein	M9NZI6	Enterobacteria_phage	2.6e-61	66.1
WP_000147884.1\|1784708_1785728_+	replication protein	A0A0M5M7Y1	Salmonella_phage	9.7e-110	63.8
WP_000788906.1\|1785724_1786426_+	Replication protein 14	Q9EYB6	Enterobacteria_phage	5.8e-130	100.0
WP_000145928.1\|1786422_1786707_+	hypothetical protein	A0A0P0ZCJ0	Stx2-converting_phage	3.7e-43	96.7
WP_001481254.1\|1786934_1787132_+	hypothetical protein	NA	NA	NA	NA
WP_000390541.1\|1787175_1787457_+	hypothetical protein	NA	NA	NA	NA
WP_072141214.1\|1787547_1787649_+	hypothetical protein	NA	NA	NA	NA
WP_001053021.1\|1787645_1788101_+	DNA base-flipping protein YbcN	I6PD71	Cronobacter_phage	5.9e-59	66.2
WP_000224907.1\|1788100_1788271_+	hypothetical protein	K7P7K0	Enterobacteria_phage	5.3e-13	67.9
WP_000774504.1\|1788263_1788554_+	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	2.8e-46	92.7
WP_001099712.1\|1788550_1788913_+	crossover junction endodeoxyribonuclease RusA	K7PM48	Enterobacteria_phage	4.3e-60	96.5
WP_000971055.1\|1788909_1789050_+	YlcG family protein	K7PHH3	Enterobacteria_phage	1.1e-08	69.8
WP_001204769.1\|1789135_1789570_+	antitermination protein	G9L695	Escherichia_phage	1.3e-79	97.2
WP_001356551.1\|1789818_1789971_+	DNA methylase	A0A2R2Z327	Escherichia_phage	4.0e-20	100.0
WP_000142932.1\|1790774_1792721_+	DUF1737 domain-containing protein	A0A075M342	Escherichia_Stx1-converting_recombinant_phage	0.0e+00	98.1
WP_000143458.1\|1792858_1793038_+	DUF1378 family protein	A0A2R2Z345	Escherichia_phage	2.2e-25	100.0
WP_001290230.1\|1793078_1793324_+	DUF826 domain-containing protein	A0A0P0ZGR2	Escherichia_phage	8.8e-17	100.0
WP_000284506.1\|1793401_1793617_+\|holin	class II holin family protein	Q9ZWW2	Enterobacteria_phage	6.9e-34	100.0
WP_000087728.1\|1793621_1794155_+	lysozyme	A0A1I9LJR4	Stx_converting_phage	1.8e-102	100.0
WP_001056806.1\|1794425_1794995_+	hypothetical protein	A0A1I9LJR6	Stx_converting_phage	3.1e-105	100.0
WP_000539792.1\|1794994_1795141_+	hypothetical protein	A0A0P0ZE99	Stx2-converting_phage	2.6e-16	100.0
WP_012816791.1\|1795368_1795554_+	membrane protein	A0A0P0ZCT3	Stx2-converting_phage	1.2e-18	100.0
WP_000348565.1\|1796071_1796548_+	DUF1441 family protein	Q9EYD0	Enterobacteria_phage	2.1e-83	100.0
WP_001077626.1\|1796544_1798668_+\|terminase	phage terminase large subunit family protein	S5MDQ1	Escherichia_phage	0.0e+00	99.0
WP_000102415.1\|1798664_1798877_+	hypothetical protein	S5MBY8	Escherichia_phage	3.0e-29	98.6
WP_000974568.1\|1798876_1800379_+\|portal	phage portal protein	S5MW34	Escherichia_phage	6.3e-291	100.0
WP_001114421.1\|1800323_1802348_+\|protease	Clp protease ClpP	S5M7Q8	Escherichia_phage	0.0e+00	99.7
WP_001097065.1\|1802435_1802762_+	DUF2190 family protein	Q9EYD5	Enterobacteria_phage	6.1e-50	100.0
WP_001281350.1\|1802754_1803036_+	DNA breaking-rejoining protein	Q8VNN4	Enterobacteria_phage	3.9e-45	97.8
WP_000974966.1\|1803038_1803662_+\|tail	phage tail protein	Q9EYD6	Enterobacteria_phage	6.6e-101	100.0
WP_000682716.1\|1803674_1804073_+\|tail	tail protein	Q9EYD7	Enterobacteria_phage	5.9e-71	100.0
WP_024748478.1\|1804080_1804833_+\|tail	phage tail protein	Q687F6	Enterobacteria_phage	2.9e-135	99.6
WP_000479062.1\|1804846_1805269_+\|tail	phage minor tail protein G	Q687F5	Enterobacteria_phage	2.2e-71	97.9
WP_000532073.1\|1805295_1805604_+\|tail	phage tail assembly protein T	Q687F4	Enterobacteria_phage	1.3e-54	100.0
WP_115333668.1\|1805647_1808293_+\|tail	phage tail tape measure protein	Q687F3	Enterobacteria_phage	0.0e+00	99.8
WP_000847298.1\|1808289_1808619_+\|tail	phage tail protein	Q687F2	Enterobacteria_phage	4.3e-59	100.0
WP_001151105.1\|1808618_1809317_+\|tail	phage minor tail protein L	A0A0P0ZBE3	Stx2-converting_phage	1.2e-130	97.8
WP_000194801.1\|1809327_1810071_+\|tail	phage tail protein	Q9EYE4	Enterobacteria_phage	7.0e-150	99.6
WP_071601640.1\|1810016_1810646_+\|tail	tail assembly protein	A0A0P0ZEN7	Stx2-converting_phage	2.3e-101	95.2
WP_171878332.1\|1810886_1814366_+	DUF1983 domain-containing protein	B6DZB5	Enterobacteria_phage	0.0e+00	99.5
WP_001230508.1\|1814433_1815033_+	Ail/Lom family outer membrane beta-barrel protein	A0A0P0ZE39	Stx2-converting_phage	1.2e-110	100.0
WP_088136427.1\|1815097_1816267_+\|tail	prophage tail fiber N-terminal domain-containing protein	B6DZB7	Enterobacteria_phage	1.1e-83	99.5
WP_001023396.1\|1816268_1816538_+\|tail	phage tail fiber C-terminal domain-containing protein	B6DZB8	Enterobacteria_phage	3.8e-45	100.0
WP_072142879.1\|1816698_1817115_+	DUF1076 domain-containing protein	B6DZB9	Enterobacteria_phage	2.2e-76	100.0
WP_001143784.1\|1817196_1817838_+	DUF1076 domain-containing protein	B6DZC0	Enterobacteria_phage	6.8e-109	100.0
WP_001261939.1\|1817999_1818248_-	DinI-like family protein	B6DZC1	Enterobacteria_phage	1.4e-38	100.0
WP_001301761.1\|1818762_1820448_+	two-component regulatory system sensor histidine kinase BtsS	Q9EYF3	Enterobacteria_phage	1.7e-305	100.0
WP_000598641.1\|1820444_1821164_+	two-component system response regulator BtsR	NA	NA	NA	NA
WP_001295430.1\|1821210_1821681_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
WP_001295429.1\|1821722_1822184_-	YehR family lipoprotein	Q9EYF5	Enterobacteria_phage	1.9e-76	100.0
WP_001087225.1\|1822308_1824312_-	SWIM zinc finger family protein	Q9EYF6	Enterobacteria_phage	0.0e+00	100.0
WP_001302810.1\|1824308_1825445_-	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	1.9e-167	100.0
WP_000528951.1\|1825437_1826169_-	hypothetical protein	NA	NA	NA	NA
WP_001294377.1\|1826187_1827717_-	hypothetical protein	NA	NA	NA	NA
WP_001302026.1\|1827727_1828816_-	MoxR family ATPase	NA	NA	NA	NA
WP_000636932.1\|1830056_1830374_-	hypothetical protein	NA	NA	NA	NA
WP_000356841.1\|1830435_1834065_-	DUF4132 domain-containing protein	NA	NA	NA	NA
WP_001301615.1\|1841021_1843055_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.4e-54	27.6
WP_001005448.1\|1843186_1844296_+	iron-sulfur cluster carrier protein ApbC	NA	NA	NA	NA
WP_010904812.1\|1844557_1844839_+	DUF2574 family protein	NA	NA	NA	NA
WP_000682830.1\|1845130_1845673_+	fimbrial protein	NA	NA	NA	NA
WP_000677409.1\|1845760_1846435_+	fimbria/pilus periplasmic chaperone	NA	NA	NA	NA
WP_000945390.1\|1846450_1848931_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
WP_001301545.1\|1848941_1849976_+	fimbrial protein	NA	NA	NA	NA
WP_000153070.1\|1850057_1850396_-	Ni(II)/Co(II) efflux transporter accessory subunit RcnB	NA	NA	NA	NA
WP_000134627.1\|1850613_1851471_-	nickel/cobalt efflux protein RcnA	NA	NA	NA	NA
WP_000019944.1\|1851591_1851864_+	Ni(II)/Co(II)-binding transcriptional repressor RcnR	NA	NA	NA	NA
WP_000735648.1\|1851973_1852288_-	outer membrane protein	NA	NA	NA	NA
WP_000836936.1\|1852297_1852645_-	hypothetical protein	NA	NA	NA	NA
WP_000141034.1\|1853695_1853935_-	hypothetical protein	NA	NA	NA	NA
WP_001195634.1\|1854268_1855057_+	hydroxyethylthiazole kinase	NA	NA	NA	NA
WP_000822268.1\|1855053_1855854_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
WP_001301907.1\|1855918_1856737_+	glycoside hydrolase family 25 protein	D0R7H8	Paenibacillus_phage	4.2e-23	37.6
WP_000434038.1\|1856788_1857535_+	GntR family transcriptional regulator	NA	NA	NA	NA
WP_000011970.1\|1857508_1858474_-	kinase	NA	NA	NA	NA
WP_000846238.1\|1858470_1859475_-	ADP-ribosylglycohydrolase family protein	A0A1S6UB21	Serratia_phage	4.9e-13	29.4
WP_024177454.1\|1859471_1860749_-	MFS transporter	NA	NA	NA	NA
WP_000129551.1\|1861005_1862058_+	class I fructose-bisphosphate aldolase	NA	NA	NA	NA
WP_001301486.1\|1862356_1863211_+	tagatose-bisphosphate aldolase subunit GatY	NA	NA	NA	NA
WP_000853846.1\|1863239_1864502_+	tagatose-bisphosphate aldolase subunit GatZ	NA	NA	NA	NA
WP_000182899.1\|1864511_1864964_+	PTS galactitol transporter subunit IIA	NA	NA	NA	NA
WP_000823288.1\|1864994_1865279_+	PTS galactitol transporter subunit IIB	NA	NA	NA	NA
WP_000490697.1\|1865282_1866638_+	galactitol permease IIC component	NA	NA	NA	NA
WP_000844219.1\|1866685_1867726_+	galactitol-1-phosphate 5-dehydrogenase	NA	NA	NA	NA
WP_000178551.1\|1867825_1868605_+	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
WP_000807362.1\|1868686_1869586_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	1.3e-12	29.0
WP_001303579.1\|1869991_1870309_+	hypothetical protein	NA	NA	NA	NA
WP_000476014.1\|1870638_1872000_-\|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	Q6DW11	Phage_TP	1.9e-217	99.7

DBSCAN-SWA_4

1958017 : 2091556

170

Stx2-converting_phage(57.69%)

protease,lysis,terminase,transposase,tail,holin,head,integrase,capsid

attL 1959197:1959256|attR 2016609:2072627

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001007946.1\|1958017_1959196_+\|integrase	site-specific integrase	A0A0P0ZCE7	Stx2-converting_phage	1.1e-232	100.0
WP_000132739.1\|1959176_1959368_-	AlpA family phage regulatory protein	A0A0P0ZBL0	Stx2-converting_phage	1.7e-31	100.0
1959197:1959256	attL	NA	NA	NA	NA
WP_001281188.1\|1959445_1959790_-	hypothetical protein	A0A0P0ZB93	Stx2-converting_phage	9.0e-60	100.0
WP_000610373.1\|1959977_1960328_-	DUF551 domain-containing protein	A0A0N7KZ94	Stx2-converting_phage	7.8e-67	100.0
WP_001289930.1\|1961194_1962142_-	ead/Ea22-like family protein	A0A0P0ZBW7	Stx2-converting_phage	4.7e-183	100.0
WP_000763383.1\|1962138_1962360_-	TraR/DksA family transcriptional regulator	A0A1I9LJM6	Stx_converting_phage	2.9e-35	100.0
WP_001444000.1\|1962458_1962740_-	cell division protein ZapA	A0A0P0ZBQ0	Stx2-converting_phage	1.9e-47	100.0
WP_000548544.1\|1962750_1962942_-	DUF1382 family protein	B6ETA2	Enterobacteria_phage	3.3e-27	100.0
WP_000682306.1\|1962914_1963097_-	DUF1317 domain-containing protein	A0A0N7CHV0	Escherichia_phage	4.3e-29	100.0
WP_000186848.1\|1963093_1963774_-	YqaJ viral recombinase family protein	A0A0P0ZCD4	Stx2-converting_phage	1.6e-132	100.0
WP_001302855.1\|1963770_1964556_-	phage recombination protein Bet	A0A0N7BTT9	Escherichia_phage	6.3e-149	100.0
WP_000995486.1\|1964561_1964858_-	host-nuclease inhibitor protein Gam	A0A0N7BTR9	Escherichia_phage	3.3e-50	100.0
WP_000372937.1\|1964932_1965076_-	host cell division inhibitory peptide Kil	A0A0N7C2U2	Escherichia_phage	1.2e-18	100.0
WP_001198861.1\|1965044_1965209_-\|protease	protease FtsH-inhibitory lysogeny factor CIII	Q776Q5	Enterobacteria_phage	1.1e-26	100.0
WP_000065362.1\|1965281_1965650_-	DUF2528 family protein	A0A0N7C1W2	Escherichia_phage	2.0e-65	100.0
WP_000394299.1\|1965832_1966084_-	hypothetical protein	A4KWV4	Enterobacteria_phage	5.6e-43	100.0
WP_000088203.1\|1966142_1966415_-	hypothetical protein	A0A0N7C217	Escherichia_phage	5.7e-41	100.0
WP_000438343.1\|1966392_1966575_-	hypothetical protein	A0A0N7C057	Escherichia_phage	2.8e-28	100.0
WP_001130059.1\|1967143_1967665_-	hypothetical protein	A0A0N7BTU4	Escherichia_phage	1.8e-88	100.0
WP_001302016.1\|1968166_1968862_-	LexA family transcriptional regulator	A0A0N7BTS4	Escherichia_phage	8.6e-134	100.0
WP_000067727.1\|1968936_1969152_+	helix-turn-helix transcriptional regulator	A0A0N7C2U7	Escherichia_phage	2.2e-35	100.0
WP_000442612.1\|1969293_1969590_+	hypothetical protein	A4KWW1	Enterobacteria_phage	4.0e-48	100.0
WP_000166961.1\|1969622_1969784_+	hypothetical protein	Q76H53	Enterobacteria_phage	1.3e-21	100.0
WP_000539354.1\|1969770_1970592_+	replication protein	A0A0N7KZ97	Stx2-converting_phage	2.0e-153	100.0
WP_001248388.1\|1970588_1971965_+	AAA family ATPase	A0A0P0ZC27	Stx2-converting_phage	5.7e-254	100.0
WP_001220560.1\|1972043_1972655_+	HNH endonuclease	A0A0P0ZBS0	Stx2-converting_phage	5.6e-113	100.0
WP_000344569.1\|1973118_1973451_+	hypothetical protein	A0A0P0ZCF4	Stx2-converting_phage	3.3e-59	100.0
WP_000103678.1\|1973583_1973799_+	hypothetical protein	A0A0N7KZ98	Stx2-converting_phage	7.7e-33	100.0
WP_001449504.1\|1973809_1974046_+	restriction alleviation protein, Lar family	Q687G3	Enterobacteria_phage	9.3e-40	100.0
WP_001303571.1\|1974002_1974449_+	recombination protein NinB	Q8VNP6	Enterobacteria_phage	2.4e-81	100.0
WP_000153268.1\|1974445_1974973_+	phage N-6-adenine-methyltransferase	Q9EYC2	Enterobacteria_phage	1.6e-100	100.0
WP_001254256.1\|1974969_1975152_+	NinE family protein	A0A0N7C1X3	Escherichia_phage	5.7e-29	100.0
WP_000208500.1\|1975426_1976191_+	phage antirepressor Ant	A0A0P0ZB11	Stx2-converting_phage	1.4e-121	100.0
WP_001004016.1\|1976265_1976988_+	phage antirepressor KilAC domain-containing protein	A0A0P0ZCB2	Stx2-converting_phage	6.0e-130	100.0
WP_001108004.1\|1976987_1977593_+	recombination protein NinG	Q5TJL9	Enterobacteria_phage	3.3e-97	100.0
WP_001028858.1\|1977589_1978261_+	serine/threonine protein phosphatase	Q5TJL8	Enterobacteria_phage	2.4e-133	100.0
WP_000512807.1\|1978251_1978740_+	late gene antiterminator protein	Q5TJL7	Enterobacteria_phage	7.0e-90	100.0
WP_000649751.1\|1979389_1980349_+	Shiga toxin Stx2c subunit A	Q5TJL6	Enterobacteria_phage	4.3e-176	100.0
WP_000738080.1\|1980360_1980630_+	Shiga toxin Stx2c subunit B	Q5TJL5	Enterobacteria_phage	2.1e-43	100.0
WP_001303568.1\|1980926_1981250_-	anti-adapter protein IraM	Q8HAJ1	Enterobacteria_phage	6.9e-62	100.0
WP_000143112.1\|1981493_1983431_+	SASA family carbohydrate esterase	A0A0P0ZBP4	Stx2-converting_phage	0.0e+00	99.8
WP_000143458.1\|1983567_1983747_+	DUF1378 family protein	A0A2R2Z345	Escherichia_phage	2.2e-25	100.0
WP_001290231.1\|1983787_1984060_+	DUF826 domain-containing protein	A0A0P0ZBB8	Stx2-converting_phage	2.2e-21	100.0
WP_000284515.1\|1984136_1984352_+\|holin	class II holin family protein	A0A0P0ZC45	Stx2-converting_phage	2.0e-33	100.0
WP_000075132.1\|1984351_1984849_+	lysozyme RrrD	A0A0N7KZA0	Stx2-converting_phage	2.6e-92	100.0
WP_000092318.1\|1984845_1985283_+\|lysis	lysis protein	A0A0P0ZBQ9	Stx2-converting_phage	2.0e-72	100.0
WP_000839224.1\|1985485_1985983_+	KilA-N domain-containing protein	A0A0P0ZBU2	Stx2-converting_phage	3.6e-94	100.0
WP_001283921.1\|1985979_1986237_+	hypothetical protein	A0A0P0ZBT1	Stx2-converting_phage	5.0e-39	100.0
WP_000095749.1\|1986699_1986927_-	DUF3950 domain-containing protein	A0A0P0ZCA1	Stx2-converting_phage	3.9e-35	100.0
WP_001303046.1\|1986968_1987334_+	HNH endonuclease	A0A0P0ZCH0	Stx2-converting_phage	2.0e-65	100.0
WP_000958396.1\|1987624_1988188_+\|terminase	terminase small subunit	A0A0P0ZCQ9	Stx2-converting_phage	2.8e-90	100.0
WP_162829202.1\|1988856_1990070_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	7.6e-170	100.0
WP_000173024.1\|1991222_1993160_+\|capsid	phage major capsid protein	A0A0P0ZAJ3	Stx2-converting_phage	0.0e+00	99.7
WP_001063023.1\|1993204_1993426_+	hypothetical protein	A0A0P0ZD92	Stx2-converting_phage	3.8e-35	98.6
WP_000125990.1\|1995952_1996279_+\|head,tail	phage gp6-like head-tail connector protein	A0A0P0ZBH1	Stx2-converting_phage	9.2e-54	100.0
WP_001007905.1\|1996288_1996639_+\|head	phage head closure protein	A0A0P0ZB28	Stx2-converting_phage	1.6e-59	100.0
WP_000573374.1\|1996635_1997082_+	HK97 gp10 family phage protein	A0A0P0ZCD2	Stx2-converting_phage	8.1e-77	100.0
WP_000133388.1\|1997078_1997423_+	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	1.4e-57	100.0
WP_001275508.1\|1997481_1998198_+\|tail	tail protein	A0A0P0ZD29	Stx2-converting_phage	2.9e-129	100.0
WP_001030063.1\|1998203_1998578_+\|tail	phage tail assembly chaperone	A0A0N7KZA2	Stx2-converting_phage	7.8e-65	100.0
WP_001453698.1\|1998673_1998883_+	DUF4035 domain-containing protein	A0A0P0ZDE6	Stx2-converting_phage	2.0e-33	100.0
WP_015994262.1\|1998934_2002177_+\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	0.0e+00	100.0
WP_000807954.1\|2002169_2002511_+\|tail	phage tail protein	A0A0P0ZBQ8	Stx2-converting_phage	5.1e-63	100.0
WP_001179515.1\|2002510_2003209_+\|tail	phage minor tail protein L	A0A0P0ZD77	Stx2-converting_phage	6.6e-134	100.0
WP_001302649.1\|2003225_2003546_-	Arc family DNA-binding protein	A0A0P0ZBD1	Stx2-converting_phage	3.0e-49	100.0
WP_001154345.1\|2003653_2003827_+	Arc family DNA-binding protein	A0A0P0ZC65	Stx2-converting_phage	3.4e-23	100.0
WP_001416667.1\|2003897_2004821_+	phage antirepressor Ant	A0A0P0ZBT0	Stx2-converting_phage	7.6e-178	100.0
WP_024748453.1\|2004874_2005612_+\|tail	phage tail protein	A0A0P0ZDJ9	Stx2-converting_phage	5.0e-148	98.4
WP_129137391.1\|2005557_2006190_+\|tail	tail assembly protein	Q6H9T3	Enterobacteria_phage	3.5e-102	95.7
WP_000515107.1\|2006450_2009930_+	host specificity protein J	A0A0P0ZBW1	Stx2-converting_phage	0.0e+00	100.0
WP_001230314.1\|2009996_2010596_+	Ail/Lom family outer membrane beta-barrel protein	A0A0P0ZBV0	Stx2-converting_phage	1.8e-111	100.0
WP_000268993.1\|2010660_2011974_+\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0P0ZCC1	Stx2-converting_phage	2.8e-85	100.0
WP_001023452.1\|2011975_2012245_+\|tail	phage tail fiber C-terminal domain-containing protein	Q687E5	Enterobacteria_phage	6.4e-45	100.0
WP_000491542.1\|2012385_2013261_+	hypothetical protein	A0A0P0ZCT1	Stx2-converting_phage	1.5e-162	100.0
WP_001121226.1\|2013485_2014136_-	DUF1076 domain-containing protein	B6ETE1	Enterobacteria_phage	4.1e-122	99.5
WP_001007946.1\|2015429_2016608_+\|integrase	site-specific integrase	A0A0P0ZCE7	Stx2-converting_phage	1.1e-232	100.0
WP_000132739.1\|2016588_2016780_-	AlpA family phage regulatory protein	A0A0P0ZBL0	Stx2-converting_phage	1.7e-31	100.0
WP_001281188.1\|2016857_2017202_-	hypothetical protein	A0A0P0ZB93	Stx2-converting_phage	9.0e-60	100.0
WP_000610373.1\|2017389_2017740_-	DUF551 domain-containing protein	A0A0N7KZ94	Stx2-converting_phage	7.8e-67	100.0
WP_001289930.1\|2018606_2019554_-	ead/Ea22-like family protein	A0A0P0ZBW7	Stx2-converting_phage	4.7e-183	100.0
WP_000763383.1\|2019550_2019772_-	TraR/DksA family transcriptional regulator	A0A1I9LJM6	Stx_converting_phage	2.9e-35	100.0
WP_001444000.1\|2019870_2020152_-	cell division protein ZapA	A0A0P0ZBQ0	Stx2-converting_phage	1.9e-47	100.0
WP_000548544.1\|2020162_2020354_-	DUF1382 family protein	B6ETA2	Enterobacteria_phage	3.3e-27	100.0
WP_000682306.1\|2020326_2020509_-	DUF1317 domain-containing protein	A0A0N7CHV0	Escherichia_phage	4.3e-29	100.0
WP_000186848.1\|2020505_2021186_-	YqaJ viral recombinase family protein	A0A0P0ZCD4	Stx2-converting_phage	1.6e-132	100.0
WP_001302855.1\|2021182_2021968_-	phage recombination protein Bet	A0A0N7BTT9	Escherichia_phage	6.3e-149	100.0
WP_000995486.1\|2021973_2022270_-	host-nuclease inhibitor protein Gam	A0A0N7BTR9	Escherichia_phage	3.3e-50	100.0
WP_000372937.1\|2022344_2022488_-	host cell division inhibitory peptide Kil	A0A0N7C2U2	Escherichia_phage	1.2e-18	100.0
WP_001198861.1\|2022456_2022621_-\|protease	protease FtsH-inhibitory lysogeny factor CIII	Q776Q5	Enterobacteria_phage	1.1e-26	100.0
WP_000065362.1\|2022693_2023062_-	DUF2528 family protein	A0A0N7C1W2	Escherichia_phage	2.0e-65	100.0
WP_000394299.1\|2023244_2023496_-	hypothetical protein	A4KWV4	Enterobacteria_phage	5.6e-43	100.0
WP_000088203.1\|2023554_2023827_-	hypothetical protein	A0A0N7C217	Escherichia_phage	5.7e-41	100.0
WP_000438343.1\|2023804_2023987_-	hypothetical protein	A0A0N7C057	Escherichia_phage	2.8e-28	100.0
WP_001130059.1\|2024555_2025077_-	hypothetical protein	A0A0N7BTU4	Escherichia_phage	1.8e-88	100.0
WP_001302016.1\|2025578_2026274_-	LexA family transcriptional regulator	A0A0N7BTS4	Escherichia_phage	8.6e-134	100.0
WP_000067727.1\|2026348_2026564_+	helix-turn-helix transcriptional regulator	A0A0N7C2U7	Escherichia_phage	2.2e-35	100.0
WP_000442612.1\|2026705_2027002_+	hypothetical protein	A4KWW1	Enterobacteria_phage	4.0e-48	100.0
WP_000166961.1\|2027034_2027196_+	hypothetical protein	Q76H53	Enterobacteria_phage	1.3e-21	100.0
WP_000539354.1\|2027182_2028004_+	replication protein	A0A0N7KZ97	Stx2-converting_phage	2.0e-153	100.0
WP_001248388.1\|2028000_2029377_+	AAA family ATPase	A0A0P0ZC27	Stx2-converting_phage	5.7e-254	100.0
WP_001220560.1\|2029455_2030067_+	HNH endonuclease	A0A0P0ZBS0	Stx2-converting_phage	5.6e-113	100.0
WP_000344569.1\|2030530_2030863_+	hypothetical protein	A0A0P0ZCF4	Stx2-converting_phage	3.3e-59	100.0
WP_000103678.1\|2030995_2031211_+	hypothetical protein	A0A0N7KZ98	Stx2-converting_phage	7.7e-33	100.0
WP_001449504.1\|2031221_2031458_+	restriction alleviation protein, Lar family	Q687G3	Enterobacteria_phage	9.3e-40	100.0
WP_001303571.1\|2031414_2031861_+	recombination protein NinB	Q8VNP6	Enterobacteria_phage	2.4e-81	100.0
WP_000153268.1\|2031857_2032385_+	phage N-6-adenine-methyltransferase	Q9EYC2	Enterobacteria_phage	1.6e-100	100.0
WP_001254256.1\|2032381_2032564_+	NinE family protein	A0A0N7C1X3	Escherichia_phage	5.7e-29	100.0
WP_000208500.1\|2032838_2033603_+	phage antirepressor Ant	A0A0P0ZB11	Stx2-converting_phage	1.4e-121	100.0
WP_001004016.1\|2033677_2034400_+	phage antirepressor KilAC domain-containing protein	A0A0P0ZCB2	Stx2-converting_phage	6.0e-130	100.0
WP_001108004.1\|2034399_2035005_+	recombination protein NinG	Q5TJL9	Enterobacteria_phage	3.3e-97	100.0
WP_001028858.1\|2035001_2035673_+	serine/threonine protein phosphatase	Q5TJL8	Enterobacteria_phage	2.4e-133	100.0
WP_000512807.1\|2035663_2036152_+	late gene antiterminator protein	Q5TJL7	Enterobacteria_phage	7.0e-90	100.0
WP_000649751.1\|2036801_2037761_+	Shiga toxin Stx2c subunit A	Q5TJL6	Enterobacteria_phage	4.3e-176	100.0
WP_000738080.1\|2037772_2038042_+	Shiga toxin Stx2c subunit B	Q5TJL5	Enterobacteria_phage	2.1e-43	100.0
WP_001303568.1\|2038338_2038662_-	anti-adapter protein IraM	Q8HAJ1	Enterobacteria_phage	6.9e-62	100.0
WP_000143112.1\|2038905_2040843_+	SASA family carbohydrate esterase	A0A0P0ZBP4	Stx2-converting_phage	0.0e+00	99.8
WP_000143458.1\|2040979_2041159_+	DUF1378 family protein	A0A2R2Z345	Escherichia_phage	2.2e-25	100.0
WP_001290231.1\|2041199_2041472_+	DUF826 domain-containing protein	A0A0P0ZBB8	Stx2-converting_phage	2.2e-21	100.0
WP_000284515.1\|2041548_2041764_+\|holin	class II holin family protein	A0A0P0ZC45	Stx2-converting_phage	2.0e-33	100.0
WP_000075132.1\|2041763_2042261_+	lysozyme RrrD	A0A0N7KZA0	Stx2-converting_phage	2.6e-92	100.0
WP_000092318.1\|2042257_2042695_+\|lysis	lysis protein	A0A0P0ZBQ9	Stx2-converting_phage	2.0e-72	100.0
WP_000839224.1\|2042897_2043395_+	KilA-N domain-containing protein	A0A0P0ZBU2	Stx2-converting_phage	3.6e-94	100.0
WP_001283921.1\|2043391_2043649_+	hypothetical protein	A0A0P0ZBT1	Stx2-converting_phage	5.0e-39	100.0
WP_000095749.1\|2044111_2044339_-	DUF3950 domain-containing protein	A0A0P0ZCA1	Stx2-converting_phage	3.9e-35	100.0
WP_001303046.1\|2044380_2044746_+	HNH endonuclease	A0A0P0ZCH0	Stx2-converting_phage	2.0e-65	100.0
WP_000958396.1\|2045036_2045600_+\|terminase	terminase small subunit	A0A0P0ZCQ9	Stx2-converting_phage	2.8e-90	100.0
WP_162829202.1\|2046268_2047482_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	7.6e-170	100.0
WP_000173024.1\|2048634_2050572_+\|capsid	phage major capsid protein	A0A0P0ZAJ3	Stx2-converting_phage	0.0e+00	99.7
WP_001063023.1\|2050616_2050838_+	hypothetical protein	A0A0P0ZD92	Stx2-converting_phage	3.8e-35	98.6
WP_000125990.1\|2053364_2053691_+\|head,tail	phage gp6-like head-tail connector protein	A0A0P0ZBH1	Stx2-converting_phage	9.2e-54	100.0
WP_001007905.1\|2053700_2054051_+\|head	phage head closure protein	A0A0P0ZB28	Stx2-converting_phage	1.6e-59	100.0
WP_000573374.1\|2054047_2054494_+	HK97 gp10 family phage protein	A0A0P0ZCD2	Stx2-converting_phage	8.1e-77	100.0
WP_000133388.1\|2054490_2054835_+	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	1.4e-57	100.0
WP_001275508.1\|2054893_2055610_+\|tail	tail protein	A0A0P0ZD29	Stx2-converting_phage	2.9e-129	100.0
WP_001030063.1\|2055615_2055990_+\|tail	phage tail assembly chaperone	A0A0N7KZA2	Stx2-converting_phage	7.8e-65	100.0
WP_001453698.1\|2056085_2056295_+	DUF4035 domain-containing protein	A0A0P0ZDE6	Stx2-converting_phage	2.0e-33	100.0
WP_015994262.1\|2056346_2059589_+\|tail	phage tail tape measure protein	A0A0P0ZCJ4	Stx2-converting_phage	0.0e+00	100.0
WP_000807954.1\|2059581_2059923_+\|tail	phage tail protein	A0A0P0ZBQ8	Stx2-converting_phage	5.1e-63	100.0
WP_001179515.1\|2059922_2060621_+\|tail	phage minor tail protein L	A0A0P0ZD77	Stx2-converting_phage	6.6e-134	100.0
WP_001302649.1\|2060637_2060958_-	Arc family DNA-binding protein	A0A0P0ZBD1	Stx2-converting_phage	3.0e-49	100.0
WP_001154345.1\|2061065_2061239_+	Arc family DNA-binding protein	A0A0P0ZC65	Stx2-converting_phage	3.4e-23	100.0
WP_001416667.1\|2061309_2062233_+	phage antirepressor Ant	A0A0P0ZBT0	Stx2-converting_phage	7.6e-178	100.0
WP_024748453.1\|2062286_2063024_+\|tail	phage tail protein	A0A0P0ZDJ9	Stx2-converting_phage	5.0e-148	98.4
WP_129137391.1\|2062969_2063602_+\|tail	tail assembly protein	Q6H9T3	Enterobacteria_phage	3.5e-102	95.7
WP_000515107.1\|2063862_2067342_+	host specificity protein J	A0A0P0ZBW1	Stx2-converting_phage	0.0e+00	100.0
WP_001230314.1\|2067408_2068008_+	Ail/Lom family outer membrane beta-barrel protein	A0A0P0ZBV0	Stx2-converting_phage	1.8e-111	100.0
WP_000268993.1\|2068072_2069386_+\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0P0ZCC1	Stx2-converting_phage	2.8e-85	100.0
WP_001023452.1\|2069387_2069657_+\|tail	phage tail fiber C-terminal domain-containing protein	Q687E5	Enterobacteria_phage	6.4e-45	100.0
WP_000491542.1\|2069797_2070673_+	hypothetical protein	A0A0P0ZCT1	Stx2-converting_phage	1.5e-162	100.0
WP_001121226.1\|2070897_2071548_-	DUF1076 domain-containing protein	B6ETE1	Enterobacteria_phage	4.1e-122	99.5
WP_001303036.1\|2072871_2074038_+	serine-type D-Ala-D-Ala carboxypeptidase DacD	B6DZZ7	Stx2-converting_phage	4.5e-228	99.7
2016609:2072627	attR	NA	NA	NA	NA
WP_001105393.1\|2074156_2074630_+	DNA gyrase inhibitor SbmC	NA	NA	NA	NA
WP_001202488.1\|2074828_2075887_+	FUSC family protein	NA	NA	NA	NA
WP_000450409.1\|2076058_2076388_+	DUF496 family protein	NA	NA	NA	NA
WP_001016346.1\|2076488_2076671_-	hypothetical protein	NA	NA	NA	NA
WP_001304123.1\|2077159_2077273_-	DUF957 domain-containing protein	NA	NA	NA	NA
WP_000988600.1\|2077285_2077480_-	hypothetical protein	NA	NA	NA	NA
WP_001285587.1\|2077938_2078307_-	type IV toxin-antitoxin system toxin CbtA	NA	NA	NA	NA
WP_000692323.1\|2078380_2078602_-	DUF987 domain-containing protein	A0A142F0X9	Klebsiella_phage	1.4e-10	45.8
WP_001186192.1\|2078664_2079141_-	RadC family protein	NA	NA	NA	NA
WP_000860079.1\|2079155_2079635_-	antirestriction protein	A0A2D0W9W4	Bordetella_phage	6.8e-13	33.8
WP_001234544.1\|2079716_2080538_-	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	3.6e-46	38.5
WP_000846711.1\|2080758_2081169_-	hypothetical protein	NA	NA	NA	NA
WP_000775497.1\|2081184_2081868_-	hypothetical protein	NA	NA	NA	NA
WP_000102660.1\|2082003_2083074_-	patatin-like phospholipase family protein	NA	NA	NA	NA
WP_000203545.1\|2083070_2083976_-	chemotaxis protein	NA	NA	NA	NA
WP_000638172.1\|2083972_2084854_-	hypothetical protein	NA	NA	NA	NA
WP_162829204.1\|2084837_2086051_-\|transposase	IS3 family transposase	Q6H9S6	Enterobacteria_phage	8.2e-164	97.6
WP_001509211.1\|2086422_2088570_-	TonB-dependent receptor	NA	NA	NA	NA
WP_000998048.1\|2090017_2091556_-\|transposase	IS66-like element ISEc8 family transposase	A0A0P0ZBS5	Stx2-converting_phage	1.5e-300	100.0

DBSCAN-SWA_5

2115916 : 2151190

Escherichia_phage(38.89%)

transposase,terminase,portal,tail,holin,head,integrase,capsid

attL 2096212:2096226|attR 2120053:2120067

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2096212:2096226	attL	NA	NA	NA	NA
WP_001509205.1\|2115916_2116951_-\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	7.8e-99	57.1
WP_000094838.1\|2116950_2117154_-	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_000034457.1\|2117212_2119684_-	exonuclease	A0A192Y6E0	Salmonella_phage	8.8e-56	56.6
WP_000199485.1\|2119779_2119968_-	DUF1482 family protein	NA	NA	NA	NA
WP_000449168.1\|2119964_2120153_-	cell division inhibitor	NA	NA	NA	NA
2120053:2120067	attR	NA	NA	NA	NA
WP_000367376.1\|2120633_2120786_-	DUF1391 family protein	M4QQ57	Salicola_phage	8.7e-07	53.2
WP_000444607.1\|2121060_2121705_-	LexA family transcriptional regulator	A0A1P8DTH0	Proteus_phage	2.8e-06	24.9
WP_001261752.1\|2121802_2122030_+	cell division protein	NA	NA	NA	NA
WP_000693816.1\|2122026_2122452_+	Rha family transcriptional regulator	NA	NA	NA	NA
WP_024748451.1\|2122520_2123558_+	phage replisome organiser	A0A0U2RT81	Escherichia_phage	1.1e-87	68.3
WP_072143023.1\|2123469_2124012_+	replication protein	A0A0U2JGJ0	Escherichia_phage	6.4e-84	96.7
WP_000450610.1\|2124046_2124745_+	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	1.6e-71	59.5
WP_000702797.1\|2124766_2124991_+	hypothetical protein	A0A1B5FPG2	Escherichia_phage	3.6e-09	42.3
WP_001290006.1\|2124987_2125344_+	hypothetical protein	A0A222YY85	Escherichia_phage	3.1e-15	65.8
WP_001414276.1\|2125376_2125529_+	hypothetical protein	NA	NA	NA	NA
WP_000111243.1\|2125525_2125837_+	hypothetical protein	A0A222YY67	Escherichia_phage	2.4e-51	83.5
WP_000137954.1\|2125963_2126527_+	hypothetical protein	H6WZG0	Escherichia_phage	4.5e-48	94.9
WP_001278460.1\|2126636_2126741_+	hypothetical protein	NA	NA	NA	NA
WP_000902687.1\|2126927_2127140_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	7.6e-25	90.0
WP_001310296.1\|2127307_2127586_+	hypothetical protein	I6PCV7	Cronobacter_phage	1.3e-11	48.4
WP_001265075.1\|2127587_2128637_+	DUF968 domain-containing protein	U5P0K4	Shigella_phage	1.3e-109	54.9
WP_000904141.1\|2128649_2129009_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	1.5e-36	64.9
WP_000023257.1\|2131233_2133084_+	SASA family carbohydrate esterase	B6DZ89	Enterobacteria_phage	0.0e+00	96.4
WP_162829202.1\|2133165_2134379_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	7.6e-170	100.0
WP_024165672.1\|2134689_2134905_+\|holin	class II holin family protein	Q6H9V8	Enterobacteria_phage	7.7e-33	98.6
WP_000731204.1\|2134909_2135254_+	YdfR family protein	B6DZ91	Enterobacteria_phage	1.7e-58	99.1
WP_000992126.1\|2135304_2135838_+	lysozyme	A0A0N7KZF9	Stx2-converting_phage	1.4e-99	97.7
WP_001303555.1\|2135993_2136176_+	hypothetical protein	NA	NA	NA	NA
WP_001280929.1\|2136188_2136320_+	hypothetical protein	A0A0N7BYT9	Escherichia_phage	9.4e-10	88.4
WP_001208679.1\|2136547_2136733_+	hypothetical protein	A0A1U9AJA4	Stx1_converting_phage	7.5e-21	82.0
WP_001302690.1\|2137259_2137574_+	PerC family transcriptional regulator	NA	NA	NA	NA
WP_001299328.1\|2137655_2137880_-	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	4.1e-21	92.7
WP_000235436.1\|2138274_2138784_+\|terminase	terminase small subunit	A0A1I9KFT4	Aeromonas_phage	1.6e-12	32.7
WP_000259002.1\|2140668_2140875_+\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	7.9e-11	56.9
WP_000831796.1\|2140871_2142464_+\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	8.7e-182	60.5
WP_001254002.1\|2142453_2143959_+	S49 family peptidase	A0A2I6TC87	Escherichia_phage	1.2e-100	54.2
WP_000256723.1\|2143995_2144343_+\|head	head decoration protein	C6ZCY1	Enterobacteria_phage	2.6e-22	58.1
WP_001301534.1\|2144400_2144667_+\|capsid	major capsid protein	NA	NA	NA	NA
WP_029208397.1\|2144648_2145389_+\|tail	phage tail protein	Q687F6	Enterobacteria_phage	3.6e-130	98.0
WP_000479117.1\|2145402_2145834_+\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.4e-41	68.1
WP_000533402.1\|2145860_2146274_+\|tail	phage tail assembly protein T	S5MDP5	Escherichia_phage	1.6e-42	82.2
WP_128484525.1\|2146254_2148834_+\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	79.7
WP_000847298.1\|2148830_2149160_+\|tail	phage tail protein	Q687F2	Enterobacteria_phage	4.3e-59	100.0
WP_024748502.1\|2149159_2149858_+\|tail	phage minor tail protein L	A0A0P0ZBE3	Stx2-converting_phage	7.6e-130	98.3
WP_024748514.1\|2149868_2150612_+\|tail	phage tail protein	Q6H9T4	Enterobacteria_phage	6.1e-146	96.4
WP_050546863.1\|2150557_2151190_+\|tail	tail assembly protein	A0A0P0ZC16	Stx2-converting_phage	5.8e-105	99.5

DBSCAN-SWA_6

2214598 : 2234584

Enterobacteria_phage(75.0%)

transposase,integrase,tail

attL 2227720:2227733|attR 2237726:2237739

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032161583.1\|2214598_2215735_+\|transposase	IS30-like element IS30 family transposase	W5R8L2	Staphylococcus_phage	2.0e-42	35.6
WP_000132765.1\|2215685_2216009_-	phage late control D family protein	A0A0A7NQ97	Enterobacteria_phage	2.1e-42	97.8
WP_000005444.1\|2216166_2217351_+\|tail	phage tail sheath family protein	A0A0A7NV69	Enterobacteria_phage	1.7e-219	96.7
WP_174844915.1\|2217350_2217863_+\|tail	phage major tail tube protein	A0A0A7NPV8	Enterobacteria_phage	7.8e-92	98.8
WP_000665314.1\|2217917_2218283_+\|tail	tail protein	A0A0A7NPZ0	Enterobacteria_phage	1.7e-56	98.3
WP_000333495.1\|2218291_2218447_+\|tail	GpE family phage tail protein	A0A0A7NQ96	Enterobacteria_phage	8.8e-23	100.0
WP_000979955.1\|2221249_2221738_+\|tail	phage tail protein	A0A0A7NV65	Enterobacteria_phage	1.0e-85	100.0
WP_000954203.1\|2221894_2222467_+	serine acetyltransferase	A0A1L2JYI5	Streptococcus_phage	1.0e-07	34.4
WP_001310336.1\|2222510_2223041_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	3.5e-87	88.0
WP_000211280.1\|2224132_2224447_-	plasmid partitioning/stability family protein	A0A0A7NPT5	Enterobacteria_phage	1.1e-19	52.9
WP_000686523.1\|2224451_2225411_-	plasmid segregation protein ParM	A0A0A7NPX4	Enterobacteria_phage	1.2e-178	99.1
WP_000123463.1\|2225487_2228310_-	replication endonuclease	A0A0A7NQ77	Enterobacteria_phage	0.0e+00	97.7
2227720:2227733	attL	NA	NA	NA	NA
WP_000599379.1\|2228316_2228682_-	hypothetical protein	A0A0A7NRY1	Enterobacteria_phage	6.6e-61	96.7
WP_001310314.1\|2228678_2229296_-	ash family protein	S5MQL6	Escherichia_phage	2.1e-06	46.2
WP_000104305.1\|2229307_2229607_-	hypothetical protein	A0A0A7NRX6	Enterobacteria_phage	1.6e-41	89.9
WP_000153707.1\|2229603_2229870_-	winged helix-turn-helix transcriptional regulator	A0A0A7NV47	Enterobacteria_phage	3.1e-31	77.3
WP_000985157.1\|2229866_2230070_-	hypothetical protein	A0A0A7NPS8	Enterobacteria_phage	2.5e-25	83.6
WP_000991913.1\|2230093_2230510_-	hypothetical protein	NA	NA	NA	NA
WP_000021655.1\|2230602_2230716_-	hypothetical protein	A0A0A7NPW7	Enterobacteria_phage	6.2e-10	100.0
WP_000514287.1\|2230712_2230955_-	DUF4754 family protein	A0A0A7NQ71	Enterobacteria_phage	1.2e-37	98.8
WP_000159449.1\|2230966_2231245_-	hypothetical protein	A0A0A7NRX5	Enterobacteria_phage	4.8e-35	80.4
WP_000739029.1\|2231255_2231606_-	DUF4761 family protein	A0A0A7NV42	Enterobacteria_phage	8.6e-50	81.9
WP_000014504.1\|2231627_2231831_-	DNA-binding protein	P79674	Haemophilus_phage	3.1e-07	45.2
WP_001673482.1\|2231902_2232040_+	hypothetical protein	NA	NA	NA	NA
WP_000786773.1\|2232129_2232534_+	transcriptional regulator	Q6QID2	Burkholderia_phage	2.7e-23	53.8
WP_000290345.1\|2232549_2233200_+	hypothetical protein	NA	NA	NA	NA
WP_000865208.1\|2233229_2233577_+	DUF2511 domain-containing protein	NA	NA	NA	NA
WP_001303019.1\|2233582_2234584_+\|integrase	tyrosine-type recombinase/integrase	Q94N03	Haemophilus_virus	3.5e-104	59.1
2237726:2237739	attR	NA	NA	NA	NA

DBSCAN-SWA_7

2555130 : 2640206

Stx2-converting_phage(35.85%)

protease,transposase,terminase,portal,tail,holin,head,capsid

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001260835.1\|2555130_2555952_-\|protease	serine protease	NA	NA	NA	NA
WP_000233090.1\|2556051_2556135_-	hypothetical protein	NA	NA	NA	NA
WP_000743952.1\|2556227_2556563_-	acid shock protein	NA	NA	NA	NA
WP_000091829.1\|2556959_2558213_-	MFS transporter	NA	NA	NA	NA
WP_001019530.1\|2558319_2559213_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000225276.1\|2559347_2560568_+	DNA-binding transcriptional repressor Mlc	NA	NA	NA	NA
WP_000919231.1\|2560692_2561388_+	ATP-dependent dethiobiotin synthetase BioD	NA	NA	NA	NA
WP_071525082.1\|2561340_2562633_-	voltage-gated ClC-type chloride channel ClcB	NA	NA	NA	NA
WP_000148710.1\|2562790_2563405_-	Tat proofreading chaperone DmsD	A0A077SLS7	Escherichia_phage	8.7e-29	36.3
WP_000526515.1\|2563447_2564302_-	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA
WP_000213028.1\|2564303_2564921_-	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	9.5e-76	59.6
WP_001414236.1\|2564931_2567355_-	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	1.3e-208	48.6
WP_000041704.1\|2567415_2569842_-	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	1.1e-212	49.0
WP_000778147.1\|2570040_2570346_-	DUF1161 domain-containing protein	NA	NA	NA	NA
WP_001303515.1\|2570453_2571164_+	YnfC family lipoprotein	NA	NA	NA	NA
WP_001138581.1\|2571166_2571727_-	spermidine N1-acetyltransferase	NA	NA	NA	NA
WP_000705189.1\|2571761_2572103_-	DUF1283 family protein	NA	NA	NA	NA
WP_001302046.1\|2572237_2572564_+	YnfA family protein	A0A218MNG8	uncultured_virus	9.9e-24	55.6
WP_000005552.1\|2573552_2573804_-	excisionase family protein	S4TND0	Salmonella_phage	2.2e-15	50.0
WP_000048458.1\|2573876_2576348_-	exonuclease	K7PLW7	Enterobacteria_phage	3.2e-58	60.1
WP_001090200.1\|2576440_2576632_-	DUF1482 family protein	NA	NA	NA	NA
WP_000449192.1\|2576628_2576817_-	cell division inhibition protein DicB	NA	NA	NA	NA
WP_001331716.1\|2577217_2577382_+	hypothetical protein	NA	NA	NA	NA
WP_001171930.1\|2577385_2577604_-	hypothetical protein	NA	NA	NA	NA
WP_001240334.1\|2577675_2577975_-	hypothetical protein	NA	NA	NA	NA
WP_001303511.1\|2578327_2578606_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_001302048.1\|2578607_2578799_-	hypothetical protein	NA	NA	NA	NA
WP_001169686.1\|2578819_2579191_-	hypothetical protein	NA	NA	NA	NA
WP_000172738.1\|2579288_2579591_+	transcriptional regulator	K7PHA1	Enterobacteria_phage	8.6e-06	34.8
WP_000693943.1\|2579587_2580013_+	Rha family transcriptional regulator	NA	NA	NA	NA
WP_000095670.1\|2580035_2580998_+	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	1.8e-81	57.0
WP_000788936.1\|2581004_2581745_+	ATP-binding protein	A0A088CBP4	Shigella_phage	2.3e-124	89.8
WP_001118159.1\|2582555_2582951_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	7.8e-31	51.4
WP_000206793.1\|2583007_2583592_+	DUF551 domain-containing protein	A0A0P0ZD75	Stx2-converting_phage	1.9e-33	84.8
WP_001278450.1\|2583707_2583812_+	hypothetical protein	NA	NA	NA	NA
WP_000887477.1\|2584000_2584213_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	3.1e-18	68.6
WP_012779366.1\|2584380_2584659_+	hypothetical protein	I6PCV7	Cronobacter_phage	5.7e-12	48.4
WP_001265161.1\|2584660_2585710_+	DUF968 domain-containing protein	U5P0K4	Shigella_phage	1.4e-108	53.7
WP_001217455.1\|2585722_2586082_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	5.9e-38	67.5
WP_001059381.1\|2586078_2586768_+	antiterminator	I6PDF8	Cronobacter_phage	4.0e-59	51.1
WP_001303509.1\|2587404_2587833_+	tellurite resistance protein	H6WZJ6	Escherichia_phage	4.4e-64	97.8
WP_024748470.1\|2588311_2590162_+	SASA family carbohydrate esterase	B6DZ89	Enterobacteria_phage	0.0e+00	98.2
WP_024180155.1\|2590601_2590817_+\|holin	class II holin family protein	A0A0P0ZC45	Stx2-converting_phage	1.3e-32	97.2
WP_000731259.1\|2590821_2591166_+	YdfR family protein	B6DZ91	Enterobacteria_phage	4.5e-59	100.0
WP_000992137.1\|2591216_2591750_+	lysozyme	B6DZ92	Enterobacteria_phage	3.5e-103	100.0
WP_001056806.1\|2592020_2592590_+	hypothetical protein	A0A1I9LJR6	Stx_converting_phage	3.1e-105	100.0
WP_162829202.1\|2592675_2593888_+\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	7.6e-170	100.0
WP_012816791.1\|2594276_2594462_+	membrane protein	A0A0P0ZCT3	Stx2-converting_phage	1.2e-18	100.0
WP_000095736.1\|2594886_2595114_-	DUF3950 domain-containing protein	A0A0P0ZE23	Stx2-converting_phage	1.7e-35	100.0
WP_015994246.1\|2595155_2595521_+	HNH endonuclease	B6DZ96	Enterobacteria_phage	1.5e-65	100.0
WP_000958387.1\|2595810_2596374_+\|terminase	terminase small subunit	A0A0N7KZJ8	Stx2-converting_phage	8.1e-90	100.0
WP_001301491.1\|2596370_2598032_+\|terminase	terminase large subunit	A0A0P0ZD10	Stx2-converting_phage	0.0e+00	100.0
WP_000172999.1\|2598095_2600033_+\|capsid	phage major capsid protein	B6DZ99	Enterobacteria_phage	0.0e+00	100.0
WP_001063099.1\|2600077_2600299_+	hypothetical protein	B6DZA0	Enterobacteria_phage	5.8e-36	100.0
WP_000267292.1\|2600244_2602746_+\|portal	phage portal protein	B6DZA1	Enterobacteria_phage	0.0e+00	99.2
WP_000126019.1\|2602825_2603152_+\|head,tail	phage gp6-like head-tail connector protein	A0A0P0ZDA0	Stx2-converting_phage	9.2e-54	100.0
WP_001007901.1\|2603161_2603512_+\|head	phage head closure protein	A0A0P0ZCU6	Stx2-converting_phage	7.0e-60	100.0
WP_000573374.1\|2603508_2603955_+	HK97 gp10 family phage protein	A0A0P0ZCD2	Stx2-converting_phage	8.1e-77	100.0
WP_000133388.1\|2603951_2604296_+	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	1.4e-57	100.0
WP_001275508.1\|2604354_2605071_+\|tail	tail protein	A0A0P0ZD29	Stx2-converting_phage	2.9e-129	100.0
WP_001030063.1\|2605076_2605451_+\|tail	phage tail assembly chaperone	A0A0N7KZA2	Stx2-converting_phage	7.8e-65	100.0
WP_001453698.1\|2605546_2605756_+	DUF4035 domain-containing protein	A0A0P0ZDE6	Stx2-converting_phage	2.0e-33	100.0
WP_064261924.1\|2605808_2609051_+\|tail	phage tail tape measure protein	A0A0P0ZDY0	Stx2-converting_phage	0.0e+00	99.4
WP_000807954.1\|2609043_2609385_+\|tail	phage tail protein	A0A0P0ZBQ8	Stx2-converting_phage	5.1e-63	100.0
WP_001303038.1\|2609384_2610083_+\|tail	phage minor tail protein L	A0A0P0ZBE3	Stx2-converting_phage	1.5e-133	100.0
WP_046671488.1\|2610093_2610837_+\|tail	phage tail protein	A0A0P0ZE89	Stx2-converting_phage	7.7e-149	98.4
WP_171879942.1\|2610782_2611415_+\|tail	tail assembly protein	B6ETG3	Enterobacteria_phage	1.6e-102	98.1
WP_024748464.1\|2611661_2615141_+	host specificity protein J	B6DZB5	Enterobacteria_phage	0.0e+00	96.1
WP_001230495.1\|2615207_2615807_+	Ail/Lom family outer membrane beta-barrel protein	A0A0P0ZE39	Stx2-converting_phage	3.7e-109	98.0
WP_174844916.1\|2615871_2617185_+\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0P0ZD68	Stx2-converting_phage	1.1e-76	98.9
WP_032324700.1\|2617186_2617456_+\|tail	phage tail fiber C-terminal domain-containing protein	H6WZN0	Escherichia_phage	1.2e-43	97.8
WP_162829200.1\|2619104_2620318_-\|transposase	IS3 family transposase	Q6H9S6	Enterobacteria_phage	1.5e-170	100.0
WP_001079499.1\|2624855_2625362_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_001056491.1\|2625407_2625908_-	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_000807651.1\|2625993_2626173_-	general stress protein	NA	NA	NA	NA
WP_000443092.1\|2626553_2627360_-	tryptophan synthase subunit alpha	NA	NA	NA	NA
WP_000209521.1\|2627359_2628553_-	tryptophan synthase subunit beta	NA	NA	NA	NA
WP_000983855.1\|2628564_2629926_-	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	A0A0P0IR83	Acinetobacter_phage	7.3e-36	39.8
WP_000763503.1\|2629926_2631522_-	bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD	A0A0N7IRD9	Acinetobacter_phage	5.0e-52	38.2
WP_001194607.1\|2631521_2633084_-	anthranilate synthase component I	NA	NA	NA	NA
WP_001700591.1\|2633175_2633220_-	trp operon leader peptide	NA	NA	NA	NA
WP_001285675.1\|2633357_2634239_+	5'-3' exoribonuclease	NA	NA	NA	NA
WP_001295575.1\|2634235_2634856_+	threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
WP_001302160.1\|2634883_2636467_+	DUF2207 domain-containing protein	NA	NA	NA	NA
WP_001291216.1\|2636679_2637552_+	23S rRNA pseudouridine(2605) synthase RluB	NA	NA	NA	NA
WP_001278878.1\|2637591_2638182_-	cob(I)yrinic acid a,c-diamide adenosyltransferase	NA	NA	NA	NA
WP_000559268.1\|2638178_2638937_-	YciK family oxidoreductase	A0A0N9R355	Chrysochromulina_ericina_virus	6.7e-07	23.9
WP_000422055.1\|2639156_2640206_+\|protease	protease SohB	A0A2H4UUF9	Bodo_saltans_virus	1.3e-21	31.5

DBSCAN-SWA_8

2723834 : 2775183

Escherichia_phage(39.66%)

protease,tRNA,terminase,portal,tail,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000628061.1\|2723834_2725067_-	diguanylate cyclase DgcM	A0A127AWB9	Bacillus_phage	3.1e-17	39.5
WP_000387388.1\|2725321_2726305_+	zinc transporter ZntB	NA	NA	NA	NA
WP_001625136.1\|2726579_2726750_+	hypothetical protein	NA	NA	NA	NA
WP_000123746.1\|2726782_2728156_+	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	6.6e-53	33.1
WP_001157382.1\|2728284_2729220_-\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	5.4e-147	99.6
WP_000040845.1\|2729271_2730507_-	DUF3596 domain-containing protein	A0A0U2JGI6	Escherichia_phage	1.1e-237	98.3
WP_000079604.1\|2730508_2730724_-	excisionase XisR	A0A0U2RY08	Escherichia_phage	1.8e-37	100.0
WP_001356607.1\|2730823_2731012_-	DUF1187 family protein	A0A0U2QL97	Escherichia_phage	1.6e-18	97.9
WP_042853000.1\|2731004_2731199_-	type I toxin-antitoxin system endodeoxyribonuclease toxin RalR	A0A0U2QQP4	Escherichia_phage	7.6e-32	96.9
WP_000166315.1\|2731255_2732065_-	recombination protein RecT	A0A1P8DTF2	Proteus_phage	8.8e-106	71.5
WP_000102194.1\|2732057_2734727_-	exodeoxyribonuclease VIII	A0A0U2I1R6	Escherichia_phage	4.2e-205	61.3
WP_000245534.1\|2734807_2734984_-	hypothetical protein	A0A0U2SHB5	Escherichia_phage	4.1e-24	89.7
WP_000560226.1\|2734977_2735199_-	killing protein KilR	A0A0U2RTC4	Escherichia_phage	6.9e-37	97.3
WP_000887681.1\|2735245_2736094_-	Rha family phage regulatory protein	A0A0P0ZE80	Stx2-converting_phage	5.9e-60	60.8
WP_000379547.1\|2736505_2736658_-	DUF1391 family protein	M4QQ57	Salicola_phage	1.0e-07	55.3
WP_000410105.1\|2736964_2737384_-	helix-turn-helix domain-containing protein	K7PH71	Enterobacterial_phage	3.1e-14	60.6
WP_001033914.1\|2737480_2737723_+	helix-turn-helix transcriptional regulator	K7PKH4	Enterobacteria_phage	2.3e-17	62.1
WP_000702017.1\|2737719_2738142_+	hypothetical protein	A0A0U2RXZ9	Escherichia_phage	5.9e-69	93.6
WP_001356605.1\|2738219_2739008_+	hypothetical protein	G9L6A8	Escherichia_phage	5.1e-42	65.0
WP_000788984.1\|2739014_2739761_+	ATP-binding protein	V5UQI5	Shigella_phage	4.8e-114	80.9
WP_000450718.1\|2739783_2740545_+	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	1.0e-116	87.7
WP_001151116.1\|2740560_2740983_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	2.8e-63	90.6
WP_000014164.1\|2740979_2741210_+	hypothetical protein	A0A2R2Z315	Escherichia_phage	4.1e-16	76.8
WP_001138877.1\|2741364_2742015_+	hypothetical protein	NA	NA	NA	NA
WP_000418464.1\|2742001_2743123_+	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
WP_000902698.1\|2743245_2743458_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	1.2e-17	70.0
WP_000940305.1\|2744017_2744617_+	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	1.0e-106	92.5
WP_000228017.1\|2744616_2744907_+	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	8.2e-46	87.5
WP_000640110.1\|2744903_2745446_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	3.9e-73	72.3
WP_000142970.1\|2746146_2748093_+	DUF1737 domain-containing protein	A0A075M342	Escherichia_Stx1-converting_recombinant_phage	0.0e+00	98.5
WP_000143458.1\|2748229_2748409_+	DUF1378 family protein	A0A2R2Z345	Escherichia_phage	2.2e-25	100.0
WP_001290230.1\|2748449_2748695_+	DUF826 domain-containing protein	A0A0P0ZGR2	Escherichia_phage	8.8e-17	100.0
WP_001072899.1\|2748772_2748988_+\|holin	class II holin family protein	A0A0P0ZFW5	Escherichia_phage	9.0e-34	100.0
WP_000087728.1\|2748992_2749526_+	lysozyme	A0A1I9LJR4	Stx_converting_phage	1.8e-102	100.0
WP_001056806.1\|2749796_2750366_+	hypothetical protein	A0A1I9LJR6	Stx_converting_phage	3.1e-105	100.0
WP_000539794.1\|2750365_2750512_+	hypothetical protein	A0A0P0ZE99	Stx2-converting_phage	1.7e-15	95.8
WP_012816791.1\|2750739_2750925_+	membrane protein	A0A0P0ZCT3	Stx2-converting_phage	1.2e-18	100.0
WP_001302882.1\|2751136_2751409_-	hypothetical protein	NA	NA	NA	NA
WP_000348565.1\|2751441_2751918_+	DUF1441 family protein	Q9EYD0	Enterobacteria_phage	2.1e-83	100.0
WP_001077625.1\|2751914_2754038_+\|terminase	phage terminase large subunit family protein	Q9EYD1	Enterobacteria_phage	0.0e+00	100.0
WP_000102415.1\|2754034_2754247_+	hypothetical protein	S5MBY8	Escherichia_phage	3.0e-29	98.6
WP_000974564.1\|2754246_2755749_+\|portal	phage portal protein	Q9EYD2	Enterobacteria_phage	4.8e-291	100.0
WP_001114424.1\|2755693_2757718_+\|protease	Clp protease ClpP	S5M7Q8	Escherichia_phage	0.0e+00	99.8
WP_001097065.1\|2757805_2758132_+	DUF2190 family protein	Q9EYD5	Enterobacteria_phage	6.1e-50	100.0
WP_001281350.1\|2758124_2758406_+	DNA breaking-rejoining protein	Q8VNN4	Enterobacteria_phage	3.9e-45	97.8
WP_000974966.1\|2758408_2759032_+\|tail	phage tail protein	Q9EYD6	Enterobacteria_phage	6.6e-101	100.0
WP_000682716.1\|2759044_2759443_+\|tail	tail protein	Q9EYD7	Enterobacteria_phage	5.9e-71	100.0
WP_000235090.1\|2759450_2760203_+\|tail	phage tail protein	Q687F6	Enterobacteria_phage	5.8e-136	100.0
WP_000479043.1\|2760216_2760639_+\|tail	phage minor tail protein G	Q687F5	Enterobacteria_phage	5.1e-73	100.0
WP_000532073.1\|2760665_2760974_+\|tail	phage tail assembly protein T	Q687F4	Enterobacteria_phage	1.3e-54	100.0
WP_000918276.1\|2761017_2763663_+\|tail	phage tail tape measure protein	Q687F3	Enterobacteria_phage	0.0e+00	99.4
WP_000847298.1\|2763659_2763989_+\|tail	phage tail protein	Q687F2	Enterobacteria_phage	4.3e-59	100.0
WP_001356552.1\|2763988_2764687_+\|tail	phage minor tail protein L	A0A0P0ZBE3	Stx2-converting_phage	3.6e-132	99.1
WP_000194798.1\|2764697_2765441_+\|tail	phage tail protein	Q9EYE4	Enterobacteria_phage	3.7e-151	100.0
WP_096851774.1\|2765386_2766016_+\|tail	tail assembly protein	Q9EYE5	Enterobacteria_phage	2.3e-101	91.9
WP_000514990.1\|2766256_2769730_+	host specificity protein J	A0A0P0ZBW1	Stx2-converting_phage	0.0e+00	89.9
WP_174844917.1\|2769797_2770397_+	Ail/Lom family outer membrane beta-barrel protein	Q9EV15	Enterobacteria_phage	2.8e-109	99.5
WP_000279065.1\|2770461_2771784_+\|tail	prophage tail fiber N-terminal domain-containing protein	Q687E6	Enterobacteria_phage	2.0e-75	98.6
WP_001023406.1\|2771785_2772055_+\|tail	phage tail fiber C-terminal domain-containing protein	Q6H9S8	Enterobacteria_phage	2.4e-44	97.8
WP_001131659.1\|2772167_2772743_+	DUF1076 domain-containing protein	H6WZN1	Escherichia_phage	5.3e-89	88.4
WP_001443810.1\|2772815_2773445_+	DUF1076 domain-containing protein	B6DZB9	Enterobacteria_phage	1.3e-77	92.2
WP_001143784.1\|2773526_2774168_+	DUF1076 domain-containing protein	B6DZC0	Enterobacteria_phage	6.8e-109	100.0
WP_001295593.1\|2774748_2775183_-	universal stress protein UspF	A0A1W6JNV4	Morganella_phage	1.4e-28	52.8

DBSCAN-SWA_9

2958187 : 3017706

Escherichia_phage(34.38%)

terminase,transposase,portal,tail,holin,head,integrase,capsid

attL 2964992:2965009|attR 3023689:3023706

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000214712.1\|2958187_2958391_+	putative selenium delivery protein YdfZ	J9Q802	Salmonella_phage	1.6e-11	55.2
WP_000527769.1\|2958426_2959887_-	mannitol dehydrogenase family protein	H8ZJP8	Ostreococcus_tauri_virus	1.9e-42	29.6
WP_001120551.1\|2961390_2961633_+	DinI-like family protein	Q687E4	Enterobacteria_phage	2.4e-27	83.3
WP_001143804.1\|2961794_2962436_-	DUF1076 domain-containing protein	B6DZC0	Enterobacteria_phage	3.8e-104	96.7
WP_001356599.1\|2962517_2963147_-	DUF1076 domain-containing protein	B6DZB9	Enterobacteria_phage	6.1e-78	91.5
WP_001131658.1\|2963219_2963795_-	DUF1076 domain-containing protein	H6WZN1	Escherichia_phage	4.1e-89	88.9
WP_001023407.1\|2963908_2964178_-\|tail	phage tail fiber C-terminal domain-containing protein	H6WZN0	Escherichia_phage	1.4e-44	98.9
WP_024748460.1\|2964179_2965493_-\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0P0ZE15	Stx2-converting_phage	6.9e-76	96.6
2964992:2965009	attL	NA	NA	NA	NA
WP_174844918.1\|2965557_2966163_-	Ail/Lom family outer membrane beta-barrel protein	A0A0P0ZE39	Stx2-converting_phage	2.9e-109	99.0
WP_137049467.1\|2966230_2969710_-	host specificity protein J	B6DZB5	Enterobacteria_phage	0.0e+00	99.6
WP_129137391.1\|2969956_2970589_-\|tail	tail assembly protein	Q6H9T3	Enterobacteria_phage	3.5e-102	95.7
WP_174844919.1\|2970534_2971278_-\|tail	phage tail protein	Q9EYE4	Enterobacteria_phage	2.6e-144	96.3
WP_001302968.1\|2971288_2971987_-\|tail	phage minor tail protein L	A0A0P0ZBE3	Stx2-converting_phage	2.9e-129	97.8
WP_000847298.1\|2971986_2972316_-\|tail	phage tail protein	Q687F2	Enterobacteria_phage	4.3e-59	100.0
WP_000081804.1\|2972312_2974925_-\|tail	phage tail tape measure protein	Q687F3	Enterobacteria_phage	0.0e+00	95.9
WP_000533440.1\|2974905_2975319_-\|tail	phage tail assembly protein T	Q687F4	Enterobacteria_phage	3.2e-43	83.2
WP_000479046.1\|2975345_2975768_-\|tail	phage minor tail protein G	Q687F5	Enterobacteria_phage	2.4e-70	97.9
WP_000235090.1\|2975781_2976534_-\|tail	phage tail protein	Q687F6	Enterobacteria_phage	5.8e-136	100.0
WP_000683063.1\|2976541_2976937_-\|tail	tail protein	A0A2R9YJI2	Escherichia_phage	3.3e-58	81.7
WP_000975020.1\|2976933_2977467_-\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	5.9e-58	66.7
WP_000753016.1\|2977481_2977835_-\|head,tail	head-tail joining protein	A0A2R9YJJ5	Escherichia_phage	1.9e-57	92.3
WP_000158906.1\|2977846_2978245_-	DNA-packaging protein FI	A0A0K2FIR1	Enterobacteria_phage	3.5e-63	98.5
WP_024748468.1\|2978286_2979312_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	9.6e-190	98.5
WP_001295978.1\|2979367_2979700_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	3.8e-55	99.1
WP_000123254.1\|2979709_2981029_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	3.4e-232	98.2
WP_001301524.1\|2981009_2982611_-\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	1.4e-307	98.7
WP_000198153.1\|2982607_2982814_-	gpW family protein	A0A2R9YJL2	Escherichia_phage	2.2e-29	98.5
WP_024748469.1\|2982810_2984736_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	98.0
WP_000867498.1\|2984710_2985256_-\|terminase	terminase small subunit	A0A0K2FIG2	Enterobacteria_phage	9.6e-80	83.3
WP_001303940.1\|2985642_2985867_+	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	1.7e-19	90.6
WP_001302717.1\|2985948_2986263_-	PerC family transcriptional regulator	NA	NA	NA	NA
WP_001208680.1\|2986788_2986974_-	membrane protein	A0A1U9AJA4	Stx1_converting_phage	1.7e-20	80.3
WP_000539795.1\|2987196_2987343_-	hypothetical protein	A0A0P0ZG36	Escherichia_phage	1.1e-11	87.0
WP_001056806.1\|2987342_2987912_-	hypothetical protein	A0A1I9LJR6	Stx_converting_phage	3.1e-105	100.0
WP_000992137.1\|2988182_2988716_-	lysozyme	B6DZ92	Enterobacteria_phage	3.5e-103	100.0
WP_000731259.1\|2988766_2989111_-	YdfR family protein	B6DZ91	Enterobacteria_phage	4.5e-59	100.0
WP_024180155.1\|2989115_2989331_-\|holin	class II holin family protein	A0A0P0ZC45	Stx2-converting_phage	1.3e-32	97.2
WP_000023185.1\|2989770_2991621_-	SASA family carbohydrate esterase	B6DZ89	Enterobacteria_phage	0.0e+00	98.7
WP_001302123.1\|2992098_2992530_-	tellurite resistance protein	H6WZJ6	Escherichia_phage	1.6e-66	96.5
WP_000301797.1\|2992980_2993694_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000917763.1\|2993829_2994027_-	hypothetical protein	S5MQK8	Escherichia_phage	8.9e-28	96.9
WP_000640035.1\|2994251_2994806_-	DUF1133 family protein	A0A0U2S606	Escherichia_phage	1.0e-65	67.4
WP_001217444.1\|2994868_2995174_-	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	7.1e-32	66.3
WP_001265229.1\|2995186_2996236_-	DUF968 domain-containing protein	U5P0K4	Shigella_phage	1.2e-110	54.6
WP_000191872.1\|2996237_2996510_-	hypothetical protein	S4TNP0	Salmonella_phage	1.1e-12	53.0
WP_000756596.1\|2996631_2996976_-	YgiW/YdeI family stress tolerance OB fold protein	A0A1I9LJU6	Stx_converting_phage	6.1e-56	99.1
WP_000935259.1\|2997095_2997308_-	type I toxin-antitoxin system Hok family toxin	A0A0P0ZAX5	Stx2-converting_phage	6.0e-30	100.0
WP_000104474.1\|2997541_2998099_-	DUF551 domain-containing protein	A0A0N7KZV3	Escherichia_phage	2.8e-34	41.7
WP_000683609.1\|2998100_2998319_-	DUF4014 family protein	A0A2R2Z311	Escherichia_phage	2.3e-21	72.2
WP_001289673.1\|2998446_2998758_-	hypothetical protein	A0A0U2QV73	Escherichia_phage	7.2e-56	92.2
WP_000699809.1\|2998750_2998978_-	hypothetical protein	A0A1B5FPG2	Escherichia_phage	5.1e-11	49.3
WP_000603384.1\|2998974_2999256_-	DNA-binding protein	A0A222YXX1	Escherichia_phage	1.0e-29	73.6
WP_000450627.1\|2999288_3000005_-	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	3.3e-72	62.8
WP_000139447.1\|3000038_3000500_-	replication protein	A0A0U2JGJ0	Escherichia_phage	4.0e-79	90.2
WP_001262402.1\|3000492_3001536_-	hypothetical protein	A0A0U2RT81	Escherichia_phage	1.4e-82	65.1
WP_000693878.1\|3001604_3002030_-	Rha family transcriptional regulator	NA	NA	NA	NA
WP_000747948.1\|3002013_3002256_-	hypothetical protein	H9C161	Pectobacterium_phage	4.8e-07	55.8
WP_001416688.1\|3002647_3002986_+	peptidase S24	H9C160	Pectobacterium_phage	1.9e-06	30.1
WP_000380316.1\|3003278_3003431_+	DUF1391 family protein	M4QQ57	Salicola_phage	5.1e-07	53.2
WP_000394548.1\|3003442_3004081_+	hypothetical protein	A0A2R2Z306	Escherichia_phage	2.5e-07	41.9
WP_001133037.1\|3004081_3004291_-	hypothetical protein	NA	NA	NA	NA
WP_000450222.1\|3004855_3005044_+	cell division inhibitor	NA	NA	NA	NA
WP_000092782.1\|3005040_3005229_+	DUF1482 family protein	NA	NA	NA	NA
WP_000102181.1\|3005321_3007766_+	exonuclease	V5UQJ3	Shigella_phage	2.2e-176	58.5
WP_000113189.1\|3007830_3008079_+	excisionase	NA	NA	NA	NA
WP_001500821.1\|3008056_3009187_+\|integrase	phage integrase Arm DNA-binding domain-containing protein	O21940	Phage_21	4.9e-102	50.9
WP_001345079.1\|3010486_3011137_-	DUF1076 domain-containing protein	B6ETE1	Enterobacteria_phage	6.6e-27	32.4
WP_001144877.1\|3012643_3013234_-	T3SS effector guanine nucleotide exchange factor EspM1	NA	NA	NA	NA
WP_001303944.1\|3013417_3014065_+	T3SS effector E3 ubiquitin-protein ligase NleG	B6ETE1	Enterobacteria_phage	1.6e-41	41.1
WP_001414184.1\|3014201_3014348_-	hypothetical protein	NA	NA	NA	NA
WP_001303943.1\|3014775_3015054_+	hypothetical protein	NA	NA	NA	NA
WP_001171554.1\|3015393_3015774_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	1.4e-66	100.0
WP_000612591.1\|3015770_3016118_+	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.2e-61	100.0
WP_174844920.1\|3016167_3017706_+\|transposase	IS66-like element ISEc8 family transposase	A0A0P0ZBS5	Stx2-converting_phage	5.8e-300	99.8
3023689:3023706	attR	NA	NA	NA	NA

DBSCAN-SWA_10

3022728 : 3067505

Stx2-converting_phage(40.91%)

terminase,portal,tail,holin,head,integrase,capsid

attL 3022450:3022464|attR 3068717:3068731

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3022450:3022464	attL	NA	NA	NA	NA
WP_001023474.1\|3022728_3022998_-\|tail	phage tail fiber C-terminal domain-containing protein	A0A1U9AJC2	Stx1_converting_phage	3.2e-44	98.9
WP_000268847.1\|3022999_3024313_-\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0P0ZE15	Stx2-converting_phage	2.0e-83	99.1
WP_001230508.1\|3024377_3024977_-	Ail/Lom family outer membrane beta-barrel protein	A0A0P0ZE39	Stx2-converting_phage	1.2e-110	100.0
WP_140415299.1\|3027346_3028522_-	host specificity protein J	Q9EYE6	Enterobacteria_phage	6.4e-230	97.4
WP_171879942.1\|3028767_3029400_-\|tail	tail assembly protein	B6ETG3	Enterobacteria_phage	1.6e-102	98.1
WP_046671488.1\|3029345_3030089_-\|tail	phage tail protein	A0A0P0ZE89	Stx2-converting_phage	7.7e-149	98.4
WP_001303038.1\|3030099_3030798_-\|tail	phage minor tail protein L	A0A0P0ZBE3	Stx2-converting_phage	1.5e-133	100.0
WP_000807954.1\|3030797_3031139_-\|tail	phage tail protein	A0A0P0ZBQ8	Stx2-converting_phage	5.1e-63	100.0
WP_064261924.1\|3031131_3034374_-\|tail	phage tail tape measure protein	A0A0P0ZDY0	Stx2-converting_phage	0.0e+00	99.4
WP_001453698.1\|3034426_3034636_-	DUF4035 domain-containing protein	A0A0P0ZDE6	Stx2-converting_phage	2.0e-33	100.0
WP_001030063.1\|3034731_3035106_-\|tail	phage tail assembly chaperone	A0A0N7KZA2	Stx2-converting_phage	7.8e-65	100.0
WP_001275471.1\|3035111_3035828_-\|tail	tail protein	A0A0P0ZD29	Stx2-converting_phage	3.9e-129	99.6
WP_000133388.1\|3035886_3036231_-	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	1.4e-57	100.0
WP_000573374.1\|3036227_3036674_-	HK97 gp10 family phage protein	A0A0P0ZCD2	Stx2-converting_phage	8.1e-77	100.0
WP_001007901.1\|3036670_3037021_-\|head	phage head closure protein	A0A0P0ZCU6	Stx2-converting_phage	7.0e-60	100.0
WP_000126019.1\|3037030_3037357_-\|head,tail	phage gp6-like head-tail connector protein	A0A0P0ZDA0	Stx2-converting_phage	9.2e-54	100.0
WP_000267292.1\|3037436_3039938_-\|portal	phage portal protein	B6DZA1	Enterobacteria_phage	0.0e+00	99.2
WP_001063099.1\|3039883_3040105_-	hypothetical protein	B6DZA0	Enterobacteria_phage	5.8e-36	100.0
WP_000172999.1\|3040149_3042087_-\|capsid	phage major capsid protein	B6DZ99	Enterobacteria_phage	0.0e+00	100.0
WP_024748457.1\|3042150_3043812_-\|terminase	terminase large subunit	A0A0P0ZD10	Stx2-converting_phage	0.0e+00	99.5
WP_001303051.1\|3043808_3044372_-\|terminase	terminase small subunit	B6DZ97	Enterobacteria_phage	2.8e-90	99.5
WP_015994246.1\|3044661_3045027_-	HNH endonuclease	B6DZ96	Enterobacteria_phage	1.5e-65	100.0
WP_000095736.1\|3045068_3045296_+	DUF3950 domain-containing protein	A0A0P0ZE23	Stx2-converting_phage	1.7e-35	100.0
WP_012816791.1\|3045720_3045906_-	membrane protein	A0A0P0ZCT3	Stx2-converting_phage	1.2e-18	100.0
WP_000539792.1\|3046133_3046280_-	hypothetical protein	A0A0P0ZE99	Stx2-converting_phage	2.6e-16	100.0
WP_001056806.1\|3046279_3046849_-	hypothetical protein	A0A1I9LJR6	Stx_converting_phage	3.1e-105	100.0
WP_000992137.1\|3047119_3047653_-	lysozyme	B6DZ92	Enterobacteria_phage	3.5e-103	100.0
WP_000731259.1\|3047703_3048048_-	YdfR family protein	B6DZ91	Enterobacteria_phage	4.5e-59	100.0
WP_000284517.1\|3048052_3048268_-\|holin	class II holin family protein	A0A0P0ZC45	Stx2-converting_phage	4.5e-33	98.6
WP_000143067.1\|3048417_3050271_-	DUF1737 domain-containing protein	H6WZJ9	Escherichia_phage	0.0e+00	97.9
WP_000935548.1\|3051067_3052126_-	site-specific DNA-methyltransferase	S5MDR0	Escherichia_phage	1.1e-199	94.3
WP_000917750.1\|3052276_3052474_-	hypothetical protein	S5MQK8	Escherichia_phage	1.0e-28	98.5
WP_000640048.1\|3052715_3053246_-	DUF1133 family protein	A0A0U2S606	Escherichia_phage	9.3e-72	72.6
WP_000904166.1\|3053254_3053614_-	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	3.6e-35	60.9
WP_001302148.1\|3053626_3054673_-	DUF968 domain-containing protein	U5P0K4	Shigella_phage	4.2e-108	54.2
WP_010917803.1\|3054674_3054953_-	hypothetical protein	I6PCV7	Cronobacter_phage	2.2e-11	48.4
WP_001217394.1\|3055022_3055280_-	hypothetical protein	NA	NA	NA	NA
WP_000961820.1\|3055500_3055713_-	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	1.4e-15	70.0
WP_001449026.1\|3055991_3056750_-	AcfC family adhesin Paa	NA	NA	NA	NA
WP_001505071.1\|3057448_3057613_-	hypothetical protein	NA	NA	NA	NA
WP_000774808.1\|3057609_3058191_-	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	8.6e-79	80.2
WP_157825328.1\|3058377_3058920_-	replication protein	A0A0U2JGJ0	Escherichia_phage	1.5e-85	98.7
WP_000020556.1\|3058831_3059872_-	DNA-binding protein	A0A0U2RT81	Escherichia_phage	7.9e-91	87.2
WP_000705621.1\|3059843_3060395_-	hypothetical protein	NA	NA	NA	NA
WP_000912298.1\|3060378_3060606_-	transcriptional regulator	NA	NA	NA	NA
WP_000787428.1\|3060682_3061090_+	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	9.8e-29	49.6
WP_001240336.1\|3061353_3061653_+	hypothetical protein	NA	NA	NA	NA
WP_001171903.1\|3061725_3061944_+	hypothetical protein	NA	NA	NA	NA
WP_000394552.1\|3061966_3062374_+	hypothetical protein	A0A2R2Z306	Escherichia_phage	7.0e-11	37.8
WP_000920491.1\|3062351_3062585_-	hypothetical protein	NA	NA	NA	NA
WP_001356681.1\|3062578_3062746_-	hypothetical protein	NA	NA	NA	NA
WP_000449192.1\|3063143_3063332_+	cell division inhibition protein DicB	NA	NA	NA	NA
WP_001090200.1\|3063328_3063520_+	DUF1482 family protein	NA	NA	NA	NA
WP_000048549.1\|3063612_3066084_+	exonuclease	A0A192Y6E0	Salmonella_phage	1.5e-58	58.6
WP_000113189.1\|3066148_3066397_+	excisionase	NA	NA	NA	NA
WP_000113674.1\|3066374_3067505_+\|integrase	phage integrase Arm DNA-binding domain-containing protein	O21940	Phage_21	3.4e-103	51.4
3068717:3068731	attR	NA	NA	NA	NA

DBSCAN-SWA_11

3114201 : 3209206

101

Enterobacteria_phage(48.15%)

protease,tRNA,transposase,terminase,lysis,portal,tail,holin,head,integrase,capsid

attL 3137399:3137414|attR 3203109:3203124

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001299679.1\|3114201_3115458_-\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_001130692.1\|3115671_3116295_+	lipoprotein localization protein LolB	NA	NA	NA	NA
WP_001260332.1\|3116294_3117146_+	4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase	NA	NA	NA	NA
WP_001298109.1\|3117296_3118244_+	ribose-phosphate diphosphokinase	A0A2K9L2G2	Tupanvirus	3.9e-44	37.8
WP_001033352.1\|3118368_3120048_+	C4-dicarboxylic acid transporter DauA	A0A2H4J153	uncultured_Caudovirales_phage	1.3e-23	23.6
WP_000823885.1\|3120102_3120381_-	stress-induced protein YchH	NA	NA	NA	NA
WP_000152933.1\|3120658_3121243_+\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
WP_000505866.1\|3121359_3122451_+	redox-regulated ATPase YchF	NA	NA	NA	NA
WP_001303183.1\|3123294_3126180_+	autotransporter outer membrane beta-barrel domain-containing protein	NA	NA	NA	NA
WP_001310261.1\|3126279_3128199_-	PTS-dependent dihydroxyacetone kinase operon transcriptional regulator DhaR	NA	NA	NA	NA
WP_001295616.1\|3128905_3129517_-	membrane-bound lytic murein transglycosylase EmtA	NA	NA	NA	NA
WP_000051572.1\|3129616_3130531_+	muramoyltetrapeptide carboxypeptidase	NA	NA	NA	NA
WP_000340206.1\|3130626_3132363_+	potassium/proton antiporter	NA	NA	NA	NA
WP_162829348.1\|3132520_3133734_-\|transposase	IS3 family transposase	H6WZH1	Escherichia_phage	4.9e-169	99.7
WP_000197859.1\|3134071_3135142_-	catabolic alanine racemase DadX	NA	NA	NA	NA
WP_001266908.1\|3135151_3136450_-	D-amino acid dehydrogenase	NA	NA	NA	NA
WP_000190855.1\|3136812_3138345_+	SpoVR family protein	NA	NA	NA	NA
3137399:3137414	attL	NA	NA	NA	NA
WP_000234823.1\|3138396_3139116_-	fatty acid metabolism transcriptional regulator FadR	NA	NA	NA	NA
WP_000406391.1\|3139337_3140879_+	Na(+)/H(+) antiporter NhaB	NA	NA	NA	NA
WP_000943459.1\|3141024_3141555_+	disulfide bond formation protein DsbB	NA	NA	NA	NA
WP_000457644.1\|3141600_3142869_-	DNA polymerase V catalytic protein	I6RSM4	Salmonella_phage	3.0e-209	83.2
WP_000897378.1\|3142868_3143288_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	6.9e-38	62.1
WP_001304191.1\|3143660_3144572_+	hemolysin HlyE	NA	NA	NA	NA
WP_000807626.1\|3144778_3145240_-	YcgN family cysteine cluster protein	NA	NA	NA	NA
WP_000284277.1\|3145316_3145976_-	fumarylacetoacetate hydrolase family protein	NA	NA	NA	NA
WP_001295992.1\|3146047_3146341_-	YcgL domain-containing protein	NA	NA	NA	NA
WP_000874954.1\|3146352_3146511_-	hypothetical protein	NA	NA	NA	NA
WP_000695220.1\|3146581_3146983_+	PPC domain-containing protein	NA	NA	NA	NA
WP_001056834.1\|3147085_3147454_-	hypothetical protein	NA	NA	NA	NA
WP_000072536.1\|3147973_3148669_+	septum site-determining protein MinC	NA	NA	NA	NA
WP_000101055.1\|3148692_3149505_+	septum site-determining protein MinD	NA	NA	NA	NA
WP_001185665.1\|3149508_3149775_+	cell division topological specificity factor MinE	NA	NA	NA	NA
WP_000361110.1\|3151006_3151591_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_001201843.1\|3152089_3153043_+\|protease	omptin family outer membrane protease OmpT	NA	NA	NA	NA
WP_001226373.1\|3153229_3154714_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_000998048.1\|3155016_3156555_-\|transposase	IS66-like element ISEc8 family transposase	A0A0P0ZBS5	Stx2-converting_phage	1.5e-300	100.0
WP_000612591.1\|3156604_3156952_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.2e-61	100.0
WP_001171554.1\|3156948_3157329_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	1.4e-66	100.0
WP_000937476.1\|3157404_3157653_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	1.7e-12	76.5
WP_000239881.1\|3157709_3158378_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_000134810.1\|3158875_3159058_+	general stress protein	NA	NA	NA	NA
WP_001166090.1\|3159136_3159637_+	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_001079482.1\|3159673_3160180_+	ferritin-like domain-containing protein	NA	NA	NA	NA
WP_000488340.1\|3160198_3161089_+	manganese catalase family protein	NA	NA	NA	NA
WP_000885630.1\|3161208_3161790_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	6.1e-101	93.7
WP_000279120.1\|3161789_3164705_-\|tail	prophage tail fiber N-terminal domain-containing protein	Q6H9S9	Enterobacteria_phage	1.1e-57	98.3
WP_001230336.1\|3164769_3165369_-	Ail/Lom family outer membrane beta-barrel protein	A0A291AWV3	Escherichia_phage	3.0e-111	99.5
WP_000515612.1\|3165435_3168834_-	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	90.7
WP_162829202.1\|3168929_3170142_+\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	7.6e-170	100.0
WP_000090920.1\|3170207_3170840_-\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	1.7e-96	99.5
WP_000194779.1\|3170776_3171520_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	2.0e-149	97.6
WP_001152612.1\|3171525_3172224_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	2.1e-132	98.7
WP_000847331.1\|3172223_3172553_-\|tail	phage tail protein	A0A2R9YJM0	Escherichia_phage	2.5e-59	100.0
WP_001509030.1\|3172549_3175099_-\|tail	phage tail tape measure protein	A0A0K2FI43	Enterobacteria_phage	0.0e+00	87.2
WP_000459457.1\|3175091_3175526_-\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	6.9e-65	100.0
WP_000479161.1\|3175507_3175930_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.4e-70	96.4
WP_001143002.1\|3175945_3176686_-\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	8.3e-127	95.9
WP_000683105.1\|3176693_3177089_-\|tail	tail protein	A0A0K2FIF4	Enterobacteria_phage	1.0e-70	100.0
WP_000975100.1\|3177085_3177664_-\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	1.3e-79	99.0
WP_000752995.1\|3177675_3178029_-\|head,tail	head-tail joining protein	A0A2R9YJJ5	Escherichia_phage	9.9e-62	99.1
WP_000158906.1\|3178040_3178439_-	DNA-packaging protein FI	A0A0K2FIR1	Enterobacteria_phage	3.5e-63	98.5
WP_000063233.1\|3178480_3179506_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	5.6e-190	98.5
WP_001295978.1\|3179560_3179893_-\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	3.8e-55	99.1
WP_000123254.1\|3179902_3181222_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	3.4e-232	98.2
WP_001301524.1\|3181202_3182804_-\|portal	phage portal protein	A0A0K2FJC0	Enterobacteria_phage	1.4e-307	98.7
WP_000198153.1\|3182800_3183007_-	gpW family protein	A0A2R9YJL2	Escherichia_phage	2.2e-29	98.5
WP_024748455.1\|3183003_3184929_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.1
WP_000453564.1\|3184903_3185449_-	DNA-packaging protein	A0A0K2FIG2	Enterobacteria_phage	2.6e-93	97.8
WP_001300120.1\|3185837_3186032_+	YlcI/YnfO family protein	A0A0K2FIR8	Escherichia_phage	1.5e-27	98.4
WP_001031427.1\|3186196_3186403_-	hypothetical protein	A0A0K2FJ18	Enterobacteria_phage	5.8e-30	100.0
WP_000079504.1\|3186688_3187099_+	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	2.7e-71	98.5
WP_000738495.1\|3187390_3187684_+	serum resistance lipoprotein Bor	K7PL54	Enterobacteria_phage	1.5e-47	99.0
WP_010917798.1\|3187774_3187957_-\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	4.7e-15	93.3
WP_001180487.1\|3188173_3188650_-	glycoside hydrolase family protein	K7PKV2	Enterobacteria_phage	4.3e-84	95.6
WP_000544528.1\|3188636_3188942_-\|holin	phage holin family protein	A0A286N2Q5	Klebsiella_phage	7.0e-40	87.6
WP_001097228.1\|3189263_3189953_-	Q antiterminator encoded by prophage CP-933P	I6PDF8	Cronobacter_phage	1.7e-57	48.9
WP_000971093.1\|3189949_3190090_-	YlcG family protein	K7PHH3	Enterobacteria_phage	7.7e-10	71.1
WP_001099695.1\|3190086_3190449_-	crossover junction endodeoxyribonuclease RusA	K7PM48	Enterobacteria_phage	7.3e-60	95.7
WP_000774504.1\|3190445_3190736_-	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	2.8e-46	92.7
WP_000224907.1\|3190728_3190899_-	hypothetical protein	K7P7K0	Enterobacteria_phage	5.3e-13	67.9
WP_001053040.1\|3190898_3191354_-	recombination protein NinB	I6PD71	Cronobacter_phage	8.6e-58	64.9
WP_000709077.1\|3191855_3193382_-	recombinase family protein	Q3HQV4	Burkholderia_phage	1.2e-31	31.1
WP_001302833.1\|3193439_3193562_-	hypothetical protein	NA	NA	NA	NA
WP_001070446.1\|3193626_3193959_-	SMR family multidrug efflux protein EmrE	NA	NA	NA	NA
WP_000145915.1\|3194026_3194329_-	protein ren	A0A0N6WES4	Escherichia_phage	1.1e-42	95.7
WP_000788869.1\|3194325_3195027_-	Replication protein P	A0A0P0ZD31	Stx2-converting_phage	1.3e-129	99.6
WP_000088657.1\|3195951_3196188_+	excisionase	NA	NA	NA	NA
WP_000741454.1\|3196177_3197320_+\|integrase	phage integrase Arm DNA-binding domain-containing protein	O21940	Phage_21	8.1e-206	100.0
WP_000444477.1\|3197433_3198684_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	3.8e-23	100.0
WP_001248690.1\|3198855_3199509_+	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
WP_000476093.1\|3199518_3199980_+	phosphatase NudJ	NA	NA	NA	NA
WP_001301861.1\|3200033_3201140_+\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
WP_001301618.1\|3201175_3201817_+	high frequency lysogenization protein HflD	NA	NA	NA	NA
WP_000423729.1\|3201820_3203191_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	4.2e-108	44.9
3203109:3203124	attR	NA	NA	NA	NA
WP_001265474.1\|3203359_3204031_+	two-component system response regulator PhoP	NA	NA	NA	NA
WP_000735407.1\|3204030_3205491_+	two-component system sensor histidine kinase PhoQ	NA	NA	NA	NA
WP_000133424.1\|3206091_3206373_-	hypothetical protein	NA	NA	NA	NA
WP_000835281.1\|3206628_3207171_-\|terminase	terminase small subunit	O64316	Escherichia_phage	1.8e-33	44.2
WP_000224603.1\|3207376_3207790_-	hypothetical protein	NA	NA	NA	NA
WP_000380883.1\|3207802_3208138_-\|head	head decoration protein	NA	NA	NA	NA
WP_000907465.1\|3208150_3209206_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.5e-68	43.3

DBSCAN-SWA_12

3215298 : 3273952

Enterobacteria_phage(26.32%)

transposase,terminase,portal,tail,holin,head,integrase,capsid

attL 3259519:3259539|attR 3280609:3280629

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_032174463.1\|3215298_3216516_-\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	6.1e-127	56.8
WP_162829200.1\|3216514_3217727_+\|transposase	IS3 family transposase	Q6H9S6	Enterobacteria_phage	1.5e-170	100.0
WP_001301987.1\|3218089_3219211_+	[50S ribosomal protein L16]-arginine 3-hydroxylase	NA	NA	NA	NA
WP_000359446.1\|3219259_3220486_-	peptidase T	NA	NA	NA	NA
WP_000531594.1\|3220735_3221872_+	spermidine/putrescine ABC transporter ATP-binding protein PotA	Q6GZ03	Mycoplasma_phage	5.5e-29	39.8
WP_000799385.1\|3221855_3222719_+	spermidine/putrescine ABC transporter permease PotB	Q6GZ02	Mycoplasma_phage	6.7e-11	28.7
WP_000938118.1\|3223082_3224444_+	type III secretion system effector EspK	Q9MBM1	Phage_Gifsy-1	1.4e-50	29.2
WP_001303921.1\|3224504_3224780_+	hypothetical protein	NA	NA	NA	NA
WP_001301984.1\|3227088_3230490_-	type III secretion system effector EspN	A0A0N7KZG3	Stx2-converting_phage	1.7e-219	39.2
WP_001301673.1\|3231080_3233429_-	type III secretion system effector E3 ubiquitin ligase NleL	NA	NA	NA	NA
WP_115801847.1\|3233448_3233538_-	hypothetical protein	NA	NA	NA	NA
WP_071526731.1\|3233550_3233787_-\|tail	tail assembly protein	B6ETG3	Enterobacteria_phage	2.8e-20	80.3
WP_000967271.1\|3233732_3234470_-\|tail	phage tail protein	B6ETG2	Enterobacteria_phage	8.2e-151	100.0
WP_000835336.1\|3234523_3235402_-	phage repressor protein/antirepressor Ant	I6R977	Salmonella_phage	2.5e-93	77.2
WP_010904626.1\|3235704_3235815_-	Arc family DNA-binding protein	NA	NA	NA	NA
WP_000170104.1\|3235924_3236179_+	Arc family DNA-binding protein	NA	NA	NA	NA
WP_001152182.1\|3236195_3236894_-\|tail	phage minor tail protein L	A0A0P0ZBE3	Stx2-converting_phage	8.1e-132	98.3
WP_000807954.1\|3236893_3237235_-\|tail	phage tail protein	A0A0P0ZBQ8	Stx2-converting_phage	5.1e-63	100.0
WP_000212827.1\|3237227_3240470_-\|tail	phage tail tape measure protein	A0A0P0ZDY0	Stx2-converting_phage	0.0e+00	100.0
WP_001453746.1\|3240517_3240727_-	DUF4035 domain-containing protein	A0A0P0ZED8	Stx2-converting_phage	2.6e-33	100.0
WP_000710952.1\|3240822_3241197_-\|tail	phage tail assembly chaperone	A0A0P0ZE84	Stx2-converting_phage	4.6e-65	100.0
WP_001275499.1\|3241211_3241928_-	immunoglobulin domain-containing protein	A0A0P0ZDV1	Stx2-converting_phage	8.0e-127	99.6
WP_000133388.1\|3241986_3242331_-	DUF3168 domain-containing protein	A0A0P0ZC17	Stx2-converting_phage	1.4e-57	100.0
WP_000573374.1\|3242327_3242774_-	HK97 gp10 family phage protein	A0A0P0ZCD2	Stx2-converting_phage	8.1e-77	100.0
WP_001007901.1\|3242770_3243121_-\|head	phage head closure protein	A0A0P0ZCU6	Stx2-converting_phage	7.0e-60	100.0
WP_000126019.1\|3243130_3243457_-\|head,tail	phage gp6-like head-tail connector protein	A0A0P0ZDA0	Stx2-converting_phage	9.2e-54	100.0
WP_000267292.1\|3243536_3246038_-\|portal	phage portal protein	B6DZA1	Enterobacteria_phage	0.0e+00	99.2
WP_001063099.1\|3245983_3246205_-	hypothetical protein	B6DZA0	Enterobacteria_phage	5.8e-36	100.0
WP_000172999.1\|3246249_3248187_-\|capsid	phage major capsid protein	B6DZ99	Enterobacteria_phage	0.0e+00	100.0
WP_001301491.1\|3248250_3249912_-\|terminase	terminase large subunit	A0A0P0ZD10	Stx2-converting_phage	0.0e+00	100.0
WP_000958387.1\|3249908_3250472_-\|terminase	terminase small subunit	A0A0N7KZJ8	Stx2-converting_phage	8.1e-90	100.0
WP_000279796.1\|3250763_3251129_-	HNH endonuclease	B6ETE5	Enterobacteria_phage	3.1e-66	100.0
WP_001302977.1\|3251170_3251356_+	DUF3950 domain-containing protein	H6WZK6	Escherichia_phage	3.7e-20	90.4
WP_000347013.1\|3251485_3251626_-	hypothetical protein	NA	NA	NA	NA
WP_000735655.1\|3251982_3252207_-	hypothetical protein	NA	NA	NA	NA
WP_001208682.1\|3252271_3252478_-	hypothetical protein	H6WRZ6	Salmonella_phage	7.1e-12	64.7
WP_000539792.1\|3252705_3252852_-	hypothetical protein	A0A0P0ZE99	Stx2-converting_phage	2.6e-16	100.0
WP_001056806.1\|3252851_3253421_-	hypothetical protein	A0A1I9LJR6	Stx_converting_phage	3.1e-105	100.0
WP_000992148.1\|3253691_3254225_-	lysozyme	B6DZ92	Enterobacteria_phage	3.0e-102	99.4
WP_000731241.1\|3254275_3254620_-	YdfR family protein	A0A0P0ZD64	Stx2-converting_phage	1.7e-58	99.1
WP_000284518.1\|3254624_3254840_-\|holin	class II holin family protein	Q6H9V8	Enterobacteria_phage	2.0e-33	100.0
WP_001289717.1\|3254915_3255185_-	DUF826 domain-containing protein	A0A2R2Z348	Escherichia_phage	8.2e-08	75.3
WP_001213059.1\|3255222_3255405_-	DUF1378 family protein	A0A2R2Z345	Escherichia_phage	1.0e-14	67.8
WP_000023167.1\|3255552_3257490_-	SASA family carbohydrate esterase	Q6H9W1	Enterobacteria_phage	2.5e-292	76.8
WP_000216629.1\|3257804_3257972_-	DUF3927 family protein	H6WZJ7	Escherichia_phage	1.9e-10	72.5
WP_000762929.1\|3258568_3259390_-	antitermination protein	K7P7B9	Enterobacteria_phage	1.3e-83	58.6
WP_001217410.1\|3259386_3259761_-	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	2.1e-33	62.7
3259519:3259539	attL	NA	NA	NA	NA
WP_001265159.1\|3259773_3260823_-	DUF968 domain-containing protein	U5P0K4	Shigella_phage	1.4e-106	53.2
WP_001341388.1\|3260824_3261103_-	hypothetical protein	I6PCV7	Cronobacter_phage	5.7e-12	48.4
WP_000887477.1\|3261270_3261483_-	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	3.1e-18	68.6
WP_001278450.1\|3261671_3261776_-	hypothetical protein	NA	NA	NA	NA
WP_000207955.1\|3261891_3262479_-	DUF551 domain-containing protein	K7PH57	Enterobacteria_phage	7.5e-38	45.8
WP_001014296.1\|3262481_3262673_-	hypothetical protein	G9L660	Escherichia_phage	1.6e-26	98.4
WP_000515959.1\|3262674_3263112_-	ead/Ea22-like family protein	Q8VNQ2	Enterobacteria_phage	1.9e-38	94.0
WP_000156547.1\|3263098_3263416_-	hypothetical protein	A0A088CQ13	Enterobacteria_phage	4.4e-45	90.0
WP_001017965.1\|3263369_3263687_-	DUF4752 family protein	A0A1I9LJV1	Stx_converting_phage	2.1e-42	92.4
WP_001310212.1\|3263676_3263979_-	DUF4406 domain-containing protein	A0A0U2SAZ1	Escherichia_phage	1.9e-45	87.9
WP_072140318.1\|3263975_3264257_-	DNA-binding protein	A0A222YXX1	Escherichia_phage	1.4e-29	73.1
WP_000451012.1\|3264289_3265006_-	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	2.1e-71	62.4
WP_072143019.1\|3265039_3265582_-	replication protein	A0A0U2JGJ0	Escherichia_phage	2.3e-81	92.2
WP_001262323.1\|3265493_3266531_-	hypothetical protein	A0A0U2RT81	Escherichia_phage	3.3e-89	79.5
WP_000693962.1\|3266599_3267025_-	Rha family transcriptional regulator	NA	NA	NA	NA
WP_000711018.1\|3267008_3267332_-	transcriptional regulator	A0A0R6PH31	Moraxella_phage	6.2e-10	44.9
WP_000948454.1\|3267456_3267933_+	hypothetical protein	A0A2D1GNH0	Pseudomonas_phage	5.7e-12	53.4
WP_001414141.1\|3268248_3268401_+	DUF1391 family protein	M4QQ57	Salicola_phage	1.0e-07	55.3
WP_000559928.1\|3268515_3269031_-	hypothetical protein	NA	NA	NA	NA
WP_077699040.1\|3269163_3269553_+	3'-5' exoribonuclease	K7PLW7	Enterobacteria_phage	1.3e-38	60.0
WP_000003742.1\|3269614_3269884_+	excisionase	NA	NA	NA	NA
WP_000074985.1\|3269852_3270971_+\|integrase	phage integrase Arm DNA-binding domain-containing protein	Q77Z04	Phage_21	1.0e-83	43.9
WP_000580316.1\|3271137_3271932_+	spermidine/putrescine ABC transporter permease PotC	NA	NA	NA	NA
WP_000759316.1\|3271928_3272975_+	spermidine/putrescine ABC transporter substrate-binding protein PotD	NA	NA	NA	NA
WP_000952736.1\|3273130_3273952_-	NAD-dependent protein deacylase	A0A2I7S9Y2	Vibrio_phage	5.6e-23	35.6
3280609:3280629	attR	NA	NA	NA	NA

DBSCAN-SWA_13

3524934 : 3580279

Escherichia_phage(27.91%)

protease,transposase,portal,tail,holin,head,integrase,capsid

attL 3526869:3526884|attR 3582044:3582059

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000003653.1\|3524934_3525522_-\|protease	hydrogenase 1 maturation protease	NA	NA	NA	NA
WP_001186424.1\|3525518_3526226_-	Ni/Fe-hydrogenase b-type cytochrome subunit	NA	NA	NA	NA
WP_000107391.1\|3526244_3528038_-	Ni/Fe-hydrogenase large subunit	NA	NA	NA	NA
3526869:3526884	attL	NA	NA	NA	NA
WP_001301613.1\|3528034_3529153_-	hydrogenase 1 small subunit	NA	NA	NA	NA
WP_001023407.1\|3531145_3531415_-\|tail	phage tail fiber C-terminal domain-containing protein	H6WZN0	Escherichia_phage	1.4e-44	98.9
WP_000268855.1\|3531416_3532730_-\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0P0ZE15	Stx2-converting_phage	2.0e-83	99.1
WP_001230444.1\|3532794_3533394_-	Ail/Lom family outer membrane beta-barrel protein	A0A0P0ZCF6	Stx2-converting_phage	8.8e-111	99.0
WP_000515109.1\|3533461_3536935_-	host specificity protein J	A0A0P0ZCI5	Stx2-converting_phage	0.0e+00	96.2
WP_000649827.1\|3537068_3537596_+	superoxide dismutase family protein	Q9MC02	Salmonella_phage	4.8e-52	55.8
WP_050546863.1\|3537786_3538419_-\|tail	tail assembly protein	A0A0P0ZC16	Stx2-converting_phage	5.8e-105	99.5
WP_000194760.1\|3538364_3539108_-\|tail	phage tail protein	A0A0P0ZE89	Stx2-converting_phage	2.4e-150	99.6
WP_001302968.1\|3539118_3539817_-\|tail	phage minor tail protein L	A0A0P0ZBE3	Stx2-converting_phage	2.9e-129	97.8
WP_000847298.1\|3539816_3540146_-\|tail	phage tail protein	Q687F2	Enterobacteria_phage	4.3e-59	100.0
WP_000082473.1\|3540142_3542722_-\|tail	phage tail tape measure protein	A0A2R9YJM8	Escherichia_phage	0.0e+00	79.9
WP_000533402.1\|3542702_3543116_-\|tail	phage tail assembly protein T	S5MDP5	Escherichia_phage	1.6e-42	82.2
WP_000479117.1\|3543142_3543574_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.4e-41	68.1
WP_029208397.1\|3543587_3544328_-\|tail	phage tail protein	Q687F6	Enterobacteria_phage	3.6e-130	98.0
WP_001301534.1\|3544309_3544576_-\|capsid	major capsid protein	NA	NA	NA	NA
WP_000256723.1\|3544633_3544981_-\|head	head decoration protein	C6ZCY1	Enterobacteria_phage	2.6e-22	58.1
WP_001254002.1\|3545017_3546523_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	1.2e-100	54.2
WP_000831796.1\|3546512_3548105_-\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	8.7e-182	60.5
WP_000259002.1\|3548101_3548308_-\|head,tail	head-tail joining protein	K7PM10	Enterobacteria_phage	7.9e-11	56.9
WP_000998048.1\|3550484_3552023_-\|transposase	IS66-like element ISEc8 family transposase	A0A0P0ZBS5	Stx2-converting_phage	1.5e-300	100.0
WP_000612591.1\|3552072_3552420_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.2e-61	100.0
WP_001171554.1\|3552416_3552797_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	1.4e-66	100.0
WP_000235421.1\|3552872_3553148_-	hypothetical protein	A0A1I9KFT4	Aeromonas_phage	2.4e-10	51.5
WP_000411791.1\|3553898_3554105_+\|holin	class II holin family protein	Q6H9V8	Enterobacteria_phage	4.5e-30	97.1
WP_000138558.1\|3554360_3554633_-	hypothetical protein	NA	NA	NA	NA
WP_001003118.1\|3554792_3555326_+	lysozyme	A0A1U9AJ98	Stx1_converting_phage	3.1e-99	94.4
WP_000675931.1\|3555546_3555660_+	hypothetical protein	A0A2L1IV24	Escherichia_phage	6.6e-12	100.0
WP_012816791.1\|3555881_3556067_+	membrane protein	A0A0P0ZCT3	Stx2-converting_phage	1.2e-18	100.0
WP_001303878.1\|3556594_3556909_+	PerC family transcriptional regulator	NA	NA	NA	NA
WP_162829202.1\|3557113_3558327_-\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	7.6e-170	100.0
WP_000874392.1\|3558502_3560353_-	SASA family carbohydrate esterase	B6DZ89	Enterobacteria_phage	0.0e+00	96.1
WP_000261909.1\|3561119_3561833_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_000265265.1\|3562453_3563272_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
WP_000090264.1\|3563423_3563795_-	antitermination protein	Q777W5	Enterobacteria_phage	4.0e-53	83.2
WP_001217436.1\|3563784_3564156_-	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	1.3e-35	63.7
WP_001265172.1\|3564168_3565218_-	DUF968 domain-containing protein	U5P0K4	Shigella_phage	1.2e-110	54.9
WP_001341388.1\|3565219_3565498_-	hypothetical protein	I6PCV7	Cronobacter_phage	5.7e-12	48.4
WP_000813263.1\|3565665_3565821_-	type I toxin-antitoxin system toxin HokD	A0A0U2QV81	Escherichia_phage	1.9e-17	94.1
WP_000955173.1\|3565922_3566060_+	hypothetical protein	Q7Y2Q9	Escherichia_phage	5.4e-08	96.6
WP_000160654.1\|3566425_3567199_+	alpha/beta hydrolase	NA	NA	NA	NA
WP_001151233.1\|3567550_3567964_-	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	9.8e-61	89.1
WP_000450992.1\|3567979_3568750_-	DUF1627 domain-containing protein	A0A0U2SAW4	Escherichia_phage	6.1e-80	64.5
WP_000788751.1\|3568771_3569518_-	ATP-binding protein	A0A088CBP4	Shigella_phage	6.2e-114	84.2
WP_001205823.1\|3569524_3570616_-	hypothetical protein	V5URT9	Shigella_phage	5.1e-133	70.0
WP_000273724.1\|3570694_3571150_+	hypothetical protein	NA	NA	NA	NA
WP_000693855.1\|3571356_3571782_-	Rha family transcriptional regulator	NA	NA	NA	NA
WP_000887453.1\|3571765_3572038_-	helix-turn-helix domain-containing protein	A0A0U2S629	Escherichia_phage	1.1e-12	45.8
WP_000986592.1\|3572146_3572548_+	helix-turn-helix domain-containing protein	A0A1B5FPF4	Escherichia_phage	7.4e-13	54.5
WP_000536233.1\|3572575_3572767_+	hypothetical protein	NA	NA	NA	NA
WP_001303876.1\|3572766_3573054_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
WP_000379575.1\|3573331_3573487_+	DUF1391 family protein	M4QQ57	Salicola_phage	3.0e-07	53.2
WP_000394511.1\|3573628_3574018_+	hypothetical protein	NA	NA	NA	NA
WP_001133046.1\|3574204_3574390_-	hypothetical protein	NA	NA	NA	NA
WP_000413705.1\|3574963_3575152_+	cell division inhibition protein DicB	NA	NA	NA	NA
WP_001098307.1\|3575148_3575340_+	DUF1482 family protein	NA	NA	NA	NA
WP_000034474.1\|3575433_3577905_+	exonuclease	A0A192Y6E0	Salmonella_phage	8.8e-56	56.6
WP_000273151.1\|3577972_3578215_+	DUF4224 domain-containing protein	NA	NA	NA	NA
WP_001299351.1\|3578192_3579212_+\|integrase	tyrosine-type recombinase/integrase	A0A192Y7M7	Salmonella_phage	1.3e-85	49.7
WP_000375128.1\|3579619_3580279_+\|protease	FtsH protease modulator YccA	A0A2H4JFM9	uncultured_Caudovirales_phage	1.8e-48	55.3
3582044:3582059	attR	NA	NA	NA	NA

DBSCAN-SWA_14

3811207 : 3849303

Enterobacteria_phage(52.5%)

protease,terminase,lysis,portal,tail,holin,integrase

attL 3810792:3810806|attR 3849377:3849391

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3810792:3810806	attL	NA	NA	NA	NA
WP_001247925.1\|3811207_3811906_-\|protease	T3SS effector zinc metalloprotease NleD	NA	NA	NA	NA
WP_000951026.1\|3812136_3813018_-	type III secretion system effector kinase NleH1-1	A5LH48	Enterobacteria_phage	8.6e-147	90.1
WP_072127173.1\|3813186_3813348_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	3.9e-13	72.5
WP_115801843.1\|3813844_3814864_-\|protease	type III secretion system effector zinc metalloprotease NleC	NA	NA	NA	NA
WP_000950813.1\|3814897_3815878_-	type III secretion system effector arginine glycosyltransferase NleB2	Q8HAB2	Salmonella_phage	2.9e-87	49.5
WP_001024022.1\|3816054_3816324_-\|tail	phage tail fiber C-terminal domain-containing protein	A0A1I9LJT0	Stx_converting_phage	4.9e-45	98.9
WP_000741874.1\|3816325_3817642_-\|tail	prophage tail fiber N-terminal domain-containing protein	Q6H9S9	Enterobacteria_phage	2.0e-67	95.6
WP_001233141.1\|3817701_3818301_-	Ail/Lom family outer membrane beta-barrel protein	H6WZM8	Escherichia_phage	1.8e-103	92.5
WP_001508920.1\|3821845_3822454_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	7.1e-100	93.6
WP_000194779.1\|3822390_3823134_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	2.0e-149	97.6
WP_001152360.1\|3823139_3823838_-\|tail	phage minor tail protein L	A5LH40	Enterobacteria_phage	3.9e-134	99.1
WP_000447253.1\|3823847_3824177_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.7e-60	100.0
WP_000371994.1\|3824176_3827242_-\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	0.0e+00	98.9
WP_001161009.1\|3827213_3827543_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	7.6e-56	100.0
WP_001300035.1\|3827551_3827938_-\|tail	phage minor tail protein G	A0A291AWW5	Escherichia_phage	1.6e-65	100.0
WP_000211123.1\|3827998_3828742_-\|tail	phage tail protein	A5LH35	Enterobacteria_phage	9.5e-131	98.0
WP_001079422.1\|3828752_3829154_-\|tail	tail protein	A5LH34	Enterobacteria_phage	2.0e-71	98.5
WP_000677094.1\|3829150_3829729_-\|tail	phage tail protein	A5LH33	Enterobacteria_phage	6.1e-101	99.0
WP_001283153.1\|3829740_3830016_-	DNA breaking-rejoining protein	K7PH43	Enterobacteria_phage	2.3e-45	100.0
WP_001097050.1\|3830008_3830332_-	DUF2190 family protein	A0A291AWX2	Escherichia_phage	8.5e-52	100.0
WP_001136598.1\|3830418_3832446_-\|protease	Clp protease ClpP	K7PGT6	Enterobacteria_phage	0.0e+00	99.2
WP_127446149.1\|3832390_3832726_-\|portal	phage portal protein	A5LH29	Enterobacteria_phage	9.1e-57	99.1
WP_010904538.1\|3832847_3833972_-\|portal	phage portal protein	K7PJP3	Enterobacteria_phage	5.4e-194	99.4
WP_001072975.1\|3833899_3834112_-	hypothetical protein	A5LH28	Enterobacteria_phage	1.1e-31	100.0
WP_000934137.1\|3834108_3836211_-\|terminase	phage terminase large subunit family protein	A0A291AWY5	Escherichia_phage	0.0e+00	96.7
WP_001139679.1\|3837375_3837528_-	hypothetical protein	K7PKL2	Enterobacteria_phage	8.9e-20	96.0
WP_000092302.1\|3837515_3837983_-\|lysis	lysis protein	A0A291AWW3	Escherichia_phage	9.4e-76	97.4
WP_000075107.1\|3837979_3838477_-	lysozyme RrrD	A0A1B5FP97	Escherichia_phage	7.1e-90	98.2
WP_000284524.1\|3838476_3838692_-\|holin	class II holin family protein	A0A0P0ZC45	Stx2-converting_phage	4.5e-33	98.6
WP_000499454.1\|3839314_3839473_-	DUF3927 family protein	NA	NA	NA	NA
WP_001302581.1\|3839558_3840302_-	hypothetical protein	NA	NA	NA	NA
WP_001097238.1\|3840485_3841175_-	Q antiterminator encoded by prophage CP-933P	I6PDF8	Cronobacter_phage	1.5e-58	48.1
WP_032160865.1\|3841189_3841312_-	YlcG family protein	NA	NA	NA	NA
WP_000750155.1\|3841649_3842609_+	lipid A deacylase LpxR family protein	NA	NA	NA	NA
WP_001028857.1\|3842820_3843486_-	serine/threonine protein phosphatase	Q5TJL8	Enterobacteria_phage	9.4e-130	99.1
WP_001108055.1\|3843482_3844103_-	recombination protein NinG	Q716C3	Shigella_phage	1.6e-94	96.1
WP_000567001.1\|3844095_3844266_-	protein ninF	Q716C4	Shigella_phage	7.9e-25	96.4
WP_001254218.1\|3844262_3844445_-	NinE family protein	Q8H9Z6	Enterobacteria_phage	4.8e-28	96.7
WP_000186844.1\|3845142_3845823_+	YqaJ viral recombinase family protein	A0A0P0ZCD4	Stx2-converting_phage	3.5e-132	99.6
WP_000682316.1\|3845819_3846002_+	DUF1317 domain-containing protein	A0A0P0ZAS9	Stx2-converting_phage	4.1e-27	95.0
WP_000548536.1\|3845974_3846166_+	DUF1382 family protein	A0A0P0ZC67	Stx2-converting_phage	1.1e-25	96.8
WP_023436627.1\|3846176_3846458_+	hypothetical protein	A0A0P0ZE02	Stx2-converting_phage	1.6e-46	97.8
WP_000763363.1\|3846556_3846778_+	TraR/DksA family transcriptional regulator	A0A0N7C211	Escherichia_phage	6.4e-35	98.6
WP_000120056.1\|3846988_3847591_-	hypothetical protein	NA	NA	NA	NA
WP_000545728.1\|3847833_3848001_+	hypothetical protein	A0A0K2FJ46	Enterobacteria_phage	1.3e-27	98.2
WP_001303849.1\|3848040_3848259_+	excisionase	Q77WA4	Escherichia_phage	3.7e-35	100.0
WP_089625990.1\|3848364_3849303_+\|integrase	tyrosine-type recombinase/integrase	K7P6P6	Enterobacteria_phage	2.0e-173	99.7
3849377:3849391	attR	NA	NA	NA	NA

DBSCAN-SWA_15

4392470 : 4473024

Shigella_phage(43.33%)

protease,transposase,terminase,lysis,portal,plate,tail,holin,head,integrase,capsid

attL 4429586:4429632|attR 4469122:4469168

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_000998048.1\|4392470_4394009_-\|transposase	IS66-like element ISEc8 family transposase	A0A0P0ZBS5	Stx2-converting_phage	1.5e-300	100.0
WP_000612591.1\|4394058_4394406_-	IS66 family insertion sequence element accessory protein TnpB	A0A0P0ZBY2	Stx2-converting_phage	2.2e-61	100.0
WP_001171554.1\|4394402_4394783_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	1.4e-66	100.0
WP_000803998.1\|4395046_4395310_+	type B 50S ribosomal protein L31	NA	NA	NA	NA
WP_000866436.1\|4395309_4395450_+	50S ribosomal protein L36	NA	NA	NA	NA
WP_001147284.1\|4395519_4395711_-	hypothetical protein	NA	NA	NA	NA
WP_000389022.1\|4396535_4397078_+	ECP biosynthesis operon DNA-binding transcriptional regulator EcpR	NA	NA	NA	NA
WP_000730972.1\|4397152_4397740_+	common pilus major fimbrillin subunit EcpA	NA	NA	NA	NA
WP_000716386.1\|4397797_4398466_+	fimbrial chaperone EcpB	NA	NA	NA	NA
WP_001131063.1\|4398491_4401017_+	fimbrial usher EcpC	NA	NA	NA	NA
WP_001265657.1\|4401006_4402650_+	fimbrial adhesin EcpD	NA	NA	NA	NA
WP_001301550.1\|4402618_4403329_+	fimbrial chaperone EcpE	NA	NA	NA	NA
WP_001303809.1\|4403641_4403971_+	YkgJ family cysteine cluster protein	NA	NA	NA	NA
WP_001019920.1\|4404218_4404833_-	YagU family protein	NA	NA	NA	NA
WP_000070685.1\|4405250_4405940_+	aldehyde dehydrogenase iron-sulfur subunit	NA	NA	NA	NA
WP_000643340.1\|4405936_4406893_+	aldehyde oxidoreductase FAD-binding subunit PaoB	NA	NA	NA	NA
WP_000667043.1\|4406889_4409088_+	aldehyde oxidoreductase molybdenum-binding subunit PaoC	A0A0P0I429	Acinetobacter_phage	1.5e-38	25.7
WP_000121344.1\|4409097_4410054_+	molybdenum cofactor insertion chaperone PaoD	NA	NA	NA	NA
WP_000171065.1\|4410232_4411360_-	MFS transporter	NA	NA	NA	NA
WP_001303808.1\|4411501_4412560_-	alpha/beta hydrolase	NA	NA	NA	NA
WP_010917758.1\|4412805_4413708_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_001301751.1\|4414410_4414689_-	hypothetical protein	NA	NA	NA	NA
WP_000361969.1\|4414855_4415578_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_000687183.1\|4415676_4416576_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_000016225.1\|4418339_4420673_-	toprim domain-containing protein	Q7M2A8	Enterobacteria_phage	0.0e+00	72.5
WP_000562750.1\|4420686_4421010_-	DUF5375 family protein	NA	NA	NA	NA
WP_001071227.1\|4421009_4421231_-	hypothetical protein	NA	NA	NA	NA
WP_000973389.1\|4421227_4421785_-	ash family protein	Q7M2A7	Enterobacteria_phage	9.3e-30	64.9
WP_001244581.1\|4421781_4422042_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	1.3e-23	65.1
WP_000154958.1\|4422975_4423728_+	septation initiation protein	NA	NA	NA	NA
WP_000968317.1\|4423724_4424276_+	Polarity suppression protein	NA	NA	NA	NA
WP_001185340.1\|4424281_4424554_+	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_174844922.1\|4424963_4425530_-	hypothetical protein	NA	NA	NA	NA
WP_000647284.1\|4425529_4426120_-	hypothetical protein	NA	NA	NA	NA
WP_032161214.1\|4426150_4426753_-	AAA family ATPase	NA	NA	NA	NA
WP_000251694.1\|4426774_4427233_-	hypothetical protein	NA	NA	NA	NA
WP_001303996.1\|4427232_4427850_-	hypothetical protein	NA	NA	NA	NA
WP_000082144.1\|4427822_4428239_-	hypothetical protein	NA	NA	NA	NA
WP_001130487.1\|4428242_4429424_-\|integrase	tyrosine-type recombinase/integrase	Q7M297	Enterobacteria_phage	2.4e-144	61.3
4429586:4429632	attL	NA	NA	NA	NA
WP_000246059.1\|4430386_4431130_-	AraC family transcriptional regulator	NA	NA	NA	NA
WP_000355484.1\|4431954_4432728_+	hypothetical protein	G9IA57	Pseudomonas_phage	2.4e-36	38.5
WP_000905124.1\|4432788_4433343_-	site-specific DNA recombinase	A0A0F7LA37	Escherichia_phage	2.8e-87	87.8
WP_001145352.1\|4433373_4433892_+\|tail	tail fiber protein	A0A0F7LCR3	Escherichia_phage	1.2e-55	62.0
WP_000368084.1\|4433891_4434494_+\|tail	tail fiber assembly protein	M1SV83	Escherichia_phage	1.2e-99	90.5
WP_001008234.1\|4434465_4434909_-\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	2.2e-82	100.0
WP_032195359.1\|4434929_4435325_-	hypothetical protein	A0A0F7LBW5	Escherichia_phage	4.8e-65	96.9
WP_000383550.1\|4435595_4436180_-	YmfQ family protein	O22003	Shigella_phage	7.8e-112	98.5
WP_000785302.1\|4436170_4437229_-\|plate	baseplate J/gp47 family protein	Q8SBG4	Shigella_phage	1.6e-200	98.9
WP_000424732.1\|4437215_4437641_-	phage GP46 family protein	U5P0R9	Shigella_phage	2.3e-81	100.0
WP_001259066.1\|4437640_4438189_-\|plate	phage baseplate assembly protein	U5P081	Shigella_phage	3.6e-95	97.8
WP_000999513.1\|4438188_4439268_-\|plate	baseplate protein	U5P0H6	Shigella_phage	9.1e-207	99.7
WP_000219910.1\|4439264_4440593_-	DNA circularization N-terminal domain-containing protein	Q8SBG8	Shigella_phage	2.5e-246	98.9
WP_000807197.1\|4440653_4442489_-\|tail	phage tail tape measure protein	Q8SBG9	Shigella_phage	1.5e-307	99.7
WP_000661054.1\|4442630_4442900_-\|tail	phage tail assembly protein	M1FPE4	Enterobacteria_phage	3.5e-43	100.0
WP_000090993.1\|4442899_4443256_-\|tail	phage tail tube protein	U5P076	Shigella_phage	1.2e-62	99.2
WP_000155728.1\|4443255_4444752_-\|tail	phage tail sheath subtilisin-like domain-containing protein	M1FN90	Enterobacteria_phage	1.1e-271	98.8
WP_000497751.1\|4444735_4444906_-	DUF2635 domain-containing protein	Q8SBH3	Shigella_phage	9.3e-26	100.0
WP_000779288.1\|4444914_4445475_-	hypothetical protein	M1FQV7	Enterobacteria_phage	6.8e-105	99.5
WP_000224836.1\|4445471_4445978_-	hypothetical protein	Q8SBH5	Shigella_phage	2.9e-83	92.9
WP_000702395.1\|4445952_4446363_-\|head	phage head closure protein	M1FJ87	Enterobacteria_phage	5.7e-69	93.4
WP_000924828.1\|4446359_4446683_-\|head,tail	phage gp6-like head-tail connector protein	Q8SBH7	Shigella_phage	3.5e-53	100.0
WP_000766100.1\|4446761_4447991_-\|capsid	phage major capsid protein	Q8SBH8	Shigella_phage	7.6e-226	99.3
WP_000999805.1\|4448001_4448604_-\|head,protease	HK97 family phage prohead protease	Q8SBH9	Shigella_phage	6.8e-111	100.0
WP_000923141.1\|4448596_4449823_-\|portal	phage portal protein	Q8SBI0	Shigella_phage	4.1e-240	98.8
WP_000838374.1\|4449812_4449974_-	hypothetical protein	NA	NA	NA	NA
WP_128484532.1\|4449970_4451467_-\|terminase	terminase large subunit	A0A1C9IIA1	Salmonella_phage	5.3e-290	98.8
WP_000929175.1\|4451700_4452195_-\|terminase	phage terminase small subunit P27 family	U5P067	Shigella_phage	3.9e-88	99.4
WP_162829202.1\|4452597_4453810_+\|transposase	IS3 family transposase	A0A0N7C1X7	Escherichia_phage	7.6e-170	100.0
WP_000738423.1\|4454509_4454803_+	increased serum survival lipoprotein Iss	K7PL54	Enterobacteria_phage	2.0e-44	91.8
WP_001228695.1\|4454893_4455076_-\|lysis	prophage lysis lipoprotein RzoD	K7PHU6	Enterobacteria_phage	2.9e-17	98.3
WP_001197766.1\|4455292_4455769_-	glycoside hydrolase family protein	K7PKV2	Enterobacteria_phage	3.0e-85	96.2
WP_001120501.1\|4455772_4456108_-\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	2.0e-59	99.1
WP_001449601.1\|4456244_4456538_-	site-specific DNA-methyltransferase	Q8SBE2	Shigella_phage	1.5e-42	90.7
WP_001310393.1\|4456816_4457050_-	hypothetical protein	NA	NA	NA	NA
WP_000484663.1\|4457193_4457733_-	hypothetical protein	NA	NA	NA	NA
WP_001008431.1\|4457947_4458700_-	antitermination protein	Q8SBE4	Shigella_phage	1.7e-135	98.0
WP_001360050.1\|4458713_4459703_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	1.5e-195	100.0
WP_001061444.1\|4459710_4460520_-	KilA-N domain-containing protein	A0A291AWU7	Escherichia_phage	1.8e-151	100.0
WP_000767113.1\|4460539_4460929_-	RusA family crossover junction endodeoxyribonuclease	A0A0P0ZD39	Stx2-converting_phage	7.1e-69	100.0
WP_000210141.1\|4460925_4461252_-	LexA family transcriptional regulator	A0A291AWY9	Escherichia_phage	3.9e-52	97.2
WP_001303054.1\|4461248_4461902_-	phage N-6-adenine-methyltransferase	A5LH72	Enterobacteria_phage	2.1e-126	99.1
WP_072141203.1\|4461901_4462396_-	PerC family transcriptional regulator	A0A0P0ZCF0	Stx2-converting_phage	1.6e-86	98.1
WP_000104949.1\|4462392_4463334_-	helix-turn-helix domain-containing protein	S5FM81	Shigella_phage	3.3e-144	99.7
WP_001250269.1\|4463323_4463503_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	7.8e-15	68.5
WP_000515845.1\|4463678_4464230_-	protein YmfL	S5FXP0	Shigella_phage	3.4e-101	99.5
WP_001191674.1\|4464222_4464483_-	helix-turn-helix transcriptional regulator	S5FKP1	Shigella_phage	7.1e-41	100.0
WP_001020634.1\|4464580_4465273_+	helix-turn-helix transcriptional regulator	S5FUZ3	Shigella_phage	1.0e-126	100.0
WP_000917896.1\|4465550_4465847_+	hypothetical protein	Q8SBF7	Shigella_phage	1.2e-52	100.0
WP_000008235.1\|4466523_4467060_+	5'-deoxynucleotidase	S5MW55	Escherichia_phage	8.2e-100	98.9
WP_001242749.1\|4467050_4467413_+	phage protein	U5P092	Shigella_phage	2.1e-67	100.0
WP_000206732.1\|4467412_4467718_+	hypothetical protein	U5P0J0	Shigella_phage	6.8e-51	100.0
WP_000051887.1\|4467944_4469108_+\|integrase	site-specific integrase	U5P434	Shigella_phage	2.4e-229	100.0
WP_000893282.1\|4469312_4470566_-	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	3.4e-96	47.2
4469122:4469168	attR	NA	NA	NA	NA
WP_001285288.1\|4470577_4471681_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.1e-61	40.4
WP_000749881.1\|4471968_4473024_+	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	7.7e-118	60.9

DBSCAN-SWA_16

4905047 : 4917623

Enterobacteria_phage(81.82%)

integrase

attL 4904081:4904096|attR 4922576:4922591

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4904081:4904096	attL	NA	NA	NA	NA
WP_001301682.1\|4905047_4905875_-\|integrase	integrase arm-type DNA-binding domain-containing protein	Q7M297	Enterobacteria_phage	4.3e-55	40.4
WP_044815386.1\|4906092_4906287_-	hypothetical protein	Q38404	Enterobacteria_phage	1.5e-24	100.0
WP_000783684.1\|4906642_4908976_-	toprim domain-containing protein	Q7M2A8	Enterobacteria_phage	0.0e+00	99.1
WP_000856729.1\|4908990_4909311_-	DUF5375 domain-containing protein	NA	NA	NA	NA
WP_000459287.1\|4909446_4909902_-	hypothetical protein	Q7M298	Enterobacteria_phage	4.7e-64	98.2
WP_001244670.1\|4909894_4910182_-	hypothetical protein	Q7M2A0	Enterobacteria_phage	2.5e-47	96.8
WP_000980224.1\|4910174_4910765_-	host cell division inhibitor Icd-like protein	Q7M2A7	Enterobacteria_phage	5.3e-60	90.3
WP_001149160.1\|4910761_4911028_-	AlpA family transcriptional regulator	Q7M299	Enterobacteria_phage	4.9e-45	100.0
WP_001283021.1\|4911579_4912314_+	hypothetical protein	Q7M2A2	Enterobacteria_phage	2.3e-129	98.8
WP_000638634.1\|4912310_4912811_+	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_000446132.1\|4912884_4913457_+	Polarity suppression protein	Q7M2A1	Enterobacteria_phage	2.2e-95	97.3
WP_000095622.1\|4913782_4915027_+	DNA cytosine methyltransferase	F2Y148	Organic_Lake_phycodnavirus	9.3e-46	31.1
WP_001453880.1\|4915064_4915799_-	type II restriction endonuclease	NA	NA	NA	NA
WP_000936844.1\|4915875_4916181_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000772662.1\|4916348_4917623_-\|integrase	integrase arm-type DNA-binding domain-containing protein	B7SYF8	Stenotrophomonas_phage	4.1e-73	41.0
4922576:4922591	attR	NA	NA	NA	NA

DBSCAN-SWA_17

4949989 : 5009017

Klosneuvirus(11.11%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_001162171.1\|4949989_4951342_-\|protease	metalloprotease PmbA	NA	NA	NA	NA
WP_000166270.1\|4951435_4951987_+	ribosome-associated protein	NA	NA	NA	NA
WP_001219792.1\|4952142_4953516_-	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase	NA	NA	NA	NA
WP_000853749.1\|4953691_4954690_+	class 1 fructose-bisphosphatase	A0A1V0SKX4	Klosneuvirus	2.1e-69	42.6
WP_000596020.1\|4954722_4955718_-	sugar ABC transporter permease YjfF	NA	NA	NA	NA
WP_001301928.1\|4955704_4956727_-	ABC transporter permease	NA	NA	NA	NA
WP_000205805.1\|4956740_4958243_-	sugar ABC transporter ATP-binding protein	F2Y2R6	Organic_Lake_phycodnavirus	1.8e-11	30.3
WP_000265942.1\|4958382_4959339_-	galactofuranose ABC transporter substrate-binding protein YtfQ	NA	NA	NA	NA
WP_000055075.1\|4959648_4960179_+	inorganic diphosphatase	A0A2H4J8U1	uncultured_Caudovirales_phage	1.2e-55	63.3
WP_000239579.1\|4960258_4960609_-	endoribonuclease toxin ChpB	NA	NA	NA	NA
WP_001223210.1\|4960602_4960854_-	type II toxin-antitoxin system antitoxin ChpS	NA	NA	NA	NA
WP_001219160.1\|4961065_4961407_-	gamma-glutamylcyclotransferase	NA	NA	NA	NA
WP_000060930.1\|4961409_4965189_-	autotransporter assembly complex protein TamB	NA	NA	NA	NA
WP_001269327.1\|4965185_4966919_-	autotransporter assembly complex protein TamA	NA	NA	NA	NA
WP_001301936.1\|4967124_4967763_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA
WP_000935036.1\|4968085_4969429_+	HlyC/CorC family transporter	NA	NA	NA	NA
WP_000689228.1\|4969524_4969731_-	DUF1107 domain-containing protein	NA	NA	NA	NA
WP_000175296.1\|4970055_4970610_+	YtfJ family protein	NA	NA	NA	NA
WP_000937658.1\|4970672_4971611_-	hypothetical protein	NA	NA	NA	NA
WP_000886884.1\|4971822_4972563_-	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA
WP_000589488.1\|4972752_4974696_+	2',3'-cyclic-nucleotide 2'-phosphodiesterase	NA	NA	NA	NA
WP_001302935.1\|4974813_4975194_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_000560631.1\|4975282_4976143_+	NAD(P)H:quinone oxidoreductase	NA	NA	NA	NA
WP_001301505.1\|4976250_4977216_+	DMT family transporter	NA	NA	NA	NA
WP_000331454.1\|4977323_4977986_+	iron-sulfur cluster repair protein YtfE	NA	NA	NA	NA
WP_000228346.1\|4978030_4979443_-	D-serine/D-alanine/glycine transporter	NA	NA	NA	NA
WP_000211225.1\|4979751_4980372_-	FKBP-type peptidyl-prolyl cis-trans isomerase	NA	NA	NA	NA
WP_001119481.1\|4980589_4981228_+	cell division protein YtfB	NA	NA	NA	NA
WP_000826431.1\|4981362_4982571_-\|transposase	IS200/IS605 family element transposase accessory protein TnpB	A0A077SL42	Escherichia_phage	5.4e-208	93.0
WP_000604943.1\|4982578_4983010_+\|transposase	IS200/IS605-like element IS609 family transposase	A0A1S5RHE3	Helicobacter_phage	5.7e-43	59.9
WP_001301745.1\|4983632_4984427_+	DUF2686 family protein	NA	NA	NA	NA
WP_001196062.1\|4984497_4984947_-	50S ribosomal protein L9	NA	NA	NA	NA
WP_000135199.1\|4984988_4985216_-	30S ribosomal protein S18	NA	NA	NA	NA
WP_001296681.1\|4985220_4985535_-	primosomal replication protein N	NA	NA	NA	NA
WP_001216676.1\|4985541_4985937_-	30S ribosomal protein S6	NA	NA	NA	NA
WP_000492914.1\|4986263_4986539_+	DUF1471 domain-containing protein	NA	NA	NA	NA
WP_001170812.1\|4986667_4987354_-	L-ribulose-5-phosphate 4-epimerase UlaF	NA	NA	NA	NA
WP_000949511.1\|4987353_4988208_-	L-ribulose-5-phosphate 3-epimerase UlaE	NA	NA	NA	NA
WP_000056760.1\|4988217_4988868_-	3-keto-L-gulonate-6-phosphate decarboxylase UlaD	NA	NA	NA	NA
WP_000776517.1\|4988881_4989346_-	PTS ascorbate transporter subunit IIA	NA	NA	NA	NA
WP_000218362.1\|4989355_4989661_-	PTS ascorbate transporter subunit IIB	NA	NA	NA	NA
WP_001301921.1\|4989676_4991074_-	PTS ascorbate transporter subunit IIC	NA	NA	NA	NA
WP_000133631.1\|4992600_4993356_+	HTH-type transcriptional regulator UlaR	NA	NA	NA	NA
WP_000569696.1\|4993352_4994102_-	esterase	NA	NA	NA	NA
WP_000254636.1\|4994283_4994613_+	biofilm peroxide resistance protein BsmA	NA	NA	NA	NA
WP_000811566.1\|4994761_4995037_+\|protease	protease activator YjfN	NA	NA	NA	NA
WP_001301849.1\|4995153_4996779_-	isovaleryl-CoA dehydrogenase	NA	NA	NA	NA
WP_000943960.1\|4996862_4998026_-	glutathionylspermidine synthase family protein	B2ZXR7	Ralstonia_phage	8.3e-81	43.8
WP_000101670.1\|4998028_4998667_-	DUF1190 domain-containing protein	NA	NA	NA	NA
WP_000547760.1\|4998676_4999075_-	DUF350 domain-containing protein	NA	NA	NA	NA
WP_000012572.1\|4999092_4999752_-	YjfK family protein	NA	NA	NA	NA
WP_000511966.1\|4999802_5000501_-	PspA/IM30 family protein	NA	NA	NA	NA
WP_000220128.1\|5000519_5000921_-	DUF2170 family protein	NA	NA	NA	NA
WP_001293282.1\|5001047_5001779_-	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	NA	NA	NA	NA
WP_000076303.1\|5001959_5004401_-	ribonuclease R	Q0GXV6	Lactococcus_phage	2.4e-66	32.9
WP_001177639.1\|5004439_5004865_-	nitric oxide-sensing transcriptional repressor NsrR	NA	NA	NA	NA
WP_000527955.1\|5005069_5006368_-	adenylosuccinate synthase	W5S5V7	Pithovirus	2.2e-66	35.9
WP_001089295.1\|5006471_5006669_-	DUF2065 domain-containing protein	NA	NA	NA	NA
WP_001232412.1\|5006750_5007755_-\|protease	protease modulator HflC	NA	NA	NA	NA
WP_000312488.1\|5007757_5009017_-\|protease	FtsH protease activity modulator HflK	A0A1L2CVV0	Pectobacterium_phage	3.6e-05	25.5

DBSCAN-SWA_18

5145897 : 5160562

Enterobacteria_phage(43.75%)

integrase,tail,tRNA

attL 5141738:5141753|attR 5159267:5159282

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
5141738:5141753	attL	NA	NA	NA	NA
WP_000918366.1\|5145897_5147313_-	replicative DNA helicase	O80281	Escherichia_phage	8.3e-200	78.1
WP_000235522.1\|5147395_5148379_+	quinone oxidoreductase	NA	NA	NA	NA
WP_000891404.1\|5148544_5148787_-	envelope stress response protein PspG	NA	NA	NA	NA
WP_000543819.1\|5148920_5149958_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
WP_000332269.1\|5150046_5151144_+\|integrase	site-specific integrase	S5MDN5	Escherichia_phage	2.1e-211	99.5
WP_001217541.1\|5151205_5151454_+	DinI-like family protein	A5LH55	Enterobacteria_phage	3.1e-38	98.8
WP_001143816.1\|5151614_5152256_-	DUF1076 domain-containing protein	B6DZC0	Enterobacteria_phage	1.1e-106	99.1
WP_072140863.1\|5152337_5152967_-	DUF1076 domain-containing protein	B6DZB9	Enterobacteria_phage	1.4e-79	93.5
WP_001118000.1\|5153039_5153612_-	DUF1076 domain-containing protein	H6WZN1	Escherichia_phage	2.5e-46	53.2
WP_001023355.1\|5153723_5153993_-\|tail	phage tail fiber C-terminal domain-containing protein	A0A0P0ZEF0	Stx2-converting_phage	2.7e-43	96.6
WP_000268945.1\|5153994_5155308_-\|tail	prophage tail fiber N-terminal domain-containing protein	A0A0P0ZE15	Stx2-converting_phage	2.5e-81	98.2
WP_001230514.1\|5155372_5155972_-	Ail/Lom family outer membrane beta-barrel protein	A0A0P0ZE39	Stx2-converting_phage	5.7e-110	99.0
WP_000008211.1\|5157293_5157830_+	5'-deoxynucleotidase	U5P0T3	Shigella_phage	3.1e-99	98.3
WP_001242740.1\|5157820_5158171_+	hypothetical protein	A0A0P0ZBF8	Stx2-converting_phage	1.6e-56	94.8
WP_000145668.1\|5158167_5158452_+	hypothetical protein	I6S1S6	Salmonella_phage	1.3e-40	83.9
WP_000829415.1\|5158787_5158985_+	hypothetical protein	K7PH57	Enterobacteria_phage	7.5e-11	68.6
WP_001093918.1\|5159329_5159611_+	pyocin activator PrtN family protein	K7PGU0	Enterobacteria_phage	8.7e-45	98.9
5159267:5159282	attR	NA	NA	NA	NA
WP_000654815.1\|5159658_5159832_-	hypothetical protein	K7PJQ2	Enterobacteria_phage	4.4e-23	100.0
WP_000956557.1\|5160028_5160562_-	hypothetical protein	K7PKJ4	Enterobacteria_phage	1.1e-99	100.0

Anti-CRISPR protein detection

Acr_ID: NZ_CP040107.1|WP_000556583.1|1775174_1775309_-|hypothetical-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

NZ_CP040107.1|WP_000556583.1|1775174_1775309_-|hypothetical-protein

1775174_1775309_-

44 aa aa

HTH_MlrA-like

Identity	Hit_domain_coverage
0.8545454545454545	0.8088235294117647

1771049-1872000

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
NZ_CP040107_6	Orphan	6.2\|3195560\|25\|NZ_CP040107\|PILER-CR	3195560-3195584	25	1785196-1785172	0

1. spacer 6.2|3195560|25|NZ_CP040107|PILER-CR matches to NZ_CP040107 position: 1785196-1785172, mismatch: 0

tttacctctttcaggtaaactttat	CRISPR spacer
tttacctctttcaggtaaactttat	Protospacer
*************************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP040107

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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