CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
NZ_CP054580	Halomonas titanicae strain GPM3 chromosome, complete genome	3 crisprs	RT,csa3,DEDDh,DinG,cas3,WYL,cas1,cas3-cas2,cas8f,cas5f,cas7f,cas6f	1	1	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP054580_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP054580_1

512634-512802

Orphan

Consensus_repeat	Method
GTCATTGCGAGGAGCGCAGCGACGAGGCAATCTCGATCTGCGGTGGCAGGTAACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP054580_1

>merge|NZ_CP054580|1|512634-512802|CRISPRCasFinder
GTCATTGCGAGGAGCGCAGCGACGAGGCAATCTCGATCTGCGGTGGCAGGTAACCCCGAGATTGCTTCACTACGTTCGCAATGACAGGTGAAGGATTTCAATGATATCACCTACGTCATTGCGAGGAGCGCAGCGACGCGGCAATCTCGATCTGCGGTGGCAGGTAACC

>NZ_CP054580|1|1|512634-512802|CRISPRCasFinder
GTCATTGCGAGGAGCGCAGCGACGAGGCAATCTCGATCTGCGGTGGCAGGTAACC	CCGAGATTGCTTCACTACGTTCGCAATGACAGGTGAAGGATTTCAATGATATCACCTAC
GTCATTGCGAGGAGCGCAGCGACGCGGCAATCTCGATCTGCGGTGGCAGGTAACC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054580.1\|WP_089690625.1\|505940_506624_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054580.1\|WP_089690610.1\|504415_504739_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054580.1\|WP_022519973.1\|510833_512390_-\|cache-domain-containing-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP054580.1\|WP_022519602.1\|515550_516018_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225264
NZ_CP054580.1\|WP_089690614.1\|514654_515521_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293810
NZ_CP054580.1\|WP_089690608.1\|503806_504352_+\|phage-tail-protein	unknown	unknown	gnl\|CDD\|227020
NZ_CP054580.1\|WP_022519604.1\|512838_514455_-\|cache-domain-containing-protein	unknown	unknown	gnl\|CDD\|185001
NZ_CP054580.1\|WP_027959602.1\|506822_507827_+\|OmpA-family-protein	unknown	unknown	gnl\|CDD\|236356
NZ_CP054580.1\|WP_035538611.1\|505345_505876_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379995
NZ_CP054580.1\|WP_009288458.1\|509456_510677_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|237556
NZ_CP054580.1\|WP_022519757.1\|516588_517290_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|223816
NZ_CP054580.1\|WP_022519796.1\|520773_521067_-\|GIY-YIG-nuclease-family-protein	unknown	unknown	gnl\|CDD\|198395
NZ_CP054580.1\|WP_022519756.1\|517286_518606_+\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|182388
NZ_CP054580.1\|WP_022519729.1\|521481_522264_-\|thiol:disulfide-interchange-protein-DsbG	unknown	unknown	gnl\|CDD\|183262
NZ_CP054580.1\|WP_041157905.1\|508478_509396_+\|HAD-IIB-family-hydrolase	unknown	unknown	gnl\|CDD\|234684
NZ_CP054580.1\|WP_022519754.1\|519295_520312_+\|c-type-cytochrome	unknown	unknown	gnl\|CDD\|225797
NZ_CP054580.1\|WP_089690612.1\|504759_505332_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
NZ_CP054580.1\|WP_022519755.1\|518633_519299_+\|cytochrome-c4	unknown	unknown	gnl\|CDD\|225418
NZ_CP054580.1\|WP_174788070.1\|496713_502917_-\|DUF4347-domain-containing-protein	unknown	unknown	gnl\|CDD\|372982
NZ_CP054580.1\|WP_089690616.1\|516041_516461_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225264

Protein	Function_ID	Function_description	E-value
NZ_CP054580.1\|WP_089690608.1\|503806_504352_+\|phage-tail-protein	gnl\|CDD\|227020	COG4675, MdpB, Microcystin-dependent protein [Function unknown].	5.87729e-50
NZ_CP054580.1\|WP_027959602.1\|506822_507827_+\|OmpA-family-protein	gnl\|CDD\|236356	PRK08944, motB, flagellar motor protein MotB; Reviewed.	5.24744e-35
NZ_CP054580.1\|WP_041157905.1\|508478_509396_+\|HAD-IIB-family-hydrolase	gnl\|CDD\|234684	PRK00192, PRK00192, mannosyl-3-phosphoglycerate phosphatase; Reviewed.	1.22485e-99
NZ_CP054580.1\|WP_022519604.1\|512838_514455_-\|cache-domain-containing-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	2.1294e-84
NZ_CP054580.1\|WP_022519602.1\|515550_516018_+\|hypothetical-protein	gnl\|CDD\|225264	COG2391, COG2391, Predicted transporter component [General function prediction only].	9.92404e-06
NZ_CP054580.1\|WP_035538611.1\|505345_505876_-\|hypothetical-protein	gnl\|CDD\|379995	pfam17680, FlgO, FlgO protein. This entry represents the FlgO protein. Mutation of this protein in Vibrio cholerae has been shown to reduce motility. FlgO is an outer membrane protein that localizes throughout the membrane and not at the flagellar pole. Although FlgO and FlgP do not specifically localize to the flagellum, they are required for flagellar stability. Proteins in this family mostly contain an N-terminal lipoprotein attachment motif.	1.11007e-40
NZ_CP054580.1\|WP_022519973.1\|510833_512390_-\|cache-domain-containing-protein	gnl\|CDD\|185001	PRK15041, PRK15041, methyl-accepting chemotaxis protein.	1.01624e-82
NZ_CP054580.1\|WP_022519757.1\|516588_517290_+\|response-regulator-transcription-factor	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	5.98555e-74
NZ_CP054580.1\|WP_009288458.1\|509456_510677_+\|hypothetical-protein	gnl\|CDD\|237556	PRK13915, PRK13915, putative glucosyl-3-phosphoglycerate synthase; Provisional.	2.12036e-13
NZ_CP054580.1\|WP_022519756.1\|517286_518606_+\|two-component-sensor-histidine-kinase	gnl\|CDD\|182388	PRK10337, PRK10337, sensor protein QseC; Provisional.	8.1077e-55
NZ_CP054580.1\|WP_022519729.1\|521481_522264_-\|thiol:disulfide-interchange-protein-DsbG	gnl\|CDD\|183262	PRK11657, dsbG, disulfide isomerase/thiol-disulfide oxidase; Provisional.	2.89552e-111
NZ_CP054580.1\|WP_089690614.1\|514654_515521_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293810	cd07724, POD-like_MBL-fold, ETHE1 (PDO type I), persulfide dioxygenase A (PDOA, PDO type II) and related proteins; MBL-fold metallo-hydrolase domain. Persulfide dioxygenase (PDO, also known as sulfur dioxygenase, SDO, EC 1.13.11.18) is a non-heme iron-dependent oxygenase which catalyzes the oxidation of glutathione persulfide to glutathione and persulfite in the mitochondria. Mutations in ethe1 (the human PDO gene) are responsible for a rare autosomal recessive metabolic disorder called ethylmalonic encephalopathy. Arabidopsis thaliana ETHE1 is essential for embryo and endosperm development. Bacterial ETHE1-type PDOs are also called Type 1 PDOs. Type II PDOs (also called PDOAs), are mainly proteobacterial. These enzymes belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions.	5.23303e-73
NZ_CP054580.1\|WP_022519796.1\|520773_521067_-\|GIY-YIG-nuclease-family-protein	gnl\|CDD\|198395	cd10448, GIY-YIG_unchar_3, GIY-YIG domain of uncharacterized hypothetical protein found in bacteria. The family includes a group of uncharacterized bacterial proteins with a GIY-YIG domain that shows statistically significant similarity to the N-terminal catalytic domains of GIY-YIG family of intron-encoded homing endonuclease I-TevI and catalytic GIY-YIG domain of nucleotide excision repair endonuclease UvrC.	3.04443e-45
NZ_CP054580.1\|WP_022519754.1\|519295_520312_+\|c-type-cytochrome	gnl\|CDD\|225797	COG3258, COG3258, Cytochrome c [Energy production and conversion].	4.68946e-68
NZ_CP054580.1\|WP_089690612.1\|504759_505332_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	9.28146e-09
NZ_CP054580.1\|WP_022519755.1\|518633_519299_+\|cytochrome-c4	gnl\|CDD\|225418	COG2863, COG2863, Cytochrome c553 [Energy production and conversion].	5.56028e-25
NZ_CP054580.1\|WP_174788070.1\|496713_502917_-\|DUF4347-domain-containing-protein	gnl\|CDD\|372982	pfam14252, DUF4347, Domain of unknown function (DUF4347). This domain family is found in bacteria and eukaryotes, and is approximately 160 amino acids in length. There are two completely conserved residues (C and G) that may be functionally important.	3.68504e-70
NZ_CP054580.1\|WP_089690616.1\|516041_516461_+\|hypothetical-protein	gnl\|CDD\|225264	COG2391, COG2391, Predicted transporter component [General function prediction only].	4.90371e-05

>NZ_CP054580.1|WP_022519973.1|510833_512390_-|cache-domain-containing-protein
MLLLVGWLAWENRQTIESERRDSIQYVVESVQSQIEALQERVVAGELSLEEAQQRAIDNMSSVSFGGGEYIFSFDDDLKIVSHPKRPRGEDMSAYQDASGMDLYAAFREAAQAGGGHVDYYSRRITGDEQVPKISYVAYLPEWQWSLATGVYVDDINEAFITRLIYSVMVLLIIGLPVTLLMGWVIRDVARRLGGDPRYAASVVRHIADGDLTQTTQLSPKDQQSLLFDINRMRETLANTIGDIHHGANQVNSGVEQIVGVNEELSTRTEEQAASLAETASSMEQLTATVKQNAEHADHARTLATRTADSAQRGSDSMSTVISTMATINESATQMSSIVNTIDGIAFQTNILALNASVEAARAGEQGRGFAVVANEVRQLASRSAAAAQEIKTLIEASDSKVVEGSRQVHDTGDEINGMVDDIKQLSTLVQEISAATIEQSSGIEQVNQAVTQMDQMTQQNAGLVQESNHATQTLAQLSAQLRQLVAHFRINQSTGHAQANLPASSSAPRAALQHSDF
>NZ_CP054580.1|WP_009288458.1|509456_510677_+|hypothetical-protein
MSDFHQNGIITDFHNLTRRSVEALEQELCQFARRRPMGLILPSLFSELEGPALSAIVDELVKVPYLNEIVIGLDRADREQFLYAREFFSRLPQHTRILWNDGPRLRALDAELEEHGLGALEPGKGRNVWYCAGYMLSSGRSTVVGLHDCDILTYERGLLARLMYPVAHPNFNYSFCKGYYPRIAEGKLNGRVSRLLVTPLLRALKTVCGPMPYLDYLDSFRYPLSGEFAMRSEVLEGIRMPADWGLEIGVLSELQRNYSLRQLCQVDIADAYDHKHQPVSEDDPDSGLNRMSLDISKALYRKLATQGVTFSSEDFRTLKATYYRFALDLIEAYDHDATMNGLSLDRHSEEQAVELFASNLLEAGNLFMDNPRERPFIPSWNRVQAAVPDLLTRMHEAVELDNQGKV
>NZ_CP054580.1|WP_041157905.1|508478_509396_+|HAD-IIB-family-hydrolase
MPEPARLSASTPSVDPALQPRLVLTDLDGSLLDHHSYDFSPAAPWLARLKQMGVPVVPVTSKTRAELIPLREALGLTATPFIAENGAVIGLPPGWCHARLDRPGSGRDGVVIKHPGVDIGFIRARLKVWRERLDIRFTRMGEMSVAEVMELTGLDAVRARDARQREGSEPLLWEDSAVALETFRAALEGDGLQLTQGGRFWHVMGRSADKGNAVEWLVKRFTALRGRMPLSLGLGDGPNDITMLEAVDQAVVIRGCHDLAVEPRNASLYRTDATGPTGWSEGVAYWWGRDDRRLATAEKGDAAVL
>NZ_CP054580.1|WP_027959602.1|506822_507827_+|OmpA-family-protein
MLEDHRGGPRHDSLMSAYHESDSGSGWMISYLDIMTLLVALFVVIIAAAGPVIPQLNQKDSVSEDAGTSSPTLGVPLPEALAQVSHERESVARWSSAGLNPMAISAALGVAGLPKLADLPRRVSFGVPPLLAAPLPPAEPVISLPKLLMPAGSDDFTSPLADYMVVLTDHPPANVQAVSDESVAGATALNQALSERVEESTYLPDLEGVEVSRVAEGISLRVQDQLLFPSATAELTNDGSSLVSSLLETIQRYDGEVWVEGHSDSQTISTEEFSSNWALSSARAIAIVEALEAAGVDAERLRAVGLAATKPLESNATAEGRARNRRVEVVIHVE
>NZ_CP054580.1|WP_089690625.1|505940_506624_-|hypothetical-protein
MGLASLMLSGCFYANTSQAPIATTYPYTEQQRMQAAHHWDVLARHEATSILQRERVRNRDLHISESDSEALHAYSGGEFGRGFRALLTSELVSRGANLTTVPTANSANITIDVEVVEHRDRGFIRPPVGAFTALTAGIAVATIPFNQWSEPALGLIPAGMLADTTSGSWTYTGDEEIIVTTQIIDGERILYSSSNIYYINAGDRRQYAPHRVPQAPTTPSVSLTDTW
>NZ_CP054580.1|WP_035538611.1|505345_505876_-|hypothetical-protein
MTMGITLLLLAGCSALGNANNTPAEPEPDLSELVHAAAEQMVASNPELTRYSPMIAATFVSIDNLSQSSTLGRISSEIMASALARQGMQVREVKMRDSMFIEESVGELILSRQVQRLTAQHNARSILMGTYAQGQDYVYVSARVVRAGDAMVLGSADFRLPLNNNTRSLLEGQGGW
>NZ_CP054580.1|WP_089690612.1|504759_505332_-|GNAT-family-N-acetyltransferase
MASSRLSCSGGQFNQLISLGNGKRMAGIGGHLNDGLQLRPSRDSDNLFLEALYRDIRQDLQLALADQDMIEALLEMQVKAQAIGYGTAYPNALYYIVEKQGERIGRVTVDFGANEVHILDLALIKGARNKGYGAVVLRAVQAAGAQVMSPVSLSVDPFNVYAKQLYQQLGFRFERLMGAVERWVWYPQTP
>NZ_CP054580.1|WP_089690610.1|504415_504739_+|hypothetical-protein
MLGTITAADFQPLQGQVCIFETVNPTLSVRLTVEQVTSRPDCQVPGAGEGREPFGVLLSGQQAEVDFTSATGVLRLGDGATLEGVYINRVLPPMGGDPRPWYQLVFN
>NZ_CP054580.1|WP_089690608.1|503806_504352_+|phage-tail-protein
MDPFLGEIKMLGFPWAPVGWGLCSGTQLSIAQYQALFSLLGAVYGGNGQTTFNLPDLRGRMPRGQGQGAGMPNATIGEQAGAENRTLTINQMPQHTHAAGAMTTPDAANEDTPATGDYLASGKVNLNDPVRNYYRGTPSGTVELGNGQTGITGGSQPFNVMNPYLALNFSIALQGIYPSRQ
>NZ_CP054580.1|WP_174788070.1|496713_502917_-|DUF4347-domain-containing-protein
MNTPTRQTSPSQSTGRNEVIFVDPRVEDYQTLLNGVADDTEVILLDPSANGVEQIAQALAQRGEFDAIHLVSHGSEGRIALGNSTLDSETLPSYASFLEQWGEALGPNGDILIYGCDVGADEQGLRFVEALARVTGADVAASDDLTGANSLGGNWVLEQQYGQVETSSLIGIEQQSTWQGLLAAESVFDWDSGNAIDNGLTVSEQVNGVTLTISASNGADLGLQNVGSMYNLEGFAAYVETNYSTAGTTYTFTFDQVVDMGTIELLTTSGETQATFSASGHTDIPSGPIANLNDASVVDLSSFTGIISFTMAPVDPEQFYFDDISFTSANNSPVFTTINDGNIDETAISGTVVLADSDIEANDGDGGGIDSVTYSIVGGTGEDYFDINATNGKVTLNAAGEAALDFENTQSYTLTLSANDGNSSTDETVTIAVNDIAPVITAGQSFSINESDTNSTSLGTVATTGDNNSVSYSIESGNTGNAFTIDDSTGEITLSDTSQLDASATGSYTLSIQATDDNTASTQDVTINVTDDVAPSVTSIAPSGSPDANAASVDFTVTFSESVNNVDAGDFTLTSTGTASGTISAVAGSGDSYTVSVTGISGEGDLRLDLNSGTDIDDGATNAPAGYTSGTAHSVDLVKPSVTNVTSLTADGTYNAGDTVDITLTFSEVVTVTGTPQLTLETGATDRVIDYTAGSGTNTLTFAYTVQAGDETSDLALAGSEILLSGGTLQDAEGNNAVVTLPTPGTAGSLSANKDIVIDAIAPSVTSIAPSGSPAANASSVDYTVTFSEDVDDVSIDDFLLNTTGSASGNIASISGSGSSYTVTVDTITGEGDLRLDLNDGTDINDGAGNASEGFSSGTAHTVDVVNPSVTHITSTNADGTYKAGDTVNITLAFSEAVTVSGTPQLTLETGATDRTIEYVAGSGTDELTFAYTVQAGDESSDLALTNAGIILNGGSIRDAAGNDSELTLPTPGTAHSLSANKDIVIDAVAPVITSVSIPNSSHKIGDTVTVAITAGEAGLSLDAGTVNGVTVTGFTDQGGGNYTATYTVQEGDTSRAPGDDIPVNFVLSDAAGNSSSTYTTAISQSANVIDAARPTLDGAIVPSLTTITDDQIGSSRFTLTLNFNEAMDTGVAPTITFPTEDPTNTLTFNAGSWTDAKTYIATFDTADANEVINNVDVRVSDAQDAAGNTLAAVTQNDLFSVVTATSPAIQAITSPTADGTFAVGSSIDITVTFDKAVDFTANGGALTATLNTGATILLTNSDAANQTQFSGRYTVQEGETDTDGLNVASLTLTGGATLVAHDNGVAADLGTLPGSQNLADSAELVVDANSPAATPAPTLAADSDSGVSDNDNITNNNTPTLIGTGAEAGATVMVRVDGISVGSATANGSGDWAFTLAEGDLSEGLNTIDTLVGDSAGNTSSASAGLALTLDNTAPTANDDTTATVREDAGEALLTNVNGAGDKLTDNDTGADDTAPITAVNDRADALSSAVAGSNGGRFIIEADGTASFDPNGEFEALAHGDTLTTDVTVDIQDTAGNTSTSTLSVTVEGVNNAPTIATNAGPSVKAGRSVTLTTANLNEGDPDDAGDELTYTLNTLPTSGTLLLDGTALAAGETFTQQDIDNGLVTFTAGSSAGNASFDFTLADGGEDGVERVSGTVTFTVEAAPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPIELANFVDIFTEKGWELPSELLEQLRNTATFVRYPEFDTVLTPIIRLYNGILDRVAEREGLEYWVAQQNAEGSFNDIVQDFMLAEEVSTALQAMGSDNATFVDTLYQAALGRAADESGRDYWVDILESNNGDRSEVARWFVQSQEYINANPPLVNGNKLLAWGVNLEQMEMRSLGFDTGVTADQDDLAETLVRLYTGLAGESPNEATFNEWLESGQTPEALAASLLESEDLLTTGEPIDFEILIDTLYERVLNRSPDTAGEQYWQEVLQNGDASLTEMVMAFTDSNEHQQLSRSEVDNYLDAANLVGVETDLESYLFG
>NZ_CP054580.1|WP_022519604.1|512838_514455_-|cache-domain-containing-protein
MTHLTTTQKLWGTLGIIWVAMLLLVGWLAWENRQTIESERRDSIQYVVESVQNQIEALQERVASGELSLEEAQQRAIDNMSSVSFGAGEYIFSFNDDLLIISHPSRTPGTDMTNYEDASGMALYPELLRVAQAGGGHVNYYSTRAGGDEQLPKTSYVAHLPEWDWSLATGVYVDDINAAFIAGLIRSIVILLIIGLPVTLLMGWVIRDVSRRLGGDPRYAANVVRHIADGDLTQVTRLSPKDQQSLLFNINRMREALAETIGDIHHGASQVNSGVEQIVGVNEELSTRTEEQAASLAETASSMEQLTATVKQNAEHADHARKLATRAADSAQRGSDSMSSVTTTMATINESATQMSSIVNTIDGIAFQTNILALNASVEAARAGDQGRGFAVVANEVRQLASRSAAAAQEIKTLIEASDSKVVEGSRQVRDTGDVINSMVDDIKQLSTLVQEISAATIEQSSGIEQVNQAVTQMDQMTQQNASLVQESTHATQALAQLSAQLRQLVAHFRIHQSTEHTQASLPASSPAPQTAHQHSDF
>NZ_CP054580.1|WP_089690614.1|514654_515521_+|MBL-fold-metallo-hydrolase
MQRPIVTHFFDEPTNTFSYVVQDPDRRACAIIDSVLDFDYAAGRTDVRSANTIIAFIREHDLDVVWILETHVHADHLSAAPYLREQLGGKTGIGANIVKVQEIFGKAFNAGSEFARDGSQFDALFEEGDTFTVGQLQGRVLHTPGHTPACLTYVVGDAAFVGDTLFMPDYGTARCDFPGGDARTLYHSIQKVLALPEQTRLFLCHDYKAPGRDTFQHETSVAEQRSENVHVHEGISEDEFVKMRTERDATLGMPRLIIPSVQVNMRAGELPPAEENGTVYLKVPLNFF
>NZ_CP054580.1|WP_022519602.1|515550_516018_+|hypothetical-protein
MDWTAGLQGLVGGVLIGLSATWLMATLGRIAGISGIVGNLITQRPKGDSAWRVAFLLGLISGPLLLMALGGSLGNVAESPGEVIGAPVGGVGLMLVAGLLVGVGTGLGSGCTSGHGVCGLARLAPRSMAATGMFLLTALVTVYISRHMLGLGGGV
>NZ_CP054580.1|WP_089690616.1|516041_516461_+|hypothetical-protein
MKTAAGYAAGLLFGIGLAVSGMTDPARVVGFLDVAGAWDPTLMFVLGGAVVTTFIGYRLVFKRTAPLLGGVFQLPAKRELDAKLLGGAALFGIGWGLSGYCPGPAIASIGGLSLPLLAMLVTMVLGWFFARRFAAKRLA
>NZ_CP054580.1|WP_022519757.1|516588_517290_+|response-regulator-transcription-factor
MHVLLIEDDPLVASGIRAGLMTFDFVVDHVSTGTAARQAMRTVASDVVILDRGLPDGDGLQLLAEWREQGNDVPVLVLTARDAVRDRVDGLQGGADDYLVKPFDLDELVARLHALLRRVAGRSSGLIAHGALCLDPTAREVYVDEQLIMLSRRELVLLETFLQSPRSVLSADQLKDSLYGMNDDVESNALNVHIHHLRRKLGSGVIETVRGLGYRLGKPEAVHVAGTPYKGQL
>NZ_CP054580.1|WP_022519756.1|517286_518606_+|two-component-sensor-histidine-kinase
MSLRARLLLTLGLTLALLWGVAAAWLMRDLEEKFVETLDQRLAQSARMVAGLVLQLPFDVWEDAEHPVLSIPPIEGLACQVHSPQGEIMARTHADMDAILAPGEGGHTYRQAGDVTWRVFTYERGGIVITTADRMDERDMLLGGVIRMTVVPFIVALVGSMFALWLGVWRGLAPLTRLRESLANRHPDALAPVATYGLPKEIRPLIETLNALLARVQQTIIREQRFTNDAAHELRTPLTAIKTHLQVARRVEGPAAITSLNYAEEGVVRLSSTLDQLLTLARVEGRVRFDDGEASRVADVAEHALADSQHNKSARFVVSPHWPDVALAMPRELAITALRNLLNNAINHGPADAPVNFDAQWEPGERHLTFSVSDQGPGVDGATLEQLTQRFWRASKQQGSGLGLAIVAAIAERFGGEVTFVSPAGGGFTARLVVPVAGS
>NZ_CP054580.1|WP_022519755.1|518633_519299_+|cytochrome-c4
MNKKYLSRFGLLIGISLVTGGALAQQGDAERGQAAAATCTACHQADGSGMNVPNGESWPRLAGLNADYIAKQLHDFKAGQRQNATMMTFANMLDDQQIADVAEYYSQMPVTPGQGGDEADEALLARGQQLAERGDWNAYIVSCQSCHGPGGTGVGSTFPGVASQHAGYISAQLRAWKNETRINDPQNLMGAIAKRMSDNDIQAVSAWYAMQPGSEEQETAQ
>NZ_CP054580.1|WP_022519754.1|519295_520312_+|c-type-cytochrome
MTICRRSLVITLTGCSLAFGTVYTATVFAQPEERPDAALNMLVHEPPTMEDLENSELHPELKKVIRYGHDLFTNTQQLRGENVFNDMNCSSCHLGEGRVPFSAPVWAAAITLPDFRGKNQHVNNLEERIAGCFAYSMNGAPPEYGSDEMLALSAYHQWLATGAPMYPDKPIYGRGFPAPDEPAEEPDYARGEAAYQENCSICHQKDGSGHYENGEYVFPAPWGDGSNNWGAGIARVETMAGFIYQNMPLGQPRSLSDQDAWDIAYYINSQERPQDPRYTGDVAETAERFGPTFHNRSLYGQTREHDGHVLGDHDNFGEKGDLKPWNVGMPRFENLSEE
>NZ_CP054580.1|WP_022519796.1|520773_521067_-|GIY-YIG-nuclease-family-protein
MSTTNNLYYVYMLTNRTHRVLYIGVTNNLERRLYEHRQGLMPGFTKKYRCHKLVWLEESNSIEDAIRREKQLKAGSRQRKNALIDSLNPDWVELAPY
>NZ_CP054580.1|WP_022519729.1|521481_522264_-|thiol:disulfide-interchange-protein-DsbG
MHLKRHAGISGFLLLAGLVGTSASYADELPAPIQALADQGLEIHGQFDAPGGLRGYGASVQGQDMAIYLTPDGEHAVVGTLMDNEGNDLTEAQLDEHVRAPLEAQTWQLLSESHWVQDGNVDAPRVIYTFTDANCPYCRQMWQDVRPWVEAGEVQLRHIMVGILAPDSPGKAAAILGADDPAATLHAHESGQQEIEASAQPREIEEQVYANNQLFEELGLYATPTSVFQRETENGAVRLDRIQGMPSDERLIEMMGSETP

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Crispr_ID: NZ_CP054580_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP054580_3

4618422-4618509

TypeI-F

Consensus_repeat	Method
CGCTGCCGCCCAGGCAGCTCAGAAA	CRISPRCasFinder

1 spacers

cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1

The CRISPR arrays of NZ_CP054580_3

>merge|NZ_CP054580|3|4618422-4618509|CRISPRCasFinder
TGTTACCGTTCAGATAGCTCGGAAAAGTGTGGGAGTTCGAGTCTCCCCATCCCATCCGCAGTTCGCTGCCGCCCAGGCAGTAATGAAG

>NZ_CP054580|3|3|4618422-4618509|CRISPRCasFinder
TGTTACCGTTCAGATAGCTCGGAAA	AGTGTGGGAGTTCGAGTCTCCCCATCCCATCCGCAGTT
CGCTGCCGCCCAGGCAGTAATGAAG

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054580.1\|WP_022520842.1\|4614074_4615457_+\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	pfam09611_cas8f_CAS-I-F	gnl\|CDD\|378220
NZ_CP054580.1\|WP_022520808.1\|4618720_4619026_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054580.1\|WP_022520845.1\|4608501_4609173_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054580.1\|WP_053856917.1\|4628249_4628375_-\|entericidin-A/B-family-lipoprotein	unknown	unknown	gnl\|CDD\|227797
NZ_CP054580.1\|WP_022520841.1\|4615449_4616418_+\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	cd09736_cas5f_CAS-I-F	gnl\|CDD\|378221
NZ_CP054580.1\|WP_022520839.1\|4617462_4618032_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|378224
NZ_CP054580.1\|WP_022520846.1\|4608196_4608346_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054580.1\|WP_022520807.1\|4619092_4620031_-\|esterase-family-protein	unknown	unknown	gnl\|CDD\|225256
NZ_CP054580.1\|WP_022520802.1\|4625700_4627128_+\|nitrogen-regulation-protein-NR(I)	unknown	unknown	gnl\|CDD\|273818
NZ_CP054580.1\|WP_022520848.1\|4606600_4607491_-\|metal-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224033
NZ_CP054580.1\|WP_053857147.1\|4609331_4610306_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|187849
NZ_CP054580.1\|WP_027958155.1\|4624645_4625704_+\|nitrogen-regulation-protein-NR(II)	unknown	unknown	gnl\|CDD\|226370
NZ_CP054580.1\|WP_022520806.1\|4620183_4621212_+\|acyltransferase-family-protein	unknown	unknown	gnl\|CDD\|226446
NZ_CP054580.1\|WP_022520804.1\|4622430_4623837_+\|glutamate--ammonia-ligase	unknown	unknown	gnl\|CDD\|181884
NZ_CP054580.1\|WP_022520840.1\|4616433_4617459_+\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222
NZ_CP054580.1\|WP_027958156.1\|4627716_4628244_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225496
NZ_CP054580.1\|WP_022520847.1\|4607474_4608200_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213202
NZ_CP054580.1\|WP_007111925.1\|4627454_4627628_-\|Lacal_2735-family-protein	unknown	unknown	unknown
NZ_CP054580.1\|WP_022520843.1\|4610302_4613647_+\|type-I-F-CRISPR-associated-helicase-Cas3	cas3-cas2	cas3-cas2-CAS-I-F	gnl\|CDD\|274201
NZ_CP054580.1\|WP_022520805.1\|4621273_4621897_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP054580.1\|WP_022520842.1\|4614074_4615457_+\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|378220	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.	1.25413e-178
NZ_CP054580.1\|WP_053856917.1\|4628249_4628375_-\|entericidin-A/B-family-lipoprotein	gnl\|CDD\|227797	COG5510, COG5510, Predicted small secreted protein [Function unknown].	1.60926e-08
NZ_CP054580.1\|WP_022520839.1\|4617462_4618032_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|378224	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	1.40765e-82
NZ_CP054580.1\|WP_022520848.1\|4606600_4607491_-\|metal-ABC-transporter-permease	gnl\|CDD\|224033	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism].	6.1611e-55
NZ_CP054580.1\|WP_022520807.1\|4619092_4620031_-\|esterase-family-protein	gnl\|CDD\|225256	COG2382, Fes, Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism].	1.87782e-26
NZ_CP054580.1\|WP_022520802.1\|4625700_4627128_+\|nitrogen-regulation-protein-NR(I)	gnl\|CDD\|273818	TIGR01818, Nitrogen_assimilation_regulatory_protein, nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems].	0
NZ_CP054580.1\|WP_053857147.1\|4609331_4610306_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187849	cd09718, Cas1_I-F, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	0
NZ_CP054580.1\|WP_022520806.1\|4620183_4621212_+\|acyltransferase-family-protein	gnl\|CDD\|226446	COG3936, COG3936, Protein involved in polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation [Carbohydrate transport and metabolism].	2.13674e-12
NZ_CP054580.1\|WP_022520841.1\|4615449_4616418_+\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	1.37119e-161
NZ_CP054580.1\|WP_022520840.1\|4616433_4617459_+\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NZ_CP054580.1\|WP_022520804.1\|4622430_4623837_+\|glutamate--ammonia-ligase	gnl\|CDD\|181884	PRK09469, glnA, glutamate--ammonia ligase.	0
NZ_CP054580.1\|WP_027958156.1\|4627716_4628244_-\|alpha/beta-hydrolase	gnl\|CDD\|225496	COG2945, COG2945, Predicted hydrolase of the alpha/beta superfamily [General function prediction only].	6.10288e-08
NZ_CP054580.1\|WP_022520847.1\|4607474_4608200_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213202	cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.	1.4523e-76
NZ_CP054580.1\|WP_022520843.1\|4610302_4613647_+\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0
NZ_CP054580.1\|WP_027958155.1\|4624645_4625704_+\|nitrogen-regulation-protein-NR(II)	gnl\|CDD\|226370	COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms].	2.02928e-132

>NZ_CP054580.1|WP_022520839.1|4617462_4618032_+|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDHYIDIRLRPDPDFAPAMLMGALYNKLHRALFDLQATDLGVSFPGHKRGVRARTLGDHLRLHGTQARLGQLMGADWLTGMRDHTQVSEVLAVPANSQHFNVARKQFNTGSPSRAKRYAKRHDISEDEAQQIYAKLAARRIELPFVQINSRSTQQRFSLFIEHGKPQEKPVAGSFNHYGLSPDATVPWF
>NZ_CP054580.1|WP_022520840.1|4616433_4617459_+|type-I-F-CRISPR-associated-protein-Csy3
MAKNDTLKTASVLAFERKLDPSDALLYASNWDKRQDEQQWQPVVVREKSVRGTISNRLKAKDQDPAKLDAQIENPNLQTVDVATLPHDADTLVARFTLRVLAGAGTPSACNNAEYQAKLEQAVAAYKQAQGFGELAQRYANNLANGRFLWRNRMGAEQVEVSIRQLAQGKATKEWNFDALSLSLRAFEDTAELKELASVIAAALAGEQHLLLEVVAYVRMGSGQEVFPSQELILDRGRGDKSKTLYHVSDIAGIHSQKLGNAIRTIDTWYPNENDDDLGPIAVEPYGSVTTQGKAYRQPKQKADFYSLLDNWMIKDQVPTKEDQHFVMATLIRGGVFGEAG
>NZ_CP054580.1|WP_022520841.1|4615449_4616418_+|type-I-F-CRISPR-associated-protein-Csy2
MSEVKNLLVLPRLRVQNANAISSPMTWGFPAMSAFVGLMHALERKLAEASLPVSLGRVGVICHDFEAQATEGGYIRGFHLTRNPVDKTGGTAAIVEEGRIHLDITLIFAIDTGTAESEHEDIAHQISETVSGMRIAGGSVVPNRNVPSHKQRPQWVMLDDNEDERYKQFARLKRRWLPGFALTLRDDYLTEHLTTLQKHNPEASLLDAWLDLSRLNHVCTLENEGEPNEKPVWQAQRPYRGWLVPIPVGYGAISDLFQPGEVANARDTMTQFRFVESLYSIGEWVSPHRMKQPEDLLWYVDNDEEAGLYRLNNDYHLRASAQ
>NZ_CP054580.1|WP_022520842.1|4614074_4615457_+|type-I-F-CRISPR-associated-protein-Csy1
MPTIPSGSWQQLRALIEVFLKERFDTKAEKLAPDDPKYQALVEQFQFDTWVNDAARRVGQLQVVTHSLKPIHPDAKGSNLYAPPESLHAHNLVGSHVLPADFAGDVVGNAAALDVYKFLKLQFEGKSLLERALENDSEFAKALSDNPEQAQAWINAFAAITEPRGEHASHTRGKQLYWLVGDDAAELENDADNFRLLAPLYATSLAHRVFQTINHDRFSEEAKDSRKAKREGKYAEQPVHSYPNLAVQKMGGTKPQNISQLNSERGGNNYLLASLPPSWNVSDIRPPLKVASVFSHPGVFGSRSEVRSLVKDFKRFLETDPSTDMHTRDLRDDYTAMLMDELALFAMQMHSLPAGWSDDEKCELVAEEAFWLDPGRAEEDVPFREARNSVEWAEEIRHRFANWLNAALGEKLPLGDVEFRHWQKTLAKDATHQRLQDRDRRWMESLMEDLHNLPGGDDDE
>NZ_CP054580.1|WP_022520843.1|4610302_4613647_+|type-I-F-CRISPR-associated-helicase-Cas3
MNVLLISQCNKNALKETRRILDQFAERRGDRTWQTPITQAGLDTLRKLLRKKARKNTAVACHWIRGHDHSELVWVVGDASRFNIQGAVPTNITARDILRSRDENDWHNGEDILLLTALAALLHDLGKACDAFQQRLKGKVEGRNLYRHEWISLRLFQAFIGSDDDATWLARLAEGDYQTQDWLGGLERDGIDAPTSAVFSRLPPLAAALGWLVLSHHRLPLKPPEKVGENERRWGRGNAPLQAEQLGGLFASIHAEWNEIPETQDSKRIAPYWQFKAGLPVSTPRWRDRAKKLATRLQARLQNGEHWLESRYVMHLARLSLMLADHHYSSLEDLQHRVRGEPNYPLIANTVRKTGKPNQLLDEHILGVEKHAAAVARALPSVDSHLPRLARHKGFRKRSSHPRFRWQDKAFDLAQSLRERSQRQGFFGINMASTGCGKTLANGRIMYALADPQQGARFSIALGLRTLTLQTGQALRDRLHLGEDELAVRVGGSANQALFEHYEQEAEASGSASNQALIEEDAHVVFDGNFDSHPVLRRLSDEPGTRALIAAPILVCTVDHLVPATESTRGGRQIVPMLRLMSSDLVLDEVDDFDINDLPALTRLVNWAGLLGSRVLLSSATLPPALVEGLYEAYRSGREAFQRHRGEPGLATDICCAWFDEHDRQHHNCASSETFQAAHNAFAKRRLERLAKSPVRRRADILTLPSLGKRPEEIRPAIATLLRTHAQTLHEQHHTLDPCTGKRVSFGLIRMANIDPLVDVARALFQQGASEGVRLHLCVYHSRHPLVMRSEIERRLDKTLQRAEPDRVFQQPDIRRLMDSSEENDHLFIVLGSPVTEVGRDHDYDWAIVEPSSMRSIIQLAGRVRRHREQACEVANILLLETNLKHLERGDEPAFHKPGFETKMAWRLNSHSLNTLLTPDEYQVIDARPRVLARETLHAKDSLVDLEHERLHQLMIEQPAEPLTKKELRIGKTPKPPPLGAYSWHGMPQLHLTGVLIQRDPFRKQLEPEITLALLPDEGGETWTLHRVDDGARRGEKLYVPVEESLLVRVNLAKEQGERIQPWGASDYLTALADLAEDLDISLDRAARTFGTVTASARNQRWGYHPVLGFWRSK
>NZ_CP054580.1|WP_053857147.1|4609331_4610306_+|type-I-F-CRISPR-associated-endonuclease-Cas1
MDDFSPSDLKTILHSKRANLYYLQHCRVLVNGGRVEYVTDEGSKSRYWNIPIANTTSILLGTGTSITQAAMRELAKAGVLVGFCGGGGTPLFAANEVDVDVAWLTPQSEYRPTEYLQYWVRFWFDDVKRLDAARAFQQARLARIESLWTSRVMKDAGFSISTDHLHSALNHHREAINKAPSTVDLLTLEARLTKTLFKLAVNAVDYGDFTRAKRGTGTDPANRFLDHGNYLAYGLAATATWVLGIPHGLAVLHGKTRRGGLVFDVADLVKDAVILPQAFISAMRGDEEQEFRQACIERLTRTESLDFMIDTLKDVAQALGSGEA
>NZ_CP054580.1|WP_022520845.1|4608501_4609173_-|hypothetical-protein
MHAFRLFAALVTTLVITLPVSLHVQAQTEGQWSEYDDVFEDGARHANIWQWGWTGIYATSLAVNAYQSSEASDPDDRFDARVGVVKSALALGGMLTDRQPHPETLAEYERLKASGDLSGVQALGLQLAQAERERRGWGARVSSLVVNGVAGAVIAADGRESDGAINFVTGMLVNELQIWTQPNQASSAINRFQPANLSLGPITIPGEYALHVAPQQLGATWRY
>NZ_CP054580.1|WP_022520846.1|4608196_4608346_-|hypothetical-protein
MSEHTHRHNKEGPCHFSLMSLSAVKRLLFVAVPLLALWGLVVWASGWLE
>NZ_CP054580.1|WP_022520847.1|4607474_4608200_-|ABC-transporter-ATP-binding-protein
MSQRSLSRLQLHNLHLAQARRTVLEHIEGDFKPGAITALIGANGAGKSTLIQAIMGELRPISGEVVCTVAKERRAWLPQQLALDLTFPMSVEELVMTGSWPSHGALTGYCAGHYRKGREIMARLGISHLAHRPLGELSGGQRQRALIGRTLMQEAELLLLDEPFANVDSETVDILIRILRQMADDGATIIVVLHDMDHLRRLADEVLMLNGGHGRWVAPSALTHQHAPAPFTMGGRHAGSA
>NZ_CP054580.1|WP_022520848.1|4606600_4607491_-|metal-ABC-transporter-permease
MLDLLNAWFVSPFDYGFMRRAVVGGLALSLAAPPLGVFLVLRGMSLIGDAMAHAILPGVALGFLLAGFSLPIMSIGGVLFGLMVALLAGAVSKMGGQREDAAMASFFIISLAAGVMLISLGGSSVDLTHVLFGSILAINSTALLLIAGISTLIVLTLAVVFRALVVECLDPLFLRGQSRRSGWVHSVFLGLLVLNLTAGFQTLGTLMAVGLMMLPATSACFWSKRLEGLIGIAIVLAMVASTGGLLLSFHLDIPSGPSIILLAGFGYLFSALFGRYHSLAAKLRRKTTPLEVEQGA
>NZ_CP054580.1|WP_022520808.1|4618720_4619026_-|hypothetical-protein
MHQHIEWDEPGNASVMQYFKKHPDQSSQPDPGDIISARYQGAMVRVKVEAYREDDAVSIGEVAAIIDTNGGRHQSHDKLEVGHIVRVPDDKRALETPPQED
>NZ_CP054580.1|WP_022520807.1|4619092_4620031_-|esterase-family-protein
MFIPKPPVFSYRFHALLTAFIGWLTFSGHSLASEVEHHQFFSPTLGYDYPYSIYLPDNYDAQATDAYPVVYMLHGSFNTDRDWVSRGNLQQVADRLIAAGHIPPAVFIMPGSRSWWVDGHNEPARSAFFNDLMPHVEATYRVGQERHLRGVAGYSAGGYGALNFALERPELFAAVAALSPASYVPLPPRNSTAWRHPSFINDQGRFDRELWQNLNYTNYLEEYRLRVTPRGTEDEGDLSPVPLYISAGRSDVYDAEFHARILRQAMERIQPNDVRLDLYPGGHTWKVWRASLPAALNFLFQYVGQENSPEDT
>NZ_CP054580.1|WP_022520806.1|4620183_4621212_+|acyltransferase-family-protein
MRKIEEIYWLRAYGCIAVFLFHLLDHVNQRLDNVATDLMRIPLVLGTPIFLFIAIFVFAVRYDKSVPEGFLAQRVKYVMVPYFVYGFIYSTAEWLSQQPSDEPVGFVANAIEYYVYAGWHGYFLIIAMQFYVAYWLFTRWQLWRLNPVPWLWGACVISMAYWGLAYWFEVDLPGYLLWIAPLGWIYVFFLALVLVRYYPLPPESVMLARPAWMQQMARPVWLVLMVALIIAATFAGWLAFSSKEVWVIPFFVLFTLCAMRYLAGRPAPLWVRHINAYSFGIYLAHPMFFVLADLAVEPLSLPIGVYALALMAVGVVGSVGLNKLANTTTLGAMLFGKRLKVS
>NZ_CP054580.1|WP_022520805.1|4621273_4621897_-|hypothetical-protein
MGSVCFIVDAMVTGEMLPRHLKSIRESGVADHLLPILVTATQAQARLSAIEQRYHAHSLITPSRPLGARLNKAAFTSQAEWLIIALQKKPLPAELWCALYSQLNTYTLDALIIGLTRPSLSERILRRLLASALLLPPYIAVRRAWLERLGGFDPELDDNSAIDDFLQRLHACPTRLKTYNGNLLRLTKEPENPFLANAPVTAFTPRP
>NZ_CP054580.1|WP_022520804.1|4622430_4623837_+|glutamate--ammonia-ligase
MSAKTLALIEEHDVKWVDLRFTDTRGKEQHVTVPARDVDEEFFENGQMFDGSSIEGWKGINESDMILRPEDGTGYLDPFTEDATLVLRCDIIEPATMQGYDRDPRSIAKRAEAYLQSTGLGDTAFFGPEPEFFIFDEVHWKSDIQGSMYKITSDEGAWATDSVVEGGNLGHRPRVKGGYFPVPPVDSFHDIRGAMCNTLEAIGQTVEVHHHEVSNAGQNEIGVKFNTLVKKADEVQEMKYVIHNVAHAYGKTATFMPKPLVGDNGSGMHVHQSFWKDGNNQFAGDEYAGLSEMALFYIGGIIKHARALNAFTNASTNSYKRLVPGFEAPVMLAYSARNRSASIRIPYTASPKGKRVEARFPDPTANPYLAFSAMLMAGIDGIKNKIHPGDAMDKNLYDLPPEEGKSVPTVAHSLDQALEALDADRAFLTEGGVFTDEMIDAYIDLKMEEVERIRMTTHPIEFDMYYSC
>NZ_CP054580.1|WP_027958155.1|4624645_4625704_+|nitrogen-regulation-protein-NR(II)
MHQRLLEHLTTAVLLLDGELRVRWMNPAAEALLAVSLSRVHGISLDTLLGGDVSIDEVLAKARDAFHPYTQREARITPLNSEPLTVDYTVTPLSDDELLLEVEPRDRLMQISREEALTTRQETIKVLARGLAHEVKNPLGGIRGAAQLLERDLDDPALREYTHIIVEEVDRLRDLVDSMLGPNRMLKHEPVNIHKVLERVRALLIAEHPSVTISRDYDPSLPDLSGDESQMIQAVLNVARNAVQAMSDAQTPEPTLILRTRARRQFTLGAERHRLVSEVAVIDNGPGIPDTLQETLFYPMVSGRAEGSGLGLSIAQSILHQHQGLIECDSRPGHTEFRLLIPMVINFTGEAS
>NZ_CP054580.1|WP_022520802.1|4625700_4627128_+|nitrogen-regulation-protein-NR(I)
MTEAARNDVARVVIVDDDRAIRWVLERALAQPDLDVECIERADVALTRLLENPPDVLVTDIRMPGIDGLDLMSRVREAHPDLPVIVMTAHSDLDSAVASYQGGAFEYLPKPFDVDEALALVRRAVAHARERQRPVTVPEGLNAEIIGEAPAMQEVFRAIGRLSHSHITVLINGESGTGKERVAQALHQHSPRAGKPFIALNMAAIPRDLIESELFGHEKGAFTGATQQRQGRFEQANGGTLFLDEIGDMPAETQTRLLRVLADGEFYRVGGHTPVKVDVRIIAATHQNLEVLVDDGRFREDLFHRLNVIRIHLPKLAERREDIPRLTRHFLAEAAKELTTDIKVLTSEAEAHLTRLPWPGNVRQLENICRWLTVMASGREILVEDLPPELRSPSASESSAHGDWRTAFRDWADHALAEGHTHLLEEAVPDFERILIETALKHTGGRKGEAAELLGWGRNTLTRKLKTLLPALADE
>NZ_CP054580.1|WP_007111925.1|4627454_4627628_-|Lacal_2735-family-protein
MLGMFKRDPKKKLQQEYERKLQAAMEASRNGDMRANATLTEEAEALLAEIRRIEATQ
>NZ_CP054580.1|WP_027958156.1|4627716_4628244_-|alpha/beta-hydrolase
MMTVYLSHGLESGPGALKTQAMKGVAQKLDDCEPVVMDYRGIAEPQQRLEYLLRVLAERGDDPAQCVLAGSSLGGWLSAAVSAQQPVLGCFLLAPALGLADYPETSPVIQAQHSHIIHGWRDDVVAPEPVIERARLQRLSLRMVDDDHRLHASLETILCDFERFLCQCATPNHYD
>NZ_CP054580.1|WP_053856917.1|4628249_4628375_-|entericidin-A/B-family-lipoprotein
MKRTIGFVMVVTLMLVSGCNTIRGAGEDLQQGGEAIQRAAS

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Crispr_ID: NZ_CP054580_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP054580_2

4618165-4618310

TypeI-F

Consensus_repeat	Method
CGCTGCCGCCCAGGCAGCTCAGAAA	CRISPRCasFinder

2 spacers

cas6f,cas7f,cas5f,cas8f,cas3-cas2,cas1

The CRISPR arrays of NZ_CP054580_2

>merge|NZ_CP054580|2|4618165-4618310|CRISPRCasFinder
CGCTGCCGCCCAGGCAGCTCAGAAAAATCCGGCATCAGGCCACCTCGCCAAGCTCAGGTGCGCTGCCGCCCAGGCAGATCAGAAAGATGCCGTTGAGGACGAGCTCGTGCCATACTTGTGCGCTGCCGCCCAGGCAGTATGGTTAT

>NZ_CP054580|2|2|4618165-4618310|CRISPRCasFinder
CGCTGCCGCCCAGGCAGCTCAGAAA	AATCCGGCATCAGGCCACCTCGCCAAGCTCAGGTG
CGCTGCCGCCCAGGCAGATCAGAAA	GATGCCGTTGAGGACGAGCTCGTGCCATACTTGTG
CGCTGCCGCCCAGGCAGTATGGTTAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054580.1\|WP_022520842.1\|4614074_4615457_+\|type-I-F-CRISPR-associated-protein-Csy1	cas8f	pfam09611_cas8f_CAS-I-F	gnl\|CDD\|378220
NZ_CP054580.1\|WP_022520808.1\|4618720_4619026_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054580.1\|WP_022520845.1\|4608501_4609173_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054580.1\|WP_053856917.1\|4628249_4628375_-\|entericidin-A/B-family-lipoprotein	unknown	unknown	gnl\|CDD\|227797
NZ_CP054580.1\|WP_022520841.1\|4615449_4616418_+\|type-I-F-CRISPR-associated-protein-Csy2	cas5f	cd09736_cas5f_CAS-I-F	gnl\|CDD\|378221
NZ_CP054580.1\|WP_022520839.1\|4617462_4618032_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	cas6f	cd09739_cas6f_CAS-I-F:CAS-IV	gnl\|CDD\|378224
NZ_CP054580.1\|WP_022520846.1\|4608196_4608346_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054580.1\|WP_022520807.1\|4619092_4620031_-\|esterase-family-protein	unknown	unknown	gnl\|CDD\|225256
NZ_CP054580.1\|WP_022520802.1\|4625700_4627128_+\|nitrogen-regulation-protein-NR(I)	unknown	unknown	gnl\|CDD\|273818
NZ_CP054580.1\|WP_022520848.1\|4606600_4607491_-\|metal-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224033
NZ_CP054580.1\|WP_053857147.1\|4609331_4610306_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	cas1	cd09718_cas1_CAS-I-F	gnl\|CDD\|187849
NZ_CP054580.1\|WP_027958155.1\|4624645_4625704_+\|nitrogen-regulation-protein-NR(II)	unknown	unknown	gnl\|CDD\|226370
NZ_CP054580.1\|WP_022520806.1\|4620183_4621212_+\|acyltransferase-family-protein	unknown	unknown	gnl\|CDD\|226446
NZ_CP054580.1\|WP_022520804.1\|4622430_4623837_+\|glutamate--ammonia-ligase	unknown	unknown	gnl\|CDD\|181884
NZ_CP054580.1\|WP_022520840.1\|4616433_4617459_+\|type-I-F-CRISPR-associated-protein-Csy3	cas7f	pfam09615_cas7f_CAS-I-F	gnl\|CDD\|378222
NZ_CP054580.1\|WP_027958156.1\|4627716_4628244_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225496
NZ_CP054580.1\|WP_022520847.1\|4607474_4608200_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213202
NZ_CP054580.1\|WP_007111925.1\|4627454_4627628_-\|Lacal_2735-family-protein	unknown	unknown	unknown
NZ_CP054580.1\|WP_022520843.1\|4610302_4613647_+\|type-I-F-CRISPR-associated-helicase-Cas3	cas3-cas2	cas3-cas2-CAS-I-F	gnl\|CDD\|274201
NZ_CP054580.1\|WP_022520805.1\|4621273_4621897_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
NZ_CP054580.1\|WP_022520842.1\|4614074_4615457_+\|type-I-F-CRISPR-associated-protein-Csy1	gnl\|CDD\|378220	pfam09611, Cas_Csy1, CRISPR-associated protein (Cas_Csy1). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2465 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy1, for CRISPR/Cas Subtype Ypest protein 1.	1.25413e-178
NZ_CP054580.1\|WP_053856917.1\|4628249_4628375_-\|entericidin-A/B-family-lipoprotein	gnl\|CDD\|227797	COG5510, COG5510, Predicted small secreted protein [Function unknown].	1.60926e-08
NZ_CP054580.1\|WP_022520839.1\|4617462_4618032_+\|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4	gnl\|CDD\|378224	pfam09618, Cas_Csy4, CRISPR-associated protein (Cas_Csy4). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This protein family, typified by YPO2462 of Yersinia pestis, is a CRISPR-associated (Cas) family strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy4, for CRISPR/Cas Subtype Ypest protein 4.	1.40765e-82
NZ_CP054580.1\|WP_022520848.1\|4606600_4607491_-\|metal-ABC-transporter-permease	gnl\|CDD\|224033	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism].	6.1611e-55
NZ_CP054580.1\|WP_022520807.1\|4619092_4620031_-\|esterase-family-protein	gnl\|CDD\|225256	COG2382, Fes, Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism].	1.87782e-26
NZ_CP054580.1\|WP_022520802.1\|4625700_4627128_+\|nitrogen-regulation-protein-NR(I)	gnl\|CDD\|273818	TIGR01818, Nitrogen_assimilation_regulatory_protein, nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. [Central intermediary metabolism, Nitrogen metabolism, Regulatory functions, DNA interactions, Signal transduction, Two-component systems].	0
NZ_CP054580.1\|WP_053857147.1\|4609331_4610306_+\|type-I-F-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187849	cd09718, Cas1_I-F, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	0
NZ_CP054580.1\|WP_022520806.1\|4620183_4621212_+\|acyltransferase-family-protein	gnl\|CDD\|226446	COG3936, COG3936, Protein involved in polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation [Carbohydrate transport and metabolism].	2.13674e-12
NZ_CP054580.1\|WP_022520841.1\|4615449_4616418_+\|type-I-F-CRISPR-associated-protein-Csy2	gnl\|CDD\|378221	pfam09614, Cas_Csy2, CRISPR-associated protein (Cas_Csy2). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2464 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy2, for CRISPR/Cas Subtype Ypest protein 2.	1.37119e-161
NZ_CP054580.1\|WP_022520840.1\|4616433_4617459_+\|type-I-F-CRISPR-associated-protein-Csy3	gnl\|CDD\|378222	pfam09615, Cas_Csy3, CRISPR-associated protein (Cas_Csy3). CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) is a widespread family of prokaryotic direct repeats with spacers of unique sequence between consecutive repeats. This entry, typified by YPO2463 of Yersinia pestis, is a CRISPR-associated (Cas) entry strictly associated with the Ypest subtype of CRISPR/Cas locus. It is designated Csy3, for CRISPR/Cas Subtype Ypest protein 3.	0
NZ_CP054580.1\|WP_022520804.1\|4622430_4623837_+\|glutamate--ammonia-ligase	gnl\|CDD\|181884	PRK09469, glnA, glutamate--ammonia ligase.	0
NZ_CP054580.1\|WP_027958156.1\|4627716_4628244_-\|alpha/beta-hydrolase	gnl\|CDD\|225496	COG2945, COG2945, Predicted hydrolase of the alpha/beta superfamily [General function prediction only].	6.10288e-08
NZ_CP054580.1\|WP_022520847.1\|4607474_4608200_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213202	cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.	1.4523e-76
NZ_CP054580.1\|WP_022520843.1\|4610302_4613647_+\|type-I-F-CRISPR-associated-helicase-Cas3	gnl\|CDD\|274201	TIGR02562, conserved_hypothetical_protein, CRISPR-associated helicase Cas3, subtype I-F/YPEST. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.	0
NZ_CP054580.1\|WP_027958155.1\|4624645_4625704_+\|nitrogen-regulation-protein-NR(II)	gnl\|CDD\|226370	COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms].	2.02928e-132

>NZ_CP054580.1|WP_022520839.1|4617462_4618032_+|type-I-F-CRISPR-associated-endoribonuclease-Cas6/Csy4
MDHYIDIRLRPDPDFAPAMLMGALYNKLHRALFDLQATDLGVSFPGHKRGVRARTLGDHLRLHGTQARLGQLMGADWLTGMRDHTQVSEVLAVPANSQHFNVARKQFNTGSPSRAKRYAKRHDISEDEAQQIYAKLAARRIELPFVQINSRSTQQRFSLFIEHGKPQEKPVAGSFNHYGLSPDATVPWF
>NZ_CP054580.1|WP_022520840.1|4616433_4617459_+|type-I-F-CRISPR-associated-protein-Csy3
MAKNDTLKTASVLAFERKLDPSDALLYASNWDKRQDEQQWQPVVVREKSVRGTISNRLKAKDQDPAKLDAQIENPNLQTVDVATLPHDADTLVARFTLRVLAGAGTPSACNNAEYQAKLEQAVAAYKQAQGFGELAQRYANNLANGRFLWRNRMGAEQVEVSIRQLAQGKATKEWNFDALSLSLRAFEDTAELKELASVIAAALAGEQHLLLEVVAYVRMGSGQEVFPSQELILDRGRGDKSKTLYHVSDIAGIHSQKLGNAIRTIDTWYPNENDDDLGPIAVEPYGSVTTQGKAYRQPKQKADFYSLLDNWMIKDQVPTKEDQHFVMATLIRGGVFGEAG
>NZ_CP054580.1|WP_022520841.1|4615449_4616418_+|type-I-F-CRISPR-associated-protein-Csy2
MSEVKNLLVLPRLRVQNANAISSPMTWGFPAMSAFVGLMHALERKLAEASLPVSLGRVGVICHDFEAQATEGGYIRGFHLTRNPVDKTGGTAAIVEEGRIHLDITLIFAIDTGTAESEHEDIAHQISETVSGMRIAGGSVVPNRNVPSHKQRPQWVMLDDNEDERYKQFARLKRRWLPGFALTLRDDYLTEHLTTLQKHNPEASLLDAWLDLSRLNHVCTLENEGEPNEKPVWQAQRPYRGWLVPIPVGYGAISDLFQPGEVANARDTMTQFRFVESLYSIGEWVSPHRMKQPEDLLWYVDNDEEAGLYRLNNDYHLRASAQ
>NZ_CP054580.1|WP_022520842.1|4614074_4615457_+|type-I-F-CRISPR-associated-protein-Csy1
MPTIPSGSWQQLRALIEVFLKERFDTKAEKLAPDDPKYQALVEQFQFDTWVNDAARRVGQLQVVTHSLKPIHPDAKGSNLYAPPESLHAHNLVGSHVLPADFAGDVVGNAAALDVYKFLKLQFEGKSLLERALENDSEFAKALSDNPEQAQAWINAFAAITEPRGEHASHTRGKQLYWLVGDDAAELENDADNFRLLAPLYATSLAHRVFQTINHDRFSEEAKDSRKAKREGKYAEQPVHSYPNLAVQKMGGTKPQNISQLNSERGGNNYLLASLPPSWNVSDIRPPLKVASVFSHPGVFGSRSEVRSLVKDFKRFLETDPSTDMHTRDLRDDYTAMLMDELALFAMQMHSLPAGWSDDEKCELVAEEAFWLDPGRAEEDVPFREARNSVEWAEEIRHRFANWLNAALGEKLPLGDVEFRHWQKTLAKDATHQRLQDRDRRWMESLMEDLHNLPGGDDDE
>NZ_CP054580.1|WP_022520843.1|4610302_4613647_+|type-I-F-CRISPR-associated-helicase-Cas3
MNVLLISQCNKNALKETRRILDQFAERRGDRTWQTPITQAGLDTLRKLLRKKARKNTAVACHWIRGHDHSELVWVVGDASRFNIQGAVPTNITARDILRSRDENDWHNGEDILLLTALAALLHDLGKACDAFQQRLKGKVEGRNLYRHEWISLRLFQAFIGSDDDATWLARLAEGDYQTQDWLGGLERDGIDAPTSAVFSRLPPLAAALGWLVLSHHRLPLKPPEKVGENERRWGRGNAPLQAEQLGGLFASIHAEWNEIPETQDSKRIAPYWQFKAGLPVSTPRWRDRAKKLATRLQARLQNGEHWLESRYVMHLARLSLMLADHHYSSLEDLQHRVRGEPNYPLIANTVRKTGKPNQLLDEHILGVEKHAAAVARALPSVDSHLPRLARHKGFRKRSSHPRFRWQDKAFDLAQSLRERSQRQGFFGINMASTGCGKTLANGRIMYALADPQQGARFSIALGLRTLTLQTGQALRDRLHLGEDELAVRVGGSANQALFEHYEQEAEASGSASNQALIEEDAHVVFDGNFDSHPVLRRLSDEPGTRALIAAPILVCTVDHLVPATESTRGGRQIVPMLRLMSSDLVLDEVDDFDINDLPALTRLVNWAGLLGSRVLLSSATLPPALVEGLYEAYRSGREAFQRHRGEPGLATDICCAWFDEHDRQHHNCASSETFQAAHNAFAKRRLERLAKSPVRRRADILTLPSLGKRPEEIRPAIATLLRTHAQTLHEQHHTLDPCTGKRVSFGLIRMANIDPLVDVARALFQQGASEGVRLHLCVYHSRHPLVMRSEIERRLDKTLQRAEPDRVFQQPDIRRLMDSSEENDHLFIVLGSPVTEVGRDHDYDWAIVEPSSMRSIIQLAGRVRRHREQACEVANILLLETNLKHLERGDEPAFHKPGFETKMAWRLNSHSLNTLLTPDEYQVIDARPRVLARETLHAKDSLVDLEHERLHQLMIEQPAEPLTKKELRIGKTPKPPPLGAYSWHGMPQLHLTGVLIQRDPFRKQLEPEITLALLPDEGGETWTLHRVDDGARRGEKLYVPVEESLLVRVNLAKEQGERIQPWGASDYLTALADLAEDLDISLDRAARTFGTVTASARNQRWGYHPVLGFWRSK
>NZ_CP054580.1|WP_053857147.1|4609331_4610306_+|type-I-F-CRISPR-associated-endonuclease-Cas1
MDDFSPSDLKTILHSKRANLYYLQHCRVLVNGGRVEYVTDEGSKSRYWNIPIANTTSILLGTGTSITQAAMRELAKAGVLVGFCGGGGTPLFAANEVDVDVAWLTPQSEYRPTEYLQYWVRFWFDDVKRLDAARAFQQARLARIESLWTSRVMKDAGFSISTDHLHSALNHHREAINKAPSTVDLLTLEARLTKTLFKLAVNAVDYGDFTRAKRGTGTDPANRFLDHGNYLAYGLAATATWVLGIPHGLAVLHGKTRRGGLVFDVADLVKDAVILPQAFISAMRGDEEQEFRQACIERLTRTESLDFMIDTLKDVAQALGSGEA
>NZ_CP054580.1|WP_022520845.1|4608501_4609173_-|hypothetical-protein
MHAFRLFAALVTTLVITLPVSLHVQAQTEGQWSEYDDVFEDGARHANIWQWGWTGIYATSLAVNAYQSSEASDPDDRFDARVGVVKSALALGGMLTDRQPHPETLAEYERLKASGDLSGVQALGLQLAQAERERRGWGARVSSLVVNGVAGAVIAADGRESDGAINFVTGMLVNELQIWTQPNQASSAINRFQPANLSLGPITIPGEYALHVAPQQLGATWRY
>NZ_CP054580.1|WP_022520846.1|4608196_4608346_-|hypothetical-protein
MSEHTHRHNKEGPCHFSLMSLSAVKRLLFVAVPLLALWGLVVWASGWLE
>NZ_CP054580.1|WP_022520847.1|4607474_4608200_-|ABC-transporter-ATP-binding-protein
MSQRSLSRLQLHNLHLAQARRTVLEHIEGDFKPGAITALIGANGAGKSTLIQAIMGELRPISGEVVCTVAKERRAWLPQQLALDLTFPMSVEELVMTGSWPSHGALTGYCAGHYRKGREIMARLGISHLAHRPLGELSGGQRQRALIGRTLMQEAELLLLDEPFANVDSETVDILIRILRQMADDGATIIVVLHDMDHLRRLADEVLMLNGGHGRWVAPSALTHQHAPAPFTMGGRHAGSA
>NZ_CP054580.1|WP_022520848.1|4606600_4607491_-|metal-ABC-transporter-permease
MLDLLNAWFVSPFDYGFMRRAVVGGLALSLAAPPLGVFLVLRGMSLIGDAMAHAILPGVALGFLLAGFSLPIMSIGGVLFGLMVALLAGAVSKMGGQREDAAMASFFIISLAAGVMLISLGGSSVDLTHVLFGSILAINSTALLLIAGISTLIVLTLAVVFRALVVECLDPLFLRGQSRRSGWVHSVFLGLLVLNLTAGFQTLGTLMAVGLMMLPATSACFWSKRLEGLIGIAIVLAMVASTGGLLLSFHLDIPSGPSIILLAGFGYLFSALFGRYHSLAAKLRRKTTPLEVEQGA
>NZ_CP054580.1|WP_022520808.1|4618720_4619026_-|hypothetical-protein
MHQHIEWDEPGNASVMQYFKKHPDQSSQPDPGDIISARYQGAMVRVKVEAYREDDAVSIGEVAAIIDTNGGRHQSHDKLEVGHIVRVPDDKRALETPPQED
>NZ_CP054580.1|WP_022520807.1|4619092_4620031_-|esterase-family-protein
MFIPKPPVFSYRFHALLTAFIGWLTFSGHSLASEVEHHQFFSPTLGYDYPYSIYLPDNYDAQATDAYPVVYMLHGSFNTDRDWVSRGNLQQVADRLIAAGHIPPAVFIMPGSRSWWVDGHNEPARSAFFNDLMPHVEATYRVGQERHLRGVAGYSAGGYGALNFALERPELFAAVAALSPASYVPLPPRNSTAWRHPSFINDQGRFDRELWQNLNYTNYLEEYRLRVTPRGTEDEGDLSPVPLYISAGRSDVYDAEFHARILRQAMERIQPNDVRLDLYPGGHTWKVWRASLPAALNFLFQYVGQENSPEDT
>NZ_CP054580.1|WP_022520806.1|4620183_4621212_+|acyltransferase-family-protein
MRKIEEIYWLRAYGCIAVFLFHLLDHVNQRLDNVATDLMRIPLVLGTPIFLFIAIFVFAVRYDKSVPEGFLAQRVKYVMVPYFVYGFIYSTAEWLSQQPSDEPVGFVANAIEYYVYAGWHGYFLIIAMQFYVAYWLFTRWQLWRLNPVPWLWGACVISMAYWGLAYWFEVDLPGYLLWIAPLGWIYVFFLALVLVRYYPLPPESVMLARPAWMQQMARPVWLVLMVALIIAATFAGWLAFSSKEVWVIPFFVLFTLCAMRYLAGRPAPLWVRHINAYSFGIYLAHPMFFVLADLAVEPLSLPIGVYALALMAVGVVGSVGLNKLANTTTLGAMLFGKRLKVS
>NZ_CP054580.1|WP_022520805.1|4621273_4621897_-|hypothetical-protein
MGSVCFIVDAMVTGEMLPRHLKSIRESGVADHLLPILVTATQAQARLSAIEQRYHAHSLITPSRPLGARLNKAAFTSQAEWLIIALQKKPLPAELWCALYSQLNTYTLDALIIGLTRPSLSERILRRLLASALLLPPYIAVRRAWLERLGGFDPELDDNSAIDDFLQRLHACPTRLKTYNGNLLRLTKEPENPFLANAPVTAFTPRP
>NZ_CP054580.1|WP_022520804.1|4622430_4623837_+|glutamate--ammonia-ligase
MSAKTLALIEEHDVKWVDLRFTDTRGKEQHVTVPARDVDEEFFENGQMFDGSSIEGWKGINESDMILRPEDGTGYLDPFTEDATLVLRCDIIEPATMQGYDRDPRSIAKRAEAYLQSTGLGDTAFFGPEPEFFIFDEVHWKSDIQGSMYKITSDEGAWATDSVVEGGNLGHRPRVKGGYFPVPPVDSFHDIRGAMCNTLEAIGQTVEVHHHEVSNAGQNEIGVKFNTLVKKADEVQEMKYVIHNVAHAYGKTATFMPKPLVGDNGSGMHVHQSFWKDGNNQFAGDEYAGLSEMALFYIGGIIKHARALNAFTNASTNSYKRLVPGFEAPVMLAYSARNRSASIRIPYTASPKGKRVEARFPDPTANPYLAFSAMLMAGIDGIKNKIHPGDAMDKNLYDLPPEEGKSVPTVAHSLDQALEALDADRAFLTEGGVFTDEMIDAYIDLKMEEVERIRMTTHPIEFDMYYSC
>NZ_CP054580.1|WP_027958155.1|4624645_4625704_+|nitrogen-regulation-protein-NR(II)
MHQRLLEHLTTAVLLLDGELRVRWMNPAAEALLAVSLSRVHGISLDTLLGGDVSIDEVLAKARDAFHPYTQREARITPLNSEPLTVDYTVTPLSDDELLLEVEPRDRLMQISREEALTTRQETIKVLARGLAHEVKNPLGGIRGAAQLLERDLDDPALREYTHIIVEEVDRLRDLVDSMLGPNRMLKHEPVNIHKVLERVRALLIAEHPSVTISRDYDPSLPDLSGDESQMIQAVLNVARNAVQAMSDAQTPEPTLILRTRARRQFTLGAERHRLVSEVAVIDNGPGIPDTLQETLFYPMVSGRAEGSGLGLSIAQSILHQHQGLIECDSRPGHTEFRLLIPMVINFTGEAS
>NZ_CP054580.1|WP_022520802.1|4625700_4627128_+|nitrogen-regulation-protein-NR(I)
MTEAARNDVARVVIVDDDRAIRWVLERALAQPDLDVECIERADVALTRLLENPPDVLVTDIRMPGIDGLDLMSRVREAHPDLPVIVMTAHSDLDSAVASYQGGAFEYLPKPFDVDEALALVRRAVAHARERQRPVTVPEGLNAEIIGEAPAMQEVFRAIGRLSHSHITVLINGESGTGKERVAQALHQHSPRAGKPFIALNMAAIPRDLIESELFGHEKGAFTGATQQRQGRFEQANGGTLFLDEIGDMPAETQTRLLRVLADGEFYRVGGHTPVKVDVRIIAATHQNLEVLVDDGRFREDLFHRLNVIRIHLPKLAERREDIPRLTRHFLAEAAKELTTDIKVLTSEAEAHLTRLPWPGNVRQLENICRWLTVMASGREILVEDLPPELRSPSASESSAHGDWRTAFRDWADHALAEGHTHLLEEAVPDFERILIETALKHTGGRKGEAAELLGWGRNTLTRKLKTLLPALADE
>NZ_CP054580.1|WP_007111925.1|4627454_4627628_-|Lacal_2735-family-protein
MLGMFKRDPKKKLQQEYERKLQAAMEASRNGDMRANATLTEEAEALLAEIRRIEATQ
>NZ_CP054580.1|WP_027958156.1|4627716_4628244_-|alpha/beta-hydrolase
MMTVYLSHGLESGPGALKTQAMKGVAQKLDDCEPVVMDYRGIAEPQQRLEYLLRVLAERGDDPAQCVLAGSSLGGWLSAAVSAQQPVLGCFLLAPALGLADYPETSPVIQAQHSHIIHGWRDDVVAPEPVIERARLQRLSLRMVDDDHRLHASLETILCDFERFLCQCATPNHYD
>NZ_CP054580.1|WP_053856917.1|4628249_4628375_-|entericidin-A/B-family-lipoprotein
MKRTIGFVMVVTLMLVSGCNTIRGAGEDLQQGGEAIQRAAS

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
NZ_CP054580_1	1.1\|512689\|59\|NZ_CP054580\|CRISPRCasFinder	512689-512747	59	NZ_CP054580.1	520432-520490	2	0.966
NZ_CP054580_1	1.1\|512689\|59\|NZ_CP054580\|CRISPRCasFinder	512689-512747	59	NZ_CP054580.1	521364-521422	2	0.966

1. spacer 1.1|512689|59|NZ_CP054580|CRISPRCasFinder matches to position: 520432-520490, mismatch: 2, identity: 0.966

ccgagattgcttcactacgttcgcaatgacaggtgaaggatttcaatgatatcacctac	CRISPR spacer
ccgagattgcttcactacgttcgcaatgacagatgaaggatttcaatgacatcacctac	Protospacer
********************************.****************.*********

2. spacer 1.1|512689|59|NZ_CP054580|CRISPRCasFinder matches to position: 521364-521422, mismatch: 2, identity: 0.966

ccgagattgcttcactacgttcgcaatgacaggtgaaggatttcaatgatatcacctac	CRISPR spacer
ccgagattgctgcactacgttcgcaatgacaggtgaaggatttcaatgacatcacctac	Protospacer
*********** *************************************.*********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP054580_2	2.1\|4618190\|35\|NZ_CP054580\|CRISPRCasFinder	4618190-4618224	35	KX620754	Propionibacterium phage G4, complete genome	30953-30987	10	0.714

1. spacer 2.1|4618190|35|NZ_CP054580|CRISPRCasFinder matches to KX620754 (Propionibacterium phage G4, complete genome) position: , mismatch: 10, identity: 0.714

aatccggcatcaggccacctcgccaagctcaggtg	CRISPR spacer
tttctggcatcaggccacctccccaaggttggagc	Protospacer
  **.**************** ***** *..*.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

598137 : 606190

Enterobacteria_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_174788097.1\|598137_599046_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	6.2e-07	23.8
WP_174788098.1\|599104_600352_+	GDP-mannose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.5e-91	46.3
WP_174788099.1\|600475_601390_+	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA
WP_174788100.1\|601472_602387_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	1.7e-105	65.5
WP_174788101.1\|602455_603001_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	8.1e-55	55.2
WP_174788102.1\|603170_603653_+	hypothetical protein	NA	NA	NA	NA
WP_174788103.1\|603649_604765_+	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	A0A1V0SAG5	Catovirus	1.6e-25	28.5
WP_174788104.1\|604909_606190_+	UDP-N-acetyl-D-mannosamine dehydrogenase	M1HYW7	Paramecium_bursaria_Chlorella_virus	8.1e-21	25.2

DBSCAN-SWA_2

2075496 : 2141514

Halomonas_phage(15.62%)

portal,tail,tRNA,capsid,terminase,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_022522890.1\|2075496_2076774_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.8e-92	44.1
WP_022522889.1\|2077193_2078441_+	dicarboxylate/amino acid:cation symporter	NA	NA	NA	NA
WP_022522888.1\|2078939_2079686_-	SDR family oxidoreductase	NA	NA	NA	NA
WP_022522887.1\|2079731_2081030_-	TRAP transporter large permease	NA	NA	NA	NA
WP_053857032.1\|2081026_2081539_-	TRAP transporter small permease subunit	NA	NA	NA	NA
WP_022522886.1\|2081595_2082621_-	TRAP transporter substrate-binding protein	NA	NA	NA	NA
WP_022522885.1\|2083117_2084287_+	exo-alpha-sialidase	NA	NA	NA	NA
WP_022522884.1\|2084283_2085237_+	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA
WP_022522883.1\|2085233_2086154_+	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
WP_022522882.1\|2086150_2087275_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
WP_022522881.1\|2087392_2088442_+	four-carbon acid sugar kinase family protein	NA	NA	NA	NA
WP_022522880.1\|2088454_2089198_+	FadR family transcriptional regulator	NA	NA	NA	NA
WP_022522879.1\|2089484_2090075_+	DUF4202 domain-containing protein	NA	NA	NA	NA
WP_022522878.1\|2090177_2093384_+	FAD-binding oxidoreductase	NA	NA	NA	NA
WP_022522877.1\|2093489_2094551_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
WP_022522876.1\|2094568_2097712_+	efflux RND transporter permease subunit	NA	NA	NA	NA
WP_022522875.1\|2097723_2098527_-	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	6.4e-64	50.8
WP_022522874.1\|2098536_2099556_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	3.0e-95	55.8
WP_174788157.1\|2099593_2100226_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	1.6e-65	57.7
WP_174788158.1\|2100532_2100907_+	hypothetical protein	NA	NA	NA	NA
WP_174788474.1\|2101078_2101735_-	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.7e-30	35.2
WP_174788159.1\|2101864_2102095_+	DUF1654 domain-containing protein	NA	NA	NA	NA
WP_174788475.1\|2102097_2102541_+	translesion error-prone DNA polymerase V autoproteolytic subunit	F1C5A6	Cronobacter_phage	1.3e-21	43.8
WP_174788160.1\|2102537_2103812_+	Y-family DNA polymerase	I6RSM4	Salmonella_phage	7.0e-81	40.2
WP_174788161.1\|2104096_2104336_+	hypothetical protein	NA	NA	NA	NA
WP_174788162.1\|2104528_2104948_-	hypothetical protein	NA	NA	NA	NA
WP_174788163.1\|2104944_2105415_-	hypothetical protein	NA	NA	NA	NA
WP_174788164.1\|2105424_2107632_-	hypothetical protein	A0A1L5C092	Aquamicrobium_phage	4.2e-09	63.5
WP_022522864.1\|2107634_2108456_-	hypothetical protein	NA	NA	NA	NA
WP_174788165.1\|2108452_2109808_-	hypothetical protein	NA	NA	NA	NA
WP_174788166.1\|2109804_2115975_-	EF-hand domain-containing protein	A0A2I7QT20	Vibrio_phage	1.6e-18	29.9
WP_022522861.1\|2116049_2116358_-	hypothetical protein	NA	NA	NA	NA
WP_022522860.1\|2116360_2117230_-	exonuclease-like protein	A0A0R6PHP9	Moraxella_phage	6.0e-52	40.5
WP_082116875.1\|2117305_2117863_-	DUF1799 domain-containing protein	D6PGB0	uncultured_phage	3.4e-08	38.3
WP_174788167.1\|2117814_2118156_-	hypothetical protein	NA	NA	NA	NA
WP_022522857.1\|2118235_2119201_-	hypothetical protein	D6PGA5	uncultured_phage	4.4e-27	31.4
WP_053857031.1\|2119193_2119379_-	hypothetical protein	NA	NA	NA	NA
WP_174788168.1\|2119439_2120168_-	hypothetical protein	NA	NA	NA	NA
WP_022522855.1\|2120164_2120617_-	hypothetical protein	NA	NA	NA	NA
WP_022522854.1\|2120603_2120939_-\|head	phage head closure protein	NA	NA	NA	NA
WP_022522853.1\|2120942_2121503_-\|head,tail	phage head-tail connector protein	K7PKT4	Enterobacteria_phage	1.0e-07	51.8
WP_022522852.1\|2121595_2121829_-	hypothetical protein	NA	NA	NA	NA
WP_174788169.1\|2121922_2123218_-\|capsid	phage major capsid protein	Q6UAX6	Klebsiella_phage	1.6e-136	60.4
WP_174788170.1\|2123290_2124229_-	S49 family peptidase	Q7Y411	Yersinia_phage	1.1e-75	48.1
WP_174788171.1\|2124216_2125494_-\|portal	phage portal protein	Q6UAX8	Klebsiella_phage	1.4e-153	63.8
WP_088700352.1\|2125493_2125691_-	hypothetical protein	Q8W630	Enterobacteria_phage	8.6e-07	48.1
WP_174788172.1\|2125684_2127400_-\|terminase	terminase large subunit	U5P0Q5	Shigella_phage	5.5e-174	54.4
WP_088700354.1\|2127406_2127877_-\|terminase	phage terminase small subunit P27 family	A4JWZ6	Burkholderia_virus	1.2e-35	49.7
WP_053857030.1\|2127989_2128355_-	HNH endonuclease	A0A1V0E8A5	Vibrio_phage	1.7e-24	51.3
WP_053857029.1\|2128451_2128637_-	hypothetical protein	NA	NA	NA	NA
WP_022522844.1\|2128593_2129010_-	hypothetical protein	NA	NA	NA	NA
WP_022522843.1\|2129006_2129219_-	hypothetical protein	A0A1J0GV02	Halomonas_phage	2.4e-07	45.5
WP_022522842.1\|2129215_2129542_-	hypothetical protein	NA	NA	NA	NA
WP_022522841.1\|2129538_2130045_-	N-acetylmuramoyl-L-alanine amidase	A0A0S2MVL1	Pseudomonas_phage	1.0e-35	53.8
WP_053857028.1\|2130587_2130779_+	hypothetical protein	NA	NA	NA	NA
WP_174788173.1\|2130795_2131728_+	hypothetical protein	NA	NA	NA	NA
WP_022522839.1\|2131747_2132362_-	hypothetical protein	A0A1J0GV17	Halomonas_phage	5.6e-28	41.2
WP_053857027.1\|2132484_2132667_+	type II toxin-antitoxin system HicA family toxin	A0A2H4JDU5	uncultured_Caudovirales_phage	7.0e-11	58.3
WP_022522837.1\|2132733_2133153_+	type II toxin-antitoxin system HicB family antitoxin	A0A0R6PJC0	Moraxella_phage	2.0e-21	38.1
WP_082116925.1\|2133155_2133653_-	VRR-NUC domain-containing protein	A0A2D1GNH3	Pseudomonas_phage	8.6e-19	43.2
WP_053857026.1\|2133661_2133976_-	hypothetical protein	NA	NA	NA	NA
WP_022522833.1\|2134236_2134593_-	hypothetical protein	NA	NA	NA	NA
WP_022522832.1\|2134579_2134867_-	hypothetical protein	NA	NA	NA	NA
WP_053857224.1\|2134866_2135235_-	HNH endonuclease	Q3HQV7	Burkholderia_phage	8.3e-27	48.3
WP_022522830.1\|2135273_2135594_-	winged helix-turn-helix transcriptional regulator	A0A1J0GUU5	Halomonas_phage	1.1e-11	43.8
WP_022522828.1\|2136230_2137187_-	helix-turn-helix domain-containing protein	A0A1W6JP36	Morganella_phage	4.2e-06	28.3
WP_053857024.1\|2137183_2137441_-	hypothetical protein	NA	NA	NA	NA
WP_022522826.1\|2137523_2137766_-	hypothetical protein	NA	NA	NA	NA
WP_022522825.1\|2137861_2138554_+	phage regulatory protein	A0A2H4J176	uncultured_Caudovirales_phage	1.7e-41	43.0
WP_022522824.1\|2138694_2139081_+	response regulator transcription factor	NA	NA	NA	NA
WP_022522823.1\|2139077_2139356_+	hypothetical protein	NA	NA	NA	NA
WP_022522822.1\|2139352_2139649_+	hypothetical protein	NA	NA	NA	NA
WP_022522821.1\|2139645_2139927_+	hypothetical protein	NA	NA	NA	NA
WP_022522820.1\|2139936_2140188_+	hypothetical protein	A0A1J0GUW1	Halomonas_phage	2.7e-13	64.6
WP_022522819.1\|2140283_2140580_+	hypothetical protein	NA	NA	NA	NA
WP_022522817.1\|2140581_2141514_+	recombination-associated protein RdgC	A0A1J0GUV6	Halomonas_phage	3.0e-113	70.2

DBSCAN-SWA_3

2527666 : 2541419

Pseudomonas_phage(28.57%)

tail,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_174788199.1\|2527666_2532469_-	host specificity protein J	A0A2I6PHT2	Pseudomonas_phage	1.4e-190	42.9
WP_174788200.1\|2532533_2533118_-\|tail	tail assembly protein	Q6JIL3	Burkholderia_virus	3.6e-16	34.0
WP_174788201.1\|2533238_2533964_-	C40 family peptidase	W6E9P7	Rhizobium_phage	2.9e-39	36.5
WP_174788202.1\|2533965_2534664_-\|tail	phage minor tail protein L	A0A2I6PHT9	Pseudomonas_phage	2.9e-41	37.8
WP_174788203.1\|2534660_2535008_-\|tail	phage tail protein	NA	NA	NA	NA
WP_174788204.1\|2535116_2538320_-\|tail	phage tail tape measure protein	F4YXU1	Roseobacter_phage	1.8e-48	37.6
WP_174788205.1\|2538534_2538813_-	hypothetical protein	NA	NA	NA	NA
WP_174788206.1\|2538836_2539208_-	hypothetical protein	NA	NA	NA	NA
WP_174788207.1\|2539347_2539803_-	hypothetical protein	A0A1V0E8B3	Vibrio_phage	6.0e-11	31.8
WP_174788208.1\|2539934_2540309_-	DUF3168 domain-containing protein	NA	NA	NA	NA
WP_174788209.1\|2540319_2540769_-	HK97 gp10 family phage protein	A0A1J0GUY2	Halomonas_phage	1.0e-15	38.6
WP_174788210.1\|2540761_2541115_-\|head	phage head closure protein	NA	NA	NA	NA
WP_174788211.1\|2541107_2541419_-\|head,tail	phage gp6-like head-tail connector protein	NA	NA	NA	NA

DBSCAN-SWA_4

2657393 : 2739827

Pseudomonas_phage(27.78%)

tail,transposase,protease,integrase,head

attL 2659714:2659759|attR 2741346:2741391

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_174788252.1\|2657393_2658555_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	9.2e-56	41.9
WP_174788253.1\|2658789_2659071_-	XRE family transcriptional regulator	A0A2D1GR59	Pseudomonas_phage	2.3e-13	48.3
WP_174788254.1\|2659067_2659415_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
2659714:2659759	attL	NA	NA	NA	NA
WP_174788255.1\|2661602_2662580_+	oxidoreductase	NA	NA	NA	NA
WP_174788256.1\|2662608_2663826_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_174788257.1\|2663859_2664345_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_174788258.1\|2665213_2666062_-	carboxylating nicotinate-nucleotide diphosphorylase	NA	NA	NA	NA
WP_174788259.1\|2667115_2669029_-	TRAP transporter fused permease subunit	NA	NA	NA	NA
WP_174788260.1\|2669064_2670063_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA
WP_174788478.1\|2670166_2671159_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_174788261.1\|2671238_2672552_-	Rieske 2Fe-2S domain-containing protein	NA	NA	NA	NA
WP_174788262.1\|2672790_2673279_+	sigma 54-interacting transcriptional regulator	NA	NA	NA	NA
WP_174788263.1\|2674090_2674339_+	hypothetical protein	NA	NA	NA	NA
WP_174788264.1\|2674342_2675134_+	hypothetical protein	NA	NA	NA	NA
WP_174788265.1\|2676345_2676567_+	hypothetical protein	NA	NA	NA	NA
WP_174788266.1\|2676635_2676839_+	hypothetical protein	NA	NA	NA	NA
WP_174788267.1\|2677609_2678791_-	MFS transporter	NA	NA	NA	NA
WP_174788268.1\|2679128_2681060_-	TRAP transporter fused permease subunit	NA	NA	NA	NA
WP_174788269.1\|2681064_2682021_-	TAXI family TRAP transporter solute-binding subunit	NA	NA	NA	NA
WP_174788479.1\|2682102_2682837_-	class II aldolase/adducin family protein	NA	NA	NA	NA
WP_174788270.1\|2682970_2683885_+	LysR family transcriptional regulator	NA	NA	NA	NA
WP_174788271.1\|2683881_2685624_-	thiamine pyrophosphate-binding protein	NA	NA	NA	NA
WP_174788272.1\|2685632_2687090_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA
WP_174788273.1\|2687436_2689386_+	FAD-dependent monooxygenase	NA	NA	NA	NA
WP_174788480.1\|2689553_2690024_+	MarR family transcriptional regulator	NA	NA	NA	NA
WP_174788252.1\|2690345_2691508_-\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	9.2e-56	41.9
WP_174788481.1\|2691753_2692116_-\|transposase	transposase	A0A1B1P773	Bacillus_phage	1.4e-18	48.4
WP_174788274.1\|2692130_2692664_-\|transposase	transposase	NA	NA	NA	NA
WP_174788275.1\|2694022_2694223_+	SPW repeat protein	NA	NA	NA	NA
WP_174788276.1\|2694444_2694942_-	DNA repair protein RadC	NA	NA	NA	NA
WP_174788277.1\|2695036_2695648_-	YqaJ viral recombinase family protein	A0A1B0VMB3	Pseudomonas_phage	1.6e-75	68.8
WP_174788278.1\|2695685_2696441_-	ERF family protein	Q9MC70	Pseudomonas_phage	6.6e-63	57.5
WP_174788279.1\|2696464_2696635_-	hypothetical protein	NA	NA	NA	NA
WP_174788280.1\|2696756_2697725_-	DUF932 domain-containing protein	A0A0H4INH5	Stenotrophomonas_phage	2.5e-62	43.0
WP_174788281.1\|2697835_2698102_-	hypothetical protein	NA	NA	NA	NA
WP_174788282.1\|2698753_2699449_+	inovirus-type Gp2 protein	NA	NA	NA	NA
WP_174788283.1\|2700459_2701917_+	DUF3987 domain-containing protein	NA	NA	NA	NA
WP_174788284.1\|2702030_2702744_-	hypothetical protein	NA	NA	NA	NA
WP_174788285.1\|2703133_2704141_+\|integrase	site-specific integrase	A0A0S2SYQ7	Pseudomonas_phage	4.6e-19	29.2
WP_089691650.1\|2704340_2705045_-	c repressor	A0A0A7DJB4	Pseudomonas_phage	1.5e-69	54.7
WP_174788286.1\|2705197_2705551_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_174788287.1\|2705553_2705991_+	hypothetical protein	A0A0A1IVF5	Pseudomonas_phage	2.8e-50	66.2
WP_089691665.1\|2705987_2708045_+\|integrase,transposase	DDE-type integrase/transposase/recombinase	A0A2H4JEQ4	uncultured_Caudovirales_phage	7.3e-181	50.4
WP_089691668.1\|2708086_2708806_+	AAA family ATPase	A0A2H4J809	uncultured_Caudovirales_phage	3.3e-88	68.5
WP_089691671.1\|2708808_2709453_+	hypothetical protein	A0A1B1P6Z8	Rhodovulum_phage	1.2e-25	37.2
WP_089691674.1\|2709449_2709836_+	hypothetical protein	A0A0A1IWY8	Pseudomonas_phage	1.3e-27	50.9
WP_089691677.1\|2709832_2710474_+	hypothetical protein	NA	NA	NA	NA
WP_089691680.1\|2710470_2710920_+	hypothetical protein	NA	NA	NA	NA
WP_089691682.1\|2710922_2711555_+	DUF3164 family protein	Q5ZR10	Pseudomonas_phage	6.7e-69	63.5
WP_089691685.1\|2711556_2711826_+	hypothetical protein	NA	NA	NA	NA
WP_089691688.1\|2711908_2712607_+	DUF2786 domain-containing protein	A0A2P9JZH4	Alteromonadaceae_phage	3.9e-78	67.8
WP_089691691.1\|2712603_2713050_+	hypothetical protein	NA	NA	NA	NA
WP_089691695.1\|2713258_2713681_+	regulatory protein GemA	H1ZZD1	Pseudomonas_virus	6.3e-31	56.0
WP_089691698.1\|2713667_2714096_+	hypothetical protein	NA	NA	NA	NA
WP_089691701.1\|2714126_2714459_+	hypothetical protein	NA	NA	NA	NA
WP_089691704.1\|2714462_2714816_+	hypothetical protein	NA	NA	NA	NA
WP_089691786.1\|2715030_2715321_+	hypothetical protein	A0A2P1A4C6	Alteromonadaceae_phage	1.5e-23	62.8
WP_170834154.1\|2715322_2715481_+	hypothetical protein	NA	NA	NA	NA
WP_089691789.1\|2715528_2716143_+	transglycosylase SLT domain-containing protein	A0A2P9JZI1	Alteromonadaceae_phage	4.0e-74	66.5
WP_089691706.1\|2716127_2716481_+	hypothetical protein	A0A2P9JZI2	Alteromonadaceae_phage	2.6e-09	40.2
WP_089691710.1\|2716477_2716786_+	hypothetical protein	A0A2P9JZI3	Alteromonadaceae_phage	7.2e-08	42.0
WP_089691714.1\|2716795_2717140_+	DUF2730 family protein	NA	NA	NA	NA
WP_089691717.1\|2717139_2717445_+	hypothetical protein	A0A2P9JZI6	Alteromonadaceae_phage	7.0e-40	78.6
WP_089691720.1\|2717447_2717999_+	DUF3486 family protein	A0A2P9JZI7	Alteromonadaceae_phage	4.5e-53	58.9
WP_089691723.1\|2717995_2719495_+	hypothetical protein	A4JWJ4	Burkholderia_virus	3.6e-129	50.8
WP_089691728.1\|2719488_2721096_+	DUF935 domain-containing protein	J9SVY0	Pseudomonas_phage	1.8e-110	42.7
WP_089691730.1\|2721070_2722252_+	hypothetical protein	A0A1B0T6H8	Thiobacimonas_phage	8.5e-57	46.7
WP_174788288.1\|2722369_2722810_+	phage virion morphogenesis protein	A0A2H4J9E5	uncultured_Caudovirales_phage	1.5e-11	31.0
WP_174788289.1\|2722988_2724317_+	hypothetical protein	NA	NA	NA	NA
WP_174788290.1\|2724426_2725464_+\|protease	protease (I) and scaffold (Z) protein	A0A0M5N0Q6	Ralstonia_phage	6.1e-43	38.5
WP_174788291.1\|2725498_2725936_+	hypothetical protein	A0A1B0T6E4	Thiobacimonas_phage	1.9e-30	54.4
WP_174788292.1\|2725950_2726853_+\|head	Mu-like prophage major head subunit gpT family protein	M4SRT6	Rhodobacter_phage	1.3e-68	42.8
WP_174788293.1\|2726918_2727416_+	hypothetical protein	NA	NA	NA	NA
WP_174788294.1\|2727419_2727830_+	DUF1320 domain-containing protein	A0A2D1GNP0	Pseudomonas_phage	1.6e-10	35.7
WP_174788295.1\|2727840_2728137_+	hypothetical protein	NA	NA	NA	NA
WP_174788296.1\|2728136_2728580_+	hypothetical protein	NA	NA	NA	NA
WP_174788297.1\|2728576_2729533_+	hypothetical protein	G8EY04	Synechococcus_phage	5.1e-44	36.4
WP_174788298.1\|2729594_2729918_+	hypothetical protein	NA	NA	NA	NA
WP_174788482.1\|2729914_2730283_+	DUF1799 domain-containing protein	D6PGB0	uncultured_phage	2.3e-05	36.0
WP_174788299.1\|2730300_2735958_+	EF-hand domain-containing protein	A0A2I7RB22	Vibrio_phage	1.2e-39	32.3
WP_174788300.1\|2735954_2737391_+	hypothetical protein	F8TV92	EBPR_siphovirus	3.5e-36	28.2
WP_174788301.1\|2737392_2738268_+	hypothetical protein	NA	NA	NA	NA
WP_174788302.1\|2738267_2739827_+\|tail	tail fiber protein	E3T4R8	Cafeteria_roenbergensis_virus	3.7e-07	30.6
2741346:2741391	attR	NA	NA	NA	NA

DBSCAN-SWA_5

4633740 : 4705063

uncultured_Caudovirales_phage(22.5%)

portal,tail,transposase,plate,protease,capsid,terminase,integrase,head

attL 4625866:4625883|attR 4687734:4687751

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4625866:4625883	attL	NA	NA	NA	NA
WP_022519777.1\|4633740_4634685_+\|transposase	IS5 family transposase	Q38213	Escherichia_phage	1.8e-94	54.8
WP_053857146.1\|4635351_4636206_-	phosphate/phosphite/phosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_022520790.1\|4636468_4638139_+	5'-nucleotidase C-terminal domain-containing protein	A0A1M7XTW9	Cedratvirus	2.4e-25	27.0
WP_022520789.1\|4638163_4638532_-	DUF1428 domain-containing protein	NA	NA	NA	NA
WP_022520788.1\|4638553_4638916_-	YciI family protein	NA	NA	NA	NA
WP_022520787.1\|4638912_4639758_-	VOC family protein	NA	NA	NA	NA
WP_022520786.1\|4639840_4641070_-	RNA polymerase sigma factor	NA	NA	NA	NA
WP_022520785.1\|4641160_4642216_-	sn-glycerol-3-phosphate import ATP-binding protein UgpC	G9BWD6	Planktothrix_phage	2.5e-20	32.7
WP_022520784.1\|4642217_4643060_-	sn-glycerol-3-phosphate ABC transporter permease UgpE	NA	NA	NA	NA
WP_022520783.1\|4643078_4643963_-	sn-glycerol-3-phosphate ABC transporter permease UgpA	NA	NA	NA	NA
WP_022520782.1\|4644053_4645379_-	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA
WP_022520781.1\|4645595_4646759_+	acetylornithine deacetylase	NA	NA	NA	NA
WP_022520780.1\|4646840_4647152_-	hypothetical protein	NA	NA	NA	NA
WP_022520779.1\|4647336_4647810_+	SEC-C domain-containing protein	NA	NA	NA	NA
WP_022520778.1\|4647802_4648102_+	GIY-YIG nuclease family protein	NA	NA	NA	NA
WP_022520777.1\|4648137_4649172_+	histone deacetylase family protein	A0A2K9L4C2	Tupanvirus	1.8e-39	35.6
WP_022520776.1\|4649274_4649610_+	hypothetical protein	NA	NA	NA	NA
WP_022520774.1\|4649840_4651697_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	3.6e-17	33.5
WP_089690947.1\|4651747_4653277_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_009287871.1\|4653371_4654295_+	ABC transporter permease	NA	NA	NA	NA
WP_009287872.1\|4654297_4655152_+	ABC transporter permease	NA	NA	NA	NA
WP_022520771.1\|4655148_4656936_+	hypothetical protein	NA	NA	NA	NA
WP_022520770.1\|4656988_4658680_+	VRR-NUC domain-containing protein	NA	NA	NA	NA
WP_022520769.1\|4658676_4660965_+	ATP-dependent DNA helicase	NA	NA	NA	NA
WP_009287879.1\|4660986_4661769_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA
WP_082116912.1\|4661779_4662964_-	MFS transporter	NA	NA	NA	NA
WP_022520767.1\|4663082_4663262_-	hypothetical protein	NA	NA	NA	NA
WP_138800243.1\|4663258_4663324_-	type II toxin-antitoxin system HigB family toxin	NA	NA	NA	NA
WP_022520766.1\|4663379_4663535_-	DUF4113 domain-containing protein	NA	NA	NA	NA
WP_022520765.1\|4663868_4664288_-	type II toxin-antitoxin system HicB family antitoxin	A0A0R6PJ17	Moraxella_phage	6.1e-34	53.3
WP_082116825.1\|4664326_4664509_-	type II toxin-antitoxin system HicA family toxin	D6R431	Bacillus_phage	2.7e-15	63.8
WP_022520764.1\|4664838_4665195_-	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
WP_174788353.1\|4665763_4667110_+\|integrase	site-specific integrase	Q9T1Z2	Lactococcus_phage	3.4e-09	30.9
WP_174788354.1\|4667104_4667413_-	hypothetical protein	NA	NA	NA	NA
WP_174788355.1\|4667409_4667730_-	hypothetical protein	A0A1J0GUZ1	Halomonas_phage	5.7e-16	48.8
WP_174788356.1\|4667868_4668090_-	TraR/DksA family transcriptional regulator	B5TA71	Burkholderia_phage	8.2e-06	62.2
WP_174788357.1\|4668104_4670423_-	replication endonuclease	A4JWW0	Burkholderia_virus	2.0e-65	37.1
WP_174788358.1\|4670419_4670665_-	hypothetical protein	NA	NA	NA	NA
WP_174788359.1\|4670661_4671072_-	hypothetical protein	NA	NA	NA	NA
WP_174788360.1\|4671082_4671460_-	hypothetical protein	NA	NA	NA	NA
WP_174788361.1\|4671440_4671836_-	ogr/Delta-like zinc finger family protein	NA	NA	NA	NA
WP_041158940.1\|4671828_4672020_-	hypothetical protein	NA	NA	NA	NA
WP_174788362.1\|4672057_4672261_-	hypothetical protein	NA	NA	NA	NA
WP_174788363.1\|4672296_4672503_-	hypothetical protein	NA	NA	NA	NA
WP_174788364.1\|4672644_4672887_+	hypothetical protein	NA	NA	NA	NA
WP_174788365.1\|4673031_4673697_+	LexA family transcriptional regulator	A0A1C6ZDG7	Pseudomonas_phage	2.2e-17	29.0
WP_174788366.1\|4673762_4674332_+	hypothetical protein	NA	NA	NA	NA
WP_174788367.1\|4674361_4674616_+	DUF4177 domain-containing protein	A0A0A7NPW2	Enterobacteria_phage	9.4e-22	64.6
WP_174788368.1\|4674605_4674812_+	membrane protein insertion efficiency factor YidD	NA	NA	NA	NA
WP_174788369.1\|4675013_4675769_+	hypothetical protein	NA	NA	NA	NA
WP_174788370.1\|4675765_4677085_-	Y-family DNA polymerase	I6RSM4	Salmonella_phage	1.7e-82	41.6
WP_174788371.1\|4677201_4677552_+	hypothetical protein	NA	NA	NA	NA
WP_174788372.1\|4677867_4678323_+	hypothetical protein	NA	NA	NA	NA
WP_174788373.1\|4678322_4678715_+	hypothetical protein	NA	NA	NA	NA
WP_174788374.1\|4678863_4679763_-\|protease	ATP-dependent Clp protease proteolytic subunit	NA	NA	NA	NA
WP_174788375.1\|4679828_4680035_-	hypothetical protein	NA	NA	NA	NA
WP_174788376.1\|4680502_4681468_-	phage late control D family protein	A0A2H4JAV0	uncultured_Caudovirales_phage	1.8e-76	49.5
WP_174788377.1\|4681467_4681917_-\|tail	phage tail protein	A0A2H4JG54	uncultured_Caudovirales_phage	3.8e-34	51.0
WP_174788378.1\|4681939_4685560_-\|tail	phage tail tape measure protein	Q9ZXK0	Pseudomonas_virus	2.7e-85	30.2
WP_159176383.1\|4685571_4685709_-\|tail	GpE family phage tail protein	NA	NA	NA	NA
WP_174788379.1\|4685750_4686119_-\|tail	phage tail assembly protein	A4PE51	Ralstonia_virus	1.3e-19	57.6
WP_174788380.1\|4686181_4686688_-\|tail	phage major tail tube protein	Q9ZXK3	Pseudomonas_virus	4.8e-41	47.9
WP_174788381.1\|4686722_4687895_-\|tail	phage tail sheath protein	A0A2H4JCP8	uncultured_Caudovirales_phage	2.4e-152	66.2
4687734:4687751	attR	NA	NA	NA	NA
WP_174788382.1\|4688709_4689321_+	hypothetical protein	NA	NA	NA	NA
WP_174788383.1\|4689389_4689869_-	hypothetical protein	B0ZSG6	Halomonas_phage	2.5e-39	66.4
WP_174788384.1\|4689880_4690765_-	hypothetical protein	NA	NA	NA	NA
WP_174788385.1\|4690761_4691136_-	hypothetical protein	NA	NA	NA	NA
WP_174788386.1\|4691132_4691387_-	hypothetical protein	NA	NA	NA	NA
WP_174788387.1\|4691379_4691739_-	hypothetical protein	B0ZSG2	Halomonas_phage	2.1e-27	55.3
WP_174788388.1\|4691735_4692263_-\|tail	phage tail protein	A0A219YAZ4	Aeromonas_phage	4.7e-15	33.1
WP_174788389.1\|4692259_4693210_-\|tail	phage tail protein I	V9IQK7	Stenotrophomonas_phage	1.3e-26	40.2
WP_174788390.1\|4693206_4694106_-\|plate	baseplate J/gp47 family protein	S4TNY7	Salmonella_phage	1.6e-71	53.3
WP_174788391.1\|4694102_4694441_-	GPW/gp25 family protein	A0A2H4JE52	uncultured_Caudovirales_phage	1.2e-24	52.7
WP_174788392.1\|4694443_4694719_-	PAAR domain-containing protein	K4ICQ1	Acidithiobacillus_phage	2.7e-14	46.3
WP_174788393.1\|4694728_4695073_-	hypothetical protein	NA	NA	NA	NA
WP_174788394.1\|4695099_4695576_-\|plate	phage baseplate assembly protein V	A4PE41	Ralstonia_virus	4.2e-23	38.5
WP_174788395.1\|4695651_4696110_-	phage virion morphogenesis protein	A0A2H4J927	uncultured_Caudovirales_phage	1.2e-35	52.3
WP_174788396.1\|4696106_4696601_-\|tail	phage tail protein	A0A2H4J906	uncultured_Caudovirales_phage	1.7e-19	39.7
WP_174788397.1\|4696712_4697135_-	hypothetical protein	NA	NA	NA	NA
WP_174788398.1\|4697131_4697617_-	lysozyme	A0A0U4JP67	Pseudomonas_phage	2.7e-41	59.9
WP_174788399.1\|4697606_4697813_-	hypothetical protein	A0A2H4J9Q9	uncultured_Caudovirales_phage	6.7e-10	50.7
WP_174788400.1\|4697819_4698035_-\|tail	tail protein X	F1BUQ5	Erwinia_phage	4.5e-09	43.3
WP_174788401.1\|4698031_4698493_-\|head	head completion/stabilization protein	A0A2H4JCS4	uncultured_Caudovirales_phage	6.5e-21	43.2
WP_174788402.1\|4698607_4699288_-\|terminase	terminase	E5FFI5	Burkholderia_phage	5.6e-45	46.2
WP_174788403.1\|4699297_4700314_-\|capsid	phage major capsid protein, P2 family	Q9ZXM3	Pseudomonas_virus	1.0e-111	59.6
WP_174788404.1\|4700368_4701190_-\|capsid	GPO family capsid scaffolding protein	A0A2H4J928	uncultured_Caudovirales_phage	3.1e-58	48.7
WP_174788488.1\|4701335_4703126_+\|terminase	terminase	A0A077K8Q7	Ralstonia_phage	1.5e-206	57.5
WP_174788405.1\|4703115_4704177_+\|portal	phage portal protein	E5FFI9	Burkholderia_phage	9.5e-108	56.5
WP_174788489.1\|4704304_4705063_+	DNA adenine methylase	A2I2Y7	Vibrio_virus	5.8e-91	61.2

DBSCAN-SWA_6

5218981 : 5230885

Pseudomonas_phage(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_022519969.1\|5218981_5220271_+	phosphopyruvate hydratase	A0A1X9I5Z8	Streptococcus_phage	8.8e-132	59.1
WP_170834172.1\|5221104_5222445_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.0e-26	29.4
WP_007111508.1\|5222686_5223010_-	ferredoxin family protein	NA	NA	NA	NA
WP_022519968.1\|5223169_5225731_-	DNA mismatch repair protein MutS	A0A1V0SGG8	Hokovirus	9.2e-32	22.4
WP_035538996.1\|5225814_5226354_+	CinA family protein	B5TK85	Pseudomonas_phage	3.8e-36	58.8
WP_009286780.1\|5226483_5227557_+	recombinase RecA	A0A2D1GPX2	Mycobacterium_phage	1.7e-112	61.6
WP_022519966.1\|5227596_5228061_+	regulatory protein RecX	NA	NA	NA	NA
WP_022519965.1\|5228275_5230885_+\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	4.7e-76	36.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. NZ_CP054580

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection