CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	2 crisprs	DinG,WYL,csa3,cas3	4	4
NZ_CP054611	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed3, complete sequence	0 crisprs	NA	0	2
NZ_CP054610	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed2, complete sequence	0 crisprs	NA	0	1
NZ_CP054612	Paenibacillus cellulosilyticus strain KACC 14175 chromosome, complete genome	2 crisprs	csa3,DEDDh,cas3,WYL,DinG	0	6
NZ_CP054609	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed1, complete sequence	1 crisprs	DEDDh,cas3	1	2

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

32636 : 38271

Burkholderia_virus(28.57%)

integrase

attL 33346:33359|attR 39487:39500

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_110042989.1\|32636_32978_-	hypothetical protein	K7R9L4	Vibrio_phage	9.4e-09	36.3
WP_110042988.1\|33123_33417_-	hypothetical protein	A0A0K2CNV4	Brevibacillus_phage	1.3e-14	45.7
33346:33359	attL	NA	NA	NA	NA
WP_110042987.1\|33456_33900_-	hypothetical protein	Q6JIG5	Burkholderia_virus	2.6e-43	59.7
WP_110042986.1\|33910_34453_-\|integrase	site-specific integrase	A3F636	Streptococcus_phage	3.0e-41	48.7
WP_110043275.1\|34485_35013_-	hypothetical protein	NA	NA	NA	NA
WP_110042985.1\|35012_35228_-	hypothetical protein	NA	NA	NA	NA
WP_110042984.1\|35230_35614_-	hypothetical protein	G1JWL3	Mycobacterium_phage	3.5e-20	48.0
WP_110042983.1\|35664_36366_-	hypothetical protein	Q6JII4	Burkholderia_virus	9.6e-16	25.8
WP_174812447.1\|36516_38271_-	DNA cytosine methyltransferase	A0A1I9KFD6	Aeromonas_phage	4.9e-125	53.0
39487:39500	attR	NA	NA	NA	NA

DBSCAN-SWA_2

41352 : 45278

Brevibacillus_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_110042977.1\|41352_41706_-	hypothetical protein	A0A0K2CYJ0	Paenibacillus_phage	5.2e-10	38.8
WP_174812416.1\|41707_41866_-	hypothetical protein	A0A1C8E9A0	Bacillus_phage	3.8e-05	43.8
WP_110042976.1\|42027_42822_-	ATP-binding protein	A0A0K2CPA5	Brevibacillus_phage	3.3e-65	58.0
WP_174812459.1\|42718_43135_-	hypothetical protein	A0A2P1CD59	Lactobacillus_phage	9.4e-11	44.7
WP_174812465.1\|43097_43559_-	DUF4373 domain-containing protein	S4TZS9	uncultured_phage	7.7e-14	39.8
WP_174812417.1\|43841_44000_-	hypothetical protein	NA	NA	NA	NA
WP_174812418.1\|44127_44304_-	hypothetical protein	NA	NA	NA	NA
WP_110042972.1\|44597_44855_-	helix-turn-helix transcriptional regulator	S5MNZ7	Brevibacillus_phage	6.2e-13	44.9
WP_110042971.1\|45083_45278_-	helix-turn-helix domain-containing protein	U5P0W4	Brevibacillus_phage	2.6e-08	46.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. NZ_CP054613

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CRISPR-Cas detection and classification

Crispr_ID: NZ_CP054613_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP054613_1

1106394-1106569

Orphan

Consensus_repeat	Method
TAAGATACTTCAAAGTATTCTAT	CRISPRCasFinder

3 spacers

The CRISPR arrays of NZ_CP054613_1

>merge|NZ_CP054613|1|1106394-1106569|CRISPRCasFinder
TAGCATACTTCAAAGTACACTAACTTGATGCGAAAACGAGTAGCGGCTATATAAGATACTTCAAAGTATTCTATGTCGATCCAAAAGAGGACAGCTGCAGTTTAAGATACTTCAAAGTATCCTATCTCTTCACATAAGCGGGCAGCGGCGAGTTAAGATACTTTAAAGTACGCTAT

>NZ_CP054613|1|1|1106394-1106569|CRISPRCasFinder
TAGCATACTTCAAAGTACACTAA	CTTGATGCGAAAACGAGTAGCGGCTATA
TAAGATACTTCAAAGTATTCTAT	GTCGATCCAAAAGAGGACAGCTGCAGTT
TAAGATACTTCAAAGTATCCTAT	CTCTTCACATAAGCGGGCAGCGGCGAGT
TAAGATACTTTAAAGTACGCTAT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054613.1\|WP_110046057.1\|1101591_1102671_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
NZ_CP054613.1\|WP_110046054.1\|1106658_1108929_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225117
NZ_CP054613.1\|WP_110046056.1\|1102895_1104053_+\|virulence-factor	unknown	unknown	gnl\|CDD\|379361
NZ_CP054613.1\|WP_110046063.1\|1092667_1094992_-\|alpha-xylosidase	unknown	unknown	gnl\|CDD\|236731
NZ_CP054613.1\|WP_110046059.1\|1098952_1099624_-\|zinc-ribbon-domain-containing-protein	unknown	unknown	gnl\|CDD\|372305
NZ_CP054613.1\|WP_110046048.1\|1115966_1117034_-\|LLM-class-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274934
NZ_CP054613.1\|WP_174812832.1\|1105102_1106281_-\|transglutaminase	unknown	unknown	gnl\|CDD\|227604
NZ_CP054613.1\|WP_146216911.1\|1111944_1112409_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054613.1\|WP_110046050.1\|1112828_1113752_-\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226666
NZ_CP054613.1\|WP_110046049.1\|1113975_1115010_+\|dienelactone-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|372264
NZ_CP054613.1\|WP_110046053.1\|1109093_1110704_-\|extracellular-solute-binding-protein	unknown	unknown	gnl\|CDD\|270298
NZ_CP054613.1\|WP_110046060.1\|1098265_1098760_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054613.1\|WP_110046058.1\|1099741_1101364_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|237894
NZ_CP054613.1\|WP_174812834.1\|1118478_1120587_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223521
NZ_CP054613.1\|WP_110046052.1\|1110822_1111710_-\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP054613.1\|WP_110046062.1\|1095160_1096075_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
NZ_CP054613.1\|WP_110046061.1\|1096391_1097480_-\|C40-family-peptidase	unknown	unknown	gnl\|CDD\|223862
NZ_CP054613.1\|WP_174812831.1\|1098094_1098253_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054613.1\|WP_174812833.1\|1115660_1115825_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054613.1\|WP_110046047.1\|1117030_1118482_-\|DHA2-family-efflux-MFS-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|129794

Protein	Function_ID	Function_description	E-value
NZ_CP054613.1\|WP_110046057.1\|1101591_1102671_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	1.66655e-71
NZ_CP054613.1\|WP_110046054.1\|1106658_1108929_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	1.42532e-25
NZ_CP054613.1\|WP_110046053.1\|1109093_1110704_-\|extracellular-solute-binding-protein	gnl\|CDD\|270298	cd13580, PBP2_AlgQ_like_1, Periplasmic-binding component of alginate-specific ABC uptake system-like; contains the type 2 periplasmic binding fold. This subgroup includes uncharacterized periplasmic-binding proteins that are closely related to high molecular weight (HMW) alginate bining proteins (AlgQ1 and AlgQ2) found in gram-negative soil bacteria. The HMW alginate uptake system is composed of a novel pit formed on the cell surface and a pit-dependent ATP-binding cassette (ABC) transporter in the inner membrane. The transportation of HMW alginate from the pit to the ABC transporter is mediated by periplasmic HMW alginate-binding proteins (AlgQ1 and AlgQ2). Alginate is an anionic polysaccharide that is made up of alpha-L-mannuronate and its 5'-epimer, alpha-L-guluronate. Alginate is present in the cell walls of brown seaweeds, where it forms a viscous gum by binding water. Alginate is also produced by two bacteria genera Pseudomonas and Azotobacter. AlgQ1 and AlgQ2 belong to the type 2 periplasmic-binding fold superfamily. PBP2 is comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. However, unlike other bacterial periplasmic-binding proteins that deliver small solutes to ABC transporters, AlgQ1/2 can bind a macromolecule and may have specificity for either sugar or a certain type of polysaccharide.	6.50524e-41
NZ_CP054613.1\|WP_110046063.1\|1092667_1094992_-\|alpha-xylosidase	gnl\|CDD\|236731	PRK10658, PRK10658, putative alpha-glucosidase; Provisional.	0
NZ_CP054613.1\|WP_110046059.1\|1098952_1099624_-\|zinc-ribbon-domain-containing-protein	gnl\|CDD\|372305	pfam12773, DZR, Double zinc ribbon. This family consists of a pair of zinc ribbon domains.	5.8998e-07
NZ_CP054613.1\|WP_110046048.1\|1115966_1117034_-\|LLM-class-flavin-dependent-oxidoreductase	gnl\|CDD\|274934	TIGR04036, family_protein, putative luciferase-like monooxygenase, FMN-dependent, CE1758 family. This tightly conserved subfamily of the bacterial luciferase-like monooxygenase (LLM) family, with members showing > 60 % pairwise sequence identity, includes proteins from both species with and species without the ability to make coenzyme F420. Therefore, the like cofactor is FMN rather than F420. The presence of three members in Kineococcus radiotolerans SRS30216 and two in Saccharopolyspora erythraea NRRL 2338 suggest closely related (subfamily) rather than exactly conserved (equivalog) function. Gene neighborhoods around members are not conserved. [Unknown function, Enzymes of unknown specificity].	5.886e-96
NZ_CP054613.1\|WP_174812832.1\|1105102_1106281_-\|transglutaminase	gnl\|CDD\|227604	COG5279, CYK3, Uncharacterized protein involved in cytokinesis, contains TGc (transglutaminase/protease-like) domain [Cell division and chromosome partitioning].	6.21884e-20
NZ_CP054613.1\|WP_110046061.1\|1096391_1097480_-\|C40-family-peptidase	gnl\|CDD\|223862	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane].	5.687e-16
NZ_CP054613.1\|WP_110046050.1\|1112828_1113752_-\|sugar-ABC-transporter-permease	gnl\|CDD\|226666	COG4209, LplB, ABC-type polysaccharide transport system, permease component [Carbohydrate transport and metabolism].	6.21714e-88
NZ_CP054613.1\|WP_110046049.1\|1113975_1115010_+\|dienelactone-hydrolase-family-protein	gnl\|CDD\|372264	pfam12715, Abhydrolase_7, Abhydrolase family. This is a family of probable bacterial abhydrolases.	6.42662e-12
NZ_CP054613.1\|WP_110046052.1\|1110822_1111710_-\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	5.25823e-64
NZ_CP054613.1\|WP_110046058.1\|1099741_1101364_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|237894	PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional.	0
NZ_CP054613.1\|WP_174812834.1\|1118478_1120587_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	1.9411e-169
NZ_CP054613.1\|WP_110046062.1\|1095160_1096075_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	4.0419e-28
NZ_CP054613.1\|WP_110046056.1\|1102895_1104053_+\|virulence-factor	gnl\|CDD\|379361	pfam13769, Virulence_fact, Virulence factor. This domain is found in conserved virulence factors. It is often found in association with pfam02985 and pfam08712.	2.77701e-25
NZ_CP054613.1\|WP_110046047.1\|1117030_1118482_-\|DHA2-family-efflux-MFS-transporter-permease-subunit	gnl\|CDD\|129794	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily. This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. [Cellular processes, Toxin production and resistance, Transport and binding proteins, Other].	1.77259e-71

>NZ_CP054613.1|WP_174812832.1|1105102_1106281_-|transglutaminase
MRVTRIVLLAVIAGVLGGSQLFNYWKQKVRPIAVGAVAGTEAFAASAEVKNEQSLAEYIKKQLQTHTDRVSVAMLGSDHSEAALKKALAAATGTDDYIAYIIDSYYYTIRETSIRTDIDLRIRYRETAEQTAEVNRITDRALRNIINDQMNDHEKVKAIHDWVVARVDYDQALQKYTAYEALTTGRAVCQGYALLMYNMLTKAGIENVIAAGTVNTGEHAWNIVKLDGQWYHLDATWDDAAIASTTGVDAAQGAILRSQYRYYLLTDSQMRADHQWTKTYPKATTVYADALRKRMQTVPLEAQRLSKLEAAIGLDWLQSDRTVTSVTALANKLSEMSAGGKRELQVRYTRGDSWNEDIRAAVRQAGIRDGYQVRSTPYGTDGSVLLEVKFTA
>NZ_CP054613.1|WP_110046056.1|1102895_1104053_+|virulence-factor
MKLLSIEPTPSPNSMKLNVDETLPRGHRHTYLPDKSEGASEIIRALLAINGVKSLFRTADFIALDRKPNADWQSILSEARRLLAGDDTDAAAAGVGAAPSADGFGEAHVLVQFYRGIPMQIRVRIGEREVRAAMAQRFTDAVQAAAGTTFIRERKLEEFGIRYGEPEEIAADIVRELEAAYTEERIASLVAASQAQGPDAVVEAPIRPTPLTADEVLAKFDAPDWQERYAALDRLAESTPEALPMLQRALADENASIRRLAVVYLGDLRSAEAMPLLFTALKDKSVSVRRTAGDTLSDIGDTAAIEPMIESLRDKNKLVRWRAARFLYEAGDERALDVLREAVNDAEFEISLQASMAVERIERGEEAAGSVWQQMTQRNRGNDAE
>NZ_CP054613.1|WP_110046057.1|1101591_1102671_-|Gfo/Idh/MocA-family-oxidoreductase
MTIKSPSRIRFGIIGAGAIGAVHMETLNKLGDVAELRAVTDTYLPLAEKRAEEHSIPTIHVSPEALIADPDIDAVVIAVPNQFHAPLTIAALEAGKHVLLEKPMAISSAKAKEIVDAQQRTGKTVMIAQQMRFTGLSRAVKALIDDGVLGRVYNIKTGWIRKKGIPGWGSWFTQMEMAGGGPLIDIGVHMLDLSLHLVDSPKPVSVFGTTYAEFGPHKRGIGNWGTPNWEGIYNVEDLATALIKLDNGATLSLDVSWAAHAADLTDEPFIHLMGTEAGVSIVGNKATLVKHENDEVVMSEIEPLDSVNERELVAKHFITSIHEGTTPISSVITGYTNNRILDAIYESSANGGEVKLNWD
>NZ_CP054613.1|WP_110046058.1|1099741_1101364_-|ATP-binding-cassette-domain-containing-protein
MISTTGVSLRYGKRPLFEDVNIKFTPGNCYGLIGANGAGKSTFLKILSGEIEPNTGEVHIAPGERMAVLKQNHYEYDEFPVIETVMMGHKRLYDVMQEKNALYAKAEFTDEDGIRAGELEAEFAEMNGWEAESEAAEMLNGLGITPELHDKQMKELGGNEKVRVLLAQALFGSPNILLLDEPTNHLDMESIHWLENFLAKFEGTVIVVSHDRHFLNTVCTHIADIDFGKIQMYVGNYDFWYESSQLALTLQRDQNKKKEDKIKELQAFIQRFSANKSKSKQATSRKKMLDKISLDDIRPSNRKYPFINFKPEREAGKQLLLVEGLSKTIDGEKILDNLTFTVNKGDKIALVGPNGLAKTVLYQIIAGELEADSGTYQWGITTTQAYFPKDNSAYFDGVDLTLVDWLRQFSKEQDETFIRGFLGRMLFAGDEGMKKASVLSGGEKVRCMLSKMMLSGSNVLIMDEPTNHLDLESITALNNGMIDFDGTMLFTSHDHQFVQTVANRIFEITPNGLIDRTMSYDEYLENADVQAMRARMYPAE
>NZ_CP054613.1|WP_110046059.1|1098952_1099624_-|zinc-ribbon-domain-containing-protein
MSIFDKMKQGASDAARKAQQTLEIAKLNNQKSSREKDMSKLYSQIGEAVFEAHLSGEHEASAEIIEASCEKLKIMKQEIEMIDHKIQSIKLEKSCTCGTVVPLNAKFCPDCGTRFATEQELKSEMTSGEIRVICPNCDTENELMARYCTDCGHELGKMRPTVLHSNAQVVDPELETYVDPDPVVEVYEEKDQGAHDQEDQLKRREEGNNGGWGRFSFDKYDDK
>NZ_CP054613.1|WP_110046060.1|1098265_1098760_-|hypothetical-protein
MIVHRQTKEHYPVDFHPLTPFDVSTMIRDGSLFSWELQFDWTLYFRFYNIEVYKMVIRGDDEIQGCIAFEVKEDHIYVHLIESAPHNFKGRAFELIGEHLFGFACKCSEDLGFEGAVAFQSKIGPKSVPLMNYYVNRIKAEHLGNGYMIIDGPSAKQLIMIYST
>NZ_CP054613.1|WP_174812831.1|1098094_1098253_-|hypothetical-protein
MNKKSNLVKSLDDVSRLAGGYVKQSLPVENSDRDRVISEALSKRKATRLEKV
>NZ_CP054613.1|WP_110046061.1|1096391_1097480_-|C40-family-peptidase
MLTTSWKKPLLTASMATMLAFGSLLVPAADVFAAQIGTATVQSGVNMRTSPSTSGSIIRMVKKGENLVVLEKTNSYWYKVQDSSGQIGYVSTSSQYLNVTLSSSSNGSTSTSTGTNATIVKSVNFRTGASTSASSMGYLSANEKVTIISVPNSYWYQIVDSKGRTGYVSSQSQYITVTGSLPSSGGSSTSTGSSSSSGSTSSGSSSGSTTETDASRAALIEKVIATGMKYLGTPYEYGSDRNTTTTFDCSDLFRQMYLEGIGLKLPADSRGQGEYVKSKGNAVYDWHQLKRGDILVFMDYKGSKASDYAGIDKSTQRISHDAIYLGDGKILHTYSKESGGVKITSIEGTHWEYRFIYGGSVI
>NZ_CP054613.1|WP_110046062.1|1095160_1096075_+|helix-turn-helix-transcriptional-regulator
MDLYAKNTLREDRLHGDAMLPMAAYLIEREAGEPILDTHWHQEAEFFCVLEGEVQFQIDTEYLVVRAGEAVFIDGGDMHAGHSHNGSPCTFCAIVFDVEWLAGASYDAVQAGFIAPLQEKRRTFPRHIKPDTAWGQAVLGHLHALMEAYDRQALGFEASIKGRLLLIFSEIAGAGQWHKRSAINAAEVVKIDRLKTIIVHMQQHYDRPLRIRELADLVPMSEGQFIRFFKSMTHKTPIDYLNSYRVRRAAELLRDTDRKISDIALEVGFEHVSYFIKVFRKQHKTTPSEYRKESSREVDAADMD
>NZ_CP054613.1|WP_110046063.1|1092667_1094992_-|alpha-xylosidase
MKFHDGNWLVREGFNLKAATQAHEVERNGDELTAYVSPIPIMSRGNMLDTLQLTVKFHSPAPGVIGVKLIHYAGVIERGPKFELTPQSAGHVTITETEEETILTSGNLSAHIRKGQEWSVAFYRGGERLTGSGPRSMAYITEGKERRWLRDELDLGVGEFIYGLGERFTAFVKNGQVVDLWNQDGGTSSEQTYKNIPFYVSNKGYGVFVNQPELVSFEVGSEKVKKVQFSVEGESLEYFVIDGPSIKDVLNKYTDLTGKPALPPAWSFGLWLTTSFTTNYDEATVNSFVEGMAERDLPLHVFHFDCFWMKEYHWTDFKWDERTFPDPVGMLKRLHEKGLKICVWINPYIAQRSRLFEEGKANGYLVKRPNGDVWQWDLWQPGMALVDFTNPAACEWYASYLRDLVDMGVDSFKTDFGERIPTDVVYHDGSDPYKMHNFYTQLYNQVVFNVLEEKLGKGEAALFARSATAGGQKFPVHWGGDCYADYESMAESLRGGLSLGLSGFGFWSHDIGGFENTAPTHVFKRWLQFGLLSSHSRLHGSKSYRVPWAYDQEAVDVTRFFTKLKSRLMPYLFDTAGQATELGLPSQRAMVIEFQNDPTTEFLDRQYMLGDNLLVAPIFSESGDVQYYLPQGGTWTHVLSGETRQPGWYKENYGFDSLPLFARPNSIIAFGANEQRPDYDYSNGVDFNVYALEDGRTATATVRDIKGAVETTVAIAREGKSITVSLQGSGKAFSVTLNSTGEIASANGASATVDGNSVLVPAGENNVTVTITLA
>NZ_CP054613.1|WP_110046054.1|1106658_1108929_-|helix-turn-helix-domain-containing-protein
MRLKHYEDNGKLFIRLLLSITLCIVVTLVVSSAILFTLFNRIALKQVYQSDLAALNQTSKEVVGMTESAQTLSFQLYQNLTISKLMFYAKPSIYDSVAAMQELSNYLNSMPFIKSIYVYNPNSPYVYLSSNSKQNGLLAPSELADQDILKMLDDYQDYKPFTPIPRTIPVDVDSTERQAVYTYLCYDAIGLTDKVNSAIIVNIDAQWINRDIGSHNGQANNGKSFIIDNRGRLLSGDNLLVGRSGDEATTLIHRIVADEDSDYFIDQSGGEKSLVSYTKPDSLEWRYVRITPYSDVTRQVNGIRVLTIAVAAAILAAGLIASFVLSRRLFMPIDRMASRMRTLETEKRNSLLTLRQDILRNLVLGREALNPRPLRRRMDDLGIEFDFQNEYRMALLAIDRFQSFSDSSGPDARVYKYAIMNICYELASQSYKVETVDMDADGVLLLLGNSQAAPFDDQELLESVLRHIQQAILEHLRIGVTIAYTDADSHAVHVHTMYKRVKQAAQHRLFEGYRALIRASDVIMPMLKEYVYPVDKEKRLIESVAAGKVDEAMQLINCMVNETRSHSVQVARWLLSHLTMVLTNVLHSLQRSHAIVFERSPEHMLATSDQPFETLQEAEAVFQALLEEVRDKLAEKRSMRHEDLIKHIHQIIDEHYGDSNLSLNWIADRLDLSPSYVGRIYKQITLNALIDVINSVRMERSIELLEGTHYSVAEIAERIGYTNPSYFYRMFKKHYGVTPTDYRRRIAGDEGKVAKG
>NZ_CP054613.1|WP_110046053.1|1109093_1110704_-|extracellular-solute-binding-protein
MLRTRKLWMSVLSVMLVLTVVLSGCGKSDDSKDTASNTTDNTGDTKTDTTKTDTPKEDDAAKTGIDTSKPVELQFYMLGDAPKDLSKIQDLVNQMAKEELNTTVKFNYTTWTDWDQKYKLLLSSGQPIDLIFTADWTQFQSYAKKGAFQDITDILPKAAPELQKYVPADMWDAVKIDGKIYTVPATYKEYVTLGFVYREDLRVKYNLPKPVDMATFEEYLDGIKKNEPDMMPLSMNSNVRDNLIAPIRDLTHDAIGATPYGLGITYKDPSNVYSYWGSDEQVQDLTIAQRWQQKGFFAKNVLNDKDTLQEPVVSGKAAAILGDNPTRFNDTRLKMKSAHPDWELAYFPFPLAKGYATPVHPIHNGFAVPKSSKNAERALAFYEKMVLDKRYNQLTEYGVEGTNYKVTDGYYEMIGDSTSNGFPRESMNGWAWRNPEYMLFDKDFDGVKDIFASLDKIQSPDKFTGFAEDYTPYQAEKAAVEQVESQYFAPLYAGLVDNIQEGLQTAMSKAKQAGLEKIHEEYKKQWEQYVTTNGIK
>NZ_CP054613.1|WP_110046052.1|1110822_1111710_-|carbohydrate-ABC-transporter-permease
MSVTPSDRLFRTLAYTVLIIGSLLCLFPFLLVISASLTQNESIVKHGFHLIPKVFSLEGYRMVFRFPDQVLRAYKVTTITTVVGTLLGLFLITMTGYVLQRKDFKYRNAFSFYIYFTTLFGGGLVPWYILITKYLKLTDTYTVLIFPGLMTPFLIILMKNFIRSAIPDELFESSKIDGANDFKIYYRIVLPLSMPGIATVGLFLALAYWNDWFLSSLFINDQHMYQLQFYLYNVINTISFVTQMGAGTGVSLGGDIPTESTKMAMALVVTGPILLLYPFVQRYFVKGLTIGAVKG
>NZ_CP054613.1|WP_146216911.1|1111944_1112409_-|hypothetical-protein
MPKVAQRRQPRPRSGDIAQRWTVLACSDAACPKSRSDANQGRAAATSHSDGQHLLAATLYAQSRAATPTKAAAVTSHSDGQHLLAATLHAQSRAATPKEGRAAAGLRVAQRRPQQHASPSRRMATEARAAKGSAASPSTTVVWGDGRAKPSPRR
>NZ_CP054613.1|WP_110046050.1|1112828_1113752_-|sugar-ABC-transporter-permease
MLRKRGFVYELVKNRLMFLMLLPALIFFLINSYIPMVGIYYAFTRFDFNTNLFNSEFIGFENFKFLWRSGILKRLTLNTLGYNLAFIVLSNVFAIALAVLVSELKLKWFKKLTQSVLFLPYFISFVILSVIVYNLFNYENGFLNTTLKALHMESVDVYNTPWVWVPLIVIFYLWKNLGYSMIIYLAAITGISEEYYEAAKIDGANIFGRIWHITIPMLKTTFIVLLLFALGSIMKGQFDLFYQLVGNNGVLYNATDILDTYVYRSLKVTFDMGMATSAGLYQSAFGFVLVMTVNYIIRKINDDYALF
>NZ_CP054613.1|WP_110046049.1|1113975_1115010_+|dienelactone-hydrolase-family-protein
MRQGDAALARWYEEQKVVREQRAAQQTAEERKLGLLGLLHQSLGEFERTSGFEPVLLERTECDGYIRERVELSAVSGLAFGAYVLIPEGASGRLPGVVAVHGHGYGSRQICGMTADGQWDTTSAGGHSHFAVQLVKRGMIVIAPDVIGFGERRLESDIANDPNAPNSCYRMATKLLMLGKTLTGLRVTEIFGALDYFMTRPDVDPARIGIAGFSGGSVIGYTAAALDQRIGAALLIGYPNTFKDSIWDIRHCICNYTPGLLSEAELPELLGLIAPRPLFLESGSNDPIFPAEGFERAAAELRRLYGEANAEDRLAYDLFEGGHEVSGRQSFDWLKQQLEAIPIL
>NZ_CP054613.1|WP_174812833.1|1115660_1115825_-|hypothetical-protein
MPINVGTFEKLNGQPFAILLAGLNELTSAGAHTDGKKDRDRCSLQLAVNGCSRA
>NZ_CP054613.1|WP_110046048.1|1115966_1117034_-|LLM-class-flavin-dependent-oxidoreductase
MKFIWFSLVMNLRNPVTGEQFGTTEKFENIIKQAQLAEELGFDGYGIGERHGDPFLSSSPPVLLTAIAARTSRIRLLTAVTVLSVLDPIRVAEDYATLDHLSGGRLELIIGKGNDPRHYPLFGITEEEQWDSMEERYELLRRLWREENVSWQGRYRPPLDGVTTQPRPLQQPIPIWHGSASSTRSTELAARYGEPIFSSNSFHPQAKYKELIEHYRERLAYYGHDPSKAVVGAGAGSLYIANTTEEAIGRYRPYYDAHQATAAAQHNKSPFTSLEDVIERGPSLVGSAEQIIEKILNYQQAFGHQVLSLSVDGLTEAEQREQMQRFAEDIAPVLRREVPSTVWRDTKTRLSVETV
>NZ_CP054613.1|WP_110046047.1|1117030_1118482_-|DHA2-family-efflux-MFS-transporter-permease-subunit
MRRVPIIPTETPASYPAFWPVLAAIFLGSFAGMYHVVSLNVSLPGFIDIFDTELRIVQWMLTGFTLASGIIVPVSGFAMDRFGCKRLFLLAIGGVTVSSILCALAWNVQTLIAFRIIQGLFCGLIQPVSLALIYRSIKPERQAFALSVWSFSTVLGTTIGPTLSGFLQSVDWHLIFLVTAPVGVVAWAAGYAVLPQDRGNAQAKLDWLGLLLATVGSLLLLLLFGNMSHWGWHSPLTWSLLVAGTACFALFIVQALQSEHPLLQLGLLRNARFALSLTASLIMSFALYSVVYFLPLFLVEMKGLTPFQTGLIFLPAAGCLTAATFASGRWYSRLGPVKLMIAGGSILFITTYYFSGIHAGTSLTAIVVWLAIRNMGTGLAMTPATNASMSSVPQESLGHASAMLNWLRQVFNAMALGICTSLFYSRLAVHQAEQPYKEAYVHSMHDVFLLSSFIVACAIPVSMLLGRRQTAASFRTSKGSESL
>NZ_CP054613.1|WP_174812834.1|1118478_1120587_-|ABC-transporter-ATP-binding-protein
MGALLDIRKLSVDFQTKHGLLTAISEVSFSIQPGETVCLVGESGSGKTVTSKAIMRLIEHESGRITEGSVLLSGQDVAKLPEAELRRIRGKRVAMVFQEPMAAFDPVFTIGQQIAETILRHERASKREAWERGVQLLKRVGIPEPELRMKQYPGELSGGMLQRAMIAMALSCGPELLIADEPTTALDVTIQAQILQLLQELKHELGMSILLITHDLGIAAEIADRVIVMYAGQIVEEGATAELFAQPLHPYTRGLLQSAAPLDSVRGSRLHAIQGAIPSLAALPSGCLFHPRCEYATDRCRTEAPPLIGQAGREAACWHIDTITSAVARSEGVRPEDQRSGLQESFIVTREASSSVIATLSSVFHSTDELHGGQSSSPSTSDDLFEVVNLHKYYPLKRKSLTAPRSYVRAVDDVSFSIRRNETFGLVGESGSGKSTLGRVLLQLEQATSGQIHFQGTDLTSLTAAQLRPLRREMQVIFQDPYGSLSPRWTVGDSIAEPLKVHGVLTARECRERAEELLQLVGLDASSANKYPHEFSGGQRQRIGIARAIALNPSFILADEAVSALDVSVQAQIVNLLQDLQQKLGLTYLFIAHGLQIVRHISDRIGVMYLGKLVEIAPSEELFLRPAHPYTRLLIDSIPQPIPGKRRDTPLLQGEIPSPSNPPSGCRFHTRCPFATARCKEEQPALRPLDDDRYVACHYSLV

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Crispr_ID: NZ_CP054613_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP054613_2

1220848-1220939

Orphan

Consensus_repeat	Method
GTAAGCATACGCTTAGCAATTTGCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP054613_2

>merge|NZ_CP054613|2|1220848-1220939|CRISPRCasFinder
GTAAGCATACGCTTAGCAATTTGCCTTCATCTTCGATACTACTACCTGAAGGCAAATTGCTTGCTTTGTAAGCATTCGCTTAGCAATTTGCC

>NZ_CP054613|2|2|1220848-1220939|CRISPRCasFinder
GTAAGCATACGCTTAGCAATTTGCC	TTCATCTTCGATACTACTACCTGAAGGCAAATTGCTTGCTTT
GTAAGCATTCGCTTAGCAATTTGCC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054613.1\|WP_110044788.1\|1219363_1219648_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054613.1\|WP_110044787.1\|1218415_1218955_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054613.1\|WP_110044781.1\|1211909_1214009_+\|beta-galactosidase	unknown	unknown	gnl\|CDD\|367090
NZ_CP054613.1\|WP_110044794.1\|1229090_1230227_+\|substrate-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|380537
NZ_CP054613.1\|WP_110044792.1\|1226082_1227915_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225519
NZ_CP054613.1\|WP_110044797.1\|1232587_1233802_+\|acyltransferase	unknown	unknown	gnl\|CDD\|376607
NZ_CP054613.1\|WP_110044796.1\|1230918_1232322_-\|threonine-synthase	unknown	unknown	gnl\|CDD\|236418
NZ_CP054613.1\|WP_110044789.1\|1221082_1222063_-\|sugar-ABC-transporter-permease-YjfF	unknown	unknown	gnl\|CDD\|183235
NZ_CP054613.1\|WP_174812839.1\|1214825_1216028_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
NZ_CP054613.1\|WP_110044780.1\|1210709_1211546_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197666
NZ_CP054613.1\|WP_110044790.1\|1223140_1224679_-\|sugar-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224053
NZ_CP054613.1\|WP_174812840.1\|1222055_1223144_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224093
NZ_CP054613.1\|WP_110044868.1\|1219685_1220729_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380532
NZ_CP054613.1\|WP_110044785.1\|1216922_1217420_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|379082
NZ_CP054613.1\|WP_110044793.1\|1227892_1229113_+\|response-regulator	unknown	unknown	gnl\|CDD\|381091
NZ_CP054613.1\|WP_110044782.1\|1214091_1214595_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054613.1\|WP_110044795.1\|1230306_1230744_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|366361
NZ_CP054613.1\|WP_110044791.1\|1224764_1225754_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380532
NZ_CP054613.1\|WP_110044786.1\|1217446_1218262_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054613.1\|WP_110044784.1\|1216008_1216686_+\|response-regulator-transcription-factor	unknown	unknown	gnl\|CDD\|225107

Protein	Function_ID	Function_description	E-value
NZ_CP054613.1\|WP_174812839.1\|1214825_1216028_+\|sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	2.68346e-47
NZ_CP054613.1\|WP_110044781.1\|1211909_1214009_+\|beta-galactosidase	gnl\|CDD\|367090	pfam02449, Glyco_hydro_42, Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyzes the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.	1.2769e-152
NZ_CP054613.1\|WP_110044794.1\|1229090_1230227_+\|substrate-binding-domain-containing-protein	gnl\|CDD\|380537	cd06314, PBP1_tmGBP, periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are members of the type 1 periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).	1.08481e-55
NZ_CP054613.1\|WP_110044797.1\|1232587_1233802_+\|acyltransferase	gnl\|CDD\|376607	pfam01757, Acyl_transf_3, Acyltransferase family. This family includes a range of acyltransferase enzymes. This domain is found in many as yet uncharacterized C. elegans proteins and it is approximately 300 amino acids long.	1.81449e-22
NZ_CP054613.1\|WP_110044796.1\|1230918_1232322_-\|threonine-synthase	gnl\|CDD\|236418	PRK09225, PRK09225, threonine synthase; Validated.	0
NZ_CP054613.1\|WP_110044789.1\|1221082_1222063_-\|sugar-ABC-transporter-permease-YjfF	gnl\|CDD\|183235	PRK11618, PRK11618, inner membrane ABC transporter permease protein YjfF; Provisional.	3.15363e-152
NZ_CP054613.1\|WP_110044792.1\|1226082_1227915_+\|sensor-histidine-kinase	gnl\|CDD\|225519	COG2972, COG2972, Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms].	2.23384e-58
NZ_CP054613.1\|WP_110044780.1\|1210709_1211546_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|197666	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein.	5.742e-26
NZ_CP054613.1\|WP_110044790.1\|1223140_1224679_-\|sugar-ABC-transporter-ATP-binding-protein	gnl\|CDD\|224053	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism].	0
NZ_CP054613.1\|WP_174812840.1\|1222055_1223144_-\|ABC-transporter-permease	gnl\|CDD\|224093	COG1172, AraH, Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components [Carbohydrate transport and metabolism].	1.88217e-66
NZ_CP054613.1\|WP_110044868.1\|1219685_1220729_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|380532	cd06309, PBP1_galactofuranose_YtfQ-like, periplasmic binding domain of ABC-type galactofuranose YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.	2.68966e-124
NZ_CP054613.1\|WP_110044785.1\|1216922_1217420_-\|AAA-family-ATPase	gnl\|CDD\|379082	pfam13238, AAA_18, AAA domain.	1.45009e-06
NZ_CP054613.1\|WP_110044793.1\|1227892_1229113_+\|response-regulator	gnl\|CDD\|381091	cd17536, REC_YesN-like, phosphoacceptor receiver (REC) domain of YesN and related helix-turn-helix containing response regulators. This family is composed of uncharacterized response regulators that contain a REC domain and a AraC family helix-turn-helix (HTH) DNA-binding output domain, including Bacillus subtilis uncharacterized transcriptional regulatory protein YesN and Staphylococcus aureus uncharacterized response regulatory protein SAR0214. YesN is a member of the two-component regulatory system YesM/YesN and SAR0214 is a member of the probable two-component regulatory system SAR0215/SAR0214. Also included in this family is the AlgR-like group of LytTR/AlgR family response, which includes Pseudomonas aeruginosa positive alginate biosynthesis regulatory protein AlgR and Bacillus subtilis sensory transduction protein LytT, among others. REC domains function as phosphorylation-mediated switches within response regulators, but some also transfer phosphoryl groups in multistep phosphorelays.	2.17694e-58
NZ_CP054613.1\|WP_110044795.1\|1230306_1230744_-\|VOC-family-protein	gnl\|CDD\|366361	pfam00903, Glyoxalase, Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily.	5.41946e-10
NZ_CP054613.1\|WP_110044791.1\|1224764_1225754_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|380532	cd06309, PBP1_galactofuranose_YtfQ-like, periplasmic binding domain of ABC-type galactofuranose YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.	8.77971e-137
NZ_CP054613.1\|WP_110044784.1\|1216008_1216686_+\|response-regulator-transcription-factor	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.40384e-71

>NZ_CP054613.1|WP_110044868.1|1219685_1220729_-|ABC-transporter-substrate-binding-protein
MIITLFLLLPVLAGCQGGDPKASTDTGSVTSDTAVLQTDGLSDTGDATPPAAQRPLVLGFSQLGTESDWRNANTRSIKEAATEAGIDLLFDNADQSQQKQIEAVRSFIQRKVDVIAIAPVIETGWEPVLKEAKDAGIPVIISDRSANVSDPSLYVSFIGSDFYEEGQKAGKYLVDKIRGMSGPVGLVELRGTEGSSPSIERGKGFRDQLEKKKANVVLLRSEAADFTFEKGKETMRRFLEEEGANIKVLYAHNDDMALGAVEAIEEYGLRPGKDIIIISVDGTKAGFEMMAAGKINCIVECNPLLGPILMQAVKELAEGRQLPKRISTPESVYTETMAKDEVGKRQY
>NZ_CP054613.1|WP_110044788.1|1219363_1219648_-|hypothetical-protein
MKEMIQTITAQCEKLSEDEMKSVADALSSYFEKPIQSLIPELITFNRDELVVINKIVAGVILTKEYVPDIKGAYERLAGTDLPSTISFGRANGE
>NZ_CP054613.1|WP_110044787.1|1218415_1218955_-|hypothetical-protein
MTMRRNYGVIAVAAGIIWLLIQAQSSDGRSYADGASIITYFWPTLFILPLGIFFHVAYLYKRSKPAAGLLIPGGILLVTGLTCQAGMLFDAWATVWPGFLLAVAFGLFEFYLFGYRGFWLLLPVFVLGGAAVIFFALLSITAIAPFNGLQGLTASLIVLGGLMVLLQRSSGDEDDYRKY
>NZ_CP054613.1|WP_110044786.1|1217446_1218262_-|hypothetical-protein
MKQRQLLFSLIILISIVLVSGCTNDNKESNQSPTTEQFDPSLYFNNETTGKLDDNDNKFSWRSDSDDIIVTADKHKEGEGPDSLSLQNITIAAGGKSYSIKPALNVSKVQSISLSADKKMLAVSFFYGPGSNVFMINLSNGDSVDLNKEIEAQGNGFVESVQAYNWSPKNASLAVAYGDTSSSKIAIVSGSDNKVHNLSTDSYISTAYVLWSLDGSAIDCVSEKPSDQYKLYRMNINEKSAHEVVEISRDDLSKLTEYGPTYFKSSNDATS
>NZ_CP054613.1|WP_110044785.1|1216922_1217420_-|AAA-family-ATPase
MKQKLPLFIVTGASGSGKTYVIDALREILPEFDIFDLDDLVEFIGHDWEKMRNIWLRVARNVAQSGRMTILCGTMMPWDIAKCADYSSFEHVYYLNLHCNAETREQRLRARNWSEEMIETHRDFAEKLLEISHTAYDPPMPTIDTTETDVTVVASRIKEWIHQYV
>NZ_CP054613.1|WP_110044784.1|1216008_1216686_+|response-regulator-transcription-factor
MTTSIDKIKVLLVDDQKMIRQGFSYVIGLQDDMEIVGEAADGREAVKQALALRPDIILMDIQMPNMTGIEASQAIIKQLPDVRIVILTTFNDPDYIYEVIRSGAVGYLLKDADVEDMLEAVRSAYRGEAVYRTDLAAGALSRAISSTYIISDPAGSDTPLLEPLTEREMEILQEMAYGLRNDRIAQKLFISEGTVKSHVHRILQKFGCEDRTQVVVNALRRGMVK
>NZ_CP054613.1|WP_174812839.1|1214825_1216028_+|sensor-histidine-kinase
MDQNNDRRTNIRAAVGAILIAILMHMNDFFTGAPIRIALNILIYATFVSRFLLRDFWRTPRMSIVFVVLAALETAAGIIWFEEKVLIYFLAVIIVTTAIRLSLGPRRVPLLATMITVAGVYAAFGHVNVLSFTSFVIITIFFYINVQSRRQRDAIFEENKRNLVELQEAYTHLQEASVTSMHNAVLDERTRIARDIHDAVGHSLTSLIVQMQALRYMIAKDPAQAEQSLTGMLEVARQGLQDIRTSVHALADDRSVSGLAPLRALLARMEATTAITYDFQADALTEEDVDAADSTLLFSIMQEAITNIVRHARATHVRVRISQKAGRIVLHIRDNGHAVADEPIQEGFGLKMMRARLEEGGGILKVGAGEPHGLEITAELPIGAADTEMREHDNDDNIDR
>NZ_CP054613.1|WP_110044782.1|1214091_1214595_-|hypothetical-protein
MQQIIIILLVCLVGFRIVRRVQRNFSWSELRSNRLTFRIVLLAVIGIIFMTQSGFSIVSMISDIIGILIGAALGIAGATMTVFERRGAELYYKANVWIGTIVTVLFVGRFAYRMYEMMTMSRDRGQNFNFAAGGSHWTSGLMLIMFAYYVVYYVLLMRQGKQVLARS
>NZ_CP054613.1|WP_110044781.1|1211909_1214009_+|beta-galactosidase
MEKALHSRDVLLGVCYYPEHWPETMWEDDFRRMKELGLEYVRMAEFGWALMEPEEGVFDFSLFDRAFALAHRHGLNIIIGTPTATPPAWLTHRYPETLNAQANGISYEHGSRRHYTYNSPKFRELSARIVQRMAEHFAEHPGIVGWQLDNEFNCEVFEFYSAADHTAFREWLKAKYGSLAALNEAWGTVFWSQTYTDWEQVHLTRNVPSDSPNPHLKLDEKRFFSDSVISYAQMQADIVRAAAPRHWVTTNGLFGHLDTHKLTNDMLDFISYDSYPMFGRMFPDGGENPLLDRRFSMSLSNVRSISPNFCIMEQQSGPGGWVNRIEQPSPKPGQLRLWTYQSIAHGADLVVYFRWRTATFGTEMYWHGLHNWDNRPNRRTREVERIAEELRRAGQAIAGSRYEAEVAILRDYDNEWDGEFDKWHGGYEWTSTLSWFKRLQRRHIPNDMLFVNEQTTLDQLNRYQTLIYPHPTIIREETAKLLEAYVQGGGTLIIGCRSGYKDETGRCRMTPMPGPLAPLCGVTVEDFTREEPDGSSPSFTLSSQAFDTFATFTSNGFAETLAVTSPDAIVLGRYDNSSYMFGEPALVENSSGEGRTIYFGGVFSDPLVDQLIDRLGITSPASDLLELPECIELTVRSHDKPIFEGQDSGLRIHFLLNYSGQSASIKVRCGATDLLTGKRYVKGAAELDPYAALALVFDE
>NZ_CP054613.1|WP_110044780.1|1210709_1211546_-|AraC-family-transcriptional-regulator
MIWEHLFMRRPFQPSYVCYPESVGHYAEAPHHTCERQGGQFGYYNLHLVFSGEGWLDYRGKRYTLREGDGFLYRPGAAQQYGASASNPWDIHWVHYEAMPWADLMRDGEDVWLFSFTAAEKLRQLFDQLKEACKESTKEDEAHISALLYELLLTIREHGVSLDNPLLRSAQERIRAAAELIRTRCVEPLTIAELAETSGYSTAHFCRLFRQTTGKTPVEFLTESRVTEAKRMLLSTSRPVKQIAIEAGFGQSSYFIRKFREAESMTPDQYRRLFDSGR
>NZ_CP054613.1|WP_110044789.1|1221082_1222063_-|sugar-ABC-transporter-permease-YjfF
MLKRQHLPVAATIALFILMFMTGSFRYTGFFSAQVLFNLLIDNAFLLIVAIGMTFVIVSGGIDLSVGSMVALTTMLSAGLLQQGGWPAWAVIPFVLAVGALFGAAMGALIHYFKIQPFIVTLAGMFLARGLCYLISINTITIDNGFYTDMAQTKIRFGDYFVSPSVIIALVVLVLAIYIAHYTRFGRTTYAIGGSEQSALLMGLPVARTKIMVYMFSGFCSALGGVVFTFYMLSGYGLHAVGLELDAIAATVIGGTLLTGGVGYVFGTFAGVMIYGVIQTLIVFQGTLSSWWTRIIIGILLFAFIVLQRLFTMRSDRKTGSVEKMA
>NZ_CP054613.1|WP_174812840.1|1222055_1223144_-|ABC-transporter-permease
MTGDTKGRYATGKPTSWLNRTYKHHLFWPMALWMALLLFNLFYSPSFFKVVVREGHLYGSLIDILNFGAPLMLVAIGMTTVIATRGIDLSVGSVVAIAGALACQMISKGSDQNAVSLVIYAVVMALVLSIALGLWNGLLVSITGIQPIIATLILMVAGRGIAQLITDGQIITVSSTPYQYIGAGSLAGLPFSIFLVAIVFAISALLTRRTALGLYIESVGCNPEASRLAGIRAKTVMIIVYMFCGLCAGVAGLILSGNVASADGNNAGLWIELDAILAVVIGGTSLTGGRFYLTGTIVGALMIQTLTTTIYSVGVKPEVTLVVKAVVVMAVCLIQSEPFRKAIISRWKTRRYPAEREVTRHA
>NZ_CP054613.1|WP_110044790.1|1223140_1224679_-|sugar-ABC-transporter-ATP-binding-protein
MAQQTGAEPVLKLTNIHKGFPGVRALSGVDFRLFPGEVHALMGENGAGKSTLIKVLTGVYSIDEGTVEMEGKRLVVHSPQEAQGAGISTVYQEVNLCTNLSVAENIYIGREPRRFGRIQWKEMNRRAAQLLEERLHLRVDVTLPLSEYPVAIQQLVAIARAIDIKAKVLILDEPTSSLDRGEVARLFEVVRKLRGEGMAILFVTHFIDQVYEISDRITILRGGELIAEYKASELPRLELVSRMIGKELTMLDELPKTAGDSRMSDDHAAIVAASGLGRKGAIEPFNLSIGRGEVIGLAGLLGSGRTELARLLYGADRADQGKLHVEGAGKGGVHSPRGAIDAGLAFCPENRKTEGIIEDLTVRENIVVALQATRGWFKTISRKRQNEIAEKYIKTLNIHPPNPEQLVKNLSGGNQQKVILGRWLLTQPKLLILDEPTRGIDIGAKAEIQRLVMTLSREEGMSVLYVSSELEEVLRVSDRIAVLRDRVKVEEIGKEEMDEQRIMKAIAGGGGA
>NZ_CP054613.1|WP_110044791.1|1224764_1225754_-|ABC-transporter-substrate-binding-protein
MNVKRRTKMWTLLSLTLLVLVAAACGKSEDKKTSGSTSDISLGFAQVGAESGWRTANTNSIKDSASEAGFDLKFSDAQQKQENQIKAIRTFIQQKVDVIAFSPVVESGWDTVLKEAKDAGIPVILTDRAVDSKDESLYVTFIGSDFVEEGKKAGQWLSDQYKDASADVNIVELQGTTGSAPAIDRKAGFEEAIKGNSHLKIIASQTGDFTRAKGKEVMQAFLKANPKIDVLYAHNDDMALGAIQAIEAAGLKPGVDIKIISVDAVHDGMQAASEGKINYIVECNPLLGPQLMDAVRDVLAGKTIEKRIVTKEGTFTSEEAKAALPDRKY
>NZ_CP054613.1|WP_110044792.1|1226082_1227915_+|sensor-histidine-kinase
MKLIRWRWSSLRAKLLVMFVLISSVPMTVVGLVSYQKSFATISGHSKASALLEADRLARDIDGLFQDTGKLLELEENPQVLRFLFTQSDTYEDAKSILRTFELYRETYKYEDVLNISMVNLYGRGISERRGVFQLERNPLRNPHFVKLLSEPDQVLNVPPSEALLLDRVDGFEYEDRNVISIMATIKQRITKEVIGFIVIDLDDSIVRKFCDDSLIGKSGYFYVASSAGNPIFMPSAVKSDALPIKPADLGPRLADDREGFVERGVGKPLFVMYSTSQMTGWKIVGQVPLQEIMKDADEIRQLIILSFTLSLAFTISLYFFVTTRLTRPVQVLMNKMRQAAGGYLEAKVKPTGSDEIADLGNSFNIMLGKIRELLDQSIKERENIQKAELRALQAQINPHFLYNTLDSIIWMAEAGKNEQVIRLVQALARFFRIGLNKGMEWVTLKEELDHVRSYLIIQQMRYRDILDYEIVVPDSLLNIRLLKMTLQPLVENALYHGIKNKRGRGTITIAASVDASGNLLLAVEDDGSGMSEQRLVELRELLAKGRLPEKTGEEVSGGFGLHNVHQRIRLYYGEAYGVELYSEAQAGTRVILKIPHRMGGSIYEKSDAG
>NZ_CP054613.1|WP_110044793.1|1227892_1229113_+|response-regulator
MKKVMLVDDEILIRENIRDCIPWEQEGFAYCGDAPDGEVALPLIDQHVPDILITDIKMPFMNGLELSRIVRDKYPEMKIIILSGHDEFEYAREALRLGVEDYCLKPVSAADIIKLLHEVSCKIDRQRQERERLEKLANRLAAQRDGSGGSAGGAERTVSAGVAMDGGTGVAGTAAAVVAPSHVHMDRQRFISFLKVGVPAEADSFIREYLSPLHRIDWSAASYGRYVLNDLTVECWQAARELLRSPELTTEENQRFTQALAEVRSSEDAVRYLLLVAEQFWTWRSQAAGRYSDQLREIKSFIDAHIGNDKLSLQDAAAHVRMSPSHLSKVFAQETGETFIEYVMQMRIRKAMELLLSTNDKTYEVAFKVGYNDAHYFSGVFRKATGMTPRDFRKRGVTGREQHVER
>NZ_CP054613.1|WP_110044794.1|1229090_1230227_+|substrate-binding-domain-containing-protein
MSSMLNANEGQRAVAVEHRRRRQRRGVLDRLALRRSLHGLLAVMLVMLFTTGCWGGHSDEDGSDMATISGLTDPIGGVSTKEVKANVVQDKAVSHNGRTLTFGILYPFAHMFYETITEQAKAAAGPQQVSLLVQAPDEANAEQQIRMMENMINRHVDGIAVDPIDATAMQPVIDKAIAAGIPVICFESDAPGSQRLSFIGADNRLAGQRMGGLLDGLLGGRGMILVETGASHMDSLNKRLEGLRYYLETYTEIQILDVRYNEGSEATAQTDLEQMIDDHPHFDAFIALDPLSVSAAVLVWKAMGLNRHALTFGMMPEIEDAIRNGQLTATVSQYEQEWGAQIVSRLIQAAGGHKLPAFSDTGMTDVTMETLSRAAAEK
>NZ_CP054613.1|WP_110044795.1|1230306_1230744_-|VOC-family-protein
MSEQVVEKKQPFLMDLMTLYLPAKDPYTTAKWYVDIFGFDPNASHHSPLQEGAGLVVLHTASDLTLFFVRSEDKLPLSFNNDEGHNHAVLLFRVKDAEIEELYARLIEHGVPLATEEIVDRGGCGRELAFYDPDGRKIEINTFDT
>NZ_CP054613.1|WP_110044796.1|1230918_1232322_-|threonine-synthase
MQYMSTRGNVSGVGFIDAFLMGLATDGGLLVPQQIPTVSAETLKAWSKLSYQELTLAILDLYTNNEIPADDLKKLVADSYSTFRHPEVTPVTKLKDKLYLLELFHGPTFAFKDIALQFMGQLYTYVARTRNLKINILGATSGDTGASSIEGVRGKEGINICILHPHGKVSKVQELQMTTVTEDNVLNLSVHGNFDDCQRIIKDLFADLDFKSKNNLCAINSINIVRIIAQTVYYFYAYFRVQEQEAGGAEQVSFSVPSGNFGDIFAGYLAKRMGLPVDRLIVATNANNILERFVDTGVYKPDNFRMTHSPSMDIQVASNFERYLYYVLGEDTAAIETLMNAFRSEGNLSVNEETLAKVRSEFGAYGVDNDECLDTIKRFESANGYILDPHSACGVAAAEQRGTGGVIVSLATAHPAKFDEAVQLTGIKQTFPAQIEALFNKPQSFKIVAGETSIIASELVEFFGSRG
>NZ_CP054613.1|WP_110044797.1|1232587_1233802_+|acyltransferase
MSAQPAKTAVQLGQRDRLPEIQLVRAIAIVGVLCVHSTSNATVEMTNSGIYWLYNFINIMAKFGTPTFIFLSSFVLFYNYIDRPIGAGMMKSFYRKRAVGILLPYLLFSILYSIVTHVLYYSDQSLGESLHSFIVKLLTGKAYTHLYFVFINAQFYILFPLVLWLFQKRPRLIAWSIPIGLAIQWGFVLMNKYGMQIANKGSWSPSYFSYYMLGAFIGIQYPRIKQWLSNQRNNTSKLTLQAVGSLAGAWLAAGLAHVWIWYEARLYHTQYNSLLYEGLWNAYSITSALVLLGLAALGVRFGPQWLVRVLTRLGALSFGIYLLHPLLLLAYRHFPLNTGNSMLVHLWYAGGFTLALFGTWIIVGSCARWLPFASALFGQLPAKPKKKAQADNNQTNSYRVPLSR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP054613_1	1.1\|1106417\|28\|NZ_CP054613\|CRISPRCasFinder	1106417-1106444	28	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	1106417-1106444	0	1.0
NZ_CP054613_1	1.2\|1106468\|28\|NZ_CP054613\|CRISPRCasFinder	1106468-1106495	28	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	1106468-1106495	0	1.0
NZ_CP054613_1	1.3\|1106519\|28\|NZ_CP054613\|CRISPRCasFinder	1106519-1106546	28	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	1106519-1106546	0	1.0
NZ_CP054613_2	2.1\|1220873\|42\|NZ_CP054613\|CRISPRCasFinder	1220873-1220914	42	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	1220873-1220914	0	1.0
NZ_CP054613_2	2.1\|1220873\|42\|NZ_CP054613\|CRISPRCasFinder	1220873-1220914	42	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	1220806-1220847	1	0.976
NZ_CP054613_1	1.3\|1106519\|28\|NZ_CP054613\|CRISPRCasFinder	1106519-1106546	28	NZ_CP019037	Massilia putida strain 6NM-7 plasmid unnamed2, complete sequence	338680-338707	5	0.821
NZ_CP054613_1	1.2\|1106468\|28\|NZ_CP054613\|CRISPRCasFinder	1106468-1106495	28	NZ_CP035808	Spirochaeta perfilievii strain P plasmid pSpe, complete sequence	31690-31717	7	0.75
NZ_CP054613_1	1.3\|1106519\|28\|NZ_CP054613\|CRISPRCasFinder	1106519-1106546	28	NC_019849	Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence	1600876-1600903	7	0.75
NZ_CP054613_1	1.3\|1106519\|28\|NZ_CP054613\|CRISPRCasFinder	1106519-1106546	28	NC_017326	Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence	1541080-1541107	7	0.75
NZ_CP054613_1	1.3\|1106519\|28\|NZ_CP054613\|CRISPRCasFinder	1106519-1106546	28	NC_017323	Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence	1146088-1146115	7	0.75
NZ_CP054613_1	1.3\|1106519\|28\|NZ_CP054613\|CRISPRCasFinder	1106519-1106546	28	NZ_CP009146	Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence	1526011-1526038	7	0.75
NZ_CP054613_1	1.3\|1106519\|28\|NZ_CP054613\|CRISPRCasFinder	1106519-1106546	28	NC_018701	Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence	1573396-1573423	7	0.75
NZ_CP054613_1	1.3\|1106519\|28\|NZ_CP054613\|CRISPRCasFinder	1106519-1106546	28	NZ_CP021802	Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence	172480-172507	7	0.75
NZ_CP054613_1	1.3\|1106519\|28\|NZ_CP054613\|CRISPRCasFinder	1106519-1106546	28	NZ_CP021820	Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence	237602-237629	7	0.75
NZ_CP054613_1	1.3\|1106519\|28\|NZ_CP054613\|CRISPRCasFinder	1106519-1106546	28	NZ_CP021831	Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence	157256-157283	7	0.75
NZ_CP054613_1	1.3\|1106519\|28\|NZ_CP054613\|CRISPRCasFinder	1106519-1106546	28	NZ_CP021814	Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence	1469175-1469202	7	0.75
NZ_CP054613_1	1.3\|1106519\|28\|NZ_CP054613\|CRISPRCasFinder	1106519-1106546	28	NZ_CP021810	Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence	697293-697320	7	0.75
NZ_CP054613_1	1.3\|1106519\|28\|NZ_CP054613\|CRISPRCasFinder	1106519-1106546	28	NZ_CP021218	Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence	62004-62031	7	0.75
NZ_CP054613_1	1.3\|1106519\|28\|NZ_CP054613\|CRISPRCasFinder	1106519-1106546	28	NZ_CP026527	Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence	1584154-1584181	7	0.75
NZ_CP054613_1	1.3\|1106519\|28\|NZ_CP054613\|CRISPRCasFinder	1106519-1106546	28	NC_003078	Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence	151078-151105	7	0.75
NZ_CP054613_1	1.3\|1106519\|28\|NZ_CP054613\|CRISPRCasFinder	1106519-1106546	28	NZ_CP019586	Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence	153852-153879	7	0.75
NZ_CP054613_1	1.3\|1106519\|28\|NZ_CP054613\|CRISPRCasFinder	1106519-1106546	28	NZ_CP021799	Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence	218615-218642	7	0.75
NZ_CP054613_1	1.3\|1106519\|28\|NZ_CP054613\|CRISPRCasFinder	1106519-1106546	28	NZ_CP021828	Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence	1401105-1401132	7	0.75
NZ_CP054613_1	1.3\|1106519\|28\|NZ_CP054613\|CRISPRCasFinder	1106519-1106546	28	NZ_CP021823	Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence	1517601-1517628	7	0.75
NZ_CP054613_1	1.3\|1106519\|28\|NZ_CP054613\|CRISPRCasFinder	1106519-1106546	28	NZ_CP021795	Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence	1067217-1067244	7	0.75
NZ_CP054613_1	1.3\|1106519\|28\|NZ_CP054613\|CRISPRCasFinder	1106519-1106546	28	NZ_CP021806	Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence	1105902-1105929	7	0.75
NZ_CP054613_1	1.3\|1106519\|28\|NZ_CP054613\|CRISPRCasFinder	1106519-1106546	28	NZ_CP019484	Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence	360845-360872	7	0.75
NZ_CP054613_1	1.3\|1106519\|28\|NZ_CP054613\|CRISPRCasFinder	1106519-1106546	28	NZ_CP019487	Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence	148441-148468	7	0.75
NZ_CP054613_1	1.3\|1106519\|28\|NZ_CP054613\|CRISPRCasFinder	1106519-1106546	28	NC_020560	Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence	151078-151105	7	0.75

1. spacer 1.1|1106417|28|NZ_CP054613|CRISPRCasFinder matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 0, identity: 1.0

cttgatgcgaaaacgagtagcggctata	CRISPR spacer
cttgatgcgaaaacgagtagcggctata	Protospacer
****************************

2. spacer 1.2|1106468|28|NZ_CP054613|CRISPRCasFinder matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 0, identity: 1.0

gtcgatccaaaagaggacagctgcagtt	CRISPR spacer
gtcgatccaaaagaggacagctgcagtt	Protospacer
****************************

3. spacer 1.3|1106519|28|NZ_CP054613|CRISPRCasFinder matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 0, identity: 1.0

ctcttcacataagcgggcagcggcgagt	CRISPR spacer
ctcttcacataagcgggcagcggcgagt	Protospacer
****************************

4. spacer 2.1|1220873|42|NZ_CP054613|CRISPRCasFinder matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 0, identity: 1.0

ttcatcttcgatactactacctgaaggcaaattgcttgcttt	CRISPR spacer
ttcatcttcgatactactacctgaaggcaaattgcttgcttt	Protospacer
******************************************

5. spacer 2.1|1220873|42|NZ_CP054613|CRISPRCasFinder matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 1, identity: 0.976

ttcatcttcgatactactacctgaaggcaaattgcttgcttt	CRISPR spacer
ttcatcttcgatactactacctgaaggcaaattgcttgcttc	Protospacer
*****************************************.

6. spacer 1.3|1106519|28|NZ_CP054613|CRISPRCasFinder matches to NZ_CP019037 (Massilia putida strain 6NM-7 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.821

ctcttcacataagcgggcagcggcgagt	CRISPR spacer
cccttcacggaagcgggcagcggcgcgc	Protospacer
*.******. *************** *.

7. spacer 1.2|1106468|28|NZ_CP054613|CRISPRCasFinder matches to NZ_CP035808 (Spirochaeta perfilievii strain P plasmid pSpe, complete sequence) position: , mismatch: 7, identity: 0.75

gtcgatccaaaagaggacagctgcagtt	CRISPR spacer
ttgaatccaaaagaggacagttgcaaag	Protospacer
 * .****************.****.

8. spacer 1.3|1106519|28|NZ_CP054613|CRISPRCasFinder matches to NC_019849 (Sinorhizobium meliloti GR4 plasmid pRmeGR4d, complete sequence) position: , mismatch: 7, identity: 0.75

ctcttcacataagcgggcagcggcgagt	CRISPR spacer
tacttcacatgagcgggcagcggccttg	Protospacer
. ********.*************

9. spacer 1.3|1106519|28|NZ_CP054613|CRISPRCasFinder matches to NC_017326 (Sinorhizobium meliloti SM11 plasmid pSmeSM11d, complete sequence) position: , mismatch: 7, identity: 0.75

ctcttcacataagcgggcagcggcgagt	CRISPR spacer
tacttcacatgagcgggcagcggccttg	Protospacer
. ********.*************

10. spacer 1.3|1106519|28|NZ_CP054613|CRISPRCasFinder matches to NC_017323 (Sinorhizobium meliloti BL225C plasmid pSINMEB02, complete sequence) position: , mismatch: 7, identity: 0.75

ctcttcacataagcgggcagcggcgagt	CRISPR spacer
tacttcacatgagcgggcagcggccttg	Protospacer
. ********.*************

11. spacer 1.3|1106519|28|NZ_CP054613|CRISPRCasFinder matches to NZ_CP009146 (Sinorhizobium meliloti strain RMO17 plasmid pSymB, complete sequence) position: , mismatch: 7, identity: 0.75

ctcttcacataagcgggcagcggcgagt	CRISPR spacer
tacttcacatgagcgggcagcggccttg	Protospacer
. ********.*************

12. spacer 1.3|1106519|28|NZ_CP054613|CRISPRCasFinder matches to NC_018701 (Sinorhizobium meliloti Rm41 plasmid pSYMB, complete sequence) position: , mismatch: 7, identity: 0.75

ctcttcacataagcgggcagcggcgagt	CRISPR spacer
tacttcacatgagcgggcagcggccttg	Protospacer
. ********.*************

13. spacer 1.3|1106519|28|NZ_CP054613|CRISPRCasFinder matches to NZ_CP021802 (Sinorhizobium meliloti strain USDA1021 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.75

ctcttcacataagcgggcagcggcgagt	CRISPR spacer
tacttcacatgagcgggcagcggccttg	Protospacer
. ********.*************

14. spacer 1.3|1106519|28|NZ_CP054613|CRISPRCasFinder matches to NZ_CP021820 (Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.75

ctcttcacataagcgggcagcggcgagt	CRISPR spacer
tacttcacatgagcgggcagcggccttg	Protospacer
. ********.*************

15. spacer 1.3|1106519|28|NZ_CP054613|CRISPRCasFinder matches to NZ_CP021831 (Sinorhizobium meliloti strain HM006 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.75

ctcttcacataagcgggcagcggcgagt	CRISPR spacer
tacttcacatgagcgggcagcggccttg	Protospacer
. ********.*************

16. spacer 1.3|1106519|28|NZ_CP054613|CRISPRCasFinder matches to NZ_CP021814 (Sinorhizobium meliloti strain M270 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.75

ctcttcacataagcgggcagcggcgagt	CRISPR spacer
tacttcacatgagcgggcagcggccttg	Protospacer
. ********.*************

17. spacer 1.3|1106519|28|NZ_CP054613|CRISPRCasFinder matches to NZ_CP021810 (Sinorhizobium meliloti strain Rm41 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.75

ctcttcacataagcgggcagcggcgagt	CRISPR spacer
tacttcacatgagcgggcagcggccttg	Protospacer
. ********.*************

18. spacer 1.3|1106519|28|NZ_CP054613|CRISPRCasFinder matches to NZ_CP021218 (Sinorhizobium meliloti RU11/001 plasmid pSymB, complete sequence) position: , mismatch: 7, identity: 0.75

ctcttcacataagcgggcagcggcgagt	CRISPR spacer
tacttcacatgagcgggcagcggccttg	Protospacer
. ********.*************

19. spacer 1.3|1106519|28|NZ_CP054613|CRISPRCasFinder matches to NZ_CP026527 (Sinorhizobium meliloti strain AK21 plasmid pSymB, complete sequence) position: , mismatch: 7, identity: 0.75

ctcttcacataagcgggcagcggcgagt	CRISPR spacer
tacttcacatgagcgggcagcggccttg	Protospacer
. ********.*************

20. spacer 1.3|1106519|28|NZ_CP054613|CRISPRCasFinder matches to NC_003078 (Sinorhizobium meliloti 1021 plasmid pSymB, complete sequence) position: , mismatch: 7, identity: 0.75

ctcttcacataagcgggcagcggcgagt	CRISPR spacer
tacttcacatgagcgggcagcggccttg	Protospacer
. ********.*************

21. spacer 1.3|1106519|28|NZ_CP054613|CRISPRCasFinder matches to NZ_CP019586 (Sinorhizobium meliloti strain CCMM B554 (FSM-MA) plasmid pSymB, complete sequence) position: , mismatch: 7, identity: 0.75

ctcttcacataagcgggcagcggcgagt	CRISPR spacer
tacttcacatgagcgggcagcggccttg	Protospacer
. ********.*************

22. spacer 1.3|1106519|28|NZ_CP054613|CRISPRCasFinder matches to NZ_CP021799 (Sinorhizobium meliloti strain USDA1106 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.75

ctcttcacataagcgggcagcggcgagt	CRISPR spacer
tacttcacatgagcgggcagcggccttg	Protospacer
. ********.*************

23. spacer 1.3|1106519|28|NZ_CP054613|CRISPRCasFinder matches to NZ_CP021828 (Sinorhizobium meliloti strain KH35c plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.75

ctcttcacataagcgggcagcggcgagt	CRISPR spacer
tacttcacatgagcgggcagcggccttg	Protospacer
. ********.*************

24. spacer 1.3|1106519|28|NZ_CP054613|CRISPRCasFinder matches to NZ_CP021823 (Sinorhizobium meliloti strain KH46 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.75

ctcttcacataagcgggcagcggcgagt	CRISPR spacer
tacttcacatgagcgggcagcggccttg	Protospacer
. ********.*************

25. spacer 1.3|1106519|28|NZ_CP054613|CRISPRCasFinder matches to NZ_CP021795 (Sinorhizobium meliloti strain USDA1157 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.75

ctcttcacataagcgggcagcggcgagt	CRISPR spacer
tacttcacatgagcgggcagcggccttg	Protospacer
. ********.*************

26. spacer 1.3|1106519|28|NZ_CP054613|CRISPRCasFinder matches to NZ_CP021806 (Sinorhizobium meliloti strain T073 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.75

ctcttcacataagcgggcagcggcgagt	CRISPR spacer
tacttcacatgagcgggcagcggccttg	Protospacer
. ********.*************

27. spacer 1.3|1106519|28|NZ_CP054613|CRISPRCasFinder matches to NZ_CP019484 (Sinorhizobium meliloti strain B401 plasmid pSymB, complete sequence) position: , mismatch: 7, identity: 0.75

ctcttcacataagcgggcagcggcgagt	CRISPR spacer
tacttcacatgagcgggcagcggccttg	Protospacer
. ********.*************

28. spacer 1.3|1106519|28|NZ_CP054613|CRISPRCasFinder matches to NZ_CP019487 (Sinorhizobium meliloti strain B399 plasmid pSym, complete sequence) position: , mismatch: 7, identity: 0.75

ctcttcacataagcgggcagcggcgagt	CRISPR spacer
tacttcacatgagcgggcagcggccttg	Protospacer
. ********.*************

29. spacer 1.3|1106519|28|NZ_CP054613|CRISPRCasFinder matches to NC_020560 (Sinorhizobium meliloti 2011 plasmid pSymB, complete sequence) position: , mismatch: 7, identity: 0.75

ctcttcacataagcgggcagcggcgagt	CRISPR spacer
tacttcacatgagcgggcagcggccttg	Protospacer
. ********.*************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

24805 : 87214

Bacillus_phage(20.0%)

transposase,tRNA,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_110047226.1\|24805_25942_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	4.7e-89	45.4
WP_110047225.1\|25993_27040_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
WP_110047224.1\|27085_29170_-	SpoIID/LytB domain-containing protein	Q2XU88	Pseudomonas_phage	1.2e-13	37.7
WP_110047223.1\|29226_30234_-	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	9.9e-06	28.8
WP_110047222.1\|30259_30883_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
WP_110047221.1\|30879_31383_-	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA
WP_110047220.1\|31883_32576_-	BofC C-terminal domain-containing protein	NA	NA	NA	NA
WP_174812764.1\|32694_34791_-	LysM peptidoglycan-binding domain-containing protein	A0A222Z0F1	Bacillus_phage	1.5e-08	33.0
WP_110047218.1\|35000_35879_-	prephenate dehydratase	NA	NA	NA	NA
WP_110047217.1\|35875_36850_-	homoserine kinase	NA	NA	NA	NA
WP_110047216.1\|36952_38239_-	homoserine dehydrogenase	NA	NA	NA	NA
WP_110047215.1\|38405_38843_-	ACT domain-containing protein	NA	NA	NA	NA
WP_110047214.1\|39302_40622_-	GTPase ObgE	NA	NA	NA	NA
WP_110047213.1\|40639_41377_-	Spo0B domain-containing protein	NA	NA	NA	NA
WP_110047212.1\|41535_41847_-	50S ribosomal protein L27	NA	NA	NA	NA
WP_110047211.1\|41862_42201_-\|protease	ribosomal-processing cysteine protease Prp	NA	NA	NA	NA
WP_110047210.1\|42213_42525_-	50S ribosomal protein L21	NA	NA	NA	NA
WP_174812929.1\|42755_44006_-	Rne/Rng family ribonuclease	NA	NA	NA	NA
WP_110047209.1\|44084_44966_-\|protease	site-2 protease family protein	NA	NA	NA	NA
WP_110047208.1\|44958_46020_-	M23 family metallopeptidase	NA	NA	NA	NA
WP_110047207.1\|46111_47071_-	D-2-hydroxyacid dehydrogenase	A0A2R8FDS8	Brazilian_cedratvirus	8.8e-28	30.4
WP_110047206.1\|47193_48342_-	rod shape-determining protein RodA	NA	NA	NA	NA
WP_110047205.1\|48349_49144_-	septum site-determining protein MinD	NA	NA	NA	NA
WP_110047204.1\|49149_49815_-	septum site-determining protein MinC	NA	NA	NA	NA
WP_110047203.1\|49948_50476_-	rod shape-determining protein MreD	NA	NA	NA	NA
WP_110047202.1\|50472_51363_-	rod shape-determining protein MreC	NA	NA	NA	NA
WP_110047201.1\|51433_52462_-	rod shape-determining protein	NA	NA	NA	NA
WP_110047200.1\|52508_53198_-	DNA repair protein RadC	NA	NA	NA	NA
WP_110047199.1\|53271_53913_-	septum formation inhibitor Maf	NA	NA	NA	NA
WP_110047198.1\|53960_54203_-	DUF4321 domain-containing protein	NA	NA	NA	NA
WP_110047197.1\|54264_55767_-	SPOR domain-containing protein	NA	NA	NA	NA
WP_110047196.1\|56018_56348_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_110047711.1\|56526_57852_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_174812765.1\|57942_58668_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.7e-47	44.7
WP_110047684.1\|58776_59922_-	copper amine oxidase N-terminal domain-containing protein	NA	NA	NA	NA
WP_110047685.1\|60167_61550_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA
WP_110047686.1\|61557_62946_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA
WP_146216943.1\|63304_65965_-\|tRNA	valine--tRNA ligase	A0A1V0SK04	Klosneuvirus	1.7e-161	41.5
WP_110047711.1\|66458_67784_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
WP_110047140.1\|67968_69909_-	DNA mismatch repair protein MutS	E5RUN9	Heterocapsa_circularisquama_DNA_virus	3.2e-08	24.1
WP_110047141.1\|70536_70890_+	hypothetical protein	NA	NA	NA	NA
WP_110047142.1\|70957_72439_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_110047143.1\|72609_73587_-	RluA family pseudouridine synthase	A0A2H4UV25	Bodo_saltans_virus	3.0e-07	30.8
WP_110047144.1\|73596_74907_-	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA
WP_110047145.1\|74972_75965_-	porphobilinogen synthase	NA	NA	NA	NA
WP_110047146.1\|76255_77821_-	uroporphyrinogen-III C-methyltransferase	NA	NA	NA	NA
WP_110047147.1\|77827_78820_-	hydroxymethylbilane synthase	NA	NA	NA	NA
WP_110047148.1\|78881_79577_-	bifunctional precorrin-2 dehydrogenase/sirohydrochlorin ferrochelatase	NA	NA	NA	NA
WP_110047149.1\|79633_80446_-	cytochrome c biogenesis protein CcsA	NA	NA	NA	NA
WP_110047150.1\|80507_81896_-\|tRNA	glutamyl-tRNA reductase	NA	NA	NA	NA
WP_110047151.1\|82436_83084_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA
WP_110047153.1\|85510_87214_-\|protease	ATP-dependent protease LonB	A0A0R6PGP8	Moraxella_phage	8.6e-18	34.2

DBSCAN-SWA_2

132251 : 185206

Bacillus_phage(12.5%)

transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_110047716.1\|132251_133399_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	4.7e-36	36.6
WP_110047694.1\|133713_134106_-	FxsA family protein	NA	NA	NA	NA
WP_110047693.1\|134228_134714_-	acyl-CoA thioesterase	NA	NA	NA	NA
WP_110047692.1\|134801_136556_-	pyruvate kinase	A0A2H4PQU5	Staphylococcus_phage	8.0e-11	42.2
WP_110047691.1\|136589_137648_-	acetyl-CoA carboxylase carboxyltransferase subunit alpha	NA	NA	NA	NA
WP_110047690.1\|137637_138522_-	acetyl-CoA carboxylase carboxyltransferase subunit beta	NA	NA	NA	NA
WP_110047689.1\|138558_138747_-	glutamate decarboxylase	NA	NA	NA	NA
WP_110047688.1\|138890_139385_-	phosphatidylglycerophosphatase A	G3MBC5	Bacillus_virus	2.2e-35	50.7
WP_110047719.1\|140015_140888_-\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	4.8e-25	29.4
WP_174812768.1\|140899_141190_-\|transposase	transposase	NA	NA	NA	NA
WP_110047375.1\|141681_145509_-	DNA polymerase III subunit alpha	A0A0K1Y906	Streptomyces_phage	1.9e-214	39.4
WP_110047402.1\|145830_146157_+	YtrH family sporulation protein	NA	NA	NA	NA
WP_110047376.1\|146158_146656_+	hypothetical protein	NA	NA	NA	NA
WP_110047377.1\|146994_148233_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_110047378.1\|148408_149266_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_110047379.1\|149399_149699_+	DUF308 domain-containing protein	NA	NA	NA	NA
WP_110047403.1\|150042_150798_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
WP_110047380.1\|150880_152245_-	CBS domain-containing protein	NA	NA	NA	NA
WP_110047381.1\|152339_152633_-	hypothetical protein	NA	NA	NA	NA
WP_110047382.1\|152769_153105_-	YlbF family regulator	NA	NA	NA	NA
WP_110047383.1\|153534_154899_+	YheC/YheD family protein	NA	NA	NA	NA
WP_110047384.1\|154913_156128_+	YheC/YheD family protein	NA	NA	NA	NA
WP_110047385.1\|156124_157501_+	YheC/YheD family protein	NA	NA	NA	NA
WP_110047386.1\|157490_158645_+	YheC/YheD family protein	NA	NA	NA	NA
WP_110047387.1\|158645_159164_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_110047388.1\|159145_160300_+	YheC/YheD family protein	NA	NA	NA	NA
WP_110047404.1\|160641_161877_-	D-alanyl-D-alanine carboxypeptidase	A0A1P8VVG5	Erythrobacter_phage	3.5e-05	26.6
WP_174812769.1\|162045_162396_-	hypothetical protein	NA	NA	NA	NA
WP_110047390.1\|162717_163692_-	aldo/keto reductase family protein	NA	NA	NA	NA
WP_110047405.1\|163896_164319_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
WP_110047391.1\|164418_165666_-	2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA	NA	NA	NA
WP_110047392.1\|165671_168539_-	2-oxoglutarate dehydrogenase E1 component	NA	NA	NA	NA
WP_110047393.1\|168858_169887_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
WP_110047394.1\|169886_170669_-	sugar phosphate isomerase/epimerase	NA	NA	NA	NA
WP_174812770.1\|170850_171750_-	hypothetical protein	NA	NA	NA	NA
WP_110047396.1\|171839_173150_-	hypothetical protein	NA	NA	NA	NA
WP_110047397.1\|173267_174086_-	DUF2935 domain-containing protein	A0A2I2L551	Orpheovirus	4.8e-43	39.1
WP_174812771.1\|174887_175979_+	DUF3800 domain-containing protein	NA	NA	NA	NA
WP_174812772.1\|176098_176485_-	recombinase family protein	NA	NA	NA	NA
WP_110047400.1\|176570_177461_-	hypothetical protein	NA	NA	NA	NA
WP_110047401.1\|178537_179890_-\|transposase	transposase	NA	NA	NA	NA
WP_174812773.1\|181750_182902_+\|transposase	IS4 family transposase	NA	NA	NA	NA
WP_110044746.1\|183253_183433_+	hypothetical protein	NA	NA	NA	NA
WP_110044745.1\|183922_184366_+	hypothetical protein	NA	NA	NA	NA
WP_110044744.1\|184750_185206_-\|holin	phage holin family protein	A0A0N7GFE6	Paenibacillus_phage	2.3e-18	43.8

DBSCAN-SWA_3

1409806 : 1441010

Bacillus_phage(25.0%)

tRNA,tail,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_110046310.1\|1409806_1411138_+\|tRNA	serine--tRNA ligase	A0A1V0SK42	Klosneuvirus	3.7e-40	26.2
WP_110046309.1\|1411497_1413090_+	GGDEF domain-containing protein	NA	NA	NA	NA
WP_110046308.1\|1413341_1414205_-	bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase	A0A249XZQ2	Enterococcus_phage	2.4e-24	34.8
WP_110046307.1\|1414506_1415580_-	ABC transporter substrate-binding protein	NA	NA	NA	NA
WP_110046306.1\|1415576_1416395_-	ABC transporter permease	NA	NA	NA	NA
WP_110046305.1\|1416394_1417204_-	ABC transporter permease	NA	NA	NA	NA
WP_110046304.1\|1417193_1418324_-	ABC transporter ATP-binding protein	Q6GZ03	Mycoplasma_phage	6.0e-36	41.5
WP_110046303.1\|1418858_1419734_-	AraC family transcriptional regulator	D0R0F8	Streptococcus_phage	3.0e-27	29.5
WP_110046302.1\|1419840_1420722_-	C39 family peptidase	NA	NA	NA	NA
WP_110046301.1\|1420741_1421821_-	hypothetical protein	A0A141HSF4	Bacillus_phage	5.1e-16	31.7
WP_110046300.1\|1421852_1424354_-	hypothetical protein	NA	NA	NA	NA
WP_174812854.1\|1424458_1426501_-	hypothetical protein	NA	NA	NA	NA
WP_110046298.1\|1426490_1428452_-\|plate	putative baseplate assembly protein	NA	NA	NA	NA
WP_110046297.1\|1428521_1431671_-\|plate	putative baseplate assembly protein	NA	NA	NA	NA
WP_110046296.1\|1431689_1432085_-	GPW/gp25 family protein	Q76YN2	Aeromonas_virus	5.4e-08	35.4
WP_110046295.1\|1432103_1432397_-	PAAR domain-containing protein	NA	NA	NA	NA
WP_110046294.1\|1432450_1433119_-\|tail	phage tail protein	NA	NA	NA	NA
WP_110046293.1\|1433115_1434201_-	phage late control D family protein	NA	NA	NA	NA
WP_110046292.1\|1434202_1434838_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
WP_174812855.1\|1434877_1436476_-	hypothetical protein	NA	NA	NA	NA
WP_174812856.1\|1436361_1437420_-	hypothetical protein	NA	NA	NA	NA
WP_110046290.1\|1437416_1437857_-\|tail	phage tail protein	T2KTT5	uncultured_phage	1.3e-10	35.6
WP_110046289.1\|1437878_1438103_-	hypothetical protein	NA	NA	NA	NA
WP_110046288.1\|1438054_1438423_-	hypothetical protein	NA	NA	NA	NA
WP_110046287.1\|1438515_1438953_-\|tail	phage tail protein	NA	NA	NA	NA
WP_110046286.1\|1439180_1441010_-\|tail	phage tail sheath family protein	J9PVC2	Bacillus_phage	7.7e-57	28.5

DBSCAN-SWA_4

2439091 : 2472245

Paenibacillus_phage(32.14%)

integrase,terminase,capsid

attL 2439008:2439023|attR 2478629:2478644

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2439008:2439023	attL	NA	NA	NA	NA
WP_110045995.1\|2439091_2440324_-\|integrase	site-specific integrase	A0A0C5AN64	Paenibacillus_phage	2.1e-58	36.6
WP_110045994.1\|2440377_2440866_-	ImmA/IrrE family metallo-endopeptidase	A0A0K2CZC9	Paenibacillus_phage	1.5e-31	52.8
WP_110045993.1\|2440874_2441204_-	helix-turn-helix transcriptional regulator	A0A2H4J245	uncultured_Caudovirales_phage	2.7e-13	61.3
WP_110045992.1\|2441358_2441595_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_174812909.1\|2441584_2441797_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_110045990.1\|2441935_2442124_+	hypothetical protein	NA	NA	NA	NA
WP_174812910.1\|2442115_2442274_-	hypothetical protein	NA	NA	NA	NA
WP_110045989.1\|2442591_2442906_+	hypothetical protein	NA	NA	NA	NA
WP_110045988.1\|2442948_2444274_+	AAA family ATPase	Q5YA97	Bacillus_phage	7.6e-163	69.2
WP_110045987.1\|2444273_2445353_+	ATP-binding protein	A0A0K2CZH1	Paenibacillus_phage	2.4e-143	69.6
WP_110045986.1\|2445374_2445983_+	hypothetical protein	A0A2I7SC41	Paenibacillus_phage	1.1e-55	70.8
WP_110045985.1\|2445992_2447573_+	DEAD/DEAH box helicase	A0A2I7SC38	Paenibacillus_phage	4.2e-277	88.6
WP_110045984.1\|2447594_2447966_+	hypothetical protein	NA	NA	NA	NA
WP_110045983.1\|2448106_2448481_+	hypothetical protein	A0A2H4J073	uncultured_Caudovirales_phage	3.9e-16	44.6
WP_174812911.1\|2448494_2450051_+	PcfJ domain-containing protein	A0A2H4J8D4	uncultured_Caudovirales_phage	4.0e-62	33.7
WP_110045981.1\|2450047_2450902_+	DUF3102 domain-containing protein	A0A2H4J025	uncultured_Caudovirales_phage	3.0e-19	37.3
WP_110045980.1\|2450919_2451453_+	hypothetical protein	NA	NA	NA	NA
WP_110045979.1\|2451480_2451837_+	hypothetical protein	NA	NA	NA	NA
WP_110045978.1\|2451863_2452397_+	hypothetical protein	NA	NA	NA	NA
WP_110045977.1\|2452386_2454648_+	AAA family ATPase	A0A0K2CZ75	Paenibacillus_phage	0.0e+00	80.2
WP_110045975.1\|2455103_2455502_+	RusA family crossover junction endodeoxyribonuclease	Q5YA86	Bacillus_phage	7.3e-53	71.3
WP_110045974.1\|2455505_2455721_+	hypothetical protein	A0A0K2CZG3	Paenibacillus_phage	1.1e-20	60.3
WP_110045973.1\|2455717_2456008_+	hypothetical protein	NA	NA	NA	NA
WP_110045972.1\|2456000_2456603_+	RNA polymerase subunit sigma-24	NA	NA	NA	NA
WP_110045970.1\|2456983_2457241_+	hypothetical protein	NA	NA	NA	NA
WP_110045969.1\|2457299_2458019_+	hypothetical protein	A0A2P1JTW4	Anoxybacillus_phage	3.2e-43	54.6
WP_110045968.1\|2458011_2459331_+\|terminase	PBSX family phage terminase large subunit	A0A1J1J8Z1	Escherichia_phage	4.7e-72	36.1
WP_110045967.1\|2459334_2460822_+\|capsid	capsid protein	M9Q246	Clostridium_phage	1.5e-180	63.1
WP_110045966.1\|2460818_2462681_+	hypothetical protein	M9Q2F2	Clostridium_phage	3.1e-98	48.6
WP_110045965.1\|2462693_2462903_+	hypothetical protein	NA	NA	NA	NA
WP_110045964.1\|2463078_2463666_+	phage scaffolding protein	S5M9M5	Brevibacillus_phage	1.2e-19	39.1
WP_110045963.1\|2463678_2464554_+\|capsid	capsid protein	M9Q2F4	Clostridium_phage	7.1e-77	50.5
WP_110045962.1\|2464567_2464828_+	hypothetical protein	NA	NA	NA	NA
WP_110045961.1\|2464832_2465195_+	hypothetical protein	M9Q2K9	Clostridium_phage	6.7e-21	51.5
WP_110045960.1\|2465194_2465515_+	hypothetical protein	M9Q2I3	Clostridium_phage	7.9e-34	60.0
WP_110045959.1\|2465514_2465913_+	hypothetical protein	M9Q249	Clostridium_phage	5.2e-27	48.4
WP_110045958.1\|2465909_2466296_+	hypothetical protein	M9Q2F6	Clostridium_phage	1.5e-42	60.9
WP_110045957.1\|2466304_2466745_+	hypothetical protein	M9Q1I1	Clostridium_phage	8.4e-34	47.6
WP_110045956.1\|2466761_2467070_+	hypothetical protein	NA	NA	NA	NA
WP_110045955.1\|2467041_2467419_+	hypothetical protein	M9Q2I4	Clostridium_phage	1.0e-24	48.6
WP_110045954.1\|2467419_2469969_+	hypothetical protein	A0A2H4J4V9	uncultured_Caudovirales_phage	8.5e-46	40.7
WP_110045953.1\|2469970_2470330_+	hypothetical protein	R9TNE7	Paenibacillus_phage	4.7e-27	48.7
WP_110045952.1\|2470334_2472245_+	hypothetical protein	R9TMD0	Paenibacillus_phage	2.8e-142	55.9
2478629:2478644	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. NZ_CP054612

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP054612_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP054612_1

1299234-1299368

Orphan

Consensus_repeat	Method
CCGCTTTCGATCACGAAGCAACACAAGAAGTGTATTCGGC	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP054612_1

>merge|NZ_CP054612|1|1299234-1299368|CRISPRCasFinder
CCGCTTTCGATCACGAAGCAACACAAGAAGTGTATTCGGCTGGTGCTGAAAACCGAACTTTTTGAACATGCAATTTATGAGGTCGTTCAAAAAGTCCGCTTTCGATCACGAAGCAACACAAGAAGTGTATTCGGC

>NZ_CP054612|1|1|1299234-1299368|CRISPRCasFinder
CCGCTTTCGATCACGAAGCAACACAAGAAGTGTATTCGGC	TGGTGCTGAAAACCGAACTTTTTGAACATGCAATTTATGAGGTCGTTCAAAAAGT
CCGCTTTCGATCACGAAGCAACACAAGAAGTGTATTCGGC

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054612.1\|WP_110042683.1\|1291279_1292182_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP054612.1\|WP_110042673.1\|1309502_1309811_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054612.1\|WP_110042687.1\|1285727_1286600_+\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP054612.1\|WP_110042671.1\|1311585_1312323_+\|5-oxoprolinase-subunit-PxpB	unknown	unknown	gnl\|CDD\|224960
NZ_CP054612.1\|WP_110042686.1\|1286617_1288078_+\|gluconolactonase	unknown	unknown	gnl\|CDD\|271320
NZ_CP054612.1\|WP_174812554.1\|1296778_1299217_+\|glycoside-hydrolase-family-2-protein	unknown	unknown	gnl\|CDD\|225789
NZ_CP054612.1\|WP_110042810.1\|1305226_1307323_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP054612.1\|WP_110042675.1\|1307375_1308824_-\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054612.1\|WP_110042678.1\|1299607_1300573_+\|nucleoid-structuring-protein-H-NS	unknown	unknown	gnl\|CDD\|163682
NZ_CP054612.1\|WP_110042676.1\|1303425_1305171_+\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|182732
NZ_CP054612.1\|WP_174812555.1\|1309927_1311253_+\|VWA-domain-containing-protein	unknown	unknown	gnl\|CDD\|214621
NZ_CP054612.1\|WP_110042670.1\|1312461_1313523_+\|biotin-dependent-carboxyltransferase-family-protein	unknown	unknown	gnl\|CDD\|224895
NZ_CP054612.1\|WP_110042684.1\|1288709_1291283_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054612.1\|WP_110042677.1\|1300977_1302828_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224055
NZ_CP054612.1\|WP_110042681.1\|1293279_1295541_+\|DUF5060-domain-containing-protein	unknown	unknown	gnl\|CDD\|379863
NZ_CP054612.1\|WP_110042682.1\|1292211_1293240_+\|carbohydrate-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223472
NZ_CP054612.1\|WP_110042688.1\|1284748_1285723_+\|sugar-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224096
NZ_CP054612.1\|WP_110042680.1\|1295594_1296692_+\|SGNH/GDSL-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|238141
NZ_CP054612.1\|WP_110042674.1\|1309070_1309433_+\|helix-turn-helix-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224647
NZ_CP054612.1\|WP_110042685.1\|1288067_1288688_+\|YIP1-family-protein	unknown	unknown	gnl\|CDD\|377418

Protein	Function_ID	Function_description	E-value
NZ_CP054612.1\|WP_110042683.1\|1291279_1292182_+\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	1.98574e-34
NZ_CP054612.1\|WP_110042687.1\|1285727_1286600_+\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	4.73148e-57
NZ_CP054612.1\|WP_110042671.1\|1311585_1312323_+\|5-oxoprolinase-subunit-PxpB	gnl\|CDD\|224960	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism].	3.08038e-84
NZ_CP054612.1\|WP_110042686.1\|1286617_1288078_+\|gluconolactonase	gnl\|CDD\|271320	cd05819, NHL, NHL repeat unit of beta-propeller proteins. The NHL(NCL-1, HT2A and LIN-41)-repeat is found in multiple tandem copies, typically as 6 instances. It is about 40 residues long and resembles the WD repeat and other beta-propeller structures. The repeats have a catalytic activity in Peptidyl-glycine alpha-amidating monooxygenase; proteolysis has shown that the Peptidyl-alpha-hydroxyglycine alpha-amidating lyase (PAL) activity is localized to the repeats. Tripartite motif-containing protein 32 interacts with the activation domain of Tat. This interaction is mediated by the NHL repeats.	2.73467e-26
NZ_CP054612.1\|WP_174812554.1\|1296778_1299217_+\|glycoside-hydrolase-family-2-protein	gnl\|CDD\|225789	COG3250, LacZ, Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism].	2.08578e-88
NZ_CP054612.1\|WP_110042810.1\|1305226_1307323_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.49151e-166
NZ_CP054612.1\|WP_174812555.1\|1309927_1311253_+\|VWA-domain-containing-protein	gnl\|CDD\|214621	smart00327, VWA, von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.	5.70811e-07
NZ_CP054612.1\|WP_110042678.1\|1299607_1300573_+\|nucleoid-structuring-protein-H-NS	gnl\|CDD\|163682	cd07944, DRE_TIM_HOA_like, 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".	2.15988e-118
NZ_CP054612.1\|WP_110042670.1\|1312461_1313523_+\|biotin-dependent-carboxyltransferase-family-protein	gnl\|CDD\|224895	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism].	1.14715e-112
NZ_CP054612.1\|WP_110042676.1\|1303425_1305171_+\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|182732	PRK10789, PRK10789, SmdA family multidrug ABC transporter permease/ATP-binding protein.	1.99257e-179
NZ_CP054612.1\|WP_110042677.1\|1300977_1302828_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224055	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms].	1.03228e-98
NZ_CP054612.1\|WP_110042681.1\|1293279_1295541_+\|DUF5060-domain-containing-protein	gnl\|CDD\|379863	pfam16586, DUF5060, Domain of unknown function (DUF5060). This is the N-terminal domain of a putative glycoside hydrolase, DUF4038. It is found in a number of different bacterial orders.	2.26858e-18
NZ_CP054612.1\|WP_110042682.1\|1292211_1293240_+\|carbohydrate-ABC-transporter-permease	gnl\|CDD\|223472	COG0395, UgpE, ABC-type sugar transport system, permease component [Carbohydrate transport and metabolism].	1.29099e-53
NZ_CP054612.1\|WP_110042688.1\|1284748_1285723_+\|sugar-ABC-transporter-permease	gnl\|CDD\|224096	COG1175, UgpA, ABC-type sugar transport systems, permease components [Carbohydrate transport and metabolism].	6.30902e-53
NZ_CP054612.1\|WP_110042680.1\|1295594_1296692_+\|SGNH/GDSL-hydrolase-family-protein	gnl\|CDD\|238141	cd00229, SGNH_hydrolase, SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.	2.4266e-08
NZ_CP054612.1\|WP_110042674.1\|1309070_1309433_+\|helix-turn-helix-transcriptional-regulator	gnl\|CDD\|224647	COG1733, COG1733, Predicted transcriptional regulators [Transcription].	9.4262e-35
NZ_CP054612.1\|WP_110042685.1\|1288067_1288688_+\|YIP1-family-protein	gnl\|CDD\|377418	pfam04893, Yip1, Yip1 domain. The Yip1 integral membrane domain contains four transmembrane alpha helices. The domain is characterized by the motifs DLYGP and GY. The Yip1 protein is a golgi protein involved in vesicular transport that interacts with GTPases.	0.00551579

>NZ_CP054612.1|WP_174812554.1|1296778_1299217_+|glycoside-hydrolase-family-2-protein
MDKIALNGEWQLNNERTGEQYAAQVPGFVQKDLMNAGLLPNEQQTLFEPVVEWVEHDDWTYSRSFELSEDQLRADGLALVLEGVDTYAEILLNGQTIGQTDNMFIAHRFDISGAARLHNEMVIRIASPTRFLQEKEREFGDPLLLWNGIPARLFGRKAQYGYGWDWGPRLVTVGIHKPVYIEVLERCSADKLTYNLTHISDERAILNVTVAASAIGADSRIANILCQLYDGDALVAETCENAVEISKDGTETTLSLIMNKPKRWYPIGYGDQAMYTLMAAVTADCKTAALSREIGLREVELKQPYDKQGRKFIIEVNGIPMLCKGVNWIPLTLYPGLDTRADYAAEIDGIVEANMNMIRIWGGGYYENPDFYAECDRRGVMVWQDFMFACGDYPDDDAFCELVRKEARYVIDTYNQHPSIVLWCGNNENQHFVENSRKKRKNGYGEKLYFEVLDEECARDKMRPYWPTSPFSYSVDEGHNDNDYGDQHYWQVWGHVAPYENYQTINGRFLSEFGMQSYPSVRVLDQVDREADLRHAKFQAIQKAPNGTQRLLYYTVGDYRLPANKRDFVYVNQLMQANALRLGVEHWIARMPDTSGALIWQWSDLWPSISWSIVDYDKVKKPSYYYMKRTFQTPNALLRVVQGEEQAGLFLVHEKGDFRGEIEVSFYDIVDQQTVRTDKLEANGSGYRSTRIGTVQLGDHDPARIVVFVRLLQDGQVLADNSYLIGKPYQLELKPANLRMEQREENGAIIVTISSDVFAKDVCLPNLAAKLSDNYFDLRAGEARTIRIEGLQADEVLVPTCLNDAVRTAEYI
>NZ_CP054612.1|WP_110042680.1|1295594_1296692_+|SGNH/GDSL-hydrolase-family-protein
MELQVWNHRGNLANTKRAIAEGELTLGFIGGSITDARPRHNWPEPVIAWFVDTYPGVRIVVENAAIGATGSDLAVFRAKRDLIDRGCHIVFVDYAVNDNDVPTERRTRTREGLLRQLLADGERDVVLAHTFSQDMYEPMMAGEQPSSVAELEALAEHYSIGSVWMGLYAMRQVQRGLMRWEEWLPDNLHPTNRGSLAYGESVIRYLKQELAADKVLTESRAARTLIEPINSLHWGNAVTMPLTAALTEGPWTIRRWPYYEWVDRVLDTTAPGARLTIPFEGRGIALAIDFGKATAEIRYRLDGGEWRVYELERPDWNGNDGWLRLLTISDELTVGEHQLELETFLGSGTNNKGTNLRLAIIGIIP
>NZ_CP054612.1|WP_110042681.1|1293279_1295541_+|DUF5060-domain-containing-protein
MKRNVKLAAIPVTIITVVVVIAAVTGIMLLRDRDKGKEESATLQQTNEEKVGIVDVVPNTEQVGRYDKFELLVHLSETYSNPYDPAEVDLSATFQSPTGAEWPINGFYDGSDWRIRFSPSETGDWSYNISLKDSAGSSTLDGGKFAVTASDHHGWIEVSKTNKRFLQYNDGTSFFGVGVAYPWGINETMLDVLVNNGVNYITYWNGNYDNSGSGGGNEQLESVTSGIGRYDVAKGKRVDELLDSFEKRDLIMNFVVWPHDSLADKINWPATWTKNAYSALGEAKDFYASDAAWAYQEKLYRYMIARWGYSRSLGVWDLVVEVNGTDGWQLGDQAKANEWLTKIHDYFAKNDPYHRPTSASMAGNKEDYWDHAYQTVDVSDRENYYDIGHDAFAEDIQKRWASYEKPLIIGETGNVADVNAYHNAIWVALANGLASSPVWWDIEKVDEPMFGQMKVLSQFVHPIDFNEQRKPVKANAPSVEVPLPSSIPLIGEGEDKSSWSVPDWAPANKDAQGVVYAAEVTGTGDDRVVSVPMRFATGEFSQGYYDNSGGLSDWRGYDAFVFEVKAEGAGADGLLAKAVLHPTGQWTEADDAQSVKLKAGEWTTITVPLKDVPEHYWRDATIPEDALDTIVRWGVKVYAQQTPKEAEPVTISVRHPKLTTKQPKTIMKAESSAWLMKGEQLSYGWQIAAEGSVGGHTVSIPEWGSKAANVQWIDAWTGDVLKEEQVQPDATGSLPLTAPATERSDVAFRIFDQ
>NZ_CP054612.1|WP_110042682.1|1292211_1293240_+|carbohydrate-ABC-transporter-permease
MQLAKRITQLKDGLSSDTLLHSSQAHRVRTRAGELVWSIFRYVLIIGISFIIVYPLLLKLSVAFKSRDDIFDPTIFIVPKHFTFSNVEIAVKVLKFFPTLGQTLLFVVAMMILSTASCALAGYGFARFSFPGRNLLFGLVVLTILVPAETLMVPTYLHFRSFDFLNLVTLFTGKDGINLMNSYWPSTILSVTANGLKAGLYIYIFRQFFRGMPAEIEEAALIDGAGGIATFFRIMLPNAVPPLITVMLFAFVWQYNDTFYNSMFMSDMHLMPSQIASLPGNAGVYISTVIYGGADPNAKPDPNYVAMIVDTGLLVAISPLIVMYLFVQRYFVESVERTGVVG
>NZ_CP054612.1|WP_110042683.1|1291279_1292182_+|sugar-ABC-transporter-permease
MKMPPMTLKRRRSILGFAFVSPWLIGFIFLFAVPLIQSIKFSFTKLELVPGGFTLKSVGWGNFNNALFVDANFNRQLTESVINMLVNVPLILFFSLFCATLLNQKFRGRALARAMFFLPVILASGAVAAAEAQGLISLIGDSTTAEQMEGASAMFNTLPLVDTLLEGGAPMWAVDYLINAVDRIYEIITASGVQILIFLAALQSIPGSMYEVAKIEGATSYETFWKITFPMVSPLILTNVIYTIIDSFTDSTVTRTIVKTAFTSQNFGLSAAMSWLYTLVAALLLFVIGYLISKKVFYYN
>NZ_CP054612.1|WP_110042684.1|1288709_1291283_+|hypothetical-protein
MRKKTIYSLLVVLVLIGLCWGGYKLLNRGAPVTAAIATVDAAATEAGSEYKPLKDSTGGVPGMSLAAQDDELGLYFNPDNAQIAIKQLKSGQVWYSNPTGANDDSIAQPFEKGTMNSQFMLTFRDKVMNEVTFGSYVDSVEKKQFTVESIKNGVRVVYTLGDSSKGVAALPKLISKTRLQEKVLDKLDEATAKYVSLRYYSSKSNPDVMELIEEQVKKDLVLKKMVDAFAKAGYTEEDLAADNAENGADGGNAGSAKAKFVIPLEYRLNDGKLSVRIPVGSIEETKGFTLRTIELMNFFGAAGTSEQGYILVPDGSGSLIYFNNGKINDDHYSQVVYGQDHTDNSTRRSQVSESARMPVFGMKSGDTAWYGVIDKGEALASINADISGKTNSYNHAYASFQVRAEDSLFMYSGGKESEIPILTKSLYAGDIEVSYGFLNGAKANYAGIAAEYRSTLADGAGLQPLAASENKLPFYVDVIGATTKTKSVLGVPYEALNAVTTFKQAGMMADEMNEQGIDNIRMRMLGWSAGGVYHEPSAAKPLGKLGGTSGFKKLADKLKNSGGALYPDTAFLHVYEDTLGFAPSSDAARFTTREVALQAPINRALNRMDSDLGLFYLLSPSKLPAFIDRFSSRYSKLGLSSLSLRDLGEELNGDYRASRVVNRQTAKSIAADGFNSLHSEYADLMVDGGNSYSLPYASHIIDAPMSSSGFNITDESVPFYELVMHGYADYTGEPINQSTEQDPSKQLLKLLEYGASPRFVWTYESSTEFKFTKFDYWYATQYTDWLDQAADLYKKADQVLAPLRSVPMTNHEKLQEGVYRSTFGNGTTITVNYNDTAVTVDGVSIDSNQYVIGGEGA
>NZ_CP054612.1|WP_110042685.1|1288067_1288688_+|YIP1-family-protein
MKYEWLRFPLHVIVRPFDGFWDMKYEKKGKGLVALLILLLLIIAVIIQKQFSGFLVNFNDPRYLNSIDEFKYILLPFILWCLSNWSVTTLLDGEGRLKEIMITTAYALTPLVLIYYPTTLMSNFITNEESSFFYLLNSFAGLWFIWLLFVGMMTVHQYTVTKTIVTMLLTIVVMAIIVFLGMLVFSLIQQIIEFIYNIYYELIFRN
>NZ_CP054612.1|WP_110042686.1|1286617_1288078_+|gluconolactonase
MRSRRMLIVLAAIVMLVSGAAPTAAASAPYESYNYNYWEDAVPSPEAYLPSRSITGEGLGIGNFLEPSDMYAANGSVYVLDRGNNRIVVMDSNWKLKTVIKSFDNNGKQDGFNKPEGMFVADDGTLYIADTENKRVVMLHSDGQLAGIIANPKSDILASNFDFVPLKLTVDRAKRVYVVTRGVFEGIVQFDSDGSFIGFVGTNKVQPNAADYAWRLYATKAQRAKMVLFIPTEFSNVDIDKKGFVYATNIDPGSDTPVKRISPSGDDVLKRYGYFPVKGDIRYRQMGNDGGPSQLVDVKVRDNGMYSVLDSLRSRIFTYDEEGNLLYVFGGKGNQLGTFKLPVAIEAMGDRMAVLDQGRGRIVEFKPTAFGSSVNQAVALHNDGQDQAAVEVWQQVLKLNSNYDIAYIGIGKSYLMEKRNKEAMTYFKLGLDRKDYSVAYKRYRREVIKEHFGQAMTVIMVIALASLAAWMMVRFRRRRRLISHEV
>NZ_CP054612.1|WP_110042687.1|1285727_1286600_+|carbohydrate-ABC-transporter-permease
MNMTLRLLPRKKRVNRSFAGTVSLFVLLAGFGAFMVLPLIYAINNAFKPLDEIFLFPPRLFVRNPTMSNFTDLMNLLGNSWVPFTRYIFNTVFITGMGIVGHVLLASAAAYPLAKHRFPGKGILFTIVVLSLMFTPAVTAIPNYMIMSWLGMINSYWAVIVPAFAFPLGLYLMKQFIEQIPDALLEAAKIDGATEYRIWWSIIMPNVKPAWLTLVILLFQLLWGSDGNGFIYSEQLKSLHYASSQIIQGGIARAGVGAAVALLLMSVPITLFIFSQSRIIETMATSGMKD
>NZ_CP054612.1|WP_110042688.1|1284748_1285723_+|sugar-ABC-transporter-permease
MTSLSKAETGLQTERSSSETQRVKRAKLAELRRQMKVSKHSYILLAPYMLLFGLFTVLPVVMSVLISFTYFNMLEFPRFIGWQNYSRLFLDDDVFLIAIKNTLLFAAITGPVSYIACFVFAWIINEMSPKVRALMTLVFYAPSISGNIFFIWQIIFSGDRYGIMNGLLMKFGFIYEPIQWLKKEEYILPILILVQLWLSLGTGFLAFIAGLQTVDKTLYEAAAVDGVRNRWQELWYVTLPSMRPQLMFGAVIQLTTSFAVADVSIYLAGFPSVNYAGETIVTHLIDYGTIRFEMGYASAIATVLFMLMVGTNLIVQKLLRKVGE
>NZ_CP054612.1|WP_110042678.1|1299607_1300573_+|nucleoid-structuring-protein-H-NS
MSAKNNNCKIVDCTIRDGGLVNNWDFSVEFVQHLYNSLNEAGVDYMEIGYKNSPKLLKGADSAGPWRFLDDDFLRKVIPNKGNTKLSALVDIGRVDENDILPRSESMLDLIRVACYIQDVDKALDLVKIFHERGYETTLNIMALSNVMENQLIEAFQLIRESVVDVVYIVDSYGSLKPNDYVYLVNKFKEHLPNKRLGAHTHNNMQLAFANTIIAAESGVELLDASVYGMGRAAGNCNTELLVAHLPNAKYNVRPVLDMIEKYMLPLREKEEWGYIMEYMVTGMLDEHPRSGMAQRDNVEMRDRVVEFYDRLTTPEIAHSK
>NZ_CP054612.1|WP_110042677.1|1300977_1302828_-|ABC-transporter-ATP-binding-protein
MSIPMPDQSLSRREQWKRTTQLLSTLLRIYTLSWKQARWGLIGTALCRLLLAIIPLIHMYLVSRLVNAVTEVITAGAGLKNVLVILAIQTGLSIGSAAIRSLEQMIMAALKLRIQAHIEEQMAAKSTRLPLVYFDRPDYYDSFHRAMGSQHSLILFDNSFIVIQSALTVIGYFAVVISFHWLLAVGLLLFVIPSLLVNMRLGEQRFIQMLNQTAIARRVNYLYNLLIGREAAKEIRLFGLSSHLIDQWRSSFMLNAKQKLKLERKGITMNWGVDSFNSILSGALIVGLAWLGTKGRLSIGQYVALTEAFNAVNGQLMSISSNLTFMYQNVLYAQGLFTFLDTPEEGAKHPSDALPLSKPLHKGIDIRNLSFQYPNQPFPTLHQVNLHIPPGYKIAIVGDNGAGKSTLAKCILGLYSASEGAVEYDGVNILDLEPADLRKRVTAVFQDFVRYQSTVRDNIGFGALDRLQDNSWLEVAASKSGANEIIESLPEQFDTMLGPMFEGGRELSQGQWQKIAISRAYFRDAELVVLDEPTASMDPMTEAAVFENFLQIAEGKTTLLISHRLGICKAVDHIIVMKHGRIVEQGTHEELLRLGGEYEQMYQVQSKWYDSEIVTV
>NZ_CP054612.1|WP_110042676.1|1303425_1305171_+|ATP-binding-cassette-domain-containing-protein
MFSVLRKLSWFFKQYWRRYTVAVVLLIIVGIFEVIPPKVLGYAIDGITQGRLGDTTFYWIIGGWIGLTAICYVITYIWMYQLFGGAIVLERLLRSRLMRHFLRMTPTFYERNRTGDLMARATNDLGAISTTAGFGILTLIDSTVFMLTILFMMVVLISWKLTLAALLPLPLLALALKYFGGRIHDRFMKAQDAFGELNDQVLESVAGVRVVRAYVQEEADRARFQAKTEEVLARNIEVSRIDALFEPTNKILIGLSYLIGLCYGAYLVFHSEITLGELVSFNFFLGMLIWPMFAIGELINVMQRGNASLDRVAETLNYKPDVTDGTDLETMDNPESIAFREVTFRYPSSTVNNLEDVSFMLQQGQTLGVVGRTGSGKTTLLRQLLREYPLGEGAIEIAGTPMERIAVDQMLGWVGYVPQQPILFSRTIRENILFGAEEATEADLQRALDRASFAKDITFLPSGLETLVGEKGVALSGGQKQRVSIARALIANPSILMLDDALSAVDARTEAEIIEGIRTERAGKTTIITTHRLSAVQHADWIIVLDNGRITEAGKHEELLELNGWYKEQYDRQQLEALAEA
>NZ_CP054612.1|WP_110042810.1|1305226_1307323_+|ABC-transporter-ATP-binding-protein
MQRRPGTGKRLFQYAMLFRSKIIIALVLLALAVCAELVGPFIAQRMIDQNILSIEKPWHEVAAGTTDSAEYAGKSYKREDRLNTDESSGAIIHIIQVQRDYYFVEGDMPFDGARDITADGKLAIVSKEGESASYLAVKLTKSELYHFYKPELPRLLKTAGMYLGLLVIAAFFTYGQRLLLLTTANRIVQRMREDVFAHIQRLPVYYFDNLPAGKVVSRITNDTEAVRELFVAVLANFFSGIVYMVAIIGALFLLDPHLALIAVPIIPILVVWIILYRRRAGRINEAIRSKLSDINGMINESIQGMPIIQAFRRQKKTIEEFDEHNKDLFSNANKLLSLNSLTSHNLTGVLRNIVFITVLWTFWGGSLSTFVTVGVLYAFIDYINRMFTPIVGIVNQLSNLETARVSAGRVFQLLDEPGTDVTAGSLPRSKGDVKFDNVSFAYKEDEYVLRNISLEARQGETVALVGHTGSGKSSILNLLFRFYDIEQGNGQILVDGEDVRDVPKQLLRQHMGIVLQDPFLFTGTIASNVSLDNPTISRERVIQALKDVGAYDMFMQLPGGIDEPVVEKGATLSAGQRQLISFARALAYDPAILILDEATASIDTETESIIQAALDVLKKGRTTFVIAHRLSTIRQADQILVLDRGRIVERGDHDALMAHGGKYYDMYQLQAGAGGSANANASVSEPHNEQAAAAHSHS
>NZ_CP054612.1|WP_110042675.1|1307375_1308824_-|hypothetical-protein
MTPYRAAIGEQHIVWGNQINVDQLAADNPPADSLQLSHQGECDWDLQPGIYYAKDIVRELDTLLEVISIRLGDAADPEALHRNIEASLAISGRESVLSLASADSEVTSRTELSKQADLIGRRLADWAREFSSQQWARSRCSAEALSSLLIRSRCDHHLWTPRVTDLLMGPLGGPIVMQLFNEYLHQIVLLRDALLPFDNWEEVPIELRADSSGKGLRYTEQARAQFLTELLVKQVSHQSIVRYAQAVLAPSLAPVGYGFQYRLGTILPASLTSNLATTTKYLLRWYPVYTTASNRISDPIEQLASVAFVYAYDDYYTAPRSQIGQGEPTVLNEHQASQQEDASSEARLHAFHTDGQTDRVQLQYQLQLRDTNIAVDLGQLLRGHRFVYHTEPNSQHAPSLAAIQEPAQPVIYSAQELLQQPGLVTSDAGIHLIETGGDPLIQRAVLGKLYPENVILLDRSSDEQLHAARQSGKGFGAKFLLH
>NZ_CP054612.1|WP_110042674.1|1309070_1309433_+|helix-turn-helix-transcriptional-regulator
MKLKTSGYSCTSEVTLELISGKWKIPVLSLLASHTRRYNEMQKLIPEITPKVLTIQLRELEASGLIHRKVYAVVPPKVEYMLTELGLQLMPALLQLCDFGTHYLTHIQNQDQQFVQPSKS
>NZ_CP054612.1|WP_110042673.1|1309502_1309811_-|hypothetical-protein
MMETIDLVQITISGDDIEVAELTFSAAQLVIVQEFGSKQWYVDTTDAGPSELLDHYYVSDNIAVQMTARTNDGRTYSGTAYVHANVPCQACVLRGDGELTEA
>NZ_CP054612.1|WP_174812555.1|1309927_1311253_+|VWA-domain-containing-protein
MMAIGKRLGIVLMFVAVLMLQACGSSDRDDTAANYESESKTTDTTATDSTAAADLGEPASGGSHTSEDKATTESKTDKPQDSRSDEDSATNNNNDDAIPAGTLTAGEWDDNVLWSQWKELMASYEGDRYRPYWQFYNFQRLEVKVTANGRPAVDAQVALTRSNGQDGWTARTNAAGVAYLFPILFEEQGGNAKYGVTVTAGKQKKQFENVDLQSGRVLEVELSEASDVSSLVDLMLVVDTTGSMADELEFLETELKDVVRRVGESNKGQLNIRVSPNFYRDVHDDYTVRSFPFTEDIDKAVGQIAKQEAFGGGDTPEAVEEALEDAIEEHDWSKQALTRLLFLVLDAPPHHEISIIKKMQELTALAADKGIRIIPIASSGVDIPTEHLLRYMAVATGGTYIFLTDHSGVGNEHLKPAVGEYEVRALNDLMVDVINRYVQGQ
>NZ_CP054612.1|WP_110042671.1|1311585_1312323_+|5-oxoprolinase-subunit-PxpB
MMNWTISPLGDRALVAELSVEAAGDSWVQVGAAADWLRQANVPWIIDLIPAYTTLTIMYDPIHVWKLAAQRNGLTVYEMAVRTVQGLLESVGNRSEQTARWMDVPVCYGGEFGPDLEQSAERSGMRVEQFVQAHAAGAYTVALVGFVPGFPYLAGLPAQLAQPRRDNPRARVPAGSVAIGGGQTGIYPLDVPGGWQLIGRTPLRLFDADKTEPALLRAGDIVRFVPIDEERFLALEAEEAAARER
>NZ_CP054612.1|WP_110042670.1|1312461_1313523_+|biotin-dependent-carboxyltransferase-family-protein
MSLIVQKPGLYTTVQDRGRNGHRAAGLTGGGAMDDYALRVANLLVGNEEGEAGLELTLTGPVLRAEEDLLIAITGADMAPHIDGHELATWRPVFVPAGATIRFGAARLGCRAYVAVAGGIGTAAALGSRSTDARARLGGIDGRPLRAGDAVPCGMAAGAVAPSPWATAWLAALAKRSSAAVAEGEGRPHGWAAWYAPPQAYGGASEAGIELRVMPGSEHGQYSEAARAAFYSGRYRVQAASDRMGVRLDGSPPLERIARNELLSHGIVPGVIQVPDGGQPIILAADCQTTGGYPKLAHVAAVDMPLLAQAKPGDWITFRPIGLDEAHGLYLATERSIRALEWAIRCRLPRDAS

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Crispr_ID: NZ_CP054612_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP054612_2

1376352-1376527

Orphan

Consensus_repeat	Method
ATAGAGGCGATTTATCGCTCCTA	CRISPRCasFinder
GGCGATTTATCGCTCCTAA	CRT

3 spacers

The CRISPR arrays of NZ_CP054612_2

>merge|NZ_CP054612|2|1376352-1376527|CRISPRCasFinder,CRT
ATAGAGGCGATTTATCGCTCCTATAGGATCCGGAGCTGCAAGGTTGCTGAGATAGGGGCGATTTATCGCTCCTAATAGTCTCTTAGGTGCCGGCTTGTTTGGATAGGAGCGAAATATCGCTCCTAATGGATCCGTATGAATTCAATTGCCTGATAGAGGCGATTTATCGCTCCAAA

>NZ_CP054612|2|2|1376352-1376526|CRISPRCasFinder
ATAGAGGCGATTTATCGCTCCTA	TAGGATCCGGAGCTGCAAGGTTGCTGAG
ATAGGGGCGATTTATCGCTCCTA	ATAGTCTCTTAGGTGCCGGCTTGTTTGG
ATAGGAGCGAAATATCGCTCCTA	ATGGATCCGTATGAATTCAATTGCCTG
ATAGAGGCGATTTATCGCTCCAA

>NZ_CP054612|2|1|1376357-1376527|CRT
GGCGATTTATCGCTCCTAT	AGGATCCGGAGCTGCAAGGTTGCTGAGATAGG
GGCGATTTATCGCTCCTAA	TAGTCTCTTAGGTGCCGGCTTGTTTGGATAGG
AGCGAAATATCGCTCCTAA	TGGATCCGTATGAATTCAATTGCCTGATAGA
GGCGATTTATCGCTCCAAA

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054612.1\|WP_110042612.1\|1386430_1388191_+\|phosphomethylpyrimidine-synthase-ThiC	unknown	unknown	gnl\|CDD\|236451
NZ_CP054612.1\|WP_110042805.1\|1382597_1383896_-\|histidine--tRNA-ligase	unknown	unknown	gnl\|CDD\|237097
NZ_CP054612.1\|WP_110042622.1\|1373100_1373784_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|223943
NZ_CP054612.1\|WP_174812559.1\|1372332_1373070_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|180753
NZ_CP054612.1\|WP_110042615.1\|1381692_1382481_-\|phosphatidylserine-decarboxylase	unknown	unknown	gnl\|CDD\|179544
NZ_CP054612.1\|WP_110042624.1\|1371894_1372296_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|379326
NZ_CP054612.1\|WP_110042617.1\|1378086_1378872_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|225117
NZ_CP054612.1\|WP_110042618.1\|1376608_1377907_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	unknown	unknown	gnl\|CDD\|181512
NZ_CP054612.1\|WP_174812737.1\|1388192_1389305_+\|ThiF-family-adenylyltransferase	unknown	unknown	gnl\|CDD\|181084
NZ_CP054612.1\|WP_110042614.1\|1384313_1384613_+\|hypothetical-protein	unknown	unknown	unknown
NZ_CP054612.1\|WP_110042613.1\|1384735_1385932_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340831
NZ_CP054612.1\|WP_110042619.1\|1375517_1376255_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|235546
NZ_CP054612.1\|WP_110042626.1\|1368617_1370300_-\|AarF/ABC1/UbiB-kinase-family-protein	unknown	unknown	gnl\|CDD\|223733
NZ_CP054612.1\|WP_110042620.1\|1374710_1375340_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
NZ_CP054612.1\|WP_110042628.1\|1366463_1367267_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
NZ_CP054612.1\|WP_110042616.1\|1379006_1381001_+\|beta-galactosidase	unknown	unknown	gnl\|CDD\|367090
NZ_CP054612.1\|WP_110042625.1\|1370840_1371635_-\|DUF817-domain-containing-protein	unknown	unknown	gnl\|CDD\|377545
NZ_CP054612.1\|WP_110042621.1\|1373856_1374708_-\|HAD-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|369792
NZ_CP054612.1\|WP_110042803.1\|1389375_1390176_+\|thiamine-phosphate-synthase	unknown	unknown	gnl\|CDD\|235054
NZ_CP054612.1\|WP_110042627.1\|1367256_1368576_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|377581

Protein	Function_ID	Function_description	E-value
NZ_CP054612.1\|WP_110042805.1\|1382597_1383896_-\|histidine--tRNA-ligase	gnl\|CDD\|237097	PRK12420, PRK12420, histidyl-tRNA synthetase; Provisional.	8.70521e-178
NZ_CP054612.1\|WP_110042622.1\|1373100_1373784_-\|HAD-family-hydrolase	gnl\|CDD\|223943	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only].	1.47854e-33
NZ_CP054612.1\|WP_174812559.1\|1372332_1373070_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|180753	PRK06924, PRK06924, (S)-benzoin forming benzil reductase.	2.58185e-66
NZ_CP054612.1\|WP_110042615.1\|1381692_1382481_-\|phosphatidylserine-decarboxylase	gnl\|CDD\|179544	PRK03140, PRK03140, phosphatidylserine decarboxylase; Provisional.	3.3972e-104
NZ_CP054612.1\|WP_110042624.1\|1371894_1372296_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|379326	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	5.5561e-13
NZ_CP054612.1\|WP_110042617.1\|1378086_1378872_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	2.71825e-24
NZ_CP054612.1\|WP_110042618.1\|1376608_1377907_-\|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme	gnl\|CDD\|181512	PRK08637, PRK08637, hypothetical protein; Provisional.	0
NZ_CP054612.1\|WP_174812737.1\|1388192_1389305_+\|ThiF-family-adenylyltransferase	gnl\|CDD\|181084	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated.	1.05346e-134
NZ_CP054612.1\|WP_110042612.1\|1386430_1388191_+\|phosphomethylpyrimidine-synthase-ThiC	gnl\|CDD\|236451	PRK09284, PRK09284, thiamine biosynthesis protein ThiC; Provisional.	0
NZ_CP054612.1\|WP_110042613.1\|1384735_1385932_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340831	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase. This family is most closely related to the GT4 family of glycosyltransferases and named after PimA in Propionibacterium freudenreichii, which is involved in the biosynthesis of phosphatidyl-myo-inositol mannosides (PIM) which are early precursors in the biosynthesis of lipomannans (LM) and lipoarabinomannans (LAM), and catalyzes the addition of a mannosyl residue from GDP-D-mannose (GDP-Man) to the position 2 of the carrier lipid phosphatidyl-myo-inositol (PI) to generate a phosphatidyl-myo-inositol bearing an alpha-1,2-linked mannose residue (PIM1). Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. The members of this family are found mainly in certain bacteria and archaea.	5.16647e-63
NZ_CP054612.1\|WP_110042619.1\|1375517_1376255_+\|SDR-family-oxidoreductase	gnl\|CDD\|235546	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG.	7.27296e-93
NZ_CP054612.1\|WP_110042626.1\|1368617_1370300_-\|AarF/ABC1/UbiB-kinase-family-protein	gnl\|CDD\|223733	COG0661, AarF, Predicted unusual protein kinase [General function prediction only].	1.67253e-159
NZ_CP054612.1\|WP_110042620.1\|1374710_1375340_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	5.20483e-10
NZ_CP054612.1\|WP_110042628.1\|1366463_1367267_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	3.89383e-82
NZ_CP054612.1\|WP_110042616.1\|1379006_1381001_+\|beta-galactosidase	gnl\|CDD\|367090	pfam02449, Glyco_hydro_42, Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyzes the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.	1.09648e-145
NZ_CP054612.1\|WP_110042625.1\|1370840_1371635_-\|DUF817-domain-containing-protein	gnl\|CDD\|377545	pfam05675, DUF817, Protein of unknown function (DUF817). This family consists of several bacterial proteins of unknown function.	7.50281e-123
NZ_CP054612.1\|WP_110042621.1\|1373856_1374708_-\|HAD-hydrolase-family-protein	gnl\|CDD\|369792	pfam08282, Hydrolase_3, haloacid dehalogenase-like hydrolase. This family contains haloacid dehalogenase-like hydrolase enzymes.	2.10178e-43
NZ_CP054612.1\|WP_110042803.1\|1389375_1390176_+\|thiamine-phosphate-synthase	gnl\|CDD\|235054	PRK02615, PRK02615, thiamine phosphate synthase.	4.84039e-83
NZ_CP054612.1\|WP_110042627.1\|1367256_1368576_+\|ABC-transporter-permease	gnl\|CDD\|377581	pfam05975, EcsB, Bacterial ABC transporter protein EcsB. This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters.	1.9934e-82

>NZ_CP054612.1|WP_110042619.1|1375517_1376255_+|SDR-family-oxidoreductase
MGKLQGKVAVITGGASGIGAATARLFVQEGAKVVLVDLNEEKGKAFEQELKSQNAEALFVKANITSEEEVAGVFKQTIETFGKVDVVFNNAGIGRVHASHDLEYSEWRNTVNVDLDGVFLVAREAIREMLKAGGGSIVNTASMYGWVGSPGSAAYNAAKGGVINLTRSLALEYAENNIRVNALCPGFIDTPIIPEESKQVLASLTPMKRLGQAEEMAKAVLFMASDDSTFMTGNTLTVDGGYTAQ
>NZ_CP054612.1|WP_110042620.1|1374710_1375340_-|TetR/AcrR-family-transcriptional-regulator
MIDELHSTSTRRNRTKEHFKLALIKLIKEKGYHAISVKDIVDAAAYNRSTFYVHYQDKIDLAEELLKTMLEGLEASVGVPYEHGQTVYTSKLNAPSFNIVAYIYEHRDFFELIKYDDTLPGLHTELPRTIQNIYNEQFVFETINNMPVNMDYFKQYTAYGFYGLIINWIREDFKESQEAFIQAVIDLTRTHMHSFKFVGNKIRSEGGTT
>NZ_CP054612.1|WP_110042621.1|1373856_1374708_-|HAD-hydrolase-family-protein
MKRYYLTDLDGTLLQSNALLSDYTVHTLTTALEQGAVISYATARSYRSSKTVTSRIDWRYPVVLYNGSMLLDPTTGKVLGGHWLDTTVSNEVIELGRSMNVTPFLFALDENDNERVLHERLSRYGDTEFFASRPGDPRFAEVEHLTCPPSYRTMIVTYIGRREELEPLFRAIADRYGPAVHLHFMLDNYIKDHYFLEISHPLANKEHGLNLWCEQVGCRPEDVTVFGDNLNDIGMFKRAGRRLAVSSAHPELKLMATEVIGSNDENGVARVIEADLRGGSEQH
>NZ_CP054612.1|WP_110042622.1|1373100_1373784_-|HAD-family-hydrolase
MAELRAIIFDLDETLADRTSTRDRFVKVWIEQYWAGRDHDPEQLHSVFCRLDNNGYRAKDELYHLLVEELTWTDPPTEAEHTAFWQEHFPKLTEPMDNLHNTLDYFHRQGLKIGLITNGREHVQRAKIDTLAIGRYFDAAYISEAVGVKKPNGAIFNQCLHALEVAPEEAWYVGDHPINDVRGSAEAGITPIWLSQGKEWKEEHVVKPAHTVQSLHDLIQLYESLHG
>NZ_CP054612.1|WP_174812559.1|1372332_1373070_-|SDR-family-NAD(P)-dependent-oxidoreductase
MRYYIVTGSSKGIGSELALQLLGPEHHVIGISRTPNDSLSAYASQHGHRYDWLPFDLTRSEQIGTLAEQLLVIIDRLSAESITLINNAATLTPLDTIDHLNCAQLSHALHLNLMTPMMLTSTLIQLTNGYPIERLIINISSGSGSYPAPGMSVYCSAKAALNMFSQCIQAESAIHGRLRCVSVDPGMVDTAMQEVARSDAHDHPMRGFFTHAEQNHQLRSPQYVAQRILSDVIFSNSGSHHIVID
>NZ_CP054612.1|WP_110042624.1|1371894_1372296_-|GNAT-family-N-acetyltransferase
MTTITYSTTNIVSAEQLSLLFEHAGMKRPIHDLPRLQKMLDNADITVSAWDGDRLVGIARAITDYAYCCYLSDLAVDDDYQKNGIGSKLVDEVRQVIGEQCSLILISAPGAMDYYPKIGFTLSDKAYVIPRVK
>NZ_CP054612.1|WP_110042625.1|1370840_1371635_-|DUF817-domain-containing-protein
MQNFAIQLIRFGWNQALSCLFAVVIFASMALTHFVDIPLIPRYDFLLLVCVLMQWILIRTKLETIDELKVIIVFHLIGLALELYKVHIGSWSYPAEGWLKIGGVPIYSGFMYASVASYVCQAWRRFKLTISGWPPPLVSIALSAAIYLNFFTNHYIYDFRYLLMLALLPVFGRAVVRFTVGARTYAMPMIVSYLLIGFFIWIAENISTYFKVWKYPNQEVAWHVVHWGKIGSWFLLIIISVIIVVELKRLKETLSGTKRSDVIS
>NZ_CP054612.1|WP_110042626.1|1368617_1370300_-|AarF/ABC1/UbiB-kinase-family-protein
MIGINRRIRHLQRYRDIAKAFVRNGFGFLVKELGLADRFPISSFRSEEDREHKGKTTGERIRLFLEELGPTFVKFGQIASTRPDLLPADIIAELVKLQDSVPPIPYHEAAAVLEAELGAPVEELFARFDQTPVAAASIGQVHLARLPDGRAVAVKIQRPNIQEQIETDLEILDNLSRIAEHRMEWAANYQLRERISELSQSLRAELDYTIEGRNAERMAKAFERDHSIHIPTIYWDYSSRRVLTMELINGYKITDNEALSELGITPKRIAERITHAMFHQIFEEGLFHADPHPGNLLIEHNGVIGMIDFGMVGRMTPSMKTNFGSLIIAMRRNSTSGIIRAIEALGVLPADIDMRKLRDDIDLLRDKYYDVPLSRVSLGESVSDLFTVAYNHRIRIPSDFMLLGKTLLTLEGVVSSLDPEFSIISVAEPFGRRLFLDRINPRSFAENAFQQVSDYADLLADLPETLRDASSVVRKGKLRTEMSIPELETLLRKIDRVGNRLSFSIVLLSFSIIMVGLIIGSSLGRQSSIIWHFPVIEIGFGIAAFMFLFLLTAIFRSGRF
>NZ_CP054612.1|WP_110042627.1|1367256_1368576_+|ABC-transporter-permease
MADRTQRSTVGSSQREQQRMNQPYVNRFEPDQLWSSRAAAFRGELKPYVGYMAQSGFPGVMMLMLILATVGYAALVRDLPAHFPVTLFGVALVIGFTCWSPLRTWLQPADTVFLLPRELEMHQYLRRSFRYTGIPTLIGVWFSLLAYWPMYEHGEGTANAAVLLLALAALKAGNIAGAWQERRTAEPGARRFLRFLRWVLTGVTLAALFRLEPWKAILFGLLAAALMAVIYRLPRKHALPWETLIREEIRTRRRYYRFLALFIDVPTQAPRIARRSYAAWIGRAIKFAQRETYVYLYTMTLLRTELGGMLIRLTLLGMLVLYWLGDAAWLDGWGSTIVFVLVAGIIGLQLGSLRHSHKYAVWGHLYPLPAQRRIDSLATVDRMAYIVCTLLMWLPGGIALAVHGNPLQALAAPAAALLYGMLRRPSVVRRKALKDDEED
>NZ_CP054612.1|WP_110042628.1|1366463_1367267_+|ABC-transporter-ATP-binding-protein
MNQDTKHADRTGHGPALEVTDLIGGYSPRRPVLHNLTFDVRPGEIVGLIGLNGAGKSTAIKHILGLMQPHAGEVKVNGAKLDADPQRYRGSIAYVPESPVLFDELTVDEHLRLTGMAYGVEASAFDGRLEQLLDEFHMRPKRGAFAEHLSKGMKQKVMIMNALMADPPLFIIDEPFLGLDPLGIRSLLDRLVEVKKAGAAVLMSSHILSTVETYCDRYIVLHHGRIAAQGKLRDVLQAAGMTSGTLDEAFFRLVSETAGGGGMSDGR
>NZ_CP054612.1|WP_110042618.1|1376608_1377907_-|aminotransferase-class-I/II-fold-pyridoxal-phosphate-dependent-enzyme
MNPLAQQLNETLERETPHVYAMLSSLGKSIYFPKVGILSQSAEAKAKAKKFNATIGIAIENGQPMHLKVIQDTLSAYDPKDIYEYAPPAGKPELRSAWRAKMIKENPSVEGKGFGTPIVTNALTHGLSIVSDLFADVGDAVIIPNKNWENYELTFGVRRGAEIVEYELYNSDNQFNAAGLRDALFAQKDKGKAIVILNFPNNPTGYTPGPAEGDAIVAAIRDAAEAGINVVAVADDAYFGLFFEDSLHESLFGKLAGLHERVLAVKVDGATKEEYVWGFRVGFITYASQSEAALAALEQKTTGIIRSTISSGPHPSQTFVLRALQAPEFEEQKAEKYAIMKRRANRVKELLDSGRYGDVWDYYQFNSGYFMCLKLTKVSAEAVRQRLLSEYGVGTIALGDTDLRVAFSCIEEGDLEELFDTIYKAVTDLLNA
>NZ_CP054612.1|WP_110042617.1|1378086_1378872_+|helix-turn-helix-domain-containing-protein
MLDVPSSSFVLLSYFAKISCEPAWKWARREKPMANYDLFYVWSGEGELELNGAVYEIGAGSCFLFRPGDYTSATHNPQKPLVLTYIHFDVSEQTQYVPNRYRVFDETVDFEYLLSRYVRLFLVKTFAAEEEAKLLLKQMMIHLLRTDQEPLIEKRGSNQLTEVIHEIANYIRQHPGVPHRVEDLAKRAQLSPRYFSIKFKEYIGQSVQSYMIQTRIDRAQHLLAHAGMNVTEVADALGYRDIFFFSRQFKQYTGRNPSEIR
>NZ_CP054612.1|WP_110042616.1|1379006_1381001_+|beta-galactosidase
MKIGVVYYPEHWDRSMWEQDARLMKETGVRVVRVAEFAWSRLEPQEGVFQFDWLDEAIDLFHRYGLEVVIGTPTMTPPVWLTTNYPDVLPIDGQGHPQQAGVRGHRCYNSPSMRSRTTAIVEKLAARYGNHPAVIGWQTDNEFMLNLCHCEACTSKFRDRVKEQFNGDLDALNRAWGTVVWSGEYSDWSQVRTPIGGSPYQNPSLLLEFRRFQNDSIIAFQQIQVDIVRRLCPNHFITHNTWTAPIPLDNPRLYAPLDFASFDYYPNTSPDKIATNPYSGALLLDRVRGFKRRNYWIMEQLSGPPGAWMPMWRAPYPGFIRAFSWQSFARGADAVVHFRWRSGTVGAEQFWHGLIDHSNVPGRRFAEFAQLTEEVNRVASLLEGTSVRSEAAILYSHEHHSAFQLQPQSEGFDYYENLKPIHRALVKQGIGVDVIDWRESLDSYKLVVAPALYLLDEATAESLKQYAAGGGTLVLSARTGVKNEHNICWMQPLPGPLAEAAGVVVTEYDPVGHDAQQLVAADGAVYKCAQWCDLLEPSTAEVLARYGEGTGFYTGTPAVTSNRYGKGTVVYVGTVPEEAYWSDLLGSLAADCGVERWANLSEGVQVTLRGSDDGRKVWFVLNLTREPKQLQLPMAMRSLLDGRDGIGGVELEPYGVALLQRGQE
>NZ_CP054612.1|WP_110042615.1|1381692_1382481_-|phosphatidylserine-decarboxylase
MWTWLFRALTELTSRKSISRLAGSIAQSSASRRFIPRFIRVYNIRVEEAEKPLKDYKTLNEFFTRRLKPGMRTVDTDRTVVVSPVDALITGAGPISAGTIVNVKGQDYTIDELLNQSPRTENYKNGYYAVLYLSPSDYHRIHVPVDGTIEERDYIPGKVYPVNEFGLRHMRRVLSRNERLVTYIRNHSGETAVVKVGALNVSSIRYTEPQTRQAEKGAELAYFEFGSTVVLLMEDDTFIPRADLAVGLRVKMGERLGTLSSE
>NZ_CP054612.1|WP_110042805.1|1382597_1383896_-|histidine--tRNA-ligase
MSNVKGTVDYYGVEQAQRSRMIRQMEELFTLYDYEAIETTILNEMELLTAKYSGGDEIVQEMYTLRDRGQRELGLRYDLTVPFSKLVAAYAGLPMPFRRYEFGKVFRDGPVKRGRLREFTQCDVDVVGIQGPEAEAELLSLAARVYETLGIPVVLRWNNRRFLAEWLAAAGIPEELGQTVMLTLDKIAKLGLDAVRAELIDKGVTYSAADTVLHAIMADEQKEPVAAFERLCTTFGISDLPGAGEVRALMGLLDAIGLSPVCRFDPSLSRGLSFYTGTVYEAFDASGSYLSSLGGGGRYDAIIGQLAGNPAVLYPTVGFSFGLEPIMALARERLVPIEAAPVVVIPIGGMVAEAMRTAEAIRACGIRTRLSPVGRKVGKALASAASAGSRFAILIGEDETKLGKVQLRDMEARIEETLALEEAIYRIERVLL
>NZ_CP054612.1|WP_110042614.1|1384313_1384613_+|hypothetical-protein
MEWTIGISLAIVTVVLIWCFVRWTAVRRLADGLASFALIVAGAAVSGSILRVIRDDTVYMTEVHSVLLNPAFLIGGGYVLLYATARIGANAFLSNDSSR
>NZ_CP054612.1|WP_110042613.1|1384735_1385932_+|glycosyltransferase-family-4-protein
MSRPLKIAYVTPGAYPLPSLTGGSVERVIEHIVPLLTGSVEPRIYGRTAAGLPRKGVWKGVVCERFAAANKSRYAASVSRAMTTFKPDIIEVENRPHLLIRLSRQHPYARMWLNLHSSTFIQPRHISNFQLRQSFRLAETIIVNSDYLRSIVAAQAPEAASKIVVVHLGTDMHRFPSVQSSEGGARRNRLRRAYGWTDRKVILYLGRLIPLKGVHHLIELMPKLLKRHPNAMLVIVGSPQYGSKRTSVYSRRLKRAAAKLGGSVRFIPYVPYNEVPDWLLGADVLAVPSVRREAFGLVNVEAMAAGIPVVASRIGGISEIVQDGETGLLAEPSSLTADMLTKLDHLLTNDQLRLEMGRRSREKAETYFTWQAAAERYTVRTGITNALHNSRFGWKLQG
>NZ_CP054612.1|WP_110042612.1|1386430_1388191_+|phosphomethylpyrimidine-synthase-ThiC
MPILSRPLPGSRKVYIQGSQSDIQVPMREIALAPSVIRDQETSNEPIRVYDASGPYTDTNYEADIRQGLPSVRGRWIEARSDTESYEGRAIKPEDNGFASEERAAIKGLEPFPGLFRKPLRAKAGGNVTQMHYARRGIITPEMEYIAIREGMDPEFVRCEVAEGRAIIPANINHPEGEPMIIGRNFHVKINANIGNSAVASSIDEEVEKMTWATRWGADTIMDLSTGKNIHTTREWIIRNSPVPVGTVPIYQALEKVNGVAEDLTWEVFRDTLIEQAEQGVDYFTIHAGVLLRYVPLTAKRVTGIVSRGGSIMAAWCLAHHQENFLYTHFEEICKIMKAYDVSFSLGDGLRPGSIADANDAAQFAELETLGELTKIAWKHDVQVMIEGPGHVPMHMIKENVDKQMAICSEAPFYTLGPLTTDIAPGYDHITSAIGAAMIGWFGTAMLCYVTPKEHLGLPNKDDVREGVIAYKIAAHAADLAKGHPRAQIRDNALSKARFEFRWRDQFHLSLDPERAMEYHDETLPAEAAKSAHFCSMCGPKFCSMRITQDIRDYAADHGLDTEEAIEIGMQEKSAAFRTGGSSIYG
>NZ_CP054612.1|WP_174812737.1|1388192_1389305_+|ThiF-family-adenylyltransferase
MAQHPIEIYEAVQDEAAFEDRYSRQLRFGPIGSAGQDRLRSARVLVVGTGALGASLAQHMTRAGVGVVRLADRDYVEPSNLQRQMLFDEEDARSATPKAVAAARKLKRMNGGVRIEAHVVDVSKRTLGYLLAGVDLVLDGTDNAATRLALSDACFSLGIPLVYGGVTASEGMSAALIPGRTACLRCLIGDSAADDGTDTCDTVGVISPAVEFVASLQAAEALKWLSGNREAMRGTWVTADIWTFRVRELKLPGGRSRCACCGTGASTADNRLRQDDKPAIEAAVMCGRDSVQVTLGEAIALDVVRPLLEERGCTLTVNPYLTKAELPDGKRLVLFSDGRVLVQGTSDAGEAIRLCTDMLQPHREGESIVG
>NZ_CP054612.1|WP_110042803.1|1389375_1390176_+|thiamine-phosphate-synthase
MIDVIEQALIGGADIVQLRDKTASKQDIRENAHKLRQLTRRYGVPLIINDHIDIALEAEADGVHLGQDDLSLAEARRLLGPDRIIGISTHSIEQGLAAQAGGADYIGVGPVYPTGTKPGRAAVTTSYVQEAAEQIRIPFVAIGGITLGNVDTVIAAGASRVCAVSEIVGADDPAAVCRAFKARLHAAAPQRSEVQADDFAGTGVIVNGVAQRTTARTVWELICQHRLEDRRVVVELDGEIVVREEWSCTPIHEGAAVELVHFVGGG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

692186 : 701010

Bacillus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_110045746.1\|692186_693143_-	D-2-hydroxyacid dehydrogenase	A0A2R8FCS0	Cedratvirus	1.6e-21	28.6
WP_110045745.1\|693235_693472_+	hypothetical protein	NA	NA	NA	NA
WP_110045744.1\|693641_694580_-	thioredoxin-disulfide reductase	A0A2K9L4X0	Tupanvirus	2.0e-69	46.5
WP_110045743.1\|694772_695453_+	response regulator transcription factor	W8CYM9	Bacillus_phage	4.9e-73	61.9
WP_110045742.1\|695449_696850_+	HAMP domain-containing protein	W8CYF6	Bacillus_phage	2.3e-61	43.9
WP_110045741.1\|696966_697851_+	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	1.1e-80	55.8
WP_110045740.1\|697900_698290_+	metal-sensing transcriptional repressor	NA	NA	NA	NA
WP_110045739.1\|698727_701010_+	copper-translocating P-type ATPase	A0A218MNH6	uncultured_virus	2.0e-107	37.7

DBSCAN-SWA_2

799080 : 810819

Mollivirus(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_110046558.1\|799080_800376_+	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	1.1e-20	26.5
WP_110046557.1\|801001_801895_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0M4JBD3	Mollivirus	5.5e-40	33.6
WP_110046556.1\|801977_802220_+	phosphoribosylformylglycinamidine synthase subunit PurS	A0A0E3FJ99	Synechococcus_phage	7.6e-05	31.2
WP_110046555.1\|802223_802919_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
WP_110046554.1\|802896_805143_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.3e-159	42.4
WP_110046552.1\|805127_806606_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	1.3e-49	32.0
WP_110046551.1\|806658_807705_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	9.8e-73	48.2
WP_110046549.1\|807704_808313_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	8.0e-27	38.7
WP_146216923.1\|808754_808970_+	hypothetical protein	NA	NA	NA	NA
WP_110046543.1\|809271_810819_+	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	Q58MG4	Prochlorococcus_phage	3.8e-73	51.6

DBSCAN-SWA_3

2245859 : 2253055

Chrysochromulina_ericina_virus(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_174812627.1\|2245859_2246510_-	glycosyltransferase	A0A0N9QZQ5	Chrysochromulina_ericina_virus	4.4e-15	30.5
WP_110045329.1\|2246857_2247949_+	glycosyltransferase family 4 protein	A0A2P0VNG4	Tetraselmis_virus	4.1e-05	27.9
WP_110045330.1\|2248053_2249349_-	UDP-glucose/GDP-mannose dehydrogenase family protein	A0A127AXI2	Bacillus_phage	3.4e-83	40.8
WP_174812628.1\|2249345_2250338_-	NTP transferase domain-containing protein	H9NC64	Sphingomonas_phage	2.6e-30	33.3
WP_110045332.1\|2250528_2251554_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
WP_174812629.1\|2251594_2252245_+	glycosyltransferase	A0A0N9QZQ5	Chrysochromulina_ericina_virus	9.8e-15	31.5
WP_110045334.1\|2252275_2253055_+	glycosyltransferase	A0A0N9QZQ5	Chrysochromulina_ericina_virus	1.8e-15	27.9

DBSCAN-SWA_4

2612323 : 2622686

Staphylococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_110043447.1\|2612323_2612755_+	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	1.8e-20	44.9
WP_110043446.1\|2613571_2614702_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	2.8e-49	36.4
WP_110043445.1\|2614707_2615379_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.3e-38	43.9
WP_110043444.1\|2615571_2616768_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	9.4e-104	49.9
WP_110043443.1\|2616806_2617274_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	1.8e-39	53.9
WP_110043442.1\|2617372_2618155_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	4.5e-06	23.5
WP_110043441.1\|2618123_2618771_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	2.4e-13	30.5
WP_174812646.1\|2618876_2619557_+	DUF2953 domain-containing protein	NA	NA	NA	NA
WP_110043439.1\|2619748_2620876_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_110043438.1\|2620877_2622686_+	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	9.7e-44	29.3

DBSCAN-SWA_5

2895907 : 2952631

Bacillus_phage(27.27%)

tail,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_110044971.1\|2895907_2896432_+\|tail	phage tail protein	E3T4R8	Cafeteria_roenbergensis_virus	4.5e-18	37.3
WP_110044972.1\|2896476_2896983_+\|tail	phage tail protein	A0A2R3ZZT3	Microbacterium_phage	3.7e-17	38.0
WP_110044973.1\|2896999_2897536_+\|tail	phage tail protein	E3T4R8	Cafeteria_roenbergensis_virus	8.7e-17	34.9
WP_110044974.1\|2897608_2898592_-	aldo/keto reductase	NA	NA	NA	NA
WP_110044976.1\|2898768_2899803_+	leucine-rich repeat domain-containing protein	NA	NA	NA	NA
WP_110044977.1\|2899993_2900998_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
WP_110044978.1\|2901020_2902097_-	tyrosine recombinase XerS	A0A1B1P7C7	Bacillus_phage	8.1e-06	27.5
WP_110044979.1\|2902286_2906870_+	DEAD/DEAH box helicase	NA	NA	NA	NA
WP_110044980.1\|2906930_2907893_+	MoxR family ATPase	NA	NA	NA	NA
WP_110044981.1\|2907904_2909008_+	DUF58 domain-containing protein	NA	NA	NA	NA
WP_110044982.1\|2909004_2910339_+	DUF4129 domain-containing protein	NA	NA	NA	NA
WP_110044983.1\|2910491_2911145_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
WP_110044984.1\|2911332_2912505_+	DUF3533 domain-containing protein	NA	NA	NA	NA
WP_110044985.1\|2912646_2914227_+	spore germination protein	NA	NA	NA	NA
WP_110044986.1\|2914255_2915449_+	Ger(x)C family spore germination protein	NA	NA	NA	NA
WP_110044987.1\|2915469_2915730_+	hypothetical protein	NA	NA	NA	NA
WP_110044988.1\|2915734_2917111_+	endospore germination permease	NA	NA	NA	NA
WP_174812662.1\|2917170_2918352_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
WP_110044990.1\|2918505_2920788_+	glycoside hydrolase family 3 C-terminal domain-containing protein	NA	NA	NA	NA
WP_110044991.1\|2921062_2921710_+	AhpC/TSA family protein	NA	NA	NA	NA
WP_110044992.1\|2921771_2922377_-	AAA family ATPase	NA	NA	NA	NA
WP_110044993.1\|2923079_2923367_+	TetR/AcrR family transcriptional regulator C-terminal domain-containing protein	NA	NA	NA	NA
WP_146216890.1\|2923741_2924710_-	hypothetical protein	NA	NA	NA	NA
WP_110044995.1\|2924760_2926464_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	5.2e-39	27.8
WP_110044996.1\|2926450_2928229_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	4.1e-47	29.3
WP_110044997.1\|2928330_2929611_-	diaminobutyrate--2-oxoglutarate transaminase	NA	NA	NA	NA
WP_110045027.1\|2929688_2930183_-	diaminobutyrate acetyltransferase	NA	NA	NA	NA
WP_110044998.1\|2930240_2930636_-	ectoine synthase	NA	NA	NA	NA
WP_110044999.1\|2930672_2931494_-	3'(2'),5'-bisphosphate nucleotidase CysQ	NA	NA	NA	NA
WP_174812750.1\|2931480_2932155_-	adenylyl-sulfate kinase	A0A2P1ELS9	Moumouvirus	2.3e-27	44.0
WP_110045000.1\|2932248_2932779_-	DinB family protein	NA	NA	NA	NA
WP_174812663.1\|2932820_2933999_-	DUF4915 domain-containing protein	NA	NA	NA	NA
WP_110045002.1\|2934056_2934800_-	YqcI/YcgG family protein	NA	NA	NA	NA
WP_110045003.1\|2934852_2935740_-	hypothetical protein	NA	NA	NA	NA
WP_110045004.1\|2935749_2936805_-	hypothetical protein	NA	NA	NA	NA
WP_174812664.1\|2936845_2937106_-	acyl carrier protein	NA	NA	NA	NA
WP_110045006.1\|2937182_2938718_-	amino acid adenylation domain-containing protein	A0A2K9KZV5	Tupanvirus	3.3e-61	31.8
WP_110045007.1\|2939848_2940985_+	hypothetical protein	NA	NA	NA	NA
WP_110045010.1\|2941856_2942186_-	hypothetical protein	NA	NA	NA	NA
WP_110045011.1\|2942175_2942802_-	hypothetical protein	NA	NA	NA	NA
WP_110045012.1\|2942832_2943261_-	metal-dependent hydrolase	NA	NA	NA	NA
WP_110045013.1\|2943768_2943978_-	MafI family immunity protein	NA	NA	NA	NA
WP_110045014.1\|2944205_2945402_+\|transposase	IS110 family transposase	NA	NA	NA	NA
WP_110045015.1\|2946015_2948280_-	restriction endonuclease	A0A1L2BY82	Clostridium_phage	2.1e-64	26.5
WP_110045016.1\|2948576_2949797_+	protein kinase	A0A2K9V991	Bandra_megavirus	2.0e-08	24.7
WP_110045017.1\|2950613_2951060_+	hypothetical protein	NA	NA	NA	NA
WP_174812665.1\|2951456_2951747_+\|transposase	transposase	NA	NA	NA	NA
WP_174812751.1\|2951758_2952631_+\|transposase	IS3 family transposase	Q6H9S3	Enterobacteria_phage	1.1e-24	29.0

DBSCAN-SWA_6

3761588 : 3828974

Bacillus_phage(14.29%)

tail,protease,integrase,tRNA

attL 3825807:3825820|attR 3829080:3829093

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_110043065.1\|3761588_3762989_-\|protease	ATP-dependent protease ATPase subunit HslU	A0A2H5BJT2	Erwinia_phage	1.5e-44	29.8
WP_110043064.1\|3763045_3763588_-\|protease	ATP-dependent protease subunit HslV	NA	NA	NA	NA
WP_110043063.1\|3763823_3765143_-\|tRNA	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	NA	NA	NA	NA
WP_110043062.1\|3765227_3767342_-	type I DNA topoisomerase	A0A2K9L1Q2	Tupanvirus	1.0e-108	39.7
WP_174812720.1\|3767364_3768486_-	DNA-protecting protein DprA	NA	NA	NA	NA
WP_110043060.1\|3768684_3769617_-	succinate--CoA ligase subunit alpha	NA	NA	NA	NA
WP_110043059.1\|3769669_3770830_-	ADP-forming succinate--CoA ligase subunit beta	NA	NA	NA	NA
WP_110043058.1\|3771180_3772737_+	YifB family Mg chelatase-like AAA ATPase	NA	NA	NA	NA
WP_110043057.1\|3772748_3773129_-	YraN family protein	NA	NA	NA	NA
WP_110043056.1\|3773121_3773454_-	EscU/YscU/HrcU family type III secretion system export apparatus switch protein	NA	NA	NA	NA
WP_110043055.1\|3773450_3775499_-	hypothetical protein	NA	NA	NA	NA
WP_110043054.1\|3775659_3776277_-	ribonuclease HII	G4YAY0	Emiliania_huxleyi_virus	1.2e-22	40.1
WP_110043053.1\|3776314_3777187_-	ribosome biogenesis GTPase YlqF	NA	NA	NA	NA
WP_110043052.1\|3777260_3777959_-	signal peptidase I	NA	NA	NA	NA
WP_110043051.1\|3778087_3778429_-	50S ribosomal protein L19	NA	NA	NA	NA
WP_110043050.1\|3778580_3779366_-\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
WP_110043049.1\|3779370_3779904_-	ribosome maturation factor RimM	NA	NA	NA	NA
WP_110043048.1\|3780193_3780427_-	KH domain-containing protein	NA	NA	NA	NA
WP_110043047.1\|3780452_3780725_-	30S ribosomal protein S16	NA	NA	NA	NA
WP_110043046.1\|3780762_3782133_-	signal recognition particle protein	NA	NA	NA	NA
WP_110043278.1\|3782152_3782530_-	YlxM family DNA-binding protein	NA	NA	NA	NA
WP_110043045.1\|3782675_3783686_-	signal recognition particle-docking protein FtsY	NA	NA	NA	NA
WP_110043044.1\|3783724_3787315_-	chromosome segregation protein SMC	NA	NA	NA	NA
WP_110043043.1\|3787559_3788255_-	ribonuclease III	A0A167RGU4	Powai_lake_megavirus	9.8e-21	31.0
WP_110043042.1\|3788244_3789483_-	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA
WP_110043041.1\|3789648_3789882_-	acyl carrier protein	B2ZXV3	Ralstonia_phage	4.6e-07	36.6
WP_110043040.1\|3789977_3790727_-	3-oxoacyl-[acyl-carrier-protein] reductase	Q06VL0	Trichoplusia_ni_ascovirus	2.5e-22	36.5
WP_110043039.1\|3790815_3791751_-	ACP S-malonyltransferase	NA	NA	NA	NA
WP_174812721.1\|3792383_3793373_-	ketoacyl-ACP synthase III	NA	NA	NA	NA
WP_110043038.1\|3793383_3794373_-	phosphate acyltransferase PlsX	NA	NA	NA	NA
WP_174812758.1\|3794356_3794953_-	transcription factor FapR	NA	NA	NA	NA
WP_006036546.1\|3795437_3795611_-	50S ribosomal protein L32	NA	NA	NA	NA
WP_110043036.1\|3795657_3796182_-	DUF177 domain-containing protein	NA	NA	NA	NA
WP_110043035.1\|3796401_3797664_+	nucleotidyltransferase	NA	NA	NA	NA
WP_110043034.1\|3797843_3799091_+	nucleoside recognition protein	NA	NA	NA	NA
WP_174812722.1\|3799112_3799658_-	pantetheine-phosphate adenylyltransferase	A0A1B1IVQ3	uncultured_Mediterranean_phage	2.7e-26	40.6
WP_110043032.1\|3799620_3800223_-	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	NA	NA	NA	NA
WP_110043031.1\|3800451_3801999_-	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA
WP_110043030.1\|3802161_3803094_+	proline dehydrogenase family protein	A0A2H4PQT6	Staphylococcus_phage	9.4e-51	37.5
WP_110043029.1\|3803130_3804051_+	arginase	A0A1V0SJM8	Klosneuvirus	1.7e-20	33.2
WP_110043025.1\|3805045_3805651_-	lysozyme	Q94ML9	Bacillus_amyloliquefaciens_phage	2.0e-30	53.4
WP_110043024.1\|3805640_3805850_-	hypothetical protein	NA	NA	NA	NA
WP_110043023.1\|3805854_3806115_-	hypothetical protein	A0A0S2GM64	Bacillus_phage	1.3e-10	39.3
WP_110043022.1\|3806218_3806431_-	hypothetical protein	NA	NA	NA	NA
WP_110043021.1\|3806501_3807053_-	hypothetical protein	NA	NA	NA	NA
WP_110043020.1\|3807148_3809083_-\|tail	phage tail protein	NA	NA	NA	NA
WP_110043019.1\|3809100_3811476_-	DUF2817 domain-containing protein	A0A0A0RV50	Bacillus_phage	1.4e-21	32.1
WP_110043018.1\|3811490_3812300_-\|tail	phage tail family protein	NA	NA	NA	NA
WP_110043017.1\|3812296_3817336_-\|tail	phage tail tape measure protein	NA	NA	NA	NA
WP_174812723.1\|3817391_3817556_-	hypothetical protein	NA	NA	NA	NA
WP_110043015.1\|3817581_3817905_-	hypothetical protein	NA	NA	NA	NA
WP_174812724.1\|3817984_3818662_-	hypothetical protein	NA	NA	NA	NA
WP_110043013.1\|3818795_3819002_-	hypothetical protein	NA	NA	NA	NA
WP_110043012.1\|3819013_3819445_-	hypothetical protein	NA	NA	NA	NA
WP_110043011.1\|3819449_3820031_-	hypothetical protein	NA	NA	NA	NA
3825807:3825820	attL	NA	NA	NA	NA
WP_174812461.1\|3826992_3827742_-	hypothetical protein	A0A2P1JTW4	Anoxybacillus_phage	3.3e-22	32.6
WP_110043002.1\|3827762_3828005_-	hypothetical protein	NA	NA	NA	NA
WP_174812462.1\|3828413_3828974_-\|integrase	tyrosine-type recombinase/integrase	Q7Y4J2	Streptococcus_phage	6.9e-33	40.9
3829080:3829093	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. NZ_CP054610

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

634 : 19104

Brevibacillus_phage(25.0%)

terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_110047252.1\|634_1132_+	helix-turn-helix domain-containing protein	A0A1L2JY20	Aeribacillus_phage	2.4e-13	34.3
WP_110047253.1\|1128_1494_+	hypothetical protein	NA	NA	NA	NA
WP_174812453.1\|1545_2484_+	hypothetical protein	H7BVI6	unidentified_phage	3.4e-24	51.5
WP_110047430.1\|2511_3003_+	hypothetical protein	NA	NA	NA	NA
WP_110047432.1\|3174_4407_+	DUF2800 domain-containing protein	S5MUB5	Brevibacillus_phage	5.4e-131	60.3
WP_110047433.1\|4509_5103_+	DUF2815 family protein	A0A2I7QIM8	Bacillus_phage	6.3e-69	69.1
WP_110047434.1\|5291_5624_+	hypothetical protein	A0A160DH61	Gordonia_phage	1.2e-19	48.2
WP_110047473.1\|5665_6127_+	hypothetical protein	A0A191ZDH8	Pseudoalteromonas_virus	3.0e-10	43.5
WP_110047435.1\|6123_8067_+	hypothetical protein	S5M5X4	Brevibacillus_phage	7.0e-258	67.7
WP_110047436.1\|8076_8679_+	hypothetical protein	NA	NA	NA	NA
WP_110047437.1\|8705_8996_+	hypothetical protein	A0A142F1A5	Bacillus_phage	9.7e-15	49.4
WP_174812454.1\|9198_9366_+	hypothetical protein	NA	NA	NA	NA
WP_110047439.1\|9387_9636_+	hypothetical protein	NA	NA	NA	NA
WP_110047440.1\|9661_11344_+	DNA cytosine methyltransferase	H9C171	Pectobacterium_phage	7.1e-142	43.5
WP_110047441.1\|11368_13738_+	virulence protein E	S5M5Y2	Brevibacillus_phage	0.0e+00	68.7
WP_110047442.1\|14043_14331_+	VRR-NUC domain-containing protein	A0A2K5B272	Erysipelothrix_phage	1.5e-20	51.1
WP_110047443.1\|14320_15679_+	DEAD/DEAH box helicase	S5MA26	Brevibacillus_phage	4.2e-201	72.9
WP_174812455.1\|15701_15854_+	hypothetical protein	Q2I8D2	Bacillus_phage	4.3e-06	52.1
WP_110047444.1\|15870_16263_+	hypothetical protein	NA	NA	NA	NA
WP_110047445.1\|16259_16667_+	hypothetical protein	NA	NA	NA	NA
WP_110047446.1\|16839_17418_+\|terminase	terminase small subunit	U5PZD3	Bacillus_phage	3.7e-29	41.4
WP_174812456.1\|17383_18874_+\|terminase	phage terminase large subunit	A0A2H4J7G6	uncultured_Caudovirales_phage	1.1e-114	47.5
WP_110047448.1\|18873_19104_+	DUF3310 domain-containing protein	A0A1I9SET2	Klebsiella_phage	1.2e-20	57.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

5. NZ_CP054609

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: NZ_CP054609_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

NZ_CP054609_1

491907-492024

Orphan

Consensus_repeat	Method
GTCGCGTGCCCCTCTGGGGCAAGCTTTTGTTCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of NZ_CP054609_1

>merge|NZ_CP054609|1|491907-492024|CRISPRCasFinder
GTCGCGTGCCCCTCTGGGGCAAGCTTTTGTTCGAGCGTATTTTTAGCACCGAACAGAGTCGCTTGTGAGTTACTGCGTGCTGAGGGTCGCGTGCCCCTCTGGGCAAGCTTTTGTTCGT

>NZ_CP054609|1|1|491907-492024|CRISPRCasFinder
GTCGCGTGCCCCTCTGGGGCAAGCTTTTGTTCG	AGCGTATTTTTAGCACCGAACAGAGTCGCTTGTGAGTTACTGCGTGCTGAGG
GTCGCGTGCCCCTCTGGGCAAGCTTTTGTTCGT

Protein	Signature genes	Signature genes Name	Protein_function
NZ_CP054609.1\|WP_110045680.1\|483605_483911_-\|urease-subunit-gamma	unknown	unknown	gnl\|CDD\|183913
NZ_CP054609.1\|WP_110045679.1\|483232_483601_-\|urease-subunit-beta	unknown	unknown	gnl\|CDD\|376370
NZ_CP054609.1\|WP_110045684.1\|489794_491582_-\|penicillin-binding-protein	unknown	unknown	gnl\|CDD\|274573
NZ_CP054609.1\|WP_110047646.1\|496748_498011_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|223896
NZ_CP054609.1\|WP_110045678.1\|481520_483236_-\|urease-subunit-alpha	unknown	unknown	gnl\|CDD\|237305
NZ_CP054609.1\|WP_110045694.1\|484479_486150_+\|dihydroxy-acid-dehydratase	unknown	unknown	gnl\|CDD\|234861
NZ_CP054609.1\|WP_110047652.1\|504973_506044_-\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|223701
NZ_CP054609.1\|WP_174812452.1\|499260_500301_-\|endolytic-transglycosylase-MltG	unknown	unknown	gnl\|CDD\|376862
NZ_CP054609.1\|WP_110047649.1\|501195_501612_-\|Holliday-junction-resolvase-RuvX	unknown	unknown	gnl\|CDD\|234639
NZ_CP054609.1\|WP_110047651.1\|501944_504578_-\|alanine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234701
NZ_CP054609.1\|WP_110047648.1\|500884_501187_-\|DUF1292-domain-containing-protein	unknown	unknown	gnl\|CDD\|184235
NZ_CP054609.1\|WP_110047659.1\|500534_500825_-\|DUF1292-domain-containing-protein	unknown	unknown	gnl\|CDD\|377740
NZ_CP054609.1\|WP_110045681.1\|486210_486645_-\|VanZ-family-protein	unknown	unknown	gnl\|CDD\|377417
NZ_CP054609.1\|WP_110047657.1\|494155_496225_-\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
NZ_CP054609.1\|WP_110047647.1\|498039_498981_-\|U32-family-peptidase	unknown	unknown	gnl\|CDD\|223896
NZ_CP054609.1\|WP_110045676.1\|480031_480802_-\|urease-accessory-protein-UreG	unknown	unknown	gnl\|CDD\|349776
NZ_CP054609.1\|WP_110045677.1\|480830_481517_-\|urease-accessory-protein-UreF	unknown	unknown	gnl\|CDD\|223900
NZ_CP054609.1\|WP_110045683.1\|488597_489722_+\|AI-2E-family-transporter	unknown	unknown	gnl\|CDD\|274334
NZ_CP054609.1\|WP_110045682.1\|486941_488390_-\|polysaccharide-deacetylase-family-protein	unknown	unknown	gnl\|CDD\|200582
NZ_CP054609.1\|WP_110047650.1\|501632_501893_-\|IreB-family-regulatory-phosphoprotein	unknown	unknown	gnl\|CDD\|180108

Protein	Function_ID	Function_description	E-value
NZ_CP054609.1\|WP_110045680.1\|483605_483911_-\|urease-subunit-gamma	gnl\|CDD\|183913	PRK13241, ureA, urease subunit gamma; Provisional.	1.89504e-64
NZ_CP054609.1\|WP_110045679.1\|483232_483601_-\|urease-subunit-beta	gnl\|CDD\|376370	pfam00699, Urease_beta, Urease beta subunit. This subunit is known as alpha in Heliobacter.	7.4789e-64
NZ_CP054609.1\|WP_110045684.1\|489794_491582_-\|penicillin-binding-protein	gnl\|CDD\|274573	TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	6.12729e-84
NZ_CP054609.1\|WP_110047646.1\|496748_498011_-\|U32-family-peptidase	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	2.12277e-148
NZ_CP054609.1\|WP_110045678.1\|481520_483236_-\|urease-subunit-alpha	gnl\|CDD\|237305	PRK13207, ureC, urease subunit alpha; Reviewed.	0
NZ_CP054609.1\|WP_110045694.1\|484479_486150_+\|dihydroxy-acid-dehydratase	gnl\|CDD\|234861	PRK00911, PRK00911, dihydroxy-acid dehydratase; Provisional.	0
NZ_CP054609.1\|WP_110047652.1\|504973_506044_-\|AI-2E-family-transporter	gnl\|CDD\|223701	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only].	6.64886e-61
NZ_CP054609.1\|WP_174812452.1\|499260_500301_-\|endolytic-transglycosylase-MltG	gnl\|CDD\|376862	pfam02618, YceG, YceG-like family. This family of proteins is found in bacteria. Proteins in this family are typically between 332 and 389 amino acids in length. This family was previously incorrectly annotated and names as aminodeoxychorismate lyase. The structure of YceG was solved by X-ray crystallography.	1.07338e-125
NZ_CP054609.1\|WP_110047649.1\|501195_501612_-\|Holliday-junction-resolvase-RuvX	gnl\|CDD\|234639	PRK00109, PRK00109, Holliday junction resolvase RuvX.	1.04132e-65
NZ_CP054609.1\|WP_110047651.1\|501944_504578_-\|alanine--tRNA-ligase	gnl\|CDD\|234701	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.	0
NZ_CP054609.1\|WP_110047648.1\|500884_501187_-\|DUF1292-domain-containing-protein	gnl\|CDD\|184235	PRK13678, PRK13678, hypothetical protein; Provisional.	6.52295e-09
NZ_CP054609.1\|WP_110047659.1\|500534_500825_-\|DUF1292-domain-containing-protein	gnl\|CDD\|377740	pfam06949, DUF1292, Protein of unknown function (DUF1292). This family consists of several hypothetical bacterial proteins of around 90 residues in length. The function of this family is unknown.	1.87868e-05
NZ_CP054609.1\|WP_110045681.1\|486210_486645_-\|VanZ-family-protein	gnl\|CDD\|377417	pfam04892, VanZ, VanZ like family. This family contains several examples of the VanZ protein, but also contains examples of phosphotransbutyrylases.	1.59933e-17
NZ_CP054609.1\|WP_110047657.1\|494155_496225_-\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	5.16899e-45
NZ_CP054609.1\|WP_110047647.1\|498039_498981_-\|U32-family-peptidase	gnl\|CDD\|223896	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones].	3.23595e-85
NZ_CP054609.1\|WP_110045676.1\|480031_480802_-\|urease-accessory-protein-UreG	gnl\|CDD\|349776	cd05540, UreG, urease accessory protein UreG. UreG is one of the four accessory proteins of urease. Urease is an enzyme which catalyzes the decomposition of urea to form ammonia and carbon dioxide. Bacterial urease is a trimer of three subunits which are encoded by genes ureA, ureB, and ureC. Up to four accessory proteins (ureD, ureE, ureF, and ureG) are required for urease catalytical function. UreG may play an important role in nickel incorporation of the urease metallocenter. UreG is a member of the Fer4_NifH superfamily which contains an ATP-binding domain. Proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.	3.30016e-125
NZ_CP054609.1\|WP_110045677.1\|480830_481517_-\|urease-accessory-protein-UreF	gnl\|CDD\|223900	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones].	1.44556e-55
NZ_CP054609.1\|WP_110045683.1\|488597_489722_+\|AI-2E-family-transporter	gnl\|CDD\|274334	TIGR02872, UPF0118_membrane_protein_YtvI, sporulation integral membrane protein YtvI. Three lines of evidence show this protein to be involved in sporulation. First, it is under control of a sporulation-specific sigma factor, sigma-E. Second, mutation leads to a sporulation defect. Third, it if found in exactly those genomes whose bacteria are capable of sporulation, except for being absent in Clostridium acetobutylicum ATCC824. This protein has extensive hydrophobic regions and is likely an integral membrane protein. [Cellular processes, Sporulation and germination].	4.73563e-45
NZ_CP054609.1\|WP_110045682.1\|486941_488390_-\|polysaccharide-deacetylase-family-protein	gnl\|CDD\|200582	cd10959, CE4_NodB_like_3, Catalytic NodB homology domain of uncharacterized bacterial polysaccharide deacetylases. This family includes many uncharacterized bacterial polysaccharide deacetylases. Although their biological function still remains unknown, members in this family show high sequence homology to the catalytic NodB homology domain of Streptococcus pneumoniae polysaccharide deacetylase PgdA (SpPgdA), which is an extracellular metal-dependent polysaccharide deacetylase with de-N-acetylase activity toward a hexamer of chitooligosaccharide N-acetylglucosamine, but not shorter chitooligosaccharides or a synthetic peptidoglycan tetrasaccharide. Like SpPgdA, this family is a member of the carbohydrate esterase 4 (CE4) superfamily.	2.99641e-73
NZ_CP054609.1\|WP_110047650.1\|501632_501893_-\|IreB-family-regulatory-phosphoprotein	gnl\|CDD\|180108	PRK05473, IreB-like, IreB family regulatory phosphoprotein. IreB (EF1202) was characterized in Enterococcus faecalis as a small protein, well-conserved in the Firmicutes. It belongs to a system that includes the Ser/Thr protein kinase IreK, and phosphatase IreP, undergoes phosphorylation on threonine residues, and is involved in regulating cephalosporin resistance. This family was previously named DUF965 by Pfam model pfam06135.	5.05431e-51

>NZ_CP054609.1|WP_110045684.1|489794_491582_-|penicillin-binding-protein
MQRRLITIAVALTVLFGICEWRLSLIELWPRSKSGSSTQVARQAVAQRDSELVIDTGRGQFVDRNGTPLTGKTINALALFPVREGQRGELAQLSRLASLLGVNVQQLQAQLAQLKEPSYWLEAGSGHPLALTDKQLEGLKTVHMNGIRVVPYRQRYQAPYLAAQTIGYISQHPERIKAAYGHEYATGKLKLNSVIGGAGLERSLDRLLRGDGETTASYYTDAAGQPLQGLDVRVTAPVNRLYPLQVVTTLDAKLQAAIEEYADRSGLKQGAIVVLDVATRDIVTMVSRPKLNPEQVDAAGTAAANHAIRAVEPGSIFKLVTEAAALEAGVSVPTETFHCNGEYGRYGLSDWKKGGHGELNLREGLAHSCNIVFATVAERLTAKQLSDTAFRLGIGRQIGWHSEQSVGPLAGPIRLLEEEESGQIFDRKQKSADGGVMAQTGIGQRDVRISPLQAANMIATIVNEGHVVEPRIVREIRYANGQRLVSFPLHEASSPLGRLSPAATHELMEGMQLVVREGTGRFIQNGLWDAAGKSGTAEVVYNGADRVNQWFIGYGPLKSPKYAIAVLAENRPPNTTNEATRLFRAILDMAAKQQS
>NZ_CP054609.1|WP_110045683.1|488597_489722_+|AI-2E-family-transporter
MIVFYKKYWRTAFDIALIALTVYLIMFAFSYLYKLATPVFLSFFIYLFIEPPARWLSKLGLKKSIASAISVLLFTLVIISIFLGAGYIIADQANRLISNLPKYQLLLRDQVEAHSDWISSKVNSIPPDILSQFDKVVDYVTSKGSSLAQSFLITITNYLTSFSTFIFNFSIGIILAYFLSVEIKDWKRTAAEKTPRTFKIAFEFLRDNVFKGIGIYLKSQLKLISITFAVIFISLMLLGVQNAFTIAVVCGIFDVLPLLGVSTVFVPWIIYLFIVGHTSLAIWVSALFLVVVLARQILEPKITGDTLGVSAFTMLAFMIISLSLFGIAGVILSPVLIILIKALYDQRYFHRWIRMPQGEFDNNPEPEPDLPTEQ
>NZ_CP054609.1|WP_110045682.1|486941_488390_-|polysaccharide-deacetylase-family-protein
MQNLFLLLFYGLTFYAFLPGLISRMFGFRAFKRGRVKREIALTFDDGPDPRYTPQLLDLLKRYNAKATFFVVGAHAEKHPELLKRMHEEGHVIGIHNYEHKTNWLMRPKKVKWHIERTQEIIREATGQDAVFYRPPWGIVNAFDYSPGHLQIILWSAIFGDWRYKQGVNRLRQRMMKKMRPGEVVLLHDCGMTPGADERAPENMIKALDSYLAEAERRGFKFVGIDEMIALTDKAIGLVPSRFKRMLIWLWLRWEGLFHRVFRTKPVGSPSPSFHYRMVKYHGAPIDIGSGQTLNNGDDVVELHFDNRLLLEIAHKSATPIAAAIRLVRMVEKQLPTLATVVSRDPVAKEAKSIYGVTMIHRGASKLGFGVHELPAGMFASMSKIYLKVLMRVLTPTPKHKETDKKSSRHAVELKPHILTYPIHELLKLASSELVTTVSGGSEAAVKTTRPLKHDGAAVHAAPGLDLDFEQLEGSAAGKAGS
>NZ_CP054609.1|WP_110045681.1|486210_486645_-|VanZ-family-protein
MITNRSRQWTVALTIVYGCLLQYWMFFAFGRDARVADGYRYNVVPFSTIEHFVHIAGRFRRAAAFNLLGNIIMFVPFGLLLPLTKRLHPLVWTLLFAAGITSLELLQLATKRGMFDVDDIILNTGGFLIGYLVLLVTRPQLFSK
>NZ_CP054609.1|WP_110045694.1|484479_486150_+|dihydroxy-acid-dehydratase
MRSDMIKKGFDRAPHRSLLRAAGVKEEDFGKPFIAVCNSYIDIVPGHVHLQEFGKIVKEAIREAGGVPFEFNTIGVDDGIAMGHIGMRYSLASREIIADSVETVVNAHWFDGMVCIPNCDKITPGMMMAALRINIPTIFVSGGPMKAGKTSDGRSISLSSVFEGVGAFQSGKIDEKSLTELEQYGCPTCGSCSGMFTANSMNCLAEALGLALPGNGTILAVAPERKEFVKQSARQLMELIKQDIKPCDIVTKDAIDNAFAVDMAMGGSTNTVLHTLALAHEAGIDYPIERINEVANRVPHLAKIAPASDWHIEDVHNAGGVSAVLNELFKKEDALHGDVLTVTGKTLRENVAGCDILNTEVIHTLDNPHTERGGLAVLFGNIAPGGAIVKVGAVDKSVGGYHKGPAICFDSQEECLEGIAKGLIKEGHVVVIRYEGPKGGPGMPEMLAPTSQIMGMGLGAKVGLITDGRFSGASRGISIGHISPEAAEGGPLAFVRDGEEIELDLNNRTINLLIDDEELERRKAEWQGFEPKVTKGYLARYSKLVTNASNGAVLKA
>NZ_CP054609.1|WP_110045680.1|483605_483911_-|urease-subunit-gamma
MQLTEREKEKLLITVAADLARRRMQRGVKLNYPESIALLTSEIMEGARDGMTVAQLMTYGTTILTRSQVMEGIPEMIHEVQVEATFPDGTKLVTVHHPIGE
>NZ_CP054609.1|WP_110045679.1|483232_483601_-|urease-subunit-beta
MIPGEYRTASGTIELNAGRQTIEVLVVNTGDRPVQVGSHFHFFEVNRALRFDRRAAFGMRLDIPAGTAVRFEPGEEKPIRLVELGGAKRSFGLNGLTLGEAVKGTLSKEVSTRLDSWEEGAK
>NZ_CP054609.1|WP_110045678.1|481520_483236_-|urease-subunit-alpha
MSSMDRSSYAQMFGPTTGDAVRLADTELWARIEHDYTVYGDECKFGGGKVIRDGMGQSSGALREEGVLDTLITNAVIIDHWGIVKADIGIKDGHIVGIGKAGNPDIMDGVTPGMIAGASTEVIAGEGRIVTAGGIDSHIHFICPQQIETALSSGVTMMIGGGTGPATGTNATTVTPGAWHLSRMLEAIEAFPMNIGLTGKGNASFIGPLIEQIEAGAIGLKLHEDWGTTPAAIDVCLTAADQYDVQVAIHTDTLNEAGFLEDTLAAFKGRTIHTYHTEGAGGGHAPDIIRAAGELNVLPSSTNPTRPFTVNTIEEHLDMLMVCHHLDSRIPEDVAFADSRIRPETIAAEDILHDMGVFSMISSDSQAMGRVGEVVIRTWQTADKMKRQRGPLAPDDAESDNYRIKRYVAKYTINPAITHGVSHLVGSIEIGKFADLAIWQPMFFGVKPDLVLKGGSIAFAQMGDPNASIPTPQPVWGRPMFASFGKLVASSSITFVSQAAYDRGIKEQLGLTKRVEPIRGCRSISKKDMIHNDATPRIEVDPETYRVTVDGEIVTCEPAEVLPMAQRYFLF
>NZ_CP054609.1|WP_110045677.1|480830_481517_-|urease-accessory-protein-UreF
MNRNWLALQQLLDSALPIGGFSHSFGLETMVQEEQLTDSRALEAYVQTMLRQSWVTSDAMVIKAVYRDAEDGEWERLWAVERLVHTQRLAAESRSGVEKMGRRLLKLAADMWPDLHWQPVTEAVRGGRCLSTHPMAHGYICWQLGVPLRQAMESYWYTCIVTCMNSALRLMSIGQTEGQRLIARLTPLTDEAWSIAEGLEPEEAYSNMPMAELAMIHHETLYSRLFMS
>NZ_CP054609.1|WP_110045676.1|480031_480802_-|urease-accessory-protein-UreG
MCQGQGHSHKEWETPEIDASRPIRIGIGGPVGSGKTALVERLARELSGKYSVAVITNDIYTKEDARILVATGVLPEERIIGVETGGCPHTAVREDASMNFEAIEELESRFSPLDIIFIESGGDNLAAAFSPELADRFIYIIDVAQGEKIPRKGGPGIMRSDLLVINKIDLAPYVGASLRVMGDDSKRMRGERPFIFSNLLGESGVQDIVNWLEHEIAHAKGLTHSHDHAEHAADAEHTHGHSHGHTHHHHDRDHSH
>NZ_CP054609.1|WP_110047657.1|494155_496225_-|methyl-accepting-chemotaxis-protein
MKWANPRRSVGAKLFLFIFVSILACVLVVGTLAYNKSKSIIRENAADSNYQTIQQAAGKLKLLFDNYETLTLQVMVDTAIQEQLSIIRDDSLAQFDRFQATTKVNSLLQKYILSNSSIANGYLIPLQAGAYSLGSSAFDQELAEKSDWYQTVKESQGQSYWIETKVEGVAGTSAEPTLGVSRLLKSSVTSEPIFVLVFEIKLSAIQDALGEISLGDGSIVSIVDTKNRYVMYPGDDANAKAKLGTEADVALPAFVVDGDNGGSLEVNDTEGTSVIAAYSEVNSAGWRIVGKTPINELVSDANAIFVLTFIVTAAAAVAAIVICYFMIRMFANPLVQLRNLMNEGERGNLSVRLHLNRKDEIGQLTDSFNRMMTEITSLVDQTSGTADEVLATASVLTEASRKTAVSAKEIAVATEEIAGGATSLAIEAERGSDLTTTISTQMQNLLSNNQSMEASATTVQQASEQGTSYMNVLIEKTGLTEQMTRSMVEKVDRLKDSTSSIRKILDVLNNLTKQTNILSLNATIEAARAGVAGKGFMVVADEIRKLADQSRHSIDVVAQITDTIQREIDETVEVLTEAHPIFQEQVSSVKETNQIFMAVQSHMSQFSDSLGSVTEAIGKLDESQSVLSDAMTSVSAVAEQSSATSQEVASLSNEQLSVSEELVKLSNRLEDASNKLQQSLSRFTTKSEA
>NZ_CP054609.1|WP_110047646.1|496748_498011_-|U32-family-peptidase
MANTTSETGRKLTGKRYRLDRPELLAPAGNLEKLKFAVHYGADAVYIGGQKYGLRSNADNFSFEEMREGVEFAAKYGAKVFVATNIYAHNEDIEGLEEYLKSLEEAGIAAIIAADPIIIETALRVAPKLEVHLSTQQSTLNWQAVKFWKDEGLPRVVLAREASLEEIAEIKEHVDIEIEAFIHGAMCSSFSGRCVLSNHFTDRDSNRGGCCQSCRWKYDLFVDAEQFEDNGEQFTMGSKDLCMIEHLPDLIEVGIDSFKIEGRMKSIHYVATVVNAYRQAIDAYFADPEGYELKPEWMEEIYKAANRPLNTGFFFDTPGAEEHIYGPEDKGSPYDFAGIVLDYDAETGIATIQQRNHFKPGQEIEFVGPGGTFFKQIVGEISDKEGQSLDAARHPLQEIRMAVTQPVKRMDMMRKRIGKG
>NZ_CP054609.1|WP_110047647.1|498039_498981_-|U32-family-peptidase
MTVKKPELLVTASDLDELQRLIAAGADAVLIGDSRFGTRVPGEFTLEQMAEAVSIAKQADRDVRIYVSINNIIDNKLVDEMPAYVTELERIGIDAVTFGDPAVLMAVREHAPKLGLHWNAEMTSTNHDTANFWGRRGATRFVCARELNMEQIAGMKAKTSLEVQVQVHGMTNIYHSKRSLVQSYMDFKQLAEGNSATGDHSDMYLMEADRPDERYPIFEDSNGTHIMSADDLCMIENLQELMEANIDSFKIEGLMKSVDYNETVVRAYRAAIDTYCKDPDHYRFQDEWLEAIQAKQHPDRELSYGFFYKEQVY
>NZ_CP054609.1|WP_174812452.1|499260_500301_-|endolytic-transglycosylase-MltG
MWVILSLLGIMLLGAGSVVLFVWNGLRPTASGDPVRIEVKSGTSPFNLAEQLEDEGIIRSAFIFKYYLKLKDEGNRFQAGSYDMSPGMELDAVIAKLNAGDTVKAETVKFTIPEGFTAAQIAEKLGSEGIVSQDELMKLIDENRSWEDVDSILQIPTDNKELHHLEGYLFPETYELKKGATAEEIVKRMLAETDRKLNTVSDLDEKLATLGLNLHQLLTIASLIEREVVVDEERPIVASVIYNRIKDGMPLQIDATIQYLLDKQKERLMEKDLQVESPYNTYLNKGLPPGPIASPSLKSIEAALNPETTDYLYYVTKKDGTQTHLFAKTYKEHLRNIDESNKTAGQ
>NZ_CP054609.1|WP_110047659.1|500534_500825_-|DUF1292-domain-containing-protein
MAPQRGTKLKDKFGKFVELTSEGGTEEAYRIMSEFQLGGQYYAALQSEAMREEGEVEMLRLIENGDELELENIENDEEWETAAEAYDMLCFDDSNS
>NZ_CP054609.1|WP_110047648.1|500884_501187_-|DUF1292-domain-containing-protein
MAKNENQFEEPEIIYIPDEDGNEEEFEVIMKFEVDGSEHKYMMVVPLESDNEEEDEVYAFRYEEEGDDLKLYTIEDEEEWNIVEETFNTLLGELDESDED
>NZ_CP054609.1|WP_110047649.1|501195_501612_-|Holliday-junction-resolvase-RuvX
MRIMGLDYGDRNIGVAVSDAFGWTAQGTGVVHRKRDGGEFDEIAALVKEHEVSEVVVGLPKNMNGSIGPRGEICMAFAEELKQKLNLPVHLWDERLTTVSAERTLLEADVSRKKRKQVVDKLAATLILQNYLDSRTKR
>NZ_CP054609.1|WP_110047650.1|501632_501893_-|IreB-family-regulatory-phosphoprotein
MNSMDKTMKFDVKAEGLEATAQEILLQVHDALLDKDYNPINQIVGYLLSGDPAYIPRHNNARSLIRKKERDELIEELVRFYLKEHK
>NZ_CP054609.1|WP_110047651.1|501944_504578_-|alanine--tRNA-ligase
MKASEIRSKWLAFFESKGHHIEPSASLVPHNDPSLLWINAGMAPLKPYFDGRVKPENPRITNSQKCIRTNDIENVGKTRRHHTFFEMLGNFSIGDYFKEEVITWAWEFLTDKKWIGFDPERLSVTVYPEDEEAFKYWNEKIGLPAERIYKLEENFWDIGEGPCGPCTEIFYDRGDKYGDLNDPECWPGGENERFLEVWNLVFSQFNHNKDGSYTPLPNKNIDTGAGLERFASILQDVDSNFDTDLFRPIIDRTCEIASVQYHVNEEHDVALKVIADHIRTVAFAVGDGVLPSNEGRGYVIRRLLRRAVRYGKALGVDRPFLFELVKVVGDVMGVYYPEVVEKREFIERVIRTEEERFHETLSDGLTLLAALVTQAREAGNSEINGDNAFRLYDTYGFPFDLTEDYAAENGMTVDRAGFDTAMEAQRERARAARQDTGGMNVQGGPLSELTEKTEFVGYTELTSAAKITAIVHEDSLVDLAGAGSRVLVLLDRTPFYAESGGQVGDRGVIEGNGFVLNVEDVTKAPHGQPVHHAVVASGTVRVGETVEAVVARDLRDDIIKNHTATHLLHKALKEVLGEHVNQAGSLVKADSLRFDFSHFGSITEEELADIERRVNEQIWLGTPVVIESKPIAEAKAMGAMALFGEKYGDVVRVVQVGKYSIELCGGIHVGNTSQIGTFKLIGESGIGSGVRRIEAVTGRHAYTYMESQFDLLKQAAGLLKSNTADVPKRIEALFGQVKELGRDNESLQAKLSRIEAGSLTDKAKTVADITVLTAEVSAPSMDALRGIVDELKSKLTSAVIVLGAVQEDKVNIVASVSPDLVKKGLNAGKLVKEAATLCGGGGGGRPDMAQAGGKDASKLAEALKLAEELVLAQANVI
>NZ_CP054609.1|WP_110047652.1|504973_506044_-|AI-2E-family-transporter
MERFTNNRMFRMLVYLILALVAAYMLLQLKPIFMQIYTFLKAVLAPFFIAMIISYVLNPIVSMLTDRKMPRTVAVLLIYAVFCGALTVILMNMIPMFIKQVQELNEHAPELTIRAKSLVDDLNNNSMLPESIRTGINNALYKMEKKLSESLFDFVNNIGAMVSVVFIMFIIPFLAFYILKDFEVFERTVITYVPKSHRQQAVRLLKDIDTALGSYIRGQFLVCLIIGILAYIGYWIIGMPYPLLLASVVAITNVIPYLGPFFGAAPALLMAATVSVKMMILVVVVNTLCQILEGNVVSPQVVGRTLHMHPLSIILALLVGGELAGIAGMILAVPIFAALKVIVQHFFAYYVRRKTI

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
NZ_CP054609_1	1.1\|491940\|52\|NZ_CP054609\|CRISPRCasFinder	491940-491991	52	NZ_CP054609	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed1, complete sequence	491940-491991	0	1.0

1. spacer 1.1|491940|52|NZ_CP054609|CRISPRCasFinder matches to NZ_CP054609 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed1, complete sequence) position: , mismatch: 0, identity: 1.0

agcgtatttttagcaccgaacagagtcgcttgtgagttactgcgtgctgagg	CRISPR spacer
agcgtatttttagcaccgaacagagtcgcttgtgagttactgcgtgctgagg	Protospacer
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Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

15872 : 21507

Burkholderia_virus(28.57%)

integrase

attL 16582:16595|attR 22726:22739

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_110042989.1\|15872_16214_-	hypothetical protein	K7R9L4	Vibrio_phage	9.4e-09	36.3
WP_110042988.1\|16359_16653_-	hypothetical protein	A0A0K2CNV4	Brevibacillus_phage	1.3e-14	45.7
16582:16595	attL	NA	NA	NA	NA
WP_110042987.1\|16692_17136_-	hypothetical protein	Q6JIG5	Burkholderia_virus	2.6e-43	59.7
WP_110042986.1\|17146_17689_-\|integrase	site-specific integrase	A3F636	Streptococcus_phage	3.0e-41	48.7
WP_110043275.1\|17721_18249_-	hypothetical protein	NA	NA	NA	NA
WP_110042985.1\|18248_18464_-	hypothetical protein	NA	NA	NA	NA
WP_110042984.1\|18466_18850_-	hypothetical protein	G1JWL3	Mycobacterium_phage	3.5e-20	48.0
WP_110042983.1\|18900_19602_-	hypothetical protein	Q6JII4	Burkholderia_virus	9.6e-16	25.8
WP_174812447.1\|19752_21507_-	DNA cytosine methyltransferase	A0A1I9KFD6	Aeromonas_phage	4.9e-125	53.0
22726:22739	attR	NA	NA	NA	NA

DBSCAN-SWA_2

24591 : 36372

Brevibacillus_phage(33.33%)

integrase

attL 25452:25466|attR 43511:43525

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
WP_110042977.1\|24591_24945_-	hypothetical protein	A0A0K2CYJ0	Paenibacillus_phage	5.2e-10	38.8
WP_174812416.1\|24946_25105_-	hypothetical protein	A0A1C8E9A0	Bacillus_phage	3.8e-05	43.8
WP_110042976.1\|25266_26061_-	ATP-binding protein	A0A0K2CPA5	Brevibacillus_phage	3.3e-65	58.0
25452:25466	attL	NA	NA	NA	NA
WP_110042975.1\|25957_26800_-	DUF4373 domain-containing protein	S4TZS9	uncultured_phage	1.4e-13	39.8
WP_174812417.1\|27082_27241_-	hypothetical protein	NA	NA	NA	NA
WP_174812418.1\|27368_27545_-	hypothetical protein	NA	NA	NA	NA
WP_110042972.1\|27838_28096_-	helix-turn-helix transcriptional regulator	S5MNZ7	Brevibacillus_phage	6.2e-13	44.9
WP_110042971.1\|28324_28519_-	helix-turn-helix domain-containing protein	U5P0W4	Brevibacillus_phage	2.6e-08	46.7
WP_110042970.1\|28515_28734_-	hypothetical protein	NA	NA	NA	NA
WP_110043274.1\|28745_28958_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA
WP_110042969.1\|29130_29541_+	helix-turn-helix transcriptional regulator	A0A2R2ZGJ3	Clostridioides_phage	3.5e-10	50.0
WP_110042968.1\|29609_30530_+	ImmA/IrrE family metallo-endopeptidase	A0A2H4JA43	uncultured_Caudovirales_phage	7.9e-10	27.3
WP_110042967.1\|30569_31745_+\|integrase	site-specific integrase	S5MNZ2	Brevibacillus_phage	2.3e-78	41.1
WP_110042966.1\|31997_32204_-	alpha/beta-type small acid-soluble spore protein	A0A1P8CX76	Bacillus_phage	5.3e-07	43.8
WP_110042965.1\|32344_33193_+	ATP-dependent DNA ligase	O64130	Bacillus_phage	8.8e-48	40.9
WP_110042964.1\|33310_33907_-	carbonic anhydrase	NA	NA	NA	NA
WP_110042963.1\|34093_34942_+	DUF4850 domain-containing protein	NA	NA	NA	NA
WP_110042962.1\|35145_36372_+	TerD family protein	A0A1S5SFA9	Streptococcus_phage	2.2e-31	41.7
43511:43525	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage